Query 048142
Match_columns 352
No_of_seqs 379 out of 2882
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 11:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.6E-34 1.2E-38 266.6 23.5 219 8-236 7-245 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.3E-33 4.3E-38 262.9 23.6 176 1-186 36-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 4.2E-25 1.4E-29 210.9 15.7 291 1-327 282-578 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.4E-21 4.9E-26 186.4 26.5 258 1-277 315-581 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 6.5E-22 2.2E-26 190.5 9.1 164 26-199 127-307 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.8 9.8E-21 3.3E-25 182.4 12.0 148 69-221 126-286 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 2.3E-19 8E-24 162.1 18.3 282 3-327 45-367 (388)
8 2y4t_A DNAJ homolog subfamily 99.8 6.4E-19 2.2E-23 162.1 18.1 256 2-274 37-323 (450)
9 1w3b_A UDP-N-acetylglucosamine 99.8 3.7E-17 1.3E-21 147.6 26.3 253 2-275 112-368 (388)
10 4eqf_A PEX5-related protein; a 99.8 4.5E-17 1.5E-21 145.8 21.7 222 2-236 76-310 (365)
11 2y4t_A DNAJ homolog subfamily 99.7 3.6E-16 1.2E-20 143.7 24.0 186 36-235 153-357 (450)
12 1fch_A Peroxisomal targeting s 99.7 6.1E-16 2.1E-20 138.2 24.1 256 2-270 75-354 (368)
13 3cv0_A Peroxisome targeting si 99.7 2.1E-16 7.1E-21 138.6 20.5 258 2-274 32-314 (327)
14 3hym_B Cell division cycle pro 99.7 4.3E-16 1.5E-20 136.8 21.4 253 3-274 34-298 (330)
15 3ieg_A DNAJ homolog subfamily 99.7 2.6E-16 8.8E-21 139.7 19.6 290 2-327 14-334 (359)
16 3mkr_A Coatomer subunit epsilo 99.7 1.3E-15 4.5E-20 132.2 21.2 244 4-274 12-263 (291)
17 2gw1_A Mitochondrial precursor 99.7 1.4E-16 4.8E-21 148.7 15.9 290 2-327 17-400 (514)
18 3hym_B Cell division cycle pro 99.7 4E-15 1.4E-19 130.6 24.0 220 3-236 68-299 (330)
19 3uq3_A Heat shock protein STI1 99.7 3.9E-15 1.3E-19 125.9 20.5 216 2-236 16-236 (258)
20 2pl2_A Hypothetical conserved 99.7 7.2E-15 2.5E-19 121.9 21.3 198 23-234 2-212 (217)
21 1fch_A Peroxisomal targeting s 99.7 7.1E-16 2.4E-20 137.8 15.7 253 4-275 38-314 (368)
22 4eqf_A PEX5-related protein; a 99.7 3.5E-15 1.2E-19 133.4 17.1 232 25-275 64-310 (365)
23 2gw1_A Mitochondrial precursor 99.6 1.5E-14 5.2E-19 134.8 21.5 221 2-237 248-479 (514)
24 2ho1_A Type 4 fimbrial biogene 99.6 6.9E-14 2.4E-18 118.1 23.5 200 26-237 37-239 (252)
25 3mkr_A Coatomer subunit epsilo 99.6 1.8E-14 6.1E-19 125.1 19.5 215 2-237 45-265 (291)
26 3fp2_A TPR repeat-containing p 99.6 5.2E-15 1.8E-19 139.0 17.5 254 2-274 36-406 (537)
27 2vq2_A PILW, putative fimbrial 99.6 1.4E-13 4.7E-18 113.7 24.1 201 25-237 7-212 (225)
28 3ieg_A DNAJ homolog subfamily 99.6 1.4E-13 4.9E-18 121.8 25.6 220 2-237 82-336 (359)
29 3cv0_A Peroxisome targeting si 99.6 1.3E-14 4.3E-19 127.2 17.5 227 2-233 66-312 (327)
30 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.5E-18 116.4 23.0 197 2-211 48-247 (252)
31 3fp2_A TPR repeat-containing p 99.6 9.8E-14 3.3E-18 130.3 23.4 222 2-238 254-493 (537)
32 2q7f_A YRRB protein; TPR, prot 99.6 6.4E-14 2.2E-18 117.4 19.5 202 23-237 20-223 (243)
33 2q7f_A YRRB protein; TPR, prot 99.6 4.7E-14 1.6E-18 118.2 18.6 202 1-216 33-236 (243)
34 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.4E-14 2.2E-18 119.7 18.8 220 3-237 17-245 (275)
35 2vq2_A PILW, putative fimbrial 99.6 4.7E-13 1.6E-17 110.5 23.2 197 2-211 19-220 (225)
36 1b89_A Protein (clathrin heavy 99.6 2E-15 6.7E-20 135.4 8.2 190 3-233 44-233 (449)
37 1b89_A Protein (clathrin heavy 99.6 2.7E-16 9.3E-21 141.0 0.6 218 3-271 15-232 (449)
38 2pl2_A Hypothetical conserved 99.6 3E-13 1E-17 112.0 18.0 183 2-200 16-212 (217)
39 1ouv_A Conserved hypothetical 99.5 4.3E-12 1.5E-16 108.6 25.5 212 3-238 18-253 (273)
40 4abn_A Tetratricopeptide repea 99.5 2.8E-13 9.7E-18 125.7 19.1 210 7-232 84-317 (474)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.1E-13 2.1E-17 113.5 18.5 210 2-230 54-269 (275)
42 2h6f_A Protein farnesyltransfe 99.5 6.8E-13 2.3E-17 119.3 19.4 214 3-233 109-344 (382)
43 3u4t_A TPR repeat-containing p 99.5 2E-12 6.7E-17 110.3 21.4 224 2-237 14-251 (272)
44 3uq3_A Heat shock protein STI1 99.5 7.2E-13 2.4E-17 111.8 16.4 223 26-274 5-235 (258)
45 3vtx_A MAMA; tetratricopeptide 99.5 6.7E-12 2.3E-16 100.6 20.9 166 68-236 3-170 (184)
46 3u4t_A TPR repeat-containing p 99.5 1E-11 3.6E-16 105.8 20.4 235 27-273 4-248 (272)
47 2ond_A Cleavage stimulation fa 99.4 3E-11 1E-15 105.5 23.3 215 8-237 33-271 (308)
48 3nf1_A KLC 1, kinesin light ch 99.4 4.3E-12 1.5E-16 110.1 17.4 205 25-235 26-306 (311)
49 3vtx_A MAMA; tetratricopeptide 99.4 2.3E-11 7.8E-16 97.5 20.3 169 25-206 4-174 (184)
50 3as5_A MAMA; tetratricopeptide 99.4 2.8E-11 9.7E-16 96.3 18.1 165 70-237 8-174 (186)
51 2h6f_A Protein farnesyltransfe 99.4 3E-11 1E-15 108.5 19.4 227 26-272 97-344 (382)
52 4gyw_A UDP-N-acetylglucosamine 99.4 2.5E-11 8.7E-16 117.5 19.4 162 69-235 8-173 (723)
53 1ouv_A Conserved hypothetical 99.4 6.2E-10 2.1E-14 95.1 25.5 221 25-273 5-249 (273)
54 3ro2_A PINS homolog, G-protein 99.4 1.2E-11 4.1E-16 108.1 14.6 227 2-235 16-291 (338)
55 4a1s_A PINS, partner of inscut 99.4 1E-11 3.5E-16 112.5 14.4 264 2-273 59-370 (411)
56 3as5_A MAMA; tetratricopeptide 99.3 7.6E-11 2.6E-15 93.8 17.5 169 26-207 8-178 (186)
57 3nf1_A KLC 1, kinesin light ch 99.3 3.2E-11 1.1E-15 104.5 15.9 194 2-203 38-308 (311)
58 3sf4_A G-protein-signaling mod 99.3 3.6E-11 1.2E-15 108.3 16.7 266 2-274 20-335 (406)
59 3ulq_A Response regulator aspa 99.3 2.2E-11 7.4E-16 109.6 15.2 228 2-235 114-367 (383)
60 2ond_A Cleavage stimulation fa 99.3 3E-10 1E-14 99.1 21.6 186 8-207 81-275 (308)
61 4i17_A Hypothetical protein; T 99.3 4.2E-10 1.5E-14 93.4 21.6 190 25-235 6-208 (228)
62 3edt_B KLC 2, kinesin light ch 99.3 1.6E-11 5.6E-16 104.7 13.0 225 3-235 13-280 (283)
63 4abn_A Tetratricopeptide repea 99.3 1.7E-11 5.7E-16 113.7 13.8 218 42-278 84-324 (474)
64 4a1s_A PINS, partner of inscut 99.3 1.6E-11 5.6E-16 111.1 11.7 229 2-235 97-371 (411)
65 2ooe_A Cleavage stimulation fa 99.3 1.2E-09 4E-14 102.7 23.9 214 8-236 255-492 (530)
66 4gyw_A UDP-N-acetylglucosamine 99.3 2.6E-10 8.9E-15 110.5 19.1 165 23-202 5-174 (723)
67 3sf4_A G-protein-signaling mod 99.3 5.1E-11 1.7E-15 107.3 13.0 229 2-235 58-335 (406)
68 3ro2_A PINS homolog, G-protein 99.2 5.4E-11 1.9E-15 103.9 12.6 230 2-236 54-332 (338)
69 4i17_A Hypothetical protein; T 99.2 5.8E-10 2E-14 92.5 17.4 153 68-223 5-169 (228)
70 3q15_A PSP28, response regulat 99.2 4.7E-10 1.6E-14 100.7 16.8 228 2-235 112-364 (378)
71 1qqe_A Vesicular transport pro 99.2 8.5E-10 2.9E-14 95.4 15.5 201 28-233 39-266 (292)
72 2xm6_A Protein corresponding t 99.2 3.4E-08 1.2E-12 91.8 27.3 210 4-237 56-289 (490)
73 2xm6_A Protein corresponding t 99.1 3.6E-08 1.2E-12 91.6 27.1 210 4-237 92-326 (490)
74 3ulq_A Response regulator aspa 99.1 2.6E-09 8.9E-14 95.9 18.3 228 3-235 24-292 (383)
75 4g1t_A Interferon-induced prot 99.1 3.1E-09 1.1E-13 97.9 18.8 227 4-237 151-460 (472)
76 2fo7_A Synthetic consensus TPR 99.1 4.2E-09 1.4E-13 78.7 16.1 127 72-201 3-131 (136)
77 4g1t_A Interferon-induced prot 99.1 6.5E-09 2.2E-13 95.8 20.7 229 2-239 62-366 (472)
78 2fo7_A Synthetic consensus TPR 99.1 3.5E-09 1.2E-13 79.1 15.4 129 107-237 3-133 (136)
79 1hz4_A MALT regulatory protein 99.1 1.8E-08 6E-13 90.0 22.3 264 3-274 26-321 (373)
80 3qky_A Outer membrane assembly 99.1 1.2E-08 4E-13 86.5 19.3 174 25-208 14-230 (261)
81 1hz4_A MALT regulatory protein 99.1 2.4E-08 8.3E-13 89.1 21.4 228 3-235 65-321 (373)
82 2ooe_A Cleavage stimulation fa 99.1 1.6E-08 5.5E-13 94.9 20.9 186 4-204 292-494 (530)
83 1qqe_A Vesicular transport pro 99.1 2.9E-09 9.7E-14 92.1 14.6 198 2-204 48-271 (292)
84 1xi4_A Clathrin heavy chain; a 99.1 2.1E-08 7.2E-13 100.7 21.9 95 5-122 1090-1184(1630)
85 3mv2_B Coatomer subunit epsilo 99.0 1.2E-08 4E-13 87.8 17.3 178 45-237 85-283 (310)
86 3q15_A PSP28, response regulat 99.0 1.6E-09 5.6E-14 97.2 12.1 230 3-237 24-291 (378)
87 3qky_A Outer membrane assembly 99.0 3E-08 1E-12 83.9 19.2 168 68-237 13-225 (261)
88 2pzi_A Probable serine/threoni 99.0 2.6E-08 9E-13 96.4 20.9 169 3-188 403-583 (681)
89 3mv2_B Coatomer subunit epsilo 99.0 2.9E-08 1E-12 85.3 18.1 143 89-234 85-238 (310)
90 2ifu_A Gamma-SNAP; membrane fu 99.0 2.8E-08 9.5E-13 86.5 18.5 220 3-229 3-254 (307)
91 3edt_B KLC 2, kinesin light ch 99.0 3E-09 1E-13 90.5 11.8 230 37-271 12-277 (283)
92 1xi4_A Clathrin heavy chain; a 99.0 4.4E-08 1.5E-12 98.4 21.4 226 2-271 1060-1305(1630)
93 2pzi_A Probable serine/threoni 99.0 3.4E-09 1.2E-13 102.6 13.4 171 37-222 402-583 (681)
94 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.9E-08 2.7E-12 79.5 19.8 170 70-239 4-216 (225)
95 4ga2_A E3 SUMO-protein ligase 98.9 1.6E-09 5.3E-14 83.9 7.3 141 77-222 4-149 (150)
96 3qou_A Protein YBBN; thioredox 98.9 4.7E-08 1.6E-12 84.2 17.1 163 68-234 115-282 (287)
97 2vsy_A XCC0866; transferase, g 98.9 4.6E-08 1.6E-12 92.7 17.6 162 39-214 2-169 (568)
98 3rjv_A Putative SEL1 repeat pr 98.9 3.3E-07 1.1E-11 75.1 20.4 175 44-239 4-200 (212)
99 3urz_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 80.3 14.9 85 2-98 15-116 (208)
100 3urz_A Uncharacterized protein 98.9 1.1E-07 3.7E-12 77.7 17.1 164 27-205 5-189 (208)
101 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.6E-07 8.8E-12 76.4 19.6 171 25-207 3-218 (225)
102 2vsy_A XCC0866; transferase, g 98.9 4.1E-08 1.4E-12 93.0 16.2 151 83-237 2-158 (568)
103 3qou_A Protein YBBN; thioredox 98.9 5.3E-08 1.8E-12 83.9 15.2 164 23-201 114-283 (287)
104 2r5s_A Uncharacterized protein 98.9 3.5E-08 1.2E-12 78.3 12.5 160 72-235 8-172 (176)
105 3u3w_A Transcriptional activat 98.8 7.9E-07 2.7E-11 76.6 21.7 163 72-234 77-264 (293)
106 3rjv_A Putative SEL1 repeat pr 98.8 6.5E-07 2.2E-11 73.3 19.5 177 8-204 3-199 (212)
107 2qfc_A PLCR protein; TPR, HTH, 98.8 9E-07 3.1E-11 76.2 20.9 165 70-234 75-264 (293)
108 3e4b_A ALGK; tetratricopeptide 98.8 1.9E-06 6.7E-11 79.1 23.9 193 25-239 175-390 (452)
109 2r5s_A Uncharacterized protein 98.8 7.2E-08 2.4E-12 76.5 11.5 159 28-201 8-172 (176)
110 4ga2_A E3 SUMO-protein ligase 98.8 7.2E-08 2.5E-12 74.4 11.0 136 3-155 9-148 (150)
111 3dra_A Protein farnesyltransfe 98.7 2.2E-06 7.5E-11 74.1 21.1 216 5-235 47-286 (306)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.3E-07 1.8E-11 73.4 16.4 132 69-206 5-154 (213)
113 2ifu_A Gamma-SNAP; membrane fu 98.7 1.3E-07 4.6E-12 82.2 13.3 193 38-234 3-222 (307)
114 3gyz_A Chaperone protein IPGC; 98.7 1.1E-07 3.9E-12 73.4 11.3 102 136-237 30-134 (151)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.9E-07 1.7E-11 73.6 15.7 126 107-237 8-151 (213)
116 2c2l_A CHIP, carboxy terminus 98.7 1.1E-07 3.8E-12 81.6 11.8 195 25-236 3-199 (281)
117 3u3w_A Transcriptional activat 98.7 2.4E-06 8.2E-11 73.6 20.3 163 31-201 80-265 (293)
118 1a17_A Serine/threonine protei 98.7 1.1E-06 3.7E-11 68.2 15.4 126 72-200 15-144 (166)
119 3gw4_A Uncharacterized protein 98.7 5.5E-07 1.9E-11 72.5 13.9 159 2-167 3-173 (203)
120 1a17_A Serine/threonine protei 98.7 8.3E-07 2.8E-11 68.9 14.5 128 105-234 13-144 (166)
121 1na0_A Designed protein CTPR3; 98.6 7.2E-07 2.5E-11 65.3 13.1 63 70-133 9-71 (125)
122 2qfc_A PLCR protein; TPR, HTH, 98.6 2.7E-06 9.1E-11 73.3 18.3 169 29-201 78-265 (293)
123 1na0_A Designed protein CTPR3; 98.6 2E-06 6.9E-11 62.9 15.1 116 26-154 9-124 (125)
124 2e2e_A Formate-dependent nitri 98.6 9E-07 3.1E-11 69.9 13.3 119 3-133 22-143 (177)
125 4gco_A Protein STI-1; structur 98.6 1E-06 3.6E-11 65.6 12.9 104 108-213 16-121 (126)
126 4e6h_A MRNA 3'-END-processing 98.6 3.5E-06 1.2E-10 80.9 19.1 220 8-239 326-573 (679)
127 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4.1E-11 64.7 12.7 81 142-222 47-129 (131)
128 3gw4_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 69.9 14.1 155 37-201 3-175 (203)
129 4gco_A Protein STI-1; structur 98.6 5.9E-07 2E-11 67.0 10.7 100 137-236 8-110 (126)
130 3e4b_A ALGK; tetratricopeptide 98.6 7.3E-07 2.5E-11 81.9 13.6 92 143-237 178-281 (452)
131 2vgx_A Chaperone SYCD; alterna 98.6 4.4E-07 1.5E-11 69.8 10.1 96 140-235 20-117 (148)
132 1p5q_A FKBP52, FK506-binding p 98.6 7.8E-07 2.7E-11 78.4 12.9 94 141-234 196-292 (336)
133 4f3v_A ESX-1 secretion system 98.6 1.3E-06 4.6E-11 74.0 13.7 202 3-213 18-247 (282)
134 2lni_A Stress-induced-phosphop 98.5 1.4E-06 4.8E-11 64.7 12.2 97 68-167 14-110 (133)
135 3dra_A Protein farnesyltransfe 98.5 4.2E-05 1.4E-09 66.0 22.5 197 6-216 84-302 (306)
136 2vyi_A SGTA protein; chaperone 98.5 4.7E-06 1.6E-10 61.4 14.5 118 25-156 11-129 (131)
137 2lni_A Stress-induced-phosphop 98.5 3.7E-06 1.3E-10 62.3 13.8 119 23-155 13-132 (133)
138 4f3v_A ESX-1 secretion system 98.5 3.3E-06 1.1E-10 71.6 14.8 186 38-238 18-239 (282)
139 3gyz_A Chaperone protein IPGC; 98.5 5.1E-06 1.7E-10 64.0 14.7 92 72-167 38-130 (151)
140 4b4t_Q 26S proteasome regulato 98.5 2.7E-05 9.1E-10 70.6 21.3 202 33-234 11-243 (434)
141 2vgx_A Chaperone SYCD; alterna 98.5 2.6E-06 9E-11 65.3 12.3 99 25-134 20-118 (148)
142 4e6h_A MRNA 3'-END-processing 98.5 1E-05 3.6E-10 77.6 18.6 203 4-217 356-584 (679)
143 2fbn_A 70 kDa peptidylprolyl i 98.4 2.7E-07 9.1E-12 74.6 6.1 132 106-237 39-187 (198)
144 3q7a_A Farnesyltransferase alp 98.4 2.8E-05 9.4E-10 68.1 19.1 217 4-235 67-330 (349)
145 2kck_A TPR repeat; tetratricop 98.4 2.8E-06 9.6E-11 60.8 11.0 97 141-237 6-107 (112)
146 2e2e_A Formate-dependent nitri 98.4 3.2E-06 1.1E-10 66.7 11.7 126 81-209 21-151 (177)
147 2xcb_A PCRH, regulatory protei 98.4 4.3E-06 1.5E-10 63.5 12.0 94 142-235 19-114 (142)
148 1p5q_A FKBP52, FK506-binding p 98.4 8.1E-06 2.8E-10 71.8 15.2 139 25-167 146-291 (336)
149 3upv_A Heat shock protein STI1 98.4 5.2E-06 1.8E-10 61.4 11.6 91 144-234 7-99 (126)
150 3dss_A Geranylgeranyl transfer 98.4 0.00027 9.2E-09 61.5 23.8 216 5-235 43-303 (331)
151 3q49_B STIP1 homology and U bo 98.4 8.4E-06 2.9E-10 61.0 12.5 95 140-234 8-104 (137)
152 1elw_A TPR1-domain of HOP; HOP 98.4 1.1E-05 3.8E-10 58.1 12.8 95 70-167 4-98 (118)
153 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.8E-10 60.0 12.9 97 27-133 9-111 (127)
154 3sz7_A HSC70 cochaperone (SGT) 98.3 1.8E-05 6.1E-10 61.5 14.4 99 25-134 10-108 (164)
155 2dba_A Smooth muscle cell asso 98.3 2.1E-05 7E-10 59.5 14.1 93 69-166 27-124 (148)
156 1elw_A TPR1-domain of HOP; HOP 98.3 4E-05 1.4E-09 55.1 14.9 109 25-147 3-112 (118)
157 2c2l_A CHIP, carboxy terminus 98.3 3.6E-06 1.2E-10 72.1 10.4 179 2-201 15-198 (281)
158 3sz7_A HSC70 cochaperone (SGT) 98.3 8.2E-06 2.8E-10 63.5 11.6 104 104-210 10-116 (164)
159 1elr_A TPR2A-domain of HOP; HO 98.3 1.3E-05 4.4E-10 59.0 12.2 98 27-134 5-108 (131)
160 2dba_A Smooth muscle cell asso 98.3 1.4E-05 4.7E-10 60.5 12.5 108 104-214 27-140 (148)
161 4b4t_Q 26S proteasome regulato 98.3 3.5E-05 1.2E-09 69.8 17.3 194 2-201 15-244 (434)
162 1hxi_A PEX5, peroxisome target 98.3 4.4E-06 1.5E-10 61.6 9.3 94 143-236 19-114 (121)
163 2kck_A TPR repeat; tetratricop 98.3 2E-05 6.8E-10 56.2 12.7 99 25-134 5-106 (112)
164 3ro3_A PINS homolog, G-protein 98.3 1E-05 3.4E-10 62.0 11.5 96 71-166 10-114 (164)
165 2xcb_A PCRH, regulatory protei 98.3 3.3E-05 1.1E-09 58.4 14.3 98 26-134 18-115 (142)
166 3upv_A Heat shock protein STI1 98.3 4.8E-05 1.6E-09 56.0 14.7 96 27-133 5-100 (126)
167 4gcn_A Protein STI-1; structur 98.3 4.5E-06 1.5E-10 62.2 8.8 92 144-235 11-111 (127)
168 1elr_A TPR2A-domain of HOP; HO 98.2 6.6E-06 2.3E-10 60.6 9.6 97 70-167 4-105 (131)
169 3q49_B STIP1 homology and U bo 98.2 4.3E-05 1.5E-09 57.0 13.9 98 25-133 8-105 (137)
170 3n71_A Histone lysine methyltr 98.2 1.1E-05 3.6E-10 74.6 11.6 123 114-236 318-464 (490)
171 3ro3_A PINS homolog, G-protein 98.2 1.5E-05 5.3E-10 60.9 10.6 130 106-235 10-157 (164)
172 1wao_1 Serine/threonine protei 98.1 7.9E-06 2.7E-10 75.5 9.8 119 111-232 12-135 (477)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.5E-05 8.6E-10 71.7 13.1 95 141-235 317-414 (457)
174 1wao_1 Serine/threonine protei 98.1 5E-05 1.7E-09 70.1 14.5 157 31-201 11-196 (477)
175 2xev_A YBGF; tetratricopeptide 98.1 5.6E-05 1.9E-09 55.7 12.3 91 114-207 11-110 (129)
176 2xev_A YBGF; tetratricopeptide 98.1 1.9E-05 6.4E-10 58.3 9.4 93 145-237 6-106 (129)
177 2fbn_A 70 kDa peptidylprolyl i 98.1 7E-05 2.4E-09 60.1 13.1 132 26-167 38-183 (198)
178 3dss_A Geranylgeranyl transfer 98.1 0.00074 2.5E-08 58.7 19.8 195 7-217 90-319 (331)
179 1ihg_A Cyclophilin 40; ppiase 98.0 5.7E-05 2E-09 67.3 12.9 89 140-228 272-362 (370)
180 1dce_A Protein (RAB geranylger 98.0 0.00097 3.3E-08 62.8 21.8 171 41-225 44-244 (567)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00012 4E-09 67.3 15.2 130 26-167 268-412 (457)
182 1hxi_A PEX5, peroxisome target 98.0 7.7E-05 2.6E-09 54.8 11.4 91 30-132 21-112 (121)
183 2hr2_A Hypothetical protein; a 98.0 3.5E-05 1.2E-09 59.2 9.7 61 175-235 59-130 (159)
184 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6.3E-10 57.7 7.6 87 3-99 2-90 (117)
185 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.7E-10 58.4 6.9 89 38-134 2-90 (117)
186 3rkv_A Putative peptidylprolyl 98.0 4.3E-05 1.5E-09 59.2 9.7 62 174-235 64-125 (162)
187 2if4_A ATFKBP42; FKBP-like, al 98.0 3E-05 1E-09 68.2 9.5 148 69-236 178-328 (338)
188 2if4_A ATFKBP42; FKBP-like, al 97.9 4E-05 1.4E-09 67.4 9.1 147 106-273 180-326 (338)
189 3q7a_A Farnesyltransferase alp 97.9 0.0028 9.7E-08 55.4 20.5 175 35-223 63-258 (349)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00022 7.6E-09 63.5 13.4 126 27-162 224-362 (370)
191 3n71_A Histone lysine methyltr 97.8 7.1E-05 2.4E-09 69.0 10.2 123 79-201 318-463 (490)
192 2l6j_A TPR repeat-containing p 97.8 3.8E-05 1.3E-09 54.9 6.6 96 68-167 2-104 (111)
193 3rkv_A Putative peptidylprolyl 97.8 0.00057 1.9E-08 52.7 13.6 107 26-134 11-126 (162)
194 2hr2_A Hypothetical protein; a 97.8 0.00011 3.8E-09 56.4 8.5 114 71-210 12-139 (159)
195 1na3_A Designed protein CTPR2; 97.6 0.00042 1.4E-08 47.2 9.2 79 141-219 9-89 (91)
196 2kat_A Uncharacterized protein 97.6 0.00026 8.9E-09 51.1 8.4 62 140-201 18-81 (115)
197 2l6j_A TPR repeat-containing p 97.6 0.00013 4.6E-09 51.9 6.8 66 141-206 4-71 (111)
198 3ma5_A Tetratricopeptide repea 97.6 0.00047 1.6E-08 48.5 9.2 64 172-235 6-69 (100)
199 1klx_A Cysteine rich protein B 97.6 0.0028 9.7E-08 47.5 13.9 110 5-134 9-126 (138)
200 2uy1_A Cleavage stimulation fa 97.6 0.0097 3.3E-07 55.0 20.0 202 8-235 196-412 (493)
201 2kat_A Uncharacterized protein 97.6 0.00078 2.7E-08 48.5 10.1 80 44-134 3-82 (115)
202 2uy1_A Cleavage stimulation fa 97.5 0.014 4.7E-07 53.9 19.9 172 43-233 196-380 (493)
203 3qww_A SET and MYND domain-con 97.5 0.00025 8.5E-09 64.3 7.5 81 154-234 311-409 (433)
204 1klx_A Cysteine rich protein B 97.4 0.001 3.4E-08 50.0 9.7 111 83-202 8-126 (138)
205 1zu2_A Mitochondrial import re 97.4 0.00031 1.1E-08 53.9 6.6 99 4-115 15-134 (158)
206 1na3_A Designed protein CTPR2; 97.4 0.0025 8.7E-08 43.1 10.6 61 72-133 11-71 (91)
207 3ma5_A Tetratricopeptide repea 97.4 0.00099 3.4E-08 46.8 8.5 85 68-153 5-89 (100)
208 3qwp_A SET and MYND domain-con 97.4 0.00048 1.6E-08 62.5 8.3 87 148-234 294-398 (429)
209 1dce_A Protein (RAB geranylger 97.4 0.0089 3.1E-07 56.2 17.1 167 6-188 44-241 (567)
210 3qww_A SET and MYND domain-con 97.2 0.002 6.9E-08 58.4 10.5 85 117-201 310-410 (433)
211 3qwp_A SET and MYND domain-con 97.1 0.0067 2.3E-07 54.9 13.2 91 111-201 293-399 (429)
212 1zu2_A Mitochondrial import re 96.9 0.004 1.4E-07 47.6 7.9 85 37-133 13-119 (158)
213 3bee_A Putative YFRE protein; 96.8 0.012 4.2E-07 40.6 9.1 68 171-238 4-74 (93)
214 2kc7_A BFR218_protein; tetratr 96.7 0.0076 2.6E-07 41.6 8.1 63 148-210 7-72 (99)
215 3ly7_A Transcriptional activat 96.6 0.04 1.4E-06 48.3 12.8 36 22-57 190-230 (372)
216 2kc7_A BFR218_protein; tetratr 96.4 0.011 3.7E-07 40.8 7.1 59 179-237 6-65 (99)
217 3ly7_A Transcriptional activat 96.4 0.091 3.1E-06 46.0 14.1 126 6-144 214-346 (372)
218 3mkq_A Coatomer beta'-subunit; 96.3 0.056 1.9E-06 52.8 14.0 129 74-232 633-761 (814)
219 3mkq_B Coatomer subunit alpha; 96.3 0.27 9.4E-06 38.1 14.8 128 35-199 14-141 (177)
220 1wy6_A Hypothetical protein ST 95.9 0.32 1.1E-05 35.8 14.9 140 81-239 18-157 (172)
221 1pc2_A Mitochondria fission pr 95.9 0.06 2.1E-06 40.7 9.3 88 7-105 14-104 (152)
222 3mkq_A Coatomer beta'-subunit; 95.9 0.068 2.3E-06 52.2 12.1 84 68-167 679-762 (814)
223 3bee_A Putative YFRE protein; 95.8 0.12 4.1E-06 35.4 10.0 66 24-99 4-72 (93)
224 2v5f_A Prolyl 4-hydroxylase su 95.6 0.13 4.5E-06 36.0 9.6 70 142-211 6-84 (104)
225 2v5f_A Prolyl 4-hydroxylase su 95.1 0.2 6.8E-06 35.0 9.2 77 24-105 3-79 (104)
226 3u64_A Protein TP_0956; tetrat 94.5 0.23 7.8E-06 41.9 9.3 83 157-239 179-272 (301)
227 3u64_A Protein TP_0956; tetrat 94.4 0.39 1.3E-05 40.5 10.6 85 7-102 179-272 (301)
228 1pc2_A Mitochondria fission pr 94.3 0.98 3.3E-05 34.0 11.6 65 68-133 30-99 (152)
229 4gns_B Protein CSD3, chitin bi 94.2 1.5 5.1E-05 42.3 15.4 51 183-233 347-397 (754)
230 3mkq_B Coatomer subunit alpha; 94.0 1.6 5.5E-05 33.7 15.5 126 3-168 17-142 (177)
231 2ff4_A Probable regulatory pro 93.9 0.18 6.2E-06 44.8 8.2 69 176-244 174-247 (388)
232 2ff4_A Probable regulatory pro 92.4 0.81 2.8E-05 40.6 9.9 67 108-176 174-248 (388)
233 1v54_E Cytochrome C oxidase po 92.0 2 6.7E-05 29.7 9.0 64 85-150 25-88 (109)
234 1nzn_A CGI-135 protein, fissio 91.8 1.4 4.7E-05 32.0 8.7 67 24-98 33-102 (126)
235 1wy6_A Hypothetical protein ST 91.4 3.3 0.00011 30.5 14.0 78 83-167 74-151 (172)
236 4b4t_P 26S proteasome regulato 91.2 8.2 0.00028 34.8 18.3 187 5-200 30-245 (445)
237 4gns_B Protein CSD3, chitin bi 90.4 6.6 0.00023 37.9 14.4 128 30-169 252-399 (754)
238 4h7y_A Dual specificity protei 90.1 3.8 0.00013 30.7 9.8 36 68-104 11-52 (161)
239 4h7y_A Dual specificity protei 90.0 0.92 3.2E-05 34.0 6.5 101 104-207 12-128 (161)
240 1nzn_A CGI-135 protein, fissio 89.9 2.9 9.8E-05 30.3 8.9 79 86-167 17-100 (126)
241 1v54_E Cytochrome C oxidase po 89.6 2.9 9.9E-05 28.9 8.1 48 168-215 40-87 (109)
242 3lvg_A Clathrin heavy chain 1; 89.1 0.0022 7.6E-08 57.8 -9.6 179 71-271 55-254 (624)
243 2y69_E Cytochrome C oxidase su 88.7 4.6 0.00016 29.5 9.0 64 85-150 68-131 (152)
244 4fhn_B Nucleoporin NUP120; pro 87.9 2.1 7.3E-05 43.8 9.7 145 111-267 818-992 (1139)
245 3ffl_A Anaphase-promoting comp 86.7 6.1 0.00021 30.1 9.3 58 76-133 26-91 (167)
246 2y69_E Cytochrome C oxidase su 84.2 7.4 0.00025 28.5 8.1 49 167-215 82-130 (152)
247 4b4t_P 26S proteasome regulato 83.0 26 0.00088 31.5 18.4 187 40-234 30-245 (445)
248 1k1a_A B-cell lymphoma 3-encod 82.4 7.1 0.00024 31.1 8.9 190 33-241 13-210 (241)
249 3o48_A Mitochondria fission 1 81.1 14 0.00047 27.0 9.7 72 23-105 37-111 (134)
250 2p58_C Putative type III secre 79.7 12 0.00041 25.8 7.4 48 80-133 50-97 (116)
251 3lvg_A Clathrin heavy chain 1; 77.6 0.00042 1.4E-08 62.3 -19.2 143 27-194 55-220 (624)
252 4fhn_B Nucleoporin NUP120; pro 77.2 68 0.0023 32.8 17.6 132 25-160 841-990 (1139)
253 4b4t_R RPN7, 26S proteasome re 76.9 33 0.0011 30.5 12.1 96 72-167 133-234 (429)
254 2uwj_G Type III export protein 76.8 11 0.00039 25.8 6.6 46 81-132 50-95 (115)
255 2uwj_G Type III export protein 75.5 17 0.00058 25.0 7.7 82 119-206 20-101 (115)
256 3eu9_A Huntingtin-interacting 75.3 3.3 0.00011 33.0 4.6 203 13-237 24-237 (240)
257 2p58_C Putative type III secre 74.3 18 0.00063 24.8 8.2 81 119-205 21-101 (116)
258 1wdy_A 2-5A-dependent ribonucl 74.0 12 0.00042 30.4 8.1 20 148-167 152-171 (285)
259 1zbp_A Hypothetical protein VP 73.8 37 0.0013 28.1 11.5 50 82-132 9-58 (273)
260 3ffl_A Anaphase-promoting comp 73.7 20 0.00068 27.2 8.1 57 110-166 25-88 (167)
261 1y8m_A FIS1; mitochondria, unk 72.2 27 0.00092 25.8 11.7 72 23-105 36-110 (144)
262 3esl_A Checkpoint serine/threo 70.7 36 0.0012 26.7 10.4 56 41-104 94-149 (202)
263 3kea_A K1L; tropism, ANK repea 70.0 15 0.0005 30.5 7.6 209 4-243 9-224 (285)
264 1zbp_A Hypothetical protein VP 69.1 15 0.00052 30.4 7.0 57 150-206 6-64 (273)
265 4ady_A RPN2, 26S proteasome re 68.7 97 0.0033 30.8 14.4 221 4-235 387-622 (963)
266 2qx5_A Nucleoporin NIC96; mRNA 68.4 82 0.0028 29.9 12.8 209 4-233 307-564 (661)
267 1y8m_A FIS1; mitochondria, unk 66.2 28 0.00095 25.7 7.3 52 5-56 56-107 (144)
268 3lpz_A GET4 (YOR164C homolog); 65.1 66 0.0023 27.6 22.7 191 5-234 10-214 (336)
269 3o48_A Mitochondria fission 1 64.9 38 0.0013 24.6 8.5 70 102-172 37-110 (134)
270 3txn_A 26S proteasome regulato 63.5 78 0.0027 27.8 15.3 168 27-201 20-209 (394)
271 2wvi_A Mitotic checkpoint seri 60.3 41 0.0014 25.4 7.5 53 88-141 78-131 (164)
272 1wdy_A 2-5A-dependent ribonucl 60.0 15 0.00053 29.8 5.8 58 180-242 223-281 (285)
273 3esl_A Checkpoint serine/threo 57.8 67 0.0023 25.2 10.3 54 187-240 93-148 (202)
274 4b4t_R RPN7, 26S proteasome re 56.4 1.1E+02 0.0037 27.2 15.8 102 28-136 133-239 (429)
275 2wpv_A GET4, UPF0363 protein Y 54.4 99 0.0034 26.2 22.2 188 7-234 13-215 (312)
276 4a1g_A Mitotic checkpoint seri 53.7 66 0.0023 23.9 9.9 50 89-139 84-134 (152)
277 4b4t_S RPN3, 26S proteasome re 52.3 41 0.0014 30.8 7.4 124 69-198 230-366 (523)
278 3t8k_A Uncharacterized protein 51.3 38 0.0013 25.9 6.3 128 3-140 15-148 (186)
279 3ljn_A Hypothetical protein; a 50.6 24 0.00083 30.2 5.7 156 23-198 15-195 (364)
280 3e3v_A Regulatory protein RECX 49.7 84 0.0029 24.0 9.4 118 43-172 50-168 (177)
281 1qsa_A Protein (soluble lytic 49.2 1.7E+02 0.0059 27.4 17.4 19 182-200 328-346 (618)
282 4aez_C MAD3, mitotic spindle c 49.2 62 0.0021 25.8 7.2 55 86-141 130-185 (223)
283 2nsz_A Programmed cell death p 49.0 64 0.0022 23.1 6.8 67 72-140 9-77 (129)
284 3t8k_A Uncharacterized protein 48.8 33 0.0011 26.3 5.6 93 36-141 13-109 (186)
285 3kea_A K1L; tropism, ANK repea 48.7 15 0.00052 30.4 3.9 134 13-166 46-183 (285)
286 3hra_A Ankyrin repeat family p 48.4 36 0.0012 25.9 5.9 153 80-241 12-172 (201)
287 2d2s_A Exocyst complex compone 47.3 75 0.0026 25.6 7.6 29 206-234 90-118 (235)
288 2nsz_A Programmed cell death p 47.2 70 0.0024 22.9 6.8 68 28-105 9-78 (129)
289 1k1a_A B-cell lymphoma 3-encod 45.3 48 0.0016 26.0 6.4 155 77-241 13-177 (241)
290 2ion_A PDCD4, programmed cell 44.9 26 0.00088 26.2 4.2 25 144-168 12-36 (152)
291 2ion_A PDCD4, programmed cell 44.6 91 0.0031 23.1 7.2 67 28-104 11-79 (152)
292 4gq2_M Nucleoporin NUP120; bet 43.7 2.3E+02 0.0077 28.3 11.9 22 146-167 845-866 (950)
293 2wpv_A GET4, UPF0363 protein Y 42.8 1.5E+02 0.0052 25.0 15.0 138 71-227 34-188 (312)
294 3lpz_A GET4 (YOR164C homolog); 41.6 1.7E+02 0.0057 25.1 16.5 134 72-224 37-184 (336)
295 3bu8_A Telomeric repeat-bindin 41.2 1E+02 0.0035 24.4 7.1 53 121-173 88-147 (235)
296 3aji_A 26S proteasome non-ATPa 40.1 34 0.0012 26.7 4.6 9 38-46 15-23 (231)
297 2ijq_A Hypothetical protein; s 39.3 56 0.0019 24.6 5.2 52 3-54 44-103 (161)
298 3txn_A 26S proteasome regulato 39.1 2E+02 0.0068 25.2 21.8 212 2-239 110-346 (394)
299 3utm_A Tankyrase-1; tankyrase, 38.7 1.5E+02 0.0052 24.5 8.9 80 33-128 62-144 (351)
300 3b7b_A Euchromatic histone-lys 38.6 43 0.0015 26.3 5.0 21 215-235 215-235 (237)
301 4aez_C MAD3, mitotic spindle c 37.2 1.3E+02 0.0043 24.1 7.2 50 191-240 132-183 (223)
302 1n11_A Ankyrin; clathrin, BAND 37.2 51 0.0017 28.9 5.7 45 12-60 28-74 (437)
303 4a1g_A Mitotic checkpoint seri 36.0 1.3E+02 0.0045 22.3 9.3 49 192-240 84-134 (152)
304 1bd8_A P19INK4D CDK4/6 inhibit 35.1 32 0.0011 24.9 3.4 17 35-51 8-24 (156)
305 2r9g_A AAA ATPase, central reg 35.0 1.6E+02 0.0055 23.0 9.9 42 76-118 17-61 (204)
306 2yru_A Steroid receptor RNA ac 34.8 68 0.0023 22.7 4.8 43 13-55 48-90 (118)
307 3utm_A Tankyrase-1; tankyrase, 34.1 1.9E+02 0.0065 23.9 8.7 117 28-166 24-146 (351)
308 2qq8_A TBC1 domain family memb 32.9 99 0.0034 26.3 6.6 78 85-167 169-254 (334)
309 2fe3_A Peroxide operon regulat 32.7 1.4E+02 0.0048 21.6 6.8 20 148-167 28-47 (145)
310 4ady_A RPN2, 26S proteasome re 32.7 3.9E+02 0.013 26.7 17.7 176 8-200 471-656 (963)
311 2b7e_A PRE-mRNA processing pro 32.4 36 0.0012 20.7 2.6 29 87-115 3-31 (59)
312 3bge_A Predicted ATPase; struc 32.3 1.8E+02 0.0061 22.7 7.9 41 75-115 9-52 (201)
313 1qsa_A Protein (soluble lytic 31.6 3.3E+02 0.011 25.5 11.5 137 82-225 18-154 (618)
314 3jxi_A Vanilloid receptor-rela 31.5 1.3E+02 0.0046 23.7 7.0 196 33-237 9-252 (260)
315 3r88_A Anthranilate phosphorib 30.9 78 0.0027 27.6 5.6 67 173-239 23-91 (377)
316 3aji_A 26S proteasome non-ATPa 30.6 77 0.0026 24.6 5.3 15 151-165 113-127 (231)
317 2wvi_A Mitotic checkpoint seri 30.4 1.7E+02 0.0059 22.0 9.2 50 192-241 79-130 (164)
318 1bd8_A P19INK4D CDK4/6 inhibit 30.0 54 0.0018 23.6 4.0 140 77-231 6-154 (156)
319 1mzb_A Ferric uptake regulatio 29.8 1.4E+02 0.0048 21.3 6.1 59 96-156 9-68 (136)
320 2dod_A Transcription elongatio 29.2 71 0.0024 20.9 3.8 20 121-140 16-35 (82)
321 3eu9_A Huntingtin-interacting 28.8 71 0.0024 24.8 4.8 110 36-166 16-131 (240)
322 2fu4_A Ferric uptake regulatio 28.8 1.1E+02 0.0039 19.3 6.3 62 94-157 6-68 (83)
323 4b4t_S RPN3, 26S proteasome re 27.8 92 0.0032 28.5 5.6 67 141-207 231-304 (523)
324 2w57_A Ferric uptake regulatio 27.4 1.7E+02 0.0057 21.4 6.3 58 96-155 8-66 (150)
325 3b7b_A Euchromatic histone-lys 27.3 1.1E+02 0.0038 23.7 5.7 180 33-241 15-204 (237)
326 2d2s_A Exocyst complex compone 27.1 2.4E+02 0.0083 22.6 13.3 102 75-180 23-142 (235)
327 2ijq_A Hypothetical protein; s 27.1 2E+02 0.0068 21.6 8.4 61 28-98 35-103 (161)
328 1wgl_A TOLL-interacting protei 27.0 72 0.0025 19.3 3.3 25 218-242 34-58 (59)
329 1bpo_A Protein (clathrin); cla 26.6 2E+02 0.0068 26.0 7.3 83 155-237 343-425 (494)
330 3ygs_P Procaspase 9; apoptosis 25.7 1.3E+02 0.0043 20.2 4.9 63 13-90 26-88 (97)
331 2yru_A Steroid receptor RNA ac 25.7 92 0.0031 22.0 4.2 43 92-134 48-90 (118)
332 1mzb_A Ferric uptake regulatio 25.3 1.9E+02 0.0064 20.6 6.5 43 15-58 7-50 (136)
333 3ctd_A Putative ATPase, AAA fa 24.2 2.6E+02 0.009 22.0 8.9 44 74-117 36-82 (213)
334 2l0z_A Glycoprotein G2; zinc-b 23.5 27 0.00094 19.2 0.8 11 341-351 19-29 (42)
335 3jxi_A Vanilloid receptor-rela 23.3 91 0.0031 24.8 4.5 162 77-240 9-211 (260)
336 3eyy_A Putative iron uptake re 23.3 1.3E+02 0.0045 21.8 5.0 51 136-188 14-67 (145)
337 3eiq_C Programmed cell death p 22.6 3.7E+02 0.013 23.2 8.2 95 30-134 221-321 (358)
338 2rg8_A Programmed cell death p 22.5 1.2E+02 0.004 22.8 4.6 26 73-98 13-38 (165)
339 2w57_A Ferric uptake regulatio 22.5 2.3E+02 0.0078 20.6 6.7 43 15-58 6-49 (150)
340 2xig_A Ferric uptake regulatio 22.4 2.3E+02 0.0078 20.6 7.2 67 87-155 9-75 (150)
341 3eyy_A Putative iron uptake re 21.9 2E+02 0.0069 20.8 5.8 42 15-58 8-49 (145)
342 3i5p_A Nucleoporin NUP170; hel 21.7 4.7E+02 0.016 23.9 12.0 69 171-239 176-249 (525)
343 2fe3_A Peroxide operon regulat 21.4 2.4E+02 0.008 20.4 6.9 62 95-158 12-73 (145)
344 3ljn_A Hypothetical protein; a 21.3 1.1E+02 0.0037 25.9 4.8 199 12-232 34-266 (364)
345 3hra_A Ankyrin repeat family p 20.5 2.7E+02 0.0091 20.6 7.6 145 36-201 12-166 (201)
346 2o03_A Probable zinc uptake re 20.2 1.6E+02 0.0055 20.8 4.8 41 78-118 18-58 (131)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.6e-34 Score=266.58 Aligned_cols=219 Identities=18% Similarity=0.238 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC-
Q 048142 8 EEALLLFREVQHKGLTGDK-VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ- 85 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~- 85 (352)
..+..+++++++.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+. ||.++||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~---------pd~~tyn~Li~~c~~~~~~ 77 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ---------LSQYHYNVLLYVCSLAEAA 77 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC---------CCHHHHHHHHHHHTTCCCC
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------CCHhHHHHHHHHHHhCCch
Confidence 4566777888888877654 46889999999999999999999999999999 899999999999998765
Q ss_pred --------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCH
Q 048142 86 --------GNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157 (352)
Q Consensus 86 --------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 157 (352)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. |+.||..+||+||.+|++.|++
T Consensus 78 ~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 78 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCH
Confidence 6889999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcchHHHHHHHHhhcC------ChHHHH
Q 048142 158 AKAEELIKNM---PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-LLPDNGGSYVILSNRYSSSR------KWKKVK 227 (352)
Q Consensus 158 ~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g------~~~~a~ 227 (352)
++|.++|++| |+.||..||++||.+|++.|++++|.+++++|.+ +..|+..||+.++..|+..+ ...++.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~ 236 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVK 236 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhhhh
Confidence 9999999999 8999999999999999999999999999999987 67899999999999987643 222355
Q ss_pred HHHHHHHhc
Q 048142 228 RIRELMAER 236 (352)
Q Consensus 228 ~~~~~m~~~ 236 (352)
.+...+...
T Consensus 237 ~~~~~~~~~ 245 (501)
T 4g26_A 237 KIRDAVVSG 245 (501)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhHhcc
Confidence 555555543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-33 Score=262.93 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=169.9
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCCCccccccCCcHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGA---------LEVGMWLHPYIMKKNIEVDVGLGMALKDVM 71 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 71 (352)
|++.|++++|+++|++|...|++||..|||+||.+|++.+. ++.|.++|++|.+.|+. ||.+
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~---------Pd~~ 106 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV---------PNEA 106 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC---------CCHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC---------CCHH
Confidence 78999999999999999999999999999999999987664 68899999999999999 8999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+. |+.||..||++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred HHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhc
Q 048142 152 GRAGRIAKAEELIKNM---PMALDHFVLGGLLGACRIH 186 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~ 186 (352)
++.|++++|.++|++| +..|+..||+.++..++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999 8899999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=4.2e-25 Score=210.92 Aligned_cols=291 Identities=10% Similarity=-0.066 Sum_probs=241.6
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
|.+.|++++|.++|++|... +++..+|+.++.++.+.|++++|.++|+++.+.+. .+..+|+.++.+|
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP----------YNLDVYPLHLASL 349 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCCTTHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc----------ccHHHHHHHHHHH
Confidence 45678999999999999875 57999999999999999999999999999998764 3556899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
.+.|++++|.++|+++.+. .+.+..+++.+...|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++|
T Consensus 350 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999865 3557889999999999999999999999999864 233688999999999999999999
Q ss_pred HHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc--
Q 048142 161 EELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAER-- 236 (352)
Q Consensus 161 ~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 236 (352)
.++|+++ ... .+..+|+.++.+|...|++++|.++|+++.+..|.++.+|+.++..|.+.|++++|.++|+++.+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 9999987 333 478999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --CCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEcccccccC
Q 048142 237 --NIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314 (352)
Q Consensus 237 --g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~ 314 (352)
+..|+. ....+..+...+.+.|..++|..++..+.+....... .+ . .+...+...|+
T Consensus 507 ~~~~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~-~-----------------~l~~~~~~~g~ 565 (597)
T 2xpi_A 507 KTQSNEKP--WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN-VH-T-----------------AIALVYLHKKI 565 (597)
T ss_dssp HSCCCSGG--GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH-HH-H-----------------HHHHHHHHTTC
T ss_pred ccccchhh--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH-HH-H-----------------HHHHHHHHhCC
Confidence 666652 1122334566688999999999999876543221110 00 0 11123556788
Q ss_pred ccchhHHHhhhhc
Q 048142 315 CHTATNIISKVYN 327 (352)
Q Consensus 315 ~~~a~~~~~~~~~ 327 (352)
.++|.+.+.++..
T Consensus 566 ~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 566 PGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999998887765
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.4e-21 Score=186.42 Aligned_cols=258 Identities=12% Similarity=0.064 Sum_probs=215.8
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
|.+.|++++|+++|+++...+ +.+..+|+.++.++.+.|++++|.++++++.+... .+..+|+.++..|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP----------EKAVTWLAVGIYY 383 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc----------ccHHHHHHHHHHH
Confidence 357899999999999999765 34778899999999999999999999999987653 5678999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++|
T Consensus 384 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999875 2335779999999999999999999999999863 344788999999999999999999
Q ss_pred HHHHHhC-C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCC--cchHHHHHHHHhhcCChHHHHHHHH
Q 048142 161 EELIKNM-P-MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELL-----PDN--GGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 161 ~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~--~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
.++|+++ . ...+..+|+.++..+.+.|++++|.++|+++.+.. .|+ ..+|..++.+|.+.|++++|.++++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998 2 23468899999999999999999999999987651 333 5789999999999999999999999
Q ss_pred HHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHH
Q 048142 232 LMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEK 277 (352)
Q Consensus 232 ~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 277 (352)
++.+.+ |+.. ..+..+...+.+.|+.++|..++..+.+...
T Consensus 541 ~~~~~~--p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 541 QGLLLS--TNDA---NVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHS--SCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhC--CCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 998765 4322 2223455668899999999999988766543
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=6.5e-22 Score=190.52 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH---cCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMK---KNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
..|||+||++||+.|++++|.++|++|.+ .|+. ||++|||+||.+||+.|++++|.++|++|.+.|+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~---------PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL---------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC---------CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999988764 5777 99999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhccCCH-HHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--C--CcHHHHH
Q 048142 103 PDAITFVGVLVACSHAGLV-DERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPM--A--LDHFVLG 177 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~-~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~--p~~~~~~ 177 (352)
||.+|||+||.++|+.|+. ++|.++|++|.++ |+.||..+|++++..+.+.+-++...++...+.- . |.+.+..
T Consensus 198 PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~ 276 (1134)
T 3spa_A 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSK 276 (1134)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCT
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchH
Confidence 9999999999999999984 7899999999998 9999999999999988887655555555444411 1 1134445
Q ss_pred HHHHHHHhcC---------CHHHHHHHHHHH
Q 048142 178 GLLGACRIHD---------NLEAAERAAQQL 199 (352)
Q Consensus 178 ~li~~~~~~g---------~~~~a~~~~~~~ 199 (352)
.|...|.+.+ ..++-..+|++-
T Consensus 277 LL~dl~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 277 LLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp TTHHHHCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHccCCCCcCccccCCHHHHHHHHHHH
Confidence 5556666554 245666666653
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=9.8e-21 Score=182.42 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQI---RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
-..+||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+. |+.||..|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHH
Confidence 346899999999999999999999988764 589999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCcchHHHHHH
Q 048142 146 CLVYILGRAGRI-AKAEELIKNM---PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLP------DNGGSYVILSN 215 (352)
Q Consensus 146 ~li~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~li~ 215 (352)
+||+++++.|+. ++|.++|++| |+.||.++|++++.++.+. ..++..+++..... +...+...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 999999999985 7899999999 8999999999999766543 33344444422222 23556677888
Q ss_pred HHhhcC
Q 048142 216 RYSSSR 221 (352)
Q Consensus 216 ~~~~~g 221 (352)
.|++.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 888766
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=2.3e-19 Score=162.14 Aligned_cols=282 Identities=11% Similarity=0.045 Sum_probs=148.2
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
+.|++++|...++..... .+.+..+|..+...+.+.|++++|...|+++.+... .+..+|..+..++.+
T Consensus 45 ~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP----------DFIDGYINLAAALVA 113 (388)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc----------chHHHHHHHHHHHHH
Confidence 456666666666666553 233556666666666666666666666666665432 233456666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 160 (352)
.|++++|++.|+++.+. .|+ ...+..+...+...|++++|...|+++.+. .| +..+|..+...|.+.|++++|
T Consensus 114 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666665553 233 233444555555556666666666555543 22 345555555555555555555
Q ss_pred HHHHHhC-----------------------------------CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 161 EELIKNM-----------------------------------PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 161 ~~~~~~m-----------------------------------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
...|+++ ...| +..+|..+...+...|++++|...++++.+..|
T Consensus 189 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555554 1222 244455555555555555555555555555555
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHhhhhhhh
Q 048142 205 DNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETALNLH 284 (352)
Q Consensus 205 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 284 (352)
.++.+|..+...|.+.|++++|.+.++++.+.. |+... .+..+...+.+.|..++|...+..+.+.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~--------- 334 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHAD---SLNNLANIKREQGNIEEAVRLYRKALEV--------- 334 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHTTS---------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc---------
Confidence 555555555555555555555555555554432 21110 1112223344555555555554433221
Q ss_pred hHHHHHHHhhhCCCCCCc---EEEEcccccccCccchhHHHhhhhc
Q 048142 285 TEKLAITFGLVSPMPGVL---IRIIKNLRVCNDCHTATNIISKVYN 327 (352)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~---i~~~~~l~~~~~~~~a~~~~~~~~~ 327 (352)
.|... ..+...+...|+..+|.+.+.++..
T Consensus 335 -------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 335 -------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp -------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred -------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11110 0112335567889999999888765
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.81 E-value=6.4e-19 Score=162.11 Aligned_cols=256 Identities=10% Similarity=0.028 Sum_probs=211.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+.+|+++.... +.+..+|..+..++...|++++|...++++.+.+. .+...|..+...|.
T Consensus 37 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM----------DFTAARLQRGHLLL 105 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHH
Confidence 46799999999999998752 44788999999999999999999999999998764 46678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH----hHHHHH------------HHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDA----ITFVGV------------LVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
+.|++++|.+.|+++.+. .|+. .++..+ ...+...|++++|...|+++.+. .+.+...+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 181 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRE 181 (450)
T ss_dssp HTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 999999999999999874 4543 455555 34488899999999999999874 234788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHH----------
Q 048142 146 CLVYILGRAGRIAKAEELIKNM-PM-ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVIL---------- 213 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l---------- 213 (352)
.+..+|.+.|++++|..+|+++ .. ..+..+|..+...+...|++++|...++++.+..|.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 22 24688999999999999999999999999999888888777766
Q ss_pred --HHHHhhcCChHHHHHHHHHHHhcCCCCCCcee-EEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 214 --SNRYSSSRKWKKVKRIRELMAERNIKKPPGCI-LIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 214 --i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
...|...|++++|.+.|+++.+.. |+.... ...+..+...+.+.|..++|...+..+.+
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999998743 332111 11222344567789999999998876543
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.80 E-value=3.7e-17 Score=147.61 Aligned_cols=253 Identities=14% Similarity=0.040 Sum_probs=213.9
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD-KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
.+.|++++|++.|+++... .|+ ...+..+...+...|++++|.+.|+++.+... .+..+|+.+...|
T Consensus 112 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~ 179 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP----------NFAVAWSNLGCVF 179 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHH
Confidence 4578999999999999875 454 55677788888999999999999999998653 4567899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~ 159 (352)
.+.|++++|++.|+++.+.+ +.+...|..+...+...|++++|...+++.... .| +..++..+...|.+.|++++
T Consensus 180 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998853 234677889999999999999999999998764 45 57889999999999999999
Q ss_pred HHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 160 AEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 160 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
|.+.|+++ ...| +..+|..+...+...|++++|...++++.+..|.+..++..+...+.+.|++++|.+.++++.+.
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 334 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 99999987 3445 47789999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHH
Q 048142 238 IKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 238 ~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 275 (352)
.|+... ....+...+.+.|..++|...+..+.+.
T Consensus 335 -~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 335 -FPEFAA---AHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp -CTTCHH---HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred -CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344322 2344566788999999999998876543
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=4.5e-17 Score=145.78 Aligned_cols=222 Identities=12% Similarity=0.024 Sum_probs=182.5
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|++.|+++.... +.+..+|..+...+...|++++|...|+++.+... .+..+|..+...|.
T Consensus 76 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP----------NNLKALMALAVSYT 144 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHH
Confidence 35689999999999998863 34788999999999999999999999999988653 45778999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-----------hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDA-----------ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
..|++++|++.|+++.+. .|+. ..+..+...+...|++++|...++++.+...-.++..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999874 2332 223345788899999999999999998762222268889999999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHH
Q 048142 151 LGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKR 228 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 228 (352)
|.+.|++++|...|+++ ...| +..+|..+...+...|++++|...+++..+..|.+..+|..+...|...|++++|.+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999987 2233 588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 048142 229 IRELMAER 236 (352)
Q Consensus 229 ~~~~m~~~ 236 (352)
.|++..+.
T Consensus 303 ~~~~al~~ 310 (365)
T 4eqf_A 303 NFLTALSL 310 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998753
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.75 E-value=3.6e-16 Score=143.69 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=130.4
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 048142 36 CTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVAC 115 (352)
Q Consensus 36 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 115 (352)
+...|++++|...++++.+... .+...|..+..+|.+.|++++|++.|+++.+. .+.+..++..+...+
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCV----------WDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC----------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 4444444444444444444321 45667777888888888888888888887764 234567777888888
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHH------------HHHHHHcCCHHHHHHHHHhC-CCCCc-----HHHH
Q 048142 116 SHAGLVDERISHFNLMSEKYGIRP-SIEHYGCL------------VYILGRAGRIAKAEELIKNM-PMALD-----HFVL 176 (352)
Q Consensus 116 ~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~ 176 (352)
...|++++|...|+++.+. .| +...+..+ ...|.+.|++++|...|+++ ...|+ ...|
T Consensus 222 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 298 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSK 298 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 8888888888888887753 34 33344433 67777888888888888776 22333 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 177 GGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..+...+...|++++|...++++.+..|.+..+|..+..+|...|++++|.+.+++..+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 77777888888888888888888777777778888888888888888888888887766
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=6.1e-16 Score=138.21 Aligned_cols=256 Identities=13% Similarity=-0.023 Sum_probs=181.8
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+..|+++.... +.+..+|..+...+...|++++|...++++.+... .+..+|..+...|.
T Consensus 75 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP----------DNQTALMALAVSFT 143 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHH
Confidence 35688888888888888753 33677788888888888888888888888887653 45667888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-hHHHH---------------HHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDA-ITFVG---------------VLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~---------------ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
..|++++|++.|+++.... |+. ..+.. .+..+...|++++|...++++.+...-.++..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 8888888888888887753 322 22211 23333477888888888888876522222477888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 146 CLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
.+...|.+.|++++|...|+++ ...| +..+|..+...+...|++++|...+++..+..|.+..++..+...|.+.|++
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 8888888888888888888876 2233 4778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCC---CC---ceeEEEEcceeehhhhcCcccCchhhhh
Q 048142 224 KKVKRIRELMAERNIKK---PP---GCILIEVDGVVHEFVKAGFVPNKSEVLF 270 (352)
Q Consensus 224 ~~a~~~~~~m~~~g~~p---~~---~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 270 (352)
++|.+.+++..+..... .. ......+..+...+...|..+.+..+..
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 88888888876532111 00 0001112223444556677776666654
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=2.1e-16 Score=138.64 Aligned_cols=258 Identities=12% Similarity=-0.040 Sum_probs=206.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+.+|+++.... +.+..++..+...+...|++++|...++++.+... .+...|..+...|.
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----------KDIAVHAALAVSHT 100 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----------CCHHHHHHHHHHHH
Confidence 35799999999999998863 33778889999999999999999999999998753 46678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-hHHHHH--------------HH-HHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDA-ITFVGV--------------LV-ACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
..|++++|++.|++..+. .|+. ..+..+ .. .+...|++++|...++++.+. .+.+...+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 176 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHA 176 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 999999999999999875 3333 333333 22 377889999999999999875 233778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 146 CLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
.+...|.+.|++++|...++++ ...| +..+|..+...+...|++++|...+++..+..|.+..++..+...|...|++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999999987 2233 5788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCce-------eEEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 224 KKVKRIRELMAERNIKKPPGC-------ILIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 224 ~~a~~~~~~m~~~g~~p~~~~-------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
++|.+.+++..+......... .......+...+.+.|..+.|..++....+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999876443211000 111222344556788988888888876554
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.3e-16 Score=136.81 Aligned_cols=253 Identities=11% Similarity=0.010 Sum_probs=208.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..|++++|+++|+++.... +.+...+..++..+...|++++|..+++++.+... .+...|..+...+..
T Consensus 34 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP----------SNPVSWFAVGCYYLM 102 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TSTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----------CCHHHHHHHHHHHHH
Confidence 5699999999999998763 33566677788888999999999999999998653 355689999999999
Q ss_pred cC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 83 CG-QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 83 ~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
.| ++++|.+.|++..+.. +.+...|..+...+...|++++|...+++..+. . +.+...+..+...|...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-M-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-c-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 99 9999999999998753 335677899999999999999999999999875 2 234667778999999999999999
Q ss_pred HHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 162 ELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELL---------PDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 162 ~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
..+++. ...| +...|..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|.+.+
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999987 4444 47889999999999999999999999987753 556779999999999999999999999
Q ss_pred HHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 231 ELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 231 ~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
++..+.. |+.. ..+..+...+.+.|..++|...+....+
T Consensus 260 ~~a~~~~--~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 260 RQALVLI--PQNA---STYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHS--TTCS---HHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHhhC--ccch---HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9998754 3311 1122344557789999999999887654
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=2.6e-16 Score=139.66 Aligned_cols=290 Identities=9% Similarity=0.011 Sum_probs=222.5
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|++.|+++.... +.+..++..+...+...|++++|...++++.+... .+...|..+...|.
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM----------DFTAARLQRGHLLL 82 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------CcchHHHHHHHHHH
Confidence 46799999999999998853 34688899999999999999999999999998753 35678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC----CHhHHHHH------------HHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKP----DAITFVGV------------LVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
..|++++|...|++..+. .| +...+..+ ...+...|++++|...++++.+. .+.+...+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 158 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRE 158 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHH
Confidence 999999999999999874 45 34444444 57888999999999999999874 234678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHH----------
Q 048142 146 CLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVIL---------- 213 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l---------- 213 (352)
.+...|...|++++|...++++ ...| +..+|..+...+...|++++|...+++..+..|.+...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 3344 588899999999999999999999999999888887765533
Q ss_pred --HHHHhhcCChHHHHHHHHHHHhcCCCCCCceeE-EEEcceeehhhhcCcccCchhhhhcCCHHHHhhhhhhhhHHHHH
Q 048142 214 --SNRYSSSRKWKKVKRIRELMAERNIKKPPGCIL-IEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAI 290 (352)
Q Consensus 214 --i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 290 (352)
...+.+.|++++|.+.+++..+.. |+....+ .....+...+...|..++|...+....+....... . ...++
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-~~~~~- 313 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN-A-LKDRA- 313 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-H-HHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH-H-HHHHH-
Confidence 667999999999999999998754 3321111 11112345577899999999988765543211110 0 00111
Q ss_pred HHhhhCCCCCCcEEEEcccccccCccchhHHHhhhhc
Q 048142 291 TFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYN 327 (352)
Q Consensus 291 ~~~~~~~~~~~~i~~~~~l~~~~~~~~a~~~~~~~~~ 327 (352)
..+...|+.++|.+.+.+...
T Consensus 314 ----------------~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 314 ----------------EAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp ----------------HHHHHTTCHHHHHHHHHHHHT
T ss_pred ----------------HHHHHcCCHHHHHHHHHHHHh
Confidence 123445777888887776654
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.3e-15 Score=132.20 Aligned_cols=244 Identities=11% Similarity=0.032 Sum_probs=160.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDK--VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.|+++.|+..++.... ..|+. .....+..++...|+++.|...++. . +. |+..++..+...+.
T Consensus 12 ~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~----~~------~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S----SA------PELQAVRMFAEYLA 76 (291)
T ss_dssp TTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T----SC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c----CC------hhHHHHHHHHHHHc
Confidence 5777888877765543 23432 3445567777888888777764432 1 11 66677777778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
..++.++|++.++++...+..|+ ...+..+...+...|++++|...+++ ..+...+..++..|.+.|++++|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888777665554 34455566777788888888877765 34667777778888888888888
Q ss_pred HHHHHhC-CCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 161 EELIKNM-PMALDHFVL---GGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 161 ~~~~~~m-~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
...|+++ ...|+.... ...+..+...|++++|..+|+++.+..|.++..++.+..++.+.|++++|.+.+++..+.
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888777 333543211 222333445577888888888887777777778888888888888888888888877654
Q ss_pred CCCCCCceeEEEEcceeehhhhcCcccC-chhhhhcCCH
Q 048142 237 NIKKPPGCILIEVDGVVHEFVKAGFVPN-KSEVLFDMDE 274 (352)
Q Consensus 237 g~~p~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~ 274 (352)
. |+... .+..+...+...|..++ +..++..+.+
T Consensus 230 ~--p~~~~---~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 D--SGHPE---TLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp C--TTCHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C--CCCHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3 32211 12334445666777755 4566655443
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-16 Score=148.68 Aligned_cols=290 Identities=9% Similarity=-0.058 Sum_probs=221.2
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+..|+++.... |+..+|..+..++.+.|++++|...++++.+.+. .+...|..+..+|.
T Consensus 17 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP----------DYSKVLLRRASANE 84 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS----------CCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh----------HHHHHHHHHHHHHH
Confidence 46799999999999999864 8999999999999999999999999999998753 56678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCC-----------------------------------------------------------
Q 048142 82 MCGQGNKALEYFYEMQIRGVK----------------------------------------------------------- 102 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~----------------------------------------------------------- 102 (352)
+.|++++|+..|+++...+-.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999998775421
Q ss_pred ------------------CC-HhHHHHHHHHHh---ccCCHHHHHHHHHHhhHhc----CCC--------CChhHHHHHH
Q 048142 103 ------------------PD-AITFVGVLVACS---HAGLVDERISHFNLMSEKY----GIR--------PSIEHYGCLV 148 (352)
Q Consensus 103 ------------------p~-~~t~~~ll~~~~---~~g~~~~a~~~~~~m~~~~----g~~--------p~~~~~~~li 148 (352)
|+ ...+......+. +.|++++|...|+++.+.+ .-. .+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 00 222222222233 3899999999999988720 112 2456788889
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHH
Q 048142 149 YILGRAGRIAKAEELIKNM-PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVK 227 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 227 (352)
..|...|++++|...|+++ ...|+...|..+...+...|++++|...+++..+..|.+..++..+...|...|++++|.
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999987 334558888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEc
Q 048142 228 RIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIK 307 (352)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 307 (352)
+.+++..+... +.. .....+...+...|..++|...+..+......... .+ .. +-.
T Consensus 325 ~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~-~~-----------------la~ 380 (514)
T 2gw1_A 325 KDFDKAKELDP--ENI---FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE-VP-NF-----------------FAE 380 (514)
T ss_dssp HHHHHHHHTCS--SCS---HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH-HH-HH-----------------HHH
T ss_pred HHHHHHHHhCh--hhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH-HH-HH-----------------HHH
Confidence 99999987543 211 11223445577889998888888765432211110 00 00 112
Q ss_pred ccccccCccchhHHHhhhhc
Q 048142 308 NLRVCNDCHTATNIISKVYN 327 (352)
Q Consensus 308 ~l~~~~~~~~a~~~~~~~~~ 327 (352)
.+...|+..+|.+.+.++..
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 24456788888888776654
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=4e-15 Score=130.55 Aligned_cols=220 Identities=12% Similarity=0.010 Sum_probs=190.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLG-ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
+.|++++|+.+|+++.... +.+...|..+...+...| ++++|.+.++++.+... .+...|..+...|.
T Consensus 68 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 68 ELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK----------TYGPAWIAYGHSFA 136 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT----------TCTHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC----------ccHHHHHHHHHHHH
Confidence 4689999999999998853 336788899999999999 99999999999987653 34568999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
..|++++|++.|++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.
T Consensus 137 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHH
Confidence 9999999999999998863 334567778999999999999999999999853 2336788999999999999999999
Q ss_pred HHHHhC----C-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 162 ELIKNM----P-------MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 162 ~~~~~m----~-------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
..+++. + ...+..+|..+...+...|++++|...+++..+..|.+...+..+...|...|++++|.+.+
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 999876 1 12336789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 048142 231 ELMAER 236 (352)
Q Consensus 231 ~~m~~~ 236 (352)
++..+.
T Consensus 294 ~~al~~ 299 (330)
T 3hym_B 294 HTALGL 299 (330)
T ss_dssp HTTTTT
T ss_pred HHHHcc
Confidence 987653
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.9e-15 Score=125.86 Aligned_cols=216 Identities=11% Similarity=0.022 Sum_probs=184.6
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--CccccccCCcHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV--DVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~~li~~ 79 (352)
.+.|++++|+..|++..... ++..+|..+...+...|++++|...+.+..+..... +.. .....|..+...
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~ 88 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-----VISKSFARIGNA 88 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----HHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-----HHHHHHHHHHHH
Confidence 45799999999999999876 788999999999999999999999999988754210 000 015789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIA 158 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~ 158 (352)
|...|++++|++.|++.... .|+. ..+...|++++|...++.+... .| +...+..+...|...|+++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999884 4553 3466678899999999998763 44 5778889999999999999
Q ss_pred HHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 159 KAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 159 ~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
+|...|++. ... .+..+|..+...+...|++++|...+++..+..|.+..+|..+...|...|++++|.+.+++..+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999987 223 358889999999999999999999999999999999999999999999999999999999988654
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=7.2e-15 Score=121.88 Aligned_cols=198 Identities=17% Similarity=0.063 Sum_probs=161.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
+++...+..+...+.+.|++++|...+++..+... .+...|..+...+.+.|++++|+..|++..+.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P 70 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP----------QDPEALYWLARTQLKLGLVNPALENGKTLVART-P 70 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS----------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 46778889999999999999999999999987654 567789999999999999999999999998852 3
Q ss_pred CCHhHHHHHHHHHhcc-----------CCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 048142 103 PDAITFVGVLVACSHA-----------GLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PM 169 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 169 (352)
.+...+..+...+... |++++|...+++..+. .| +...+..+...|...|++++|...|++. ..
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 3567888899999999 9999999999999864 55 5788889999999999999999999987 11
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 170 ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
..+...|..+...+...|++++|...+++..+..|.+...+..+...+...|++++|.+.+++..
T Consensus 148 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 16788999999999999999999999999999999999999999999999999999999988653
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=7.1e-16 Score=137.80 Aligned_cols=253 Identities=11% Similarity=0.001 Sum_probs=195.0
Q ss_pred CCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH
Q 048142 4 DSACEEALL-LFREVQHKGL-TG--DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 4 ~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
.|++++|++ .|++...... .| +...+..+...+.+.|++++|...++++.+... .+...|..+..+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~ 107 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP----------KHMEAWQYLGTT 107 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----------TCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH
Confidence 456777777 6665543211 11 345678889999999999999999999998653 566789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHH------------
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGC------------ 146 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~------------ 146 (352)
|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+. .| +...+..
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY---TPAYAHLVTPAEEGAGGAGLGP 183 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---STTTGGGCC-------------
T ss_pred HHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHhhhhcccH
Confidence 999999999999999998863 446788999999999999999999999999874 23 2222221
Q ss_pred ---HHHHHHHcCCHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh
Q 048142 147 ---LVYILGRAGRIAKAEELIKNM----PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219 (352)
Q Consensus 147 ---li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 219 (352)
.+..+...|++++|...|+++ +..++..+|..+...+...|++++|...+++..+..|.+..+|..+...|..
T Consensus 184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 233344899999999999987 3223588999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHH
Q 048142 220 SRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 220 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 275 (352)
.|++++|.+.+++..+.. |+.. .....+...+.+.|..++|...+......
T Consensus 264 ~g~~~~A~~~~~~al~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQ--PGYI---RSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999988753 3321 11233455677899999999988766543
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=3.5e-15 Score=133.39 Aligned_cols=232 Identities=10% Similarity=-0.013 Sum_probs=187.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...|..+...+.+.|++++|...|+++.+... .+..+|..+...|.+.|++++|++.|++..+.. +.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP----------GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNN 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 345588889999999999999999999998754 567889999999999999999999999998862 345
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHhC----CC
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-----------IEHYGCLVYILGRAGRIAKAEELIKNM----PM 169 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 169 (352)
..++..+...+...|++++|...++++.+. .|+ ...+..+...|.+.|++++|..+|+++ +.
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 209 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence 788999999999999999999999999864 232 223344578899999999999999988 33
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEE
Q 048142 170 ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEV 249 (352)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~ 249 (352)
.++..+|..+...+...|++++|...+++..+..|.+..+|..+...|...|++++|.+.|++..+.. |+.. ...
T Consensus 210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~---~~~ 284 (365)
T 4eqf_A 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFI---RSR 284 (365)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH---HHH
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch---HHH
Confidence 33688999999999999999999999999999999999999999999999999999999999998753 4321 112
Q ss_pred cceeehhhhcCcccCchhhhhcCCHH
Q 048142 250 DGVVHEFVKAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 250 ~~~~~~~~~~G~~~~~~~~~~~~~~~ 275 (352)
..+...+.+.|..++|...+....+.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23445577899999999988765543
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.5e-14 Score=134.84 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=190.9
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+..|+++.... |+..++..+...+...|++++|...++++.+... .+...|..+...|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS----------NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT----------TCTHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc----------CCHHHHHHHHHHHH
Confidence 35789999999999998864 4488888999999999999999999999987643 35568999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
..|++++|+..|++..+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998853 335678889999999999999999999999874 2335778889999999999999999
Q ss_pred HHHHhC----CCCCc----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 162 ELIKNM----PMALD----HFVLGGLLGACRI---HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 162 ~~~~~m----~~~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
..++++ +..++ ..+|..+...+.. .|++++|...+++..+..|.+..++..+...|...|++++|.+.+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999887 22233 4488889999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 048142 231 ELMAERN 237 (352)
Q Consensus 231 ~~m~~~g 237 (352)
++..+..
T Consensus 473 ~~a~~~~ 479 (514)
T 2gw1_A 473 EESADLA 479 (514)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9988754
No 24
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=6.9e-14 Score=118.11 Aligned_cols=200 Identities=11% Similarity=-0.033 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
...|..+...+...|++++|.+.++++.+... .+...|..+...|...|++++|.+.|+++.+.. +.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP----------SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcH
Confidence 56788888999999999999999999988653 466789999999999999999999999998763 3367
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHH
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGA 182 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 182 (352)
..+..+...+...|++++|..+++++.+. +..| +...+..+...|.+.|++++|...|++. ...| +...|..+...
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 78889999999999999999999999862 4556 5678888999999999999999999987 2233 57888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
+...|++++|...+++..+..|.+...+..+...+...|++++|.+.++++.+..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999888898999999999999999999999999998754
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=1.8e-14 Score=125.06 Aligned_cols=215 Identities=10% Similarity=0.027 Sum_probs=179.1
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
...|++++|+..++. .-.|+..++..+...+...++.++|.+.++++...+..| .+...+..+...|.
T Consensus 45 i~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P--------~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 45 LAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDV--------TNTTFLLMAASIYF 112 (291)
T ss_dssp HHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCC--------SCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCC--------CCHHHHHHHHHHHH
Confidence 456888888876644 245678888999999999999999999999999877553 34556777889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHH---HHHHHHHHHcCCHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHY---GCLVYILGRAGRIA 158 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~---~~li~~~~~~g~~~ 158 (352)
..|++++|++.|++ +.+...+..+...+.+.|++++|...++++.+. .|+.... ..++..+...|+++
T Consensus 113 ~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHH
Confidence 99999999999987 457788999999999999999999999999875 4653211 23344455569999
Q ss_pred HHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHH-HHHHHHHHHh
Q 048142 159 KAEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK-VKRIRELMAE 235 (352)
Q Consensus 159 ~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 235 (352)
+|..+|+++ ....+...|+.+..++...|++++|+..+++..+..|.++.++..++..+...|+.++ +.++++++.+
T Consensus 184 eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999998 2234688999999999999999999999999999999999999999999999999976 5789998876
Q ss_pred cC
Q 048142 236 RN 237 (352)
Q Consensus 236 ~g 237 (352)
..
T Consensus 264 ~~ 265 (291)
T 3mkr_A 264 AH 265 (291)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.64 E-value=5.2e-15 Score=138.99 Aligned_cols=254 Identities=9% Similarity=-0.023 Sum_probs=176.9
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|++.|+++.... +.+..+|..+..++.+.|++++|.+.++++.+.+. .+...|..+..+|.
T Consensus 36 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP----------DHSKALLRRASANE 104 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------chHHHHHHHHHHHH
Confidence 45788999999999988753 34678888899999999999999999999888653 45667888888888
Q ss_pred hcCChHHHHHHHHHHHHc--------------------------------------------------------------
Q 048142 82 MCGQGNKALEYFYEMQIR-------------------------------------------------------------- 99 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~-------------------------------------------------------------- 99 (352)
..|++++|++.|+.+...
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 888888888777433100
Q ss_pred ---------------------------------------------CCCCC--------HhHHHHHHHHHhccCCHHHHHH
Q 048142 100 ---------------------------------------------GVKPD--------AITFVGVLVACSHAGLVDERIS 126 (352)
Q Consensus 100 ---------------------------------------------g~~p~--------~~t~~~ll~~~~~~g~~~~a~~ 126 (352)
...|+ ..++..+...+...|++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 01122 1134444455666777777777
Q ss_pred HHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 127 HFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 127 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
.+++..+. .|+...+..+...|...|++++|...|+++ ...| +..+|..+...+...|++++|...+++..+..|
T Consensus 265 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 77777654 455667777777777778888888877776 2223 466777777788888888888888888877777
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 205 DNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 205 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
.+...|..+...|...|++++|.+.++++.+.. |+... ....+...+...|..++|...+....+
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPE---VPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777788888888888888888888888776653 22111 112233445677777777777765443
No 27
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.4e-13 Score=113.74 Aligned_cols=201 Identities=9% Similarity=-0.071 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...|..+...+...|++++|.+.++++.+... .+...|..+...|...|++++|.+.|++..+.. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP----------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc----------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 567788899999999999999999999988653 456789999999999999999999999998862 346
Q ss_pred HhHHHHHHHHHhcc-CCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHH
Q 048142 105 AITFVGVLVACSHA-GLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLL 180 (352)
Q Consensus 105 ~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 180 (352)
..++..+...+... |++++|...++++.+. +..| +...+..+...|...|++++|...|+++ ...| +...|..+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 154 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 77889999999999 9999999999999872 4445 3678889999999999999999999987 2234 478899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 181 GACRIHDNLEAAERAAQQLLELLP-DNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..+...|++++|...+++..+..| .+...+..+...+...|+.++|..+++.+.+..
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999999999998888 888889999999999999999999999987543
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.64 E-value=1.4e-13 Score=121.83 Aligned_cols=220 Identities=14% Similarity=0.068 Sum_probs=177.1
Q ss_pred ccCCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCCccccc
Q 048142 2 VEDSACEEALLLFREVQHKGLTG----DKVTMVSL------------LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGM 65 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 65 (352)
.+.|++++|+..|++.... .| +...+..+ ...+...|++++|.+.++++.+...
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------- 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-------- 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Confidence 3568899999999988875 45 34444444 4778899999999999999988654
Q ss_pred cCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHH
Q 048142 66 ALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHY 144 (352)
Q Consensus 66 ~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~ 144 (352)
.+...|..+...|...|++++|++.|++..+. .+.+..++..+...+...|++++|...+++..+. .| +...+
T Consensus 152 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~ 225 (359)
T 3ieg_A 152 --WDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCF 225 (359)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred --CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHH
Confidence 45678899999999999999999999999875 3446778889999999999999999999998864 33 33333
Q ss_pred H------------HHHHHHHHcCCHHHHHHHHHhC-CCCCc-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 145 G------------CLVYILGRAGRIAKAEELIKNM-PMALD-H----FVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 145 ~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
. .+...+.+.|++++|...++++ ...|+ . ..|..+...+...|++++|...+++..+..|.+
T Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (359)
T 3ieg_A 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 2 2356688999999999999887 22333 2 235557788899999999999999999988989
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 207 GGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
+.+|..+...|...|++++|.+.|++..+..
T Consensus 306 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987653
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=1.3e-14 Score=127.16 Aligned_cols=227 Identities=9% Similarity=-0.020 Sum_probs=180.4
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC----CcHHHHHHH-
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL----KDVMTLTAL- 76 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----~~~~~~~~l- 76 (352)
.+.|++++|++.|+++.... +.+..++..+...+...|++++|.+.++++.+........ ...+ |+......+
T Consensus 66 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 143 (327)
T 3cv0_A 66 AENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL-GSVNLQADVDIDDLNVQS 143 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred HHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH-HHHHhHHHHHHHHHHHHH
Confidence 46799999999999998863 3467889999999999999999999999999864321110 0000 111111111
Q ss_pred HH-HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 77 IV-VLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 77 i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
.. .+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...|.+.|
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcC
Confidence 22 3778899999999999998863 346788999999999999999999999999874 2336788999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CcchHHHHHHHHhhcC
Q 048142 156 RIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPD------------NGGSYVILSNRYSSSR 221 (352)
Q Consensus 156 ~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~li~~~~~~g 221 (352)
++++|...|+++ ...| +..+|..+...+...|++++|.+.+++..+..|. +..+|..+..+|...|
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 999999999987 3333 5788999999999999999999999999887666 6788999999999999
Q ss_pred ChHHHHHHHHHH
Q 048142 222 KWKKVKRIRELM 233 (352)
Q Consensus 222 ~~~~a~~~~~~m 233 (352)
++++|.+++++.
T Consensus 301 ~~~~A~~~~~~~ 312 (327)
T 3cv0_A 301 RPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHTTCC
T ss_pred CHHHHHHHHHHH
Confidence 999999988743
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.3e-13 Score=116.37 Aligned_cols=197 Identities=10% Similarity=-0.004 Sum_probs=168.2
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
...|++++|++.|+++.... +.+..++..+...+...|++++|.+.++++.+... .+...|..+...|.
T Consensus 48 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS----------RNARVLNNYGGFLY 116 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----------CcHHHHHHHHHHHH
Confidence 45799999999999998763 34678899999999999999999999999988753 45678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
..|++++|.+.|+++...+..| +...+..+...+...|++++|...+++..+. . +.+...+..+...|.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998744455 4567888999999999999999999999875 2 33678899999999999999999
Q ss_pred HHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHH
Q 048142 161 EELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYV 211 (352)
Q Consensus 161 ~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (352)
...++++ ... .+...+..+...+...|+.++|.+.++++.+..|.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999987 333 35778888889999999999999999999998887765443
No 31
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.62 E-value=9.8e-14 Score=130.27 Aligned_cols=222 Identities=14% Similarity=0.011 Sum_probs=187.0
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
...|++++|++.|++.... .|+..+|..+...+...|++++|...+.++.+... .+..+|..+...|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP----------EYPPTYYHRGQMYF 321 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC----------CCHHHHHHHHHHHH
Confidence 3568999999999999885 56688889999999999999999999999988654 45678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
..|++++|++.|++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999998853 334678889999999999999999999999875 2335778889999999999999999
Q ss_pred HHHHhC----C----CCCcHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 162 ELIKNM----P----MALDHFVLGGLLGACRIH----------DNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 162 ~~~~~m----~----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
..|+++ + .......+..+...+... |++++|...+++..+..|.+..++..+...|...|++
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 999886 1 111223344455667777 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 048142 224 KKVKRIRELMAERNI 238 (352)
Q Consensus 224 ~~a~~~~~~m~~~g~ 238 (352)
++|.+.|++..+..-
T Consensus 479 ~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 479 DEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999887543
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=6.4e-14 Score=117.41 Aligned_cols=202 Identities=11% Similarity=0.034 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
..+..+|..+...+...|++++|...++++.+... .+...|..+...|...|++++|++.|++..+.. +
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 88 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK----------EDAIPYINFANLLSSVNELERALAFYDKALELD-S 88 (243)
T ss_dssp ----------------------CCTTHHHHHTTCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 34566778888888889999999999998887543 456788888889999999999999999888752 3
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHH
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLL 180 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li 180 (352)
.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...++++ ... .+...|..+.
T Consensus 89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 36777888888888999999999999988864 2336777888888899999999999998886 222 3577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..+...|++++|...+++..+..|.+..++..+...|...|++++|.+.+++..+..
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 889999999999999999888888888889999999999999999999999887643
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=4.7e-14 Score=118.24 Aligned_cols=202 Identities=11% Similarity=-0.012 Sum_probs=163.8
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
|.+.|++++|+..|++..... +.+...+..+...+...|++++|...++++.+... .+...|..+...|
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~la~~~ 101 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS----------SAATAYYGAGNVY 101 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------cchHHHHHHHHHH
Confidence 356789999999999998753 44688888999999999999999999999988753 4667899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 446778888999999999999999999999874 234678888999999999999999
Q ss_pred HHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 048142 161 EELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNR 216 (352)
Q Consensus 161 ~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 216 (352)
...|+++ ... .+..+|..+...+...|++++|...+++..+..|.+...+..+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 9999987 222 3577899999999999999999999999999988887777655443
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=6.4e-14 Score=119.69 Aligned_cols=220 Identities=10% Similarity=-0.010 Sum_probs=179.3
Q ss_pred cCCChhHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGL--TG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
..|++++|++.|+++..... .| +..+|..+...+...|++++|...++++.+... .+...|..+...
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----------~~~~~~~~la~~ 86 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP----------DMPEVFNYLGIY 86 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------CCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC----------CcHHHHHHHHHH
Confidence 56889999999999998632 12 467888999999999999999999999998754 467789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 159 (352)
|...|++++|++.|++..+.. +.+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHH
Confidence 999999999999999999852 335778999999999999999999999999864 5655555555666677899999
Q ss_pred HHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 160 AEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLP----DNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 160 A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
|...+++. ...++...|. ++..+...++.++|...+++..+..+ .+..+|..+...|...|++++|.+.|++.
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999766 2223344443 67778888889999999988765332 23678899999999999999999999999
Q ss_pred HhcC
Q 048142 234 AERN 237 (352)
Q Consensus 234 ~~~g 237 (352)
.+..
T Consensus 242 l~~~ 245 (275)
T 1xnf_A 242 VANN 245 (275)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 8754
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=4.7e-13 Score=110.50 Aligned_cols=197 Identities=11% Similarity=-0.013 Sum_probs=166.5
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|++.|++..... +.+...|..+...+...|++++|.+.++++.+... .+...|..+...|.
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 19 MRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP----------DSAEINNNYGWFLC 87 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----------CChHHHHHHHHHHH
Confidence 46799999999999998753 34678899999999999999999999999988653 46678999999999
Q ss_pred hc-CChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 048142 82 MC-GQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 82 ~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 159 (352)
.. |++++|++.|+++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence 99 999999999999988434444 567888999999999999999999999874 23357889999999999999999
Q ss_pred HHHHHHhC-CCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHH
Q 048142 160 AEELIKNM-PMA--LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYV 211 (352)
Q Consensus 160 A~~~~~~m-~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (352)
|...++++ ... .+...+..+...+...|+.+.|..+++.+.+..|.+.....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999987 222 35777888888889999999999999999888887765544
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=2e-15 Score=135.43 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=61.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
+.|++++|++.|.+ .+|..+|..++.++...|++++|...+....+. . +++.+.+.|+.+|.+
T Consensus 44 ~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~----------~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 44 QKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A----------RESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-C----------ccchhHHHHHHHHHH
Confidence 44555555555532 235555555555555556666655544444432 1 334455566666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..|+.++.+.|++++|.+
T Consensus 107 lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 107 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp --CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHH
T ss_pred hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHH
Confidence 666666555553 245556666666666666666666666554 245666666666666666666
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 163 LIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 163 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
.+.+++ ++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++..
T Consensus 170 a~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 170 GARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHT---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcC---CchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666662 55666666666666666666644433211 12222334556666666666666665544
No 37
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.56 E-value=2.7e-16 Score=140.96 Aligned_cols=218 Identities=10% Similarity=0.088 Sum_probs=87.7
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
+.|++++|.++++++. ++.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika---------------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC---------------CCHHHHHHHHHHHHh
Confidence 4578899999998883 3459999999999999999999999542 555689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
.|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|..
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp -------------------------------------CHHHHTTTTT--------CC----------------CTTTHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999977766553 5567889999999999999999887663 3677799999999999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 048142 163 LIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPP 242 (352)
Q Consensus 163 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 242 (352)
+|..++ .|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ .+.|+.
T Consensus 144 ~Y~~a~------n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad~ 209 (449)
T 1b89_A 144 LYNNVS------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI---VVHADE 209 (449)
T ss_dssp HHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHHH
T ss_pred HHHHhh------hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHhh
Confidence 999883 7999999999999999999999998 37789999999999999999995544431 122321
Q ss_pred ceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 243 GCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
...++..+.+.|+.+++..+++.
T Consensus 210 ------l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 210 ------LEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp ------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHCCCHHHHHHHHHH
Confidence 12356668899999999888864
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=3e-13 Score=112.01 Aligned_cols=183 Identities=16% Similarity=0.062 Sum_probs=147.4
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+..|++..... +.+...|..+...+.+.|++++|...+++..+... .+...|..+...|.
T Consensus 16 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P----------~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP----------RYLGGYMVLSEAYV 84 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHH
Confidence 46799999999999998753 33678899999999999999999999999998764 46678999999999
Q ss_pred hc-----------CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 82 MC-----------GQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 82 ~~-----------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
+. |++++|+..|++..+. .| +...+..+-.++...|++++|...|++..+. . .+...+..+..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~ 159 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAE 159 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHH
Confidence 99 9999999999999885 44 4678889999999999999999999999986 5 78889999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048142 150 ILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (352)
+|...|++++|...|++. ...| +...+..+...+...|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999987 3344 47888899999999999999999988753
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=4.3e-12 Score=108.61 Aligned_cols=212 Identities=12% Similarity=-0.034 Sum_probs=158.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTH----LGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
+.|++++|++.|++.... .+..++..+...+.. .+++++|...|++..+.+ +...+..+..
T Consensus 18 ~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~ 82 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------YSNGCHLLGN 82 (273)
T ss_dssp HTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------CHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------CHHHHHHHHH
Confidence 467888888888888773 245677777777777 888888888888887764 2246777778
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 79 VLAM----CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH----AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 79 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
.|.. .+++++|++.|++..+.+ +..++..+-..|.. .+++++|...|++..+. + +...+..+...
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSL 155 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHH
Confidence 8888 888888888888887764 66677777777777 88888888888887764 4 55667777777
Q ss_pred HHH----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh---
Q 048142 151 LGR----AGRIAKAEELIKNMPMALDHFVLGGLLGACRI----HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS--- 219 (352)
Q Consensus 151 ~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~--- 219 (352)
|.. .+++++|...|++.-...+...+..+...+.. .+++++|...+++..+..+ ...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 777 78888888888776212356677777777777 8888888888888776544 4567777777877
Q ss_pred -cCChHHHHHHHHHHHhcCC
Q 048142 220 -SRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 220 -~g~~~~a~~~~~~m~~~g~ 238 (352)
.+++++|.+.|++..+.|.
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 8888888888888776653
No 40
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=2.8e-13 Score=125.68 Aligned_cols=210 Identities=10% Similarity=-0.070 Sum_probs=183.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC
Q 048142 7 CEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGAL-EVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ 85 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~ 85 (352)
+++|+..+++.... .+.+...+..+...+...|++ ++|.+.|++..+... .+...|..+...|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p----------~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP----------ELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC----------CCHHHHHHHHHHHHHcCC
Confidence 56677777766553 234788889999999999999 999999999998753 456789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc---------CCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHc-
Q 048142 86 GNKALEYFYEMQIRGVKPDAITFVGVLVACSHA---------GLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRA- 154 (352)
Q Consensus 86 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~- 154 (352)
+++|++.|++..+. .|+..++..+...+... |++++|...|++..+. .| +...|..+..+|...
T Consensus 153 ~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 153 VTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHH
Confidence 99999999999874 58888899999999999 9999999999999874 44 678899999999998
Q ss_pred -------CCHHHHHHHHHhC-CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 155 -------GRIAKAEELIKNM-PMAL----DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 155 -------g~~~~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
|++++|...|++. ...| +...|..+...+...|++++|...|++..+..|.+...+..+...+...|+
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999987 4455 688999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 048142 223 WKKVKRIREL 232 (352)
Q Consensus 223 ~~~a~~~~~~ 232 (352)
+++|.+.+.+
T Consensus 308 ~~eAi~~~~~ 317 (474)
T 4abn_A 308 LTSLLESKGK 317 (474)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHhcc
Confidence 9999976543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=6.1e-13 Score=113.55 Aligned_cols=210 Identities=9% Similarity=-0.154 Sum_probs=167.6
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+..|++..... +.+..+|..+...+...|++++|...++++.+... .+...|..+...|.
T Consensus 54 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP----------TYNYAHLNRGIALY 122 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCTHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc----------cccHHHHHHHHHHH
Confidence 45799999999999998863 33688999999999999999999999999998653 35578999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+.+.... .+++...+ .++..+...++.++|.
T Consensus 123 ~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHH
Confidence 999999999999999884 455555555556667789999999999888764 33444444 4777788888899999
Q ss_pred HHHHhC-CCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 162 ELIKNM-PMALD-----HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 162 ~~~~~m-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
..+++. ...|+ ..+|..+...+...|++++|...+++..+..|.+...+ ..++...|++++|.+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 999886 33332 57888899999999999999999999998877665444 55677888888887766
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=6.8e-13 Score=119.26 Aligned_cols=214 Identities=12% Similarity=0.081 Sum_probs=131.7
Q ss_pred cCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGA-LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
+.|++++|++.|++.... .| +...|+.+...+...|+ +++|+..++++++... .+...|+.+..+|
T Consensus 109 ~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P----------~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP----------KNYQVWHHRRVLV 176 (382)
T ss_dssp HTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHH
Confidence 346667777777766653 33 45566666666666665 7777777777666543 3555666666777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHH-cCCHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGR-AGRIA 158 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~-~g~~~ 158 (352)
.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+. .| +...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 77777777777777766642 224556666666666677777777777766653 33 45666666666666 45545
Q ss_pred HH-----HHHHHhC-CCCC-cHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcC--------
Q 048142 159 KA-----EELIKNM-PMAL-DHFVLGGLLGACRIHD--NLEAAERAAQQLLELLPDNGGSYVILSNRYSSSR-------- 221 (352)
Q Consensus 159 ~A-----~~~~~~m-~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------- 221 (352)
+| +..|++. ...| +...|+.+...+...| +.++|.+.++++ +..|.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 55 3455444 2333 3556666666666665 466666666666 555666666666666666653
Q ss_pred -ChHHHHHHHHHH
Q 048142 222 -KWKKVKRIRELM 233 (352)
Q Consensus 222 -~~~~a~~~~~~m 233 (352)
.+++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 246666666665
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2e-12 Score=110.32 Aligned_cols=224 Identities=11% Similarity=-0.000 Sum_probs=166.1
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+..|++..... +.+...+..+...+...|++++|...+++..+.+..++ .....|..+...|.
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK-------AKSADFEYYGKILM 85 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT-------CCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh-------HHHHHHHHHHHHHH
Confidence 46788999999999888753 22455788888888899999999999998887432211 22456888888899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 160 (352)
..|++++|++.|++..+.. +.+..++..+...+...|++++|...+++..+ ..| +...+..+...+...+++++|
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888752 33556788888888999999999998888874 344 566676766234445589999
Q ss_pred HHHHHhC-CCCCc-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC---CCC-----cchHHHHHHHHhhcCChHHHH
Q 048142 161 EELIKNM-PMALD-HFVLGGLLGACRIHDN---LEAAERAAQQLLELL---PDN-----GGSYVILSNRYSSSRKWKKVK 227 (352)
Q Consensus 161 ~~~~~~m-~~~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~li~~~~~~g~~~~a~ 227 (352)
...|+++ ...|+ ...|..+...+...|+ .++|...+++..+.. |.. ..+|..+...|...|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9988887 33343 6677777777777777 777888888876642 221 246777888888899999999
Q ss_pred HHHHHHHhcC
Q 048142 228 RIRELMAERN 237 (352)
Q Consensus 228 ~~~~~m~~~g 237 (352)
+.+++..+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999887654
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=7.2e-13 Score=111.80 Aligned_cols=223 Identities=9% Similarity=-0.027 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG--VKP 103 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p 103 (352)
..+|..+...+...|++++|...++++.+.. . +...|..+..+|...|++++|++.|++..+.. ..|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 4678888999999999999999999999876 2 23588999999999999999999999987642 222
Q ss_pred C----HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHH
Q 048142 104 D----AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLG 177 (352)
Q Consensus 104 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 177 (352)
+ ..++..+...+...|++++|...|++..+. .|+. ..+.+.|++++|...++++ ...| +...|.
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEAR 143 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHH
Confidence 2 578889999999999999999999999875 4553 3466778999999999987 3344 467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhh
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV 257 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 257 (352)
.+...+...|++++|...+++..+..|.+..+|..+...|...|++++|.+.+++..+.. |+... ....+...+.
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~---~~~~l~~~~~ 218 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVR---AYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHH---HHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999998754 33211 1223445577
Q ss_pred hcCcccCchhhhhcCCH
Q 048142 258 KAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 258 ~~G~~~~~~~~~~~~~~ 274 (352)
..|..++|...+....+
T Consensus 219 ~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 219 AVKEYASALETLDAART 235 (258)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88999888888876543
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=6.7e-12 Score=100.64 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=145.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.+...|..|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... ...+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 356789999999999999999999999998852 235778899999999999999999999998864 23356778888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHH
Q 048142 148 VYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 225 (352)
...+...+++++|...+.+. ...| +...+..+...+...|++++|++.|++..+..|.++.+|..+...|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 2333 578888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 048142 226 VKRIRELMAER 236 (352)
Q Consensus 226 a~~~~~~m~~~ 236 (352)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=1e-11 Score=105.77 Aligned_cols=235 Identities=9% Similarity=-0.042 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-- 104 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 104 (352)
..+......+...|++++|...+++..+... .+...|..+...|...|++++|++.|++..+.+-.|+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY----------NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC----------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 3455667788999999999999999998653 2334788899999999999999999999988432222
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGA 182 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~ 182 (352)
..+|..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|...|++. ...|+ ...|..+...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 234888999999999999999999999874 2236678999999999999999999999987 44554 6677777735
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC---hHHHHHHHHHHHhcC-CCCCCc-e-eEEEEcceeehh
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK---WKKVKRIRELMAERN-IKKPPG-C-ILIEVDGVVHEF 256 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~~~-~-~~~~~~~~~~~~ 256 (352)
+...+++++|...+++..+..|.+...+..+...+...|+ +++|...+++..+.. -.|++. . .......+...+
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5556699999999999999999999999999999999998 888999998886532 112211 0 001111233345
Q ss_pred hhcCcccCchhhhhcCC
Q 048142 257 VKAGFVPNKSEVLFDMD 273 (352)
Q Consensus 257 ~~~G~~~~~~~~~~~~~ 273 (352)
...|..+.|...+....
T Consensus 232 ~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 232 TINRDKVKADAAWKNIL 248 (272)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 57788888877776543
No 47
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=3e-11 Score=105.45 Aligned_cols=215 Identities=7% Similarity=-0.045 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHc-CCCCCccccccCCcHHH
Q 048142 8 EEALLLFREVQHKGLTGDKVTMVSLLLACT-------HLGAL-------EVGMWLHPYIMKK-NIEVDVGLGMALKDVMT 72 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~ 72 (352)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..+|++..+. .. .+...
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p----------~~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK----------KNMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT----------TCHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc----------ccHHH
Confidence 78899999998752 336778888877765 35886 8999999999883 32 45568
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-h-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA-I-TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
|..++..+.+.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|......
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 99999999999999999999999997 45653 3 7999999999999999999999999863 12344555444333
Q ss_pred HH-HcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC--CcchHHHHHHHHhhcCCh
Q 048142 151 LG-RAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLEL--LPD--NGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 151 ~~-~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~ 223 (352)
.. ..|++++|..+|++. ...| +...|..++..+...|+.++|..+|++..+. .+| ....|..++..+.+.|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 22 369999999999987 2223 5788999999999999999999999999885 243 456888999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 048142 224 KKVKRIRELMAERN 237 (352)
Q Consensus 224 ~~a~~~~~~m~~~g 237 (352)
++|..+++++.+..
T Consensus 258 ~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 258 ASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988654
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=4.3e-12 Score=110.07 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC----CCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNI----EVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR- 99 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 99 (352)
+..++..+...+...|++++|..+++++.+... ..+. .....|..+...|...|++++|+..|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP------DVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999887310 0011 45567899999999999999999999998764
Q ss_pred -----CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhc-----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 100 -----GVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKY-----GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 100 -----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
+-.| ...++..+...+...|++++|...+++..+.. +-.| ....+..+...|...|++++|..+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2233 35678889999999999999999999988642 2223 4567888899999999999999999876
Q ss_pred ---------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----------------------------------
Q 048142 168 ---------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL----------------------------------- 202 (352)
Q Consensus 168 ---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------------------- 202 (352)
+..|+ ..++..+...+...|++++|...+++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 11333 567888889999999999999999998752
Q ss_pred --------------CCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 203 --------------LPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 203 --------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
.|.+..++..+...|.+.|++++|.+.+++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233456788889999999999999999988764
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=2.3e-11 Score=97.51 Aligned_cols=169 Identities=14% Similarity=0.005 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...|..+-..+.+.|++++|.+.|++..+... .+...|..+...|.+.|++++|+..+.+..... +-+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP----------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chh
Confidence 677899999999999999999999999998754 466789999999999999999999999998763 335
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGA 182 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 182 (352)
...+..+...+...++++.|...+.+..+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 667778888899999999999999998864 2336788889999999999999999999987 3344 57889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
+...|++++|...|++..+..|.+
T Consensus 151 ~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999998876654
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=2.8e-11 Score=96.33 Aligned_cols=165 Identities=13% Similarity=0.023 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
...|..+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|...+++..+. .+.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 456788889999999999999999998764 2346778889999999999999999999999874 2346788889999
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHH
Q 048142 150 ILGRAGRIAKAEELIKNM-P-MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVK 227 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 227 (352)
.|...|++++|.+.++++ . ...+...|..+...+...|++++|...+++..+..|.+...+..+...|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987 2 23467888889999999999999999999999988989999999999999999999999
Q ss_pred HHHHHHHhcC
Q 048142 228 RIRELMAERN 237 (352)
Q Consensus 228 ~~~~~m~~~g 237 (352)
+.+++..+..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999987543
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=3e-11 Score=108.55 Aligned_cols=227 Identities=7% Similarity=0.003 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCC
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ-GNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~ 104 (352)
...|+.+...+.+.|++++|+..++++++... .+...|+.+...+...|+ +++|+..|++..+.. +-+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P----------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~ 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA----------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKN 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc----------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCC
Confidence 46788888889999999999999999998664 467789999999999997 999999999999853 225
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLG 181 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 181 (352)
...|..+-.++...|++++|...|+++.+. .| +...|..+..++.+.|++++|+..|+++ ...| +...|+.+..
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~l---dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 778999999999999999999999999864 55 7889999999999999999999999998 3344 5889999999
Q ss_pred HHHh-cCCHHHH-----HHHHHHHHHhCCCCcchHHHHHHHHhhcC--ChHHHHHHHHHHHhcCCCCCCceeEEEEccee
Q 048142 182 ACRI-HDNLEAA-----ERAAQQLLELLPDNGGSYVILSNRYSSSR--KWKKVKRIRELMAERNIKKPPGCILIEVDGVV 253 (352)
Q Consensus 182 ~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~ 253 (352)
.+.. .|..++| +..+++..+..|.+...|..+...+...| ++++|.+.+.++ ...|+... .+..+.
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~---al~~La 316 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL---QPSHSSPY---LIAFLV 316 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH---TTTCCCHH---HHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh---ccCCCCHH---HHHHHH
Confidence 9988 6665777 58899999999999999999999999988 689999999887 33444221 122233
Q ss_pred ehhhhcC---------cccCchhhhhcC
Q 048142 254 HEFVKAG---------FVPNKSEVLFDM 272 (352)
Q Consensus 254 ~~~~~~G---------~~~~~~~~~~~~ 272 (352)
..+.+.| ..++|..++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 3444443 246677777665
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=2.5e-11 Score=117.49 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=147.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGC 146 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~ 146 (352)
+...|+.|...|.+.|++++|++.|++..+. .|+ ..+|..+..+|.+.|++++|...|++..+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4678999999999999999999999999884 454 778999999999999999999999999864 56 5788999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChH
Q 048142 147 LVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWK 224 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 224 (352)
+..+|.+.|++++|++.|++. ...|+ ...|+.+...+...|++++|+..|++..+..|.+...|..+...|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999987 44554 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048142 225 KVKRIRELMAE 235 (352)
Q Consensus 225 ~a~~~~~~m~~ 235 (352)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=6.2e-10 Score=95.07 Aligned_cols=221 Identities=11% Similarity=-0.084 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM----CGQGNKALEYFYEMQIRG 100 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 100 (352)
+..++..+-..+...|++++|...|.+..+. .+...+..+...|.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 5678888888999999999999999999883 334678889999999 999999999999999876
Q ss_pred CCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCc
Q 048142 101 VKPDAITFVGVLVACSH----AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR----AGRIAKAEELIKNMPMALD 172 (352)
Q Consensus 101 ~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~ 172 (352)
+..++..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++++|...|++.-...+
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence 67788888889988 99999999999999875 4 77888899999999 9999999999998721225
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCce
Q 048142 173 HFVLGGLLGACRI----HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS----SRKWKKVKRIRELMAERNIKKPPGC 244 (352)
Q Consensus 173 ~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~ 244 (352)
...+..+...+.. .+++++|...+++..+.. ++..+..+...|.. .+++++|.+.+++..+.+. ++ .
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~--a 220 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GG--G 220 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HH--H
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HH--H
Confidence 6777888888887 999999999999988763 45688889999999 9999999999999987754 11 0
Q ss_pred eEEEEcceeehhhh----cCcccCchhhhhcCC
Q 048142 245 ILIEVDGVVHEFVK----AGFVPNKSEVLFDMD 273 (352)
Q Consensus 245 ~~~~~~~~~~~~~~----~G~~~~~~~~~~~~~ 273 (352)
...+-..+.+ .|..+.|..++....
T Consensus 221 ----~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 221 ----CFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp ----HHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 1112223344 677778887776543
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.2e-11 Score=108.07 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=173.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCccccccCCcHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD-----KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE-VDVGLGMALKDVMTLTA 75 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~~ 75 (352)
.+.|++++|+..|++..... |+ ...+..+...+...|++++|.+.+++..+.... .+.. .....|..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 88 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL-----GEAKASGN 88 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH-----HHHHHHHH
Confidence 46799999999999998863 43 367788899999999999999999987653110 0000 33567889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCC--------------------HHHHHHHHHH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGV-KPD----AITFVGVLVACSHAGL--------------------VDERISHFNL 130 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~~~~ 130 (352)
+...|...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999998765311 112 3477888888999999 9999999887
Q ss_pred hhHhc---CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 131 MSEKY---GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-------PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 131 m~~~~---g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
..... +..| ....+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65421 2122 2457888888999999999999999886 1111 134788888899999999999999999
Q ss_pred HHHhCCCC------cchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 199 LLELLPDN------GGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 199 ~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..+..+.. ..++..+...|...|++++|.+.+++..+
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 87643222 55778889999999999999999998764
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1e-11 Score=112.51 Aligned_cols=264 Identities=12% Similarity=0.015 Sum_probs=194.9
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCCccccccCCcHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD-K----VTMVSLLLACTHLGALEVGMWLHPYIMKKN--IEVDVGLGMALKDVMTLT 74 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~ 74 (352)
.+.|++++|+..|++.... .|+ . ..|..+...+...|++++|...+++..+.. ...+. .....|.
T Consensus 59 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~ 130 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL------GEAKSSG 130 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch------HHHHHHH
Confidence 4579999999999999886 343 3 478888999999999999999999887641 11111 4556789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhccCC-----------------HHHHHHHHHHhh
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIR----GVKP-DAITFVGVLVACSHAGL-----------------VDERISHFNLMS 132 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~~~~~~m~ 132 (352)
.+...|...|++++|++.|++..+. +-.| ...++..+...+...|+ +++|...+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999987653 2122 24578888889999999 999999988865
Q ss_pred Hhc---CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048142 133 EKY---GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM----PMALD----HFVLGGLLGACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 133 ~~~---g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (352)
+.. +-.+ ....+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 421 2122 3457888889999999999999999886 11112 3478888899999999999999999987
Q ss_pred HhCCC------CcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC-CCCceeEEEEcceeehhhhcCcccCchhhhhcCC
Q 048142 201 ELLPD------NGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK-KPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMD 273 (352)
Q Consensus 201 ~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 273 (352)
+..+. ...++..+...|...|++++|.+.+++..+..-. ++..........+...+...|...+|..++....
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 64332 2467888999999999999999999987643111 1100011112234455678899999988876543
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=7.6e-11 Score=93.79 Aligned_cols=169 Identities=12% Similarity=0.003 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
...|..+...+...|++++|...++++.+... .+...|..+...+...|++++|.+.+++..+. .+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA----------FDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH
Confidence 45677788889999999999999998876432 46678999999999999999999999999876 34467
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHH
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGAC 183 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~ 183 (352)
..+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. ... .+...|..+...+
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 78889999999999999999999999874 3446788889999999999999999999987 222 3578899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 184 RIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
...|++++|...+++..+..|.+.
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999887655544
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.2e-11 Score=104.51 Aligned_cols=194 Identities=18% Similarity=0.119 Sum_probs=154.3
Q ss_pred ccCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CCCCCccccccCC
Q 048142 2 VEDSACEEALLLFREVQHK-------GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK------NIEVDVGLGMALK 68 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~l~ 68 (352)
...|++++|+.+|+++... .......++..+...+...|++++|...+++..+. +-.+ .
T Consensus 38 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~ 109 (311)
T 3nf1_A 38 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP--------A 109 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH--------H
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh--------H
Confidence 4579999999999998763 22334677888999999999999999999998864 2111 4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhc-----C
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIR------GVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKY-----G 136 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----g 136 (352)
...+|..+...|...|++++|.+.|++..+. +..|+ ..++..+...+...|++++|..++++..+.. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5677999999999999999999999998764 22333 4568888999999999999999999987631 1
Q ss_pred CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-----------------------------------------------
Q 048142 137 IRP-SIEHYGCLVYILGRAGRIAKAEELIKNMP----------------------------------------------- 168 (352)
Q Consensus 137 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------------------------------------- 168 (352)
..| ...++..+...|...|++++|...++++-
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 123 45678889999999999999999987751
Q ss_pred ---CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 048142 169 ---MALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELL 203 (352)
Q Consensus 169 ---~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (352)
..|+ ..+|..+...|...|++++|.+.+++..+..
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2233 5678889999999999999999999987653
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=3.6e-11 Score=108.29 Aligned_cols=266 Identities=14% Similarity=0.019 Sum_probs=194.9
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCCccccccCCcHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD----KVTMVSLLLACTHLGALEVGMWLHPYIMKKN--IEVDVGLGMALKDVMTLTA 75 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~ 75 (352)
.+.|++++|+..|++....+ +.+ ..+|..+...+...|++++|...+++..+.. ...+. .....|..
T Consensus 20 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~ 92 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL------GEAKASGN 92 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH------HHHHHHHH
Confidence 45799999999999998863 223 3578888899999999999999999876531 11011 23567888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCC--------------------HHHHHHHHHH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGV-KPD----AITFVGVLVACSHAGL--------------------VDERISHFNL 130 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~~~~ 130 (352)
+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +++|...+.+
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999998865310 112 4478888889999999 9999999887
Q ss_pred hhHhc---CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 131 MSEKY---GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM----PMALD----HFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 131 m~~~~---g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
..+.. +..| ...++..+...|...|++++|...+++. +..++ ..+|..+...+...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 65421 1122 2457888889999999999999999876 11122 34788888999999999999999999
Q ss_pred HHHhCCCC------cchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-CCceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 199 LLELLPDN------GGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK-PPGCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 199 ~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
..+..+.. ..++..+...|...|++++|.+.+++..+..-.. +..........+...+...|..++|...+..
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87643322 5678889999999999999999999876432111 1111111222344556789999999998876
Q ss_pred CCH
Q 048142 272 MDE 274 (352)
Q Consensus 272 ~~~ 274 (352)
..+
T Consensus 333 al~ 335 (406)
T 3sf4_A 333 HLE 335 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=2.2e-11 Score=109.63 Aligned_cols=228 Identities=11% Similarity=-0.002 Sum_probs=171.1
Q ss_pred ccCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-C-ccccccCCcHHHHH
Q 048142 2 VEDSACEEALLLFREVQHK----GLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV-D-VGLGMALKDVMTLT 74 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~-~~~~~~l~~~~~~~ 74 (352)
...|++++|++.|++.... +-.+ ...+|..+...+...|+++.|...+.+..+..... + .. ....+++
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~ 188 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI-----RLLQCHS 188 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-----HHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-----HHHHHHH
Confidence 3579999999999998763 2122 34678889999999999999999999887642111 0 00 3346789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhc---CC-CCChhHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIR----GVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKY---GI-RPSIEHYG 145 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---g~-~p~~~~~~ 145 (352)
.+...|...|++++|++.|++..+. +..+. ..++..+...|...|++++|...+++..+.. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9999999999999999999988753 11111 2478889999999999999999999887621 22 22467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIKNM-------PMALDHFVLGGLLGACRIHDN---LEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
.+...|.+.|++++|...+++. +.......+..+...+...|+ .++|..++++. ...+.....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886 211123345667778888898 77777777665 122233457788999
Q ss_pred HHhhcCChHHHHHHHHHHHh
Q 048142 216 RYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 216 ~~~~~g~~~~a~~~~~~m~~ 235 (352)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=3e-10 Score=99.12 Aligned_cols=186 Identities=8% Similarity=-0.022 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHH-HHHHHHHHHHhcCC
Q 048142 8 EEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVM-TLTALIVVLAMCGQ 85 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~-~~~~li~~~~~~g~ 85 (352)
++|..+|++.... +.| +...|..+...+.+.|++++|..+|++..+.. | .+.. .|..+...+.+.|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p--------~~~~~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--D--------IDPTLVYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--S--------SCTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--c--------cCccHHHHHHHHHHHHhcC
Confidence 8999999999873 245 56689999999999999999999999999843 2 1223 89999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-hccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048142 86 GNKALEYFYEMQIRGVKPDAITFVGVLVAC-SHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELI 164 (352)
Q Consensus 86 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 164 (352)
+++|..+|++..+.. +++...|....... ...|+.++|..+|+...+. .+-+...|..++..+.+.|++++|..+|
T Consensus 150 ~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 150 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998753 23444454433332 2379999999999999875 2236788999999999999999999999
Q ss_pred HhC-C---CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 165 KNM-P---MAL--DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 165 ~~m-~---~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
++. . ..| ....|..++......|+.+.|..+++++.+..|.+.
T Consensus 227 ~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 987 2 355 377899999999999999999999999998877654
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=4.2e-10 Score=93.35 Aligned_cols=190 Identities=16% Similarity=0.017 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP- 103 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 103 (352)
|+..+......+...|++++|...|++..+.... ++...|..+..+|...|++++|++.|++..+. .|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~ 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc
Confidence 5667777777888888888888888888876643 34455666788888888888888888888764 34
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-Ch-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc--
Q 048142 104 DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SI-------EHYGCLVYILGRAGRIAKAEELIKNM-PMALD-- 172 (352)
Q Consensus 104 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-- 172 (352)
+..++..+...+...|++++|...+++..+. .| +. ..|..+...+...|++++|...|++. ...|+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW 151 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 3556777888888888888888888887764 33 33 45667777778888888888888776 55565
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 173 -HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 173 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
...|..+...+...|+. .++++....+.+...|.... ....+.+++|...+++..+
T Consensus 152 ~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 45566666666544433 33333333333333332222 1223444555555555443
No 62
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=1.6e-11 Score=104.70 Aligned_cols=225 Identities=14% Similarity=0.063 Sum_probs=158.2
Q ss_pred cCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CCCCCccccccCCc
Q 048142 3 EDSACEEALLLFREVQHK-------GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK------NIEVDVGLGMALKD 69 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~l~~ 69 (352)
..|++++|+.+|++.... ..+....++..+...+...|++++|...+.+..+. +-.+ ..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~ 84 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP--------AV 84 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH--------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch--------HH
Confidence 457777777777776541 21224677889999999999999999999998865 2111 45
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhc-----CC
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIR------GVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKY-----GI 137 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----g~ 137 (352)
..+|+.+...|...|++++|++.|++.... ...| ...++..+...+...|++++|...+++..+.. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 568999999999999999999999998764 1123 35678889999999999999999999987631 11
Q ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCCc-HHHHHHHHHHHHhcCCHHHHH------HHHHHH
Q 048142 138 RP-SIEHYGCLVYILGRAGRIAKAEELIKNM----------PMALD-HFVLGGLLGACRIHDNLEAAE------RAAQQL 199 (352)
Q Consensus 138 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~p~-~~~~~~li~~~~~~g~~~~a~------~~~~~~ 199 (352)
.| ...++..+...|.+.|++++|..++++. ...+. ...|..+.......+....+. ..++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 23 4567888999999999999999999876 11222 233333333333333222222 222211
Q ss_pred HHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 200 LELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 200 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
....|....++..+...|...|++++|.+++++..+
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112233456788999999999999999999998764
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.7e-11 Score=113.74 Aligned_cols=218 Identities=9% Similarity=-0.124 Sum_probs=176.0
Q ss_pred hHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 048142 42 LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQG-NKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL 120 (352)
Q Consensus 42 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 120 (352)
++++...+++...... .+...|..+...|...|++ ++|++.|++..+.. +-+..+|..+..+|...|+
T Consensus 84 ~~~al~~l~~~~~~~~----------~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ----------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHTTCC----------CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCc----------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 4555556665444322 4677899999999999999 99999999998852 2347789999999999999
Q ss_pred HHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhc---
Q 048142 121 VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA---------GRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIH--- 186 (352)
Q Consensus 121 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~--- 186 (352)
+++|...|++..+ +.|+...+..+...|... |++++|...|++. ...| +...|..+...+...
T Consensus 153 ~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999985 468888899999999999 9999999999987 3344 488899999999988
Q ss_pred -----CCHHHHHHHHHHHHHhCC---CCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhh
Q 048142 187 -----DNLEAAERAAQQLLELLP---DNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVK 258 (352)
Q Consensus 187 -----g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~ 258 (352)
|++++|+..|++..+..| .+...|..+...|...|++++|.+.|++..+.. |+... ....+...+..
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~---a~~~l~~~~~~ 304 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPE---PQQREQQLLEF 304 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH---HHHHHHHHHHH
Confidence 999999999999999888 899999999999999999999999999987654 33211 11223344567
Q ss_pred cCcccCchhhhhcCCHHHHh
Q 048142 259 AGFVPNKSEVLFDMDEEEKE 278 (352)
Q Consensus 259 ~G~~~~~~~~~~~~~~~~~~ 278 (352)
.|..++|...+..+......
T Consensus 305 lg~~~eAi~~~~~~~~~~l~ 324 (474)
T 4abn_A 305 LSRLTSLLESKGKTKPKKLQ 324 (474)
T ss_dssp HHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHhccccCccHH
Confidence 78888888887777654433
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=1.6e-11 Score=111.15 Aligned_cols=229 Identities=12% Similarity=-0.028 Sum_probs=174.0
Q ss_pred ccCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCccccccCCcHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHK----GLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE-VDVGLGMALKDVMTLTA 75 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~~ 75 (352)
...|++++|++.|++.... +..| ...++..+...+...|++++|...+.+..+.... .+.. ....+|..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 171 (411)
T 4a1s_A 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL-----SEGRALYN 171 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH-----HHHHHHHH
Confidence 3568999999999988653 2222 4567888889999999999999999987764110 0000 34567889
Q ss_pred HHHHHHhcCC-----------------hHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 76 LIVVLAMCGQ-----------------GNKALEYFYEMQIR----GVKP-DAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 76 li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
+...|...|+ +++|++.+++..+. +..| ...++..+...+...|++++|...+++..+
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999 99999999887542 2222 234778888999999999999999998876
Q ss_pred hcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 134 KYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNM-------PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 134 ~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
...-.++ ...+..+...|...|++++|...+++. +.. ....++..+...+...|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4111112 337888899999999999999999876 111 1256788888999999999999999999876
Q ss_pred hCC------CCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 202 LLP------DNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 202 ~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..+ ....++..+...|...|++++|.+.+++..+
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 422 1235788899999999999999999998764
No 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=1.2e-09 Score=102.72 Aligned_cols=214 Identities=6% Similarity=-0.076 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHcCCCCCccccccCCcHHHH
Q 048142 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTH-------LGALE-------VGMWLHPYIMKKNIEVDVGLGMALKDVMTL 73 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 73 (352)
++|+.+|++.... .+-+...|......+.+ .|+++ +|..++++..+.- .| .+...|
T Consensus 255 ~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p--------~~~~l~ 324 (530)
T 2ooe_A 255 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LK--------KNMLLY 324 (530)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CS--------SCHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-Cc--------ccHHHH
Confidence 3677888888774 23367888888887765 79987 8999999987621 21 457789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHH
Q 048142 74 TALIVVLAMCGQGNKALEYFYEMQIRGVKPDA--ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYI 150 (352)
Q Consensus 74 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 150 (352)
..++..+.+.|++++|..+|++..+ ..|+. ..|...+..+.+.|++++|..+|++..+. .| +...|......
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 9999999999999999999999998 45653 47888888888999999999999999863 33 23333322222
Q ss_pred -HHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc----hHHHHHHHHhhcCCh
Q 048142 151 -LGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGG----SYVILSNRYSSSRKW 223 (352)
Q Consensus 151 -~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~ 223 (352)
+...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++.....|.++. .|...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999986 3234 5789999999999999999999999999887655544 788888888899999
Q ss_pred HHHHHHHHHHHhc
Q 048142 224 KKVKRIRELMAER 236 (352)
Q Consensus 224 ~~a~~~~~~m~~~ 236 (352)
+.+.++++++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=2.6e-10 Score=110.47 Aligned_cols=165 Identities=15% Similarity=0.087 Sum_probs=145.3
Q ss_pred CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048142 23 TG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGV 101 (352)
Q Consensus 23 ~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 101 (352)
.| +..+|+.|-..+.+.|++++|.+.|++.++... .+...|+.|..+|.+.|++++|++.|++..+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P----------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP----------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 45 467899999999999999999999999998653 45678999999999999999999999999884
Q ss_pred CCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHH
Q 048142 102 KPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLG 177 (352)
Q Consensus 102 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 177 (352)
.|+ ..+|..+..++...|++++|.+.|++..+. .| +...|+.+..+|.+.|++++|++.|++. ...|+ ...|.
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh
Confidence 454 778999999999999999999999999864 55 5788999999999999999999999987 45565 78899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLEL 202 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~ 202 (352)
.+...+...|++++|.+.+++..+.
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999987653
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.25 E-value=5.1e-11 Score=107.33 Aligned_cols=229 Identities=14% Similarity=0.018 Sum_probs=173.6
Q ss_pred ccCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCccccccCCcHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHK----GLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE-VDVGLGMALKDVMTLTA 75 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~~ 75 (352)
...|++++|+..|++.... +..| ...++..+...+...|++++|...+.+..+.... .+.. ....++..
T Consensus 58 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 132 (406)
T 3sf4_A 58 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-----GEARALYN 132 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-----chHHHHHH
Confidence 3578999999999987542 2223 2557788888999999999999999988764211 0000 22457889
Q ss_pred HHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHH
Q 048142 76 LIVVLAMCGQ--------------------GNKALEYFYEMQIR----GVKPD-AITFVGVLVACSHAGLVDERISHFNL 130 (352)
Q Consensus 76 li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 130 (352)
+...|...|+ +++|++.+++.... +..|. ..++..+...+...|++++|...+++
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999 99999999887542 21222 34678888999999999999999998
Q ss_pred hhHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 131 MSEKYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNM-------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 131 m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
..+...-.++ ..++..+...|...|++++|...+++. +..+. ..++..+...+...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 8754221222 347888899999999999999999876 11111 56788888999999999999999999
Q ss_pred HHHhCC--CC----cchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 199 LLELLP--DN----GGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 199 ~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..+..+ .+ ..++..+...|...|++++|.+.+++..+
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 876422 11 45788899999999999999999998754
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.25 E-value=5.4e-11 Score=103.87 Aligned_cols=230 Identities=15% Similarity=0.023 Sum_probs=173.1
Q ss_pred ccCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CccccccCCcHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHK----GLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV-DVGLGMALKDVMTLTA 75 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~ 75 (352)
...|++++|++.|++.... +..| ...++..+...+...|++++|...+.+..+..... +.. ....++..
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 128 (338)
T 3ro2_A 54 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-----GEARALYN 128 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHH
Confidence 3578999999999887542 2222 25677888889999999999999999877642111 100 22457888
Q ss_pred HHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHH
Q 048142 76 LIVVLAMCGQ--------------------GNKALEYFYEMQIR----GVKPD-AITFVGVLVACSHAGLVDERISHFNL 130 (352)
Q Consensus 76 li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 130 (352)
+...|...|+ +++|.+.+++.... +..|. ..++..+...+...|++++|...+++
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999 99999999887542 22222 34677888899999999999999998
Q ss_pred hhHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 131 MSEKYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNM----PMALD----HFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 131 m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
..+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...+++
T Consensus 209 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8753111122 347888889999999999999999876 11112 56778888899999999999999999
Q ss_pred HHHhCCC------CcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 199 LLELLPD------NGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 199 ~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
..+..+. ...++..+...|...|++++|.+.+++..+.
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8664221 2347788999999999999999999988754
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=5.8e-10 Score=92.53 Aligned_cols=153 Identities=11% Similarity=-0.044 Sum_probs=129.7
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGC 146 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~ 146 (352)
.|...|..+...+...|++++|++.|++..+..-.++...+..+..++...|++++|...+++..+. .| +...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence 3557888899999999999999999999998754378888888999999999999999999999863 45 5678899
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCc-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CcchHHHHHH
Q 048142 147 LVYILGRAGRIAKAEELIKNM-PMALD-H-------FVLGGLLGACRIHDNLEAAERAAQQLLELLPD--NGGSYVILSN 215 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m-~~~p~-~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~ 215 (352)
+...|...|++++|...|++. ...|+ . ..|..+-..+...|++++|+..|++..+..|. +...|..+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999987 22333 3 55777888899999999999999999998888 7888888888
Q ss_pred HHhhcCCh
Q 048142 216 RYSSSRKW 223 (352)
Q Consensus 216 ~~~~~g~~ 223 (352)
.|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766543
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=4.7e-10 Score=100.74 Aligned_cols=228 Identities=13% Similarity=0.020 Sum_probs=168.3
Q ss_pred ccCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CC-ccccccCCcHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGL-TGD----KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE-VD-VGLGMALKDVMTLT 74 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~~~~l~~~~~~~ 74 (352)
...|++++|+..|++...... .++ ..++..+...+...|+++.|...+.+..+.... ++ .. ....+++
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~ 186 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI-----RTIQSLF 186 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-----HHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-----hHHHHHH
Confidence 357999999999999875311 122 457888899999999999999999988763211 00 00 2356789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhc---CCCCChhHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIR----GVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKY---GIRPSIEHYGC 146 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~~~~ 146 (352)
.+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+++..+.. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 9999999999999999999988653 2111 23467888999999999999999999887621 22224677888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CC--CCc-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 048142 147 LVYILGRAGRIAKAEELIKNM----PM--ALD-HFVLGGLLGACRIHDN---LEAAERAAQQLLELLPDNGGSYVILSNR 216 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~li~~ 216 (352)
+...|.+.|++++|...+++. .. .|. ...+..+-..+...++ .++|...+++.. ..+.....+..+...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 999999999999999999886 11 232 4456666667777888 777777766521 122233567789999
Q ss_pred HhhcCChHHHHHHHHHHHh
Q 048142 217 YSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 217 ~~~~g~~~~a~~~~~~m~~ 235 (352)
|...|++++|.+.|++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988753
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=8.5e-10 Score=95.44 Aligned_cols=201 Identities=10% Similarity=-0.058 Sum_probs=132.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEV-DVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR----GVK 102 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~ 102 (352)
.|......+...|++++|.+.|.+..+..... +.. ....+|+.+..+|.+.|++++|+..|++..+. |-.
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED-----EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555667788889999988888776532110 000 12467888888999999999999888887652 111
Q ss_pred CC-HhHHHHHHHHHhcc-CCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---c
Q 048142 103 PD-AITFVGVLVACSHA-GLVDERISHFNLMSEKYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL---D 172 (352)
Q Consensus 103 p~-~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~ 172 (352)
+. ..+++.+...|... |++++|...|++..+...-..+ ..+++.+...|.+.|++++|...|++. ...| .
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 11 34677888888885 9999998888887753111111 346778888888899999999888876 1122 2
Q ss_pred H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc-----hHHHHHHHHh--hcCChHHHHHHHHHH
Q 048142 173 H-----FVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGG-----SYVILSNRYS--SSRKWKKVKRIRELM 233 (352)
Q Consensus 173 ~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~--~~g~~~~a~~~~~~m 233 (352)
. ..|..+..++...|++++|...+++..+..|.... .+..++.+|. ..+++++|.+.|+.+
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 1 25667777788888999999988888775554332 2344555553 456677777777554
No 72
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.15 E-value=3.4e-08 Score=91.77 Aligned_cols=210 Identities=13% Similarity=0.017 Sum_probs=123.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTH----LGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
.+++++|+..|++....| +...+..|-..|.. .++.++|.+.|++..+.|. ...+..|...
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------------~~a~~~Lg~~ 120 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL------------PQAQQNLGVM 120 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------------HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHH
Confidence 467777777777776654 45566666666666 6777777777777766542 2345556666
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 80 LAM----CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH----AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 80 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
|.. .+++++|++.|++..+.| +...+..|...|.. .++.++|...|++..+. | +...+..|...|
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHH
Confidence 666 567777777777766654 34455555555554 56667777777666553 3 455556666666
Q ss_pred HH----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh----
Q 048142 152 GR----AGRIAKAEELIKNMPMALDHFVLGGLLGACRI----HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS---- 219 (352)
Q Consensus 152 ~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---- 219 (352)
.. .++.++|...|++.-...+...+..+...+.. .++.++|...|++..+. .++..+..+...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTS
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCC
Confidence 65 56666666666655212244455555555543 55666666666655443 223344445555544
Q ss_pred cCChHHHHHHHHHHHhcC
Q 048142 220 SRKWKKVKRIRELMAERN 237 (352)
Q Consensus 220 ~g~~~~a~~~~~~m~~~g 237 (352)
.++.++|.+.|++..+.|
T Consensus 272 ~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 555666666666555443
No 73
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.15 E-value=3.6e-08 Score=91.61 Aligned_cols=210 Identities=9% Similarity=-0.049 Sum_probs=139.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTH----LGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
.+++++|++.|++....| +...+..|-..|.. .+++++|...|++..+.|. ...+..|...
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------------~~a~~~Lg~~ 156 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR------------DSGQQSMGDA 156 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHH
Confidence 567888888888877755 55666667777766 6788888888888777553 2456666666
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 80 LAM----CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH----AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 80 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
|.. .+++++|++.|++..+.| +..++..+...|.. .++.++|..+|++..+. | +...+..+...|
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y 229 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMY 229 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHH
Confidence 766 677888888887777654 55666666666665 67777777777777653 3 455566666666
Q ss_pred HH----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc---
Q 048142 152 GR----AGRIAKAEELIKNMPMALDHFVLGGLLGACRI----HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS--- 220 (352)
Q Consensus 152 ~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 220 (352)
.. .+++++|...|++.-...+...+..+-..+.. .++.++|...|++..+. .++..+..|...|...
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Confidence 65 66777777777765222345555555555555 67777777777776543 2334556666666665
Q ss_pred --CChHHHHHHHHHHHhcC
Q 048142 221 --RKWKKVKRIRELMAERN 237 (352)
Q Consensus 221 --g~~~~a~~~~~~m~~~g 237 (352)
+++++|.+.|++..+.|
T Consensus 308 ~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHhcC
Confidence 67777777777666654
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=2.6e-09 Score=95.93 Aligned_cols=228 Identities=12% Similarity=-0.037 Sum_probs=161.2
Q ss_pred cCCChhHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHh--ccCChHHHH-----------HHHHHHHHcCCCCCccccc
Q 048142 3 EDSACEEALLLFREVQHK--GLTG--DKVTMVSLLLACT--HLGALEVGM-----------WLHPYIMKKNIEVDVGLGM 65 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~--g~~p--~~~t~~~li~~~~--~~g~~~~a~-----------~~~~~m~~~g~~~~~~~~~ 65 (352)
+.+++++|..++++.... .+.. +...|..++..-. ..+.++.+. +.++.+.......+..
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~--- 100 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL--- 100 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH---
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH---
Confidence 578999999999998663 2323 3444455544321 223344444 6666655432110000
Q ss_pred cCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC
Q 048142 66 ALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR----GVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS 140 (352)
Q Consensus 66 ~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 140 (352)
.....|......+...|++++|++.|++..+. +-.| ...++..+...+...|++++|...+.+..+...-.++
T Consensus 101 --l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 101 --LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred --HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 01112233566778899999999999998763 1122 2457888999999999999999999988764322222
Q ss_pred -----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----h
Q 048142 141 -----IEHYGCLVYILGRAGRIAKAEELIKNM----PMALD----HFVLGGLLGACRIHDNLEAAERAAQQLLE-----L 202 (352)
Q Consensus 141 -----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~ 202 (352)
..+++.+...|...|++++|...|++. +..++ ..++..+...+...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 457888889999999999999999876 11122 35788899999999999999999999876 3
Q ss_pred C-CCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 203 L-PDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 203 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
. |....++..+...|.+.|++++|.+.+++..+
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 55567789999999999999999999998764
No 75
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=3.1e-09 Score=97.92 Aligned_cols=227 Identities=12% Similarity=0.015 Sum_probs=104.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HhccCChHHHHHHHHHHHHcCCCCCccccccC------------
Q 048142 4 DSACEEALLLFREVQHKGLTGD-KVTMVSLLLA---CTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL------------ 67 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------ 67 (352)
.+++++|++.|++.... .|+ ...+..+..+ +...++.++|.+.+++..+..... ......+
T Consensus 151 ~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~-~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN-QYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp TTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC-HHHHHHHHHHHHHCC----
T ss_pred cccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc-hHHHHHHHHHHHHHHhhhh
Confidence 35677888888777663 343 3333333322 344566666666666555543210 0000000
Q ss_pred -----------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc------------
Q 048142 68 -----------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSH------------ 117 (352)
Q Consensus 68 -----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~------------ 117 (352)
.+...++.+...|.+.|++++|++.|++..+. .| +..++..+..+|..
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 23344555555555555555555555555543 22 23333333333221
Q ss_pred -------cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHH----HHHHHHH-HHH
Q 048142 118 -------AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALDHF----VLGGLLG-ACR 184 (352)
Q Consensus 118 -------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~li~-~~~ 184 (352)
.+..+.|...++...+. -+.+...+..+...|...|++++|...|++. ...|+.. .+..+.. ...
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 11233444444444432 1123445556666677777777777777664 2233321 1222221 233
Q ss_pred hcCCHHHHHHHHHHHHH------------------------hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 185 IHDNLEAAERAAQQLLE------------------------LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..|+.++|+..|++..+ ..|.++.+|..+...|...|++++|.+.|++..+.|
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55666766666655433 245566667777777777777777777777665543
No 76
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=4.2e-09 Score=78.68 Aligned_cols=127 Identities=19% Similarity=0.086 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
.|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+. . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 45666666666777777777777666542 224455555666666666666666666666543 1 22344444455555
Q ss_pred HHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 152 GRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
...|++++|...++++ ... .+..+|..+...+...|++++|...++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555443 111 1234444444444445555555554444443
No 77
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=6.5e-09 Score=95.79 Aligned_cols=229 Identities=13% Similarity=-0.020 Sum_probs=135.9
Q ss_pred ccCCChhHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCCccccccCCcH
Q 048142 2 VEDSACEEALLLFREVQHK-------GLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKN---IEVDVGLGMALKDV 70 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~-------g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~l~~~ 70 (352)
...|++++|++.|++.... ...| ...+|+.+..+|...|++++|...+++..+.. ..+... ...
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~-----~~~ 136 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI-----ESP 136 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC-----CCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch-----hhH
Confidence 3579999999999876541 1233 46789999999999999999999999876531 111000 223
Q ss_pred HHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHH---HhccC-------------------------
Q 048142 71 MTLTALIVVLAM--CGQGNKALEYFYEMQIRGVKPD-AITFVGVLVA---CSHAG------------------------- 119 (352)
Q Consensus 71 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~g------------------------- 119 (352)
.+|+.+..++.. .+++++|++.|++..+. .|+ ...+..+..+ +...+
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 455555555544 34677888888777653 333 2222222222 12223
Q ss_pred -------------CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHH
Q 048142 120 -------------LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACR 184 (352)
Q Consensus 120 -------------~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~ 184 (352)
+.++|...+++.... .+.+...+..+...|.+.|++++|...+++. ...|+ ..+|..+...|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 344455555544432 1224455566666666666666666666665 22333 444444433332
Q ss_pred h-------------------cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 185 I-------------------HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 185 ~-------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
. .+..+.|...+++..+..|.+..++..+...|...|++++|.+.|++..+....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 1 122455666666666666777777777888888888888888888887765543
No 78
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=3.5e-09 Score=79.12 Aligned_cols=129 Identities=19% Similarity=0.129 Sum_probs=112.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCcHHHHHHHHHHHH
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PM-ALDHFVLGGLLGACR 184 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~ 184 (352)
.|..+...+...|++++|..+++++.+. . +.+...+..+...+...|++++|..+++++ .. ..+...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5677888899999999999999999874 2 336778888999999999999999999987 22 235778888999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 185 IHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..|++++|.+.++++.+..|.+..++..+...+...|++++|.+.++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999888888899999999999999999999999987643
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=1.8e-08 Score=90.02 Aligned_cols=264 Identities=14% Similarity=-0.016 Sum_probs=179.9
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKV----TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
..|++++|...+++.....-..+.. +++.+...+...|++++|...+.+..+........ .....+++.+..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~ 101 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW----HYALWSLIQQSE 101 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHH
Confidence 4799999999999987753222222 45667778889999999999999887632111000 012244677888
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCC--CC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC--C--ChhHHHHH
Q 048142 79 VLAMCGQGNKALEYFYEMQIR----GVK--PD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIR--P--SIEHYGCL 147 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~--p--~~~~~~~l 147 (352)
.+...|++++|.+.+++.... +.. |. ..++..+...+...|++++|...+++.... .-. + ...++..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHHHHHHHHH
Confidence 899999999999999988653 222 32 345667888889999999999999988764 211 1 23567788
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCcHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHhCCCC----cchHHHHH
Q 048142 148 VYILGRAGRIAKAEELIKNM----PMALDHFVLG-----GLLGACRIHDNLEAAERAAQQLLELLPDN----GGSYVILS 214 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~li 214 (352)
...+...|++++|...+++. +...+...|. ..+..+...|+.++|...+++.....+.+ ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 88899999999999999876 2111112222 23344778999999999998876644332 12456788
Q ss_pred HHHhhcCChHHHHHHHHHHHhc----CCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 215 NRYSSSRKWKKVKRIRELMAER----NIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
..+...|++++|...+++.... |..++.. .....+...+...|..++|...+.....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLN---RNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999999987542 2111100 0111123445678888888888765443
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=1.2e-08 Score=86.48 Aligned_cols=174 Identities=11% Similarity=-0.015 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGV-KP 103 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 103 (352)
+...+..+...+.+.|++++|...|+++.+..... . .....+..+..+|.+.|++++|+..|++..+..- .|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-E------WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-T------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-c------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 56777788888899999999999999998865321 0 1156788899999999999999999999988521 12
Q ss_pred C-HhHHHHHHHHHhc--------cCCHHHHHHHHHHhhHhcCCCC-ChhHH-----------------HHHHHHHHHcCC
Q 048142 104 D-AITFVGVLVACSH--------AGLVDERISHFNLMSEKYGIRP-SIEHY-----------------GCLVYILGRAGR 156 (352)
Q Consensus 104 ~-~~t~~~ll~~~~~--------~g~~~~a~~~~~~m~~~~g~~p-~~~~~-----------------~~li~~~~~~g~ 156 (352)
+ ..++..+..++.. .|++++|...|++..+. .| +.... ..+...|.+.|+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2 3456677777877 99999999999999875 33 22333 445677888899
Q ss_pred HHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCcc
Q 048142 157 IAKAEELIKNM----PMAL-DHFVLGGLLGACRIH----------DNLEAAERAAQQLLELLPDNGG 208 (352)
Q Consensus 157 ~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~ 208 (352)
+++|...|+++ |..+ ....+..+..++... |++++|...++++.+..|.+..
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 99999888876 3222 245666666777655 7888899999988888777653
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=2.4e-08 Score=89.09 Aligned_cols=228 Identities=11% Similarity=0.006 Sum_probs=162.1
Q ss_pred cCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC---CCCccccccCCcHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGL-TGD----KVTMVSLLLACTHLGALEVGMWLHPYIMKKNI---EVDVGLGMALKDVMTLT 74 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~ 74 (352)
..|++++|.+.+++...... .++ ..++..+...+...|++++|...+++..+... .++.. .....+.
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~ 139 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP-----MHEFLVR 139 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST-----HHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc-----HHHHHHH
Confidence 46899999999998765210 112 23356677788999999999999998876321 10000 2345677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH-----
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVK--P--DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG----- 145 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~----- 145 (352)
.+...|...|++++|...+++.....-. | ...++..+...+...|++++|...+++......-......+.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 7889999999999999999998764221 1 234677888889999999999999998875411111111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CCc-chHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIKNM-PMAL-----DHFVLGGLLGACRIHDNLEAAERAAQQLLELLP-----DNG-GSYVIL 213 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~-~~~~~l 213 (352)
..+..+...|++++|...+++. ...| ....+..+...+...|++++|...+++..+..+ ++. ..+..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 2334577999999999999987 2112 134567778889999999999999999765311 122 356677
Q ss_pred HHHHhhcCChHHHHHHHHHHHh
Q 048142 214 SNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..++...|+.++|...+++...
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 8889999999999999998764
No 82
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.06 E-value=1.6e-08 Score=94.94 Aligned_cols=186 Identities=9% Similarity=0.001 Sum_probs=149.2
Q ss_pred CCChh-------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCc-HHHHH
Q 048142 4 DSACE-------EALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKD-VMTLT 74 (352)
Q Consensus 4 ~g~~~-------~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~-~~~~~ 74 (352)
.|+++ +|..+|++.... +.| +...|..++..+.+.|++++|..+|+++.+... .+ ...|.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~ 360 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED----------IDPTLVYI 360 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS----------SCHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc----------cCchHHHH
Confidence 58876 899999998863 345 578899999999999999999999999998532 22 25899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHH-HHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLV-ACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILG 152 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~-~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 152 (352)
.++..+.+.|++++|.++|++..+. .|+ ...|..... .+...|+.++|..+|+...+.. +-++..|..++..+.
T Consensus 361 ~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 361 QYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999875 333 233332222 2336899999999999988752 236788999999999
Q ss_pred HcCCHHHHHHHHHhC----CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 153 RAGRIAKAEELIKNM----PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
+.|+.++|..+|++. +..|+ ...|...+......|+.+.+..+++++.+..|
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999987 33443 56899999989999999999999999988765
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=2.9e-09 Score=92.12 Aligned_cols=198 Identities=10% Similarity=-0.077 Sum_probs=140.1
Q ss_pred ccCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHK----GLTGD-KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTAL 76 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~l 76 (352)
...|++++|++.|++.... |-.++ ..+|+.+...|.+.|++++|...+++..+........ ..-..+|+.+
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~----~~~a~~~~~l 123 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF----RRGANFKFEL 123 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHH
Confidence 3568899999999877552 32222 5689999999999999999999999887642110000 0114578999
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHcC----CCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-Ch-----hHH
Q 048142 77 IVVLAMC-GQGNKALEYFYEMQIRG----VKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SI-----EHY 144 (352)
Q Consensus 77 i~~~~~~-g~~~~A~~~~~~m~~~g----~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~-----~~~ 144 (352)
...|... |++++|++.|++..+.. ..+. ..++..+...+.+.|++++|...|++..+. .... .. ..|
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHH
Confidence 9999996 99999999999987631 1111 356888999999999999999999999874 2221 21 156
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCcHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC
Q 048142 145 GCLVYILGRAGRIAKAEELIKNM-PMALDHF------VLGGLLGACR--IHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~ 204 (352)
..+..+|...|++++|...|++. ...|+.. .+..++.++. ..+++++|+..|+.+....|
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 77888899999999999999997 4445422 2444555554 45668888888776655444
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.06 E-value=2.1e-08 Score=100.68 Aligned_cols=95 Identities=8% Similarity=0.075 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g 84 (352)
|++++|.++.++. -+..+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|
T Consensus 1090 ~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA---------------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---------------CChHHHHHHHHHHHHcC
Confidence 4455555554433 12445555555555566666655555332 22334555555555556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD 122 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 122 (352)
++++|++.|....+.. ++....+.+..+|++.++++
T Consensus 1149 kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 6666555555444322 22222223444444444444
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=1.2e-08 Score=87.80 Aligned_cols=178 Identities=11% Similarity=-0.030 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHH
Q 048142 45 GMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDE 123 (352)
Q Consensus 45 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 123 (352)
|...+++..+.+. ++..++..+..++...|++++|++++.+-...|-.+ +...+..++..+.+.|+.+.
T Consensus 85 a~~~l~~l~~~~~----------~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQ----------NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSC----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCC----------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 4555555554431 333444566666777777777777777665544312 44556666777777777777
Q ss_pred HHHHHHHhhHhcCCCC-----ChhHHHHHHHHH--HHcC--CHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048142 124 RISHFNLMSEKYGIRP-----SIEHYGCLVYIL--GRAG--RIAKAEELIKNM-PMALDHFVLGGLLGACRIHDNLEAAE 193 (352)
Q Consensus 124 a~~~~~~m~~~~g~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~ 193 (352)
|.+.+++|.+. .| +..+...|..++ ...| ++.+|..+|+++ ...|+..+-..++.++...|++++|+
T Consensus 155 A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 155 ASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHH
Confidence 77777777543 44 234444444442 2223 677777777776 22344333334444666777777777
Q ss_pred HHHHHHHHh----------CCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 194 RAAQQLLEL----------LPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 194 ~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
+.++.+.+. .|.++.+...+|......|+ +|.++++++++..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 777765443 35566666555555555565 6667777666543
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.03 E-value=1.6e-09 Score=97.17 Aligned_cols=230 Identities=15% Similarity=-0.001 Sum_probs=159.5
Q ss_pred cCCChhHHHHHHHHHHHC--CCC--CCHHHHHHHHHHH--hccCChHHHH---------HHHHHHHHcCCCCCccccccC
Q 048142 3 EDSACEEALLLFREVQHK--GLT--GDKVTMVSLLLAC--THLGALEVGM---------WLHPYIMKKNIEVDVGLGMAL 67 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~li~~~--~~~g~~~~a~---------~~~~~m~~~g~~~~~~~~~~l 67 (352)
+.+++++|..++++.... .+. ++...|..++..- .-.+.++.+. +.++.+.......+..
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~----- 98 (378)
T 3q15_A 24 RQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL----- 98 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH-----
T ss_pred HHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH-----
Confidence 578899999999987652 222 3344445555431 1122222223 5555554322110000
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC---
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPD----AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP--- 139 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p--- 139 (352)
.....|......+...|++++|+..|++..+.- -.+| ..++..+...+...|+++.|...+.+..+.+.-.+
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 011123344556778999999999999987531 1122 45678888999999999999999998876432222
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCC
Q 048142 140 --SIEHYGCLVYILGRAGRIAKAEELIKNM-------PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLE-----LLP 204 (352)
Q Consensus 140 --~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~ 204 (352)
...+++.+...|...|++++|.+.|++. +..+ ...++..+...+...|++++|...+++..+ ..|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2457888899999999999999998876 2111 145788888999999999999999999877 556
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 205 DNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 205 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
....++..+...|.+.|++++|.+.+++..+..
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999987643
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=3e-08 Score=83.92 Aligned_cols=168 Identities=14% Similarity=0.065 Sum_probs=133.5
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hh
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD----AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IE 142 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~ 142 (352)
.+...+-.+...+.+.|++++|+..|++..+.. |+ ...+..+..++.+.|++++|...|++..+.+.-.|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456677788888999999999999999998853 33 567888889999999999999999999876322232 45
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHhC-CCCCc-HHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 048142 143 HYGCLVYILGR--------AGRIAKAEELIKNM-PMALD-HFVL-----------------GGLLGACRIHDNLEAAERA 195 (352)
Q Consensus 143 ~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~-~~~~-----------------~~li~~~~~~g~~~~a~~~ 195 (352)
.+..+..+|.+ .|++++|...|+++ ...|+ ...+ ..+...+...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67778888888 99999999999987 22232 2222 4556788999999999999
Q ss_pred HHHHHHhCCCCc---chHHHHHHHHhhc----------CChHHHHHHHHHHHhcC
Q 048142 196 AQQLLELLPDNG---GSYVILSNRYSSS----------RKWKKVKRIRELMAERN 237 (352)
Q Consensus 196 ~~~~~~~~~~~~---~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g 237 (352)
|+++.+..|.+. ..+..+..+|... |++++|...|+++.+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 999998877644 4677788888766 89999999999988754
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=2.6e-08 Score=96.41 Aligned_cols=169 Identities=12% Similarity=-0.015 Sum_probs=138.0
Q ss_pred cCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHH
Q 048142 3 EDSACEEALLLFREVQ--------HKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLT 74 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 74 (352)
..|++++|++.|++.. .. .+.+...+..+..++.+.|++++|.+.+++..+... .+...|.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----------~~~~a~~ 471 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG----------WRWRLVW 471 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------CCHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc----------chHHHHH
Confidence 5689999999999987 32 233567888889999999999999999999988654 4667899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILG 152 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 152 (352)
.+..+|.+.|++++|++.|++..+. .| +...|..+..++.+.|++++ ...|++..+. .| +...|..+..+|.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHH
Confidence 9999999999999999999999885 34 46778889999999999999 9999998864 44 6778899999999
Q ss_pred HcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCC
Q 048142 153 RAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDN 188 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~ 188 (352)
+.|++++|.+.|++. ...|+ ...|..+..++...++
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999998 56676 6677777777766665
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=2.9e-08 Score=85.29 Aligned_cols=143 Identities=12% Similarity=0.039 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 89 ALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGI-RPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 89 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
|+..|++....+ .++..++..+..++...|++++|++++.+.... +- .-+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555443 344444445555566666666666666555322 11 124455555566666666666666666655
Q ss_pred -CCCC-----cHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 168 -PMAL-----DHFVLGGLLGAC--RIHD--NLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 168 -~~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
...| +..+...|..++ ...| +...|..+|+++.+..| +..+-..+++++.+.|++++|.+.++.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP-TWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2334 233333344331 1122 56666666666544333 21122333335566666666666665543
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=2.8e-08 Score=86.51 Aligned_cols=220 Identities=11% Similarity=0.026 Sum_probs=154.1
Q ss_pred cCCChhHHHHHHHHHHHC------CCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHH
Q 048142 3 EDSACEEALLLFREVQHK------GLTGDK----VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMT 72 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~------g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 72 (352)
..|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+........ ..-..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~ 78 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL----FHAAKA 78 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHH
Confidence 357888999999877652 113442 367777888899999999999999877642111000 012457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC---C-ChhH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQIR----GVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIR---P-SIEH 143 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~---p-~~~~ 143 (352)
|+.+...|.+.|++++|+..|++..+. |-.+ -..++..+...|.. |++++|...|++..+...-. + ...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 899999999999999999999987643 2111 13567888888888 99999999999877532111 1 1467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcch-----H
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNM-------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGS-----Y 210 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~ 210 (352)
++.+...|.+.|++++|...|++. +..+. ...+..+...+...|++++|...|++.. ..|....+ .
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l 236 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAAL 236 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHH
Confidence 888899999999999999999886 11112 2366667777888899999999999988 66543322 3
Q ss_pred HHHHHHHhhcCChHHHHHH
Q 048142 211 VILSNRYSSSRKWKKVKRI 229 (352)
Q Consensus 211 ~~li~~~~~~g~~~~a~~~ 229 (352)
..++.++ ..|+.+.+.++
T Consensus 237 ~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 237 EDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHH-HhcCHHHHHHH
Confidence 4455555 56776665553
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=3e-09 Score=90.46 Aligned_cols=230 Identities=13% Similarity=0.044 Sum_probs=149.0
Q ss_pred hccCChHHHHHHHHHHHHcC---CCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHh
Q 048142 37 THLGALEVGMWLHPYIMKKN---IEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR------GVKP-DAI 106 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~ 106 (352)
...|++++|...+++..+.- ..++.. ....+|..+...|...|++++|+..|++..+. +-.| ...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHP-----DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 46778888888887766521 111110 45678999999999999999999999998764 2233 356
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhc-----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C--------CCC
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKY-----GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-P--------MAL 171 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--------~~p 171 (352)
++..+...+...|++++|...+.+..+.. .-.| ....+..+...|...|++++|...+++. . ..|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 78899999999999999999999887641 1123 4677888999999999999999999876 1 133
Q ss_pred c-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh-cCCCC
Q 048142 172 D-HFVLGGLLGACRIHDNLEAAERAAQQLLEL---------LPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE-RNIKK 240 (352)
Q Consensus 172 ~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p 240 (352)
+ ..++..+...+...|++++|...+++..+. .+.....|..+...+...+....+..+...... ....+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 3 567888889999999999999999998653 233444555555444444443333332221111 11111
Q ss_pred CCceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 241 PPGCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
+..........+...+...|..++|..++..
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111122244445677777777776653
No 92
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.99 E-value=4.4e-08 Score=98.41 Aligned_cols=226 Identities=15% Similarity=0.214 Sum_probs=167.6
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv---------------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC---------------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc---------------CCHHHHHHHHHHHH
Confidence 35789999999998752 12333344443 678899999988855 23358999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+.|++++|++.|.+. -|...|.-++.+|.+.|++++|.+.+....+. .+++...+.++.+|++.+++++..
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHH
Confidence 999999999999663 37788999999999999999999999877653 344444556999999999999766
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 162 ELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 162 ~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
++.+ .|+...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++..+......
T Consensus 1188 ~fI~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWke 1255 (1630)
T 1xi4_A 1188 EFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 1255 (1630)
T ss_pred HHHh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH
Confidence 5542 456677778888999999999999999985 4888999999999999999988876632211000
Q ss_pred C----------------ce----eEEEEcceeehhhhcCcccCchhhhhc
Q 048142 242 P----------------GC----ILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 242 ~----------------~~----~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
. +. ..-.+..+++.|.+.|+.++++.+++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 00 000112355557789999999998854
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=3.4e-09 Score=102.64 Aligned_cols=171 Identities=15% Similarity=-0.037 Sum_probs=144.3
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 048142 37 THLGALEVGMWLHPYIM--------KKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITF 108 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 108 (352)
...|++++|.+.+++.. +.. | .+...|..+...|.+.|++++|++.|++..+.. +-+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--S--------ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLV 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--T--------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--c--------cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHH
Confidence 78899999999999998 322 2 455688899999999999999999999998852 3356788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHh
Q 048142 109 VGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRI 185 (352)
Q Consensus 109 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 185 (352)
..+..++...|++++|...|++..+. .| +...|..+..+|.+.|++++ .+.|++. ...| +...|..+...+..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 89999999999999999999999864 45 67888999999999999999 9999887 3344 47889999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 186 HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
.|++++|...|++..+..|.+...|..+..++...++
T Consensus 547 ~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999889888899999999877665
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=7.9e-08 Score=79.53 Aligned_cols=170 Identities=9% Similarity=0.011 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh-hHHHH
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK-PD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI-EHYGC 146 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~ 146 (352)
...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+++.+.+.-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345666778889999999999999999875221 21 3467788899999999999999999998762222221 24444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHhC-CCCCc-HHHH-----------------HHHHHHHHhcCCH
Q 048142 147 LVYILGR------------------AGRIAKAEELIKNM-PMALD-HFVL-----------------GGLLGACRIHDNL 189 (352)
Q Consensus 147 li~~~~~------------------~g~~~~A~~~~~~m-~~~p~-~~~~-----------------~~li~~~~~~g~~ 189 (352)
+..+|.+ .|++++|...|+++ ...|+ ...+ ..+...+...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 4455543 57899999999987 33344 2222 2344567899999
Q ss_pred HHHHHHHHHHHHhCCCCc---chHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 190 EAAERAAQQLLELLPDNG---GSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
++|...|+++.+..|.++ ..+..+..+|.+.|++++|.+.++.+...+..
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 999999999999888765 46888999999999999999999998876543
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=1.6e-09 Score=83.95 Aligned_cols=141 Identities=8% Similarity=-0.051 Sum_probs=109.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHc
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRA 154 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 154 (352)
...+...|++++|++.+++.... .|+ ...+..+...|.+.|++++|...|++..+. .| +...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 34455678889999888887653 333 455667888899999999999999998864 45 678888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 155 GRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERA-AQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
|++++|...|++. ...|+ ...|..+...+...|+.++|.+. +++..+..|.++.+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999886 44454 77888888889999988776654 578888889888888887777776664
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=4.7e-08 Score=84.24 Aligned_cols=163 Identities=7% Similarity=-0.089 Sum_probs=129.1
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.+...+..+...+.+.|++++|...|++..+. -+-+...+..+...+...|++++|...+++.... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 34456777888888999999999999998875 2235667888899999999999999999988754 5554433332
Q ss_pred H-HHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHhhcCC
Q 048142 148 V-YILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN--GGSYVILSNRYSSSRK 222 (352)
Q Consensus 148 i-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 222 (352)
. ..+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+ ...+..+...|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2 3366778888888888776 3344 47888889999999999999999999999888876 7789999999999999
Q ss_pred hHHHHHHHHHHH
Q 048142 223 WKKVKRIRELMA 234 (352)
Q Consensus 223 ~~~a~~~~~~m~ 234 (352)
.++|...+++-.
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999988887654
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=4.6e-08 Score=92.69 Aligned_cols=162 Identities=10% Similarity=-0.038 Sum_probs=123.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 048142 39 LGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHA 118 (352)
Q Consensus 39 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 118 (352)
.|++++|.+.+++..+... .+...|..+...|.+.|++++|++.|++..+.. +.+..++..+..++...
T Consensus 2 ~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP----------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 4788899999988876543 456789999999999999999999999998752 33577889999999999
Q ss_pred CCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhc---CCHHHH
Q 048142 119 GLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIH---DNLEAA 192 (352)
Q Consensus 119 g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~~~~a 192 (352)
|++++|...+++..+. .| +...+..+..+|.+.|++++|.+.|++. ...| +...+..+...+... |+.++|
T Consensus 71 g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred CCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 9999999999999874 34 6788999999999999999999999987 3334 477888899999999 999999
Q ss_pred HHHHHHHHHhCCCCcchHHHHH
Q 048142 193 ERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~li 214 (352)
.+.+++..+..|.+...|..+.
T Consensus 148 ~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 148 SAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHhcCCcccChHHHhC
Confidence 9999999998888877776554
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=3.3e-07 Score=75.09 Aligned_cols=175 Identities=12% Similarity=-0.072 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC----
Q 048142 44 VGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG---- 119 (352)
Q Consensus 44 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---- 119 (352)
+|.+.|.+..+.| +...+..|...|...+++++|++.|++..+.| +...+..|-..|.. +
T Consensus 4 eA~~~~~~aa~~g------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 4 EPGSQYQQQAEAG------------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp CTTHHHHHHHHTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSC
T ss_pred hHHHHHHHHHHCC------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCC
Confidence 4667777777765 33578888899999999999999999998876 56777778888887 6
Q ss_pred CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCc---HHHHHHHHHHHHh----cC
Q 048142 120 LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR----AGRIAKAEELIKNM-PMALD---HFVLGGLLGACRI----HD 187 (352)
Q Consensus 120 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~----~g 187 (352)
+.++|..+|++..+. | ++..+..|...|.. .+++++|...|++. ...|+ +..+..|-..|.. .+
T Consensus 68 ~~~~A~~~~~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred CHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 899999999998764 4 66778888888877 88999999999997 33342 7888888888888 88
Q ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc-C-----ChHHHHHHHHHHHhcCCC
Q 048142 188 NLEAAERAAQQLLELLPDNGGSYVILSNRYSSS-R-----KWKKVKRIRELMAERNIK 239 (352)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~~ 239 (352)
+.++|...|++..+. +.++..+..|...|... | ++++|.+.|+...+.|..
T Consensus 144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999999998876 55667888888888654 3 899999999999888753
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=4.1e-08 Score=80.26 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=44.9
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhccCChHHHHHHHHHHHHcCCCCCcccc
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD-KVTMVS----------------LLLACTHLGALEVGMWLHPYIMKKNIEVDVGLG 64 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 64 (352)
.+.|++++|+..|++.... .|+ ...|.. +..++.+.|++++|...+++..+...
T Consensus 15 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------- 85 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP------- 85 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-------
Confidence 3578999999999998874 453 334444 44444444444444444444444322
Q ss_pred ccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 65 ~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
.+...|..+...|...|++++|+..|++..+
T Consensus 86 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 86 ---NNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp ---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333444444444444444444444444444
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=1.1e-07 Score=77.74 Aligned_cols=164 Identities=11% Similarity=0.027 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHH----------------HHHHHHhcCChHHHH
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTA----------------LIVVLAMCGQGNKAL 90 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~----------------li~~~~~~g~~~~A~ 90 (352)
..+......+.+.|++++|...|++..+... .+...|.. +..+|.+.|++++|+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI----------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH----------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 3344455567889999999999999988653 23445666 889999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCC--HHHHHHHHHhC
Q 048142 91 EYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGR--IAKAEELIKNM 167 (352)
Q Consensus 91 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~--~~~A~~~~~~m 167 (352)
..|++..+.. +-+...+..+...+...|++++|...|++..+. .| +...+..+...|...|. .+.+...++..
T Consensus 75 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 75 LFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999998852 335778889999999999999999999999864 55 67788888888866554 44566677666
Q ss_pred CCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 048142 168 PMALDH--FVLGGLLGACRIHDNLEAAERAAQQLLELLPD 205 (352)
Q Consensus 168 ~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (352)
. .|+. ..+..+-.++...|++++|...|++..+..|.
T Consensus 151 ~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 151 S-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred h-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 3443 33444455667788999999999999887764
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=2.6e-07 Score=76.39 Aligned_cols=171 Identities=10% Similarity=-0.079 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...+..+...+.+.|++++|...|+++.+..... . .....+..+..+|.+.|++++|+..|++..+. .|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~ 73 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG-P------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPT 73 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-T------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-h------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcC
Confidence 34456666777888899999999999988754321 0 12356777888899999999999999998874 233
Q ss_pred Hh----HHHHHHHHHh------------------ccCCHHHHHHHHHHhhHhcCCCCC-hhHH-----------------
Q 048142 105 AI----TFVGVLVACS------------------HAGLVDERISHFNLMSEKYGIRPS-IEHY----------------- 144 (352)
Q Consensus 105 ~~----t~~~ll~~~~------------------~~g~~~~a~~~~~~m~~~~g~~p~-~~~~----------------- 144 (352)
.. ++..+..++. ..|+.++|...|+++.+. .|+ ...+
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHH
Confidence 21 3333333333 367899999999998864 343 2222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 145 GCLVYILGRAGRIAKAEELIKNM-PMALD----HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
-.+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 24456788999999999999987 22333 35688888999999999999999999887766654
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=4.1e-08 Score=93.04 Aligned_cols=151 Identities=17% Similarity=0.019 Sum_probs=117.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~ 161 (352)
.|++++|++.|++..+. -+-+...+..+...+...|++++|...+++..+ ..| +...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47899999999998764 223477889999999999999999999999985 355 5788999999999999999999
Q ss_pred HHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc---CChHHHHHHHHHHHhc
Q 048142 162 ELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS---RKWKKVKRIRELMAER 236 (352)
Q Consensus 162 ~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 236 (352)
+.+++. ...| +...|..+...+...|++++|.+.+++..+..|.+...+..+...+... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3334 4788999999999999999999999999999999999999999999999 9999999999988765
Q ss_pred C
Q 048142 237 N 237 (352)
Q Consensus 237 g 237 (352)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=5.3e-08 Score=83.89 Aligned_cols=164 Identities=11% Similarity=-0.011 Sum_probs=133.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
+.+...+..+...+.+.|++++|...+++..+... .+...+..+...|.+.|++++|...|++.... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~ 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN----------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h
Confidence 44566777888889999999999999999998764 45678999999999999999999999988764 4
Q ss_pred CCHhHHH-HHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---cHHHH
Q 048142 103 PDAITFV-GVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL---DHFVL 176 (352)
Q Consensus 103 p~~~t~~-~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 176 (352)
|+..... .....+...++.++|...+++.... .| +...+..+...|...|++++|.+.|.++ ...| +...+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 5544333 2333466777888899999888764 44 6788999999999999999999999987 2233 37789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 177 GGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
..+...+...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999887643
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=3.5e-08 Score=78.32 Aligned_cols=160 Identities=8% Similarity=-0.054 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH-
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI- 150 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~- 150 (352)
.+..+...+.+.|++++|+..|++..+. -+-+...+..+...+...|++++|...++..... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 3556777888999999999999988764 2235677888999999999999999999998754 3444333332212
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHhhcCChHHH
Q 048142 151 LGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN--GGSYVILSNRYSSSRKWKKV 226 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a 226 (352)
+...+...+|...+++. ...| +...+..+...+...|++++|...++++.+..|.. ...+..+...|...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22323334567777776 3345 47888899999999999999999999999887653 56899999999999999999
Q ss_pred HHHHHHHHh
Q 048142 227 KRIRELMAE 235 (352)
Q Consensus 227 ~~~~~~m~~ 235 (352)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 105
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=7.9e-07 Score=76.61 Aligned_cols=163 Identities=9% Similarity=-0.021 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh----HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----hh
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDAI----TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS----IE 142 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~ 142 (352)
.+...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...+++..+...-.++ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34445778899999999999999988742 233321 3345677777888999999999999873112223 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCc
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNM--------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELL------PDNG 207 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~ 207 (352)
+++.+...|...|++++|...|+++ +..+. ..+|..+...|...|++++|...+++..+.. ..-.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6899999999999999999998876 11222 3478889999999999999999999987632 1125
Q ss_pred chHHHHHHHHhhcCC-hHHHHHHHHHHH
Q 048142 208 GSYVILSNRYSSSRK-WKKVKRIRELMA 234 (352)
Q Consensus 208 ~~~~~li~~~~~~g~-~~~a~~~~~~m~ 234 (352)
.+|..+...|.+.|+ +++|.+.+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 678899999999995 699999988765
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=6.5e-07 Score=73.32 Aligned_cols=177 Identities=11% Similarity=-0.054 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC---
Q 048142 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG--- 84 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g--- 84 (352)
.+|++.|++....| +..++..|-..+...+++++|.+.|++..+.|. ...+..|...|.. +
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~------------~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD------------GDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHTTS-STTS
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHc-CCCC
Confidence 35788888888865 788888899999999999999999999988653 3567778888877 6
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCC-CChhHHHHHHHHHHH----c
Q 048142 85 -QGNKALEYFYEMQIRGVKPDAITFVGVLVACSH----AGLVDERISHFNLMSEKYGIR-PSIEHYGCLVYILGR----A 154 (352)
Q Consensus 85 -~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~----~ 154 (352)
++++|+++|++..+.| +..++..|-..|.. .+++++|..+|++..+. |.. ..+..+..|-..|.. .
T Consensus 67 ~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCC
Confidence 8999999999998865 56777788888877 88999999999998764 321 127788889999998 8
Q ss_pred CCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhCC
Q 048142 155 GRIAKAEELIKNM-PMALDHFVLGGLLGACRIH-D-----NLEAAERAAQQLLELLP 204 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 204 (352)
+++++|...|++. ...++...+..|-..|... | +.++|...|++..+...
T Consensus 143 ~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8999999999987 2224555677777777543 3 89999999999877543
No 107
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=9e-07 Score=76.25 Aligned_cols=165 Identities=8% Similarity=-0.053 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H----hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC--CCC--
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-A----ITFVGVLVACSHAGLVDERISHFNLMSEKYGI--RPS-- 140 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~--~p~-- 140 (352)
...+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++..+...- .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34566778889999999999999998877532211 1 22344566677889999999999988753111 111
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C----
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-------PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLP--D---- 205 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~---- 205 (352)
..+|+.+...|...|++++|...|++. +..+. ..+|..+...|...|++++|...+++..+..+ .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458889999999999999999999875 22222 26888999999999999999999999765321 1
Q ss_pred CcchHHHHHHHHhhcCChHHH-HHHHHHHH
Q 048142 206 NGGSYVILSNRYSSSRKWKKV-KRIRELMA 234 (352)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 234 (352)
-..+|..+...|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 146788899999999999999 77777654
No 108
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.80 E-value=1.9e-06 Score=79.08 Aligned_cols=193 Identities=9% Similarity=-0.032 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc----CChHHHHHHHHHHH
Q 048142 25 DKVTMVSLLLACTHLG---ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC----GQGNKALEYFYEMQ 97 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 97 (352)
+...+..|-..+...| +.++|.+.|.+..+.|. ++...+..|...|... +++++|+++|++..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~----------~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT----------VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 3337888888888899 89999999999999886 5556667777777655 79999999999987
Q ss_pred HcCCCCCHhHHHHHHHH-H--hccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC-----CHHHHHHHHHhCCC
Q 048142 98 IRGVKPDAITFVGVLVA-C--SHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG-----RIAKAEELIKNMPM 169 (352)
Q Consensus 98 ~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~ 169 (352)
.| +...+..|-.. + ...++.++|...|++..+. | +...+..|...|. .| ++++|...|++.-
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 43 44555555555 3 5689999999999998875 5 6777778888887 55 9999999999987
Q ss_pred CCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh----cCChHHHHHHHHHHHhcCCC
Q 048142 170 ALDHFVLGGLLGACRI----HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS----SRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 170 ~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 239 (352)
.-++..+..|-..|.. ..+.++|...|++..+.. ++.....|...|.. ..+.++|...|+...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5567777777777765 349999999999987643 44567777777764 46899999999999888763
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=7.2e-08 Score=76.48 Aligned_cols=159 Identities=13% Similarity=0.007 Sum_probs=121.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT 107 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 107 (352)
.+..+...+.+.|++++|...+++..+... .+...|..+...|.+.|++++|+..|++.... .|+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ----------SRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSY 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH----------TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHH
Confidence 345666778899999999999998876543 46678999999999999999999999988664 344433
Q ss_pred HHHHHHH-HhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc---HHHHHHHHH
Q 048142 108 FVGVLVA-CSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD---HFVLGGLLG 181 (352)
Q Consensus 108 ~~~ll~~-~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~ 181 (352)
+..+... +...+...+|...+++..+. .| +...+..+...|...|++++|...|+++ ...|+ ...+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 3222111 12222333467888888764 55 5788999999999999999999999987 44554 568899999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048142 182 ACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 182 ~~~~~g~~~~a~~~~~~~~~ 201 (352)
.+...|+.++|...|++...
T Consensus 153 ~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999998654
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=7.2e-08 Score=74.41 Aligned_cols=136 Identities=10% Similarity=0.053 Sum_probs=69.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
+.|++++|++.|+..... .| +...+..+...|.+.|++++|.+.|++.++... .+...|..+..+|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p----------~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE----------RDPKAHRFLGLLYE 76 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHH
Confidence 345555666555554432 22 233444555555666666666666666555432 34455666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHH-HHHhhHhcCCCC-ChhHHHHHHHHHHHcC
Q 048142 82 MCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISH-FNLMSEKYGIRP-SIEHYGCLVYILGRAG 155 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~~g~~p-~~~~~~~li~~~~~~g 155 (352)
+.|++++|+..|++..+. .| +..++..+...+.+.|+.++|... +++..+ +.| ++.+|......+.+.|
T Consensus 77 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTCC
T ss_pred HcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 666666666666665553 23 244555555555555555544333 344433 233 3444444444444443
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=2.2e-06 Score=74.09 Aligned_cols=216 Identities=12% Similarity=0.075 Sum_probs=167.3
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH-
Q 048142 5 SACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLG--ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL- 80 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~- 80 (352)
...++|+++++.+... .| +...|+.--..+...| +++++++.++.+..... .+..+|+.--..+
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP----------k~y~aW~~R~~iL~ 114 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE----------KNYQIWNYRQLIIG 114 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT----------TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc----------ccHHHHHHHHHHHH
Confidence 3457899999988874 55 4667888777888888 99999999999998765 3445777665555
Q ss_pred ---Hhc---CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH--HHHHHHHHhhHhcCCCCChhHHHHHHHHHH
Q 048142 81 ---AMC---GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD--ERISHFNLMSEKYGIRPSIEHYGCLVYILG 152 (352)
Q Consensus 81 ---~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 152 (352)
... +++++++++++++.+.. +-|..+|+.---.+.+.|.++ ++++.++++.+. . .-|-..|+.-...+.
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHH
Confidence 555 78999999999999863 337778887777777888888 999999999875 2 236777777777777
Q ss_pred HcCC------HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhC---CCCcchHHHHHHHHhhc
Q 048142 153 RAGR------IAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEA-AERAAQQLLELL---PDNGGSYVILSNRYSSS 220 (352)
Q Consensus 153 ~~g~------~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~li~~~~~~ 220 (352)
+.++ ++++++.++++ ...| |...|+-+-..+...|.... +..++.+..+.. +.++..+..+.+.|.+.
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred hccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 7776 88999998876 3334 68889888888888887444 555666655443 66778889999999999
Q ss_pred CChHHHHHHHHHHHh
Q 048142 221 RKWKKVKRIRELMAE 235 (352)
Q Consensus 221 g~~~~a~~~~~~m~~ 235 (352)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999875
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=5.3e-07 Score=73.39 Aligned_cols=132 Identities=13% Similarity=0.026 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
+...+..+...+...|++++|++.|++. +.|+...+..+...+...|++++|...|++..+. . +.+...+..+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~lg 78 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-ccchHHHHHHH
Confidence 3445677788889999999999999876 4678889999999999999999999999998874 2 33678888999
Q ss_pred HHHHHcCCHHHHHHHHHhC----C-------------CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 149 YILGRAGRIAKAEELIKNM----P-------------MAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m----~-------------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
.+|...|++++|...|++. + ..| ....|..+...+...|++++|...+++..+..|.+
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999876 2 112 23778888899999999999999999998877654
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=1.3e-07 Score=82.16 Aligned_cols=193 Identities=9% Similarity=-0.053 Sum_probs=141.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccccCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HhHH
Q 048142 38 HLGALEVGMWLHPYIMKKNIEVDVGLGMALKD----VMTLTALIVVLAMCGQGNKALEYFYEMQIR----GVKPD-AITF 108 (352)
Q Consensus 38 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~ 108 (352)
..|++++|.+++++..+.... . .+..-++ ...|+.....|...|++++|.+.|.+..+. |-.+. ..+|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~--~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 79 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S--FMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAF 79 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C--SSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c--ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 357788899988877763111 0 0000022 236888888999999999999999987653 21111 3578
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC----C-C-CC--cHHHH
Q 048142 109 VGVLVACSHAGLVDERISHFNLMSEKYGI--RP--SIEHYGCLVYILGRAGRIAKAEELIKNM----P-M-AL--DHFVL 176 (352)
Q Consensus 109 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~-~p--~~~~~ 176 (352)
+.+...|...|++++|...|++..+.+.- .| -..+++.+...|.. |++++|+..|++. + . .+ ...++
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 88999999999999999999887653211 11 24577888888988 9999999999876 1 1 11 14678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------cchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 177 GGLLGACRIHDNLEAAERAAQQLLELLPDN------GGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
+.+...+...|++++|+..|++..+..+.+ ..++..+...+...|++++|...|++..
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888999999999999999999987753322 2256677778888899999999999987
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=1.1e-07 Score=73.37 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=81.7
Q ss_pred CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHH
Q 048142 136 GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVI 212 (352)
Q Consensus 136 g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 212 (352)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|++..+..|.++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3455 4556777777888888888888888887 3344 47788888888888888888888888888888888888888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 213 LSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
+..+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888887654
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=4.9e-07 Score=73.61 Aligned_cols=126 Identities=11% Similarity=0.032 Sum_probs=109.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACR 184 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 184 (352)
.+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...|++. ...| +...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 45566777889999999999998763 568889999999999999999999999987 2233 5788999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCc----------------chHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 185 IHDNLEAAERAAQQLLELLPDNG----------------GSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..|++++|...+++..+..|.+. ..+..+...|...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999877766 788999999999999999999999988654
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=1.1e-07 Score=81.62 Aligned_cols=195 Identities=10% Similarity=-0.081 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...+..+...+.+.|++++|...+++..+... .+...|..+..+|.+.|++++|+..+++..+. .+.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----------LVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQS 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCC
Confidence 567788888899999999999999999988653 46678999999999999999999999998874 2335
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGAC 183 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 183 (352)
...+..+..++...|++++|...|++..+. .|+ ...+...+....+......... .......++......+ ..+
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l 146 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL 146 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH
Confidence 677888999999999999999999988764 221 1111112222222111111111 1222222333333333 222
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc-CChHHHHHHHHHHHhc
Q 048142 184 RIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS-RKWKKVKRIRELMAER 236 (352)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 236 (352)
..|+.++|.+.++...+..|.+......+-..+.+. +.+++|.++|.+..+.
T Consensus 147 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 368899999999888888777766666666666665 6788999999987653
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=2.4e-06 Score=73.55 Aligned_cols=163 Identities=7% Similarity=-0.122 Sum_probs=124.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-
Q 048142 31 SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDV----MTLTALIVVLAMCGQGNKALEYFYEMQIRGVK-PD- 104 (352)
Q Consensus 31 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~- 104 (352)
..+..+...|++++|..++++..+.... . |+. ..+..+...+...+++++|+..|++....... ++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~--~------~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY--H------PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCC--C------HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccC--C------hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 3466778999999999999998874321 1 332 23445777778888999999999999874322 23
Q ss_pred ---HhHHHHHHHHHhccCCHHHHHHHHHHhhHhc----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CC
Q 048142 105 ---AITFVGVLVACSHAGLVDERISHFNLMSEKY----GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-------PM 169 (352)
Q Consensus 105 ---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~ 169 (352)
..+++.+...|...|++++|...|++..+.. +..+ ...++..+...|.+.|++++|...+++. +.
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 2368999999999999999999999988521 1122 2347888999999999999999998876 22
Q ss_pred CCc-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048142 170 ALD-HFVLGGLLGACRIHD-NLEAAERAAQQLLE 201 (352)
Q Consensus 170 ~p~-~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 201 (352)
.+. ..+|..+...+...| +.++|.+.+++...
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 233 678888999999999 47999999998765
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=1.1e-06 Score=68.20 Aligned_cols=126 Identities=10% Similarity=-0.051 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
.|..+...+...|++++|...|++..+. .+.+..++..+...+...|++++|...+++..+. .+.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 4444555555555555555555555443 1223444555555555555555555555555442 122344555555555
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-cHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 048142 152 GRAGRIAKAEELIKNM-PMAL-DHFVL--GGLLGACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m-~~~p-~~~~~--~~li~~~~~~g~~~~a~~~~~~~~ 200 (352)
...|++++|...|++. ...| +...+ ..+...+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5555555555555554 1111 22222 222223445555666666655543
No 119
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=5.5e-07 Score=72.52 Aligned_cols=159 Identities=10% Similarity=-0.011 Sum_probs=104.4
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCCccccccCCcHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKN--IEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
...|++++|.++++..... ......++..+...+...|++++|...+++..+.. ..... .....++.+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~l~~~ 75 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT------AEHRALHQVGMV 75 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH------HHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH------HHHHHHHHHHHH
Confidence 3579999999966555432 22356788888889999999999999999887631 11111 345678888899
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCC--CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHH
Q 048142 80 LAMCGQGNKALEYFYEMQIR----GVKP--DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS----IEHYGCLVY 149 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~ 149 (352)
|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+ ..++..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999887653 2122 1344667777777888888888888776542111111 223455666
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 048142 150 ILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m 167 (352)
.|...|++++|.+.+++.
T Consensus 156 ~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHH
Confidence 666677777766666543
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=8.3e-07 Score=68.86 Aligned_cols=128 Identities=10% Similarity=-0.040 Sum_probs=107.0
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGA 182 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 182 (352)
...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345677788888999999999999998874 2336788889999999999999999999887 2233 57888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH--HhhcCChHHHHHHHHHHH
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNR--YSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~ 234 (352)
+...|++++|...+++..+..|.+...+..+..+ +...|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999888887777544444 788899999999988765
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=7.2e-07 Score=65.32 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
...|..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555554431 22334444444444445555555555444443
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=2.7e-06 Score=73.25 Aligned_cols=169 Identities=7% Similarity=-0.149 Sum_probs=124.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC-
Q 048142 29 MVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGV---KPD- 104 (352)
Q Consensus 29 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~- 104 (352)
+...+..+...|++++|.+.+.+..+........ . .....+..+...+...|++++|+..|++..+... .+.
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-Q---QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH-H---HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH-H---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3456677789999999999999888754321000 0 1123345566777888999999999999875321 122
Q ss_pred -HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC
Q 048142 105 -AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-----IEHYGCLVYILGRAGRIAKAEELIKNM-------PMAL 171 (352)
Q Consensus 105 -~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p 171 (352)
..+|+.+...|...|++++|...|++..+.....|+ ..++..+...|.+.|++++|...+++. +...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 447889999999999999999999998732111222 258889999999999999999999876 1111
Q ss_pred -cHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048142 172 -DHFVLGGLLGACRIHDNLEAA-ERAAQQLLE 201 (352)
Q Consensus 172 -~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 201 (352)
-..+|..+...+...|+.++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 267888899999999999999 777887654
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=2e-06 Score=62.86 Aligned_cols=116 Identities=15% Similarity=0.040 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
...|..+...+...|++++|.+.++++.+... .+...|..+...+.+.|++++|+..|+++.+.. +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccH
Confidence 56788889999999999999999999988653 456789999999999999999999999998763 4467
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA 154 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 154 (352)
.++..+...+...|++++|...++++.+. . +.+...+..+...+.+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHhc
Confidence 78889999999999999999999998864 2 22455565655555443
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=9e-07 Score=69.91 Aligned_cols=119 Identities=7% Similarity=-0.033 Sum_probs=72.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH-HH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV-LA 81 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~-~~ 81 (352)
..|++++|+..|++..... +.+...|..+...+...|++++|...+++..+... .+...|..+... |.
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----------ENAELYAALATVLYY 90 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----------SCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHH
Confidence 4566677777776666542 23556666677777777777777777777666442 344556666666 55
Q ss_pred hcCCh--HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 82 MCGQG--NKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 82 ~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
..|++ ++|+..|++..+.. +.+...+..+...+...|++++|...|++..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66776 77777777766642 22345566666666777777777777776664
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=1e-06 Score=65.62 Aligned_cols=104 Identities=12% Similarity=-0.046 Sum_probs=50.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHh
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRI 185 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 185 (352)
+...-..+.+.|++++|...|++..+. -+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333444444444444444444444432 1113444444555555555555555555443 2222 24455555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHH
Q 048142 186 HDNLEAAERAAQQLLELLPDNGGSYVIL 213 (352)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l 213 (352)
.|++++|.+.|++..+..|.+...+..|
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 6666666666666555555555444443
No 126
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.58 E-value=3.5e-06 Score=80.86 Aligned_cols=220 Identities=7% Similarity=-0.084 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCCh
Q 048142 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGM-WLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQG 86 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~ 86 (352)
+.+..+|++.... .+-+...|...+.-+.+.|+.++|. .+++.....-. .+...|-..+...-+.|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P----------~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP----------NSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhCCH
Confidence 3455678777764 3336778888888788889998996 99999887432 4566788888999999999
Q ss_pred HHHHHHHHHHHHcC---------CCCC------------HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 87 NKALEYFYEMQIRG---------VKPD------------AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 87 ~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
++|.++|+++.... ..|+ ...|...+....+.|.++.|..+|....+. --.+....|.
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi 473 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHH
Confidence 99999999998641 0142 235777788888889999999999999864 1112233443
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHhh
Q 048142 146 CLVYILGRA-GRIAKAEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPD---NGGSYVILSNRYSS 219 (352)
Q Consensus 146 ~li~~~~~~-g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~ 219 (352)
..+..-.+. ++.+.|..+|+.. .+.-+...|...+.-....|+.+.|..+|++.....++ ....|...+..-.+
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 333333344 4589999999987 22235667788888888899999999999999887663 44678888888899
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 048142 220 SRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 220 ~g~~~~a~~~~~~m~~~g~~ 239 (352)
.|+.+.+.++.+++.+.-..
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999876543
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=1.2e-06 Score=64.67 Aligned_cols=81 Identities=17% Similarity=-0.010 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh
Q 048142 142 EHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219 (352)
Q Consensus 142 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 219 (352)
..+..+...|...|++++|...+++. ...| +...|..+...+...|++++|...+++..+..|.+...+..+...+..
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 33444444444444444444444443 1112 244455555555555566666666665555555555555555555555
Q ss_pred cCC
Q 048142 220 SRK 222 (352)
Q Consensus 220 ~g~ 222 (352)
.|+
T Consensus 127 ~~~ 129 (131)
T 2vyi_A 127 LRE 129 (131)
T ss_dssp HTT
T ss_pred Hhc
Confidence 444
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=1.5e-06 Score=69.93 Aligned_cols=155 Identities=14% Similarity=0.017 Sum_probs=107.6
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHH
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR----GVKP-DAITFVGV 111 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~l 111 (352)
...|++++|.++++.+... .. .....++.+...|...|++++|...|++.... +..| ...++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PA---------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TT---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hH---------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4678999999965555331 11 35578889999999999999999999988752 2222 24567778
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHhC----C--CCCc--HHHHHH
Q 048142 112 LVACSHAGLVDERISHFNLMSEKYGIRP-----SIEHYGCLVYILGRAGRIAKAEELIKNM----P--MALD--HFVLGG 178 (352)
Q Consensus 112 l~~~~~~g~~~~a~~~~~~m~~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~p~--~~~~~~ 178 (352)
...+...|++++|...+++..+...-.+ ....+..+...+...|++++|...+++. . ..+. ..++..
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 8888899999999998888765321122 2345777788888889999888888765 1 1111 334566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048142 179 LLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
+...+...|++++|.+.+++..+
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH
Confidence 77778888888888888887655
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=5.9e-07 Score=66.97 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=89.2
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHH
Q 048142 137 IRPS-IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVIL 213 (352)
Q Consensus 137 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 213 (352)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..+++..+..|.+...|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4553 456778889999999999999999987 3344 588999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhc
Q 048142 214 SNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
..+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 130
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.57 E-value=7.3e-07 Score=81.92 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCcchHHHH
Q 048142 143 HYGCLVYILGRAG---RIAKAEELIKNM--PMALDHFVLGGLLGACRIH----DNLEAAERAAQQLLELLPDNGGSYVIL 213 (352)
Q Consensus 143 ~~~~li~~~~~~g---~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l 213 (352)
.+..|...|.+.| +.++|+..|++. .-.++...+..|...|... ++.++|...|++.. +.++..+..|
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 4444444444444 444455444443 1122333333333333222 34445555444443 3333444444
Q ss_pred HHH-H--hhcCChHHHHHHHHHHHhcC
Q 048142 214 SNR-Y--SSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 214 i~~-~--~~~g~~~~a~~~~~~m~~~g 237 (352)
... | ...+++++|.+.|++..+.|
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 443 2 23444455555554444433
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=4.4e-07 Score=69.80 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|++..+..|.++..|..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445555666677777777777777665 2223 4666666667777777777777777777777777777777777777
Q ss_pred hhcCChHHHHHHHHHHHh
Q 048142 218 SSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~~ 235 (352)
...|++++|.+.|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776654
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=7.8e-07 Score=78.37 Aligned_cols=94 Identities=17% Similarity=0.069 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|++..+..|.+...+..+...+.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888888889999998888876 3334 57788888889999999999999999999988988889999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 048142 219 SSRKWKKV-KRIRELMA 234 (352)
Q Consensus 219 ~~g~~~~a-~~~~~~m~ 234 (352)
..|+.++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888 44566554
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=1.3e-06 Score=74.00 Aligned_cols=202 Identities=12% Similarity=-0.053 Sum_probs=139.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCC-CHHHHHHH-------HHHHhccCChHHHHHHHHHHHHcCCCCCcccc----cc----
Q 048142 3 EDSACEEALLLFREVQHKGLTG-DKVTMVSL-------LLACTHLGALEVGMWLHPYIMKKNIEVDVGLG----MA---- 66 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~---- 66 (352)
+.++..+|.+.|.+.... .| ....|+.+ ...+.+.++..++...+..-. ++.|+.... ..
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCcccc
Confidence 468999999999999985 45 57788877 455555555444444333332 333221100 00
Q ss_pred C-----CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-
Q 048142 67 L-----KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS- 140 (352)
Q Consensus 67 l-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~- 140 (352)
+ --...+-.+...+...|++++|.++|..+... .|+....-.+...+.+.+++++|+..|+...+. . .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~ 169 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFL 169 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-Cccc
Confidence 0 01234556778889999999999999988764 355545555666888999999999999855432 1 221
Q ss_pred -hhHHHHHHHHHHHcCCHHHHHHHHHhC--CCC-Cc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHH
Q 048142 141 -IEHYGCLVYILGRAGRIAKAEELIKNM--PMA-LD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVIL 213 (352)
Q Consensus 141 -~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~-p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 213 (352)
...+..+-.++.+.|++++|+..|++. +.. |. ...+.....++...|+.++|..+|+++....|. ...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 236777888999999999999999988 222 43 346667777889999999999999999998776 5444433
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=1.4e-06 Score=64.70 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=58.1
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.+...|..+...+.+.|++++|++.|++..+. .+.+...+..+...+...|++++|...+++..+. .+.+...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 45556777777777777777777777776654 1224556666666666777777777776666553 11234445555
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 048142 148 VYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m 167 (352)
...|.+.|++++|...|++.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555443
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=4.2e-05 Score=66.02 Aligned_cols=197 Identities=11% Similarity=0.020 Sum_probs=156.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc---CChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHH
Q 048142 6 ACEEALLLFREVQHKGLTGDKVTMVSLLLAC----THL---GALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 6 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
+++++++.++.+.... +-+..+|+.--..+ ... +++++++++++.+.+... .|-.+|+.-.-
T Consensus 84 ~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p----------kny~aW~~R~~ 152 (306)
T 3dra_A 84 NLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP----------KNHHVWSYRKW 152 (306)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT----------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHH
Confidence 8999999999998853 23566777644444 445 789999999999998765 68889999988
Q ss_pred HHHhcCChH--HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC------HHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 79 VLAMCGQGN--KALEYFYEMQIRGVKPDAITFVGVLVACSHAGL------VDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 79 ~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
.+.+.|+++ ++++.++++.+.... |...|+.-...+.+.+. ++++++.++.+... -+-|...|+-+-..
T Consensus 153 vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~l 229 (306)
T 3dra_A 153 LVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGI 229 (306)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHH
Confidence 888899988 999999999987443 77788877777777776 89999999988864 23378889999889
Q ss_pred HHHcCCHHH-HHHHHHhC-CC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcchHHHHHHH
Q 048142 151 LGRAGRIAK-AEELIKNM-PM----ALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-LLPDNGGSYVILSNR 216 (352)
Q Consensus 151 ~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~ 216 (352)
+.+.|+..+ +..+..+. .. ..+...+..+...+.+.|+.++|.++++.+.+ .+|.....|+..++.
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 230 HERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999888554 55677765 21 24678899999999999999999999999987 688877777765543
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=4.7e-06 Score=61.40 Aligned_cols=118 Identities=8% Similarity=-0.053 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...+..+...+...|++++|...+++..+... .+...|..+...+...|++++|++.+++..+. .+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~ 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP----------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccC
Confidence 344556666666667777777777776665432 34456666666666777777777777666654 2223
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCC
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGR 156 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~ 156 (352)
...+..+...+...|++++|...+++..+. .| +...+..+..++.+.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhc
Confidence 555666666666677777777766666543 23 44555555555555554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=3.7e-06 Score=62.33 Aligned_cols=119 Identities=10% Similarity=-0.083 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
+.+...|..+...+...|++++|...+++..+... .+...|..+...|...|++++|+..|++..+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~ 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP----------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-P 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT----------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-T
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 34567888999999999999999999999987643 466789999999999999999999999998852 3
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcC
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAG 155 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g 155 (352)
.+...+..+..++...|++++|...|++..+. .| +...+..+..++.+.|
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhc
Confidence 35778889999999999999999999998864 34 4556666777766655
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=3.3e-06 Score=71.61 Aligned_cols=186 Identities=10% Similarity=-0.068 Sum_probs=141.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCHh----
Q 048142 38 HLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTAL-------IVVLAMCGQGNKALEYFYEMQIRGVKPDAI---- 106 (352)
Q Consensus 38 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 106 (352)
..++...|.+.|.++.+... .....|+.+ ...+.+.++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP----------~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~ 85 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE----------SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARI 85 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh----------hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhh
Confidence 68999999999999998765 355688888 5777777777777766665443 333321
Q ss_pred ------------------HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 048142 107 ------------------TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP 168 (352)
Q Consensus 107 ------------------t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 168 (352)
........+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 1234566778899999999999998753 4644366667778999999999999999874
Q ss_pred CCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CcchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 169 MALDH----FVLGGLLGACRIHDNLEAAERAAQQLLELL--PD-NGGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 169 ~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
..|+. ..+..+-.++...|++++|+..|++...+. |. ..........++.+.|+.++|..+|+++....-
T Consensus 163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44432 367777889999999999999999987643 32 334567778889999999999999999987543
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=5.1e-06 Score=64.00 Aligned_cols=92 Identities=10% Similarity=-0.059 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYI 150 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 150 (352)
.|..+...+.+.|++++|+..|++..... +-+...|..+..++...|++++|...|++..+. .| ++..|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---GKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CCCCcHHHHHHHHH
Confidence 34444444444444444444444444421 112334444444444444444444444444432 22 33444444444
Q ss_pred HHHcCCHHHHHHHHHhC
Q 048142 151 LGRAGRIAKAEELIKNM 167 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m 167 (352)
|.+.|++++|...|++.
T Consensus 114 ~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 44444444444444443
No 140
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.7e-05 Score=70.58 Aligned_cols=202 Identities=7% Similarity=-0.129 Sum_probs=143.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCcccc-ccC------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLG-MAL------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIR-GVKPD 104 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~l------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 104 (352)
...+.+.|++++|.+.|..+.+.......... ... .....+..|...|.+.|++++|.+.+.+.... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999999885433211111 000 11234788999999999999999999987652 11222
Q ss_pred Hh----HHHHHHHHHhccCCHHHHHHHHHHhhHhc---CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CC
Q 048142 105 AI----TFVGVLVACSHAGLVDERISHFNLMSEKY---GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-------PM 169 (352)
Q Consensus 105 ~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~ 169 (352)
.. ..+.+-..+...|+.++|..++....... +..+ -..++..+...|...|++++|..+++++ ..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 23334444556789999999888766421 2233 2567788999999999999999999876 22
Q ss_pred CCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCC----cchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 170 ALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL---LPDN----GGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 170 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
+|. ..+|..++..|...|++++|..++++.... .+.+ ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333 567888899999999999999999987652 2222 2456777888899999999998877664
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=2.6e-06 Score=65.34 Aligned_cols=99 Identities=14% Similarity=0.000 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...+..+...+.+.|++++|...|++..+... .+...|..+..+|...|++++|+..|++..... +.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH----------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc----------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 445566677777778888888888887776543 455677777777888888888888888777642 224
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
...+..+..++...|++++|...|+...+.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556677777777788888888877777654
No 142
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.45 E-value=1e-05 Score=77.59 Aligned_cols=203 Identities=9% Similarity=-0.023 Sum_probs=151.1
Q ss_pred CCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC------CCCccccccCC--------
Q 048142 4 DSACEEAL-LLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNI------EVDVGLGMALK-------- 68 (352)
Q Consensus 4 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~~~~~~~l~-------- 68 (352)
.|+.++|. ++|++.... .+.+...|...+...-+.|+++.|.++|+.+.+... .++. |
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~------p~~~~~~~~ 428 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD------PTNESAINQ 428 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS------TTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc------Ccchhhhhh
Confidence 46778896 999998864 344566677788888899999999999999886420 0000 2
Q ss_pred ----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChh
Q 048142 69 ----DVMTLTALIVVLAMCGQGNKALEYFYEMQIR-G-VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIE 142 (352)
Q Consensus 69 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 142 (352)
....|...+....+.|+.+.|..+|.+..+. + ..+......+.+.-. ..++.+.|..+|+...+. +.-+..
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~--~p~~~~ 505 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY--FATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH--HTTCHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCchH
Confidence 2346888888888999999999999999875 2 223333333333322 235699999999999986 333566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNM-PMAL----DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
.+...++.....|+.+.|..+|++. ...| ....|...+.--...|+.+.+..+.+++.+..|.+. ....+++-|
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 6788888888999999999999986 3233 367899999999999999999999999999888764 444444444
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=2.7e-07 Score=74.59 Aligned_cols=132 Identities=13% Similarity=-0.025 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--------------ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP--------------SIEHYGCLVYILGRAGRIAKAEELIKNM-PMA 170 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 170 (352)
..+..+...+...|++++|...|++..+...-.| ....+..+..+|.+.|++++|...+++. ...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666666777777777766664211111 0267778888889999999999998876 223
Q ss_pred C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHH-HHHHHHHhcC
Q 048142 171 L-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVK-RIRELMAERN 237 (352)
Q Consensus 171 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g 237 (352)
| +...|..+..++...|++++|...|++..+..|.+...+..+...+...++.+++. ..+..|...+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 57788888889999999999999999999988888888888888888888887776 5566665443
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=2.8e-05 Score=68.12 Aligned_cols=217 Identities=13% Similarity=0.051 Sum_probs=144.9
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLG-ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+..++|+++++.+... .| +..+|+.--..+...| .+++++++++.+..... .+..+|+.-...+.
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP----------Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL----------KSYQVWHHRLLLLD 134 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC----------CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHH
Confidence 34557788888888874 44 5566777666666777 58899999998887654 56678888777777
Q ss_pred hc-C-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH--------HHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 82 MC-G-QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD--------ERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 82 ~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
+. + ++++++++++++.+.. +-|..+|+--.-.+.+.|.++ ++++.++++.+. . .-|...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHH
Confidence 66 6 8889999998888753 236667766555555555555 788888888764 2 23677777777777
Q ss_pred HHcCC-------HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHh
Q 048142 152 GRAGR-------IAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNL--------------------EAAERAAQQLLEL 202 (352)
Q Consensus 152 ~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~ 202 (352)
.+.++ ++++++.+++. ...| |...|+-+-..+.+.|.. .........+...
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 77765 67788887765 3334 577777766666655543 1222222222221
Q ss_pred C------CCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 203 L------PDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 203 ~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
. ++++.....|.+.|...|+.++|.++++.+.+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1 34555667888888888888899998888753
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=2.8e-06 Score=60.82 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CcchHHHHHHH
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPD--NGGSYVILSNR 216 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~ 216 (352)
...+..+...+.+.|++++|...|++. ... .+...|..+...+...|++++|...+++..+..|. +...+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555566666666666666666654 112 24556666666777777777777777777776666 66677777777
Q ss_pred Hhhc-CChHHHHHHHHHHHhcC
Q 048142 217 YSSS-RKWKKVKRIRELMAERN 237 (352)
Q Consensus 217 ~~~~-g~~~~a~~~~~~m~~~g 237 (352)
|... |++++|.+.++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 7777 77777777777776544
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.40 E-value=3.2e-06 Score=66.66 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=94.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH-HHHcCCH--
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI-LGRAGRI-- 157 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~-- 157 (352)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. . +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-R-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888999988887752 346678888888899999999999999988764 1 2256677777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcch
Q 048142 158 AKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGS 209 (352)
Q Consensus 158 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 209 (352)
++|...|++. ...| +...|..+...+...|++++|...+++..+..|.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999988886 3334 46778888888899999999999999988887776543
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=4.3e-06 Score=63.46 Aligned_cols=94 Identities=11% Similarity=-0.072 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh
Q 048142 142 EHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219 (352)
Q Consensus 142 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 219 (352)
..+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...|++..+..|.++..|..+..+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33444455556666666666666654 2222 355555566666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 048142 220 SRKWKKVKRIRELMAE 235 (352)
Q Consensus 220 ~g~~~~a~~~~~~m~~ 235 (352)
.|++++|.+.|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665543
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=8.1e-06 Score=71.81 Aligned_cols=139 Identities=11% Similarity=-0.084 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccc---cC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGM---AL--KDVMTLTALIVVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~l--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
+...|..+...+.+.|++++|...|++..+........... .+ .....|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999865321000000 00 00467888888888888888888888888775
Q ss_pred CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHH-HHHHhC
Q 048142 100 GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAE-ELIKNM 167 (352)
Q Consensus 100 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~-~~~~~m 167 (352)
. +.+...|..+..++...|++++|...|++..+. .| +...+..+..++.+.|+.++|. ..|+.|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 335667778888888888888888888887753 44 5667777777777777777773 344433
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=5.2e-06 Score=61.38 Aligned_cols=91 Identities=10% Similarity=-0.058 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcC
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSR 221 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 221 (352)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..+++..+..|.+...|..+..+|...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 333444444455555555554443 1112 24444444455555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHH
Q 048142 222 KWKKVKRIRELMA 234 (352)
Q Consensus 222 ~~~~a~~~~~~m~ 234 (352)
++++|.+.|++..
T Consensus 87 ~~~~A~~~~~~al 99 (126)
T 3upv_A 87 EYASALETLDAAR 99 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555443
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=0.00027 Score=61.51 Aligned_cols=216 Identities=12% Similarity=0.008 Sum_probs=153.8
Q ss_pred CCh-hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCCccccccCCcHHH
Q 048142 5 SAC-EEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGA----------LEVGMWLHPYIMKKNIEVDVGLGMALKDVMT 72 (352)
Q Consensus 5 g~~-~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 72 (352)
|.+ ++|++++..+... .| +..+|+.--..+...+. +++++.+++.+..... .+..+
T Consensus 43 ~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P----------Kny~a 110 (331)
T 3dss_A 43 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----------KSYGT 110 (331)
T ss_dssp TCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT----------TCHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC----------CCHHH
Confidence 444 5899999999874 56 45567653333333332 6788999999988654 67788
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC-HHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 73 LTALIVVLAMCG--QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL-VDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 73 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
|+.-.-.+.+.+ ++++++++++++.+.. +-|..+|+.---.+...|. .+++++.++.+.+. . .-|...|+....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ 187 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHH
Confidence 998888888887 4899999999999864 3377788877777777888 68999999999875 2 337777877776
Q ss_pred HHHHc--------------CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHh
Q 048142 150 ILGRA--------------GRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIH-----------DNLEAAERAAQQLLEL 202 (352)
Q Consensus 150 ~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~ 202 (352)
.+.+. +.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++.+.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 66655 4578888888876 2234 577776555444444 4578999999999999
Q ss_pred CCCCcchHHHHHHH---HhhcCChHHHHHHHHHHHh
Q 048142 203 LPDNGGSYVILSNR---YSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 203 ~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~ 235 (352)
.|.+...+..++.. ....|..+++...+.++.+
T Consensus 268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 99885555444322 2245667777778887765
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=8.4e-06 Score=61.00 Aligned_cols=95 Identities=9% Similarity=-0.115 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...+++..+..|.+...+..+...|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444445555555555555555555543 1112 2445555555555555555555555555555555555555555555
Q ss_pred hhcCChHHHHHHHHHHH
Q 048142 218 SSSRKWKKVKRIRELMA 234 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~ 234 (352)
...|++++|.+.|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555555555544
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1.1e-05 Score=58.12 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+. .+.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4455555556666666666666666655431 223444555555555555555555555555442 1113444444444
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 048142 150 ILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m 167 (352)
+|...|++++|...+++.
T Consensus 81 ~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 555555555555555443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=1.1e-05 Score=60.00 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG--VKPD 104 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~ 104 (352)
.++..+-..+.+.|++++|++.|++.++... .+...|+.+..+|.+.|++++|++.|++..+.. ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p----------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP----------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 3455556666666666666666666665432 344556666666666666666666666655421 1111
Q ss_pred ----HhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 105 ----AITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 105 ----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
..+|..+-.++...|++++|...|++...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12344455555556666666666655544
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=1.8e-05 Score=61.53 Aligned_cols=99 Identities=11% Similarity=-0.057 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...|..+...+.+.|++++|...|++..+... .+...|..+..+|.+.|++++|+..|++..+.. +-+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP----------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKY 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 344556666666666777777776666666442 344566666666666677777777666666542 223
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
...|..+..++...|++++|...|++..+.
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 555666666666666666666666666553
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2.1e-05 Score=59.46 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD----AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEH 143 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~ 143 (352)
+...|..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..+. .| +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 4445555555555666666666666655542 333 334444444444555555555555444432 12 2333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Q 048142 144 YGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
+..+..+|...|++++|...|++
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444433
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=4e-05 Score=55.09 Aligned_cols=109 Identities=9% Similarity=-0.072 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...+..+...+...|++++|...+++..+... .+...|..+...|...|++++|...+++..+.. +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP----------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC----------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-ccc
Confidence 456778888889999999999999999988653 456788899999999999999999999988752 335
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCL 147 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~l 147 (352)
...+..+..++...|++++|...+++..+ ..| +...+..+
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 112 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLK---HEANNPQLKEGL 112 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---cCCCCHHHHHHH
Confidence 77788889999999999999999998875 344 34444433
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=3.6e-06 Score=72.07 Aligned_cols=179 Identities=11% Similarity=0.007 Sum_probs=120.6
Q ss_pred ccCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
.+.|++++|+..|++.... .| +...|..+..++.+.|++++|...+++..+... .+...|..+..+|
T Consensus 15 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG----------QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT----------TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHH
Confidence 4679999999999999885 44 788889999999999999999999999987543 4667899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDA-ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 159 (352)
...|++++|+..|++..+. .|+. ..+...+....+ ..++.. +...... ....+......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999998763 2221 111112222111 111222 1222222 344455554444333 2689999
Q ss_pred HHHHHHhC-CCCCcHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 048142 160 AEELIKNM-PMALDHF-VLGGLLGACRIH-DNLEAAERAAQQLLE 201 (352)
Q Consensus 160 A~~~~~~m-~~~p~~~-~~~~li~~~~~~-g~~~~a~~~~~~~~~ 201 (352)
|.+.++.. ...|+.. ....+-..+... +.+++|.++|+...+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99998876 5566643 333343344444 567888899888755
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=8.2e-06 Score=63.47 Aligned_cols=104 Identities=13% Similarity=-0.045 Sum_probs=82.3
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHH
Q 048142 104 DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLL 180 (352)
Q Consensus 104 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 180 (352)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|...|++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556777888888889999999888888764 34 6777888888888888999888888876 3334 477888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcchH
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDNGGSY 210 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (352)
..+...|++++|...|++..+..|.+...|
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 888888889999888888888777776654
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=1.3e-05 Score=59.03 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGV--KPD 104 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~ 104 (352)
..|..+...+...|++++|...+.+..+... .+...|..+...|...|++++|...|++...... .++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP----------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 4455666666667777777777776666542 3445666666667777777777777766655321 112
Q ss_pred ----HhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 105 ----AITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 105 ----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
..++..+..++...|++++|...|+...+.
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445556666666666666666666666553
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.4e-05 Score=60.48 Aligned_cols=108 Identities=13% Similarity=-0.076 Sum_probs=64.1
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHH
Q 048142 104 DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLG 177 (352)
Q Consensus 104 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 177 (352)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345556666666666677777666666653 3444 455566666666666666666666654 2222 355555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
.+...+...|++++|...+++..+..|.+...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 6666666666666666666666666555554444333
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.5e-05 Score=69.80 Aligned_cols=194 Identities=9% Similarity=-0.069 Sum_probs=140.0
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCcccc
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD----------------KVTMVSLLLACTHLGALEVGMWLHPYIMKKN-IEVDVGLG 64 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~ 64 (352)
.+.|++++|++.|....+...... ...+..+...|...|++++|.+.+.++.+.- ..++.
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~--- 91 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS--- 91 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH---
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch---
Confidence 356899999999999987432211 1247789999999999999999999877531 11111
Q ss_pred ccCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 048142 65 MALKDV-MTLTALIVVLAMCGQGNKALEYFYEMQI----RGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIR 138 (352)
Q Consensus 65 ~~l~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~ 138 (352)
+.. ...+.+-..+...|++++|.+++++... .+..+. ..++..+...+...|++++|..++++......-.
T Consensus 92 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 92 ---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp ---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 111 2334444555567899999999988754 334444 4567789999999999999999999877642221
Q ss_pred ---C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 139 ---P-SIEHYGCLVYILGRAGRIAKAEELIKNM-------PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 139 ---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
+ ...++..++..|...|++++|..++++. +..|. ...+..+...+...|++++|...|.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2567888999999999999999998875 22222 34566677778889999999999888765
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=4.4e-06 Score=61.64 Aligned_cols=94 Identities=9% Similarity=-0.143 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS 220 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 220 (352)
.+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..+++..+..|.+...+..+...|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788889999999998887 3344 5778888888889999999999999999998888888999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 048142 221 RKWKKVKRIRELMAER 236 (352)
Q Consensus 221 g~~~~a~~~~~~m~~~ 236 (352)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887653
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=2e-05 Score=56.20 Aligned_cols=99 Identities=7% Similarity=-0.147 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP- 103 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 103 (352)
+...+..+...+...|++++|...+++..+... .+...|..+...|...|++++|++.|++..+.. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~ 73 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP----------EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDE 73 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccc
Confidence 345566677777788888888888888777543 345677778888888888888888888877642 22
Q ss_pred -CHhHHHHHHHHHhcc-CCHHHHHHHHHHhhHh
Q 048142 104 -DAITFVGVLVACSHA-GLVDERISHFNLMSEK 134 (352)
Q Consensus 104 -~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~ 134 (352)
+...+..+..++... |++++|.+.++.....
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 466677777788888 8888888888887754
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=1e-05 Score=61.97 Aligned_cols=96 Identities=10% Similarity=-0.069 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----h
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVK-PD----AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS----I 141 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~ 141 (352)
.++..+...|...|++++|++.+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777788888888888888888877653110 11 135556666666777777777777665542111111 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHh
Q 048142 142 EHYGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 142 ~~~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
..+..+...|...|++++|...+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444455555555555555555544
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=3.3e-05 Score=58.44 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
...+..+...+.+.|++++|...|++..+... .+...|..+..+|.+.|++++|+..|++..... +.+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 86 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH----------YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEP 86 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCT
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC----------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCc
Confidence 34555666677777888888888887777543 455677777777888888888888888777642 2245
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
..+..+..++...|++++|...|+...+.
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667777777788888888877777653
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.8e-05 Score=56.04 Aligned_cols=96 Identities=6% Similarity=-0.119 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 106 (352)
..|..+...+.+.|++++|...|++..+... .+...|..+..+|.+.|++++|+..|++..+.. +.+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 73 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP----------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHH
Confidence 3455555555666666666666666655432 344556666666666666666666666665531 22344
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
.|..+..++...|++++|...|++..+
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 555556666666666666666665554
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=4.5e-06 Score=62.18 Aligned_cols=92 Identities=5% Similarity=-0.066 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc-------chHHHHH
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG-------GSYVILS 214 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~li 214 (352)
+..+...|.+.|++++|+..|++. ...| +...|..+..+|...|++++|++.+++..+..|.+. .+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444555555555555555543 2222 244455555555555555555555555444322221 2344444
Q ss_pred HHHhhcCChHHHHHHHHHHHh
Q 048142 215 NRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..+...|++++|.+.|++...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555555555443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=6.6e-06 Score=60.63 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC-CCC----hhHH
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGI-RPS----IEHY 144 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~-~p~----~~~~ 144 (352)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+...- .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3467777777888888888888888877652 335566777777777777888777777776653110 111 4555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 048142 145 GCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m 167 (352)
..+...|.+.|++++|...|++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 56666666666666666666654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=4.3e-05 Score=56.99 Aligned_cols=98 Identities=8% Similarity=-0.159 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...|..+...+...|++++|...|.+..+... .+...|..+..+|...|++++|+..|++..+.. +.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~ 76 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----------LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQS 76 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc----------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chh
Confidence 345555555555555666666655555555432 234455555555555555666655555555431 123
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
...+..+..++...|++++|...|++..+
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=1.1e-05 Score=74.55 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=97.7
Q ss_pred HHhccCCHHHHHHHHHHhhHhcC--CC---C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCc-HHHHH
Q 048142 114 ACSHAGLVDERISHFNLMSEKYG--IR---P-SIEHYGCLVYILGRAGRIAKAEELIKNM---------PMALD-HFVLG 177 (352)
Q Consensus 114 ~~~~~g~~~~a~~~~~~m~~~~g--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 177 (352)
.+...|++++|..++++..+... +. | ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999988776422 11 2 2567899999999999999999998875 45566 57799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC---cchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLEL-----LPDN---GGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
.|...|...|++++|+.++++..+. ++.. ..+.+.+-.++...+.+++|..+|..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997652 3333 344567777888999999999999999863
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.5e-05 Score=60.88 Aligned_cols=130 Identities=14% Similarity=-0.008 Sum_probs=100.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCc-H
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNM-------PMALD-H 173 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~ 173 (352)
.++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++. +..+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888889999999999999988764111122 247788889999999999999999876 11111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C---CCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 174 FVLGGLLGACRIHDNLEAAERAAQQLLELL---P---DNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
.++..+...+...|++++|...+++..+.. . ....++..+...|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567778889999999999999999976531 1 1235677888999999999999999998764
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.15 E-value=7.9e-06 Score=75.54 Aligned_cols=119 Identities=11% Similarity=-0.003 Sum_probs=91.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcC
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHD 187 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 187 (352)
+...+.+.|++++|...+++..+. .| +...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334556778888888888887764 34 5777888888888888888888888876 3344 4778888889999999
Q ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHH--HhhcCChHHHHHHHHH
Q 048142 188 NLEAAERAAQQLLELLPDNGGSYVILSNR--YSSSRKWKKVKRIREL 232 (352)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 232 (352)
++++|.+.+++..+..|.+...+..+..+ +.+.|++++|.+.+++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999998888888888877777 8888999999999883
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.5e-05 Score=71.73 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|...|++..+..|.+...+..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888899999999999998886 3333 57888888899999999999999999999999999999999999999
Q ss_pred hcCChHHHH-HHHHHHHh
Q 048142 219 SSRKWKKVK-RIRELMAE 235 (352)
Q Consensus 219 ~~g~~~~a~-~~~~~m~~ 235 (352)
+.++.+++. +.+..|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999988776 45555543
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=5e-05 Score=70.13 Aligned_cols=157 Identities=8% Similarity=-0.041 Sum_probs=113.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 048142 31 SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVG 110 (352)
Q Consensus 31 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 110 (352)
.+...+.+.|++++|.+.+++..+... .+...|..+..+|.+.|++++|++.|++..+.. +-+..++..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 79 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNP----------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 79 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 334456788999999999999988643 457889999999999999999999999999852 335778899
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHH--HHHcCCHHHHHHHHH-----------hC-CC------
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYI--LGRAGRIAKAEELIK-----------NM-PM------ 169 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~-----------~m-~~------ 169 (352)
+..++...|++++|...|++..+. .| +...+..+..+ +.+.|++++|.+.++ +. ..
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 999999999999999999999875 33 34455555555 888899999999998 32 11
Q ss_pred ------CCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHH
Q 048142 170 ------ALDHFVLGGLLGACRIHDNL--EAAERAAQQLLE 201 (352)
Q Consensus 170 ------~p~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~ 201 (352)
..+......++..+...+.+ +.+..++.+..+
T Consensus 157 ~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e 196 (477)
T 1wao_1 157 PKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKE 196 (477)
T ss_dssp CCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 12344566677777665553 344445555544
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=5.6e-05 Score=55.69 Aligned_cols=91 Identities=15% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCC-h---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHH
Q 048142 114 ACSHAGLVDERISHFNLMSEKYGIRPS-I---EHYGCLVYILGRAGRIAKAEELIKNM-PMALD----HFVLGGLLGACR 184 (352)
Q Consensus 114 ~~~~~g~~~~a~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~ 184 (352)
.+...|++++|...|+...+. .|+ . ..+..+..+|.+.|++++|...|++. ...|+ ...+..+...+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334444455555544444432 111 1 23444444455555555555555443 11111 334444555555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCc
Q 048142 185 IHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
..|++++|...++++.+..|.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCh
Confidence 55666666666655555544443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=1.9e-05 Score=58.33 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCc-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---cchHHHHHHH
Q 048142 145 GCLVYILGRAGRIAKAEELIKNM-PMALD-H---FVLGGLLGACRIHDNLEAAERAAQQLLELLPDN---GGSYVILSNR 216 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~ 216 (352)
..+...+.+.|++++|...|++. ...|+ . ..+..+...+...|++++|...+++..+..|.+ +..+..+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34567788999999999999987 22233 2 577788889999999999999999999988887 6678889999
Q ss_pred HhhcCChHHHHHHHHHHHhcC
Q 048142 217 YSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 217 ~~~~g~~~~a~~~~~~m~~~g 237 (352)
|...|++++|.+.|++..+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998754
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.08 E-value=7e-05 Score=60.10 Aligned_cols=132 Identities=10% Similarity=0.009 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CccccccCCc-----------HHHHHHHHHHHHhcCChHHHHHHH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV-DVGLGMALKD-----------VMTLTALIVVLAMCGQGNKALEYF 93 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~-----------~~~~~~li~~~~~~g~~~~A~~~~ 93 (352)
...+..+...+...|++++|...|.+..+..... +. +. ...|..+..+|.+.|++++|+..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW------DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC------CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc------chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4567778888899999999999999998854221 00 11 267888888888899999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHH-HHHHhC
Q 048142 94 YEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAE-ELIKNM 167 (352)
Q Consensus 94 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~-~~~~~m 167 (352)
++..+. .+.+...+..+..++...|++++|...|++..+. .| +...+..+..++...++.+++. ..|..+
T Consensus 112 ~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 112 SKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888875 2335667788888888888888888888888754 34 5666777777777777666665 334433
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.05 E-value=0.00074 Score=58.72 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC
Q 048142 7 CEEALLLFREVQHKGLTGDKVTMVSLLLACTHLG--ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g 84 (352)
+++++.+++.+.... +-+..+|+.--..+.+.+ .+++++.+++.+.+... .|-..|+.-.-.+...|
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp----------rNy~AW~~R~~vl~~l~ 158 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE----------RNFHCWDYRRFVAAQAA 158 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhC
Confidence 578899999998753 337889988777777778 48999999999998765 78889999888888888
Q ss_pred C-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc--------------CCHHHHHHHHHHhhHhcCCCC-ChhHHHHHH
Q 048142 85 Q-GNKALEYFYEMQIRGVKPDAITFVGVLVACSHA--------------GLVDERISHFNLMSEKYGIRP-SIEHYGCLV 148 (352)
Q Consensus 85 ~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li 148 (352)
. ++++++.+.++.+... -|...|+.....+.+. +.++++++.+...... .| |...|+-+-
T Consensus 159 ~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r 234 (331)
T 3dss_A 159 VAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHR 234 (331)
T ss_dssp CCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 8 5999999999998743 3777777665555544 4578888988888764 45 677777655
Q ss_pred HHHHHc-----------CCHHHHHHHHHhC-CCCCcHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHhCCCCcchHH
Q 048142 149 YILGRA-----------GRIAKAEELIKNM-PMALDHFVLGGLLG-----ACRIHDNLEAAERAAQQLLELLPDNGGSYV 211 (352)
Q Consensus 149 ~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (352)
-.+.+. +.++++++.++++ ...||. .|..+-. +....|..+++...+.++.+.+|....-|.
T Consensus 235 ~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 235 WLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 555554 4578888888887 455664 3433222 223467788899999999999998877777
Q ss_pred HHHHHH
Q 048142 212 ILSNRY 217 (352)
Q Consensus 212 ~li~~~ 217 (352)
-+.+.+
T Consensus 314 d~~~~~ 319 (331)
T 3dss_A 314 DLRSKF 319 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=5.7e-05 Score=67.29 Aligned_cols=89 Identities=8% Similarity=-0.054 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
+...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...+++..+..|.+...+..+...+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4677888888999999999999999887 4455 4778888889999999999999999999999898888888888888
Q ss_pred hhcCChHHHHH
Q 048142 218 SSSRKWKKVKR 228 (352)
Q Consensus 218 ~~~g~~~~a~~ 228 (352)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00097 Score=62.82 Aligned_cols=171 Identities=9% Similarity=-0.062 Sum_probs=138.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHhHHHH
Q 048142 41 ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ----------GNKALEYFYEMQIRGVKPDAITFVG 110 (352)
Q Consensus 41 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ 110 (352)
..++|.+.++++.+... .+...|+.--.++...|+ ++++++.++++.+..-+ +..+|+.
T Consensus 44 ~~eeal~~~~~~l~~nP----------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~h 112 (567)
T 1dce_A 44 LDESVLELTSQILGANP----------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 112 (567)
T ss_dssp CSHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc----------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 44788999999998765 455678877777777776 99999999999986333 6778888
Q ss_pred HHHHHhccC--CHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH
Q 048142 111 VLVACSHAG--LVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAG-RIAKAEELIKNM-PMAL-DHFVLGGLLGACR 184 (352)
Q Consensus 111 ll~~~~~~g--~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 184 (352)
--..+.+.+ +++++...++++.+. .| +-..|+.-...+.+.| .++++++.++++ ...| |...|+.....+.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 888888888 779999999999975 44 7788888888888889 899999999988 4445 5788877776665
Q ss_pred hc--------------CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHH
Q 048142 185 IH--------------DNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225 (352)
Q Consensus 185 ~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 225 (352)
.. +.++++.+.+++.....|.+...|..+-..+.+.++.++
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 52 557999999999999999999999999888888887544
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=0.00012 Score=67.30 Aligned_cols=130 Identities=10% Similarity=-0.054 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCc-------------HHHHHHHHHHHHhcCChHHHHHH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKD-------------VMTLTALIVVLAMCGQGNKALEY 92 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~-------------~~~~~~li~~~~~~g~~~~A~~~ 92 (352)
...|..+...+.+.|++++|...|++.++..... ++ ...|+.+..+|.+.|++++|+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~--------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME--------YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC--------CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4577888889999999999999999998854320 11 46788888888888999999998
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHH-HHHhC
Q 048142 93 FYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEE-LIKNM 167 (352)
Q Consensus 93 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~-~~~~m 167 (352)
|++..+.. +.+...|..+..+|...|++++|...|++..+ +.| +...+..+..++.+.++.++|.. .+..|
T Consensus 340 ~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 340 CDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888752 33567788888888888888888888888864 355 55677777778888888777653 44444
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.03 E-value=7.7e-05 Score=54.81 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=53.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHH
Q 048142 30 VSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP-DAITF 108 (352)
Q Consensus 30 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 108 (352)
..+...+.+.|++++|...+++..+... .+...|..+..++...|++++|+..|++..+. .| +...+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~ 88 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP----------EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVH 88 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 3444455566666666666666665432 34455666666666666666666666666553 22 34455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhh
Q 048142 109 VGVLVACSHAGLVDERISHFNLMS 132 (352)
Q Consensus 109 ~~ll~~~~~~g~~~~a~~~~~~m~ 132 (352)
..+..++...|++++|...+++..
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666666654
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.02 E-value=3.5e-05 Score=59.20 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCcchH----HHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLEL-------LPDNGGSY----VILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
.|..+-.++...|++++|+..+++.++. .|.+...| .....++...|++++|.+.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777776 77777777 7777777778888888877777653
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1.8e-05 Score=57.68 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=57.0
Q ss_pred cCCChhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGL-TG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
..|++++|+..|++....+. .| +...|..+...+...|++++|...+++..+... .+...|..+..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP----------NHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CchHHHHHHHHHH
Confidence 35777778888877776431 12 345667777777777888888887777777643 3455677777777
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 048142 81 AMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~ 99 (352)
.+.|++++|++.|++....
T Consensus 72 ~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7778888888777776653
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=1.4e-05 Score=58.36 Aligned_cols=89 Identities=9% Similarity=-0.065 Sum_probs=59.0
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 048142 38 HLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH 117 (352)
Q Consensus 38 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 117 (352)
..|++++|...|++..+.+.. ++ .+...|..+..+|.+.|++++|++.|++..+.. +-+..++..+..++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-GK------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC-Cc------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 356777788888877775411 11 345667777788888888888888888877652 2245667777777788
Q ss_pred cCCHHHHHHHHHHhhHh
Q 048142 118 AGLVDERISHFNLMSEK 134 (352)
Q Consensus 118 ~g~~~~a~~~~~~m~~~ 134 (352)
.|++++|...+++....
T Consensus 74 ~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777664
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.98 E-value=4.3e-05 Score=59.19 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 174 FVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..|..+..++...|++++|+..+++..+..|.+...|..+..+|...|++++|.+.|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555555555555555555555555555443
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=3e-05 Score=68.19 Aligned_cols=148 Identities=10% Similarity=-0.086 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
....|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHH
Confidence 4456777788888899999999999987763 444331 22333333333211 1 12566777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH-hhcCChHH
Q 048142 149 YILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY-SSSRKWKK 225 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~ 225 (352)
.+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|++..+..|.+...+..+.... ...+..+.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888877765 2233 4677777777888888888888888887777777776776666653 34556677
Q ss_pred HHHHHHHHHhc
Q 048142 226 VKRIRELMAER 236 (352)
Q Consensus 226 a~~~~~~m~~~ 236 (352)
+.++|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=4e-05 Score=67.43 Aligned_cols=147 Identities=6% Similarity=-0.085 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRI 185 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 185 (352)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34566777778888888888888887653 343321 223344444443332 2378889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCc
Q 048142 186 HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNK 265 (352)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~ 265 (352)
.|++++|+..+++.++..|.+...|..+..+|...|++++|.+.|++..+.. |+.......+..+. ....+....+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~--~~~~~~~~~a 318 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALA--EQEKALYQKQ 318 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886533 33222222222111 2344555666
Q ss_pred hhhhhcCC
Q 048142 266 SEVLFDMD 273 (352)
Q Consensus 266 ~~~~~~~~ 273 (352)
...+..+-
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 66665553
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.89 E-value=0.0028 Score=55.38 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=133.1
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 048142 35 ACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG-QGNKALEYFYEMQIRGVKPDAITFVGVLV 113 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 113 (352)
...+.+..++|++++++++.... .+...||.--..+...| ++++++++++.+..... -+..+|+.--.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP----------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~w 131 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNP----------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLL 131 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCc----------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 33445566789999999998765 45667888888888888 59999999999998532 25667777666
Q ss_pred HHhcc-C-CHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHH--------HHHHHHHhC-CCC-CcHHHHHHHH
Q 048142 114 ACSHA-G-LVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIA--------KAEELIKNM-PMA-LDHFVLGGLL 180 (352)
Q Consensus 114 ~~~~~-g-~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~--------~A~~~~~~m-~~~-p~~~~~~~li 180 (352)
.+.+. + ++++++.+++.+.+. .| +-..|+--.-.+.+.|.++ ++++.++++ ... -|...|+.-.
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 66665 6 889999999999853 44 6777776666666666666 888888877 223 3688888888
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 181 GACRIHDN-------LEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 181 ~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
..+...+. ++++++.+++.....|.|...|+.+-..+.+.|+-
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 77777775 78999999999999999999999887777766654
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=0.00022 Score=63.46 Aligned_cols=126 Identities=6% Similarity=-0.040 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCC------------CCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIE------------VDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFY 94 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~ 94 (352)
..+..+...+.+.|++++|...|++.++.-.. .+. .+...|+.+..+|.+.|++++|++.++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP------VALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH------HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 45777888899999999999999988862100 011 345678888888889999999999998
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 048142 95 EMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 95 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
+..+.. +.+...|..+..++...|++++|...|++..+. .| +...+..+...+.+.++.+++.+
T Consensus 298 ~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 298 EALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888742 224667888888888889999998888888764 44 56667777777777777776654
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=7.1e-05 Score=69.04 Aligned_cols=123 Identities=11% Similarity=-0.126 Sum_probs=95.4
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCC---C-HhHHHHHHHHHhccCCHHHHHHHHHHhhHh----cCC-CC-ChhHHH
Q 048142 79 VLAMCGQGNKALEYFYEMQIR---GVKP---D-AITFVGVLVACSHAGLVDERISHFNLMSEK----YGI-RP-SIEHYG 145 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~---g~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~g~-~p-~~~~~~ 145 (352)
.+...|++++|+.++++..+. -+.| + ..+++.|..+|...|++++|..++++.... +|- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999987653 1222 2 457899999999999999999999887653 222 23 356789
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC---------CCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIKNM---------PMALDH-FVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
.|...|...|++++|+.++++. +..|++ .+.+.+-.++...+.++.|+.+++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876 344654 3445566677888999999999999876
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=3.8e-05 Score=54.91 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=75.0
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-------
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS------- 140 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~------- 140 (352)
++...|..+...+.+.|++++|++.|++..+. .+.+...+..+..++...|++++|...+++..+ +.|+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 45667888999999999999999999998875 233677888899999999999999999999874 4554
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
...+..+..++...|++++|...++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 455666666777777777776666555
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.82 E-value=0.00057 Score=52.66 Aligned_cols=107 Identities=10% Similarity=-0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcC------CCCCcccc---ccCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKN------IEVDVGLG---MALKDVMTLTALIVVLAMCGQGNKALEYFYEM 96 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~---~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m 96 (352)
...+......+.+.|++++|...|.+.++.- -.|+.... .. .+...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567778888999999999999999988750 00000000 00 34467888889999999999999999988
Q ss_pred HHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 97 QIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 97 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
.+.. +.+...|..+..++...|++++|...|+...+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 8752 335677888888889999999999988888754
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.77 E-value=0.00011 Score=56.44 Aligned_cols=114 Identities=9% Similarity=-0.075 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVY 149 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~ 149 (352)
..+......+.+.|++++|++.|++..+. .|+... . . + ....| +...|+.+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~--~------~------a----------~~~~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPP--E------E------A----------FDHAGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCT--T------S------C----------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcc--h------h------h----------hhhccchHHHHHHHHH
Confidence 34555666667777777777777777663 333100 0 0 0 00000 1225666666
Q ss_pred HHHHcCCHHHHHHHHHhC-C-------CCCc-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchH
Q 048142 150 ILGRAGRIAKAEELIKNM-P-------MALD-HFVL----GGLLGACRIHDNLEAAERAAQQLLELLPDNGGSY 210 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (352)
++.+.|++++|+..+++. . ..|+ ...| ...-.++...|++++|+..|++..+..|.|...+
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 666666666666665554 2 3676 5677 8888889999999999999999888766665443
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00042 Score=47.22 Aligned_cols=79 Identities=20% Similarity=0.109 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
...+..+...|.+.|++++|...|++. ...| +...|..+...+...|++++|...+++..+..|.+...+..+...+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445556666677777777777777665 2222 45666677777777777777777777777777777666666666554
Q ss_pred h
Q 048142 219 S 219 (352)
Q Consensus 219 ~ 219 (352)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 4
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00026 Score=51.09 Aligned_cols=62 Identities=10% Similarity=-0.090 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
+...+..+...|...|++++|...|++. ...| +...|..+...+...|++++|...|++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444555555555555555555443 1112 234444444455555555555555554443
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00013 Score=51.91 Aligned_cols=66 Identities=14% Similarity=-0.054 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++..+..|.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 334455555555666666666666554 1222 35555556666666666666666666666655554
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.00047 Score=48.49 Aligned_cols=64 Identities=25% Similarity=0.204 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 172 DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
+...|..+...+...|++++|+..|++..+..|.+...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556666666777777777777777777776676667777777777777777777777766543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.58 E-value=0.0028 Score=47.47 Aligned_cols=110 Identities=9% Similarity=-0.122 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh--
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM-- 82 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~-- 82 (352)
+++++|++.|++....| .|+.. |-..|...+.+++|.+.|++..+.|. ...++.|...|..
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~------------~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNS------------GNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHcCC
Confidence 35778888888888776 33333 55556666777888888888877653 2567777777777
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhhHh
Q 048142 83 --CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH----AGLVDERISHFNLMSEK 134 (352)
Q Consensus 83 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~ 134 (352)
.+++++|+++|++..+.| +...+..|-..|.. .++.++|..+|++..+.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 778888888888887765 45566666666666 77888888888877764
No 200
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.57 E-value=0.0097 Score=54.97 Aligned_cols=202 Identities=5% Similarity=-0.078 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChH
Q 048142 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGN 87 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~ 87 (352)
+.+..+|+++... .+-+...|...+.-+.+.|+++.|..+++..... | .+...|.. |+...+.+
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P--------~~~~l~~~----y~~~~e~~ 259 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---S--------DGMFLSLY----YGLVMDEE 259 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C--------CSSHHHHH----HHHHTTCT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C--------CcHHHHHH----HHhhcchh
Confidence 4567788888875 3446778888888888999999999999999988 3 23233332 22222222
Q ss_pred HHHHHHHHHHHcC---------CCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH-c
Q 048142 88 KALEYFYEMQIRG---------VKP---DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR-A 154 (352)
Q Consensus 88 ~A~~~~~~m~~~g---------~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~ 154 (352)
+. ++.+.+.- ..+ ....|...+....+.+.++.|..+|+.. +..+ .+...|-.....-.. .
T Consensus 260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHC
Confidence 22 22222210 011 1234666666666778899999999988 3212 244444432222222 3
Q ss_pred CCHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 155 GRIAKAEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 155 g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
++.+.|..+|+.. ...-++..|...+.-....|+.+.|..+|+.+. .....|...+..=...|+.+.+.+++++
T Consensus 334 ~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3699999999876 121124456667777788899999999999872 3456788888777788999999998888
Q ss_pred HHh
Q 048142 233 MAE 235 (352)
Q Consensus 233 m~~ 235 (352)
+..
T Consensus 410 ~~~ 412 (493)
T 2uy1_A 410 KMD 412 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00078 Score=48.46 Aligned_cols=80 Identities=8% Similarity=-0.133 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH
Q 048142 44 VGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDE 123 (352)
Q Consensus 44 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 123 (352)
.|.+.+++..+... .+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++
T Consensus 3 ~a~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGT----------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTC----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 35566666665432 455677788888888888888888888877642 2345667777778888888888
Q ss_pred HHHHHHHhhHh
Q 048142 124 RISHFNLMSEK 134 (352)
Q Consensus 124 a~~~~~~m~~~ 134 (352)
|...|++..+.
T Consensus 72 A~~~~~~al~~ 82 (115)
T 2kat_A 72 ARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777653
No 202
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.48 E-value=0.014 Score=53.95 Aligned_cols=172 Identities=9% Similarity=-0.122 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 048142 43 EVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD 122 (352)
Q Consensus 43 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 122 (352)
+.+..+|++++.... .+...|-..+.-+.+.|+.++|..+|++.... |+....-. .|+...+.+
T Consensus 196 ~Rv~~~ye~al~~~p----------~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~ 259 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY----------YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEE 259 (493)
T ss_dssp HHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCT
T ss_pred HHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchh
Confidence 456778888887543 34568888888889999999999999999987 55443222 222221112
Q ss_pred HHHHHHHHhhHhc---C-----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CcHHHHHHHHHHHHh-cCCH
Q 048142 123 ERISHFNLMSEKY---G-----IRP---SIEHYGCLVYILGRAGRIAKAEELIKNMPMA-LDHFVLGGLLGACRI-HDNL 189 (352)
Q Consensus 123 ~a~~~~~~m~~~~---g-----~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~-~g~~ 189 (352)
+. ++.+.+.+ . ..+ ....|-..+..+.+.+.++.|..+|++.... ++...|......-.. .++.
T Consensus 260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCCh
Confidence 21 33333221 0 011 2345667777777788899999999988211 234445332222222 3369
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 190 EAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
+.|..+|+...+..|.++..+...++...+.|+.+.|..+|+..
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998877777777777888888999999999999986
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.45 E-value=0.00025 Score=64.33 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHhC---------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCcchHHHHHH
Q 048142 154 AGRIAKAEELIKNM---------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL--------LPDNGGSYVILSN 215 (352)
Q Consensus 154 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~li~ 215 (352)
.|++++|+.++++. +..|+ ..+++.|...|...|++++|+.++++.++. .|....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57889999988765 34455 578999999999999999999999997653 2334567899999
Q ss_pred HHhhcCChHHHHHHHHHHH
Q 048142 216 RYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 216 ~~~~~g~~~~a~~~~~~m~ 234 (352)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999998865
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.44 E-value=0.001 Score=50.01 Aligned_cols=111 Identities=12% Similarity=-0.084 Sum_probs=74.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH----cCCHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR----AGRIA 158 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~ 158 (352)
.+++++|+++|++..+.| .|+.. |-..|...+.+++|..+|++..+. | ++..+..|-..|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHH
Confidence 346788888888888776 33333 556666667777888888877764 3 55666677777776 67777
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 048142 159 KAEELIKNMPMALDHFVLGGLLGACRI----HDNLEAAERAAQQLLEL 202 (352)
Q Consensus 159 ~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 202 (352)
+|...|++.-..-++..+..|-..|.. .++.++|...|++..+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 777777776222355566666666666 66777777777766554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=0.00031 Score=53.85 Aligned_cols=99 Identities=9% Similarity=-0.040 Sum_probs=78.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHcCCCCCccccccCCcHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGAL----------EVGMWLHPYIMKKNIEVDVGLGMALKDVMTL 73 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 73 (352)
.+.+++|++.++...... +-+...|+.+-.++.+.+++ ++|+..|++.++... .+...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP----------~~~~A~ 83 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP----------KKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT----------TCHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc----------CcHHHH
Confidence 456889999999988753 33788888888888887764 599999999998764 466789
Q ss_pred HHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 048142 74 TALIVVLAMCG-----------QGNKALEYFYEMQIRGVKPDAITFVGVLVAC 115 (352)
Q Consensus 74 ~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 115 (352)
+.+..+|.+.| ++++|++.|++..+ +.|+...|...+...
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999998874 89999999999988 678877776555543
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0025 Score=43.11 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
.|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444455555555555555444431 11333444444455555555555555555443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.38 E-value=0.00099 Score=46.77 Aligned_cols=85 Identities=15% Similarity=0.017 Sum_probs=61.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.+...|..+...|.+.|++++|++.|++..+.. +.+...|..+..++...|++++|...|++..+...-.++......+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 456678888899999999999999999988753 2245678888889999999999999988877531223344444444
Q ss_pred HHHHHH
Q 048142 148 VYILGR 153 (352)
Q Consensus 148 i~~~~~ 153 (352)
...+.+
T Consensus 84 ~~~l~~ 89 (100)
T 3ma5_A 84 QDAKLK 89 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00048 Score=62.49 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=70.4
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCcch
Q 048142 148 VYILGRAGRIAKAEELIKNM---------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL--------LPDNGGS 209 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~ 209 (352)
+..+.+.|++++|+.++++. +..|+ ..+++.|...|...|++++|+.++++.++. .|....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566789999999998765 23344 568899999999999999999999997653 2334567
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 210 YVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 210 ~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8899999999999999999998865
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.35 E-value=0.0089 Score=56.23 Aligned_cols=167 Identities=11% Similarity=-0.036 Sum_probs=129.7
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCCccccccCCcHHHHH
Q 048142 6 ACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGA----------LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLT 74 (352)
Q Consensus 6 ~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 74 (352)
..++|++.++++... .| +..+|+.--..+...|+ ++++.+.++.+.+... .+..+|+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p----------K~y~aW~ 111 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----------KSYGTWH 111 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT----------TCHHHHH
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC----------CCHHHHH
Confidence 346788888888875 45 56678776666666676 8999999999998765 6778999
Q ss_pred HHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHH
Q 048142 75 ALIVVLAMCG--QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG-LVDERISHFNLMSEKYGIRP-SIEHYGCLVYI 150 (352)
Q Consensus 75 ~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 150 (352)
.-.-.+.+.+ +++++++.++++.+.... |..+|+.--..+.+.| ..+++.+.++++.+ ..| +...|+.....
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~l 187 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHH
Confidence 9888888999 679999999999997433 7788888887888888 89999999999875 345 77888887777
Q ss_pred HHHc--------------CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCC
Q 048142 151 LGRA--------------GRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDN 188 (352)
Q Consensus 151 ~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~ 188 (352)
+.+. +.+++|++.+++. ...| |...|.-+-..+...+.
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 7663 5578898888776 3344 46777777766666665
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.002 Score=58.36 Aligned_cols=85 Identities=14% Similarity=-0.000 Sum_probs=69.9
Q ss_pred ccCCHHHHHHHHHHhhHhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCc-HHHHHHHH
Q 048142 117 HAGLVDERISHFNLMSEKYG--IRP----SIEHYGCLVYILGRAGRIAKAEELIKNM---------PMALD-HFVLGGLL 180 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li 180 (352)
..|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46789999999988776422 222 2577899999999999999999999876 45676 57799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048142 181 GACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~ 201 (352)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999765
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.0067 Score=54.92 Aligned_cols=91 Identities=4% Similarity=-0.090 Sum_probs=73.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCc-HH
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYG--IRP----SIEHYGCLVYILGRAGRIAKAEELIKNM---------PMALD-HF 174 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~ 174 (352)
.+..+.+.|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 35556678999999999998875321 222 2567899999999999999999998876 45566 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999999765
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.88 E-value=0.004 Score=47.64 Aligned_cols=85 Identities=19% Similarity=0.019 Sum_probs=59.5
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHcCCCCC-H
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGN----------KALEYFYEMQIRGVKPD-A 105 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~----------~A~~~~~~m~~~g~~p~-~ 105 (352)
.+.+.+++|.+.++...+... .+...|+.+..++...++++ +|+..|++..+. .|+ .
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P----------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP----------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcH
Confidence 456778999999999988764 57778888888888877654 777777777663 443 4
Q ss_pred hHHHHHHHHHhccC-----------CHHHHHHHHHHhhH
Q 048142 106 ITFVGVLVACSHAG-----------LVDERISHFNLMSE 133 (352)
Q Consensus 106 ~t~~~ll~~~~~~g-----------~~~~a~~~~~~m~~ 133 (352)
.+|..+-.+|...| ++++|...|++..+
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 56666766766553 55666666655553
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.77 E-value=0.012 Score=40.61 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 171 LDHFVLGGLLGACRIHDN---LEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 171 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
.|+..+..+..++...++ .++|..++++.++..|.++.....+...+.+.|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345666666666644433 67888888888888888888888888888888888888888888876544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.75 E-value=0.0076 Score=41.61 Aligned_cols=63 Identities=19% Similarity=0.105 Sum_probs=43.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchH
Q 048142 148 VYILGRAGRIAKAEELIKNM-PMAL-DHF-VLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSY 210 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (352)
...+.+.|++++|...|++. ...| +.. .|..+...+...|++++|...|++..+..|.+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44566777777777777765 2233 345 677777777777888888888888777777766555
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.04 Score=48.28 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHhc--c---CChHHHHHHHHHHHHcCC
Q 048142 22 LTGDKVTMVSLLLACTH--L---GALEVGMWLHPYIMKKNI 57 (352)
Q Consensus 22 ~~p~~~t~~~li~~~~~--~---g~~~~a~~~~~~m~~~g~ 57 (352)
.+.+...|...+.+... . ..+.+|..+|++..+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP 230 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP 230 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 34567777777766533 2 245789999999988653
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.43 E-value=0.011 Score=40.82 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 179 LLGACRIHDNLEAAERAAQQLLELLPDNGG-SYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
....+...|++++|...+++..+..|.+.. .|..+...|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345677899999999999999999999988 99999999999999999999999988764
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.40 E-value=0.091 Score=46.04 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=75.7
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC--ChHHHHHHHHHHHH-cCCCCCccccccCCcHHHHHHHHH
Q 048142 6 ACEEALLLFREVQHKGLTGD-KVTMVSLLLACTH---LG--ALEVGMWLHPYIMK-KNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 6 ~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~---~g--~~~~a~~~~~~m~~-~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
...+|..+|++.... .|+ ...|..+.-++.. .+ .-.....+-..+.. .....+. .+..+|.++..
T Consensus 214 ~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~------~~a~~~~alal 285 (372)
T 3ly7_A 214 SLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN------NLSIIYQIKAV 285 (372)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC------cCHHHHHHHHH
Confidence 357899999999874 565 4455544433321 11 11111111111111 1112222 56667777776
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHH
Q 048142 79 VLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHY 144 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 144 (352)
.+...|++++|+..+++....+ |+...|..+-..+.-.|++++|.+.|++... +.|...+|
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 6666788888888888888764 6777777777777778888888888877764 36666554
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.32 E-value=0.056 Score=52.81 Aligned_cols=129 Identities=15% Similarity=-0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH
Q 048142 74 TALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR 153 (352)
Q Consensus 74 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 153 (352)
..++..+.+.|..++|+++.+. .. .-+......|++++|.++.+.+ .+...|..|...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHH
Confidence 6666667777777777765531 11 1122334567777777764333 356677778888888
Q ss_pred cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 154 AGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 154 ~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
.|+++.|.+.|.+++ | |..+...+...|+.+...++.+..... .-++....+|.+.|++++|.+++.+
T Consensus 694 ~~~~~~A~~~y~~~~---d---~~~l~~l~~~~~~~~~~~~~~~~a~~~-----~~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAH---D---LESLFLLHSSFNNKEGLVTLAKDAETT-----GKFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTCHHHHHHHHHHHT---C---HHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcc---C---hhhhHHHHHHcCCHHHHHHHHHHHHHc-----CchHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887775 1 223344444456666555544443321 1233334445556666666665553
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.27 Score=38.07 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=88.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 048142 35 ACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVA 114 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 114 (352)
...+.|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|.+..+ |..+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l---------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~L 69 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL---------------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFL 69 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHH
Confidence 345789999999987765 3456899999999999999999999987653 3445555
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048142 115 CSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAER 194 (352)
Q Consensus 115 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~ 194 (352)
|.-.|+.+.-..+-+....+ | -++.-...+.-.|+++++.++|.+.+.-|....+ ....|..+.|.+
T Consensus 70 y~~tg~~e~L~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~ 136 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASA 136 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHH
Confidence 66677777666554444332 2 2455566677789999999999888743432221 223666777777
Q ss_pred HHHHH
Q 048142 195 AAQQL 199 (352)
Q Consensus 195 ~~~~~ 199 (352)
+.+.+
T Consensus 137 ~~~~~ 141 (177)
T 3mkq_B 137 FLEQA 141 (177)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76665
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.94 E-value=0.32 Score=35.78 Aligned_cols=140 Identities=7% Similarity=0.010 Sum_probs=100.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
.-.|..++..++..+..... +..-||-+|--....-+-+-..++++.+-+.+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 44677888888888876642 44445555555555566666677776665432222 35555555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 161 EELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 161 ~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
...+-.++ .+..-.+.-+..+...|.-|.-.++...+....++++.....+..+|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555554 244455667788889999999999999977778888889999999999999999999999999999985
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.94 E-value=0.06 Score=40.68 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 7 CEEALLLFREVQHKGLTGDKVTMVSLLLACTHLG---ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
...+.+-|.+....|. ++..+...+..++++.+ +++++..++++..+... |+ .+...+-.|.-+|.+.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-p~-------~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-KE-------EQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cc-------chHHHHHHHHHHHHHc
Confidence 4556666666666554 67777777777777777 56688888888887651 10 1223444556667888
Q ss_pred CChHHHHHHHHHHHHcCCCCCH
Q 048142 84 GQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
|++++|.+.++...+ +.|+.
T Consensus 85 ~~Y~~A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp SCHHHHHHHHHHHHH--HCTTC
T ss_pred cCHHHHHHHHHHHHh--cCCCC
Confidence 888888888888887 56653
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.86 E-value=0.068 Score=52.24 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.+...|..|...+.+.++++.|.+.|.++.. |..+...+...|+.+....+-+..... | -++.-
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A 742 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLA 742 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHH
Confidence 3445677777777777777777777766542 223333333355554444433333322 1 12223
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 048142 148 VYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m 167 (352)
..+|.+.|++++|.+++.++
T Consensus 743 ~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 743 FNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHc
Confidence 33444555555555555554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.12 Score=35.44 Aligned_cols=66 Identities=6% Similarity=-0.097 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048142 24 GDKVTMVSLLLACTHLGA---LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 24 p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
+|...+..+..++...++ .++|..++++..+... .++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp----------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP----------YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666666666644443 5788888888777554 45566777777778888888888888888764
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.59 E-value=0.13 Score=35.95 Aligned_cols=70 Identities=20% Similarity=0.054 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHH
Q 048142 142 EHYGCLVYILGRAGRIAKAEELIKNM-----P----MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYV 211 (352)
Q Consensus 142 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (352)
..+-.|...+.+.|+++.|...|+.. + -.+....+..|..++.+.|+++.|...+++..+..|.+..+.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33445555566666666666665553 0 1234667777777888888888888888888777777755533
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.10 E-value=0.2 Score=34.99 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048142 24 GDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP 103 (352)
Q Consensus 24 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 103 (352)
.+..-+..+...+.+.|++..|...+++..+.-...+. ...+....+..|..+|.+.|++++|+..+++..+ +.|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P 77 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDP 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCC
Confidence 35556677888899999999999999988764211100 0005667899999999999999999999999987 466
Q ss_pred CH
Q 048142 104 DA 105 (352)
Q Consensus 104 ~~ 105 (352)
+.
T Consensus 78 ~~ 79 (104)
T 2v5f_A 78 EH 79 (104)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.50 E-value=0.23 Score=41.89 Aligned_cols=83 Identities=8% Similarity=0.021 Sum_probs=68.8
Q ss_pred HHHHHHHHHhC-CCCCc---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHhhc-CChHH
Q 048142 157 IAKAEELIKNM-PMALD---HFVLGGLLGACRI-----HDNLEAAERAAQQLLELLPD-NGGSYVILSNRYSSS-RKWKK 225 (352)
Q Consensus 157 ~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~-g~~~~ 225 (352)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|.+.|++.++..|. +..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666665 44555 6688888888888 49999999999999999886 489999999999884 99999
Q ss_pred HHHHHHHHHhcCCC
Q 048142 226 VKRIRELMAERNIK 239 (352)
Q Consensus 226 a~~~~~~m~~~g~~ 239 (352)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999988777
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.44 E-value=0.39 Score=40.50 Aligned_cols=85 Identities=9% Similarity=-0.035 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc-----CChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHH
Q 048142 7 CEEALLLFREVQHKGLTGD---KVTMVSLLLACTHL-----GALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
...|...+++... +.|+ ...|..+...|.+. |+.++|.+.|++.++.+.. .+..++.....
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~---------~~id~~v~YA~ 247 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA---------HDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT---------TCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC---------CCchHHHHHHH
Confidence 3455555555555 3454 45666666666663 6777777777777765432 12455666666
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCC
Q 048142 79 VLAMC-GQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 79 ~~~~~-g~~~~A~~~~~~m~~~g~~ 102 (352)
.++.. |+.++|.+.+++.......
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 66663 7777777777777665444
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.32 E-value=0.98 Score=34.01 Aligned_cols=65 Identities=9% Similarity=-0.036 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 68 KDVMTLTALIVVLAMCG---QGNKALEYFYEMQIRGVKP--DAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
++..+...+.-++++.+ +.++++.+|++..+.. .| +...+-.|.-++.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444555555555 4446666666655542 23 122222333344556666666666666554
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.17 E-value=1.5 Score=42.34 Aligned_cols=51 Identities=18% Similarity=0.043 Sum_probs=36.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
|...|+++.|..+.++.....|.+-.+|..|...|...|+++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445677777777777777777777777777777777777777777766665
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.04 E-value=1.6 Score=33.74 Aligned_cols=126 Identities=18% Similarity=0.141 Sum_probs=91.2
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
+.|+++.|.++-+++ -+...|..|-....+.|+++-|.+.|..... |..+.-.|..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------------~~~L~~Ly~~ 72 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------------FDKLSFLYLV 72 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------------HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------------HHHHHHHHHH
Confidence 569999999998766 3688999999999999999999999987632 4556666777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
.|+.++-.++-+.....| -++....++.-.|+++++.+++.+..+ -|.. .-.-...|..+.|.+
T Consensus 73 tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA------~~~A~t~g~~~~a~~ 136 (177)
T 3mkq_B 73 TGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPLA------YAVAKANGDEAAASA 136 (177)
T ss_dssp HTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHH------HHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHH------HHHHHHcCcHHHHHH
Confidence 888877665555544443 245666677778999999998866532 2211 111223677888999
Q ss_pred HHHhCC
Q 048142 163 LIKNMP 168 (352)
Q Consensus 163 ~~~~m~ 168 (352)
+.++++
T Consensus 137 ~~~~~~ 142 (177)
T 3mkq_B 137 FLEQAE 142 (177)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 988875
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.91 E-value=0.18 Score=44.81 Aligned_cols=69 Identities=13% Similarity=-0.024 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH-----hcCCCCCCce
Q 048142 176 LGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA-----ERNIKKPPGC 244 (352)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~ 244 (352)
...++..+...|+.+++...++.+....|.+...|..+|.+|.+.|+..+|.+.|+... +.|+.|.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34466777889999999999999999999999999999999999999999999998875 4699987543
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.36 E-value=0.81 Score=40.59 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCcHHHH
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM--------PMALDHFVL 176 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~ 176 (352)
...++.++...|+.+++...+..+... -+.+...|..+|.+|.+.|+..+|++.|+.. |+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666777788888888888777653 2336778888888888888888888887664 778887664
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.98 E-value=2 Score=29.68 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+ +.+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 45567777777777889999999999999999999999999999999875 44445567777654
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.77 E-value=1.4 Score=31.99 Aligned_cols=67 Identities=16% Similarity=0.041 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHhccCChHH---HHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 24 GDKVTMVSLLLACTHLGALEV---GMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 24 p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
|+..+--.+..++.+..+... +..+++.+.+.+.+ . ......-.|.-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p-~-------~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-E-------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc-c-------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445555555554433 55666665554310 0 0111222344555666666666666666665
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.40 E-value=3.3 Score=30.52 Aligned_cols=78 Identities=14% Similarity=-0.020 Sum_probs=45.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
+|+.......+-.+- -+...+...++.+...|+-++-..++..+.. ..+|++...-.+..+|.+-|+..+|.+
T Consensus 74 C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp CSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 445555555544322 1334445556666666777666666666432 345566666666667777777777777
Q ss_pred HHHhC
Q 048142 163 LIKNM 167 (352)
Q Consensus 163 ~~~~m 167 (352)
++.+.
T Consensus 147 Ll~~A 151 (172)
T 1wy6_A 147 LLIEA 151 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.21 E-value=8.2 Score=34.77 Aligned_cols=187 Identities=11% Similarity=0.033 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCccccccCCcHHHH--HHH
Q 048142 5 SACEEALLLFREVQHK-----GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK-KNIEVDVGLGMALKDVMTL--TAL 76 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~l~~~~~~--~~l 76 (352)
|++++|++.+..+.+. ...-+......++..|...|+++...+.+..+.+ +|.. +...+. +.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql---------k~ai~~~V~~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL---------KLSIQYMIQKV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS---------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHH
Confidence 5677787777666542 2333566677788888888888887776665554 3332 222221 222
Q ss_pred HHHHHhcCChHHHHH--HHHHHHH--cC-CCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhc-CCCCC---hhHH
Q 048142 77 IVVLAMCGQGNKALE--YFYEMQI--RG-VKP---DAITFVGVLVACSHAGLVDERISHFNLMSEKY-GIRPS---IEHY 144 (352)
Q Consensus 77 i~~~~~~g~~~~A~~--~~~~m~~--~g-~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-g~~p~---~~~~ 144 (352)
+.........+.... +.+.... .| +-. .......|...+-..|++.+|..++..+.... |..+. ...+
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222222332222111 1111100 01 111 11122345666667777777777777765431 22221 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048142 145 GCLVYILGRAGRIAKAEELIKNM-------PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (352)
..-++.|...+++..|..+++++ +..|+ ...+..++..+...+++.+|-+.|.+..
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56666777777777777776664 11222 2334445555566666766666666654
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.37 E-value=6.6 Score=37.93 Aligned_cols=128 Identities=17% Similarity=0.079 Sum_probs=81.9
Q ss_pred HHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHc------CC
Q 048142 30 VSLLLACTHLGA-LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG-QGNKALEYFYEMQIR------GV 101 (352)
Q Consensus 30 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~ 101 (352)
..++.-+...++ .+.|..+++++.+.... .+......+|..+.+.+ +--+|..++.+..+. ..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~---------~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l 322 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPI---------HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDL 322 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGG---------GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCc---------hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhh
Confidence 345555555666 58899999999887532 12222233444433333 233566666655431 12
Q ss_pred CCCHh------HH-HHH----HHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 048142 102 KPDAI------TF-VGV----LVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNMPM 169 (352)
Q Consensus 102 ~p~~~------t~-~~l----l~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 169 (352)
.+... .+ ..| ..-|...|+++-|+.+-++... +.| +-.+|..|..+|...|+++.|+-.++.+|+
T Consensus 323 ~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 323 PPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 22211 01 112 3345568999999999988875 466 578999999999999999999999999863
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.12 E-value=3.8 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCC
Q 048142 68 KDVMTLTALIVVLAMCGQG------NKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~ 104 (352)
.|..+|-..+...-+.|+. ++..++|++.... ++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 4566666666666666666 6666666666554 5554
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.02 E-value=0.92 Score=34.00 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=43.8
Q ss_pred CHhHHHHHHHHHhccCCH------HHHHHHHHHhhHhcCCCCChh-HHHHHHHH------HHHcCCHHHHHHHHHhC---
Q 048142 104 DAITFVGVLVACSHAGLV------DERISHFNLMSEKYGIRPSIE-HYGCLVYI------LGRAGRIAKAEELIKNM--- 167 (352)
Q Consensus 104 ~~~t~~~ll~~~~~~g~~------~~a~~~~~~m~~~~g~~p~~~-~~~~li~~------~~~~g~~~~A~~~~~~m--- 167 (352)
|..+|-..+...-+.|+. +...++|++... .++|+.. .|...|.. +...+++++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555545555 555556655554 3444311 11111110 11224555555555544
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 168 PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
.-+- ...|-....--.+.|+++.|.+++.+..+..|...
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 1111 44444444444455555555555555554444333
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.86 E-value=2.9 Score=30.29 Aligned_cols=79 Identities=15% Similarity=0.005 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH---HHHHHHHhhHhcCCCC--ChhHHHHHHHHHHHcCCHHHH
Q 048142 86 GNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDE---RISHFNLMSEKYGIRP--SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 86 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A 160 (352)
...+.+-|.+....|. |+..+-..+..++.+.....+ ++.++++..+. + .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444455554444443 555555555566666665554 66666666543 1 12 122222344455566666666
Q ss_pred HHHHHhC
Q 048142 161 EELIKNM 167 (352)
Q Consensus 161 ~~~~~~m 167 (352)
.+.++.+
T Consensus 94 ~~~~~~l 100 (126)
T 1nzn_A 94 LKYVRGL 100 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.60 E-value=2.9 Score=28.86 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 168 PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
...|++.+..+.+.+|.+.+++..|.++++-++....+...+|..++.
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 566888888888899988889999999988887765555556776654
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.08 E-value=0.0022 Score=57.76 Aligned_cols=179 Identities=12% Similarity=0.201 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
..|..|..++.+.++..+|++-|-+ .-|+..|..++.+..+.|.+++-...+...++. .- ++..=+.|+-+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k--e~~IDteLi~a 125 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR--ESYVETELIFA 125 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC--STTTTHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc--ccccHHHHHHH
Confidence 4699999999999999999877622 125667889999999999999998877666543 33 44445589999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------CCCCcch
Q 048142 151 LGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLEL---------------------LPDNGGS 209 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------~~~~~~~ 209 (352)
|++.+++.+-.+++. .|+..-...+-.-|...|.++.|.-+|..+..- ...++.|
T Consensus 126 yAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999887766653 355555556677777788887777766654321 2347789
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 210 YVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 210 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
|.-+-.+|...+.+.-|--.--.+. +.|| .+..+++.|...|+.++.+.+++.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad------eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD------ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS------CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999887755433332 2222 234577778999999999988763
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.66 E-value=4.6 Score=29.53 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
|.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+ +.+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 44466666777777788999999999999999999999999999998875 44556667777654
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.85 E-value=2.1 Score=43.76 Aligned_cols=145 Identities=8% Similarity=-0.080 Sum_probs=94.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC-----------------
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM--PMAL----------------- 171 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p----------------- 171 (352)
++..+.+.+..+.+.++.... +.++..--.+..+|...|++++|.++|++. ++.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 444444555555554433222 224433345667788999999999999887 1110
Q ss_pred ------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc-----chHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 172 ------DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG-----GSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 172 ------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
-..=|..++..+-+.+.++.+.++.+...+..+++. ..|..+.+.+...|++++|...+-.+.+...+.
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 112356677788889999999999888776433322 257888999999999999999998887766653
Q ss_pred CCceeEEEEcceeehhhhcCcccCchh
Q 048142 241 PPGCILIEVDGVVHEFVKAGFVPNKSE 267 (352)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~G~~~~~~~ 267 (352)
+ .++.++..+|+.|..+.-..
T Consensus 972 ~------cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 972 S------CLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp H------HHHHHHHHHHHHCCHHHHHH
T ss_pred H------HHHHHHHHHHhCCChhhhhC
Confidence 2 23445566666665544433
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.74 E-value=6.1 Score=30.06 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=42.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-CCCCCH-------hHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIR-GVKPDA-------ITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
-+..+...+.++.|+-+...+... +..|+. .++..+.+++...+++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 356677888999988887775432 123332 3566778888999999999999988654
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.20 E-value=7.4 Score=28.47 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=39.8
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 167 MPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 167 m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
+..-|++.+..+.+.+|.+.+|+..|.++++-++....+...+|..++.
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3567899999999999999999999999999988766555667876655
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.03 E-value=26 Score=31.46 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=118.9
Q ss_pred CChHHHHHHHHHHHHcC-CCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHhHH--HHHHHHH
Q 048142 40 GALEVGMWLHPYIMKKN-IEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR-GVKPDAITF--VGVLVAC 115 (352)
Q Consensus 40 g~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~--~~ll~~~ 115 (352)
|+++.|.+.+-.+.+.. ...|.. .+......++..|...++++...+.+..+... |..+...+. ..++...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~-----s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLA-----SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTT-----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchh-----hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 67888888777666532 111211 34567788999999999999998888766543 433333331 2222322
Q ss_pred hccCCHHH--HHHHHHHhhHhcCCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCc---HHHHH
Q 048142 116 SHAGLVDE--RISHFNLMSEKYGIRP--------SIEHYGCLVYILGRAGRIAKAEELIKNM-----PMALD---HFVLG 177 (352)
Q Consensus 116 ~~~g~~~~--a~~~~~~m~~~~g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~---~~~~~ 177 (352)
......+. -..+.+... .+.. .......|...|...|++.+|.+++..+ +..+. ...|.
T Consensus 105 ~~~~~~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22333222 222222221 1211 1233456788899999999999999987 21111 45667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---hCCCC----cchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLE---LLPDN----GGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
..+..|...+++..|..+++++.. ..++. ...|...+..+...+++.+|.+.|.+..
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777899999999999999998753 22222 2456777888888999999888877764
No 248
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=82.42 E-value=7.1 Score=31.09 Aligned_cols=190 Identities=9% Similarity=-0.026 Sum_probs=97.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH--HH
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITF--VG 110 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ 110 (352)
+...++.|+.+....+++.+.+.|..++. +|..-++.| ...+..|+.+ +++.+.+.|..|+.... .+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDI------YNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCC------CCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCc------ccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCC
Confidence 44457789999998888888888776655 333333333 3334566654 44555566766554321 13
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcH---HHHHHHHHHHH
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYGIRP---SIEHYGCLVYILGRAGRIAKAEELIKNMPMALDH---FVLGGLLGACR 184 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~---~~~~~li~~~~ 184 (352)
.+...+..|+.+-+..+++..... ++.+ +....+ .+..-++.|+.+-...+++.- ..++. ..-.+.+...+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPG-TLDLEARNYDGLT-ALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTT-SCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-cccccccCcCCCc-HHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHH
Confidence 344455678887776666554321 1222 222222 233445667777666666543 22211 11223344455
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 185 IHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
..|+.+-+..+++.-......+..-. +.+...+..|+.+ +.+.+.+.|..|+
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHGANVNAQMYSGS-SALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HTTCHHHHHHHHHTTCCTTCBCTTSC-BHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 67777665555543211111121112 2333445566655 4444555777654
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.12 E-value=14 Score=26.97 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048142 23 TGDKVTMVSLLLACTHLGA---LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
.|+..|--....++.+..+ ..++..+++++.+.+.. .....+--|.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~---------~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~- 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE- 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG---------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc---------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 4455444444445555443 34577777777765521 1223344455667777777777777777766
Q ss_pred CCCCCH
Q 048142 100 GVKPDA 105 (352)
Q Consensus 100 g~~p~~ 105 (352)
+.|+.
T Consensus 107 -~eP~N 111 (134)
T 3o48_A 107 -HERNN 111 (134)
T ss_dssp -TCTTC
T ss_pred -hCCCC
Confidence 45553
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.71 E-value=12 Score=25.76 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=24.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
+...|++++|..+.+.+ ..||...|.+|-. .+.|..+++...+.++..
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34456666665554432 3555555544432 245555555555544443
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.57 E-value=0.00042 Score=62.32 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 106 (352)
..|+.|..+....+.+.+|.+.| +.. .|...|...|.+..+.|.+++-+..+.-.++..-.| .
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy-------IkA--------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~ 117 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY-------IKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--Y 117 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS-------CCC--------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--T
T ss_pred cHHHHHHHHHHccCchHHHHHHH-------HhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--c
Confidence 34566666665566555554332 111 122345666666666666666666554433332222 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC------------------
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP------------------ 168 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------ 168 (352)
.=+.|+-+|++.+++.+-.++ =-.|+..-...+.+-|-..|.++.|.-+|..++
T Consensus 118 IDteLi~ayAk~~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 118 VETELIFALAKTNRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp TTHHHHHHHHTSCSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSS
T ss_pred cHHHHHHHHHhhCcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 233566666666665442221 112444444455555556666666655555441
Q ss_pred -----CCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048142 169 -----MALDHFVLGGLLGACRIHDNLEAAER 194 (352)
Q Consensus 169 -----~~p~~~~~~~li~~~~~~g~~~~a~~ 194 (352)
..-++.||.-+-.+|...+++..|..
T Consensus 190 VdaArKAns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 190 VDGARKANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp TTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence 11345667776667766665555433
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.24 E-value=68 Score=32.76 Aligned_cols=132 Identities=14% Similarity=-0.033 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC--------------CcHHHHHHHHHHHHhcCChHHHH
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL--------------KDVMTLTALIVVLAMCGQGNKAL 90 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------~~~~~~~~li~~~~~~g~~~~A~ 90 (352)
+...-..+..++...|++++|.+.|.+... |+..+......+ .-..-|..++..+-+.+.++.++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 444444566677889999999999976432 222211111000 12234777888888888888888
Q ss_pred HHHHHHHHcCCCCCH--h--HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 91 EYFYEMQIRGVKPDA--I--TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 91 ~~~~~m~~~g~~p~~--~--t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
++-+...+..-+-+. . .|..+++++...|++++|...+-.+... . .-......||..+|..|..+.-
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChhhh
Confidence 877766553211111 1 4778888888899999998888777643 2 2345566777777777765543
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.89 E-value=33 Score=30.53 Aligned_cols=96 Identities=7% Similarity=-0.088 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH--
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKP--DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL-- 147 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-- 147 (352)
++..+...|.+.|++++|.+.|.++...-..+ -...+-.++..+...+++..+...+.+......-.++...-+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45678888999999999999999998753232 34567788889999999999999988876543333333322221
Q ss_pred --HHHHHHcCCHHHHHHHHHhC
Q 048142 148 --VYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 148 --i~~~~~~g~~~~A~~~~~~m 167 (352)
...+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 11233468888888877665
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.83 E-value=11 Score=25.83 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=21.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhh
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMS 132 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 132 (352)
...|++++|..+.+.+ ..||...|.+|-. .+.|..+++...+.++.
T Consensus 50 mNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 3455555555444322 3455555544332 24455555555554444
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.46 E-value=17 Score=24.97 Aligned_cols=82 Identities=13% Similarity=-0.063 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 119 GLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 119 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
...++|..+-+-+... +. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|.. .+.|..++++.-+.+
T Consensus 20 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3566777666666553 32 22221122345778899999999998887 789999866654 567777777776666
Q ss_pred HHHhCCCC
Q 048142 199 LLELLPDN 206 (352)
Q Consensus 199 ~~~~~~~~ 206 (352)
+.....|.
T Consensus 94 la~sg~p~ 101 (115)
T 2uwj_G 94 LGGSSDPA 101 (115)
T ss_dssp HHTCSSHH
T ss_pred HHhCCCHH
Confidence 65544443
No 256
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=75.32 E-value=3.3 Score=33.04 Aligned_cols=203 Identities=12% Similarity=0.047 Sum_probs=83.0
Q ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHH
Q 048142 13 LFREVQHKGLTGDKVT--MVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKAL 90 (352)
Q Consensus 13 ~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~ 90 (352)
+++.+.+.|..++... -.+.+...+..|+.+.+ +.+.+.|..++.. .+...++.| ...+..|+.+
T Consensus 24 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~-----~~~~~~t~L-~~A~~~~~~~--- 90 (240)
T 3eu9_A 24 RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQL-----GGDLNSTPL-HWATRQGHLS--- 90 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCC-----BTTTTBCHH-HHHHHHTCHH---
T ss_pred HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhh-----cCCcCCChh-HHHHHcCCHH---
Confidence 4445555665543221 11344445666776443 4444555443321 111112222 2333445543
Q ss_pred HHHHHHHHcCCCCCHh---HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHH
Q 048142 91 EYFYEMQIRGVKPDAI---TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS---IEHYGCLVYILGRAGRIAKAEELI 164 (352)
Q Consensus 91 ~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 164 (352)
+++.+.+.|..|+.. ..+. +...+..|+.+-+..++ +. |..++ ....+.+..+ +..+...+..+++
T Consensus 91 -~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll----~~-~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~~L 162 (240)
T 3eu9_A 91 -MVVQLMKYGADPSLIDGEGCSC-IHLAAQFGHTSIVAYLI----AK-GQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLL 162 (240)
T ss_dssp -HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HT-TCCTTCCCTTSCCHHHHH-HHHCCSSTTHHHH
T ss_pred -HHHHHHHcCCCCcccCCCCCCH-HHHHHHcCHHHHHHHHH----hc-CCCccccCCCCCcHHHHH-HHhCChHHHHHHH
Confidence 334444555555432 2223 33344556665443333 32 44432 2222333333 3344444555555
Q ss_pred HhCCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 165 KNMPMALDHF---VLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 165 ~~m~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
.+.+..++.. .-.+.+...+..|+.+-+..+++.-......+..-. +.+....+.|+.+-+..+++...+.+
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 5553222211 112234444566666655544443111111111111 23444456677766666655544443
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.32 E-value=18 Score=24.84 Aligned_cols=81 Identities=15% Similarity=-0.103 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 119 GLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 119 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
...++|..+-+-+... +. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|.. .+.|..++++.-+.+
T Consensus 21 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3566777666666553 32 22221122345678899999999998887 789999866654 455666666666555
Q ss_pred HHHhCCC
Q 048142 199 LLELLPD 205 (352)
Q Consensus 199 ~~~~~~~ 205 (352)
+.....|
T Consensus 95 la~sg~p 101 (116)
T 2p58_C 95 LARSQDP 101 (116)
T ss_dssp HTTCCCH
T ss_pred HHhCCCH
Confidence 5444333
No 258
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.05 E-value=12 Score=30.41 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=11.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 048142 148 VYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m 167 (352)
+..-++.|+.+-+..+++..
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~ 171 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEM 171 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHhc
Confidence 33344566666666666554
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.80 E-value=37 Score=28.08 Aligned_cols=50 Identities=18% Similarity=0.029 Sum_probs=22.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhh
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMS 132 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 132 (352)
+.|++++|++....-.+. -+-|...-..++..+|-.|+++.|..-++...
T Consensus 9 ~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444444444444444443 12233333444444444555554444444433
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.69 E-value=20 Score=27.23 Aligned_cols=57 Identities=12% Similarity=-0.047 Sum_probs=30.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHh
Q 048142 110 GVLVACSHAGLVDERISHFNLMSEKYGIRPSI-------EHYGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 110 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
.-+..+...|.++.|+-+.+.+....+..|+. .+...+.+++-..|++..|...|++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33555556666666666555544332223331 2344455666666666666666665
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.21 E-value=27 Score=25.77 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048142 23 TGDKVTMVSLLLACTHLGA---LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
.|+..+--....++.+..+ ..++..+++++.+.+.. ..-...--|.-++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~---------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS---------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc---------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 4566555555556665553 45677788887775432 1222333455677888888888888888877
Q ss_pred CCCCCH
Q 048142 100 GVKPDA 105 (352)
Q Consensus 100 g~~p~~ 105 (352)
+.|+.
T Consensus 106 -~eP~n 110 (144)
T 1y8m_A 106 -HERNN 110 (144)
T ss_dssp -TCCCC
T ss_pred -cCCCc
Confidence 56654
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.75 E-value=36 Score=26.71 Aligned_cols=56 Identities=13% Similarity=0.002 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 41 ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 41 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
....+.++|..|...|+.. .-...|-.-...+...|++++|.++|+.-.+.+-.|-
T Consensus 94 ~~~~p~~if~~L~~~~IG~--------~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGT--------KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHHTSST--------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3567777777777776653 3345567777777777777777777777777666663
No 263
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=70.01 E-value=15 Score=30.51 Aligned_cols=209 Identities=6% Similarity=-0.012 Sum_probs=105.9
Q ss_pred CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 4 DSACEEALLLFREVQHKGLT-GDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..+..+..+++.. .++. +|..-++.| ...+..|+.+.+. .+.+.|..++. ++ -+ +.+...+.
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t~L-~~A~~~g~~~~v~----~Ll~~g~~~~~------~~--g~-t~L~~A~~ 71 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHSAS-YYAIADNNVRLVC----TLLNAGALKNL------LE--NE-FPLHQAAT 71 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCCHH-HHHHHTTCHHHHH----HHHHTTGGGSC------CT--TC-CHHHHHTT
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCCHH-HHHHHcCCHHHHH----HHHhCCCCCCC------CC--CC-CHHHHHHH
Confidence 3455555555432 2322 233333333 3446678876554 44555665444 22 12 23334455
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh---hHHHHHHHHHHHcCC
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAI---TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI---EHYGCLVYILGRAGR 156 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~ 156 (352)
.|+.+-+ +.+.+.|..|+.. -++.|. ..+..|+.+-+..+++. |..++. ..+.+.+..-+..|+
T Consensus 72 ~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 72 LEDTKIV----KILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp SSSCHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred cCCHHHH----HHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCC
Confidence 6766543 4444566655532 233343 44566777655554443 444432 222345555667788
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 157 IAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 157 ~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
.+-+..+++.-....+...-.+.+...+..|+.+-+..+++.-......+..-++..+...+..|+. ++.+.+.+.
T Consensus 142 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~ 217 (285)
T 3kea_A 142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKY 217 (285)
T ss_dssp HHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTS
T ss_pred HHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHc
Confidence 8766666665432223212234455556788888877777765444333333333323333445554 455566677
Q ss_pred CCCCCCc
Q 048142 237 NIKKPPG 243 (352)
Q Consensus 237 g~~p~~~ 243 (352)
|..|+..
T Consensus 218 gad~~~~ 224 (285)
T 3kea_A 218 DINIYSA 224 (285)
T ss_dssp CBCSTTT
T ss_pred CCCCCCC
Confidence 8877644
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.05 E-value=15 Score=30.38 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=36.4
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 150 ILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
.+.+.|++++|+.-...- ..+| |...=..|+..+|-.|++++|.+-++...+..|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345667777777766543 3344 34444556777777788888777777777665543
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=68.72 E-value=97 Score=30.82 Aligned_cols=221 Identities=16% Similarity=0.072 Sum_probs=115.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHcCC--CCC--ccccccCCcHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLL--ACTHLGALEVGMWLHPYIMKKNI--EVD--VGLGMALKDVMTLTALI 77 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~--~~~~~g~~~~a~~~~~~m~~~g~--~~~--~~~~~~l~~~~~~~~li 77 (352)
.|+.++++.++..-...+-..+..+-...+- +....|..+++..++.......- ..+ . +.+..-.+|.
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~------~~ir~gAaLG 460 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDV------DVLLHGASLG 460 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHH------HHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccccc------HHHHHHHHHH
Confidence 4667777777655443211223343333333 34556665667776666554321 000 0 2223334444
Q ss_pred HHHHhcCC-hHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH--H
Q 048142 78 VVLAMCGQ-GNKALEYFYEMQIRGVKPDAITFV--GVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL--G 152 (352)
Q Consensus 78 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~--~ 152 (352)
-+++-.|. -+++.+.+..+....- +...... +|-..+...|+-+....++..+.+. . +..+...+.-++ .
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~--~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--Q--HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--S--CHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--C--cHHHHHHHHHHHHhh
Confidence 44444443 3467777777765321 1111122 2233345678888777887776653 1 222333333444 4
Q ss_pred HcCCHHHHHHHHHhCCCCCc-HHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHH
Q 048142 153 RAGRIAKAEELIKNMPMALD-HFVLG---GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKR 228 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m~~~p~-~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 228 (352)
-.|+.+.+..+++.+....+ ..-|. ++.-+|+..|+.....+++..+.+...++..-...+.-++...|+.+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 67888888888777632223 23333 233467888898777778888776433333333333334555676666666
Q ss_pred HHHHHHh
Q 048142 229 IRELMAE 235 (352)
Q Consensus 229 ~~~~m~~ 235 (352)
+++.+.+
T Consensus 616 lv~~L~~ 622 (963)
T 4ady_A 616 IVQLLSK 622 (963)
T ss_dssp HTTTGGG
T ss_pred HHHHHHh
Confidence 6665544
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.40 E-value=82 Score=29.89 Aligned_cols=209 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh-
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM- 82 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~- 82 (352)
.|+++.|++.+-+. ...|.+.+.+.+.-++-.+- -+.+...... -....+..||..|.+
T Consensus 307 tgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~---------~~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 307 SGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKP---------KRDIRFANILANYTKS 366 (661)
T ss_dssp TTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------------------CHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCC---------cccccHHHHHHHHHHH
Q ss_pred --cCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCCHHHHH-----------HHHHHhhHhcCCCCChhHHHHHH
Q 048142 83 --CGQGNKALEYFYEMQIRG-VKPDAITFVGVLVACSHAGLVDERI-----------SHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 83 --~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~-----------~~~~~m~~~~g~~p~~~~~~~li 148 (352)
..+..+|++.|--+...+ -.--...+.++-......++++.-. -++++...-.++.-.......++
T Consensus 367 F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~ 446 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTIT 446 (661)
T ss_dssp TTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHH
Q ss_pred H----HHHHcCCHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCC----------------HHHHHHHHHH-------H
Q 048142 149 Y----ILGRAGRIAKAEELIKNMPMALD--HFVLGGLLGACRIHDN----------------LEAAERAAQQ-------L 199 (352)
Q Consensus 149 ~----~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~~~~~~g~----------------~~~a~~~~~~-------~ 199 (352)
. -+...|++++|..+|.-.+ .+| ....|.+++-....-. ...|.++.+. -
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~ 525 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGIS 525 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhh
Q ss_pred HHhCCCCcchHHHHHHH-----HhhcCChHHHHHHHHHH
Q 048142 200 LELLPDNGGSYVILSNR-----YSSSRKWKKVKRIRELM 233 (352)
Q Consensus 200 ~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m 233 (352)
.+..+.+..|+..|++. +...|++++|.+.++++
T Consensus 526 ~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 526 RQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.25 E-value=28 Score=25.70 Aligned_cols=52 Identities=8% Similarity=0.210 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKN 56 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 56 (352)
.+..+++.+++++.+.+..-......-|.-++.+.|+++.|++..+.+.+..
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3457889999999886432234445567778999999999999999999854
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.14 E-value=66 Score=27.57 Aligned_cols=191 Identities=12% Similarity=0.033 Sum_probs=110.0
Q ss_pred CChhHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 5 SACEEALLLFREVQHKGLT---G-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~---p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
++.++-+.-|+.-...|-- - -..+|-++..-|.+.+++++|.+++-.-. ..+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA------------------------~~l 65 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS------------------------QTL 65 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH------------------------HHH
Confidence 3445555556665666621 1 23567788888889999999988754321 122
Q ss_pred HhcCChHHHHHHH----HHHHHcCCCCCHhHHHHHHHHHhccCCHH-HHHHHHHHhhH---hcCC--CCChhHHHHHHHH
Q 048142 81 AMCGQGNKALEYF----YEMQIRGVKPDAITFVGVLVACSHAGLVD-ERISHFNLMSE---KYGI--RPSIEHYGCLVYI 150 (352)
Q Consensus 81 ~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~m~~---~~g~--~p~~~~~~~li~~ 150 (352)
.+.|+...|-++- +-..+.++++|..+..-|+..+.....-+ .=..+.+++.+ +.|- .-|+.....+...
T Consensus 66 l~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~ 145 (336)
T 3lpz_A 66 LRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTL 145 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 3445555444443 44455677888777777777776654311 11112222221 1232 2377888889999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 151 LGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
|.+.+++.+|...|= .+..+++..+..++.-+...+...++-- .....+--|.-.+++..|..++
T Consensus 146 ~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~dl--------------fiaRaVL~yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 146 YVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTAPL--------------YCARAVLPYLLVANVRAANTAY 210 (336)
T ss_dssp HHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGHHH--------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccHHH--------------HHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999983 4545555777666655544433221111 1122233355667788887776
Q ss_pred HHHH
Q 048142 231 ELMA 234 (352)
Q Consensus 231 ~~m~ 234 (352)
+...
T Consensus 211 ~~f~ 214 (336)
T 3lpz_A 211 RIFT 214 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.88 E-value=38 Score=24.65 Aligned_cols=70 Identities=6% Similarity=-0.075 Sum_probs=34.9
Q ss_pred CCCHhHHHHHHHHHhccCC---HHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc
Q 048142 102 KPDAITFVGVLVACSHAGL---VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD 172 (352)
Q Consensus 102 ~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 172 (352)
.|+..|-.....++.+... ..+++.++++..+. +-.-.....--|.-++.+.|++++|.+..+.+ ...|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3444443334444444433 34566666666654 31112333334455666666666666666665 44454
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.51 E-value=78 Score=27.83 Aligned_cols=168 Identities=10% Similarity=-0.026 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccccccCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKK-NIEVDVGLGMALKDVMTLTALIVVLAMC-GQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~ 104 (352)
.....|...|.+.|+.++..+++...... +.-+.. ...-.-..||..+... +..+.-+++..+..+.- +-+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka------k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~ 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA------KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQE 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH------HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHH
Confidence 45667888899999999888887766432 111111 4445567888888764 44555556665555421 112
Q ss_pred HhHH------HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-----CC
Q 048142 105 AITF------VGVLVACSHAGLVDERISHFNLMSEKYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNM-----PM 169 (352)
Q Consensus 105 ~~t~------~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~ 169 (352)
..+| .-+...|...|++.+|..++.++.+...-..| ..+|-.-+..|...+++.++...+... .+
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 2344 15788899999999999999998875322112 345666778888999999999888765 12
Q ss_pred CCcHHHHHH--HHH--HHH-hcCCHHHHHHHHHHHHH
Q 048142 170 ALDHFVLGG--LLG--ACR-IHDNLEAAERAAQQLLE 201 (352)
Q Consensus 170 ~p~~~~~~~--li~--~~~-~~g~~~~a~~~~~~~~~ 201 (352)
.|++.+-.. ..+ .+. ..+++..|...|-+..+
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 233322211 112 345 68899999888877654
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.32 E-value=41 Score=25.44 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh
Q 048142 88 KALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI 141 (352)
Q Consensus 88 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 141 (352)
++.++|..|...|+--. +.-|......+-..|++.+|.++|..=.+. +-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 46677888877776554 334666666667778888888888777775 666643
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.03 E-value=15 Score=29.78 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=25.2
Q ss_pred HHHHHhcCCHHHHHHHHHHH-HHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 048142 180 LGACRIHDNLEAAERAAQQL-LELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPP 242 (352)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 242 (352)
+...+..|+.+-+..+++.. ......|..-.+. +..-++.|+.+ +.+.+.+.|..|+.
T Consensus 223 L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~-l~~A~~~~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA-LLLAVELKLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHHSSCSCC
T ss_pred HHHHHHcCCHHHHHHHHhccCCCccccCCCCCcH-HHHHHHcCcHH----HHHHHHHcCCCCCc
Confidence 34445567766555554421 1111122222222 23333445543 44455566776653
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.78 E-value=67 Score=25.21 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 187 DNLEAAERAAQQLLE--LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 187 g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
++...+..+|..|.. .+..-+..|......+...|++.+|.++|+.=.+++-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335667777777654 244455567777777777777777777777777777666
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.39 E-value=1.1e+02 Score=27.17 Aligned_cols=102 Identities=8% Similarity=-0.045 Sum_probs=72.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR---GVKPD 104 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 104 (352)
++..+..-+.+.|+++.|.+.+.++...-..+. .-+..|-.+|..+...+++..|...+++.... +-.|+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHH
Confidence 566788889999999999999999987533321 34567888999999999999999999988643 32333
Q ss_pred HhHH--HHHHHHHhccCCHHHHHHHHHHhhHhcC
Q 048142 105 AITF--VGVLVACSHAGLVDERISHFNLMSEKYG 136 (352)
Q Consensus 105 ~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~g 136 (352)
...- ..-...+...+++.+|-..|-+....+.
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2211 1112223457899999888888766533
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.37 E-value=99 Score=26.15 Aligned_cols=188 Identities=11% Similarity=-0.032 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC
Q 048142 7 CEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ 85 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~ 85 (352)
+++.+.-++.-...|--- -..+|-++..-|.+.+++++|.+++..-. ..+.+.|+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga------------------------~~ll~~~Q 68 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA------------------------LSFLKAKQ 68 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTC
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------------HHHHHCCC
Confidence 444444455545544211 23466777777777888888777654321 12234455
Q ss_pred hHHHHHH----HHHHHHcCCCCCHhHHHHHHHHHhccCC-----HHHHHHHHHHhhHhcCC--CCChhHHHHHHHHHHHc
Q 048142 86 GNKALEY----FYEMQIRGVKPDAITFVGVLVACSHAGL-----VDERISHFNLMSEKYGI--RPSIEHYGCLVYILGRA 154 (352)
Q Consensus 86 ~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~ 154 (352)
...|-++ .+-..+.+.++|..+..-++..+..... .+-..+....-.+. |- .-++..+..+...|.+.
T Consensus 69 ~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e 147 (312)
T 2wpv_A 69 GGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEG 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhc
Confidence 5555443 3444456778887777777766655321 11112222222221 22 23778888999999999
Q ss_pred CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 155 GRIAKAEELIKNMPMALDHFVLGGLLGACRIH---DNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 155 g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
|++.+|...|- .+..-|...+..++--+... |...++.-..- ..+-.|.-.|+...|..+++
T Consensus 148 ~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 148 DFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp TCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHH
T ss_pred CCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHH
Confidence 99999999875 33222466666666555444 54444322211 12223456788888888887
Q ss_pred HHH
Q 048142 232 LMA 234 (352)
Q Consensus 232 ~m~ 234 (352)
...
T Consensus 213 ~f~ 215 (312)
T 2wpv_A 213 IFL 215 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.71 E-value=66 Score=23.93 Aligned_cols=50 Identities=8% Similarity=0.075 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC
Q 048142 89 ALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP 139 (352)
Q Consensus 89 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p 139 (352)
+.++|..|...|+--. +.-|..-...+-..|++.+|.++|+.=.++ +-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 5666666666655443 333555555555666666666666665554 5555
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.35 E-value=41 Score=30.79 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH--hHHH-HHHHHHhccCCHHHHHHHHHHhhHhcCCCCChh--
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDA--ITFV-GVLVACSHAGLVDERISHFNLMSEKYGIRPSIE-- 142 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~--~t~~-~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-- 142 (352)
....+|.++..|...+.++.|..+..+..--- ..+|. .+|. -+-..+.-.+++.+|.+.+....+. .+++..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk--ap~~~~a~ 307 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK--APHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS--CSCSSSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcchhhh
Confidence 34679999999999999999999999874210 01121 2222 2334455678999999988887653 222211
Q ss_pred -----H--HHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 143 -----H--YGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 143 -----~--~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
. |..++..+ .|++.+ ..+|..-..+.....|..|..++ +.|+++.-...++.
T Consensus 308 gfr~~a~K~lI~V~LL--lG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 308 GFLQQSNKLHCCIQLL--MGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHHH--HTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHhh--cCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 1 22333333 355443 33343322222234466666554 55666655444443
No 278
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=51.27 E-value=38 Score=25.92 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=77.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDK-VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
+.|+++....++. .++.... ..=.+.+...+..|+.+.-.++.+.+++.|..++. +|..-++.|..+..
T Consensus 15 ~~g~~~~~~~l~~----~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~------~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 15 MLGTYEDFLELFE----KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS------RTKEGTTLFFPLFQ 84 (186)
T ss_dssp HHSCHHHHHHHHH----HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC------CCTTCCCTHHHHHH
T ss_pred HcCCHHHHHHHHh----cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHH
Confidence 4577777555543 3433222 22224455556778877777888889999988887 55555666655444
Q ss_pred h-cCChHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHhccCCH-HHHHHHHHHhhHhcCCCCC
Q 048142 82 M-CGQGNKALEYFYEMQIRGVKPDAIT---FVGVLVACSHAGLV-DERISHFNLMSEKYGIRPS 140 (352)
Q Consensus 82 ~-~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~-~~a~~~~~~m~~~~g~~p~ 140 (352)
. ..+.....++.+.+.+.|..++... .++.+...+..+.. ..-..+++.+.+..|..++
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 3 5667777888888889998776543 21334333444433 3344566666651377664
No 279
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.58 E-value=24 Score=30.19 Aligned_cols=156 Identities=13% Similarity=0.024 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
..|..-++.|..+ +..|+.+.+.. +.+.|..++. .|..-++.|.. .+..|+.+- .+.+.+.|..
T Consensus 15 ~~d~~g~t~L~~A-a~~g~~~~v~~----Ll~~g~~~~~------~d~~g~t~L~~-A~~~g~~~~----v~~Ll~~g~~ 78 (364)
T 3ljn_A 15 KSDDENMEKIHVA-ARKGQTDEVRR----LIETGVSPTI------QNRFGCTALHL-ACKFGCVDT----AKYLASVGEV 78 (364)
T ss_dssp -CCHHHHHHHHHH-HHHTCHHHHHH----HHHTTCCTTC------CCTTCCCHHHH-HHHHCCHHH----HHHHHHHCCC
T ss_pred ccCCCCCCHHHHH-HHcCCHHHHHH----HHHcCCCccc------cCCCCCcHHHH-HHHcCCHHH----HHHHHHCCCC
Confidence 3455555555555 67788765544 4456766555 34333444433 344566543 3344445555
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh--------------------hHHHHHHHHHHHcC--CHHHH
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI--------------------EHYGCLVYILGRAG--RIAKA 160 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--------------------~~~~~li~~~~~~g--~~~~A 160 (352)
++...-.+.+...+..|+.+-+..+++.-... |..++. ...+. +..-+..| +.+-+
T Consensus 79 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v 156 (364)
T 3ljn_A 79 HSLWHGQKPIHLAVMANKTDLVVALVEGAKER-GQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMI 156 (364)
T ss_dssp CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHH-TCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHhcccc-CCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHH
Confidence 44422223344455678888877777765443 444332 11223 33445566 56655
Q ss_pred HHHHHhCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 161 EELIKNMPMALD---HFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 161 ~~~~~~m~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
..+++. +..++ ..-++ .+...+..|+.+-+..+++.
T Consensus 157 ~~Ll~~-ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 157 KILVQL-GASPTAKDKADET-PLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHH-TCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHc-CCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhc
Confidence 555554 32222 22222 33344566777766665554
No 280
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=49.66 E-value=84 Score=23.95 Aligned_cols=118 Identities=8% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 048142 43 EVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD 122 (352)
Q Consensus 43 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 122 (352)
+....+++.+.+.|+. .|...-...+....+.|.+ ....+-.++...|+.++... ..+..+......+
T Consensus 50 ~~ie~vl~~L~~~g~l---------dD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~~I~--~al~~~~~~de~e 117 (177)
T 3e3v_A 50 DYISEIINKLIDLDLI---------NDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDNIAE--DALILYTDKLQVE 117 (177)
T ss_dssp HHHHHHHHHHHHTTSS---------CHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHHHHH--HHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHHHHH--HHHHhCCchhHHH
Confidence 4455667777777765 3333334445555444332 33455666777777544321 2222111112233
Q ss_pred HHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC-HHHHHHHHHhCCCCCc
Q 048142 123 ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR-IAKAEELIKNMPMALD 172 (352)
Q Consensus 123 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~p~ 172 (352)
.|..+.+.-...+.-.++.....-++..+.+.|- ++.+..+++.+...||
T Consensus 118 ~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 118 KGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 4444444432221212223334455666666663 4445555555533333
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.23 E-value=1.7e+02 Score=27.43 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048142 182 ACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 182 ~~~~~g~~~~a~~~~~~~~ 200 (352)
++...|+.++|..+|+.+.
T Consensus 328 a~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 328 LLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 3344455555555555543
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.22 E-value=62 Score=25.85 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh
Q 048142 86 GNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI 141 (352)
Q Consensus 86 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 141 (352)
.+++.++|..|...|+--. +.-|......+-..|++.+|..+|+.=.++ +-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 3577889999999887655 445777788888899999999999988886 777743
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.99 E-value=64 Score=23.11 Aligned_cols=67 Identities=7% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC--HHHHHHHHHHhhHhcCCCCC
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL--VDERISHFNLMSEKYGIRPS 140 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~g~~p~ 140 (352)
..+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+.+. |+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~-~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCH
Confidence 3567889999999999999999998632111 23344455556655432 45667777777665 54443
No 284
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=48.81 E-value=33 Score=26.26 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=55.5
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH---HHHHH
Q 048142 36 CTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT---FVGVL 112 (352)
Q Consensus 36 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll 112 (352)
.++.|+++....++. .+.. . .+...-.+.+...+..|+.+.-.++.+-+.+.|..|+... .+.|.
T Consensus 13 Aa~~g~~~~~~~l~~----~~~~--~------~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 13 AAMLGTYEDFLELFE----KGYE--D------KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFF 80 (186)
T ss_dssp HHHHSCHHHHHHHHH----HSSS--C------HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHH
T ss_pred HHHcCCHHHHHHHHh----cCcc--c------ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 367899887655553 3432 1 2212223344555667888877888888888998877543 34444
Q ss_pred HHHhc-cCCHHHHHHHHHHhhHhcCCCCCh
Q 048142 113 VACSH-AGLVDERISHFNLMSEKYGIRPSI 141 (352)
Q Consensus 113 ~~~~~-~g~~~~a~~~~~~m~~~~g~~p~~ 141 (352)
.++.. ..+.....++.+.+.+. |..++.
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~ 109 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEK-GADITA 109 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHT-TCCSSS
T ss_pred HHHHcCCcchhhHHHHHHHHHHC-CCCCCc
Confidence 33332 33445556677777775 877754
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.74 E-value=15 Score=30.41 Aligned_cols=134 Identities=10% Similarity=-0.033 Sum_probs=69.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHH
Q 048142 13 LFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEY 92 (352)
Q Consensus 13 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~ 92 (352)
+++.+.+.|..++...-.+.+...+..|+.+-+ +.+.+.|..++. +|..-++.|..+ +..|+.+-+.-
T Consensus 46 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~------~d~~g~t~L~~A-~~~g~~~~v~~- 113 (285)
T 3kea_A 46 LVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQ------FDDKGNTALYYA-VDSGNMQTVKL- 113 (285)
T ss_dssp HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTC------CCTTSCCHHHHH-HHTTCHHHHHH-
T ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCC------cCCCCCcHHHHH-HHcCCHHHHHH-
Confidence 445555666555433222344455677886644 455566777655 443334444433 45666654433
Q ss_pred HHHHHHcCCCCCHhH---HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 048142 93 FYEMQIRGVKPDAIT---FVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 93 ~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
+.+.|..|+... +.+.+...+..|..+-+..++ +. |..+ +...-.+.+..-+..|+.+-+.-+++.
T Consensus 114 ---Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~-g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 114 ---FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SE-IPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp ---HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TT-SCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hC-CCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 334455554332 234455556677776554443 32 4333 221333445555678888877666654
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.38 E-value=36 Score=25.90 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=74.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh---hHHHHHHHHHHHcCC
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI---EHYGCLVYILGRAGR 156 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~ 156 (352)
.+..|+.+....++..-...--.+|..-++.|. ..+..|+.+-+..++ +. |..++. ...+ .+..-+..|+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll----~~-g~~~~~~~~~g~t-~l~~A~~~~~ 84 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIEIAKALI----DR-GADINLQNSISDS-PYLYAGAQGR 84 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCHHHHHHHH----HT-TCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHH----Hc-CCCCCCCCCCCCC-HHHHHHHcCC
Confidence 356777777766664321000112222233443 445567765544443 43 555532 2222 3444556788
Q ss_pred HHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCcchHHHHHHHHhhcCC-hHHHHHHHH
Q 048142 157 IAKAEELIKNMPMAL---DHFVLGGLLGACRIHDNLEAAERAAQQL-LELLPDNGGSYVILSNRYSSSRK-WKKVKRIRE 231 (352)
Q Consensus 157 ~~~A~~~~~~m~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~ 231 (352)
.+-+..+++.-+..+ |.... +.+...+..|+.+.+..+++.- ......+..-.+.|..+. ..++ ...-.++.+
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHHHH
Confidence 888888886653221 21111 2233445567776655555443 112222333333444443 3343 333456777
Q ss_pred HHHhcCCCCC
Q 048142 232 LMAERNIKKP 241 (352)
Q Consensus 232 ~m~~~g~~p~ 241 (352)
.+.+.|..++
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 7778887765
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.31 E-value=75 Score=25.60 Aligned_cols=29 Identities=0% Similarity=-0.359 Sum_probs=18.1
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 206 NGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.+..-...+..+.+.|+-++|.++|=+.+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34445555666677777777777665544
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.23 E-value=70 Score=22.91 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=48.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCH
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ--GNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 105 (352)
....++.-|...|+.++|.+-++++....+ ........+..++-+.++ .+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f----------~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF----------HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG----------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356789999999999999999988853222 334556667777776542 46778888888877655443
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.35 E-value=48 Score=25.98 Aligned_cols=155 Identities=10% Similarity=-0.062 Sum_probs=78.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhH--HHHHHHHHH
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKPDAIT--FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEH--YGCLVYILG 152 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~--~~~li~~~~ 152 (352)
+...++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+-+..+ .+. |..++... -.+.+..-+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~-g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL----VTA-GASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH----HHT-TCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHH----HHc-CCCccccCCCCCCHHHHHH
Confidence 4445678898888888887777776655332 11234445567777654443 343 65553221 123344456
Q ss_pred HcCCHHHHHHHHHhCC---CC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHH
Q 048142 153 RAGRIAKAEELIKNMP---MA---LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKV 226 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m~---~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 226 (352)
..|+.+-...+++... .. .+...++. +...+..|+.+-...+++.-......+...-.+.+...+..|+.+-+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 7888888777777642 11 12222222 33334556665554444432111111211122334444566776544
Q ss_pred HHHHHHHHhcCCCCC
Q 048142 227 KRIRELMAERNIKKP 241 (352)
Q Consensus 227 ~~~~~~m~~~g~~p~ 241 (352)
. .+.+.|..++
T Consensus 167 ~----~Ll~~g~~~~ 177 (241)
T 1k1a_A 167 Q----LLLQHGANVN 177 (241)
T ss_dssp H----HHHHTTCCTT
T ss_pred H----HHHHcCCCCC
Confidence 4 4445676655
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.94 E-value=26 Score=26.16 Aligned_cols=25 Identities=24% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNMP 168 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m~ 168 (352)
.+.++.-|...|+.++|.+.+++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666767777777777777764
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.59 E-value=91 Score=23.10 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ--GNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 104 (352)
....+|.-|...|+.++|.+-++++....+ .....+.++..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f----------~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF----------HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG----------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc----------hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 346678888888888888888887753222 233455666666665422 4556777777776655433
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.66 E-value=2.3e+02 Score=28.26 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 048142 146 CLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m 167 (352)
.+..+|...|++++|.++|++.
T Consensus 845 v~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4555566677777777777765
No 293
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.84 E-value=1.5e+02 Score=24.99 Aligned_cols=138 Identities=13% Similarity=-0.002 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHH----HHHHHHhhHhcCCCCChhHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDER----ISHFNLMSEKYGIRPSIEHYGC 146 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a----~~~~~~m~~~~g~~p~~~~~~~ 146 (352)
..|.++..=|.+.+++++|++++..-.. .+.+.|+...| .-+.+...+. +++++......
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~-~~~~~~~~~~r 97 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLA-EVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHT-TCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 3677888888899999999998765322 22233444333 2334444443 77777777777
Q ss_pred HHHHHHHcCC--------HHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 048142 147 LVYILGRAGR--------IAKAEELIKNMP--MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNR 216 (352)
Q Consensus 147 li~~~~~~g~--------~~~A~~~~~~m~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 216 (352)
++..+..... +++|...-.+.+ ..-|+.....+...|...|++.+|+..|-.- ...++..+..++--
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHH
Confidence 7777665432 222333333332 1246777777888889999998887765411 11134455555555
Q ss_pred Hhhc---CChHHHH
Q 048142 217 YSSS---RKWKKVK 227 (352)
Q Consensus 217 ~~~~---g~~~~a~ 227 (352)
+... |...++-
T Consensus 175 w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 175 WLCQVDDIEDSTVA 188 (312)
T ss_dssp HHHHTTCCCHHHHH
T ss_pred HHHhcCCCCcchHH
Confidence 4444 6555543
No 294
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=41.61 E-value=1.7e+02 Score=25.07 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH----HHHHHHHhhHhcCCCCChhHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDE----RISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.|.++..=|.+.+++++|++++..--. .+.+.|...- +.-+.+...+. ++++|......|
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 566777778899999999998765321 2223344433 33334444444 778887777777
Q ss_pred HHHHHHcCCHH-HHHHHHHhC-------C--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 148 VYILGRAGRIA-KAEELIKNM-------P--MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 148 i~~~~~~g~~~-~A~~~~~~m-------~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
+..+.....-+ +=..+.+++ + -.-|+.....+...|.+.+++.+|+.-|= . +..+.+..|..++--+
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T-SCTTHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h-cCCchHHHHHHHHHHH
Confidence 77776655422 112222222 2 12356666667778888888888877762 1 2222235665555555
Q ss_pred hhcCChH
Q 048142 218 SSSRKWK 224 (352)
Q Consensus 218 ~~~g~~~ 224 (352)
...+...
T Consensus 178 ~~~~~~~ 184 (336)
T 3lpz_A 178 YKQDESH 184 (336)
T ss_dssp HHTSCGG
T ss_pred HHhcCCc
Confidence 4444333
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.25 E-value=1e+02 Score=24.44 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhHhcCCCCCh-hHH-----HHHHHHHHHcCCHHHHHHHHHhC-CCCCcH
Q 048142 121 VDERISHFNLMSEKYGIRPSI-EHY-----GCLVYILGRAGRIAKAEELIKNM-PMALDH 173 (352)
Q Consensus 121 ~~~a~~~~~~m~~~~g~~p~~-~~~-----~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 173 (352)
++.|..+++.+.+...+.... ..- -..+..|.+.|.+++|.+++++. +..++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 466777787777752221111 111 12345678899999999999887 433333
No 296
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.09 E-value=34 Score=26.74 Aligned_cols=9 Identities=22% Similarity=0.036 Sum_probs=3.5
Q ss_pred ccCChHHHH
Q 048142 38 HLGALEVGM 46 (352)
Q Consensus 38 ~~g~~~~a~ 46 (352)
+.|+++...
T Consensus 15 ~~g~~~~v~ 23 (231)
T 3aji_A 15 YSGKLDELK 23 (231)
T ss_dssp HHTCHHHHH
T ss_pred HhCCHHHHH
Confidence 334443333
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.34 E-value=56 Score=24.61 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=40.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H---H--hccCChHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTG--DKVTMVSLLL-A---C--THLGALEVGMWLHPYIMK 54 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~-~---~--~~~g~~~~a~~~~~~m~~ 54 (352)
..|++-+|-++|++.....-.| ....|..||. . + .+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4689999999999999876566 5566777777 2 2 457999999999998876
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=39.07 E-value=2e+02 Score=25.22 Aligned_cols=212 Identities=14% Similarity=0.029 Sum_probs=123.2
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCCccccccCCcHHHH-
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD-----KVTMVSLLLACTHLGALEVGMWLHPYIMKK--NIEVDVGLGMALKDVMTL- 73 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~l~~~~~~- 73 (352)
...|++.+|++++.++.+.=-..| ...|...+..|...+++.++...+...... .+.++ |.....
T Consensus 110 ~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~-------p~i~a~i 182 (394)
T 3txn_A 110 FDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-------PKVQGAL 182 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-------HHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC-------HHHHHHH
Confidence 467999999999999987422222 234666777888999999999999887653 22111 222221
Q ss_pred -HHHHHHHH-hcCChHHHHHHHHHHHHcC--C-CC---CHhHHHHHHHHHhccCCHHHHHHHH-HHhhHhcCCCCChhHH
Q 048142 74 -TALIVVLA-MCGQGNKALEYFYEMQIRG--V-KP---DAITFVGVLVACSHAGLVDERISHF-NLMSEKYGIRPSIEHY 144 (352)
Q Consensus 74 -~~li~~~~-~~g~~~~A~~~~~~m~~~g--~-~p---~~~t~~~ll~~~~~~g~~~~a~~~~-~~m~~~~g~~p~~~~~ 144 (352)
-.-.-.+. ..+++.+|...|-+..+.= . .| +...|..|..... . +..+...++ ......+ ..|....+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~-~r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-G-QSDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-T-CGGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-C-CHHHHHHHhcccccccc-CCccHHHH
Confidence 11223345 6899999999888764320 1 11 1223433333322 2 222222222 1211222 34566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCCCCcchHHHHHHH
Q 048142 145 GCLVYILGRAGRIAKAEELIKNMP--MALDHFVLGGLLGACRIHDNLEAAERAAQQLLE------LLPDNGGSYVILSNR 216 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~li~~ 216 (352)
..++.+|. .+++.+...+++... +..|..... ....+++.+.. ..|-...+...+...
T Consensus 260 ~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~-------------h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 260 KSVAEASH-KRSLADFQAALKEYKKELAEDVIVQA-------------HLGTLYDTMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHH-------------HHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHH-------------HHHHHHHHHHHHHHHHHhHhhceeeHHHHHHH
Confidence 66776654 568888888877762 344554211 11223333222 256677788888777
Q ss_pred HhhcCChHHHHHHHHHHHhcCCC
Q 048142 217 YSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 217 ~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
+.- ..+++...+.+|...|.-
T Consensus 326 l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTTSS
T ss_pred HCc--CHHHHHHHHHHHHHCCCe
Confidence 754 788999999999988774
No 299
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=38.75 E-value=1.5e+02 Score=24.53 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---HHH
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI---TFV 109 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~ 109 (352)
+...+..|+.+-+ +.+.+.|..++. +|..-++.|..+ +..|+.+ +++.+.+.|..++.. .++
T Consensus 62 L~~A~~~g~~~~v----~~Ll~~g~~~~~------~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t 126 (351)
T 3utm_A 62 LHLAAGYNRVRIV----QLLLQHGADVHA------KDKGGLVPLHNA-CSYGHYE----VTELLLKHGACVNAMDLWQFT 126 (351)
T ss_dssp HHHHHHTTCHHHH----HHHHHTTCCTTC------CCTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHHHcCCHHHH----HHHHHcCCCCCc------cCCCCCcHHHHH-HHCCCHH----HHHHHHHCCCCCCCCCCCCCC
Confidence 4444566776544 444556666554 333333333333 3455543 444444556555432 223
Q ss_pred HHHHHHhccCCHHHHHHHH
Q 048142 110 GVLVACSHAGLVDERISHF 128 (352)
Q Consensus 110 ~ll~~~~~~g~~~~a~~~~ 128 (352)
.| ...+..|+.+-+..++
T Consensus 127 ~L-~~A~~~~~~~~v~~Ll 144 (351)
T 3utm_A 127 PL-HEAASKNRVEVCSLLL 144 (351)
T ss_dssp HH-HHHHHTTCHHHHHHHH
T ss_pred HH-HHHHHcCCHHHHHHHH
Confidence 33 3334566665544443
No 300
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.56 E-value=43 Score=26.28 Aligned_cols=21 Identities=5% Similarity=-0.002 Sum_probs=12.2
Q ss_pred HHHhhcCChHHHHHHHHHHHh
Q 048142 215 NRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~m~~ 235 (352)
...+..|+.+.+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344455666666666666554
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.21 E-value=1.3e+02 Score=24.08 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=31.5
Q ss_pred HHHHHHHHHHH--hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 191 AAERAAQQLLE--LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 191 ~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
.+..+|..|.. .+..-+..|......+...|++.+|.++|+.=.+++-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566666654 234445566666666777777777777777666666665
No 302
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.18 E-value=51 Score=28.93 Aligned_cols=45 Identities=13% Similarity=0.326 Sum_probs=21.7
Q ss_pred HHHHHHHHCCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 048142 12 LLFREVQHKGLTGDKVT--MVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60 (352)
Q Consensus 12 ~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 60 (352)
++++.+.+.|..|+... ..+.+...+..|+.+-+.. +.+.|...+
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~ 74 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVN 74 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSS
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCC
Confidence 34555556666654321 1233444456677654433 344455433
No 303
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.03 E-value=1.3e+02 Score=22.29 Aligned_cols=49 Identities=4% Similarity=0.036 Sum_probs=35.7
Q ss_pred HHHHHHHHHH--hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 192 AERAAQQLLE--LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 192 a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
+.++|..|.. .+..-+..|......+...|++.+|.++|+.=.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777754 244555667777777888888888888888777777776
No 304
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.05 E-value=32 Score=24.92 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=10.1
Q ss_pred HHhccCChHHHHHHHHH
Q 048142 35 ACTHLGALEVGMWLHPY 51 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~ 51 (352)
..++.|+.+....+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34566776666665554
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.00 E-value=1.6e+02 Score=23.01 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=27.5
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 048142 76 LIVVLA---MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHA 118 (352)
Q Consensus 76 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 118 (352)
+|+++. +..+.+.|+-.+-+|.+.| .|....-..++.+.-..
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDI 61 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDI 61 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Confidence 455554 3577888888888888888 66655555555554333
No 306
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.79 E-value=68 Score=22.71 Aligned_cols=43 Identities=14% Similarity=0.008 Sum_probs=30.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048142 13 LFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK 55 (352)
Q Consensus 13 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 55 (352)
+|+.+....+.|+...--.-|..+...++++.|..++-.+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555566666666555455555668899999999999988763
No 307
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=34.07 E-value=1.9e+02 Score=23.89 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=58.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI- 106 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 106 (352)
..+.|+.+ ++.|+.+....++.. .+..++. +|..-++. +...+..|+.+ +++.+.+.|..++..
T Consensus 24 ~~~~L~~A-~~~g~~~~v~~ll~~---~~~~~~~------~d~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~ 88 (351)
T 3utm_A 24 KKDELLEA-ARSGNEEKLMALLTP---LNVNCHA------SDGRKSTP-LHLAAGYNRVR----IVQLLLQHGADVHAKD 88 (351)
T ss_dssp HHHHHHHH-HHHTCHHHHHHHCCT---TTTTCCC------SSTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCC
T ss_pred cchhHHHH-HHcCCHHHHHHHHHh---cCCCccc------CCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCccC
Confidence 33445544 688898877776643 3333332 22222233 33344567654 444445566655433
Q ss_pred --HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHh
Q 048142 107 --TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI---EHYGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 107 --t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
.++.|. ..+..|+.+-+..++ +. |..++. ..++ .+..-+..|+.+-+..+++.
T Consensus 89 ~~g~t~L~-~A~~~g~~~iv~~Ll----~~-g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 146 (351)
T 3utm_A 89 KGGLVPLH-NACSYGHYEVTELLL----KH-GACVNAMDLWQFT-PLHEAASKNRVEVCSLLLSH 146 (351)
T ss_dssp TTCCCHHH-HHHHTTCHHHHHHHH----HT-TCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcHHH-HHHHCCCHHHHHHHH----HC-CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 233343 445567766544443 33 554432 2222 33444567777766666654
No 308
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=32.86 E-value=99 Score=26.31 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHcC-----CCCCHh---HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 85 QGNKALEYFYEMQIRG-----VKPDAI---TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g-----~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
+-++|.-+|..+...- ..|+.. .+...+..+.+.-++ ++++.+.+. |+.|...++.-++..+.+.=.
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~-~i~~~~~~~~W~ltlF~~~lp 243 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKN-NLTPDIYLIDWIFTLYSKSLP 243 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHT-TCCGGGTHHHHHHTTTTTTSC
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHc-CCCccchHHHHHHHHhcccCC
Confidence 5678888888776431 223322 222233333332222 345555554 888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 048142 157 IAKAEELIKNM 167 (352)
Q Consensus 157 ~~~A~~~~~~m 167 (352)
++.+.++|+.+
T Consensus 244 ~~~~lriWD~~ 254 (334)
T 2qq8_A 244 LDLACRIWDVF 254 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88899988877
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.71 E-value=1.4e+02 Score=21.63 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=8.4
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 048142 148 VYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m 167 (352)
+..+...+..-.|.++++.+
T Consensus 28 l~~L~~~~~~~sa~ei~~~l 47 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKAL 47 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHH
Confidence 33333333333444444444
No 310
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=32.70 E-value=3.9e+02 Score=26.68 Aligned_cols=176 Identities=9% Similarity=0.022 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHH--HHH--HHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 8 EEALLLFREVQHKGLTGDKVT--MVS--LLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t--~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
+++.+.+..+.... +..+ ... |--.+.-.|+-+....++..+.+.. . -++.-.-++.-++.-.
T Consensus 471 eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~---------e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 471 IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-H---------GNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-C---------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-c---------HHHHHHHHHHHHhhhC
Confidence 45566666665532 2221 111 2222345577777777777766532 1 2233334444555578
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHH---HHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKPDAITFV---GVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
|+.+.+..+.+.+... ..| ..-|. ++.-+|+..|+......+++.+... ...++.-...+.-++...|+.+.+
T Consensus 538 g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHH
Confidence 9999999998888764 122 22343 3445778899988888899888763 223333332333344446776667
Q ss_pred HHHHHhC--CCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 048142 161 EELIKNM--PMALDHFVLGGLLGACRIHDNL-EAAERAAQQLL 200 (352)
Q Consensus 161 ~~~~~~m--~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~ 200 (352)
.++++.+ ...|.+.--..+.-+....|+. .++..++..+.
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7777655 2234443333344444444443 45666666664
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.41 E-value=36 Score=20.70 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 048142 87 NKALEYFYEMQIRGVKPDAITFVGVLVAC 115 (352)
Q Consensus 87 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 115 (352)
++|.+.|.+|++..-.+..-||.-.+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 57777777776544334446777777776
No 312
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.30 E-value=1.8e+02 Score=22.70 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 048142 75 ALIVVLA---MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVAC 115 (352)
Q Consensus 75 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 115 (352)
.+|+++. +..+.+.|+-.+-+|.+.|-.|....-..++.+.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3556664 4578999999999999998887776666666554
No 313
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.62 E-value=3.3e+02 Score=25.53 Aligned_cols=137 Identities=9% Similarity=-0.093 Sum_probs=76.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+.|+++.+..+...+...-+. ....|..+..... ....++...++.+-. +.......-+.-+..+.+.+++....
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~-~~~~~ev~~Fl~~~~---~~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLM-NQPAVTVTNFVRANP---TLPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGG-GCCHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcc-cCCHHHHHHHHHHCC---CChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 457777777666655432221 2234544443332 224444444443332 22223344455667777788888777
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHH
Q 048142 162 ELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225 (352)
Q Consensus 162 ~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 225 (352)
.++.. + ..+...-.....+....|+..+|....+.+--.....+..+..|+..+.+.|.+..
T Consensus 93 ~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 93 AFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 76655 2 22444444566677777887777776666655444555677777777766665433
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.54 E-value=1.3e+02 Score=23.73 Aligned_cols=196 Identities=12% Similarity=-0.043 Sum_probs=98.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC---------C
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA--MCGQGNKALEYFYEMQIRG---------V 101 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g---------~ 101 (352)
+...++.|+.+....+++.+.+.|...+..... .+..-++.|..+.. +.|+.+-+..+++.-...+ +
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFR--EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGS--CTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhh--ccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 344478899999888999888888765531100 01223344444432 5577766666665543211 1
Q ss_pred C-CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhH----------------HHHHHHHHHHcCCHHHHHHHH
Q 048142 102 K-PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEH----------------YGCLVYILGRAGRIAKAEELI 164 (352)
Q Consensus 102 ~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~ 164 (352)
. .|..-.+.|. ..+..|+.+-+..++ +. |..++... -.+.+..-+..|+.+-+..++
T Consensus 87 ~~~d~~g~t~L~-~A~~~g~~~~v~~Ll----~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 87 RDVYYRGQTALH-IAIERRCKHYVELLV----EK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp CCSSEESBCHHH-HHHHTTCHHHHHHHH----HT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred cccccCCCCHHH-HHHHcCCHHHHHHHH----hC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 1 1112233343 445567776554444 33 65554332 223444556788888777777
Q ss_pred Hh--CCCC---CcHHHHHHHHHHHHhcC-CHH---HHHHHHHHHHH----hC-------CCCcchHHHHHHHHhhcCChH
Q 048142 165 KN--MPMA---LDHFVLGGLLGACRIHD-NLE---AAERAAQQLLE----LL-------PDNGGSYVILSNRYSSSRKWK 224 (352)
Q Consensus 165 ~~--m~~~---p~~~~~~~li~~~~~~g-~~~---~a~~~~~~~~~----~~-------~~~~~~~~~li~~~~~~g~~~ 224 (352)
+. .+.. .|..-++.|..++.... ..+ ...++.+.+.+ .. ..|..-.+ -+..-+..|+.+
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~~ 239 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGKIG 239 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCCHH
Confidence 73 3222 23333344444443222 221 12334444333 11 12322222 344455778888
Q ss_pred HHHHHHHHHHhcC
Q 048142 225 KVKRIRELMAERN 237 (352)
Q Consensus 225 ~a~~~~~~m~~~g 237 (352)
-+..+++.-....
T Consensus 240 ~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 240 IFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcc
Confidence 7777777655433
No 315
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=30.88 E-value=78 Score=27.65 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 173 HFVLGGLLGACRIHDN--LEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 173 ~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
..+|..+|..+....+ .+++..+++.+.++..++...=..|+-.+.+.-..++...+.+.|++.+.+
T Consensus 23 ~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~ 91 (377)
T 3r88_A 23 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHP 91 (377)
T ss_dssp -CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCc
Confidence 3467777766665554 466777777777666555555555555555555666666667777665543
No 316
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.61 E-value=77 Score=24.57 Aligned_cols=15 Identities=20% Similarity=0.136 Sum_probs=7.6
Q ss_pred HHHcCCHHHHHHHHH
Q 048142 151 LGRAGRIAKAEELIK 165 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~ 165 (352)
.+..|+.+-+..+++
T Consensus 113 A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 113 AASKNRHEIAVMLLE 127 (231)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344566555544444
No 317
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.43 E-value=1.7e+02 Score=21.96 Aligned_cols=50 Identities=10% Similarity=0.095 Sum_probs=37.0
Q ss_pred HHHHHHHHHH--hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 192 AERAAQQLLE--LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 192 a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
...+|..|.. .+..-+..|......+...|++.+|.++|..-.+++-+|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5567777765 2455556777777888888888888888888888887773
No 318
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.97 E-value=54 Score=23.59 Aligned_cols=140 Identities=11% Similarity=0.028 Sum_probs=67.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC---hhHHHHHHHH
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKP---DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS---IEHYGCLVYI 150 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~ 150 (352)
+...++.|+.+.+..+++. . +..| |..-.+.+ .. +..|+.+-+..++ +. |..++ ....+ .+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~-~--~~~~~~~~~~g~t~L-~~-~~~~~~~~v~~Ll----~~-g~~~~~~~~~g~t-~L~~ 74 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR-E--LVHPDALNRFGKTAL-QV-MMFGSTAIALELL----KQ-GASPNVQDTSGTS-PVHD 74 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT-T--CCCTTCCCTTSCCHH-HH-SCTTCHHHHHHHH----HT-TCCTTCCCTTSCC-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHh-h--CcCccccCCCCCcHH-HH-HHcCCHHHHHHHH----HC-CCCCCCcCCCCCC-HHHH
Confidence 4445567888877777766 2 1222 22223333 34 6778776555444 32 54443 22222 3344
Q ss_pred HHHcCCHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHH
Q 048142 151 LGRAGRIAKAEELIKNMPMA---LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVK 227 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 227 (352)
-+..|+.+-+.-+++. +.. +|...++. +...+..|+.+-...+++. ......+..-.+ .+...+..|+.+-+.
T Consensus 75 A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t-~l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEH-GADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT-PLELALQRGAQDLVD 150 (156)
T ss_dssp HHHTTCHHHHHHHHHT-TCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC-HHHHHHHSCCHHHHH
T ss_pred HHHcCcHHHHHHHHHc-CCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC-HHHHHHHcCcHHHHH
Confidence 4556777766555553 222 22222222 3334456777666655554 222222222222 233344667766555
Q ss_pred HHHH
Q 048142 228 RIRE 231 (352)
Q Consensus 228 ~~~~ 231 (352)
-+++
T Consensus 151 ~Ll~ 154 (156)
T 1bd8_A 151 ILQG 154 (156)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5443
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.83 E-value=1.4e+02 Score=21.32 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=28.4
Q ss_pred HHHcCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 96 MQIRGVKPDAITFVGVLVACSHAG-LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 96 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
|.+.|++++..=. .++..+...+ ..-.|.++++.+.+. +...+..|..--++.+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCc
Confidence 4455665554332 3444444444 455566666666554 434444443344445554443
No 320
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=29.20 E-value=71 Score=20.91 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHhcCCCCC
Q 048142 121 VDERISHFNLMSEKYGIRPS 140 (352)
Q Consensus 121 ~~~a~~~~~~m~~~~g~~p~ 140 (352)
.++|...|.+|+.+.++.|+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~ 35 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF 35 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHHcCcCCC
Confidence 35555555555555454443
No 321
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.81 E-value=71 Score=24.80 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=54.6
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH---HHHHH
Q 048142 36 CTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT---FVGVL 112 (352)
Q Consensus 36 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll 112 (352)
.++.|+++.. +.+.+.|..++. ++..-+ +.+...++.|+.+- ++.+.+.|..++... -.+.+
T Consensus 16 A~~~g~~~~~----~~Ll~~g~~~~~------~~~~g~-t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 16 ATQYGIYERC----RELVEAGYDVRQ------PDKENV-TLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTC------CCTTSC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHH
T ss_pred HHHcCChHHH----HHHHHcCCCcCC------CCCCCC-CHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChh
Confidence 4677886555 444556666544 332222 23444556677644 444445554443221 11233
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHh
Q 048142 113 VACSHAGLVDERISHFNLMSEKYGIRPSI---EHYGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 113 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
...+..|+.+-+..+ .+. |..++. ... +.+...+..|+.+-+..+++.
T Consensus 81 ~~A~~~~~~~~v~~L----l~~-g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 81 HWATRQGHLSMVVQL----MKY-GADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHHTCHHHHHHH----HHT-TCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHH----HHc-CCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhc
Confidence 444556676654443 332 555432 222 234445667887766666654
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.79 E-value=1.1e+02 Score=19.32 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=39.1
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCH
Q 048142 94 YEMQIRGVKPDAITFVGVLVACSHAG-LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157 (352)
Q Consensus 94 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 157 (352)
+.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+. +...+..|-.-.++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777776644 34556666554 455667777777665 5555666666667777776643
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.78 E-value=92 Score=28.51 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCC----Cc--HHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNMPMA----LD--HFVLGGLL-GACRIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~--~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
...+|.+++.|...+.++.|..+..+..+. ++ ...|.-.+ ..+.-.+++.+|.+.+.......|++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 567888999999999999999999988432 12 13343222 345677889999888888776665543
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.40 E-value=1.7e+02 Score=21.42 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=25.5
Q ss_pred HHHcCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 96 MQIRGVKPDAITFVGVLVACSHAG-LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 96 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
|.+.|++++..=. .++..+...+ ..-.|.++++.+.+. +...+..|.---++.+...|
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCC
Confidence 4445555544322 2334444433 444555555555543 33334433333344444444
No 325
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.26 E-value=1.1e+02 Score=23.69 Aligned_cols=180 Identities=12% Similarity=0.024 Sum_probs=80.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---HHH
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI---TFV 109 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~ 109 (352)
+...+..|+.+ +++.+.+.|..++. .+..-++.|.. .+..|+.+ +++.+.+.|..++.. ..+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~------~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t 79 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDT------CSEDQRTPLME-AAENNHLE----AVKYLIKAGALVDPKDAEGST 79 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTC------CCTTCCCHHHH-HHHTTCHH----HHHHHHTTTCCCCCCCTTSCC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCc------cCCCCCCHHHH-HHHhCCHH----HHHHHHhCCCCCCCCCCCCCc
Confidence 44446677765 44555666766544 33222333333 34566654 344444556544432 222
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcC-CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCc---HHHHHHHHHH
Q 048142 110 GVLVACSHAGLVDERISHFNLMSEKYG-IRP---SIEHYGCLVYILGRAGRIAKAEELIKNMPMALD---HFVLGGLLGA 182 (352)
Q Consensus 110 ~ll~~~~~~g~~~~a~~~~~~m~~~~g-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~---~~~~~~li~~ 182 (352)
.+...+..|+.+-+..++ +. | ..+ +.... +.+..-++.|+.+-...+++.- ..++ .... +.+..
T Consensus 80 -~L~~A~~~~~~~~~~~Ll----~~-~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~-t~L~~ 150 (237)
T 3b7b_A 80 -CLHLAAKKGHYEVVQYLL----SN-GQMDVNCQDDGGW-TPMIWATEYKHVDLVKLLLSKG-SDINIRDNEEN-ICLHW 150 (237)
T ss_dssp -HHHHHHHTTCHHHHHHHH----TT-TCCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSC-CHHHH
T ss_pred -HHHHHHHcCCHHHHHHHH----hC-CCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCC-CHHHH
Confidence 333445567766554443 32 3 222 22222 2334445667777666666542 2221 1111 22333
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
.+..|+.+-...+++.-......+..-. +.+...++.|+.+-+ +.+.+.|..++
T Consensus 151 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~gad~~ 204 (237)
T 3b7b_A 151 AAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYDCV----VLFLSRDSDVT 204 (237)
T ss_dssp HHHHCCHHHHHHHHTTTCCTTCCCTTCC-CHHHHHHHTTCHHHH----HHHHTTTCCTT
T ss_pred HHHCCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHhCCHhHH----HHHHHcCCCCC
Confidence 4455666544444332111111121112 233444556665544 44455676654
No 326
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.09 E-value=2.4e+02 Score=22.55 Aligned_cols=102 Identities=9% Similarity=-0.046 Sum_probs=59.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIR--GVKP----DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
--++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++. . .++...-...+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~---~-~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---S-SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---T-CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-cCCHHHHHHHH
Confidence 3467788899999999999987642 3332 11222223333333223333444444442 1 44566666778
Q ss_pred HHHHHcCCHHHHHHHHHhC------------CCCCcHHHHHHHH
Q 048142 149 YILGRAGRIAKAEELIKNM------------PMALDHFVLGGLL 180 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m------------~~~p~~~~~~~li 180 (352)
..+.+.|+-++|.++|=+. +..-|+..|..=+
T Consensus 99 ~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~L 142 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQL 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 8899999999999988543 3445666664433
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.05 E-value=2e+02 Score=21.56 Aligned_cols=61 Identities=7% Similarity=-0.116 Sum_probs=44.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCC--cHHHHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALK--DVMTLTALIV------VLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 98 (352)
+|..-+..+ ..|++-+|.++++..-+.... + ....|-.||. ...+.|+...|..++.+...
T Consensus 35 ~~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~---------~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLY-NSGEFHESHDCFEDEWYNYGR---------GNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHTTTTCS---------SSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCchHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444444 449999999999999876544 4 4567777777 23458999999999998865
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.96 E-value=72 Score=19.32 Aligned_cols=25 Identities=8% Similarity=-0.096 Sum_probs=18.5
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCC
Q 048142 218 SSSRKWKKVKRIRELMAERNIKKPP 242 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~~~g~~p~~ 242 (352)
+..|+++.|...+-.|...+..|+.
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 4567788888888888777777653
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.57 E-value=2e+02 Score=25.95 Aligned_cols=83 Identities=7% Similarity=-0.024 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 155 GRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 155 g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.+.+-|.++-.+.+..--...|.--...+...|++++|-++.-...++.-.++.|.+.+-.+=..-|+..-...+|..+.
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll 422 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILL 422 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence 55666666666665443344455555666666777776666655555555555555555444444555555556666555
Q ss_pred hcC
Q 048142 235 ERN 237 (352)
Q Consensus 235 ~~g 237 (352)
+.|
T Consensus 423 ~~g 425 (494)
T 1bpo_A 423 DQG 425 (494)
T ss_dssp HHS
T ss_pred ccC
Confidence 554
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.73 E-value=1.3e+02 Score=20.21 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHH
Q 048142 13 LFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKAL 90 (352)
Q Consensus 13 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~ 90 (352)
++..+...|+- +..-...+- ........+.|.++++.+.+.|.. .|..++.++...|+..-|.
T Consensus 26 vld~L~~~~vl-t~~~~e~I~-~~~~~t~~~~ar~Lld~L~~rG~~-------------Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSRELF-RPHMIEDIQ-RAGSGSRRDQARQLIIDLETRGSQ-------------ALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTSS-CHHHHHHHH-TSTTCCHHHHHHHHHHHHTTSCTT-------------HHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHH-hccCCChHHHHHHHHHHHHHcChH-------------HHHHHHHHHHHcCcHHHHH
Confidence 45555666543 333333322 111225789999999999998865 8999999998777765554
No 331
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.72 E-value=92 Score=22.01 Aligned_cols=43 Identities=7% Similarity=-0.184 Sum_probs=27.6
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 92 YFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 92 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
+|+.+.+..+.|+...--.-|..+...++++.|..++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4445555556666554444455556778888888888777653
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.34 E-value=1.9e+02 Score=20.65 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCC
Q 048142 15 REVQHKGLTGDKVTMVSLLLACTHLG-ALEVGMWLHPYIMKKNIE 58 (352)
Q Consensus 15 ~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~ 58 (352)
+.|+..|++++..- ..++..+...+ ..-.|.++++.+.+.+..
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~ 50 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGED 50 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCC
Confidence 34677898887765 44566666665 667799999999987654
No 333
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.21 E-value=2.6e+02 Score=22.00 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 048142 74 TALIVVLAM---CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH 117 (352)
Q Consensus 74 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 117 (352)
-.+|+++.| ..+.+.|+-.+-+|.+.|-.|....-..++.+.-.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 346666644 57899999999999999888877666666655433
No 334
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=23.50 E-value=27 Score=19.24 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=8.1
Q ss_pred ccCCccCCCCC
Q 048142 341 FKNGSCSCKDF 351 (352)
Q Consensus 341 ~~~g~~~~~~~ 351 (352)
-.+|.|||+-|
T Consensus 19 ~~~~~C~CG~y 29 (42)
T 2l0z_A 19 NSLGGCRCGKY 29 (42)
T ss_dssp CTTSSBTTTTB
T ss_pred cCCceeccccc
Confidence 35688999865
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.35 E-value=91 Score=24.76 Aligned_cols=162 Identities=10% Similarity=-0.024 Sum_probs=81.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHh-------HHHHHHHHHh--ccCCHHHHHHHHHHhhHh--------cCCC-
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKPDAI-------TFVGVLVACS--HAGLVDERISHFNLMSEK--------YGIR- 138 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~g~~~~a~~~~~~m~~~--------~g~~- 138 (352)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-... ..+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 444567889998888888888877766643 3345555542 568887777776654321 0011
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHH----------------HHHHHHHHHhcCCHHHHHHHHH---HH
Q 048142 139 PSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFV----------------LGGLLGACRIHDNLEAAERAAQ---QL 199 (352)
Q Consensus 139 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~~---~~ 199 (352)
.|....+ .+..-+..|+.+-+.-+++. +..++... -.+.+...+..|+.+-+..+++ .-
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g 166 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 1112222 33444567887766666664 32322211 1233444456777766555554 21
Q ss_pred HHhCCCCcchHHHHHHHHhhcC-C---hHHHHHHHHHHHhcCCCC
Q 048142 200 LELLPDNGGSYVILSNRYSSSR-K---WKKVKRIRELMAERNIKK 240 (352)
Q Consensus 200 ~~~~~~~~~~~~~li~~~~~~g-~---~~~a~~~~~~m~~~g~~p 240 (352)
......|..-.+.|..+..... . .+...++.+.+.+.|..+
T Consensus 167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 1112223333344444432222 1 222245566666665544
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.34 E-value=1.3e+02 Score=21.83 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCC
Q 048142 136 GIRPSIEHYGCLVYILGRAGRIAKAEELIKNM---PMALDHFVLGGLLGACRIHDN 188 (352)
Q Consensus 136 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~ 188 (352)
|+.++..=. .++..+...+ .-.|.++++.+ +...+..|.---|..+...|-
T Consensus 14 g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 14 GYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp TCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 555544322 3334444444 44566666555 112333333333444444444
No 337
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.59 E-value=3.7e+02 Score=23.17 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhH
Q 048142 30 VSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG--QGNKALEYFYEMQIRGVKPDAIT 107 (352)
Q Consensus 30 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t 107 (352)
..+|.-|...|+.++|.+.++++....+ .......++..++-+.+ ..+....++..+...|+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~f----------hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHF----------HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTC----------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcc----------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_pred HHHHHHHHhccCCHHH----HHHHHHHhhHh
Q 048142 108 FVGVLVACSHAGLVDE----RISHFNLMSEK 134 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~----a~~~~~~m~~~ 134 (352)
...+...+....++.- |..++.++..+
T Consensus 291 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 291 KRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 338
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.52 E-value=1.2e+02 Score=22.83 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
...+|.-|...++.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 56788899999999999999999763
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.46 E-value=2.3e+02 Score=20.65 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=31.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCC
Q 048142 15 REVQHKGLTGDKVTMVSLLLACTHLG-ALEVGMWLHPYIMKKNIE 58 (352)
Q Consensus 15 ~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~ 58 (352)
+.|+..|++++..- ..++..+...+ ..-.|.++++.+.+.+..
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~ 49 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEE 49 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCC
Confidence 45678899888765 44566666665 667799999999987654
No 340
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.42 E-value=2.3e+02 Score=20.64 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 87 NKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 87 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
.....+-+.+.+.|++ -+.--..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|
T Consensus 9 ~~~~~~~~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.88 E-value=2e+02 Score=20.79 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=29.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 048142 15 REVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE 58 (352)
Q Consensus 15 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 58 (352)
+.++..|++++..- ..++..+...+ .-.|.++++.+.+.+..
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~ 49 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASG 49 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCC
Confidence 44677899987754 44455555556 56899999999887654
No 342
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.73 E-value=4.7e+02 Score=23.95 Aligned_cols=69 Identities=17% Similarity=0.014 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHH----HH-HHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 171 LDHFVLGGLLGACRIHDNLEAAERA----AQ-QLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~----~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
.|..-...|-..+...|..++-.++ +. -+.+..+.+......|=..|.+.|++-+|.+++..+...+..
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~ 249 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNFD 249 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSC
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCC
Confidence 4555555555666666655543321 11 122233445556677888899999999999999999877543
No 343
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.40 E-value=2.4e+02 Score=20.39 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=36.0
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHH
Q 048142 95 EMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158 (352)
Q Consensus 95 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 158 (352)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 35556666654332 3444554455556677777777665 44455555555566777776644
No 344
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.26 E-value=1.1e+02 Score=25.91 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=96.5
Q ss_pred HHHHHHHHCCCCCCHHHH--HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHH
Q 048142 12 LLFREVQHKGLTGDKVTM--VSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKA 89 (352)
Q Consensus 12 ~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A 89 (352)
++++.+.+.|..++.... .+.+...+..|+.+-+ +.+.+.|...+.. .-++. +...+..|+.+-+
T Consensus 34 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~--------~g~t~-L~~A~~~g~~~~v 100 (364)
T 3ljn_A 34 DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA----KYLASVGEVHSLW--------HGQKP-IHLAVMANKTDLV 100 (364)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHH----HHHHHHCCCCCCB--------TTBCH-HHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCcccc--------CCCCH-HHHHHHcCCHHHH
Confidence 344555666766643221 2334444667776544 4455556543221 11222 3334467887777
Q ss_pred HHHHHHHHHcCCCCCH--------------------hHHHHHHHHHhccC--CHHHHHHHHHHhhHhcCCCCCh---hHH
Q 048142 90 LEYFYEMQIRGVKPDA--------------------ITFVGVLVACSHAG--LVDERISHFNLMSEKYGIRPSI---EHY 144 (352)
Q Consensus 90 ~~~~~~m~~~g~~p~~--------------------~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~g~~p~~---~~~ 144 (352)
..+++.-...|..|+. .-.+.|. ..+..| ..+-+..++ +. |..++. ...
T Consensus 101 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~~Ll----~~-ga~~~~~d~~g~ 174 (364)
T 3ljn_A 101 VALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIKILV----QL-GASPTAKDKADE 174 (364)
T ss_dssp HHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHHHHH----HH-TCCTTCCCTTSC
T ss_pred HHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHHHHH----Hc-CCCCcccCCCCC
Confidence 7676665554555544 1233444 344556 555444433 32 555432 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC-------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 145 GCLVYILGRAGRIAKAEELIKNMPM-------ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m~~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
+ .+..-+..|+.+-+..+++.-.. ..|..-++ .+...+..|+.+-+..+++.-.+....|..-.+. +..-
T Consensus 175 t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp-L~~A 251 (364)
T 3ljn_A 175 T-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP-LYLS 251 (364)
T ss_dssp C-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH-HHHH
T ss_pred C-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHH
Confidence 3 34445577888877777765311 11222222 2333456777765555544211112222222223 3334
Q ss_pred hhcCChHHHHHHHHH
Q 048142 218 SSSRKWKKVKRIREL 232 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~ 232 (352)
+..|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 566777777666664
No 345
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.50 E-value=2.7e+02 Score=20.65 Aligned_cols=145 Identities=11% Similarity=-0.014 Sum_probs=70.0
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH---HHHHH
Q 048142 36 CTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT---FVGVL 112 (352)
Q Consensus 36 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll 112 (352)
.+..|+.+....++.. .+..++. ++..-++.|..+ ++.|+.+ +++.+.+.|..|+... .+.+
T Consensus 12 A~~~g~~~~v~~ll~~---~~~~~~~------~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l- 76 (201)
T 3hra_A 12 AANQRDTKKVKEILQD---TTYQVDE------VDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPY- 76 (201)
T ss_dssp HHHTTCHHHHHHHHTC---TTCCTTC------CCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHH-
T ss_pred HHHhccHHHHHHHHHc---CCCCCCC------CCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHH-
Confidence 3667887776666532 2223333 333233344333 4556644 4555556676665332 3333
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhc
Q 048142 113 VACSHAGLVDERISHFNLMSEKYGIRP---SIEHYGCLVYILGRAGRIAKAEELIKNMPMA---LDHFVLGGLLGACRIH 186 (352)
Q Consensus 113 ~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~li~~~~~~ 186 (352)
...+..|+.+-+..+++.- +..+ +.... +.+..-++.|+.+-+..+++.-+.. +|..-++.|..+.. .
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~ 150 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHA----TPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG-L 150 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHS----CCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH-S
T ss_pred HHHHHcCCHHHHHHHHhcc----CcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH-h
Confidence 3445667777666655432 3222 22112 2234455678888777777764222 23333333444433 3
Q ss_pred CC-HHHHHHHHHHHHH
Q 048142 187 DN-LEAAERAAQQLLE 201 (352)
Q Consensus 187 g~-~~~a~~~~~~~~~ 201 (352)
++ ...-.++.+.+.+
T Consensus 151 ~~~~~~~~~~v~~Ll~ 166 (201)
T 3hra_A 151 REGNQLYQDIVKLLME 166 (201)
T ss_dssp SCCSHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH
Confidence 33 2223445555544
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.20 E-value=1.6e+02 Score=20.85 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHA 118 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 118 (352)
..+...+..-.|.++++.+.+.+...+..|.--.|+.+...
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 33333444445555555555544333443333333333333
Done!