BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048144
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 9 EGPRAFYRGLVPSLLGIIPYAGIDLAAYESFKEMSKKYILHDSEPGPLVQLGCGTFSGAL 68
EGPR+ Y GLV L + +A + + Y+S K+ Y G +L G+ +GAL
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQF---YTKGSEHAGIGSRLLAGSTTGAL 117
Query: 69 GATCVYPLQVVRTRMQAQ-RMNTESAYTGMSDVFKRTFKSEGLRGFYKGLFPNLLK 123
P VV+ R QAQ R Y + +K + EG+RG +KG PN+ +
Sbjct: 118 AVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVAR 173
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 3 RDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYESFKE-MSKKYILHDSEPGPLVQLGC 61
+ I +EG R ++G P++ +L Y+ K+ + K ++ D P C
Sbjct: 152 KTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLP-------C 204
Query: 62 GTFSGALGA-----TCVYPLQVVRTRMQAQRMNTE-SAYTGMSDVFKRTFKSEGLRGFYK 115
F+ A GA P+ VV+TR MN+ Y + EG R FYK
Sbjct: 205 -HFTSAFGAGFCTTVIASPVDVVKTRY----MNSALGQYHSAGHCALTMLRKEGPRAFYK 259
Query: 116 GLFPNLLKV 124
G P+ L++
Sbjct: 260 GFMPSFLRL 268
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 ILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYESFKE 41
+L +EGPRAFY+G +PS L + + + YE K
Sbjct: 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 64 FSGALGATCV-----YPLQVVRTRMQAQ-------RMNTESAYTGMSDVFKRTFKSEGLR 111
F GA A C+ +PL + R+Q Q R + Y G+ ++EG R
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 112 GFYKGLFPNLLKVVPSASI 130
Y GL L + + AS+
Sbjct: 65 SLYNGLVAGLQRQMSFASV 83
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 5 ILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYESFKEMSKKYILHDSEPGP-----LVQL 59
I +G R Y+G S+ GII Y Y++ K M P P +V
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML---------PDPKNVHIIVSW 213
Query: 60 GCGTFSGALGATCVYPLQVVRTRM--QAQRMNTESAYTGMSDVFKRTFKSEGLRGFYKGL 117
A+ YP VR RM Q+ R + YTG D +++ K EG + F+KG
Sbjct: 214 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGA 273
Query: 118 FPNLLK 123
+ N+L+
Sbjct: 274 WSNVLR 279
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 8 QEGPRAFYRGLVPSLLGIIPYAGIDLAAYESFKEMSKKYILHDSEPGPLV--QLGCGTFS 65
++G +F+RG + +++ P ++ A + +K++ + + L G +
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAA 122
Query: 66 GALGATCVYPLQVVRTRMQAQ--RMNTESAYTGMSDVFKRTFKSEGLRGFYKGL 117
GA VYPL RTR+ A + + +TG+ + + FKS+GLRG Y+G
Sbjct: 123 GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
>pdb|2XEV|A Chain A, Crystal Structure Of The Tpr Domain Of Xanthomonas
Campestris Ybgf
pdb|2XEV|B Chain B, Crystal Structure Of The Tpr Domain Of Xanthomonas
Campestris Ybgf
pdb|2XEV|C Chain C, Crystal Structure Of The Tpr Domain Of Xanthomonas
Campestris Ybgf
Length = 129
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 11 PRAFYRGLVPSLLGIIPYAGIDLAAYES-FKEMSKKYILHDSEPGPLVQLGCGTFSGALG 69
P A Y LG YA + E+ F+++ +Y HD G L++LG +
Sbjct: 39 PNALY------WLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN 92
Query: 70 ATCVYPLQVVRTR 82
LQ V T+
Sbjct: 93 TEAQQTLQQVATQ 105
>pdb|3LL7|A Chain A, Crystal Structure Of Putative Methyltransferase Pg_1098
From Porphyromonas Gingivalis W83
Length = 410
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 91 ESAYTGMSDVFKRTFKSEGLRGFYKGLFPNLLKVVPSASIT 131
ESA+ G RTF E + F + L KVVP ASI+
Sbjct: 332 ESAFPG------RTFVLEEIIPFSTSVLKQLRKVVPQASIS 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,828,220
Number of Sequences: 62578
Number of extensions: 140260
Number of successful extensions: 239
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 9
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)