BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048145
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEA---LMQTDDNGNTAVHALATINNVDVA 85
NG +H+AA E++K L EA + D NG T +H A +++V
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---------EAGADVNAKDKNGRTPLHLAARNGHLEVV 51
Query: 86 KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAE 131
K L+E N DKN G TPL+ AA G +E ++ E
Sbjct: 52 KLLLEAGADVNAKDKN--------GRTPLHLAARNGHLEVVKLLLE 89
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEA---LMQTDDNGNTAVHALATINNVDVA 85
NG +H+AA E++K L EA + D NG T +H A +++V
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLL---------EAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 86 KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAE 131
K L+E N DKN G TPL+ AA G +E ++ E
Sbjct: 85 KLLLEAGADVNAKDKN--------GRTPLHLAARNGHLEVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEA---LMQTDDNGNTAVHALATINNVDVA 85
NG +H+AA E++K L EA + D NG T +H A +++V
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---------EAGADVNAKDKNGRTPLHLAARNGHLEVV 51
Query: 86 KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAE 131
K L+E N DKN G TPL+ AA G +E ++ E
Sbjct: 52 KLLLEAGADVNAKDKN--------GRTPLHLAARNGHLEVVKLLLE 89
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV 120
QTD G TA+H A + D AK L+E S +N +++ +G TPL+ A S
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADAN--------IQDNMGRTPLHAAVSA 68
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
G +H+AAA+ E+++ L + + D NG T +H A++ ++++ + L+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL------RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 90 EFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
++ N D G TPLY AA G +E
Sbjct: 89 KYGADVNAKDAT--------GITPLYLAAYWGHLE 115
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK--- 122
D G T +H A + ++++ + L+ N D N G TPL+ AAS+G
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN--------GTTPLHLAASLGHLEI 83
Query: 123 IEALRYFAEQVNQTAAISILSSKMYIAIW 151
+E L + VN A I + +Y+A +
Sbjct: 84 VEVLLKYGADVNAKDATGI--TPLYLAAY 110
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV 120
QTD G TA+H A + D AK L+E S +N +++ +G TPL+ A S
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADAN--------IQDNMGRTPLHAAVSA 100
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV 120
QTD G TA+H A + D AK L+E S +N +++ +G TPL+ A S
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADAN--------IQDNMGRTPLHAAVSA 101
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV 120
QTD G TA+H A + D AK L+E S +N +++ +G TPL+ A S
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADAN--------IQDNMGRTPLHAAVSA 100
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 14 FAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAV 73
F Q DE GY F GE + +AA P ++ +L P +K + + D GNT +
Sbjct: 125 FFQPKDEG--GYFYF-GELPLSLAACTNQPHIVN-YLTENPHKK--ADMRRQDSRGNTVL 178
Query: 74 HALATINNVDVAKTLVEFSKQSND----------ADKNPLVVENKLGETPLYRAASVGKI 123
HAL I D + +F + D D N V N G +PL AA GKI
Sbjct: 179 HALVAI--ADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTGKI 236
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
+D G TA+H + ++ K LV+F N AD + G TPL+ AAS ++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--------GWTPLHCAASCNNVQV 118
Query: 126 LRYFAEQVNQTAAISILSSKMYIA 149
++ E + A ++ S M A
Sbjct: 119 CKFLVE--SGAAVFAMTYSDMQTA 140
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
G A+H A E++K FL + V + D +G T +H A+ NNV V K LV
Sbjct: 70 GITALHNAVCAGHTEIVK-FLVQFGVN-----VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 90 E 90
E
Sbjct: 124 E 124
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
+D G TA+H + ++ K LV+F N AD + G TPL+ AAS ++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--------GWTPLHCAASCNNVQV 118
Query: 126 LRYFAEQVNQTAAISILSSKMYIA 149
++ E + A ++ S M A
Sbjct: 119 CKFLVE--SGAAVFAMTYSDMQTA 140
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
G A+H A E++K FL + V + D +G T +H A+ NNV V K LV
Sbjct: 70 GITALHNAVCAGHTEIVK-FLVQFGVN-----VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 90 E 90
E
Sbjct: 124 E 124
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
E +H AA +ED +++K L + Q DD GNTA++ N K V
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDS------QFDDKGNTALYYAVDSGNXQTVKLFV 115
Query: 90 EFSKQSNDADKN-PLVVENKLG-ETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY 147
+ KN L K G +T Y A + + + YF ++ T ++IL S ++
Sbjct: 116 K---------KNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAILLSCIH 166
Query: 148 IAI 150
I I
Sbjct: 167 ITI 169
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
DD+G T +H A ++++ + L++ N AD K+G+TPL+ AA G +E
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD--------KMGDTPLHLAALYGHLE 94
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAE 326
L A G +EI+E + K+ ++ ++ G LH+A +Y LEI E++ L
Sbjct: 51 LHLAAIKGHLEIVE-VLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL-----LKNGA 104
Query: 327 WALKIDNEGYTILHQVAD 344
D G+T LH AD
Sbjct: 105 DVNATDTYGFTPLHLAAD 122
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV 120
QTD G TA+H A + D AK L+E S + +++ +G TPL+ A S
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADA--------XIQDNMGRTPLHAAVSA 65
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 69 GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
G TA+H A ++N + K LV ++ ++ DK +++ G+TP+ AA G+IE + Y
Sbjct: 279 GRTALHYAAQVSNXPIVKYLV--GEKGSNKDK-----QDEDGKTPIXLAAQEGRIEVVXY 331
Query: 129 FAEQVNQTAAISILSSKMYIAIWRQVIQ 156
+ Q A++ + + + A RQ+ Q
Sbjct: 332 L---IQQGASVEAVDATDHTA--RQLAQ 354
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAE 326
L V+NG +EI+E + KY ++ ++ G LH+A LEI E++ L
Sbjct: 51 LHLVVNNGHLEIIE-VLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL-----LKYGA 104
Query: 327 WALKIDNEGYTILHQVAD 344
+D +GYT LH A+
Sbjct: 105 DVNAMDYQGYTPLHLAAE 122
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
+G TA+H +NVD+ K LVE N D G PL+ AAS G ++
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNE--------GWIPLHAAASCGYLDIAE 123
Query: 128 YFAEQVNQTAAIS 140
Y Q A++
Sbjct: 124 YLISQGAHVGAVN 136
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
+G TA+H A +V K L++ N +++ G TPL+ AA GK EA R
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVN--------IKDYDGWTPLHAAAHWGKEEACR 249
Query: 128 YFAEQVNQTAAIS 140
E + A++
Sbjct: 250 ILVENLCDMEAVN 262
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 5 GDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQ 64
GD + LR + D + Y +G A+H A ++ +++K FL VE + Q
Sbjct: 51 GDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVK-FL----VENGAN-INQ 101
Query: 65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPL 114
D+ G +HA A+ +D+A+ L+ + N G+TPL
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAH--------VGAVNSEGDTPL 143
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 30 GECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
G A+ V + +PE+ ++ L G P K D GN +H A +D +T
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLK--------DRTGNAVIHDAARAGFLDTLQT 88
Query: 88 LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
L+EF AD N +E+ G PL+ AA G + + + +
Sbjct: 89 LLEFQ-----ADVN---IEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
Y +G H+A ++ + E++K R P++ L + + G T +H +V
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKIT---NQGVTCLHLAVGKKWFEV 122
Query: 85 AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
++ L+E N A + +++K + PL+RAASVG ++
Sbjct: 123 SQFLIE-----NGAS---VRIKDKFNQIPLHRAASVGSLK 154
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 29 NGECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
+G+ +H+AA E++K L G P K D +G T +H A + +V K
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAK--------DSDGKTPLHLAAENGHKEVVK 87
Query: 87 TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
L+ S AD N ++ G+TPL+ AA G E ++ Q
Sbjct: 88 LLL-----SQGADPN---AKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
+D +G T +H A + +V K L+ S AD N ++ G+TPL+ AA G E
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLL-----SQGADPN---AKDSDGKTPLHLAAENGHKE 84
Query: 125 ALRYFAEQ 132
++ Q
Sbjct: 85 VVKLLLSQ 92
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
Y +G H+A ++ + E++K R P++ L + + G T +H +V
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKIT---NQGVTCLHLAVGKKWFEV 122
Query: 85 AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFA 130
++ L+E N A + +++K + PL+RAASVG ++ +
Sbjct: 123 SQFLIE-----NGAS---VRIKDKFNQIPLHRAASVGSLKLIELLC 160
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
Y +G H+A ++ + E++K R P++ L + + G T +H +V
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKIT---NQGVTCLHLAVGKKWFEV 122
Query: 85 AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
++ L+E N A + +++K + PL+RAASVG ++
Sbjct: 123 SQFLIE-----NGAS---VRIKDKFNQIPLHRAASVGSLK 154
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
G+ +H+AA + E+++ L K + D +G+T +H A ++++ + L+
Sbjct: 47 GDTPLHLAARVGHLEIVEVLL------KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 90 EFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
++ N ++ +G TPL+ AA G +E
Sbjct: 101 KYGADVN--------ADDTIGSTPLHLAADTGHLE 127
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
DD G T +H A ++++ + L++ N +D G TPL+ AA+VG +E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS--------WGRTPLHLAATVGHLEI 95
Query: 126 LRYFAE 131
+ E
Sbjct: 96 VEVLLE 101
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
G +H+AA E+++ L K + +D G T +H AT+ ++++ + L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL------KHGADVNASDSWGRTPLHLAATVGHLEIVEVLL 100
Query: 90 EFSKQSNDADK 100
E+ N DK
Sbjct: 101 EYGADVNAQDK 111
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI--NNVDVAKT 87
GE + +AA + +++ L LEA TD GNT +HAL I N+ + +
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEA---TDSLGNTVLHALVMIADNSPENSAL 192
Query: 88 LVEFSKQ--SNDADKNPLV----VENKLGETPLYRAASVGKIEALRYFAEQ 132
++ A P V + N G TPL AA GKIE R+ ++
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 14 FAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAV 73
F Q DE GY F GE + +AA P ++ + L + D GNT +
Sbjct: 127 FFQPKDEG--GYFYF-GELPLSLAACTNQPHIVHYLTEN---GHKQADLRRQDSRGNTVL 180
Query: 74 HALATINNVDVAKTLVEFSKQSND----------ADKNPLVVENKLGETPLYRAASVGKI 123
HAL I D + +F + D D N + N G +PL AA GKI
Sbjct: 181 HALVAI--ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI--NNVDVAKT 87
GE + +AA + +++ L LEA TD GNT +HAL I N+ + +
Sbjct: 149 GELPLSLAACTKQWDVVTYLLENPHQPASLEA---TDSLGNTVLHALVMIADNSPENSAL 205
Query: 88 LVEFSKQ--SNDADKNPLV----VENKLGETPLYRAASVGKIEALRYFAEQ 132
++ A P V + N G TPL AA GKIE R+ ++
Sbjct: 206 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 256
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
TD +G T +H AT ++++ + L++ + AD N + + +G TPL+ AA +G +E
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLK-----HGADVNAIDI---MGSTPLHLAALIGHLE 94
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
+G +H+AA E+++ L K + D G+T +H A I ++++ + L
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLL------KHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 89 VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
++ N D G+TPL+ AA +G +E
Sbjct: 100 LKHGADVNAVDT--------WGDTPLHLAAIMGHLE 127
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKE 411
ER + P +Y RD N + ++D+T ED +K ++W+KE
Sbjct: 66 ERFHALGPIYY---RDSNGAIL---VYDITDEDSFQKVKNWVKE 103
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 30 GECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
G A+ V + +PE+ ++ L G P K D G +H A +D +T
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLK--------DRTGFAVIHDAARAGQLDTLQT 88
Query: 88 LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
L+EF AD N +E+ G PL+ AA G + + + +
Sbjct: 89 LLEFQ-----ADVN---IEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
DD G T +H A ++++ + L++ N +D G TPL+ AA+VG +E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI--------WGRTPLHLAATVGHLEI 95
Query: 126 LRYFAE 131
+ E
Sbjct: 96 VEVLLE 101
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKE 411
ER + P +Y RD N + ++D+T ED +K ++W+KE
Sbjct: 80 ERFHALGPIYY---RDSNGAIL---VYDITDEDSFQKVKNWVKE 117
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKE 411
ER + P +Y RD N + ++D+T ED +K ++W+KE
Sbjct: 66 ERFHALGPIYY---RDSNGAIL---VYDITDEDSFQKVKNWVKE 103
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
+G +H+AA E+++ L K + D G+T +H A I ++++ + L
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLL------KHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 89 VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
++ N D G+TPL+ AA +G +E
Sbjct: 100 LKHGADVNAVDT--------WGDTPLHLAAIMGHLE 127
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
TD +G T +H AT ++++ + L++ + AD N + + G TPL+ AA +G +E
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLK-----HGADVNAIDIX---GSTPLHLAALIGHLE 94
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
DD G+T +H A I + ++ + L++ N D + G TPL+ AA G +E
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD--------GWTPLHLAADNGHLEI 95
Query: 126 ----LRYFAEQVNQTA 137
L+Y A+ Q A
Sbjct: 96 VEVLLKYGADVNAQDA 111
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 66 DDNGNTAVHALATI--NNVDVAKTLVEFSKQSN--DADKNPLV----VENKLGETPLYRA 117
D GNT +HAL + N VD K + + A +P + + N+ G TPL A
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240
Query: 118 ASVGKIEALRYFAEQ 132
AS GKI L Y ++
Sbjct: 241 ASSGKIGVLAYILQR 255
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
DD G T +H A ++++ + L++ N D G TPL+ AA+VG +E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI--------WGRTPLHLAATVGHLEI 95
Query: 126 LRYFAE 131
+ E
Sbjct: 96 VEVLLE 101
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 33 AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD------DN-GNTAVHALATINNVDVA 85
A ++ A M D RL +E +E L+ D DN G TA+H A +NN +
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV 167
Query: 86 KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYF 129
L+ + DA ++ ETPL+ AA G EA +
Sbjct: 168 NILL-MHHANRDA-------QDDKDETPLFLAAREGSYEASKAL 203
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 34 IHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSK 93
+H+AA+ E++K LG+ ++ A+ Q NG T +H A+ N ++A L+E
Sbjct: 78 LHIAASAGRDEIVKALLGK---GAQVNAVNQ---NGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 94 QSNDADKNPLVVENKLGETPLYRAASVGK---IEALRYFAEQVN 134
+ D T ++RAA+ G I L Y+ N
Sbjct: 132 NPDAKDHYE--------ATAMHRAAAKGNLKMIHILLYYKASTN 167
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
+TD + TA+H + + ++ + L++ ND D G +PL+ AAS G+
Sbjct: 36 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--------DAGWSPLHIAASAGRD 87
Query: 124 EALRYFAEQVNQTAAIS 140
E ++ + Q A++
Sbjct: 88 EIVKALLGKGAQVNAVN 104
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 30 GECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
G A+ V + +PE+ ++ L G P K D G +H A +D +T
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLK--------DRTGFAVIHDAARAGFLDTLQT 88
Query: 88 LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
L+EF AD N +E+ G PL+ AA G + + + +
Sbjct: 89 LLEFQ-----ADVN---IEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 30 GECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
G A+ V + +PE+ ++ L G P K D G +H A +D +T
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLK--------DRTGFAVIHDAARAGFLDTLQT 88
Query: 88 LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
L+EF AD N +E+ G PL+ AA G + + + +
Sbjct: 89 LLEFQ-----ADVN---IEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 34 IHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSK 93
+H+AA+ E++K LG+ ++ A+ Q NG T +H A+ N ++A L+E
Sbjct: 77 LHIAASAGRDEIVKALLGK---GAQVNAVNQ---NGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 94 QSNDADKNPLVVENKLGETPLYRAASVGK---IEALRYFAEQVN 134
+ D T ++RAA+ G I L Y+ N
Sbjct: 131 NPDAKDHYE--------ATAMHRAAAKGNLKMIHILLYYKASTN 166
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
+TD + TA+H + + ++ + L++ ND D G +PL+ AAS G+
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--------DAGWSPLHIAASAGRD 86
Query: 124 EALRYFAEQVNQTAAIS 140
E ++ + Q A++
Sbjct: 87 EIVKALLGKGAQVNAVN 103
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 61 ALMQTDDNGNTAVHALATIN-----NVDVAKTLVEFSKQSNDADKNPLV----VENKLGE 111
+L TD GNT +HAL I+ N+ + + + Q+ A P V + N
Sbjct: 169 SLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAG-ARLCPTVQLEDIRNLQDL 227
Query: 112 TPLYRAASVGKIEALRYFAEQ 132
TPL AA GKIE R+ ++
Sbjct: 228 TPLKLAAKEGKIEIFRHILQR 248
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVE 90
E +H+AA E+ K L + ++ A + D T +H A I + ++ K L+E
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQN---KAKVNAKAKDDQ---TPLHCAARIGHTNMVKLLLE 101
Query: 91 FSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
N+A+ N + G TPL+ AA G +E + E+
Sbjct: 102 -----NNANPN---LATTAGHTPLHIAAREGHVETVLALLEK 135
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
+G +H+AA+ E+++ L K + +D G T +H A ++++ + L
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLL------KNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 89 VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
++ N D + G TPL+ AA G +E
Sbjct: 100 LKHGADVNAYDND--------GHTPLHLAAKYGHLE 127
>pdb|2WAF|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain R6)
Length = 682
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 40 MEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
+ DPE+ KK + LP EKRL D +GN + N VD +T
Sbjct: 121 LADPEIYKKIVEALPSEKRL------DSDGNRLSESELYNNAVDSVQT 162
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 67 ERYHSLAPXYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 110
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 367 FERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 64 LERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 108
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 67 ERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 110
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
+ D GNT ++ N++++AK L++ N ++N + ++P A + G+
Sbjct: 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN--------LQNSISDSPYLYAGAQGRT 85
Query: 124 EALRYF 129
E L Y
Sbjct: 86 EILAYM 91
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 66 ERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 66 ERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 66 ERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 66 ERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 66 ERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 367 FERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+ D +A++W+KE + S
Sbjct: 64 LERYHSLAPMYY------RGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 108
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+E+ +A++W+KE + S
Sbjct: 66 ERYHSLAPMYY------RGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 46 IKKFLGRLPVEKRLEALMQTDDNGNTAVHA--LATINNVDVAKTLVEFSKQSNDADKNPL 103
+K L L ++ ++ L G H LAT+ VD K ++EF+ ++ +PL
Sbjct: 270 VKDALIELGLDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPET----PSPL 325
Query: 104 --VVENKLGETPLYRAASVGK 122
++ENK+ PL + + K
Sbjct: 326 IGILENKIIRMPLVESVKLTK 346
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+ D +A++W+KE + S
Sbjct: 63 ERYHSLAPMYY------RGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 106
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 368 ERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCS 417
ER +AP +Y A ++D+T+ D +A++W+KE + S
Sbjct: 65 ERYHSLAPMYY------RGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,902,932
Number of Sequences: 62578
Number of extensions: 554752
Number of successful extensions: 1525
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 150
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)