Query 048145
Match_columns 578
No_of_seqs 416 out of 4448
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 9.8E-41 3.4E-45 350.7 26.9 322 1-398 21-388 (437)
2 3d9h_A CDNA FLJ77766, highly s 100.0 2.8E-38 9.7E-43 312.2 22.5 233 1-346 22-266 (285)
3 3utm_A Tankyrase-1; tankyrase, 100.0 4.5E-38 1.6E-42 319.9 24.3 131 1-147 31-166 (351)
4 1n11_A Ankyrin; clathrin, BAND 100.0 5.2E-38 1.8E-42 329.9 24.6 284 1-348 87-390 (437)
5 2xai_A ASB-9, ankyrin repeat a 100.0 3.7E-38 1.3E-42 307.3 21.7 205 29-346 2-210 (261)
6 3b7b_A Euchromatic histone-lys 100.0 7.4E-38 2.5E-42 300.4 22.7 214 23-348 4-223 (237)
7 1wdy_A 2-5A-dependent ribonucl 100.0 1.7E-37 5.8E-42 305.9 24.1 235 1-348 12-266 (285)
8 1yyh_A HN1;, notch 1, ankyrin 100.0 4.7E-38 1.6E-42 305.1 18.0 214 23-348 3-236 (253)
9 1k1a_A B-cell lymphoma 3-encod 100.0 1.8E-37 6.3E-42 298.2 21.4 216 23-348 2-229 (241)
10 1oy3_D Transcription factor in 100.0 2.1E-37 7.2E-42 305.1 19.1 217 23-347 2-270 (282)
11 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-36 5.2E-41 307.4 23.7 240 30-348 59-314 (337)
12 1wdy_A 2-5A-dependent ribonucl 100.0 3.7E-36 1.2E-40 296.3 22.8 250 29-398 4-264 (285)
13 3d9h_A CDNA FLJ77766, highly s 100.0 3.9E-36 1.3E-40 296.8 21.9 244 26-396 11-264 (285)
14 3aji_A 26S proteasome non-ATPa 100.0 6.5E-36 2.2E-40 285.6 21.3 211 27-348 3-218 (231)
15 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-36 8.1E-41 310.2 19.5 222 24-348 118-359 (373)
16 2dzn_A Probable 26S proteasome 100.0 9.7E-36 3.3E-40 283.7 21.1 210 30-346 2-219 (228)
17 4b93_B Ankyrin repeat domain-c 100.0 1.2E-36 4.2E-41 297.3 14.7 216 24-346 5-229 (269)
18 3ljn_A Hypothetical protein; a 100.0 4E-36 1.4E-40 307.7 17.9 213 22-348 12-257 (364)
19 2xai_A ASB-9, ankyrin repeat a 100.0 9E-36 3.1E-40 290.4 19.4 234 1-348 10-251 (261)
20 4g8k_A 2-5A-dependent ribonucl 100.0 1E-34 3.5E-39 294.0 25.2 248 27-348 22-286 (337)
21 3aji_A 26S proteasome non-ATPa 100.0 5.7E-35 2E-39 279.0 20.3 208 1-317 13-225 (231)
22 1s70_B 130 kDa myosin-binding 100.0 1.1E-35 3.7E-40 295.7 15.0 258 2-346 6-276 (299)
23 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-34 5.7E-39 280.0 21.0 204 6-317 35-243 (253)
24 3kea_A K1L; tropism, ANK repea 100.0 1.2E-34 4E-39 286.2 20.0 221 1-347 6-233 (285)
25 1oy3_D Transcription factor in 100.0 1.4E-34 4.7E-39 284.9 19.4 254 62-400 2-271 (282)
26 3ljn_A Hypothetical protein; a 100.0 9E-35 3.1E-39 297.7 17.9 240 1-348 27-302 (364)
27 2f8y_A Notch homolog 1, transl 100.0 3.6E-34 1.2E-38 272.0 18.4 209 5-322 2-215 (223)
28 3utm_A Tankyrase-1; tankyrase, 100.0 6.5E-34 2.2E-38 289.2 21.4 232 1-344 65-322 (351)
29 2fo1_E LIN-12 protein; beta-ba 100.0 7.1E-35 2.4E-39 299.2 13.3 241 24-397 88-356 (373)
30 3eu9_A Huntingtin-interacting 100.0 1.2E-33 4.1E-38 271.0 20.9 213 24-348 3-223 (240)
31 1ikn_D Protein (I-kappa-B-alph 100.0 6.4E-35 2.2E-39 279.8 9.2 212 24-346 2-230 (236)
32 3b7b_A Euchromatic histone-lys 100.0 1.4E-32 4.9E-37 263.5 23.9 213 62-399 4-222 (237)
33 4b93_B Ankyrin repeat domain-c 100.0 2.9E-34 9.8E-39 280.5 11.7 206 1-316 18-235 (269)
34 2f8y_A Notch homolog 1, transl 100.0 2E-33 6.9E-38 266.8 16.8 196 41-348 2-204 (223)
35 1k1a_A B-cell lymphoma 3-encod 100.0 2.1E-33 7E-38 269.9 16.0 214 1-317 16-236 (241)
36 2rfa_A Transient receptor pote 100.0 1.9E-32 6.6E-37 261.7 22.1 188 29-317 2-217 (232)
37 2dzn_A Probable 26S proteasome 100.0 7.1E-33 2.4E-37 263.9 18.2 206 1-317 9-225 (228)
38 3hra_A Ankyrin repeat family p 100.0 9.1E-32 3.1E-36 251.0 22.0 185 27-317 2-198 (201)
39 1sw6_A Regulatory protein SWI6 100.0 5E-33 1.7E-37 280.1 13.9 246 2-346 55-327 (327)
40 1s70_B 130 kDa myosin-binding 100.0 4.1E-32 1.4E-36 269.8 16.5 244 36-404 4-282 (299)
41 3eu9_A Huntingtin-interacting 100.0 2.5E-31 8.6E-36 254.8 20.7 209 1-317 16-230 (240)
42 2pnn_A Transient receptor pote 100.0 2E-31 7E-36 261.3 14.3 215 23-340 6-272 (273)
43 1ikn_D Protein (I-kappa-B-alph 100.0 5.9E-32 2E-36 259.2 10.2 217 63-395 2-227 (236)
44 3kea_A K1L; tropism, ANK repea 100.0 4.9E-31 1.7E-35 260.2 16.7 209 1-333 38-252 (285)
45 2rfa_A Transient receptor pote 100.0 1.6E-30 5.4E-35 248.4 19.6 188 68-348 2-210 (232)
46 2etb_A Transient receptor pote 100.0 4.1E-31 1.4E-35 256.6 15.5 190 29-317 1-241 (256)
47 4gpm_A Engineered protein OR26 100.0 2.2E-30 7.7E-35 233.8 18.3 158 32-329 6-163 (169)
48 3hra_A Ankyrin repeat family p 100.0 3.6E-29 1.2E-33 233.3 19.7 179 66-348 2-191 (201)
49 2pnn_A Transient receptor pote 100.0 6.8E-30 2.3E-34 250.5 15.2 200 62-348 6-246 (273)
50 2etb_A Transient receptor pote 100.0 1.8E-29 6.1E-34 245.0 17.7 189 68-348 1-234 (256)
51 3jxi_A Vanilloid receptor-rela 100.0 8.2E-30 2.8E-34 247.9 14.7 192 27-317 2-245 (260)
52 3v30_A DNA-binding protein rfx 100.0 1.4E-28 4.8E-33 223.4 18.8 170 30-338 2-171 (172)
53 4hbd_A KN motif and ankyrin re 100.0 1.5E-29 5E-34 248.3 13.2 189 29-320 75-273 (276)
54 4gpm_A Engineered protein OR26 100.0 1E-28 3.4E-33 223.0 15.6 150 1-191 11-165 (169)
55 2rfm_A Putative ankyrin repeat 100.0 2.6E-28 9E-33 225.9 18.9 163 20-317 25-187 (192)
56 1sw6_A Regulatory protein SWI6 100.0 2E-29 6.7E-34 253.8 9.3 186 7-308 109-327 (327)
57 3jxi_A Vanilloid receptor-rela 100.0 2.1E-28 7.1E-33 238.0 15.6 192 66-348 2-238 (260)
58 3v31_A Ankyrin repeat family A 100.0 1.2E-27 4.1E-32 216.1 18.8 154 29-317 2-155 (167)
59 2vge_A RELA-associated inhibit 100.0 1.7E-30 5.9E-35 247.4 -0.2 198 11-350 2-203 (229)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.9E-27 6.6E-32 215.3 17.3 159 24-317 8-166 (169)
61 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.9E-27 6.6E-32 213.5 15.5 155 28-317 3-157 (162)
62 3f6q_A Integrin-linked protein 99.9 2.4E-27 8.2E-32 216.8 14.0 169 28-335 3-171 (179)
63 1awc_B Protein (GA binding pro 99.9 8E-27 2.7E-31 207.5 16.4 151 30-316 2-152 (153)
64 4hbd_A KN motif and ankyrin re 99.9 4.5E-27 1.5E-31 230.6 14.0 179 2-287 84-274 (276)
65 2rfm_A Putative ankyrin repeat 99.9 1.1E-26 3.7E-31 215.0 15.4 153 62-348 28-180 (192)
66 3twr_A Tankyrase-2; ankyrin re 99.9 4.8E-27 1.7E-31 211.6 12.3 157 26-317 4-160 (165)
67 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.6E-26 5.4E-31 206.1 15.5 152 30-317 2-153 (156)
68 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.5E-27 1.2E-31 226.4 10.8 179 28-347 3-193 (239)
69 3v30_A DNA-binding protein rfx 99.9 9E-26 3.1E-30 204.8 14.5 130 1-146 9-143 (172)
70 3v31_A Ankyrin repeat family A 99.9 1.6E-25 5.3E-30 202.1 15.2 147 68-348 2-148 (167)
71 2aja_A Ankyrin repeat family p 99.9 6.7E-28 2.3E-32 245.3 -0.8 127 25-186 87-223 (376)
72 2aja_A Ankyrin repeat family p 99.9 3.6E-28 1.2E-32 247.3 -3.6 253 1-348 99-362 (376)
73 1awc_B Protein (GA binding pro 99.9 4.9E-25 1.7E-29 195.8 14.7 145 69-348 2-146 (153)
74 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.5E-25 8.5E-30 199.6 12.9 145 1-187 12-162 (162)
75 3t8k_A Uncharacterized protein 99.9 1.5E-25 5.1E-30 205.6 10.5 169 30-333 6-185 (186)
76 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.2E-24 4.1E-29 196.8 15.3 144 1-185 21-169 (169)
77 3f6q_A Integrin-linked protein 99.9 6.3E-25 2.2E-29 200.6 13.3 151 1-191 12-167 (179)
78 3twr_A Tankyrase-2; ankyrin re 99.9 9.3E-25 3.2E-29 196.6 11.9 145 1-186 15-164 (165)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.3E-24 7.7E-29 192.1 13.7 143 1-184 9-155 (156)
80 2vge_A RELA-associated inhibit 99.9 2.8E-25 9.4E-30 211.4 7.3 164 46-346 1-167 (229)
81 1d9s_A Cyclin-dependent kinase 99.9 2.6E-24 9E-29 187.0 11.5 127 22-187 4-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 2.2E-24 7.5E-29 192.3 9.2 147 62-343 5-152 (156)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 4.1E-24 1.4E-28 190.5 10.2 93 24-131 6-99 (156)
84 1d9s_A Cyclin-dependent kinase 99.9 2.4E-23 8.1E-28 181.0 12.5 126 62-317 5-131 (136)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 5.4E-23 1.8E-27 178.7 12.1 124 24-185 8-136 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-22 4.1E-27 173.5 14.0 121 29-187 1-126 (126)
87 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.5E-23 1.9E-27 197.0 11.0 165 1-207 12-190 (239)
88 3t8k_A Uncharacterized protein 99.9 1.8E-23 6.3E-28 191.7 6.6 146 1-189 13-181 (186)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 9.6E-22 3.3E-26 170.8 13.1 124 65-317 10-133 (136)
90 3c5r_A BARD-1, BRCA1-associate 99.9 1.4E-22 5E-27 176.2 7.6 108 25-146 5-117 (137)
91 3deo_A Signal recognition part 99.9 4E-22 1.4E-26 182.6 10.8 105 27-146 41-151 (183)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.3E-21 1.1E-25 164.5 14.7 121 68-317 1-121 (126)
93 2b0o_E UPLC1; arfgap, structur 99.9 2.1E-21 7.3E-26 192.2 15.3 151 64-348 146-299 (301)
94 3ui2_A Signal recognition part 99.9 1.2E-21 4.1E-26 188.2 12.5 105 27-146 42-152 (244)
95 3aaa_C Myotrophin, protein V-1 99.9 1.5E-21 5.1E-26 166.4 9.7 107 26-146 3-114 (123)
96 3c5r_A BARD-1, BRCA1-associate 99.8 9.3E-22 3.2E-26 171.1 7.8 125 64-317 5-129 (137)
97 3ui2_A Signal recognition part 99.8 1.3E-22 4.5E-27 195.0 2.2 162 28-317 13-180 (244)
98 3deo_A Signal recognition part 99.8 3.7E-22 1.3E-26 182.9 4.4 134 65-317 40-179 (183)
99 3ehr_A Osteoclast-stimulating 99.8 1.8E-21 6.2E-26 184.1 7.4 130 24-191 67-202 (222)
100 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.6E-20 5.4E-25 151.4 10.6 90 29-132 1-90 (93)
101 3ehr_A Osteoclast-stimulating 99.8 3.7E-21 1.3E-25 182.0 7.6 178 24-335 19-206 (222)
102 2b0o_E UPLC1; arfgap, structur 99.8 1E-20 3.6E-25 187.2 10.2 129 1-146 158-294 (301)
103 3aaa_C Myotrophin, protein V-1 99.8 2E-20 6.7E-25 159.3 9.6 116 66-310 4-119 (123)
104 1dcq_A PYK2-associated protein 99.8 5.3E-19 1.8E-23 172.9 12.5 116 1-132 137-260 (278)
105 3jue_A Arfgap with coiled-coil 99.8 5.7E-19 1.9E-23 178.8 13.0 151 65-346 195-348 (368)
106 1dcq_A PYK2-associated protein 99.8 4.6E-19 1.6E-23 173.4 11.8 67 266-346 208-274 (278)
107 3lvq_E ARF-GAP with SH3 domain 99.8 8.8E-19 3E-23 186.1 14.1 125 29-191 131-269 (497)
108 2l6b_A NR1C; ankyrin, consensu 99.8 3.3E-19 1.1E-23 149.7 8.4 103 25-141 4-111 (115)
109 3jue_A Arfgap with coiled-coil 99.8 9.8E-19 3.4E-23 177.0 12.3 123 28-188 197-327 (368)
110 2zgd_A 3 repeat synthetic anky 99.8 1.2E-18 4.1E-23 145.0 9.6 96 20-129 14-109 (110)
111 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-18 4.3E-23 184.9 11.4 128 1-146 139-275 (497)
112 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.2E-18 1.1E-22 137.7 10.5 88 68-187 1-93 (93)
113 2l6b_A NR1C; ankyrin, consensu 99.7 2.8E-17 9.7E-22 137.8 6.6 68 266-339 45-112 (115)
114 2zgd_A 3 repeat synthetic anky 99.6 6.6E-16 2.2E-20 128.3 8.0 83 260-348 21-103 (110)
115 3rhw_A Avermectin-sensitive gl 27.0 3.4E+02 0.012 25.9 10.3 40 508-547 255-295 (347)
116 3mkq_B Coatomer subunit alpha; 25.2 1.4E+02 0.0047 25.7 6.1 109 1-132 15-140 (177)
117 1vry_A Glycine receptor alpha- 24.7 1E+02 0.0035 22.4 4.3 36 513-548 19-55 (76)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.8e-41 Score=350.70 Aligned_cols=322 Identities=16% Similarity=0.180 Sum_probs=216.2
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.++++ ....+..+..|.||||+|+..|+.++|++|+++ +++ ++.+|.+|+||||+|++.|
T Consensus 21 Aa~~g~~~~v~~Ll~~---g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 21 ASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAK-----VNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHTCHHHHHHHHHT---TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCC-----SSCCCTTSCCHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCC-----CCCCCCCCCCHHHHHHHCC
Confidence 5778999977777776 344567788999999999999999999999998 888 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHH----
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIW---- 151 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~---- 151 (578)
+.+++++|+++|+ +++..+..|.||||+|+.+|+.+++++|++. ..+..|.||||+|+..+..
T Consensus 92 ~~~~v~~Ll~~ga--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 92 HTNMVKLLLENNA--------NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp CHHHHHHHHHHTC--------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhCCC--------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999998 8889999999999999999999999999987 4567899999999853211
Q ss_pred ---HH-------hccCc-hHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145 152 ---RQ-------VIQGC-PAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA 220 (578)
Q Consensus 152 ---~~-------~~~G~-~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (578)
.. ...|. |++.++.... .+++++|+++|.+++.. +..|.|++|+|+..+ .
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~----------~ 224 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNN------LDIVKLLLPRGGSPHSP---AWNGYTPLHIAAKQN----------Q 224 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTC------HHHHHHHGGGTCCSCCC---CTTCCCHHHHHHHTT----------C
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCC------HHHHHHHHhCCCCCCCc---CCCCCCHHHHHHHcC----------C
Confidence 00 11222 5555555554 67777777777665443 224667777764433 3
Q ss_pred hhHHHHHHHHhcCCccccccccCccccccccccccccc--------------------------ccccchhHHHHHHhcC
Q 048145 221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMT--------------------------SSMRTMRILLFAVSNG 274 (578)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t--------------------------~~~~g~~pLh~Aa~~G 274 (578)
.+.++.++....+ .+..+..|.| .+..|.||||+|++.|
T Consensus 225 ~~~~~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 289 (437)
T 1n11_A 225 VEVARSLLQYGGS---------------ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 289 (437)
T ss_dssp HHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCC---------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence 4445544432211 1111112222 1222333666666556
Q ss_pred HHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCC
Q 048145 275 IIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQA 354 (578)
Q Consensus 275 ~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~ 354 (578)
+.+++++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+ +.|+++|.+|..|+||||+|+..|+.
T Consensus 290 ~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-----~~gad~n~~~~~g~t~L~~A~~~g~~------ 357 (437)
T 1n11_A 290 HVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-----QHQADVNAKTKLGYSPLHQAAQQGHT------ 357 (437)
T ss_dssp CHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCH------
T ss_pred CHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH-----hcCCCCCCCCCCCCCHHHHHHHCChH------
Confidence 6666665555 45555555555666666666666666666555 34445555666666666666655543
Q ss_pred ChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhhhh
Q 048145 355 GPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTH 398 (578)
Q Consensus 355 ~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~~ 398 (578)
+.++.++..+......+.+|+||.+++.+..
T Consensus 358 -------------~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 358 -------------DIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp -------------HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred -------------HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 4555555555554444449999999876543
No 2
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=312.20 Aligned_cols=233 Identities=12% Similarity=0.101 Sum_probs=193.5
Q ss_pred CcccCChHHHHHHHhcCCc--------hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChH
Q 048145 1 MALKGDRQGFLRYFAQQTD--------EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTA 72 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~--------~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~Tp 72 (578)
||+.|+.+.+.+++..... ....+..|..|.||||+||..|+.++|++|++. +.+ ++.+|.+|+||
T Consensus 22 Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~ 95 (285)
T 3d9h_A 22 ASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWA-----VNIITADHVSP 95 (285)
T ss_dssp --------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCC-----SCEECTTCCCH
T ss_pred HhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCCH
Confidence 6889998888886654111 123467889999999999999999999999998 899 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----ccccCCccHHHHHHHH
Q 048145 73 VHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----VNQTAAISILSSKMYI 148 (578)
Q Consensus 73 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~g~t~Lh~A~~~ 148 (578)
||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++. ..+.+|.||||+|+
T Consensus 96 L~~A~~~g~~~~v~~Ll~~ga--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~-- 165 (285)
T 3d9h_A 96 LHEACLGGHLSCVKILLKHGA--------QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA-- 165 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC--------CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHH--
T ss_pred HHHHHHCCcHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH--
Confidence 999999999999999999999 8999999999999999999999999999998 34567999999999
Q ss_pred HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145 149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI 228 (578)
Q Consensus 149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (578)
..|+ .+++++|+++|++++..
T Consensus 166 ------~~g~----------------~~~v~~Ll~~g~~~~~~------------------------------------- 186 (285)
T 3d9h_A 166 ------RRGH----------------VECVNSLIAYGGNIDHK------------------------------------- 186 (285)
T ss_dssp ------HHTC----------------HHHHHHHHHTTCCTTCC-------------------------------------
T ss_pred ------HcCC----------------HHHHHHHHHCCCCCCCc-------------------------------------
Confidence 6677 89999999998876433
Q ss_pred HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145 229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR 308 (578)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g 308 (578)
|..|.| |||+|+..|+.+++++|++ .+++++. |..|+||||+|+++|
T Consensus 187 ------------------------d~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~ 233 (285)
T 3d9h_A 187 ------------------------ISHLGT-------PLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTA 233 (285)
T ss_dssp ------------------------BTTTBC-------HHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTT
T ss_pred ------------------------CCCCCC-------HHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcC
Confidence 235566 9999999999999999998 7888985 899999999999999
Q ss_pred cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145 309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK 346 (578)
Q Consensus 309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~ 346 (578)
+.+++++|+ +.|++++.+|.+|+||||+|+...
T Consensus 234 ~~~~v~~Ll-----~~gad~~~~d~~g~t~l~~A~~~~ 266 (285)
T 3d9h_A 234 SEELACLLM-----DFGADTQAKNAEGKRPVELVPPES 266 (285)
T ss_dssp CHHHHHHHH-----HTTCCTTCCCTTSCCGGGGSCTTS
T ss_pred CHHHHHHHH-----HCCCCCCCcCCCCCCHHHHhcCcc
Confidence 999999999 567789999999999999999543
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.5e-38 Score=319.89 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=122.3
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||.+|+.+.++.++.+ .+...+..|..|.||||+|+..|+.++|++|+++ +++ ++.+|..|+||||+|+..|
T Consensus 31 A~~~g~~~~v~~ll~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~g 102 (351)
T 3utm_A 31 AARSGNEEKLMALLTP--LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GAD-----VHAKDKGGLVPLHNACSYG 102 (351)
T ss_dssp HHHHTCHHHHHHHCCT--TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHh--cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCccCCCCCcHHHHHHHCC
Confidence 5789999999999987 4556678899999999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHH
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMY 147 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~ 147 (578)
+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|+++ ..+..|.+|+++|+.
T Consensus 103 ~~~iv~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~ 166 (351)
T 3utm_A 103 HYEVTELLLKHGA--------CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166 (351)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred CHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhh
Confidence 9999999999999 8999999999999999999999999999998 567899999999874
No 4
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-38 Score=329.92 Aligned_cols=284 Identities=18% Similarity=0.187 Sum_probs=224.4
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.++.+++. ....+..+..|.||||+|+..|+.++|+.|+++ +.+ .+..+..|.||||+|+..|
T Consensus 87 A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 87 AARIGHTNMVKLLLEN---NANPNLATTAGHTPLHIAAREGHVETVLALLEK-EAS-----QACMTKKGFTPLHVAAKYG 157 (437)
T ss_dssp HHHHTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCCCTTSCCHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhC---CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCC-----CcCCCCCCCCHHHHHHHcC
Confidence 5678888866666665 444567788899999999999999999999998 777 8888899999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHH-----
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAI----- 150 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~----- 150 (578)
+.+++++|+++|+ +++..+..|.||||+|+.+|+.+++++|++. ..+.+|.||||+|+..+.
T Consensus 158 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 158 KVRVAELLLERDA--------HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhCCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999998 7888899999999999999999999999987 456788999999985321
Q ss_pred --HH-------HhccCc-hHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145 151 --WR-------QVIQGC-PAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA 220 (578)
Q Consensus 151 --~~-------~~~~G~-~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (578)
+. ....|. |++.+...+. .+++++|+++|++++.. +..|.|++|+|+ ..+.
T Consensus 230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~------~~~v~~Ll~~~~~~~~~---~~~g~t~L~~A~----------~~~~ 290 (437)
T 1n11_A 230 SLLQYGGSANAESVQGVTPLHLAAQEGH------AEMVALLLSKQANGNLG---NKSGLTPLHLVA----------QEGH 290 (437)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTC------HHHHHHHHTTTCCTTCC---CTTCCCHHHHHH----------HHTC
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHCCC------HHHHHHHHhcCCCCCCC---CCCCCCHHHHHH----------HcCC
Confidence 10 011222 5555555444 67777777777766544 335667777764 3344
Q ss_pred hhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145 221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI 300 (578)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~ 300 (578)
.+.++.++.. ..+++..|..|.| |||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 291 ~~~~~~Ll~~---------------g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~ 347 (437)
T 1n11_A 291 VPVADVLIKH---------------GVMVDATTRMGYT-------PLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSP 347 (437)
T ss_dssp HHHHHHHHHH---------------TCCTTCCCSSCCC-------HHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred HHHHHHHHhC---------------CccCCCCCCCCCC-------HHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCH
Confidence 5555655432 2233444445566 9999999999999999998 899999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
||+|+++|+.+++++|+ +.|++++.+|.+|+||||+|++.|+.
T Consensus 348 L~~A~~~g~~~iv~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~g~~ 390 (437)
T 1n11_A 348 LHQAAQQGHTDIVTLLL-----KNGASPNEVSSDGTTPLAIAKRLGYI 390 (437)
T ss_dssp HHHHHHTTCHHHHHHHH-----HTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred HHHHHHCChHHHHHHHH-----HCcCCCCCCCCCCCCHHHHHHHcCcH
Confidence 99999999999999999 56778999999999999999999864
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=307.30 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=187.4
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK 108 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~ 108 (578)
+|+||||+||..|+.++|++|+++ +.+ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~ 67 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWA-----VNIITADHVSPLHEACLGGHLSCVKILLKHGA--------QVNGVTA 67 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCC-----SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--------CCCCCCC
Confidence 689999999999999999999999 899 99999999999999999999999999999999 8999999
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHh----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145 109 LGETPLYRAASVGKIEALRYFAEQ----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK 184 (578)
Q Consensus 109 ~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~ 184 (578)
.|.||||+|+..|+.+++++|++. ..+.+|.||||+|+ ..|+ .+++++|+++
T Consensus 68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~--------~~~~----------------~~~v~~Ll~~ 123 (261)
T 2xai_A 68 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA--------RRGH----------------VECVNSLIAY 123 (261)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHH--------HTTC----------------HHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH--------HcCc----------------HHHHHHHHHc
Confidence 999999999999999999999998 34567999999999 7788 8999999999
Q ss_pred cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccch
Q 048145 185 RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTM 264 (578)
Q Consensus 185 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~ 264 (578)
|++++.. |..|.|
T Consensus 124 g~~~~~~-------------------------------------------------------------~~~g~t------ 136 (261)
T 2xai_A 124 GGNIDHK-------------------------------------------------------------ISHLGT------ 136 (261)
T ss_dssp TCCTTCC-------------------------------------------------------------BTTTBC------
T ss_pred CCCCCcC-------------------------------------------------------------CCCCCC------
Confidence 8876543 235566
Q ss_pred hHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHh
Q 048145 265 RILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVAD 344 (578)
Q Consensus 265 ~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~ 344 (578)
|||+|+..|+.+++++|++ .+++++. |..|+||||+|+++|+.+++++|+ +.|++++.+|.+|+||||+|+.
T Consensus 137 -~L~~A~~~~~~~~v~~Ll~-~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll-----~~gad~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 137 -PLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVARTASEELACLLM-----DFGADTQAKNAEGKRPVELVPP 208 (261)
T ss_dssp -HHHHHHHTTCHHHHHHHHH-HTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSCCGGGGSCT
T ss_pred -HHHHHHHhCCHHHHHHHHH-cCCCCCC-CCCCCChHHHHHHcCCHHHHHHHH-----HcCCCCCCcCCCCCChhhhccc
Confidence 9999999999999999998 7888885 899999999999999999999999 5677899999999999999996
Q ss_pred cc
Q 048145 345 MK 346 (578)
Q Consensus 345 ~~ 346 (578)
.+
T Consensus 209 ~~ 210 (261)
T 2xai_A 209 ES 210 (261)
T ss_dssp TC
T ss_pred cc
Confidence 65
No 6
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7.4e-38 Score=300.35 Aligned_cols=214 Identities=19% Similarity=0.185 Sum_probs=197.4
Q ss_pred hccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCC
Q 048145 23 LGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNP 102 (578)
Q Consensus 23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~ 102 (578)
.+..|.+|.||||+|+..|+.+++++|+++ +.+ ++.+|..|.||||+|+..|+.+++++|+++|+ +
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~ 69 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA--------L 69 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--------C
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCC-----cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC--------C
Confidence 456788999999999999999999999999 999 99999999999999999999999999999999 8
Q ss_pred cccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHH
Q 048145 103 LVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVA 176 (578)
Q Consensus 103 ~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 176 (578)
++.++..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .+
T Consensus 70 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~ 125 (237)
T 3b7b_A 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT--------EYKH----------------VD 125 (237)
T ss_dssp CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH--------HTTC----------------HH
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH--------HcCC----------------HH
Confidence 899999999999999999999999999987 46688999999999 7777 89
Q ss_pred HHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccc
Q 048145 177 LVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKD 256 (578)
Q Consensus 177 ~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 256 (578)
++++|+++|++++.. +..|
T Consensus 126 ~~~~Ll~~g~~~~~~-------------------------------------------------------------~~~g 144 (237)
T 3b7b_A 126 LVKLLLSKGSDINIR-------------------------------------------------------------DNEE 144 (237)
T ss_dssp HHHHHHHTTCCTTCC-------------------------------------------------------------CTTS
T ss_pred HHHHHHHCCCCCCcc-------------------------------------------------------------CCCC
Confidence 999999998876433 2355
Q ss_pred ccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCC
Q 048145 257 MTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGY 336 (578)
Q Consensus 257 ~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~ 336 (578)
.| |||+|+..|+.+++++|++ .+.+++..|..|+||||+|+++|+.+++++|+ +.|++++.+|++|+
T Consensus 145 ~t-------~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~gad~~~~d~~g~ 211 (237)
T 3b7b_A 145 NI-------CLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFL-----SRDSDVTLKNKEGE 211 (237)
T ss_dssp CC-------HHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-----TTTCCTTCCCTTSC
T ss_pred CC-------HHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH-----HcCCCCCccCCCCC
Confidence 66 9999999999999999998 89999999999999999999999999999999 56778999999999
Q ss_pred chhhHHHhcccc
Q 048145 337 TILHQVADMKYY 348 (578)
Q Consensus 337 T~LhlA~~~~~~ 348 (578)
||||+|+..++.
T Consensus 212 t~l~~A~~~~~~ 223 (237)
T 3b7b_A 212 TPLQCASLNSQV 223 (237)
T ss_dssp CHHHHSCTTCHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999854
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-37 Score=305.91 Aligned_cols=235 Identities=17% Similarity=0.199 Sum_probs=206.1
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.++.+++. ...+....+..|.||||+|+..|+.++|++|+++ +.+ ++.+|.+|.||||+|+..|
T Consensus 12 A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GAD-----PVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CcccCCCCCCHHHHHHHcC
Confidence 5789999988888877 3444444478899999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cc----------ccCCccHHHHH
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VN----------QTAAISILSSK 145 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~----------~~~g~t~Lh~A 145 (578)
+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|++. .. +..|.||||+|
T Consensus 84 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A 155 (285)
T 1wdy_A 84 SVKLLKLFLSKGA--------DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155 (285)
T ss_dssp CHHHHHHHHHTTC--------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred CHHHHHHHHHcCC--------CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH
Confidence 9999999999999 8999999999999999999999999999998 12 67799999999
Q ss_pred HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccchhhHH
Q 048145 146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWV 224 (578)
Q Consensus 146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 224 (578)
+ ..|+ .+++++|+++ |.+++..
T Consensus 156 ~--------~~~~----------------~~~v~~Ll~~~~~~~~~~--------------------------------- 178 (285)
T 1wdy_A 156 A--------EKGH----------------VEVLKILLDEMGADVNAC--------------------------------- 178 (285)
T ss_dssp H--------HHTC----------------HHHHHHHHHTSCCCTTCC---------------------------------
T ss_pred H--------HcCC----------------HHHHHHHHHhcCCCCCcc---------------------------------
Confidence 9 6677 8999999986 7665433
Q ss_pred HHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCH----HHHHHHHHHHCCCcccccccCCChH
Q 048145 225 ELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI----IEILEEIRHKYPQTLDNVNEKGQNI 300 (578)
Q Consensus 225 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~----~~iv~~Ll~~~~~~i~~~d~~G~t~ 300 (578)
|..|.| |||+|+..|+ .+++++|++ .|++++.+|..|+||
T Consensus 179 ----------------------------~~~g~t-------~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 179 ----------------------------DNMGRN-------ALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTP 222 (285)
T ss_dssp ----------------------------CTTSCC-------HHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCH
T ss_pred ----------------------------CCCCCC-------HHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcH
Confidence 235555 9999999998 899999998 889999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
||+|+++|+.+++++|+++ .+.+++.+|.+|+||||+|++.++.
T Consensus 223 L~~A~~~~~~~~v~~Ll~~----~g~~~~~~~~~g~t~l~~A~~~~~~ 266 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLAVELKLK 266 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHS----SSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHhc----cCCCccccCCCCCcHHHHHHHcCcH
Confidence 9999999999999999932 4567899999999999999998865
No 8
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.7e-38 Score=305.12 Aligned_cols=214 Identities=18% Similarity=0.171 Sum_probs=164.4
Q ss_pred hccCCCCCCcHHHHHHhcC-------------ChHHHHHHHccCCCchhhhhhh-ccCCCCChHHHHHHHcCCHHHHHHH
Q 048145 23 LGYRTFNGECAIHVAAAME-------------DPELIKKFLGRLPVEKRLEALM-QTDDNGNTAVHALATINNVDVAKTL 88 (578)
Q Consensus 23 ~~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~l~-~~d~~G~TpLh~Aa~~g~~~iv~~L 88 (578)
++.+|.+|.||||+|+..| +.++++.|++. +.+ ++ .+|..|+||||+|+..|+.+++++|
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~L 76 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GAS-----LHNQTDRTGETALHLAARYSRSDAAKRL 76 (253)
T ss_dssp -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCC-----cccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 4667899999999999988 89999999999 777 64 4589999999999999999999999
Q ss_pred HhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHH
Q 048145 89 VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIK 162 (578)
Q Consensus 89 l~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~ 162 (578)
+++|+ +++.+|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+
T Consensus 77 l~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~---- 136 (253)
T 1yyh_A 77 LEASA--------DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA--------RLAV---- 136 (253)
T ss_dssp HHTTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH--------HHTC----
T ss_pred HHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH--------HcCh----
Confidence 99999 8999999999999999999999999999987 45788999999999 6676
Q ss_pred HHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccccc
Q 048145 163 KIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQ 242 (578)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 242 (578)
.+++++|+++|++++..
T Consensus 137 ------------~~~v~~Ll~~g~~~~~~--------------------------------------------------- 153 (253)
T 1yyh_A 137 ------------EGMLEDLINSHADVNAV--------------------------------------------------- 153 (253)
T ss_dssp ------------SSHHHHHHHTTCCTTCB---------------------------------------------------
T ss_pred ------------HHHHHHHHHcCCCCCCc---------------------------------------------------
Confidence 89999999998876543
Q ss_pred CcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhch
Q 048145 243 YPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQL 322 (578)
Q Consensus 243 ~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~ 322 (578)
|..|.| |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+++|+.+++++|+
T Consensus 154 ----------d~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll----- 210 (253)
T 1yyh_A 154 ----------DDLGKS-------ALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL----- 210 (253)
T ss_dssp ----------CTTSCB-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-----
T ss_pred ----------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-----
Confidence 235666 9999999999999999998 89999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCchhhHHHhcccc
Q 048145 323 SLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 323 ~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
+.|++++.+|..|+||||+|++.|+.
T Consensus 211 ~~ga~~~~~d~~g~tpl~~A~~~g~~ 236 (253)
T 1yyh_A 211 DHFANRDITDHMDRLPRDIAQERMHH 236 (253)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HcCCCccccccCCCCHHHHHHHcCCH
Confidence 56778999999999999999999975
No 9
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.8e-37 Score=298.22 Aligned_cols=216 Identities=15% Similarity=0.140 Sum_probs=192.6
Q ss_pred hccCCCCCCcHHHHHHhcCChHHHHHHHcc---CCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145 23 LGYRTFNGECAIHVAAAMEDPELIKKFLGR---LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD 99 (578)
Q Consensus 23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~ 99 (578)
.+..|.+|+||||+|+..|+.++|++|++. .+.+ ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------ 70 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA------ 70 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCcccccCCCHHHHHHHcCCHHHHHHHHHcCC------
Confidence 356789999999999999999999999982 3778 99999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh---------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhh
Q 048145 100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ---------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQI 170 (578)
Q Consensus 100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~---------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~ 170 (578)
+++.+|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+
T Consensus 71 --~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--------~~~~------------ 128 (241)
T 1k1a_A 71 --SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV--------NTEC------------ 128 (241)
T ss_dssp --CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH--------HHTC------------
T ss_pred --CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH--------HcCC------------
Confidence 8899999999999999999999999999987 34678999999999 6677
Q ss_pred hHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccc
Q 048145 171 HKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQE 250 (578)
Q Consensus 171 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 250 (578)
.+++++|+++|++++..+
T Consensus 129 ----~~~~~~Ll~~g~~~~~~~---------------------------------------------------------- 146 (241)
T 1k1a_A 129 ----QETVQLLLERGADIDAVD---------------------------------------------------------- 146 (241)
T ss_dssp ----HHHHHHHHHTTCCTTCCC----------------------------------------------------------
T ss_pred ----HHHHHHHHHcCCCccccc----------------------------------------------------------
Confidence 899999999988765431
Q ss_pred ccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhc
Q 048145 251 NDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALK 330 (578)
Q Consensus 251 ~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 330 (578)
+..|.| |||+|++.|+.+++++|++ .|++++..|.+|+||||+|+.+|+.+++++|+ +.|++++.
T Consensus 147 --~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~ 211 (241)
T 1k1a_A 147 --IKSGRS-------PLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLV-----RSGADSSL 211 (241)
T ss_dssp --TTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-----HTTCCTTC
T ss_pred --ccCCCc-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-----hcCCCCCC
Confidence 024555 9999999999999999998 89999999999999999999999999999999 56778999
Q ss_pred ccCCCCchhhHHHhcccc
Q 048145 331 IDNEGYTILHQVADMKYY 348 (578)
Q Consensus 331 ~d~~G~T~LhlA~~~~~~ 348 (578)
+|..|+||||+|+..++.
T Consensus 212 ~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 212 KNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp CCTTSCCTTTTCSSHHHH
T ss_pred cCCCCCCHHHHHHhcCcH
Confidence 999999999999998854
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.1e-37 Score=305.14 Aligned_cols=217 Identities=18% Similarity=0.170 Sum_probs=174.6
Q ss_pred hccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCC
Q 048145 23 LGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNP 102 (578)
Q Consensus 23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~ 102 (578)
++.+|.+|+||||+|+..|+.++|++|++. +.+ ...++.+|..|+||||+||..|+.+++++|+++|+ +
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--------~ 70 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA--------G 70 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTT--SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------C
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCC--cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------C
Confidence 467899999999999999999999999987 443 22377899999999999999999999999999999 8
Q ss_pred cccCCCCCCCHHHHHHHcCcHHHHHHHHHh--------------------------------------------------
Q 048145 103 LVVENKLGETPLYRAASVGKIEALRYFAEQ-------------------------------------------------- 132 (578)
Q Consensus 103 ~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-------------------------------------------------- 132 (578)
++.+|..|.||||+|+..|+.+++++|++.
T Consensus 71 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (282)
T 1oy3_D 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150 (282)
T ss_dssp SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence 999999999999999999999999999974
Q ss_pred --ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCC
Q 048145 133 --VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGN 210 (578)
Q Consensus 133 --~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (578)
..+..|.||||+|+ ..|+ .+++++|+++|++++..+
T Consensus 151 ~~~~~~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~g~~~~~~~------------------ 188 (282)
T 1oy3_D 151 LEAENYDGHTPLHVAV--------IHKD----------------AEMVRLLRDAGADLNKPE------------------ 188 (282)
T ss_dssp TTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHHHTCCTTCCC------------------
T ss_pred CCCcCCCCcCHHHHHH--------HcCC----------------HHHHHHHHHcCCCCCCCC------------------
Confidence 13456777777777 5566 677777777776654330
Q ss_pred ccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcc
Q 048145 211 IEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTL 290 (578)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i 290 (578)
+..|.| |||+|++.|+.+++++|++ .|+++
T Consensus 189 ------------------------------------------~~~g~t-------pL~~A~~~~~~~~v~~Ll~-~gad~ 218 (282)
T 1oy3_D 189 ------------------------------------------PTCGRT-------PLHLAVEAQAASVLELLLK-AGADP 218 (282)
T ss_dssp ------------------------------------------TTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred ------------------------------------------CCCCcC-------HHHHHHHcCCHHHHHHHHH-cCCCC
Confidence 013566 9999999999999999998 79999
Q ss_pred cccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhccc
Q 048145 291 DNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKY 347 (578)
Q Consensus 291 ~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~ 347 (578)
+.+|..|+||||+|+++|+.+++++|+ +.|++++.+|.+|.|||++|.....
T Consensus 219 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 219 TARMYGGRTPLGSALLRPNPILARLLR-----AHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TCCCTTSCCHHHHHHTSSCHHHHHHHH-----HTTCCCCCCC---------------
T ss_pred cccccCCCCHHHHHHHcCCcHHHHHHH-----HcCCCcCcCCCcccccccccCCccc
Confidence 999999999999999999999999999 6778899999999999999987664
No 11
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.5e-36 Score=307.44 Aligned_cols=240 Identities=17% Similarity=0.211 Sum_probs=170.6
Q ss_pred CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL 109 (578)
Q Consensus 30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~ 109 (578)
|.||||+||..|+.++|++|+++ |++ ++.+|..+.+|+|.++..++.+++..+++.++ +++.+|..
T Consensus 59 g~TpLh~A~~~g~~~iv~~Ll~~-ga~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~ 124 (337)
T 4g8k_A 59 GWTPLHNAVQMSREDIVELLLRH-GAD-----PVLRKKNGATPFILAAIAGSVKLLKLFLSKGA--------DVNECDFY 124 (337)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC--------CTTCBCTT
T ss_pred CcCHHHHHHHcCCHHHHHHHHHc-CCc-----hhhhccCCCchhHHHHhcccchhhHHhhhccc--------hhhhhccC
Confidence 44444444444444444444444 444 44444444444444444444444444444444 78888999
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHh---------------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145 110 GETPLYRAASVGKIEALRYFAEQ---------------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA 174 (578)
Q Consensus 110 g~TpLh~A~~~g~~~iv~~Ll~~---------------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 174 (578)
|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+
T Consensus 125 g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~--------~~g~---------------- 180 (337)
T 4g8k_A 125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA--------EKGH---------------- 180 (337)
T ss_dssp CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH--------HHTC----------------
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH--------HCCC----------------
Confidence 99999999999999999999987 13457899999999 6777
Q ss_pred HHHHHHHHh-ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccc
Q 048145 175 VALVKMLVE-KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT 253 (578)
Q Consensus 175 ~~~v~~Ll~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 253 (578)
.+++++|++ .|++++.. +..|.+++++++.... .....++++.++.. +.+++..|
T Consensus 181 ~~~v~~LL~~~gad~n~~---d~~g~t~l~~~~~~~~------~~~~~~i~~lLl~~---------------gad~n~~d 236 (337)
T 4g8k_A 181 VEVLKILLDEMGADVNAC---DNMGRNALIHALLSSD------DSDVEAITHLLLDH---------------GADVNVRG 236 (337)
T ss_dssp HHHHHHHHHHSCCCTTCC---CTTSCCHHHHHHHHSC------TTTHHHHHHHHHHT---------------TCCTTCCC
T ss_pred HHHHHHHHhccCCCcCcc---CCCCCcHHHHHHHHcC------cccHHHHHHHHHHC---------------CCCCCCcC
Confidence 899999996 58888765 3356777766532211 11122344444322 23344445
Q ss_pred cccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccC
Q 048145 254 TKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN 333 (578)
Q Consensus 254 ~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~ 333 (578)
..|+| |||+|+..|+.++++.|++..+.+++.+|.+|+||||+|+++|+.++|++|+ +.|+++|
T Consensus 237 ~~g~t-------~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll-----~~GAd~n---- 300 (337)
T 4g8k_A 237 ERGKT-------PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC-----KRGASTD---- 300 (337)
T ss_dssp GGGCC-------HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-----TTSCSST----
T ss_pred CCCCC-------HHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH-----HCCCCCC----
Confidence 56666 9999999999999999998779999999999999999999999999999999 5566666
Q ss_pred CCCchhhHHHhcccc
Q 048145 334 EGYTILHQVADMKYY 348 (578)
Q Consensus 334 ~G~T~LhlA~~~~~~ 348 (578)
+.||||+|+..++.
T Consensus 301 -~~~~L~~A~~~~~~ 314 (337)
T 4g8k_A 301 -CGDLVMTARRNYDH 314 (337)
T ss_dssp -TCCHHHHHHHTTCH
T ss_pred -CCCHHHHHHHcCCH
Confidence 45699999999875
No 12
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-36 Score=296.34 Aligned_cols=250 Identities=19% Similarity=0.219 Sum_probs=211.4
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN 107 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n 107 (578)
+|+||||.|++.|+.++|++|++. +.+ ++.+ +..|.||||+|+..|+.+++++|+++|+ +++.+|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~ 69 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEG-GAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA--------DPVLRK 69 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc-CCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------CCcccC
Confidence 578999999999999999999999 888 8887 7889999999999999999999999999 899999
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHH
Q 048145 108 KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLV 182 (578)
Q Consensus 108 ~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll 182 (578)
..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .+++++|+
T Consensus 70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~Ll 125 (285)
T 1wdy_A 70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------VYGK----------------VKALKFLY 125 (285)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHH--------HTTC----------------HHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHH--------HhCC----------------HHHHHHHH
Confidence 9999999999999999999999998 56788999999999 7787 89999999
Q ss_pred hccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccccccccc
Q 048145 183 EKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMR 262 (578)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~ 262 (578)
++|++++...... ......+..|.|
T Consensus 126 ~~g~~~~~~~~~~---------------------------------------------------~~~~~~~~~g~t---- 150 (285)
T 1wdy_A 126 KRGANVNLRRKTK---------------------------------------------------EDQERLRKGGAT---- 150 (285)
T ss_dssp HTTCCTTCCCCCC---------------------------------------------------HHHHHTTCCCCC----
T ss_pred HhCCCcccccccH---------------------------------------------------HHHHhhccCCCc----
Confidence 9998876541100 000111234555
Q ss_pred chhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCc----HHHHHHHHHhhchhhhhhhhcccCCCCch
Q 048145 263 TMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ----LEIFEIIKEKMQLSLAEWALKIDNEGYTI 338 (578)
Q Consensus 263 g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~ 338 (578)
|||+|+..|+.+++++|++..|.+++..|..|+||||.|+..++ .+++++|+ +.|++++.+|..|+||
T Consensus 151 ---~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll-----~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 151 ---ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL-----DHGADVNVRGERGKTP 222 (285)
T ss_dssp ---HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH-----HTTCCSSCCCTTSCCH
T ss_pred ---HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHH-----HcCCCCCCcCCCCCcH
Confidence 99999999999999999996799999999999999999999999 89999999 5677899999999999
Q ss_pred hhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCC-CccccccccCCCCChhhhhhhhh
Q 048145 339 LHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAP-PHYAMHRDKNKRMTANDLFDLTH 398 (578)
Q Consensus 339 LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~-~~~~~~~n~~~g~t~~~l~~~~~ 398 (578)
||+|+..++. +.++.++. .+......+.+|+||.+++.+..
T Consensus 223 L~~A~~~~~~-------------------~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~ 264 (285)
T 1wdy_A 223 LILAVEKKHL-------------------GLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264 (285)
T ss_dssp HHHHHHTTCH-------------------HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCH-------------------HHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence 9999999865 33444443 33333333349999999876543
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=296.81 Aligned_cols=244 Identities=12% Similarity=0.014 Sum_probs=181.1
Q ss_pred CCCCCCcHHHHHHhcCChHHHHHHHccCCCch-----hhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCC
Q 048145 26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEK-----RLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADK 100 (578)
Q Consensus 26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~ 100 (578)
-+..|.|+||+|+..|+.+.+..++...+.+. ..+.++.+|.+|+||||+||..|+.+++++|++.|+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~------- 83 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW------- 83 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-------
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-------
Confidence 46789999999999999877777654411100 011267789999999999999999999999999999
Q ss_pred CCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHH
Q 048145 101 NPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAV 175 (578)
Q Consensus 101 ~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 175 (578)
+++.+|..|.||||+|+..|+.+++++|++. ..+.+|.||||+|+ ..|+ .
T Consensus 84 -~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~--------~~~~----------------~ 138 (285)
T 3d9h_A 84 -AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC--------VSGS----------------W 138 (285)
T ss_dssp -CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH--------HHTC----------------H
T ss_pred -CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--------HcCH----------------H
Confidence 8999999999999999999999999999998 56789999999999 6677 8
Q ss_pred HHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccc
Q 048145 176 ALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTK 255 (578)
Q Consensus 176 ~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (578)
+++++|+++|++++.. ..
T Consensus 139 ~~v~~Ll~~g~~~~~~--------------------------------------------------------------~~ 156 (285)
T 3d9h_A 139 DCVNLLLQHGASVQPE--------------------------------------------------------------SD 156 (285)
T ss_dssp HHHHHHHHTTCCSSCS--------------------------------------------------------------CT
T ss_pred HHHHHHHHCCCCCCCC--------------------------------------------------------------CC
Confidence 9999999988765422 13
Q ss_pred cccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC
Q 048145 256 DMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG 335 (578)
Q Consensus 256 g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G 335 (578)
|.| |||+|+..|+.+++++|++ .+.+++..|.+|+||||+|+.+|+.+++++|+ +.|++++. |..|
T Consensus 157 g~t-------~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~-~~~g 222 (285)
T 3d9h_A 157 LAS-------PIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLL-----ESGADVNQ-GKGQ 222 (285)
T ss_dssp TSC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH-----HTTCCTTC-CBTT
T ss_pred CCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-----HCCCCCCC-CCCC
Confidence 555 9999999999999999998 88999999999999999999999999999999 45667884 9999
Q ss_pred CchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhh
Q 048145 336 YTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDL 396 (578)
Q Consensus 336 ~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~ 396 (578)
+||||+|+..++. +.++.++..+......+.+|+||.+++.+
T Consensus 223 ~t~L~~A~~~~~~-------------------~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 223 DSPLHAVVRTASE-------------------ELACLLMDFGADTQAKNAEGKRPVELVPP 264 (285)
T ss_dssp BCHHHHHHHTTCH-------------------HHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred CCHHHHHHHcCCH-------------------HHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence 9999999999865 33444444444444444499999999873
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.5e-36 Score=285.64 Aligned_cols=211 Identities=17% Similarity=0.142 Sum_probs=191.4
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145 27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE 106 (578)
Q Consensus 27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~ 106 (578)
+..++||||.|++.|+.+.++.|++..+.. ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~ 69 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSL-----ATRTDQDSRTALHWACSAGHTEIVEFLLQLGV--------PVNDK 69 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG-----GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CSCCC
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhh-----hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC--------CCCCc
Confidence 346899999999999999999999985555 78889999999999999999999999999999 89999
Q ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHH
Q 048145 107 NKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKML 181 (578)
Q Consensus 107 n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~L 181 (578)
|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .+++++|
T Consensus 70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~L 125 (231)
T 3aji_A 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA--------SKNR----------------HEIAVML 125 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHH
T ss_pred CCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--------HcCC----------------HHHHHHH
Confidence 99999999999999999999999998 56788999999999 7777 8999999
Q ss_pred HhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccc
Q 048145 182 VEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSM 261 (578)
Q Consensus 182 l~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~ 261 (578)
+++|.+++.. +..|.|
T Consensus 126 l~~g~~~~~~-------------------------------------------------------------~~~g~t--- 141 (231)
T 3aji_A 126 LEGGANPDAK-------------------------------------------------------------DHYDAT--- 141 (231)
T ss_dssp HHTTCCTTCC-------------------------------------------------------------CTTSCC---
T ss_pred HHcCCCCCCc-------------------------------------------------------------CCCCCc---
Confidence 9988776433 225566
Q ss_pred cchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhH
Q 048145 262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQ 341 (578)
Q Consensus 262 ~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lhl 341 (578)
|||+|+..|+.+++++|++ .+++++.+|.+|+||||+|+.+|+.+++++|+ +.|++++.+|..|+||||+
T Consensus 142 ----~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~ 211 (231)
T 3aji_A 142 ----AMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLV-----TQGASIYIENKEEKTPLQV 211 (231)
T ss_dssp ----HHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-----HTTCCSCCCCTTSCCHHHH
T ss_pred ----HHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHH-----HCCCCCCCCCCCCCCHHHH
Confidence 9999999999999999998 89999999999999999999999999999999 5677899999999999999
Q ss_pred HHhcccc
Q 048145 342 VADMKYY 348 (578)
Q Consensus 342 A~~~~~~ 348 (578)
|+..++.
T Consensus 212 A~~~~~~ 218 (231)
T 3aji_A 212 AKGGLGL 218 (231)
T ss_dssp SCHHHHH
T ss_pred HHhhHHH
Confidence 9877643
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-36 Score=310.24 Aligned_cols=222 Identities=15% Similarity=0.116 Sum_probs=178.2
Q ss_pred ccCC-CCCCcHHHHHHhcCChHHHHHHH--------ccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCC
Q 048145 24 GYRT-FNGECAIHVAAAMEDPELIKKFL--------GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQ 94 (578)
Q Consensus 24 ~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~ 94 (578)
+..| ..|+||||+||..|+.++|++|+ +. +++ ++.+|.+|+||||+|+..|+.++|++|+++|+
T Consensus 118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~-ga~-----vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga- 190 (373)
T 2fo1_E 118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA-GAD-----VNAMDCDENTPLMLAVLARRRRLVAYLMKAGA- 190 (373)
T ss_dssp TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT-CCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc-CCC-----CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC-
Confidence 4445 67888888888888887777766 44 777 88888888888888888888888888888887
Q ss_pred CCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh--------ccccCCccHHHHHHHHHHHHHhccC---chHHHH
Q 048145 95 SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ--------VNQTAAISILSSKMYIAIWRQVIQG---CPAIKK 163 (578)
Q Consensus 95 ~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~--------~~~~~g~t~Lh~A~~~~~~~~~~~G---~~~~~~ 163 (578)
+++.+|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..| +
T Consensus 191 -------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~--------~~~~~~~----- 250 (373)
T 2fo1_E 191 -------DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA--------HNEGRDQ----- 250 (373)
T ss_dssp -------CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH--------HSCSTTH-----
T ss_pred -------CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH--------HhCCcch-----
Confidence 7778888888888888888888888888764 35677888888887 444 4
Q ss_pred HHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccC
Q 048145 164 IWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQY 243 (578)
Q Consensus 164 ~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 243 (578)
.+++++|+++|++++....
T Consensus 251 -----------~~~v~~Ll~~g~~~~~~~~-------------------------------------------------- 269 (373)
T 2fo1_E 251 -----------VASAKLLVEKGAKVDYDGA-------------------------------------------------- 269 (373)
T ss_dssp -----------HHHHHHHHHHTCCSSCCSG--------------------------------------------------
T ss_pred -----------HHHHHHHHHCCCCcccccc--------------------------------------------------
Confidence 7788888888777654310
Q ss_pred cccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchh
Q 048145 244 PQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLS 323 (578)
Q Consensus 244 ~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 323 (578)
...+..|..|.| |||+|+..|+.+++++|++..+++++.+|.+|+||||+|+.+|+.+++++|+ +
T Consensus 270 ---~~~~~~d~~g~t-------~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll-----~ 334 (373)
T 2fo1_E 270 ---ARKDSEKYKGRT-------ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-----Q 334 (373)
T ss_dssp ---GGTSSSSCCCCC-------THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-----H
T ss_pred ---cccCcccccCCC-------HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-----H
Confidence 001122335555 9999999999999999999788999999999999999999999999999999 5
Q ss_pred hhhhhhcccCCCCchhhHHHhcccc
Q 048145 324 LAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 324 ~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
.|++++.+|..|+||||+|+..|+.
T Consensus 335 ~gad~~~~d~~g~t~l~~A~~~g~~ 359 (373)
T 2fo1_E 335 QGASVEAVDATDHTARQLAQANNHH 359 (373)
T ss_dssp TTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred cCCCccCCCCCCCCHHHHHHHcCCH
Confidence 6778999999999999999999975
No 16
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.7e-36 Score=283.72 Aligned_cols=210 Identities=16% Similarity=0.166 Sum_probs=184.0
Q ss_pred CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc-CCC
Q 048145 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV-ENK 108 (578)
Q Consensus 30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~-~n~ 108 (578)
|+||||.|+..|+.++|+.|++. +.+ ..+.+|.+|+||||+|+..|+.+++++|+++|++ .+++. .+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~-~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~~~ 70 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHS-KPS----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN------VNLDDYPDD 70 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHH-CGG----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT------CCGGGCCCT
T ss_pred CccHHHHHHHhCCHHHHHHHHhc-Ccc----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc------ccccccCCC
Confidence 78999999999999999999999 544 1455899999999999999999999999999941 15555 889
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHh-------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHH
Q 048145 109 LGETPLYRAASVGKIEALRYFAEQ-------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKML 181 (578)
Q Consensus 109 ~g~TpLh~A~~~g~~~iv~~Ll~~-------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~L 181 (578)
.|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .+++++|
T Consensus 71 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~L 126 (228)
T 2dzn_A 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--------GKKW----------------FEVSQFL 126 (228)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHH--------HTTC----------------HHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHH--------HcCC----------------HhHHHHH
Confidence 999999999999999999999986 45678999999999 7777 8999999
Q ss_pred HhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccc
Q 048145 182 VEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSM 261 (578)
Q Consensus 182 l~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~ 261 (578)
+++|++++.. |..|.|
T Consensus 127 l~~g~~~~~~-------------------------------------------------------------~~~g~t--- 142 (228)
T 2dzn_A 127 IENGASVRIK-------------------------------------------------------------DKFNQI--- 142 (228)
T ss_dssp HHTTCCSCCC-------------------------------------------------------------CTTSCC---
T ss_pred HHcCCCcccc-------------------------------------------------------------CCCCCC---
Confidence 9998876543 235566
Q ss_pred cchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhH
Q 048145 262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQ 341 (578)
Q Consensus 262 ~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lhl 341 (578)
|||+|+..|+.+++++|++..+++++.+|.+|+||||+|+..|+.+++++|+++ .|++++.+|.+|+||||+
T Consensus 143 ----~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----~ga~~~~~~~~g~t~l~~ 214 (228)
T 2dzn_A 143 ----PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK----YGAEYDLVDNKGAKAEDV 214 (228)
T ss_dssp ----HHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH----HCCCSCCBCTTSCBGGGG
T ss_pred ----HHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHh----cCCCCCccCCCCCcHHHH
Confidence 999999999999999999944499999999999999999999999999999943 466799999999999999
Q ss_pred HHhcc
Q 048145 342 VADMK 346 (578)
Q Consensus 342 A~~~~ 346 (578)
|++.+
T Consensus 215 A~~~~ 219 (228)
T 2dzn_A 215 ALNEQ 219 (228)
T ss_dssp CSSTT
T ss_pred HHHHH
Confidence 98654
No 17
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=297.26 Aligned_cols=216 Identities=16% Similarity=0.174 Sum_probs=163.3
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCch---hhhhhhccCCCCChHHHHHHHcCCH-HHHHHHHhhcCCCCCCC
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEK---RLEALMQTDDNGNTAVHALATINNV-DVAKTLVEFSKQSNDAD 99 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~---~~~~l~~~d~~G~TpLh~Aa~~g~~-~iv~~Ll~~g~~~~~~~ 99 (578)
..+|..+.||||.||..|+.++|++|++. +.+. ....++..|..|.||||.|+..++. ++++.|++.|+
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~-~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga------ 77 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL------ 77 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTC-C----------------------------------------CCC------
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHC-CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC------
Confidence 34677889999999999999999999997 4431 1223567788999999999988876 48999999999
Q ss_pred CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145 100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA 174 (578)
Q Consensus 100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 174 (578)
+++.+|.+|.||||+|+.+|+.+++++|++. ..+.+|.||+|+|+ ..|+
T Consensus 78 --dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~--------~~~~---------------- 131 (269)
T 4b93_B 78 --GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC--------QQGH---------------- 131 (269)
T ss_dssp --CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHH--------HHTC----------------
T ss_pred --CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccc--------ccCh----------------
Confidence 8999999999999999999999999999998 56789999999999 6666
Q ss_pred HHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccc
Q 048145 175 VALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTT 254 (578)
Q Consensus 175 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 254 (578)
.+++++|+++|++++.. |.
T Consensus 132 ~~~~~~Ll~~g~~~n~~-------------------------------------------------------------d~ 150 (269)
T 4b93_B 132 FQVVKCLLDSNAKPNKK-------------------------------------------------------------DL 150 (269)
T ss_dssp HHHHHHHHHTTCCSCCC-------------------------------------------------------------CT
T ss_pred HHHHHHHHHCCCCCCCC-------------------------------------------------------------CC
Confidence 89999999998876543 23
Q ss_pred ccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCC
Q 048145 255 KDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNE 334 (578)
Q Consensus 255 ~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~ 334 (578)
.|.| |||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+.+|+.+++++|+ +.|++++.+|++
T Consensus 151 ~g~T-------pL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll-----~~Gad~~~~d~~ 217 (269)
T 4b93_B 151 SGNT-------PLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLL-----LHGASVQVLNKR 217 (269)
T ss_dssp TCCC-------HHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-----HTTCCSCCCCTT
T ss_pred CCCC-------HHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHH-----HCCCCCCCcCCC
Confidence 5666 9999999999999999998 89999999999999999999999999999999 567889999999
Q ss_pred CCchhhHHHhcc
Q 048145 335 GYTILHQVADMK 346 (578)
Q Consensus 335 G~T~LhlA~~~~ 346 (578)
|+||||+|++++
T Consensus 218 G~TpL~~A~~~~ 229 (269)
T 4b93_B 218 QRTAVDCAEQNS 229 (269)
T ss_dssp SCCSGGGSCTTC
T ss_pred CCCHHHHHHhCC
Confidence 999999999876
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4e-36 Score=307.72 Aligned_cols=213 Identities=21% Similarity=0.146 Sum_probs=188.7
Q ss_pred hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCC
Q 048145 22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN 101 (578)
Q Consensus 22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~ 101 (578)
..+..|.+|.||||+||..|+.++|++|++. +++ ++.+|..|+||||+||..|+.++|++|+++|+
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-------- 77 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVS-----PTIQNRFGCTALHLACKFGCVDTAKYLASVGE-------- 77 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC--------
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC--------
Confidence 3456788899999999999999999999999 999 99999999999999999999999999999998
Q ss_pred CcccCCCCCCCHHHHHHHcCcHHHHHHHHHh---------c-----------------cccCCccHHHHHHHHHHHHHhc
Q 048145 102 PLVVENKLGETPLYRAASVGKIEALRYFAEQ---------V-----------------NQTAAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 102 ~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~---------~-----------------~~~~g~t~Lh~A~~~~~~~~~~ 155 (578)
+++ +..|.||||+|+..|+.+++++|++. . .+..|.||||+|+ .
T Consensus 78 ~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--------~ 147 (364)
T 3ljn_A 78 VHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV--------G 147 (364)
T ss_dssp CCC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHH--------H
T ss_pred Ccc--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHH--------H
Confidence 333 35799999999999999999999986 1 6678999999999 7
Q ss_pred cC--chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145 156 QG--CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG 233 (578)
Q Consensus 156 ~G--~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (578)
.| + .+++++|+++|++++..
T Consensus 148 ~g~~~----------------~~~v~~Ll~~ga~~~~~------------------------------------------ 169 (364)
T 3ljn_A 148 LGPEY----------------LEMIKILVQLGASPTAK------------------------------------------ 169 (364)
T ss_dssp SCGGG----------------HHHHHHHHHHTCCTTCC------------------------------------------
T ss_pred cCCch----------------HHHHHHHHHcCCCCccc------------------------------------------
Confidence 77 7 89999999998876543
Q ss_pred CccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCc-----ccccccCCChHHHHHHHhC
Q 048145 234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQT-----LDNVNEKGQNILHVAIMYR 308 (578)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~-----i~~~d~~G~t~Lh~A~~~g 308 (578)
|..|.| |||+|+..|+.+++++|++ .+++ ++..|..|+||||+|+.+|
T Consensus 170 -------------------d~~g~t-------~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g 222 (364)
T 3ljn_A 170 -------------------DKADET-------PLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILIN 222 (364)
T ss_dssp -------------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred -------------------CCCCCC-------HHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcC
Confidence 235566 9999999999999999998 5555 9999999999999999999
Q ss_pred cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
+.+++++|+ +.|++++.+|.+|+||||+|+..|+.
T Consensus 223 ~~~~v~~Ll-----~~gad~~~~d~~g~tpL~~A~~~g~~ 257 (364)
T 3ljn_A 223 WEDVAMRFV-----EMGIDVNMEDNEHTVPLYLSVRAAMV 257 (364)
T ss_dssp CHHHHHHHH-----TTTCCTTCCCTTSCCHHHHHHHTCCH
T ss_pred CHHHHHHHH-----HcCCCCCCCCCCCCCHHHHHHHhChH
Confidence 999999999 56778999999999999999999875
No 19
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9e-36 Score=290.41 Aligned_cols=234 Identities=13% Similarity=0.066 Sum_probs=203.5
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.+++. +...+..|.+|.||||+|+..|+.++|++|+++ +++ ++.+|.+|+||||+|+..|
T Consensus 10 A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 10 AAIHGHQLSLRNLISQ---GWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQ-----VNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp HHHHTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcC
Confidence 5788999988888877 345678899999999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~ 155 (578)
+.+++++|+++|+ +++. +..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ .
T Consensus 81 ~~~~v~~Ll~~g~--------~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--------~ 143 (261)
T 2xai_A 81 SWDCVNLLLQHGA--------SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC--------E 143 (261)
T ss_dssp CHHHHHHHHHTTC--------CSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH--------H
T ss_pred CHHHHHHHHHCCC--------CCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHH--------H
Confidence 9999999999999 5654 45599999999999999999999998 56789999999999 7
Q ss_pred cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT 235 (578)
Q Consensus 156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (578)
.|+ .+++++|+++|++++.
T Consensus 144 ~~~----------------~~~v~~Ll~~g~~~~~--------------------------------------------- 162 (261)
T 2xai_A 144 NQQ----------------RACVKKLLESGADVNQ--------------------------------------------- 162 (261)
T ss_dssp TTC----------------HHHHHHHHHHTCCTTC---------------------------------------------
T ss_pred hCC----------------HHHHHHHHHcCCCCCC---------------------------------------------
Confidence 787 8999999999887642
Q ss_pred cccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHH
Q 048145 236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEI 315 (578)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~ 315 (578)
+..|.| |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+.++ +++++
T Consensus 163 -----------------~~~g~t-------~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~--~~~~~ 215 (261)
T 2xai_A 163 -----------------GKGQDS-------PLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPES--PLAQL 215 (261)
T ss_dssp -----------------CBTTBC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTC--THHHH
T ss_pred -----------------CCCCCC-------hHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhccccc--cHHHH
Confidence 125566 9999999999999999998 89999999999999999999655 58899
Q ss_pred HHHhhc---hhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 316 IKEKMQ---LSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 316 Ll~~~~---~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
|++... +....+++.+|..|+||+|+|++...+
T Consensus 216 ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p 251 (261)
T 2xai_A 216 FLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLP 251 (261)
T ss_dssp HHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSC
T ss_pred HHhccCCccHHHHHHHHHHHHhchhccccCcccCCc
Confidence 984322 123457888999999999999987643
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1e-34 Score=293.96 Aligned_cols=248 Identities=17% Similarity=0.214 Sum_probs=209.4
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCC-CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145 27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDD-NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV 105 (578)
Q Consensus 27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~ 105 (578)
+.+|+||||.|++.|+.++|++||++ |++ ++.+|. .|+||||+||+.|+.++|++|+++|+ +++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~-Gad-----vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga--------~~~~ 87 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG-GAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA--------DPVL 87 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTC
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC-CCC-----CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC--------chhh
Confidence 34589999999999999999999999 999 998876 59999999999999999999999999 8999
Q ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHH
Q 048145 106 ENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKM 180 (578)
Q Consensus 106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~ 180 (578)
++..+.+|++.++..++.+++..+++. ..|..|.||||+|+ ..|+ .+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~--------~~~~----------------~~~~~~ 143 (337)
T 4g8k_A 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------VYGK----------------VKALKF 143 (337)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHH--------HTTC----------------HHHHHH
T ss_pred hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHH--------HcCc----------------HHHHHH
Confidence 999999999999999999999999987 57889999999999 7788 899999
Q ss_pred HHhccccccccc-------cCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccc
Q 048145 181 LVEKRIDDCATH-------EKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT 253 (578)
Q Consensus 181 Ll~~g~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 253 (578)
|+++|++++... .....|.||||+|+ ..++.++++.|+... +.+++..|
T Consensus 144 ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~----------~~g~~~~v~~LL~~~--------------gad~n~~d 199 (337)
T 4g8k_A 144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAA----------EKGHVEVLKILLDEM--------------GADVNACD 199 (337)
T ss_dssp HHHTTCCTTCCCCCC-----CTTCSCCHHHHHH----------HHTCHHHHHHHHHHS--------------CCCTTCCC
T ss_pred HHHcCCCcchhhccccccccccCCCCcHHHHHH----------HCCCHHHHHHHHhcc--------------CCCcCccC
Confidence 999999876542 22346789999884 445567777765321 12334445
Q ss_pred cccccccccchhHHHHHHhcCH----HHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhh
Q 048145 254 TKDMTSSMRTMRILLFAVSNGI----IEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWAL 329 (578)
Q Consensus 254 ~~g~t~~~~g~~pLh~Aa~~G~----~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 329 (578)
..|.| |+|.++..++ .+++++|++ .|++++.+|.+|+||||+|++.|+.+++++|++. .+.++|
T Consensus 200 ~~g~t-------~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~----~~~~vn 267 (337)
T 4g8k_A 200 NMGRN-------ALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EHIEIN 267 (337)
T ss_dssp TTSCC-------HHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS----TTCCTT
T ss_pred CCCCc-------HHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh----cCCccc
Confidence 56666 9998876433 467888887 8999999999999999999999999999999932 356799
Q ss_pred cccCCCCchhhHHHhcccc
Q 048145 330 KIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 330 ~~d~~G~T~LhlA~~~~~~ 348 (578)
.+|.+|+||||+|++.|+.
T Consensus 268 ~~d~~G~TpL~~A~~~g~~ 286 (337)
T 4g8k_A 268 DTDSDGKTALLLAVELKLK 286 (337)
T ss_dssp CBCTTSCBHHHHHHHTTCH
T ss_pred CcCCCCCCHHHHHHHcCCH
Confidence 9999999999999999975
No 21
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.7e-35 Score=279.04 Aligned_cols=208 Identities=19% Similarity=0.183 Sum_probs=191.8
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.++.+ .+...+..+..|.||||+|+..|+.++|++|++. +.+ ++.+|..|+||||+|+..|
T Consensus 13 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 13 LAYSGKLDELKERILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVP-----VNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHTCHHHHHHHHHH--CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCCCTTSCCHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh--chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence 5788999999999988 4556788899999999999999999999999999 888 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~ 155 (578)
+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ .
T Consensus 85 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--------~ 148 (231)
T 3aji_A 85 XDEIVKALLVKGA--------HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA--------A 148 (231)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------H
T ss_pred HHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH--------H
Confidence 9999999999999 8999999999999999999999999999997 56788999999999 6
Q ss_pred cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT 235 (578)
Q Consensus 156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (578)
.|+ .+++++|+++|++++..
T Consensus 149 ~~~----------------~~~v~~Ll~~g~~~~~~-------------------------------------------- 168 (231)
T 3aji_A 149 KGN----------------LKMVHILLFYKASTNIQ-------------------------------------------- 168 (231)
T ss_dssp HTC----------------HHHHHHHHHTTCCSCCC--------------------------------------------
T ss_pred cCC----------------HHHHHHHHhcCCCcccc--------------------------------------------
Confidence 677 89999999988876543
Q ss_pred cccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHH
Q 048145 236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEI 315 (578)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~ 315 (578)
|..|.| |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|++.++.+++++
T Consensus 169 -----------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l 223 (231)
T 3aji_A 169 -----------------DTEGNT-------PLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRL 223 (231)
T ss_dssp -----------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred -----------------CCCCCC-------HHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence 235666 9999999999999999998 899999999999999999999999999999
Q ss_pred HH
Q 048145 316 IK 317 (578)
Q Consensus 316 Ll 317 (578)
|.
T Consensus 224 L~ 225 (231)
T 3aji_A 224 AE 225 (231)
T ss_dssp HH
T ss_pred Hc
Confidence 98
No 22
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-35 Score=295.73 Aligned_cols=258 Identities=18% Similarity=0.173 Sum_probs=199.6
Q ss_pred cccCChHHHHHHHhcCCchh-------hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHH
Q 048145 2 ALKGDRQGFLRYFAQQTDEE-------LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVH 74 (578)
Q Consensus 2 a~~G~~~~~~~ll~~~~~~~-------~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh 74 (578)
|.+|..+.+..++.+ .... .....+..|.||||.||..|+.++|++|+++ +.+ ++.+|.+|.||||
T Consensus 6 a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~ 78 (299)
T 1s70_B 6 AKQKRNEQLKRWIGS-ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GAD-----INYANVDGLTALH 78 (299)
T ss_dssp HHHHHHHHHHHHHHT-TTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCC-----TTCBCTTCCBHHH
T ss_pred HHHHHHHHHHHHHcc-ccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCC-----CcccCCCCCCHHH
Confidence 566777888888877 2211 1122344678999999999999999999999 899 9999999999999
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHH
Q 048145 75 ALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIA 149 (578)
Q Consensus 75 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~ 149 (578)
+||..|+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|++. ..+..|.||||+|+
T Consensus 79 ~A~~~g~~~~v~~Ll~~ga--------~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--- 147 (299)
T 1s70_B 79 QACIDDNVDMVKFLVENGA--------NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE--- 147 (299)
T ss_dssp HHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---
T ss_pred HHHHcCCHHHHHHHHHCCC--------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH---
Confidence 9999999999999999999 8999999999999999999999999999998 56789999999998
Q ss_pred HHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145 150 IWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI 228 (578)
Q Consensus 150 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (578)
..|+ .++++.++.+ +.+++...... .+. .......+.
T Consensus 148 -----~~~~----------------~~~~~~ll~~~~~~~~~~~~~~---~~~------------------~~~~~~~~l 185 (299)
T 1s70_B 148 -----EEAM----------------EELLQNEVNRQGVDIEAARKEE---ERI------------------MLRDARQWL 185 (299)
T ss_dssp -----SHHH----------------HHHHHHHHHHHTCCHHHHHHHH---HHH------------------HHHHHHHHH
T ss_pred -----hcch----------------HHHHHHHHhhcCCCchhhhhhh---hhH------------------HHHHHHHHH
Confidence 4444 6667666653 33222110000 000 000000000
Q ss_pred HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145 229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR 308 (578)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g 308 (578)
... .......+..|.| |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+.+|
T Consensus 186 ~~~--------------~~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~ 243 (299)
T 1s70_B 186 NSG--------------HINDVRHAKSGGT-------ALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWG 243 (299)
T ss_dssp HHT--------------CCCCCCCTTTCCC-------HHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTT
T ss_pred hcc--------------CcchhhhcCCCCC-------HHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcC
Confidence 000 0000111234444 9999999999999999998 89999999999999999999999
Q ss_pred cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145 309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK 346 (578)
Q Consensus 309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~ 346 (578)
+.+++++|+ +.|++++.+|..|+||||+|++..
T Consensus 244 ~~~~v~~Ll-----~~gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 244 KEEACRILV-----ENLCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp CHHHHHHHH-----HTTCCTTCCCTTSCCTTTSCCSGG
T ss_pred CHHHHHHHH-----HcCCCCCCcCCCCCCHHHHHHHHH
Confidence 999999999 567789999999999999997643
No 23
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-34 Score=280.03 Aligned_cols=204 Identities=18% Similarity=0.174 Sum_probs=174.8
Q ss_pred ChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHH
Q 048145 6 DRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85 (578)
Q Consensus 6 ~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv 85 (578)
+.+.+..+++. +..+.+..|..|.||||+|+..|+.++|++|+++ +++ ++.+|..|+||||+|+..|+.+++
T Consensus 35 ~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v 106 (253)
T 1yyh_A 35 APAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SAD-----ANIQDNMGRTPLHAAVSADAQGVF 106 (253)
T ss_dssp -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred ChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHHHcCCHHHH
Confidence 77766666665 5566677789999999999999999999999999 999 999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchH
Q 048145 86 KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPA 160 (578)
Q Consensus 86 ~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~ 160 (578)
++|+++++ .+++.++..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+
T Consensus 107 ~~Ll~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--------~~~~-- 169 (253)
T 1yyh_A 107 QILIRNRA-------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA--------AVNN-- 169 (253)
T ss_dssp HHHHHSTT-------SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH--------HHTC--
T ss_pred HHHHHcCC-------CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--------HcCC--
Confidence 99999998 68899999999999999999999999999998 56788999999999 6677
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccc
Q 048145 161 IKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHV 240 (578)
Q Consensus 161 ~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 240 (578)
.+++++|+++|++++..
T Consensus 170 --------------~~~v~~Ll~~ga~~~~~------------------------------------------------- 186 (253)
T 1yyh_A 170 --------------VDAAVVLLKNGANKDMQ------------------------------------------------- 186 (253)
T ss_dssp --------------HHHHHHHHHTTCCTTCC-------------------------------------------------
T ss_pred --------------HHHHHHHHHcCCCCCCc-------------------------------------------------
Confidence 89999999998876543
Q ss_pred ccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 241 DQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 241 ~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|..|.| |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+++|+.+++++|.
T Consensus 187 ------------~~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 187 ------------NNREET-------PLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp ------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred ------------CCCCCC-------HHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 235666 9999999999999999998 89999999999999999999999999999998
No 24
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-34 Score=286.16 Aligned_cols=221 Identities=12% Similarity=0.128 Sum_probs=195.0
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
++.+++.+.+.++|.+ . ..+..|..|.||||+|+..|+.++|++|++. +++ ++.+| |+||||+|+..|
T Consensus 6 ~i~~~~~~~v~~lL~~-~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~--g~t~L~~A~~~g 73 (285)
T 3kea_A 6 RINTWKSKQLKSFLSS-K---DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GAL-----KNLLE--NEFPLHQAATLE 73 (285)
T ss_dssp TGGGCCHHHHHHHHHS-T---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGG-----GSCCT--TCCHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHh-C---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCC-----CCCCC--CCCHHHHHHHcC
Confidence 3567889999999998 3 2578899999999999999999999999999 888 88774 999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCC-ccHHHHHHHHHHHHHh
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAA-ISILSSKMYIAIWRQV 154 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g-~t~Lh~A~~~~~~~~~ 154 (578)
+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|++. ..+..| .||||+|+
T Consensus 74 ~~~~v~~Ll~~ga--------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~-------- 137 (285)
T 3kea_A 74 DTKIVKILLFSGL--------DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-------- 137 (285)
T ss_dssp SCHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH--------
T ss_pred CHHHHHHHHHCCC--------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--------
Confidence 9999999999999 8999999999999999999999999999998 567778 89999999
Q ss_pred ccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCC
Q 048145 155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGC 234 (578)
Q Consensus 155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (578)
..|+ .+++++|+++|++....
T Consensus 138 ~~~~----------------~~~v~~Ll~~g~~~~~~------------------------------------------- 158 (285)
T 3kea_A 138 MLND----------------VSIVSYFLSEIPSTFDL------------------------------------------- 158 (285)
T ss_dssp HTTC----------------HHHHHHHHTTSCTTCCC-------------------------------------------
T ss_pred HcCC----------------HHHHHHHHhCCCccccc-------------------------------------------
Confidence 7788 89999999987653111
Q ss_pred ccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH-HHHHHHhCcHHHH
Q 048145 235 TNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI-LHVAIMYRQLEIF 313 (578)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~-Lh~A~~~g~~~iv 313 (578)
.. |.||||+|+..|+.+++++|++ .|++++.+|..|+|| ||+|+++|+.+++
T Consensus 159 -------------------~~-------g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v 211 (285)
T 3kea_A 159 -------------------AI-------LLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEML 211 (285)
T ss_dssp -------------------ST-------HHHHHHHHHHTTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHH
T ss_pred -------------------cC-------CccHHHHHHHcChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHH
Confidence 13 4459999999999999999998 699999999999998 9999999999999
Q ss_pred HHHHHhhchhhhhhhhcccCCCCchhhHHHhccc
Q 048145 314 EIIKEKMQLSLAEWALKIDNEGYTILHQVADMKY 347 (578)
Q Consensus 314 ~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~ 347 (578)
++|+ +.|++++.+|. .|+..++
T Consensus 212 ~~Ll-----~~gad~~~~~~-------~a~~~~~ 233 (285)
T 3kea_A 212 QALF-----KYDINIYSANL-------ENVLLDD 233 (285)
T ss_dssp HHHT-----TSCBCSTTTTG-------GGGTTTC
T ss_pred HHHH-----HcCCCCCCCCh-------hhhhcCC
Confidence 9999 56777888883 4555554
No 25
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.4e-34 Score=284.95 Aligned_cols=254 Identities=15% Similarity=0.124 Sum_probs=177.9
Q ss_pred hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cccc
Q 048145 62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQT 136 (578)
Q Consensus 62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~ 136 (578)
++.+|.+|+||||+||+.|+.+++++|++.|++. ..++.+|..|.||||+|+..|+.+++++|+++ ..+.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 76 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-----EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 6788999999999999999999999999999811 12889999999999999999999999999998 5678
Q ss_pred CCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccC----------CCCCCchhhccc
Q 048145 137 AAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEK----------PTPGVTEISLGL 206 (578)
Q Consensus 137 ~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~----------~~~~~~~l~~~~ 206 (578)
.|.||||+|+ ..|+ .+++++|+++|++....... ...+.++++.+.
T Consensus 77 ~g~tpL~~A~--------~~~~----------------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (282)
T 1oy3_D 77 GGHTALHLAC--------RVRA----------------HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132 (282)
T ss_dssp TSCCHHHHHT--------TTTC----------------HHHHHHHSSSCCSSCCCC------------------------
T ss_pred CCCCHHHHHH--------HcCC----------------cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcc
Confidence 9999999999 7888 89999999998765432110 001111111110
Q ss_pred CCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHC
Q 048145 207 GKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKY 286 (578)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~ 286 (578)
. ................+++..+..|.| |||+|+..|+.+++++|++ .
T Consensus 133 ~------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~ 180 (282)
T 1oy3_D 133 Q------------------------PNPENEEEPRDEDWRLQLEAENYDGHT-------PLHVAVIHKDAEMVRLLRD-A 180 (282)
T ss_dssp -----------------------------------CCCGGGGTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHH-H
T ss_pred c------------------------cccchhhhhhhhhhhhcCCCcCCCCcC-------HHHHHHHcCCHHHHHHHHH-c
Confidence 0 000000011111222334444555666 9999999999999999998 7
Q ss_pred CCcccccccC-CChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHH
Q 048145 287 PQTLDNVNEK-GQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELE 365 (578)
Q Consensus 287 ~~~i~~~d~~-G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~ 365 (578)
|++++..+.. |+||||+|+++|+.+++++|+ +.|++++.+|..|+||||+|+..++.
T Consensus 181 g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-----~~gad~~~~d~~g~tpL~~A~~~~~~----------------- 238 (282)
T 1oy3_D 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLL-----KAGADPTARMYGGRTPLGSALLRPNP----------------- 238 (282)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHTSSCH-----------------
T ss_pred CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-----HcCCCCcccccCCCCHHHHHHHcCCc-----------------
Confidence 8899999865 999999999999999999999 56778999999999999999999865
Q ss_pred HHHHHHhhCCCccccccccCCCCChhhhhhhhhHH
Q 048145 366 WFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHED 400 (578)
Q Consensus 366 ~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~~~~ 400 (578)
+.++.++..+......+.+|+||.+.+......
T Consensus 239 --~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 239 --ILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp --HHHHHHHHTTCCCCCCC----------------
T ss_pred --HHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence 344555555554444444999999987655443
No 26
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=9e-35 Score=297.66 Aligned_cols=240 Identities=12% Similarity=0.058 Sum_probs=200.8
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.+++. ....+..|..|.||||+|+..|+.++|++|++. +.+ + .+.+|.||||+|+..|
T Consensus 27 Aa~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~--~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 27 AARKGQTDEVRRLIET---GVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEV-----H--SLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCC-----C--CCBTTBCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHc---CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCC-----c--cccCCCCHHHHHHHcC
Confidence 5788999988888876 345678899999999999999999999999999 765 3 3357999999999999
Q ss_pred CHHHHHHHHhh----cCCCCCCCCCCccc-----------------CCCCCCCHHHHHHHcC--cHHHHHHHHHh-----
Q 048145 81 NVDVAKTLVEF----SKQSNDADKNPLVV-----------------ENKLGETPLYRAASVG--KIEALRYFAEQ----- 132 (578)
Q Consensus 81 ~~~iv~~Ll~~----g~~~~~~~~~~~~~-----------------~n~~g~TpLh~A~~~g--~~~iv~~Ll~~----- 132 (578)
+.+++++|++. |. +++. +|..|.||||+|+..| +.+++++|++.
T Consensus 96 ~~~~v~~Ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQ--------MPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167 (364)
T ss_dssp CHHHHHHHHHHHHHHTC--------CHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred CHHHHHHHHHhccccCC--------CHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence 99999999999 55 4444 8889999999999999 99999999998
Q ss_pred ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcc
Q 048145 133 VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIE 212 (578)
Q Consensus 133 ~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (578)
..|..|.||||+|+ ..|+ .+++++|+++|++....
T Consensus 168 ~~d~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~g~~~~~~--------------------- 202 (364)
T 3ljn_A 168 AKDKADETPLMRAM--------EFRN----------------REALDLMMDTVPSKSSL--------------------- 202 (364)
T ss_dssp CCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHHHCSCSSSC---------------------
T ss_pred ccCCCCCCHHHHHH--------HcCC----------------HHHHHHHHhcccccccc---------------------
Confidence 56789999999999 7788 89999999998873211
Q ss_pred ccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccc
Q 048145 213 KKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDN 292 (578)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~ 292 (578)
+++..|..|.| |||+|+..|+.+++++|++ .|++++.
T Consensus 203 -----------------------------------~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~gad~~~ 239 (364)
T 3ljn_A 203 -----------------------------------RLDYANKQGNS-------HLHWAILINWEDVAMRFVE-MGIDVNM 239 (364)
T ss_dssp -----------------------------------CTTCCCTTCCC-------TTHHHHTTTCHHHHHHHHT-TTCCTTC
T ss_pred -----------------------------------cccccCCCCCc-------HHHHHHHcCCHHHHHHHHH-cCCCCCC
Confidence 11222345666 9999999999999999998 8999999
Q ss_pred cccCCChHHHHHHHhCcHHHHHHHHHhhchhh--------hhhhhcccCCCCchhhHHHhcccc
Q 048145 293 VNEKGQNILHVAIMYRQLEIFEIIKEKMQLSL--------AEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 293 ~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--------~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
.|.+|+||||+|++.|+.+++++|+ +.+.+. .......+..|+|||++|+..++.
T Consensus 240 ~d~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~ 302 (364)
T 3ljn_A 240 EDNEHTVPLYLSVRAAMVLLTKELL-QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302 (364)
T ss_dssp CCTTSCCHHHHHHHTCCHHHHHHHH-HHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred CCCCCCCHHHHHHHhChHHHHHHHH-HcCCchhhhcCcccCcccccccccccccchhhhhccCH
Confidence 9999999999999999999999999 333211 011112678899999999988854
No 27
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.6e-34 Score=271.95 Aligned_cols=209 Identities=18% Similarity=0.179 Sum_probs=182.2
Q ss_pred CChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHH
Q 048145 5 GDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV 84 (578)
Q Consensus 5 G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~i 84 (578)
|+.+.++.+++. +..+.+..|..|.||||+|+..|+.++|++|+++ +.+ ++.+|..|+||||+|+..|+.++
T Consensus 2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~ 73 (223)
T 2f8y_A 2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SAD-----ANIQDNMGRTPLHAAVSADAQGV 73 (223)
T ss_dssp ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcCCHHH
Confidence 344433333433 5556666789999999999999999999999999 899 99999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCch
Q 048145 85 AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCP 159 (578)
Q Consensus 85 v~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~ 159 (578)
+++|+++++ .+++.++..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+
T Consensus 74 v~~Ll~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--------~~~~- 137 (223)
T 2f8y_A 74 FQILIRNRA-------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA--------AVNN- 137 (223)
T ss_dssp HHHHHHBTT-------SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH--------HTTC-
T ss_pred HHHHHHcCC-------CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH--------HcCC-
Confidence 999999998 68899999999999999999999999999998 56788999999999 7777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccc
Q 048145 160 AIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAH 239 (578)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 239 (578)
.+++++|+++|++++..
T Consensus 138 ---------------~~~v~~Ll~~g~~~~~~------------------------------------------------ 154 (223)
T 2f8y_A 138 ---------------VDAAVVLLKNGANKDMQ------------------------------------------------ 154 (223)
T ss_dssp ---------------HHHHHHHHHTTCCTTCC------------------------------------------------
T ss_pred ---------------HHHHHHHHHcCCCCCCc------------------------------------------------
Confidence 89999999998876543
Q ss_pred cccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHh
Q 048145 240 VDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEK 319 (578)
Q Consensus 240 ~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~ 319 (578)
|..|.| |||+|++.|+.+++++|++ .+++++.+|..|+||||+|+++++.+++++|+ +
T Consensus 155 -------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~-~ 212 (223)
T 2f8y_A 155 -------------NNREET-------PLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLD-E 212 (223)
T ss_dssp -------------CTTCCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-H
T ss_pred -------------CCCCcC-------HHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHH-H
Confidence 235566 9999999999999999998 89999999999999999999999999999999 5
Q ss_pred hch
Q 048145 320 MQL 322 (578)
Q Consensus 320 ~~~ 322 (578)
++.
T Consensus 213 ~g~ 215 (223)
T 2f8y_A 213 YNL 215 (223)
T ss_dssp TTC
T ss_pred cCC
Confidence 443
No 28
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.5e-34 Score=289.16 Aligned_cols=232 Identities=17% Similarity=0.142 Sum_probs=194.7
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.++.+++. +...+..|..|.||||+|+..|+.++|++|+++ +++ ++.+|..|.||||+|+..|
T Consensus 65 A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 135 (351)
T 3utm_A 65 AAGYNRVRIVQLLLQH---GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GAC-----VNAMDLWQFTPLHEAASKN 135 (351)
T ss_dssp HHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHc---CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcC
Confidence 5778999977777766 445677899999999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH---------------------Hh-----cc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFA---------------------EQ-----VN 134 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll---------------------~~-----~~ 134 (578)
+.+++++|+++|+ +++..+..|.||+|+|+..+..+.+++.. .. ..
T Consensus 136 ~~~~v~~Ll~~g~--------~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (351)
T 3utm_A 136 RVEVCSLLLSHGA--------DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207 (351)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCC
T ss_pred CHHHHHHHHHcCC--------CCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccC
Confidence 9999999999999 89999999999998876655555544433 32 23
Q ss_pred ccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccc
Q 048145 135 QTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKK 214 (578)
Q Consensus 135 ~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (578)
+..|.||||+|+ ..+++ ...+++++|+++|.+++..
T Consensus 208 ~~~~~t~L~~A~--------~~~~~-------------~~~~~~~~Ll~~g~~~~~~----------------------- 243 (351)
T 3utm_A 208 PQSHETALHCAV--------ASLHP-------------KRKQVAELLLRKGANVNEK----------------------- 243 (351)
T ss_dssp TTTCCCHHHHHH--------HCCST-------------THHHHHHHHHHTTCCTTCC-----------------------
T ss_pred CCCCCCHHHHHH--------HHhCc-------------cHHHHHHHHHHcCCCcCCc-----------------------
Confidence 466788888887 33220 0167788888877765433
Q ss_pred ccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccc
Q 048145 215 VVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVN 294 (578)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d 294 (578)
|..|.| |||+|++.|+.+++++|++ .|++++.+|
T Consensus 244 --------------------------------------~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d 277 (351)
T 3utm_A 244 --------------------------------------NKDFMT-------PLHVAAERAHNDVMEVLHK-HGAKMNALD 277 (351)
T ss_dssp --------------------------------------CTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCC
T ss_pred --------------------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCCcC
Confidence 235666 9999999999999999998 899999999
Q ss_pred cCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHh
Q 048145 295 EKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVAD 344 (578)
Q Consensus 295 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~ 344 (578)
..|+||||+|+++|+.+++++|+ +.|++++.+|.+|+||+|+|..
T Consensus 278 ~~g~t~L~~A~~~~~~~~v~~Ll-----~~gad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 278 SLGQTALHRAALAGHLQTCRLLL-----SYGSDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHSCH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHH-----HcCCCCCCcCCCCCChhhhhhH
Confidence 99999999999999999999999 5677899999999999999853
No 29
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.1e-35 Score=299.21 Aligned_cols=241 Identities=15% Similarity=0.121 Sum_probs=195.2
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHHHcCCHHHHHHHH--------hhcCC
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALATINNVDVAKTLV--------EFSKQ 94 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~g~~~iv~~Ll--------~~g~~ 94 (578)
+..+..|.||||+||..|+ ++++.|+. .+ ++.+| ..|+||||+||..|+.+++++|+ +.|+
T Consensus 88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~-----~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga- 157 (373)
T 2fo1_E 88 TEPEPESPIKLHTEAAGSY-AITEPITR---ES-----VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA- 157 (373)
T ss_dssp ------CCCHHHHHHHSSS-CCCSCCST---TT-----TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-
T ss_pred cCCCCCCccHHHHHhcCCc-hHHHHhcc---cc-----ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC-
Confidence 4568899999999999654 78877754 34 78888 79999999999999998888776 7888
Q ss_pred CCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhh
Q 048145 95 SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ 169 (578)
Q Consensus 95 ~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~ 169 (578)
+++.+|..|.||||+|+.+|+.++|++|++. ..+..|.||||+|+ ..|+
T Consensus 158 -------~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~--------~~g~----------- 211 (373)
T 2fo1_E 158 -------DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA--------ANRD----------- 211 (373)
T ss_dssp -------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH--------HTTC-----------
T ss_pred -------CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHH--------HCCC-----------
Confidence 8999999999999999999999999999998 56789999999999 7788
Q ss_pred hhHHHHHHHHHHHhcc---ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccc
Q 048145 170 IHKKAVALVKMLVEKR---IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQA 246 (578)
Q Consensus 170 ~~~~~~~~v~~Ll~~g---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 246 (578)
.+++++|++++ .+++
T Consensus 212 -----~~~v~~Ll~~~~~~~~~~--------------------------------------------------------- 229 (373)
T 2fo1_E 212 -----FGMMVYMLNSTKLKGDIE--------------------------------------------------------- 229 (373)
T ss_dssp -----HHHHHHHTTSHHHHHTTS---------------------------------------------------------
T ss_pred -----HHHHHHHHhcCccccChh---------------------------------------------------------
Confidence 89999999876 3332
Q ss_pred ccccccccccccccccchhHHHHHHhcC---HHHHHHHHHHHCCCcccc--------cccCCChHHHHHHHhCcHHHHHH
Q 048145 247 VDQENDTTKDMTSSMRTMRILLFAVSNG---IIEILEEIRHKYPQTLDN--------VNEKGQNILHVAIMYRQLEIFEI 315 (578)
Q Consensus 247 ~~~~~~~~~g~t~~~~g~~pLh~Aa~~G---~~~iv~~Ll~~~~~~i~~--------~d~~G~t~Lh~A~~~g~~~iv~~ 315 (578)
..|..|.| |||+|+..| +.+++++|++ .+.+++. .|..|+||||+|+.+|+.+++++
T Consensus 230 ----~~d~~g~t-------~L~~A~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 297 (373)
T 2fo1_E 230 ----ELDRNGMT-------ALMIVAHNEGRDQVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297 (373)
T ss_dssp ----CCCTTSCC-------HHHHHHHSCSTTHHHHHHHHHH-HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred ----hcCCCCCC-------HHHHHHHhCCcchHHHHHHHHH-CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence 22335566 999999998 9999999998 6777775 67799999999999999999999
Q ss_pred HHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhh
Q 048145 316 IKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFD 395 (578)
Q Consensus 316 Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~ 395 (578)
|++.. +++++.+|.+|+||||+|+..|+. +.++.++..+......+.+|+||.+++.
T Consensus 298 Ll~~~----~~~~n~~d~~g~TpL~~A~~~g~~-------------------~iv~~Ll~~gad~~~~d~~g~t~l~~A~ 354 (373)
T 2fo1_E 298 LVGEK----GSNKDKQDEDGKTPIMLAAQEGRI-------------------EVVMYLIQQGASVEAVDATDHTARQLAQ 354 (373)
T ss_dssp HHHHS----CCCTTCCCTTCCCHHHHHHHHTCH-------------------HHHHHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred HHHhc----CCCccCcCCCCCCHHHHHHHcCCH-------------------HHHHHHHHcCCCccCCCCCCCCHHHHHH
Confidence 99221 267999999999999999999975 3444455444444433449999999876
Q ss_pred hh
Q 048145 396 LT 397 (578)
Q Consensus 396 ~~ 397 (578)
+.
T Consensus 355 ~~ 356 (373)
T 2fo1_E 355 AN 356 (373)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=271.00 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=189.8
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL 103 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~ 103 (578)
+..|..|.||||.|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.|+ ++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------~~ 68 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEA-GYD-----VRQPDKENVTLLHWAAINNRIDLVKYYISKGA--------IV 68 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CT
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHc-CCC-----cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC--------cc
Confidence 45688999999999999999999999998 899 99999999999999999999999999999999 44
Q ss_pred c-cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHH
Q 048145 104 V-VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVAL 177 (578)
Q Consensus 104 ~-~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 177 (578)
+ ..+..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .++
T Consensus 69 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--------~~~~----------------~~~ 124 (240)
T 3eu9_A 69 DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA--------QFGH----------------TSI 124 (240)
T ss_dssp TCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHH
T ss_pred hhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH--------HcCH----------------HHH
Confidence 4 4556699999999999999999999997 46788999999999 7777 899
Q ss_pred HHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccc
Q 048145 178 VKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDM 257 (578)
Q Consensus 178 v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 257 (578)
+++|+++|.+++.. +..|.
T Consensus 125 ~~~Ll~~~~~~~~~-------------------------------------------------------------~~~g~ 143 (240)
T 3eu9_A 125 VAYLIAKGQDVDMM-------------------------------------------------------------DQNGM 143 (240)
T ss_dssp HHHHHHTTCCTTCC-------------------------------------------------------------CTTSC
T ss_pred HHHHHhcCCCcccc-------------------------------------------------------------CCCCC
Confidence 99999988876433 23555
Q ss_pred cccccchhHHHHHHhcCH-HHHHHHHHHHCCCccccccc-CCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC
Q 048145 258 TSSMRTMRILLFAVSNGI-IEILEEIRHKYPQTLDNVNE-KGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG 335 (578)
Q Consensus 258 t~~~~g~~pLh~Aa~~G~-~~iv~~Ll~~~~~~i~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G 335 (578)
| |||+|+..|+ .++++.|++ .+.+++..+. .|+||||+|+.+|+.+++++|+ +.|++++.+|.+|
T Consensus 144 t-------~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g 210 (240)
T 3eu9_A 144 T-------PLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-----EAGANVDAQNIKG 210 (240)
T ss_dssp C-------HHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH-----HHTCCTTCBCTTS
T ss_pred c-------HHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH-----HcCCCCCCcCCCC
Confidence 6 9999997776 788888887 8899999987 9999999999999999999999 5677899999999
Q ss_pred CchhhHHHhcccc
Q 048145 336 YTILHQVADMKYY 348 (578)
Q Consensus 336 ~T~LhlA~~~~~~ 348 (578)
+||||+|++.++.
T Consensus 211 ~t~l~~A~~~~~~ 223 (240)
T 3eu9_A 211 ESALDLAKQRKNV 223 (240)
T ss_dssp CBHHHHHHHTTCH
T ss_pred CCHHHHHHHcCcH
Confidence 9999999999865
No 31
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.4e-35 Score=279.83 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=182.0
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCC---CchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCC
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLP---VEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADK 100 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~---~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~ 100 (578)
+.+|.+|+||||+|+..|+.++++.|++... .+ ++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------- 69 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLAVITNQPEIAEALLGAGC------- 69 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCC-----CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-------
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHH-----hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------
Confidence 3568899999999999999999999998722 36 88999999999999999999999999999999
Q ss_pred CCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhh
Q 048145 101 NPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ 169 (578)
Q Consensus 101 ~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~ 169 (578)
+++.+|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+
T Consensus 70 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~--------~~~~----------- 129 (236)
T 1ikn_D 70 -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS--------IHGY----------- 129 (236)
T ss_dssp -CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH--------HTTC-----------
T ss_pred -CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH--------HcCC-----------
Confidence 8999999999999999999999999999986 34678999999999 7787
Q ss_pred hhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccc
Q 048145 170 IHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQ 249 (578)
Q Consensus 170 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 249 (578)
.+++++|+++|++++..
T Consensus 130 -----~~~v~~Ll~~g~~~~~~---------------------------------------------------------- 146 (236)
T 1ikn_D 130 -----LGIVELLVSLGADVNAQ---------------------------------------------------------- 146 (236)
T ss_dssp -----HHHHHHHHHHTCCTTCC----------------------------------------------------------
T ss_pred -----HHHHHHHHHcCCCCCCC----------------------------------------------------------
Confidence 89999999999876543
Q ss_pred ccccc-ccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhh
Q 048145 250 ENDTT-KDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWA 328 (578)
Q Consensus 250 ~~~~~-~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 328 (578)
+. .|.| |||+|+..|+.+++++|++ .|++++..|..|+||||+|+.+|+.+++++|+ + .|++.
T Consensus 147 ---~~~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll-~----~ga~~ 210 (236)
T 1ikn_D 147 ---EPCNGRT-------ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG-Q----LTLEN 210 (236)
T ss_dssp ---CTTTCCC-------HHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH-T----TSCGG
T ss_pred ---CCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHH-H----cchhh
Confidence 12 4556 9999999999999999998 89999999999999999999999999999999 4 44444
Q ss_pred h--cccCCCCchhhHHHhcc
Q 048145 329 L--KIDNEGYTILHQVADMK 346 (578)
Q Consensus 329 ~--~~d~~G~T~LhlA~~~~ 346 (578)
. .++.+|.||.+.+....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 211 LQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp GSSCCCCCTTTCCCCC----
T ss_pred hhcCCccchHHHHhhhcccc
Confidence 4 78999999999887654
No 32
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.4e-32 Score=263.47 Aligned_cols=213 Identities=17% Similarity=0.203 Sum_probs=184.6
Q ss_pred hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cccc
Q 048145 62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQT 136 (578)
Q Consensus 62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~ 136 (578)
++.+|.+|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+.+|+.+++++|++. ..+.
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 75 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA--------NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCC--------CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC
Confidence 77889999999999999999999999999999 8999999999999999999999999999998 5678
Q ss_pred CCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccccccCCCCCCchhhcccCCCCccccc
Q 048145 137 AAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKV 215 (578)
Q Consensus 137 ~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (578)
.|.||||+|+ ..|+ .+++++|+++| .+++..
T Consensus 76 ~g~t~L~~A~--------~~~~----------------~~~~~~Ll~~~~~~~~~~------------------------ 107 (237)
T 3b7b_A 76 EGSTCLHLAA--------KKGH----------------YEVVQYLLSNGQMDVNCQ------------------------ 107 (237)
T ss_dssp TSCCHHHHHH--------HTTC----------------HHHHHHHHTTTCCCTTCC------------------------
T ss_pred CCCcHHHHHH--------HcCC----------------HHHHHHHHhCCCCCcccC------------------------
Confidence 8999999999 7787 89999999987 333221
Q ss_pred cccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccccc
Q 048145 216 VDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNE 295 (578)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~ 295 (578)
+..|.| |||+|+..|+.+++++|++ .+.+++..|.
T Consensus 108 -------------------------------------~~~g~t-------~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~ 142 (237)
T 3b7b_A 108 -------------------------------------DDGGWT-------PMIWATEYKHVDLVKLLLS-KGSDINIRDN 142 (237)
T ss_dssp -------------------------------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCT
T ss_pred -------------------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCccCC
Confidence 234555 9999999999999999998 8999999999
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCC
Q 048145 296 KGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAP 375 (578)
Q Consensus 296 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~ 375 (578)
.|+||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+..++. +.++.++.
T Consensus 143 ~g~t~L~~A~~~~~~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~-------------------~~v~~Ll~ 198 (237)
T 3b7b_A 143 EENICLHWAAFSGCVDIAEILL-----AAKCDLHAVNIHGDSPLHIAARENRY-------------------DCVVLFLS 198 (237)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHH-----TTTCCTTCCCTTCCCHHHHHHHTTCH-------------------HHHHHHHT
T ss_pred CCCCHHHHHHHCCCHHHHHHHH-----HcCCCCCCcCCCCCCHHHHHHHhCCH-------------------hHHHHHHH
Confidence 9999999999999999999999 56778999999999999999999864 34455555
Q ss_pred CccccccccCCCCChhhhhhhhhH
Q 048145 376 PHYAMHRDKNKRMTANDLFDLTHE 399 (578)
Q Consensus 376 ~~~~~~~n~~~g~t~~~l~~~~~~ 399 (578)
.+......+.+|+||.+++.....
T Consensus 199 ~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 199 RDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp TTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred cCCCCCccCCCCCCHHHHHHHHHH
Confidence 555444444499999999865543
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=280.46 Aligned_cols=206 Identities=16% Similarity=0.151 Sum_probs=156.1
Q ss_pred CcccCChHHHHHHHhcCCch------hhhccCCCCCCcHHHHHHhcCCh-HHHHHHHccCCCchhhhhhhccCCCCChHH
Q 048145 1 MALKGDRQGFLRYFAQQTDE------ELLGYRTFNGECAIHVAAAMEDP-ELIKKFLGRLPVEKRLEALMQTDDNGNTAV 73 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~------~~~~~~~~~g~T~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpL 73 (578)
||..|+.+.++.+|+. ... ...+..+..|.||||.|+..++. ++++.|++. |++ ++.+|.+|+|||
T Consensus 18 A~~~G~~~~v~~LL~~-~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gad-----vn~~d~~G~TpL 90 (269)
T 4b93_B 18 AVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLG-----VNVTSQDGSSPL 90 (269)
T ss_dssp HHHTTCHHHHHHHHTC-C----------------------------------------C-CCC-----TTCCCTTSCCHH
T ss_pred HHHcCCHHHHHHHHHC-CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCC-----CCCcCCCCCCHH
Confidence 6889999988888876 221 12456678899999999998886 488999998 999 999999999999
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHH
Q 048145 74 HALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYI 148 (578)
Q Consensus 74 h~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~ 148 (578)
|+||..|+.+++++|++.|+ +++.++..|.||+|.|+..++.+++++|++. ..|..|.||||+|+
T Consensus 91 h~A~~~g~~~~v~~Ll~~~a--------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~-- 160 (269)
T 4b93_B 91 HVAALHGRADLIPLLLKHGA--------NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC-- 160 (269)
T ss_dssp HHHHHTTCTTHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH--
T ss_pred HHHHHcCcHHHHHHHHhcCC--------CcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--
Confidence 99999999999999999999 8999999999999999999999999999998 57889999999999
Q ss_pred HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145 149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI 228 (578)
Q Consensus 149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (578)
..|+ .+++++|+++|++++..
T Consensus 161 ------~~g~----------------~~~v~~Ll~~gadvn~~------------------------------------- 181 (269)
T 4b93_B 161 ------SGGH----------------HELVALLLQHGASINAS------------------------------------- 181 (269)
T ss_dssp ------HTTC----------------GGGHHHHHHTTCCTTCB-------------------------------------
T ss_pred ------HCCC----------------HHHHHHHHHCCCCCCcc-------------------------------------
Confidence 7788 89999999999876543
Q ss_pred HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145 229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR 308 (578)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g 308 (578)
+..|.| |||+|+..|+.++|++|++ .|++++.+|.+|+||||+|++++
T Consensus 182 ------------------------~~~g~t-------~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 182 ------------------------NNKGNT-------ALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp ------------------------CTTSCB-------HHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTC
T ss_pred ------------------------ccCCCc-------HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCC
Confidence 235666 9999999999999999998 89999999999999999999877
Q ss_pred cHHHHHHH
Q 048145 309 QLEIFEII 316 (578)
Q Consensus 309 ~~~iv~~L 316 (578)
+ ++++|
T Consensus 230 ~--i~~lL 235 (269)
T 4b93_B 230 K--IMELL 235 (269)
T ss_dssp H--HHHHT
T ss_pred c--HHHHH
Confidence 5 44444
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2e-33 Score=266.76 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=175.9
Q ss_pred CChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH
Q 048145 41 EDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS 119 (578)
Q Consensus 41 g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~ 119 (578)
|+.+++++|+++ +.+ ++.. |.+|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+.
T Consensus 2 g~~~~i~~Ll~~-g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~ 67 (223)
T 2f8y_A 2 DAPAVISDFIYQ-GAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEASA--------DANIQDNMGRTPLHAAVS 67 (223)
T ss_dssp ---CCEETTEET-TCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHH
T ss_pred CcHHHHHHHHHc-CCC-----cccccCCCCCchHHHHHHcCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHH
Confidence 778899999998 777 7665 8999999999999999999999999999 899999999999999999
Q ss_pred cCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccccc
Q 048145 120 VGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHE 193 (578)
Q Consensus 120 ~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 193 (578)
.|+.+++++|++. ..+..|.||||+|+ ..|+ .+++++|+++|++++..
T Consensus 68 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~Ll~~g~~~~~~-- 121 (223)
T 2f8y_A 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAA--------RLAV----------------EGMLEDLINSHADVNAV-- 121 (223)
T ss_dssp TTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH--------HHTC----------------HHHHHHHHHTTCCTTCB--
T ss_pred cCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH--------HhCc----------------HHHHHHHHHcCCCCcCc--
Confidence 9999999999987 45788999999999 6677 89999999988876543
Q ss_pred CCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhc
Q 048145 194 KPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSN 273 (578)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~ 273 (578)
|..|.| |||+|+..
T Consensus 122 -----------------------------------------------------------~~~g~t-------~L~~A~~~ 135 (223)
T 2f8y_A 122 -----------------------------------------------------------DDLGKS-------ALHWAAAV 135 (223)
T ss_dssp -----------------------------------------------------------CTTSCB-------HHHHHHHT
T ss_pred -----------------------------------------------------------CCCCCc-------HHHHHHHc
Confidence 235566 99999999
Q ss_pred CHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 274 GIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 274 G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
|+.+++++|++ .+++++.+|..|+||||+|+++|+.+++++|+ +.|++++.+|..|+||||+|++.++.
T Consensus 136 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~ 204 (223)
T 2f8y_A 136 NNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL-----DHFANRDITDHMDRLPRDIAQERMHH 204 (223)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CCHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHH-----HcCCCCccccccCCCHHHHHHHhcch
Confidence 99999999998 79999999999999999999999999999999 56778999999999999999999875
No 35
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.1e-33 Score=269.91 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=186.9
Q ss_pred CcccCChHHHHHHHhcC-CchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc
Q 048145 1 MALKGDRQGFLRYFAQQ-TDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI 79 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~-~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~ 79 (578)
||..|+.+.++.+++.. ..+...+..|..|.||||+|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GAS-----PMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCC-----ccccCCCCCCHHHHHHHc
Confidence 67889999888887610 02445677889999999999999999999999998 999 999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccc-cCCccHHHHHHHHHHHHH
Q 048145 80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQ-TAAISILSSKMYIAIWRQ 153 (578)
Q Consensus 80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-~~g~t~Lh~A~~~~~~~~ 153 (578)
|+.+++++|++.++... .+++..|..|.||||+|+..|+.+++++|++. ..+ ..|.||||+|+
T Consensus 90 ~~~~~~~~Ll~~~~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~------- 158 (241)
T 1k1a_A 90 RSPTCLRALLDSAAPGT----LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV------- 158 (241)
T ss_dssp TCHHHHHHHHHHSCTTS----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-------
T ss_pred CCHHHHHHHHHcCCCcc----ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH-------
Confidence 99999999999987110 26788899999999999999999999999998 234 78999999999
Q ss_pred hccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145 154 VIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG 233 (578)
Q Consensus 154 ~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (578)
..|+ .+++++|+++|++++..
T Consensus 159 -~~~~----------------~~~v~~Ll~~g~~~~~~------------------------------------------ 179 (241)
T 1k1a_A 159 -ENNS----------------LSMVQLLLQHGANVNAQ------------------------------------------ 179 (241)
T ss_dssp -HTTC----------------HHHHHHHHHTTCCTTCB------------------------------------------
T ss_pred -HcCC----------------HHHHHHHHHcCCCCCCc------------------------------------------
Confidence 7787 89999999998876543
Q ss_pred CccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHH
Q 048145 234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIF 313 (578)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv 313 (578)
|..|.| |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|+.+++
T Consensus 180 -------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 180 -------------------MYSGSS-------ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp -------------------CTTSCB-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred -------------------CCCCCC-------HHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence 235666 9999999999999999998 8999999999999999999999999999
Q ss_pred HHHH
Q 048145 314 EIIK 317 (578)
Q Consensus 314 ~~Ll 317 (578)
+.|.
T Consensus 233 ~~l~ 236 (241)
T 1k1a_A 233 RGKA 236 (241)
T ss_dssp TC--
T ss_pred hhhc
Confidence 9988
No 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.9e-32 Score=261.74 Aligned_cols=188 Identities=21% Similarity=0.178 Sum_probs=164.7
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK 108 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~ 108 (578)
.|+||||+|++.|+.++|+.|++..+.+ ++.+|.+|+||||+|+..|+.+++++|+++|++... ...+.+|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~~~ 73 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-----VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF---EPMTSELY 73 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG---CCCCSTTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-----cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc---ccccccCC
Confidence 5899999999999999999999987888 999999999999999999999999999999981100 01266788
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHh-----ccc-------------cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhh
Q 048145 109 LGETPLYRAASVGKIEALRYFAEQ-----VNQ-------------TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQI 170 (578)
Q Consensus 109 ~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-------------~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~ 170 (578)
.|.||||+|+.+|+.+++++|++. ..+ ..|.||||+|+ ..|+
T Consensus 74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--------~~~~------------ 133 (232)
T 2rfa_A 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA--------CVGS------------ 133 (232)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH--------HHTC------------
T ss_pred CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH--------HcCC------------
Confidence 999999999999999999999998 222 26999999999 6677
Q ss_pred hHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccc
Q 048145 171 HKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQE 250 (578)
Q Consensus 171 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 250 (578)
.+++++|+++|++++..
T Consensus 134 ----~~~v~~Ll~~ga~~~~~----------------------------------------------------------- 150 (232)
T 2rfa_A 134 ----EEIVRLLIEHGADIRAQ----------------------------------------------------------- 150 (232)
T ss_dssp ----HHHHHHHHHTTCCTTCC-----------------------------------------------------------
T ss_pred ----HHHHHHHHHCCCCCCCC-----------------------------------------------------------
Confidence 89999999998876543
Q ss_pred ccccccccccccchhHHHHHHhcCHHHHH----HHHHHHCCCcc------cccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 251 NDTTKDMTSSMRTMRILLFAVSNGIIEIL----EEIRHKYPQTL------DNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 251 ~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv----~~Ll~~~~~~i------~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|..|+| |||+|+..|+.+++ ++|++ .++++ +..|.+|+||||+|+++|+.+++++|+
T Consensus 151 --d~~g~t-------~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll 217 (232)
T 2rfa_A 151 --DSLGNT-------VLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217 (232)
T ss_dssp --CTTSCC-------HHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred --CCCCCC-------HHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 235666 99999999999988 99998 77766 689999999999999999999999999
No 37
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.1e-33 Score=263.87 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=182.5
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCC--Cchhhhhhhc-cCCCCChHHHHHH
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLP--VEKRLEALMQ-TDDNGNTAVHALA 77 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~~~~~~~l~~-~d~~G~TpLh~Aa 77 (578)
|+..|+.+.++.++++ .....+..|..|.||||+|+..|+.+++++|++. + .+ ++. +|..|+||||+|+
T Consensus 9 A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-----~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 9 ACMENEFFKVQELLHS--KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVN-----LDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp HHHTTCHHHHHHHHHH--CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCC-----GGGCCCTTSCCHHHHHH
T ss_pred HHHhCCHHHHHHHHhc--CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccc-----ccccCCCCCCCHHHHHH
Confidence 6789999988888888 5566677899999999999999999999999999 6 55 666 8899999999999
Q ss_pred HcCCHHHHHHHHhhc--CCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHH
Q 048145 78 TINNVDVAKTLVEFS--KQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAI 150 (578)
Q Consensus 78 ~~g~~~iv~~Ll~~g--~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~ 150 (578)
..|+.+++++|+++| + +++.++..|.||||+|+..|+.+++++|++. ..+..|.||||+|+
T Consensus 81 ~~~~~~~~~~Ll~~g~~~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---- 148 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKP--------DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA---- 148 (228)
T ss_dssp HHCCHHHHHHHHSSSSCC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----
T ss_pred HcCCHHHHHHHHhCCCCc--------ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH----
Confidence 999999999999998 5 7889999999999999999999999999998 56789999999999
Q ss_pred HHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHH
Q 048145 151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQ 229 (578)
Q Consensus 151 ~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (578)
..|+ .+++++|+++| .+++..
T Consensus 149 ----~~~~----------------~~~v~~Ll~~g~~~~~~~-------------------------------------- 170 (228)
T 2dzn_A 149 ----SVGS----------------LKLIELLCGLGKSAVNWQ-------------------------------------- 170 (228)
T ss_dssp ----HTTC----------------HHHHHHHHTTTCCCSCCC--------------------------------------
T ss_pred ----HcCC----------------HHHHHHHHhcCcccccCc--------------------------------------
Confidence 7777 89999999988 554332
Q ss_pred HhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCc
Q 048145 230 VKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ 309 (578)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~ 309 (578)
|..|+| |||+|+..|+.+++++|++..|++++.+|.+|+||||+|++.
T Consensus 171 -----------------------d~~g~t-------~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~-- 218 (228)
T 2dzn_A 171 -----------------------DKQGWT-------PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-- 218 (228)
T ss_dssp -----------------------CTTSCC-------HHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST--
T ss_pred -----------------------CCCCCC-------HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH--
Confidence 235666 999999999999999999558999999999999999999765
Q ss_pred HHHHHHHH
Q 048145 310 LEIFEIIK 317 (578)
Q Consensus 310 ~~iv~~Ll 317 (578)
+++++|+
T Consensus 219 -~~~~~l~ 225 (228)
T 2dzn_A 219 -QVKKFFL 225 (228)
T ss_dssp -THHHHHH
T ss_pred -HHHHHHH
Confidence 5667776
No 38
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=9.1e-32 Score=250.98 Aligned_cols=185 Identities=21% Similarity=0.240 Sum_probs=167.6
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145 27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE 106 (578)
Q Consensus 27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~ 106 (578)
+..+.||||.|+..|+.+.|+.|++..+.+ ++.+|.+|+||||+|++.|+.+++++|+++|+ +++.+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~ 68 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-----VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA--------DINLQ 68 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCC
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCCC
Confidence 457899999999999999999999985558 99999999999999999999999999999999 89999
Q ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHH
Q 048145 107 NKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKM 180 (578)
Q Consensus 107 n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~ 180 (578)
|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .+++++
T Consensus 69 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~v~~ 124 (201)
T 3hra_A 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA--------EKGH----------------IDNVKL 124 (201)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH--------HTTC----------------HHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH--------HcCC----------------HHHHHH
Confidence 99999999999999999999999966 56788999999999 7777 899999
Q ss_pred HHhcc-ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccc
Q 048145 181 LVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTS 259 (578)
Q Consensus 181 Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~ 259 (578)
|+++| .+++.. |..|.|
T Consensus 125 Ll~~g~~~~~~~-------------------------------------------------------------~~~g~t- 142 (201)
T 3hra_A 125 LLEDGREDIDFQ-------------------------------------------------------------NDFGYT- 142 (201)
T ss_dssp HHHHCCCCTTCC-------------------------------------------------------------CTTSCC-
T ss_pred HHHcCCCCcCCC-------------------------------------------------------------CCCCCC-
Confidence 99987 554332 235566
Q ss_pred cccchhHHHHHHhcCH-----HHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 260 SMRTMRILLFAVSNGI-----IEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 260 ~~~g~~pLh~Aa~~G~-----~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|||+|+..|+ .+++++|++ .|++++.+|.+|+||||+|+++|+.+++++|+
T Consensus 143 ------~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 143 ------ALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp ------HHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred ------HHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 9999999887 999999998 89999999999999999999999999999998
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5e-33 Score=280.10 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=177.4
Q ss_pred cccCChHHHHHHHhcCCchhhhcc-----------------CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhc
Q 048145 2 ALKGDRQGFLRYFAQQTDEELLGY-----------------RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQ 64 (578)
Q Consensus 2 a~~G~~~~~~~ll~~~~~~~~~~~-----------------~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~ 64 (578)
+..|+.+.++.++++ .-. .+. ......+.+|.|+..+..++++.|++. +.+ ++.
T Consensus 55 ~~~g~~~~v~~Ll~~--g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~d-----vn~ 125 (327)
T 1sw6_A 55 NDNEQKMKLEAFLQR--LLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLN-----LNI 125 (327)
T ss_dssp CCHHHHHHHHHHHHH--HHC--------------------------------CHHHHHHHHHHHCTTS-CCC-----SCS
T ss_pred ccCchhHHHHHHHHh--ccC-CccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCC-----ccc
Confidence 345788877778776 211 111 111223346888888889999999988 999 999
Q ss_pred -cCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCc---HHHHHHHHHh------cc
Q 048145 65 -TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK---IEALRYFAEQ------VN 134 (578)
Q Consensus 65 -~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~---~~iv~~Ll~~------~~ 134 (578)
+|.+|+||||+||..|+.++|++|+++|+ +++.+|..|.||||+|+.+|+ .++++.|++. ..
T Consensus 126 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga--------d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~ 197 (327)
T 1sw6_A 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGS--------NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197 (327)
T ss_dssp CCSTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence 89999999999999999999999999999 899999999999999999999 6777777765 57
Q ss_pred ccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccc
Q 048145 135 QTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKK 214 (578)
Q Consensus 135 ~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (578)
|..|.||||+|+... ...|+ .+++++|++.+..+....... ...
T Consensus 198 d~~g~tpLh~A~~~~----~~~g~----------------~~~v~~Ll~~~~~~~~~~~~~----~i~------------ 241 (327)
T 1sw6_A 198 DSMNRTILHHIIITS----GMTGC----------------SAAAKYYLDILMGWIVKKQNR----PIQ------------ 241 (327)
T ss_dssp CTTCCCHHHHHHHHH----TSTTC----------------HHHHHHHHHHHHHHHHHGGGC----CEE------------
T ss_pred CCCCCCHHHHHHHHc----ccccc----------------HHHHHHHHHHHHHHHhcccch----HHH------------
Confidence 899999999999321 01566 889999998766443221000 000
Q ss_pred ccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccc
Q 048145 215 VVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVN 294 (578)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d 294 (578)
........+++..+..|.| |||.|+. +++|++. +++.+|
T Consensus 242 -------------------------~~~~~~g~~~~~~~~~g~t-------~L~~a~~------~~~Ll~~---~~n~~d 280 (327)
T 1sw6_A 242 -------------------------SGTNEKESKPNDKNGERKD-------SILENLD------LKWIIAN---MLNAQD 280 (327)
T ss_dssp -------------------------EC----------------C-------HHHHHCS------HHHHHHH---TTTCCC
T ss_pred -------------------------hhhhcccCCcccccccCCC-------hhHHHHH------HHHHHHh---CCCCCC
Confidence 0000112333444445555 9999996 8999985 599999
Q ss_pred cCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145 295 EKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK 346 (578)
Q Consensus 295 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~ 346 (578)
.+|+||||+|+++|+.+++++|+ +.|++++.+|.+|+||||+|++.|
T Consensus 281 ~~G~TpLh~A~~~g~~~~v~~Ll-----~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 281 SNGDTCLNIAARLGNISIVDALL-----DYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TTSCCHHHHHHHHCCHHHHHHHH-----HTTCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHH-----HcCCCCcccCCCCCCHHHHHHhcC
Confidence 99999999999999999999999 567889999999999999999764
No 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=4.1e-32 Score=269.84 Aligned_cols=244 Identities=17% Similarity=0.164 Sum_probs=189.6
Q ss_pred HHHhcCChHHHHHHHccCCCchhh----hhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145 36 VAAAMEDPELIKKFLGRLPVEKRL----EALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE 111 (578)
Q Consensus 36 ~Aa~~g~~~~v~~Ll~~~~~~~~~----~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~ 111 (578)
.++..|+.+.++.++.. ..+-.. ......+..|.||||.||..|+.+++++|+++|+ +++.+|..|.
T Consensus 4 ~~a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~ 74 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGS-ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA--------DINYANVDGL 74 (299)
T ss_dssp HHHHHHHHHHHHHHHHT-TTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC--------CTTCBCTTCC
T ss_pred hHHHHHHHHHHHHHHcc-ccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC--------CCcccCCCCC
Confidence 56777888888887766 222000 0011224468899999999999999999999999 8999999999
Q ss_pred CHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccc
Q 048145 112 TPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRI 186 (578)
Q Consensus 112 TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~ 186 (578)
||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .+++++|+++|+
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~--------~~g~----------------~~~v~~Ll~~g~ 130 (299)
T 1s70_B 75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA--------SCGY----------------LDIAEYLISQGA 130 (299)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HHTC----------------HHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--------HcCC----------------HHHHHHHHhCCC
Confidence 999999999999999999998 56788999999999 6777 899999999988
Q ss_pred cccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhH
Q 048145 187 DDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRI 266 (578)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~p 266 (578)
+++.. |..|.| |
T Consensus 131 ~~~~~-------------------------------------------------------------~~~g~t-------~ 142 (299)
T 1s70_B 131 HVGAV-------------------------------------------------------------NSEGDT-------P 142 (299)
T ss_dssp CTTCC-------------------------------------------------------------CTTSCC-------H
T ss_pred CCCCc-------------------------------------------------------------CCCCCC-------H
Confidence 76544 123444 7
Q ss_pred HHHHHhcCHHHHHHHHHHHCCCccc--------------------------ccccCCChHHHHHHHhCcHHHHHHHHHhh
Q 048145 267 LLFAVSNGIIEILEEIRHKYPQTLD--------------------------NVNEKGQNILHVAIMYRQLEIFEIIKEKM 320 (578)
Q Consensus 267 Lh~Aa~~G~~~iv~~Ll~~~~~~i~--------------------------~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~ 320 (578)
||+|+..|+.++++.++...+.+++ ..+..|.||||+|+.+|+.+++++|+
T Consensus 143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll--- 219 (299)
T 1s70_B 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI--- 219 (299)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH---
T ss_pred HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH---
Confidence 7777777777777766665554443 35678999999999999999999999
Q ss_pred chhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhhhhHH
Q 048145 321 QLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHED 400 (578)
Q Consensus 321 ~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~~~~ 400 (578)
+.|++++.+|.+|+||||+|+..|+. +.++.++..+......+..|+||.+++.+...+
T Consensus 220 --~~g~d~~~~d~~g~tpL~~A~~~~~~-------------------~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 278 (299)
T 1s70_B 220 --QARYDVNIKDYDGWTPLHAAAHWGKE-------------------EACRILVENLCDMEAVNKVGQTAFDVADEDILG 278 (299)
T ss_dssp --TTTCCTTCCCTTCCCHHHHHHHTTCH-------------------HHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGH
T ss_pred --HcCCCCCCcCCCCCcHHHHHHhcCCH-------------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHH
Confidence 56778999999999999999999975 344444544544444344999999998776555
Q ss_pred HHHH
Q 048145 401 QLRK 404 (578)
Q Consensus 401 ~~~~ 404 (578)
.+++
T Consensus 279 ~l~~ 282 (299)
T 1s70_B 279 YLEE 282 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 41
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=2.5e-31 Score=254.83 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=183.0
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHc
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATI 79 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~ 79 (578)
|+..|+.+.++.+++. +...+..+..|.||||+|+..|+.++|++|+++ +.+ ++.. +..|.||||+|+..
T Consensus 16 A~~~g~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-----~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 16 ATQYGIYERCRELVEA---GYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAI-----VDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCBTTTTBCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCc-----chhhcCCcCCChhHHHHHc
Confidence 6788999988888877 345677889999999999999999999999999 766 6544 45699999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHh
Q 048145 80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQV 154 (578)
Q Consensus 80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~ 154 (578)
|+.+++++|++.|+ +++.++..|.||||+|+..|+.+++++|++. ..+..|.||||+|+.
T Consensus 87 ~~~~~v~~Ll~~g~--------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~------- 151 (240)
T 3eu9_A 87 GHLSMVVQLMKYGA--------DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY------- 151 (240)
T ss_dssp TCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-------
T ss_pred CCHHHHHHHHHcCC--------CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH-------
Confidence 99999999999999 8899999999999999999999999999998 567899999999993
Q ss_pred ccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCC
Q 048145 155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGC 234 (578)
Q Consensus 155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (578)
.|+ ..+++++|++.|.+++....
T Consensus 152 -~~~---------------~~~~~~~L~~~~~~~~~~~~----------------------------------------- 174 (240)
T 3eu9_A 152 -RTH---------------SVDPTRLLLTFNVSVNLGDK----------------------------------------- 174 (240)
T ss_dssp -HCC---------------SSTTHHHHHHTTCCTTCCCT-----------------------------------------
T ss_pred -hCC---------------hHHHHHHHHhcCCCcchhhc-----------------------------------------
Confidence 332 05788899998887654310
Q ss_pred ccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHH
Q 048145 235 TNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFE 314 (578)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~ 314 (578)
..|.| |||+|+..|+.+++++|++ .|++++..|..|+||||+|+++|+.++++
T Consensus 175 -------------------~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 175 -------------------YHKNT-------ALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp -------------------TTCCC-------HHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred -------------------cCCCc-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 14555 9999999999999999998 68999999999999999999999999999
Q ss_pred HHH
Q 048145 315 IIK 317 (578)
Q Consensus 315 ~Ll 317 (578)
+|+
T Consensus 228 ~L~ 230 (240)
T 3eu9_A 228 HLQ 230 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 999
No 42
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2e-31 Score=261.33 Aligned_cols=215 Identities=16% Similarity=0.105 Sum_probs=162.4
Q ss_pred hccCCCCCCcHHHHHHhcCChHHHHHHHcc---CCCchhhhhhh----ccCCCCChHHHHHHHc---CCHHHHHHHHhhc
Q 048145 23 LGYRTFNGECAIHVAAAMEDPELIKKFLGR---LPVEKRLEALM----QTDDNGNTAVHALATI---NNVDVAKTLVEFS 92 (578)
Q Consensus 23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~~~l~----~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g 92 (578)
.+..|..|+||||.|++.|+.++|+.|++. .+.+ ++ .+|..|+||||+|+.. |+.+++++|+++|
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-----LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-----TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccc-----cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 355788999999999999999999999974 2444 43 4588999999999986 9999999999998
Q ss_pred CCCCCCC---CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cccc--------------CCccHHHHHHHHHH
Q 048145 93 KQSNDAD---KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQT--------------AAISILSSKMYIAI 150 (578)
Q Consensus 93 ~~~~~~~---~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~--------------~g~t~Lh~A~~~~~ 150 (578)
++.+... ......+|..|.||||+|+..|+.+++++|++. ..+. .|.||||+|+
T Consensus 81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~---- 156 (273)
T 2pnn_A 81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA---- 156 (273)
T ss_dssp HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH----
T ss_pred ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH----
Confidence 7211000 001223677899999999999999999999998 3343 7999999999
Q ss_pred HHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh---ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145 151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE---KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM 227 (578)
Q Consensus 151 ~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~---~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 227 (578)
..|+ .+++++|++ +|++++..
T Consensus 157 ----~~g~----------------~~~v~~Ll~~~~~gad~~~~------------------------------------ 180 (273)
T 2pnn_A 157 ----CTNQ----------------LAIVKFLLQNSWQPADISAR------------------------------------ 180 (273)
T ss_dssp ----HTTC----------------HHHHHHHHHCSSCCCCTTCC------------------------------------
T ss_pred ----HcCC----------------HHHHHHHHhcccCCCCceee------------------------------------
Confidence 7788 899999999 77766543
Q ss_pred HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCH---------HHHHHHHHHHCCCccc-------
Q 048145 228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI---------IEILEEIRHKYPQTLD------- 291 (578)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~---------~~iv~~Ll~~~~~~i~------- 291 (578)
|..|+| |||+|+..|+ .+++++|++ .+++++
T Consensus 181 -------------------------d~~g~t-------pLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~ 227 (273)
T 2pnn_A 181 -------------------------DSVGNT-------VLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEE 227 (273)
T ss_dssp -------------------------CTTSCC-------HHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGG
T ss_pred -------------------------CCCCCc-------HHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhccccccccc
Confidence 335666 9999999998 899999998 788886
Q ss_pred ccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhh-hhhcccCCCCchhh
Q 048145 292 NVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAE-WALKIDNEGYTILH 340 (578)
Q Consensus 292 ~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~~d~~G~T~Lh 340 (578)
.+|.+|+||||+|+++|+.+++++|+ +.|+ +.......+.+|-|
T Consensus 228 ~~d~~g~TpL~~A~~~g~~~iv~~Ll-----~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 228 ITNRKGLTPLALAASSGKIGVLAYIL-----QREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHH-----HHHTC--------------
T ss_pred ccCCCCCCHHHHHHHhChHHHHHHHH-----HCCCCCchhhhhhhhhccC
Confidence 58999999999999999999999999 4555 66766666666543
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=5.9e-32 Score=259.16 Aligned_cols=217 Identities=15% Similarity=0.157 Sum_probs=171.7
Q ss_pred hccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccC
Q 048145 63 MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTA 137 (578)
Q Consensus 63 ~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~ 137 (578)
+.+|.+|+||||+|+..|+.++++.|++.+... ..+++.+|..|.||||+|+..|+.+++++|++. ..+..
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 77 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD----LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR 77 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC---------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc----HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence 357889999999999999999999999987611 026889999999999999999999999999987 56789
Q ss_pred CccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccc
Q 048145 138 AISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVD 217 (578)
Q Consensus 138 g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (578)
|.||||+|+ ..|+ .+++++|+++|.+.....
T Consensus 78 g~t~L~~A~--------~~~~----------------~~~v~~Ll~~~~~~~~~~------------------------- 108 (236)
T 1ikn_D 78 GNTPLHLAC--------EQGC----------------LASVGVLTQSCTTPHLHS------------------------- 108 (236)
T ss_dssp CCCHHHHHH--------HHTC----------------HHHHHHHHHSTTTTSSSC-------------------------
T ss_pred CCCHHHHHH--------HcCC----------------HHHHHHHHhcccchhHHH-------------------------
Confidence 999999999 6677 899999999887543210
Q ss_pred cchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccccc-C
Q 048145 218 VSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNE-K 296 (578)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~-~ 296 (578)
..+..+..|.| |||+|+..|+.+++++|++ .+++++..|. .
T Consensus 109 ------------------------------~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~ 150 (236)
T 1ikn_D 109 ------------------------------ILKATNYNGHT-------CLHLASIHGYLGIVELLVS-LGADVNAQEPCN 150 (236)
T ss_dssp ------------------------------GGGCCCTTCCC-------HHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTT
T ss_pred ------------------------------HhhccCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCC
Confidence 01222335555 9999999999999999998 7899999998 9
Q ss_pred CChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCC
Q 048145 297 GQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPP 376 (578)
Q Consensus 297 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~ 376 (578)
|+||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+..++. +.++.++..
T Consensus 151 g~tpL~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~tpl~~A~~~~~~-------------------~~~~~Ll~~ 206 (236)
T 1ikn_D 151 GRTALHLAVDLQNPDLVSLLL-----KCGADVNRVTYQGYSPYQLTWGRPST-------------------RIQQQLGQL 206 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHHHH-----TTTCCSCCCCTTCCCGGGGCTTSSCH-------------------HHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHH-----HcCCCCCcccCCCCCHHHHHHccCch-------------------HHHHHHHHc
Confidence 999999999999999999999 56778999999999999999999865 334444444
Q ss_pred cccc---ccccCCCCChhhhhh
Q 048145 377 HYAM---HRDKNKRMTANDLFD 395 (578)
Q Consensus 377 ~~~~---~~n~~~g~t~~~l~~ 395 (578)
+... ..+. +|.|+.|...
T Consensus 207 ga~~~~~~~~~-~~~~~~~~~~ 227 (236)
T 1ikn_D 207 TLENLQMLPES-EDEESYDTES 227 (236)
T ss_dssp SCGGGSSCCCC-CTTTCCCCC-
T ss_pred chhhhhcCCcc-chHHHHhhhc
Confidence 4322 3344 8888877543
No 44
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=4.9e-31 Score=260.24 Aligned_cols=209 Identities=20% Similarity=0.239 Sum_probs=180.6
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.+..+++. +. ..+.. +|.||||+|+..|+.++|++|+++ +++ ++.+|..|+||||+|+..|
T Consensus 38 A~~~g~~~~v~~Ll~~--g~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~-ga~-----~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 38 AIADNNVRLVCTLLNA--GA-LKNLL--ENEFPLHQAATLEDTKIVKILLFS-GLD-----DSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHTTCHHHHHHHHHT--TG-GGSCC--TTCCHHHHHTTSSSCHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC--CC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCcHHHHHHHcC
Confidence 5788999977777776 33 33333 599999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCC-CCHHHHHHHcCcHHHHHHHHHh---cccc-CCccHHHHHHHHHHHHHhc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLG-ETPLYRAASVGKIEALRYFAEQ---VNQT-AAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g-~TpLh~A~~~g~~~iv~~Ll~~---~~~~-~g~t~Lh~A~~~~~~~~~~ 155 (578)
+.+++++|+++|+ +++.++..| .||||+|+..|+.+++++|++. ..+. .|.||||+|+ .
T Consensus 107 ~~~~v~~Ll~~ga--------~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~--------~ 170 (285)
T 3kea_A 107 NMQTVKLFVKKNW--------RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI--------K 170 (285)
T ss_dssp CHHHHHHHHHHCG--------GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHH--------H
T ss_pred CHHHHHHHHhcCC--------CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHH--------H
Confidence 9999999999999 899999999 8999999999999999999998 3333 8999999999 7
Q ss_pred cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT 235 (578)
Q Consensus 156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (578)
.|+ .+++++|+++|++++..
T Consensus 171 ~g~----------------~~~v~~Ll~~gad~n~~-------------------------------------------- 190 (285)
T 3kea_A 171 NGH----------------VDMMILLLDYMTSTNTN-------------------------------------------- 190 (285)
T ss_dssp TTC----------------HHHHHHHHHHHHHTCTT--------------------------------------------
T ss_pred cCh----------------HHHHHHHHHcCCCCCcc--------------------------------------------
Confidence 788 89999999999876543
Q ss_pred cccccccCcccccccccccccccccccchhH-HHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHH
Q 048145 236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRI-LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFE 314 (578)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~p-Lh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~ 314 (578)
|..|.| | ||+|+..|+.+++++|++ .|++++..|. .|+..|+.++++
T Consensus 191 -----------------~~~g~t-------~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a~~~~~~~iv~ 238 (285)
T 3kea_A 191 -----------------NSLLFI-------PDIKLAIDNKDIEMLQALFK-YDINIYSANL-------ENVLLDDAEIAK 238 (285)
T ss_dssp -----------------CCCBCC-------TTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GGGTTTCHHHHH
T ss_pred -----------------cCCCCC-------hHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hhhhcCCHHHHH
Confidence 235555 7 999999999999999998 8999999883 567799999999
Q ss_pred HHHHhhchhhhhhhhcccC
Q 048145 315 IIKEKMQLSLAEWALKIDN 333 (578)
Q Consensus 315 ~Ll~~~~~~~~~~~~~~d~ 333 (578)
+|+ +.|.+++..+.
T Consensus 239 ~Ll-----~~g~~~~~~~~ 252 (285)
T 3kea_A 239 MII-----EKHVEYKSDSY 252 (285)
T ss_dssp HHH-----HHHHHHTTCTT
T ss_pred HHH-----HcCCCCCCccc
Confidence 999 45556665443
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.6e-30 Score=248.39 Aligned_cols=188 Identities=20% Similarity=0.170 Sum_probs=159.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhh-cCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----------cccc
Q 048145 68 NGNTAVHALATINNVDVAKTLVEF-SKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----------VNQT 136 (578)
Q Consensus 68 ~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----------~~~~ 136 (578)
.|+||||+|++.|+.++++.|++. |. +++.+|..|.||||+|+.+|+.+++++|++. ..+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 73 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGC--------EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY 73 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCS--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCC--------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC
Confidence 589999999999999999999998 77 8999999999999999999999999999998 1245
Q ss_pred CCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccccc
Q 048145 137 AAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVV 216 (578)
Q Consensus 137 ~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (578)
.|.||||+|+ ..|+ .+++++|+++|++++..+... .++
T Consensus 74 ~g~t~L~~A~--------~~~~----------------~~~v~~Ll~~g~~~~~~~~~~-----~~~------------- 111 (232)
T 2rfa_A 74 EGQTALHIAV--------INQN----------------VNLVRALLARGASVSARATGS-----VFH------------- 111 (232)
T ss_dssp TTCCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCCCSG-----GGS-------------
T ss_pred CCcCHHHHHH--------HcCC----------------HHHHHHHHhCCCCCCcccCCc-----cee-------------
Confidence 8999999999 7788 899999999999887652210 000
Q ss_pred ccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccC
Q 048145 217 DVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEK 296 (578)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~ 296 (578)
...+..|..|.| |||+|+..|+.+++++|++ .|++++.+|.+
T Consensus 112 ------------------------------~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~ 153 (232)
T 2rfa_A 112 ------------------------------YRPHNLIYYGEH-------PLSFAACVGSEEIVRLLIE-HGADIRAQDSL 153 (232)
T ss_dssp ------------------------------CCTTCSCCCCSS-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred ------------------------------ecccccccCCCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC
Confidence 011222335555 9999999999999999998 89999999999
Q ss_pred CChHHHHHHHhCcHHHH----HHHHHhhchhhhhhh------hcccCCCCchhhHHHhcccc
Q 048145 297 GQNILHVAIMYRQLEIF----EIIKEKMQLSLAEWA------LKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 297 G~t~Lh~A~~~g~~~iv----~~Ll~~~~~~~~~~~------~~~d~~G~T~LhlA~~~~~~ 348 (578)
|+||||+|+.+|+.+++ ++|+ +.|++. +.+|.+|+||||+|+..|+.
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll-----~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~ 210 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLL-----SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHH-----HTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHH-----hcCCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence 99999999999999988 8887 445555 68999999999999999975
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4.1e-31 Score=256.59 Aligned_cols=190 Identities=18% Similarity=0.149 Sum_probs=160.4
Q ss_pred CCCcHHHHHHhcCChH----HHHHHHccCCCchhhhhhhc----cCCCCChHHHHHHHc---CCHHHHHHHHhhcCCCCC
Q 048145 29 NGECAIHVAAAMEDPE----LIKKFLGRLPVEKRLEALMQ----TDDNGNTAVHALATI---NNVDVAKTLVEFSKQSND 97 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~~l~~----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~ 97 (578)
.|+||||.|+..|+.+ ++++|++. +.+ ++. +|.+|+||||+|+.. |+.+++++|++.|++.+.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~-----i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~ 74 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKY-----LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN 74 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCC-----TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCC-----cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence 4889999999999997 55666667 888 888 899999999999999 999999999999983221
Q ss_pred CCC---CCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccC-------------CccHHHHHHHHHHHHHhcc
Q 048145 98 ADK---NPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTA-------------AISILSSKMYIAIWRQVIQ 156 (578)
Q Consensus 98 ~~~---~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~-------------g~t~Lh~A~~~~~~~~~~~ 156 (578)
.+. .....+|..|.||||+|+..|+.+++++|++. ..+.. |.||||+|+ ..
T Consensus 75 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~--------~~ 146 (256)
T 2etb_A 75 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA--------CT 146 (256)
T ss_dssp SSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH--------HT
T ss_pred hhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH--------Hc
Confidence 110 00113457899999999999999999999998 33443 999999999 77
Q ss_pred CchHHHHHHHhhhhhHHHHHHHHHHHh---ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145 157 GCPAIKKIWEKKQIHKKAVALVKMLVE---KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG 233 (578)
Q Consensus 157 G~~~~~~~~~~~~~~~~~~~~v~~Ll~---~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (578)
|+ .+++++|++ +|++++..
T Consensus 147 ~~----------------~~~v~~Ll~~~~~ga~~n~~------------------------------------------ 168 (256)
T 2etb_A 147 KQ----------------WDVVTYLLENPHQPASLEAT------------------------------------------ 168 (256)
T ss_dssp TC----------------HHHHHHHHHCSSCCCCTTCC------------------------------------------
T ss_pred CC----------------HHHHHHHHhccccCCCcCcc------------------------------------------
Confidence 88 899999999 77776543
Q ss_pred CccccccccCcccccccccccccccccccchhHHHHHHh--cCHHH-------HHHHHHHHCCCcc-------cccccCC
Q 048145 234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVS--NGIIE-------ILEEIRHKYPQTL-------DNVNEKG 297 (578)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~--~G~~~-------iv~~Ll~~~~~~i-------~~~d~~G 297 (578)
|..|+| |||+|+. .|+.+ ++++|++ .|+++ +.+|.+|
T Consensus 169 -------------------d~~g~T-------pLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g 221 (256)
T 2etb_A 169 -------------------DSLGNT-------VLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQG 221 (256)
T ss_dssp -------------------CTTSCC-------HHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTS
T ss_pred -------------------CCCCCC-------HHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCC
Confidence 335666 9999999 88888 9999998 78888 9999999
Q ss_pred ChHHHHHHHhCcHHHHHHHH
Q 048145 298 QNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 298 ~t~Lh~A~~~g~~~iv~~Ll 317 (578)
+||||+|+++|+.+++++|+
T Consensus 222 ~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 222 LTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.2e-30 Score=233.84 Aligned_cols=158 Identities=22% Similarity=0.306 Sum_probs=134.6
Q ss_pred cHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145 32 CAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE 111 (578)
Q Consensus 32 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~ 111 (578)
++|+.||+.|+.++|+.|++. |++ ++.+|.+|+||||+|+..|+.++++.|+++|+ +++.+|..|.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gad-----vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga--------d~~~~d~~g~ 71 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GAD-----VNASDSDGRTPLHHAAENGHKEVVKLLISKGA--------DVNAKDSDGR 71 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc--------chhhhccCCC
Confidence 579999999999999999998 999 99999999999999999999999999999999 8999999999
Q ss_pred CHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145 112 TPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT 191 (578)
Q Consensus 112 TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~ 191 (578)
||||+|+.+|+.+++ ++|+++|++++..
T Consensus 72 TpLh~A~~~g~~~~v----------------------------------------------------~~Ll~~gadvn~~ 99 (169)
T 4gpm_A 72 TPLHHAAENGHKEVV----------------------------------------------------KLLISKGADVNAK 99 (169)
T ss_dssp CHHHHHHHTTCHHHH----------------------------------------------------HHHHHTTCCTTCC
T ss_pred CHHHHHHHcCCHHHH----------------------------------------------------HHHHHCcCCCCCC
Confidence 999999998875554 4455555554332
Q ss_pred ccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHH
Q 048145 192 HEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAV 271 (578)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa 271 (578)
|.+|+| |||+|+
T Consensus 100 -------------------------------------------------------------d~~G~T-------pLh~A~ 111 (169)
T 4gpm_A 100 -------------------------------------------------------------DSDGRT-------PLHHAA 111 (169)
T ss_dssp -------------------------------------------------------------CTTSCC-------HHHHHH
T ss_pred -------------------------------------------------------------CCCCCC-------HHHHHH
Confidence 335666 999999
Q ss_pred hcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhh
Q 048145 272 SNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWAL 329 (578)
Q Consensus 272 ~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 329 (578)
+.|+.+++++|++ .|++++.+|.+|+||||+|+++|+.+++++|+ +.|++++
T Consensus 112 ~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll-----~~GA~ie 163 (169)
T 4gpm_A 112 ENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLE-----KQGGWLE 163 (169)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-----TC-----
T ss_pred HcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-----HCCCCcC
Confidence 9999999999998 89999999999999999999999999999999 4565554
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=3.6e-29 Score=233.30 Aligned_cols=179 Identities=17% Similarity=0.146 Sum_probs=159.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCcc
Q 048145 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAIS 140 (578)
Q Consensus 66 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t 140 (578)
+..+.||||.|+..|+.++++.|++.++ .+++.+|..|.||||+|+.+|+.+++++|++. ..+..|.|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 74 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTT-------YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDS 74 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTT-------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCC-------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 3578999999999999999999999987 68999999999999999999999999999998 56788999
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccccccCCCCCCchhhcccCCCCccccccccc
Q 048145 141 ILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVS 219 (578)
Q Consensus 141 ~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (578)
|||+|+ ..|+ .+++++|++++ .+++..
T Consensus 75 ~l~~A~--------~~~~----------------~~~~~~Ll~~~~~~~~~~---------------------------- 102 (201)
T 3hra_A 75 PYLYAG--------AQGR----------------TEILAYMLKHATPDLNKH---------------------------- 102 (201)
T ss_dssp HHHHHH--------HTTC----------------HHHHHHHHHHSCCCTTCC----------------------------
T ss_pred HHHHHH--------HcCC----------------HHHHHHHHhccCcccccc----------------------------
Confidence 999999 7788 89999999643 333222
Q ss_pred hhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCCh
Q 048145 220 AGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQN 299 (578)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t 299 (578)
|..|.| |||+|+..|+.+++++|++..+.+++.+|..|+|
T Consensus 103 ---------------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 142 (201)
T 3hra_A 103 ---------------------------------NRYGGN-------ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142 (201)
T ss_dssp ---------------------------------CTTSCC-------SHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred ---------------------------------cCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence 235556 9999999999999999999766999999999999
Q ss_pred HHHHHHHhCc-----HHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 300 ILHVAIMYRQ-----LEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 300 ~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
|||+|+..++ .+++++|+ +.|++++.+|.+|+||||+|+..++.
T Consensus 143 ~L~~A~~~~~~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~ 191 (201)
T 3hra_A 143 ALIEAVGLREGNQLYQDIVKLLM-----ENGADQSIKDNSGRTAMDYANQKGYT 191 (201)
T ss_dssp HHHHHHHSSCCSHHHHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHHhccchhhHHHHHHHHH-----HCCCCCCccCCCCCCHHHHHHHcCCH
Confidence 9999999998 99999999 56778999999999999999999865
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=6.8e-30 Score=250.49 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=158.4
Q ss_pred hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc----cCCCCCCCHHHHHHHc---CcHHHHHHHHHhc-
Q 048145 62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV----VENKLGETPLYRAASV---GKIEALRYFAEQV- 133 (578)
Q Consensus 62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~----~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~- 133 (578)
.+..|..|+||||+||+.|+.++|+.|++.+.+.. .+++ ..|..|.||||+|+.+ |+.+++++|++..
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK----KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC----CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc----cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 56789999999999999999999999998653111 1332 4588999999999987 9999999999971
Q ss_pred ---------------cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCC
Q 048145 134 ---------------NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPG 198 (578)
Q Consensus 134 ---------------~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 198 (578)
.|..|.||||+|+ ..|+ .+++++|+++|++++..+....
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~--------~~g~----------------~~~v~~Ll~~ga~~~~~~~~~~-- 135 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTALHIAI--------ERRN----------------MTLVTLLVENGADVQAAANGDF-- 135 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCBCSGG--
T ss_pred cccchhHHhhcccccccCCCCCHHHHHH--------HcCC----------------HHHHHHHHHCCCCcCccccccc--
Confidence 3568999999999 7788 9999999999998876632110
Q ss_pred CchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHH
Q 048145 199 VTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEI 278 (578)
Q Consensus 199 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~i 278 (578)
. ...+....+..|.| |||+|+..|+.++
T Consensus 136 ---~------------------------------------------~~~~~~~~~~~g~t-------pL~~A~~~g~~~~ 163 (273)
T 2pnn_A 136 ---F------------------------------------------KKTKGRPGFYFGEL-------PLSLAACTNQLAI 163 (273)
T ss_dssp ---G------------------------------------------SSCSSSCCCCSCBS-------HHHHHHHTTCHHH
T ss_pred ---c------------------------------------------ccccccccccCCCC-------HHHHHHHcCCHHH
Confidence 0 00000111224444 9999999999999
Q ss_pred HHHHHHH--CCCcccccccCCChHHHHHHHhCc---------HHHHHHHHHhhchhhhhhhh-------cccCCCCchhh
Q 048145 279 LEEIRHK--YPQTLDNVNEKGQNILHVAIMYRQ---------LEIFEIIKEKMQLSLAEWAL-------KIDNEGYTILH 340 (578)
Q Consensus 279 v~~Ll~~--~~~~i~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~~~~~-------~~d~~G~T~Lh 340 (578)
+++|++. .|++++.+|.+|+||||+|++.|+ .+++++|+ +.|++++ .+|.+|+||||
T Consensus 164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll-----~~ga~~n~~~~~~~~~d~~g~TpL~ 238 (273)
T 2pnn_A 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL-----ILGAKLHPTLKLEEITNRKGLTPLA 238 (273)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-----HHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH-----HhhhhcccccccccccCCCCCCHHH
Confidence 9999985 789999999999999999999998 79999999 5677786 59999999999
Q ss_pred HHHhcccc
Q 048145 341 QVADMKYY 348 (578)
Q Consensus 341 lA~~~~~~ 348 (578)
+|+..|+.
T Consensus 239 ~A~~~g~~ 246 (273)
T 2pnn_A 239 LAASSGKI 246 (273)
T ss_dssp HHHHTTCH
T ss_pred HHHHhChH
Confidence 99999975
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=1.8e-29 Score=244.96 Aligned_cols=189 Identities=17% Similarity=0.116 Sum_probs=158.4
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHhhcCCCCCCCCCCccc----CCCCCCCHHHHHHHc---CcHHHHHHHHHh---c
Q 048145 68 NGNTAVHALATINNVD----VAKTLVEFSKQSNDADKNPLVV----ENKLGETPLYRAASV---GKIEALRYFAEQ---V 133 (578)
Q Consensus 68 ~G~TpLh~Aa~~g~~~----iv~~Ll~~g~~~~~~~~~~~~~----~n~~g~TpLh~A~~~---g~~~iv~~Ll~~---~ 133 (578)
.|+||||.||+.|+.+ ++++|++.|. +++. +|..|.||||+|+.+ |+.+++++|++. .
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--------~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 72 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK--------YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS 72 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--------CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc
Confidence 4899999999999997 6677778898 7887 899999999999999 999999999998 1
Q ss_pred -------------cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCc
Q 048145 134 -------------NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVT 200 (578)
Q Consensus 134 -------------~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 200 (578)
.|..|.||||+|+ ..|+ .+++++|+++|++++..+.... .
T Consensus 73 ~~~~~~~~~~~~~~d~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~ga~~~~~~~~~~---~ 125 (256)
T 2etb_A 73 GNPKPLVNAQCTDEFYQGHSALHIAI--------EKRS----------------LQCVKLLVENGADVHLRACGRF---F 125 (256)
T ss_dssp TCSSCGGGCCCCSTTTTTCCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCCCSGG---G
T ss_pred cchhhhcccccccccccCCCHHHHHH--------HcCC----------------HHHHHHHHHcCCCCCccccccc---c
Confidence 1257999999999 7788 9999999999998876522100 0
Q ss_pred hhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHH
Q 048145 201 EISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILE 280 (578)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~ 280 (578)
..+....|..|.| |||+|+..|+.++++
T Consensus 126 ---------------------------------------------~~~~~~~~~~g~t-------pL~~A~~~~~~~~v~ 153 (256)
T 2etb_A 126 ---------------------------------------------QKHQGTCFYFGEL-------PLSLAACTKQWDVVT 153 (256)
T ss_dssp ---------------------------------------------SCCSSSCCCSCSS-------HHHHHHHTTCHHHHH
T ss_pred ---------------------------------------------cccccccccCCCC-------HHHHHHHcCCHHHHH
Confidence 0000111123555 999999999999999
Q ss_pred HHHHH--CCCcccccccCCChHHHHHHH--hCcHH-------HHHHHHHhhchhhhhhh-------hcccCCCCchhhHH
Q 048145 281 EIRHK--YPQTLDNVNEKGQNILHVAIM--YRQLE-------IFEIIKEKMQLSLAEWA-------LKIDNEGYTILHQV 342 (578)
Q Consensus 281 ~Ll~~--~~~~i~~~d~~G~t~Lh~A~~--~g~~~-------iv~~Ll~~~~~~~~~~~-------~~~d~~G~T~LhlA 342 (578)
+|++. .|++++.+|.+|+||||+|+. +++.+ ++++|+ +.|+++ +.+|.+|+||||+|
T Consensus 154 ~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll-----~~ga~~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL-----QMGARLCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-----HHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHH-----HcCCCcccccccccccCCCCCCHHHHH
Confidence 99986 789999999999999999999 78888 999999 667788 99999999999999
Q ss_pred Hhcccc
Q 048145 343 ADMKYY 348 (578)
Q Consensus 343 ~~~~~~ 348 (578)
+..|+.
T Consensus 229 ~~~g~~ 234 (256)
T 2etb_A 229 AKEGKI 234 (256)
T ss_dssp HHTTCH
T ss_pred HHhCCH
Confidence 999975
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=8.2e-30 Score=247.94 Aligned_cols=192 Identities=16% Similarity=0.147 Sum_probs=160.5
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHc----cCCCchhhhhhhccC----CCCChHHHHHH---HcCCHHHHHHHHhhcCCC
Q 048145 27 TFNGECAIHVAAAMEDPELIKKFLG----RLPVEKRLEALMQTD----DNGNTAVHALA---TINNVDVAKTLVEFSKQS 95 (578)
Q Consensus 27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~l~~~d----~~G~TpLh~Aa---~~g~~~iv~~Ll~~g~~~ 95 (578)
+..|+|+||.|++.|+.+.|+.|++ . +.+ ++.++ ..|+||||+|+ +.|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 75 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKR-----LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCC-----TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCC-----cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence 5678999999999999996666655 6 777 77665 77999999999 779999999999998622
Q ss_pred CCCC---CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccc--------------cCCccHHHHHHHHHHHHH
Q 048145 96 NDAD---KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQ--------------TAAISILSSKMYIAIWRQ 153 (578)
Q Consensus 96 ~~~~---~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~--------------~~g~t~Lh~A~~~~~~~~ 153 (578)
.... ...++..|..|.||||+|+..|+.+++++|++. ..+ ..|.||||+|+
T Consensus 76 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~------- 148 (260)
T 3jxi_A 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA------- 148 (260)
T ss_dssp TCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH-------
T ss_pred cchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH-------
Confidence 1100 013556677899999999999999999999998 334 47999999999
Q ss_pred hccCchHHHHHHHhhhhhHHHHHHHHHHHh---ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHH
Q 048145 154 VIQGCPAIKKIWEKKQIHKKAVALVKMLVE---KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQV 230 (578)
Q Consensus 154 ~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~---~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (578)
..|+ .+++++|++ +|++++..
T Consensus 149 -~~g~----------------~~~v~~Ll~~~~~ga~~~~~--------------------------------------- 172 (260)
T 3jxi_A 149 -CTNQ----------------PHIVHYLTENGHKQADLRRQ--------------------------------------- 172 (260)
T ss_dssp -HTTC----------------HHHHHHHHHCSSCCCCTTCC---------------------------------------
T ss_pred -HcCC----------------HHHHHHHHhccccCCCCccc---------------------------------------
Confidence 7788 899999999 77766543
Q ss_pred hcCCccccccccCcccccccccccccccccccchhHHHHHHhcCH---------HHHHHHHHHHCCCcc-------cccc
Q 048145 231 KKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI---------IEILEEIRHKYPQTL-------DNVN 294 (578)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~---------~~iv~~Ll~~~~~~i-------~~~d 294 (578)
|..|+| |||+|+..|+ .+++++|++ .|+++ +..|
T Consensus 173 ----------------------d~~g~T-------pLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d 222 (260)
T 3jxi_A 173 ----------------------DSRGNT-------VLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLN 222 (260)
T ss_dssp ----------------------CTTSCC-------HHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCC
T ss_pred ----------------------CCCCCc-------HHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhccc
Confidence 335666 9999998887 799999998 77888 7899
Q ss_pred cCCChHHHHHHHhCcHHHHHHHH
Q 048145 295 EKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 295 ~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
.+|+||||+|+++|+.+++++|+
T Consensus 223 ~~g~tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 223 NDGLSPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999
No 52
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.4e-28 Score=223.41 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=140.1
Q ss_pred CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL 109 (578)
Q Consensus 30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~ 109 (578)
+.||||.|+..|+.++++.|++..+.. ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~~ 68 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNL-----VNKPDERGFTPLIWASAFGEIETVRFLLEWGA--------DPHILAKE 68 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGG-----GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC--------CTTCCCTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCccc-----ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------Cchhhccc
Confidence 468999999999999999999985555 78889999999999999999999999999999 88999999
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145 110 GETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC 189 (578)
Q Consensus 110 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~ 189 (578)
|.||||+|+.+|+.+++++| +++|++++
T Consensus 69 g~t~L~~A~~~~~~~~v~~L----------------------------------------------------l~~g~~~~ 96 (172)
T 3v30_A 69 RESALSLASTGGYTDIVGLL----------------------------------------------------LERDVDIN 96 (172)
T ss_dssp CCCHHHHHHHTTCHHHHHHH----------------------------------------------------HTTTCCTT
T ss_pred CCCHHHHHHHCCCHHHHHHH----------------------------------------------------HHcCCCCC
Confidence 99999999998886555555 44444433
Q ss_pred ccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHH
Q 048145 190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF 269 (578)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~ 269 (578)
.. |..|.| |||+
T Consensus 97 ~~-------------------------------------------------------------~~~g~t-------~L~~ 108 (172)
T 3v30_A 97 IY-------------------------------------------------------------DWNGGT-------PLLY 108 (172)
T ss_dssp CC-------------------------------------------------------------CTTSCC-------HHHH
T ss_pred CC-------------------------------------------------------------CCCCCC-------HHHH
Confidence 22 235566 9999
Q ss_pred HHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCch
Q 048145 270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTI 338 (578)
Q Consensus 270 Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~ 338 (578)
|+..|+.+++++|++ .|++++..|.+|+||||+|+.+|+.+++++|+ +.++++..++..|.||
T Consensus 109 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~-----~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 109 AVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIE-----NHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-----HHHHHHSCC-------
T ss_pred HHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHH-----HHHHHHhcccCCCCCC
Confidence 999999999999998 89999999999999999999999999999999 5677789999999887
No 53
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=248.34 Aligned_cols=189 Identities=21% Similarity=0.205 Sum_probs=165.1
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK 108 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~ 108 (578)
...+++|.|+..|+.+.++.+++. .. ...++.+|.+|+||||+||..|+.+++++|++.|+ .+++..|.
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~-~~---~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-------~~~~~~~~ 143 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSAR-LL---DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGV-------CKVDKQNR 143 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHH-HH---HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-------CCTTCCCT
T ss_pred HhccCCCHHHHHHHHHHHHHHHHH-HH---hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-------CcCCCCCC
Confidence 356888999999999999999876 22 13388999999999999999999999999999998 68999999
Q ss_pred CCCCHHHHHH-----HcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHH
Q 048145 109 LGETPLYRAA-----SVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALV 178 (578)
Q Consensus 109 ~g~TpLh~A~-----~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v 178 (578)
.|.||||+|+ ..++.+++++|++. ..+..|.||||+|+ ..|+ .+++
T Consensus 144 ~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~--------~~g~----------------~~~v 199 (276)
T 4hbd_A 144 AGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV--------SHGR----------------VDVV 199 (276)
T ss_dssp TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH--------HTTC----------------HHHH
T ss_pred CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH--------HcCC----------------HHHH
Confidence 9999999999 67889999999988 45677999999999 7777 8999
Q ss_pred HHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccccc
Q 048145 179 KMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMT 258 (578)
Q Consensus 179 ~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t 258 (578)
++|+++|++++.. |..|+|
T Consensus 200 ~~Ll~~gad~n~~-------------------------------------------------------------d~~G~T 218 (276)
T 4hbd_A 200 KALLACEADVNVQ-------------------------------------------------------------DDDGST 218 (276)
T ss_dssp HHHHHTTCCTTCC-------------------------------------------------------------CTTSCC
T ss_pred HHHHhCCCCCCCC-------------------------------------------------------------CCCCCC
Confidence 9999998876543 235666
Q ss_pred ccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhh
Q 048145 259 SSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKM 320 (578)
Q Consensus 259 ~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~ 320 (578)
|||+|+..|+.+++++|++..|++++.+|.+|+||||+|+++|+.+++++|+++.
T Consensus 219 -------pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 219 -------ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp -------HHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred -------HHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999998789999999999999999999999999999999443
No 54
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=1e-28 Score=223.00 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=135.3
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.+++. +..++.+|.+|.||||+|+..|+.++++.|++. +++ ++.+|.+|+||||+|++.|
T Consensus 11 Aa~~G~~~~v~~Ll~~---Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad-----~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 11 AAENGNKDRVKDLIEN---GADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GAD-----VNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccc-----hhhhccCCCCHHHHHHHcC
Confidence 6889999988888887 455688899999999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~ 155 (578)
+.+++++|+++|+ +++.+|.+|+||||+|+.+|+.+++++|++. ..|.+|.||||+|+ .
T Consensus 82 ~~~~v~~Ll~~ga--------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~--------~ 145 (169)
T 4gpm_A 82 HKEVVKLLISKGA--------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR--------E 145 (169)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------H
T ss_pred CHHHHHHHHHCcC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH--------H
Confidence 9999999999999 8999999999999999999999999999998 67899999999999 7
Q ss_pred cCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT 191 (578)
Q Consensus 156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~ 191 (578)
.|+ .+++++|+++|++++..
T Consensus 146 ~g~----------------~~iv~~Ll~~GA~ie~~ 165 (169)
T 4gpm_A 146 HGN----------------EEVVKLLEKQGGWLEHH 165 (169)
T ss_dssp TTC----------------HHHHHHHHTC-------
T ss_pred cCC----------------HHHHHHHHHCCCCcCCC
Confidence 788 89999999999988654
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.6e-28 Score=225.85 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=137.1
Q ss_pred hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145 20 EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD 99 (578)
Q Consensus 20 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~ 99 (578)
+...+..|..|.||||+|+..|+.++|++|++. +.+ ++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------ 92 (192)
T 2rfm_A 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDK-----LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS------ 92 (192)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC------
T ss_pred HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccc-----cccccccCccHHHHHHHcCCHHHHHHHHHCCC------
Confidence 345677888899999999999999999999988 777 88888889999999999999999999999888
Q ss_pred CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHH
Q 048145 100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVK 179 (578)
Q Consensus 100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~ 179 (578)
+++.+|..|.||||+|+..|+.+++++
T Consensus 93 --~~~~~~~~g~t~L~~A~~~~~~~~v~~--------------------------------------------------- 119 (192)
T 2rfm_A 93 --NVNTKDFSGKTPLMWSIIFGYSEMSYF--------------------------------------------------- 119 (192)
T ss_dssp --CTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------------------------------------
T ss_pred --CCCCCCCCCCcHHHHHHHcCCHHHHHH---------------------------------------------------
Confidence 788888888888888888877555544
Q ss_pred HHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccc
Q 048145 180 MLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTS 259 (578)
Q Consensus 180 ~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~ 259 (578)
|+++|++++.. |..|.|
T Consensus 120 -Ll~~g~~~~~~-------------------------------------------------------------~~~g~t- 136 (192)
T 2rfm_A 120 -LLEHGANVNDR-------------------------------------------------------------NLEGET- 136 (192)
T ss_dssp -HHHTTCCSSCC-------------------------------------------------------------CTTCCC-
T ss_pred -HHHCCCCCCCC-------------------------------------------------------------CCCCCC-
Confidence 44555544322 235566
Q ss_pred cccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 260 SMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 260 ~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.+++++|+
T Consensus 137 ------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 137 ------PLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp ------HHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred ------HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999998 79999999999999999999999999999998
No 56
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=2e-29 Score=253.80 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=149.4
Q ss_pred hHHHHHHHhcCCchhhhcc-CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCC---H
Q 048145 7 RQGFLRYFAQQTDEELLGY-RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN---V 82 (578)
Q Consensus 7 ~~~~~~ll~~~~~~~~~~~-~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~---~ 82 (578)
.+.+.+++.+ . +..++. .|..|.||||+||..|+.++|++|+++ |++ ++.+|.+|+||||+|+..|+ .
T Consensus 109 ~~~~~~~l~~-~-g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad-----~n~~d~~g~TpLh~A~~~g~~~~~ 180 (327)
T 1sw6_A 109 LQEVNDAFPN-T-QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSN-----RLYGDNMGESCLVKAVKSVNNYDS 180 (327)
T ss_dssp HHHHHHHCTT-S-CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred HHHHHHHHHh-c-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHhcccccH
Confidence 3445566655 2 334455 899999999999999999999999999 999 99999999999999999999 7
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH----cCcHHHHHHHHHh-------------------------c
Q 048145 83 DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS----VGKIEALRYFAEQ-------------------------V 133 (578)
Q Consensus 83 ~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~----~g~~~iv~~Ll~~-------------------------~ 133 (578)
++++.|++.+. .+++.+|..|.||||+|+. .|+.+++++|++. .
T Consensus 181 ~~~~~ll~~~~-------~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~ 253 (327)
T 1sw6_A 181 GTFEALLDYLY-------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253 (327)
T ss_dssp TCHHHHHHHHG-------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred HHHHHHHHhhh-------ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc
Confidence 99999999985 3899999999999999999 8999999999875 1
Q ss_pred cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccc
Q 048145 134 NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEK 213 (578)
Q Consensus 134 ~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (578)
.+..|.||||.|+ . +++|++++
T Consensus 254 ~~~~g~t~L~~a~----------------------------~--~~~Ll~~~---------------------------- 275 (327)
T 1sw6_A 254 KNGERKDSILENL----------------------------D--LKWIIANM---------------------------- 275 (327)
T ss_dssp ------CHHHHHC----------------------------S--HHHHHHHT----------------------------
T ss_pred ccccCCChhHHHH----------------------------H--HHHHHHhC----------------------------
Confidence 3455666666655 1 45555442
Q ss_pred cccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccc
Q 048145 214 KVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNV 293 (578)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~ 293 (578)
++..|..|+| |||+|++.|+.+++++|++ .|++++.+
T Consensus 276 -----------------------------------~n~~d~~G~T-------pLh~A~~~g~~~~v~~Ll~-~Gad~~~~ 312 (327)
T 1sw6_A 276 -----------------------------------LNAQDSNGDT-------CLNIAARLGNISIVDALLD-YGADPFIA 312 (327)
T ss_dssp -----------------------------------TTCCCTTSCC-------HHHHHHHHCCHHHHHHHHH-TTCCTTCC
T ss_pred -----------------------------------CCCCCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCccc
Confidence 1223346666 9999999999999999998 89999999
Q ss_pred ccCCChHHHHHHHhC
Q 048145 294 NEKGQNILHVAIMYR 308 (578)
Q Consensus 294 d~~G~t~Lh~A~~~g 308 (578)
|.+|+||||+|+++|
T Consensus 313 d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 313 NKSGLRPVDFGAGLE 327 (327)
T ss_dssp CTTSCCGGGGTCC--
T ss_pred CCCCCCHHHHHHhcC
Confidence 999999999998765
No 57
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.1e-28 Score=238.00 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=155.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHh----hcCCCCCCCCCCcccCC----CCCCCHHHHHH---HcCcHHHHHHHHHh--
Q 048145 66 DDNGNTAVHALATINNVDVAKTLVE----FSKQSNDADKNPLVVEN----KLGETPLYRAA---SVGKIEALRYFAEQ-- 132 (578)
Q Consensus 66 d~~G~TpLh~Aa~~g~~~iv~~Ll~----~g~~~~~~~~~~~~~~n----~~g~TpLh~A~---~~g~~~iv~~Ll~~-- 132 (578)
|..|.||||.||+.|+.++++.|++ .|+ +++..+ ..|.||||+|+ +.|+.+++++|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~--------~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK--------RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--------CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC--------CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 5678999999999999996555554 888 666555 77999999999 77999999999996
Q ss_pred --------------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCC
Q 048145 133 --------------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPG 198 (578)
Q Consensus 133 --------------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 198 (578)
..|..|.||||+|+ ..|+ .+++++|+++|++++..+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~ga~~~~~~~~~~-- 127 (260)
T 3jxi_A 74 KTGNMREFINSPFRDVYYRGQTALHIAI--------ERRC----------------KHYVELLVEKGADVHAQARGRF-- 127 (260)
T ss_dssp HTTCHHHHHTCCBCCSSEESBCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCCEECC--
T ss_pred cccchHhhhcccccccccCCCCHHHHHH--------HcCC----------------HHHHHHHHhCCCCcCccccccc--
Confidence 12338999999999 7788 9999999999998876632100
Q ss_pred CchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHH
Q 048145 199 VTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEI 278 (578)
Q Consensus 199 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~i 278 (578)
....+... .+..|.||||+|+..|+.++
T Consensus 128 ---------------------------------------------~~~~~~~~-------~~~~g~tpL~~A~~~g~~~~ 155 (260)
T 3jxi_A 128 ---------------------------------------------FQPKDEGG-------YFYFGELPLSLAACTNQPHI 155 (260)
T ss_dssp ---------------------------------------------CSSSCCCC-------SCCSCSSHHHHHHHTTCHHH
T ss_pred ---------------------------------------------cCcccccc-------cccCCCCHHHHHHHcCCHHH
Confidence 00000011 12334449999999999999
Q ss_pred HHHHHHH--CCCcccccccCCChHHHHHHHhCc---------HHHHHHHHHhhchhhhhhh-------hcccCCCCchhh
Q 048145 279 LEEIRHK--YPQTLDNVNEKGQNILHVAIMYRQ---------LEIFEIIKEKMQLSLAEWA-------LKIDNEGYTILH 340 (578)
Q Consensus 279 v~~Ll~~--~~~~i~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~~~~-------~~~d~~G~T~Lh 340 (578)
+++|++. .|++++.+|.+|+||||+|++.++ .+++++|+ +.|+++ +.+|.+|+||||
T Consensus 156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll-----~~ga~~~~~~~~~~~~d~~g~tpL~ 230 (260)
T 3jxi_A 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL-----IKCAKLFPDTNLEALLNNDGLSPLM 230 (260)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH-----HHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH-----HhCcccccccchhhcccCCCCCHHH
Confidence 9999985 789999999999999999999888 79999999 567778 789999999999
Q ss_pred HHHhcccc
Q 048145 341 QVADMKYY 348 (578)
Q Consensus 341 lA~~~~~~ 348 (578)
+|+..|+.
T Consensus 231 ~A~~~g~~ 238 (260)
T 3jxi_A 231 MAAKTGKI 238 (260)
T ss_dssp HHHHTTCH
T ss_pred HHHHcCCH
Confidence 99999975
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.2e-27 Score=216.07 Aligned_cols=154 Identities=17% Similarity=0.164 Sum_probs=136.0
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK 108 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~ 108 (578)
.|.||||.|+..|+.+++++|++. +.+ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~ 67 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENV-----INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA--------DPQLLGK 67 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCC-----cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC--------CCCCcCC
Confidence 588999999999999999999999 888 99999999999999999999999999999998 8889999
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccc
Q 048145 109 LGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDD 188 (578)
Q Consensus 109 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~ 188 (578)
.|.||||+|+.+|+.+++++|++ +|+++
T Consensus 68 ~g~t~L~~A~~~~~~~~v~~Ll~----------------------------------------------------~g~~~ 95 (167)
T 3v31_A 68 GRESALSLACSKGYTDIVKMLLD----------------------------------------------------CGVDV 95 (167)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHH----------------------------------------------------HTCCT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH----------------------------------------------------CCCCC
Confidence 99999999999888666665554 34433
Q ss_pred cccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHH
Q 048145 189 CATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILL 268 (578)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh 268 (578)
+.. |..|.| |||
T Consensus 96 ~~~-------------------------------------------------------------~~~g~t-------~L~ 107 (167)
T 3v31_A 96 NEY-------------------------------------------------------------DWNGGT-------PLL 107 (167)
T ss_dssp TCC-------------------------------------------------------------CTTSCC-------HHH
T ss_pred CcC-------------------------------------------------------------CCCCCC-------HHH
Confidence 222 235566 999
Q ss_pred HHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 269 FAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 269 ~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
+|+..|+.+++++|++ .|++++..|.+|+||||+|+..|+.+++++|+
T Consensus 108 ~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 108 YAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp HHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999998 89999999999999999999999999999999
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.7e-30 Score=247.38 Aligned_cols=198 Identities=17% Similarity=0.039 Sum_probs=152.3
Q ss_pred HHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHh
Q 048145 11 LRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVE 90 (578)
Q Consensus 11 ~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 90 (578)
+.++++...+...+..+.+|.||||.|+..|+.++|++|++. +.+ ++.+|..|+||||+||..|+.+++++|++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MND-----PSQPNEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 344555222333455567788899999999999999999988 888 89999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhh
Q 048145 91 FSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQI 170 (578)
Q Consensus 91 ~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~ 170 (578)
+|+ +++.+|..|.||||+|+.+|+.+++
T Consensus 76 ~ga--------~~n~~d~~g~tpLh~A~~~g~~~~v-------------------------------------------- 103 (229)
T 2vge_A 76 AGA--------NVNSPDSHGWTPLHCAASCNDTVIC-------------------------------------------- 103 (229)
T ss_dssp TTC--------CTTCCCTTCCCHHHHHHHTTCHHHH--------------------------------------------
T ss_pred CCC--------CCCCCCCCCCCHHHHHHHcCCHHHH--------------------------------------------
Confidence 998 8888899999999999988875554
Q ss_pred hHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccc
Q 048145 171 HKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQE 250 (578)
Q Consensus 171 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 250 (578)
++|+++|++++..+
T Consensus 104 --------~~Ll~~ga~~~~~~---------------------------------------------------------- 117 (229)
T 2vge_A 104 --------MALVQHGAAIFATT---------------------------------------------------------- 117 (229)
T ss_dssp --------HHHHTTTCCTTCCC----------------------------------------------------------
T ss_pred --------HHHHHcCCCccccc----------------------------------------------------------
Confidence 45555555543320
Q ss_pred ccccccccccccchhHHHHH--HhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhh-
Q 048145 251 NDTTKDMTSSMRTMRILLFA--VSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEW- 327 (578)
Q Consensus 251 ~~~~~g~t~~~~g~~pLh~A--a~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~- 327 (578)
+..|+| |||+| +..|+.+++++|++ .|++++..|..|.|++|.++..+.. ++|+ ..|++
T Consensus 118 --~~~g~t-------pL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~---~~ll-----~~ga~~ 179 (229)
T 2vge_A 118 --LSDGAT-------AFEKCDPYREGYADCATYLAD-VEQSMGLMNSGAVYALWDYSAEFGD---ELSF-----REGESV 179 (229)
T ss_dssp --SSTTCC-------TGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGEEEESSCBCCSSTT---BCCB-----CTTCEE
T ss_pred --CCCCCC-------HHHHHHHHhcChHHHHHHHHH-cCCCcccccCCchHHHHHHhhcccc---ccCc-----cccccc
Confidence 124555 99999 99999999999998 7889999999999999976555433 4555 34555
Q ss_pred -hhcccCCCCchhhHHHhcccccC
Q 048145 328 -ALKIDNEGYTILHQVADMKYYKQ 350 (578)
Q Consensus 328 -~~~~d~~G~T~LhlA~~~~~~~~ 350 (578)
++.+|.+|+||||+|+..|+.+.
T Consensus 180 ~~~~~d~~G~TpL~~A~~~g~~~~ 203 (229)
T 2vge_A 180 TVLRRDGPEETDWWWAALHGQEGY 203 (229)
T ss_dssp EEEESSCTTCSSEEEEEETTEEEE
T ss_pred cccccCCCcccHHHHHHHcCCcce
Confidence 78899999999999999998643
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.9e-27 Score=215.27 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=135.0
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL 103 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~ 103 (578)
......+.|+||.||+.|+.++|++|+++ +.+ ++.+|..|+||||+|+..|+.+++++|+++|+ ++
T Consensus 8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~ 73 (169)
T 2y1l_E 8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-GAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA--------DV 73 (169)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CT
T ss_pred ccCCCcccchHHHHHHcCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CC
Confidence 34456778999999999999999999998 888 99999999999999999999999999999998 88
Q ss_pred ccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145 104 VVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE 183 (578)
Q Consensus 104 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~ 183 (578)
+.+|..|.||||+|+..|+.+++++|+ +
T Consensus 74 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll----------------------------------------------------~ 101 (169)
T 2y1l_E 74 NAVDHAGMTPLRLAALFGHLEIVEVLL----------------------------------------------------K 101 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHH----------------------------------------------------H
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------H
Confidence 899999999999999988766555554 4
Q ss_pred ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccc
Q 048145 184 KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT 263 (578)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g 263 (578)
+|++++.. |..|.|
T Consensus 102 ~g~~~~~~-------------------------------------------------------------~~~g~t----- 115 (169)
T 2y1l_E 102 NGADVNAN-------------------------------------------------------------DMEGHT----- 115 (169)
T ss_dssp TTCCTTCC-------------------------------------------------------------CTTSCC-----
T ss_pred cCCCCCCC-------------------------------------------------------------CCCCCC-----
Confidence 44443222 235556
Q ss_pred hhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 264 MRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 264 ~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|||+|+..|+.+++++|++ .+++++..|..|+||||+|+++|+.+++++|+
T Consensus 116 --~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 116 --PLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp --HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998 78999999999999999999999999999998
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.9e-27 Score=213.50 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=132.0
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145 28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN 107 (578)
Q Consensus 28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n 107 (578)
....||||.|+..|+.++|++|+++ +.+ ++.+|..|+||||+|+. |+.+++++|+++|+ +++.+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~--------~~~~~~ 67 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQN-NVN-----VNAQNGFGRTALQVMKL-GNPEIARRLLLRGA--------NPDLKD 67 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTS-CCC-----TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC--------CTTCCC
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhC-CCC-----ccccCccCccHHHHHHc-CcHHHHHHHHHcCC--------CCCCCC
Confidence 3567999999999999999999998 888 99999999999999999 99999999999998 889999
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145 108 KLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID 187 (578)
Q Consensus 108 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~ 187 (578)
..|.||||+|+.+|+.+++++|+ ++|++
T Consensus 68 ~~g~t~L~~A~~~~~~~~v~~Ll----------------------------------------------------~~g~~ 95 (162)
T 1ihb_A 68 RTGFAVIHDAARAGFLDTLQTLL----------------------------------------------------EFQAD 95 (162)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHH----------------------------------------------------HTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------HcCCC
Confidence 99999999999988766555554 44444
Q ss_pred ccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHH
Q 048145 188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRIL 267 (578)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pL 267 (578)
++.. |..|.| ||
T Consensus 96 ~~~~-------------------------------------------------------------~~~g~t-------~L 107 (162)
T 1ihb_A 96 VNIE-------------------------------------------------------------DNEGNL-------PL 107 (162)
T ss_dssp TTCC-------------------------------------------------------------CTTSCC-------HH
T ss_pred CCCc-------------------------------------------------------------CCCCCC-------HH
Confidence 3322 235556 99
Q ss_pred HHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 268 LFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 268 h~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|+|++.|+.+++++|++..+..++..|..|+||||+|+++|+.+++++|+
T Consensus 108 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998655557999999999999999999999999999
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.4e-27 Score=216.77 Aligned_cols=169 Identities=18% Similarity=0.123 Sum_probs=141.8
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145 28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN 107 (578)
Q Consensus 28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n 107 (578)
.++.++||.|+..|+.++|+.|++..+.+ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~ 69 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEND-----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA--------RINVMN 69 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccc-----ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC--------CCCCcC
Confidence 46789999999999999999999987777 89999999999999999999999999999998 899999
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145 108 KLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID 187 (578)
Q Consensus 108 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~ 187 (578)
..|.||||+|+..|+.+++++|+ ++|++
T Consensus 70 ~~g~t~L~~A~~~~~~~~v~~Ll----------------------------------------------------~~g~~ 97 (179)
T 3f6q_A 70 RGDDTPLHLAASHGHRDIVQKLL----------------------------------------------------QYKAD 97 (179)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHH----------------------------------------------------HTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------HcCCC
Confidence 99999999999988866555554 44444
Q ss_pred ccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHH
Q 048145 188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRIL 267 (578)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pL 267 (578)
++.. |..|.| ||
T Consensus 98 ~~~~-------------------------------------------------------------d~~g~t-------~L 109 (179)
T 3f6q_A 98 INAV-------------------------------------------------------------NEHGNV-------PL 109 (179)
T ss_dssp TTCC-------------------------------------------------------------CTTSCC-------HH
T ss_pred CCcc-------------------------------------------------------------CCCCCC-------HH
Confidence 3322 235566 99
Q ss_pred HHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC
Q 048145 268 LFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG 335 (578)
Q Consensus 268 h~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G 335 (578)
|+|+..|+.+++++|++ .|++++..|.+|+||||+|+..++.+++++|+ +.|++++..+.++
T Consensus 110 ~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~-----~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 110 HYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAE-----KMGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH-----HTTCCCSCBCCCC
T ss_pred HHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHH-----HhhcCcccCCccc
Confidence 99999999999999998 88999999999999999999999999999999 5666777776655
No 63
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=8e-27 Score=207.47 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=127.9
Q ss_pred CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL 109 (578)
Q Consensus 30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~ 109 (578)
..||||.|++.|+.++|++|++. +.+ ++ .|..|.||||+|+..|+.+++++|++.|+ +++.+|..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~-----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~~ 66 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN-GAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV--------SRDARTKV 66 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH-TCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC--------CTTCCCTT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc-CCC-----CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCCCCCC
Confidence 46899999999999999999998 766 54 58889999999999999999999999998 78888999
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145 110 GETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC 189 (578)
Q Consensus 110 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~ 189 (578)
|.||||+|+..|+.+++++| +++|++++
T Consensus 67 g~t~L~~A~~~~~~~~v~~L----------------------------------------------------l~~g~~~~ 94 (153)
T 1awc_B 67 DRTPLHMAASEGHANIVEVL----------------------------------------------------LKHGADVN 94 (153)
T ss_dssp CCCHHHHHHHHTCHHHHHHH----------------------------------------------------HTTTCCTT
T ss_pred CCCHHHHHHHcChHHHHHHH----------------------------------------------------HHcCCCCC
Confidence 99999999988875555544 44454443
Q ss_pred ccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHH
Q 048145 190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF 269 (578)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~ 269 (578)
.. |..|.| |||+
T Consensus 95 ~~-------------------------------------------------------------~~~g~t-------~L~~ 106 (153)
T 1awc_B 95 AK-------------------------------------------------------------DMLKMT-------ALHW 106 (153)
T ss_dssp CC-------------------------------------------------------------CTTSCC-------HHHH
T ss_pred CC-------------------------------------------------------------CCCCCC-------HHHH
Confidence 22 235566 9999
Q ss_pred HHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHH
Q 048145 270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEII 316 (578)
Q Consensus 270 Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~L 316 (578)
|+..|+.+++++|++ .|++++.+|.+|+||||+|+.+|+.+++++|
T Consensus 107 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 107 ATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999998 7999999999999999999999999999987
No 64
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=4.5e-27 Score=230.63 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=156.1
Q ss_pred cccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCC-chhhhhhhccCCCCChHHHHHH---
Q 048145 2 ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPV-EKRLEALMQTDDNGNTAVHALA--- 77 (578)
Q Consensus 2 a~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~l~~~d~~G~TpLh~Aa--- 77 (578)
+..|+.+.+..++.+ ..+...+..|.+|+||||+|+..|+.++|++|++. +. + ++.+|..|.||||+|+
T Consensus 84 ~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~-----~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 84 LVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS-GVCK-----VDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp HHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCC-----TTCCCTTSCCHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCc-----CCCCCCCCCCHHHHHHHHH
Confidence 345666666666665 33445788999999999999999999999999999 65 8 9999999999999999
Q ss_pred --HcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHH
Q 048145 78 --TINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAI 150 (578)
Q Consensus 78 --~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~ 150 (578)
..|+.++++.|++.|. +.+..+..|.||||+|+.+|+.+++++|++. ..|.+|.||||+|+
T Consensus 157 ~~~~~~~~~v~~Ll~~g~--------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~---- 224 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGN--------INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC---- 224 (276)
T ss_dssp CCSHHHHHHHHHHHHHSC--------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----
T ss_pred hhhhhhHHHHHHHHHcCC--------CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----
Confidence 7789999999999998 7888999999999999999999999999998 57899999999999
Q ss_pred HHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh-ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHH
Q 048145 151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE-KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQ 229 (578)
Q Consensus 151 ~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (578)
..|+ .+++++|++ .|++++..
T Consensus 225 ----~~g~----------------~~iv~~Ll~~~gad~~~~-------------------------------------- 246 (276)
T 4hbd_A 225 ----EHGH----------------KEIAGLLLAVPSCDISLT-------------------------------------- 246 (276)
T ss_dssp ----HHTC----------------HHHHHHHHTSTTCCTTCC--------------------------------------
T ss_pred ----HCCC----------------HHHHHHHHhcCCCCCcCc--------------------------------------
Confidence 6677 899999999 77776543
Q ss_pred HhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCC
Q 048145 230 VKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYP 287 (578)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~ 287 (578)
|..|.| |||+|+..|+.+++++|+++.+
T Consensus 247 -----------------------d~~g~T-------pL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 247 -----------------------DRDGST-------ALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp -----------------------CTTSCC-------HHHHHHHHTCHHHHHHHHHHCC
T ss_pred -----------------------CCCCCC-------HHHHHHHcCCHHHHHHHHhccC
Confidence 335666 9999999999999999998654
No 65
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.1e-26 Score=214.95 Aligned_cols=153 Identities=18% Similarity=0.102 Sum_probs=134.8
Q ss_pred hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145 62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI 141 (578)
Q Consensus 62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~ 141 (578)
++.+|..|+||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+.+|+.+++++|++
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---------- 89 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD--------KLEDKDIEGSTALIWAVKNNRLGIAEKLLS---------- 89 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----------
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc--------ccccccccCccHHHHHHHcCCHHHHHHHHH----------
Confidence 78899999999999999999999999999999 889999999999999999988666665554
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145 142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG 221 (578)
Q Consensus 142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (578)
+|++++..
T Consensus 90 ------------------------------------------~g~~~~~~------------------------------ 97 (192)
T 2rfm_A 90 ------------------------------------------KGSNVNTK------------------------------ 97 (192)
T ss_dssp ------------------------------------------HTCCTTCC------------------------------
T ss_pred ------------------------------------------CCCCCCCC------------------------------
Confidence 34433221
Q ss_pred hHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHH
Q 048145 222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNIL 301 (578)
Q Consensus 222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~L 301 (578)
|..|.| |||+|+..|+.+++++|++ .+++++.+|..|+|||
T Consensus 98 -------------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L 138 (192)
T 2rfm_A 98 -------------------------------DFSGKT-------PLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETPL 138 (192)
T ss_dssp -------------------------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHH
T ss_pred -------------------------------CCCCCc-------HHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHH
Confidence 235566 9999999999999999998 8999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 302 HVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 302 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
|+|+.+|+.+++++|+ +.|++++.+|..|+||||+|+..++.
T Consensus 139 ~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 139 IVASKYGRSEIVKKLL-----ELGADISARDLTGLTAEASARIFGRQ 180 (192)
T ss_dssp HHHHHHTCHHHHHHHH-----HTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHH-----HCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence 9999999999999999 56778999999999999999999865
No 66
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=4.8e-27 Score=211.64 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=133.4
Q ss_pred CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145 26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV 105 (578)
Q Consensus 26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~ 105 (578)
.|.+|.||||.|++.|+.++|+.|++..+.+ ++..|..|+||||+|+..|+.+++++|+++|+ +++.
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~ 70 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-----CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA--------DVHA 70 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-----CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-----ccccccCCCCHHHHHHHcChHHHHHHHHhcCC--------CCCc
Confidence 3667899999999999999999999975667 88888999999999999999999999999998 8899
Q ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc
Q 048145 106 ENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR 185 (578)
Q Consensus 106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g 185 (578)
+|..|.||||+|+..|+.+++++|+ ++|
T Consensus 71 ~~~~g~t~L~~A~~~~~~~~v~~Ll----------------------------------------------------~~g 98 (165)
T 3twr_A 71 KDKGGLVPLHNACSYGHYEVAELLV----------------------------------------------------KHG 98 (165)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHH----------------------------------------------------HTT
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHH----------------------------------------------------hCC
Confidence 9999999999999988766555554 444
Q ss_pred ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchh
Q 048145 186 IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMR 265 (578)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~ 265 (578)
++++.. |..|.|
T Consensus 99 ~~~~~~-------------------------------------------------------------~~~g~t------- 110 (165)
T 3twr_A 99 AVVNVA-------------------------------------------------------------DLWKFT------- 110 (165)
T ss_dssp CCTTCC-------------------------------------------------------------CTTCCC-------
T ss_pred CCCCCc-------------------------------------------------------------CCCCCC-------
Confidence 443322 235556
Q ss_pred HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|||+|+..|+.+++++|++ .+++++.+|.+|+||||+|++ |+.+++++|+
T Consensus 111 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 111 PLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 9999999999999999998 799999999999999999877 8899999998
No 67
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.6e-26 Score=206.13 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=132.1
Q ss_pred CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL 109 (578)
Q Consensus 30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~ 109 (578)
+.||||.|+..|+.++++.|++..+.+ ++.+|..|+||||+ +..|+.+++++|+++|+ +++.+|..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~--------~~~~~~~~ 67 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQV-MMFGSTAIALELLKQGA--------SPNVQDTS 67 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCC-----TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC--------CTTCCCTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcC-----ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC--------CCCCcCCC
Confidence 579999999999999999999985567 88999999999999 99999999999999999 88999999
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145 110 GETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC 189 (578)
Q Consensus 110 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~ 189 (578)
|.||||+|+.+|+.+++++| +++|++++
T Consensus 68 g~t~L~~A~~~~~~~~v~~L----------------------------------------------------l~~g~~~~ 95 (156)
T 1bd8_A 68 GTSPVHDAARTGFLDTLKVL----------------------------------------------------VEHGADVN 95 (156)
T ss_dssp SCCHHHHHHHTTCHHHHHHH----------------------------------------------------HHTTCCSC
T ss_pred CCCHHHHHHHcCcHHHHHHH----------------------------------------------------HHcCCCCC
Confidence 99999999998886555555 44454433
Q ss_pred ccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHH
Q 048145 190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF 269 (578)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~ 269 (578)
.. |..|+| |||+
T Consensus 96 ~~-------------------------------------------------------------~~~g~t-------~L~~ 107 (156)
T 1bd8_A 96 VP-------------------------------------------------------------DGTGAL-------PIHL 107 (156)
T ss_dssp CC-------------------------------------------------------------CTTSCC-------HHHH
T ss_pred Cc-------------------------------------------------------------CCCCCc-------HHHH
Confidence 22 235566 9999
Q ss_pred HHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 270 Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|+..|+.+++++|++ . ++++..|.+|+||||+|+++|+.+++++|+
T Consensus 108 A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 108 AVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred HHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999998 4 889999999999999999999999999998
No 68
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3.5e-27 Score=226.38 Aligned_cols=179 Identities=9% Similarity=0.016 Sum_probs=122.8
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145 28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN 107 (578)
Q Consensus 28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n 107 (578)
..|.||||.|++.|+.+.++.|+++ |++ ++. +..|.||||+|+..|+.++++.|++.|+ +++.+|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~-----~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~d 67 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAH-GMR-----VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD--------DPSLPN 67 (239)
T ss_dssp -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS--------SCCCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhcc-CCC-----ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCC--------CCCCcC
Confidence 4699999999999999999999999 888 765 4789999999999999999999999999 899999
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145 108 KLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID 187 (578)
Q Consensus 108 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~ 187 (578)
..|.||||+|+.+|+.+++++|+ ++|++
T Consensus 68 ~~g~t~L~~A~~~g~~~~v~~Ll----------------------------------------------------~~ga~ 95 (239)
T 1ycs_B 68 DEGITALHNAVCAGHTEIVKFLV----------------------------------------------------QFGVN 95 (239)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHH----------------------------------------------------HHTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------HcCCC
Confidence 99999999999998866655554 44444
Q ss_pred ccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHH
Q 048145 188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRIL 267 (578)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pL 267 (578)
++.. |..|+| ||
T Consensus 96 ~~~~-------------------------------------------------------------d~~g~t-------pL 107 (239)
T 1ycs_B 96 VNAA-------------------------------------------------------------DSDGWT-------PL 107 (239)
T ss_dssp TTCC-------------------------------------------------------------CTTCCC-------HH
T ss_pred CCcc-------------------------------------------------------------CCCCCC-------HH
Confidence 4322 335666 99
Q ss_pred HHHHhcCHHHHHHHHHHHCCCcccccccCCC-hHHHHH--HHhCcHHHHHHHHHhhchhhhhhhhcc---------cCCC
Q 048145 268 LFAVSNGIIEILEEIRHKYPQTLDNVNEKGQ-NILHVA--IMYRQLEIFEIIKEKMQLSLAEWALKI---------DNEG 335 (578)
Q Consensus 268 h~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~-t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~---------d~~G 335 (578)
|+|+..|+.+++++|++ .+++++..|..|. ||||+| +..|+.+++++|+ ..+++++.. |..|
T Consensus 108 ~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll-----~~~a~~~~~~~~~~~al~d~~~ 181 (239)
T 1ycs_B 108 HCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-----GVQEKMGIMNKGVIYALWDYEP 181 (239)
T ss_dssp HHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH-----HHHHHTTTTGGGEEEESSCBCC
T ss_pred HHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH-----HhhhcccccccceEEEEeccCC
Confidence 99999999999999998 8999999998887 999999 8899999999999 455556654 7778
Q ss_pred CchhhHHHhccc
Q 048145 336 YTILHQVADMKY 347 (578)
Q Consensus 336 ~T~LhlA~~~~~ 347 (578)
.|+++++.+.|.
T Consensus 182 ~~~~eLa~~~G~ 193 (239)
T 1ycs_B 182 QNDDELPMKEGD 193 (239)
T ss_dssp SSTTBCCBCSSC
T ss_pred CCCCcccccCCC
Confidence 999999988875
No 69
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=9e-26 Score=204.77 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=112.6
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.++++ .....+..|..|.||||+|+..|+.++|++|++. +++ ++.+|..|+||||+|+..|
T Consensus 9 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 9 LAAQGELDQLKEHLRK--GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GAD-----PHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHTTCHHHHHHHHTT--CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHc--CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----chhhcccCCCHHHHHHHCC
Confidence 5789999999999988 4555788899999999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM 146 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~ 146 (578)
+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++. ..+..|.||||+|+
T Consensus 81 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 143 (172)
T 3v30_A 81 YTDIVGLLLERDV--------DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143 (172)
T ss_dssp CHHHHHHHHTTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 9999999999999 8999999999999999999987777777664 23334444444444
No 70
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=1.6e-25 Score=202.15 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=128.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHH
Q 048145 68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY 147 (578)
Q Consensus 68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~ 147 (578)
.|.||||.|++.|+.++++.|++.++ +++.+|..|.||||+|+..|+.+++++|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----------------- 56 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQEN--------VINHTDEEGFTPLMWAAAHGQIAVVEFLL----------------- 56 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSS--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHH-----------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCC--------CcCCCCCCCCCHHHHHHHCCCHHHHHHHH-----------------
Confidence 58999999999999999999999998 89999999999999999998866655554
Q ss_pred HHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145 148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM 227 (578)
Q Consensus 148 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 227 (578)
++|++++..
T Consensus 57 -----------------------------------~~g~~~~~~------------------------------------ 65 (167)
T 3v31_A 57 -----------------------------------QNGADPQLL------------------------------------ 65 (167)
T ss_dssp -----------------------------------HTTCCTTCC------------------------------------
T ss_pred -----------------------------------HcCCCCCCc------------------------------------
Confidence 444443222
Q ss_pred HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145 228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY 307 (578)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~ 307 (578)
+..|.| |||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..
T Consensus 66 -------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~ 112 (167)
T 3v31_A 66 -------------------------GKGRES-------ALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHG 112 (167)
T ss_dssp -------------------------CTTCCC-------HHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHT
T ss_pred -------------------------CCCCCc-------HHHHHHHcCCHHHHHHHHH-CCCCCCcCCCCCCCHHHHHHHc
Confidence 224555 9999999999999999998 7899999999999999999999
Q ss_pred CcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 308 RQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 308 g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
|+.+++++|+ +.|++++.+|.+|+||||+|+..++.
T Consensus 113 ~~~~~v~~Ll-----~~g~~~~~~~~~g~t~l~~A~~~~~~ 148 (167)
T 3v31_A 113 NHVKCVKMLL-----ESGADPTIETDSGYNSMDLAVALGYR 148 (167)
T ss_dssp TCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred CCHHHHHHHH-----HcCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 9999999999 56778999999999999999999865
No 71
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=6.7e-28 Score=245.31 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=93.9
Q ss_pred cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCC--
Q 048145 25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNP-- 102 (578)
Q Consensus 25 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~-- 102 (578)
..+.+++||||+||+.|+.++|++|++. +.. ....+..|..|.||||+||+.|+.++|++|+++|+ +
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~--~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ga--------d~~ 155 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLL-LTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP--------TEI 155 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC---C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT--------TTH
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHc-CCc--HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCC--------Ccc
Confidence 3455677999999999999999999988 542 00022345567889999999999999999999987 3
Q ss_pred -cccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----c--cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145 103 -LVVENKLGETPLYRAASVGKIEALRYFAEQ-----V--NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA 174 (578)
Q Consensus 103 -~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~--~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 174 (578)
.+..+.+ .||||+|+.+|+.++|++|+++ . .|..|.||||+|+. ..|+
T Consensus 156 ~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~-------~~G~---------------- 211 (376)
T 2aja_A 156 MAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV-------GRGH---------------- 211 (376)
T ss_dssp HHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS-------TTCC----------------
T ss_pred ccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH-------HCCC----------------
Confidence 2333333 8999999999999999999987 2 56678899999871 2466
Q ss_pred HHHHHHHHhccc
Q 048145 175 VALVKMLVEKRI 186 (578)
Q Consensus 175 ~~~v~~Ll~~g~ 186 (578)
.+++++|+++|+
T Consensus 212 ~eiv~~Ll~~ga 223 (376)
T 2aja_A 212 HNVINFLLDCPV 223 (376)
T ss_dssp HHHHHHHTTSHH
T ss_pred HHHHHHHHhCCC
Confidence 889999987653
No 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=3.6e-28 Score=247.26 Aligned_cols=253 Identities=9% Similarity=0.030 Sum_probs=169.8
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.+++...+.......+..|.||||+||..|+.++|++|+++ +++.....++.+| .||||+||..|
T Consensus 99 Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~---~TpLh~Aa~~G 174 (376)
T 2aja_A 99 AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN---YHAFRLAAENG 174 (376)
T ss_dssp HHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH---HHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC---CCHHHHHHHCC
Confidence 6788999977777766111112234566789999999999999999999999 6430000033333 99999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCccc--CCCCCCCHHHHHH-HcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccC
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVV--ENKLGETPLYRAA-SVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQG 157 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~--~n~~g~TpLh~A~-~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G 157 (578)
+.++|++|+++|+ +++. .|..|.||||+|+ .+|+.++|++|++. ...|.||||+|+ ..|
T Consensus 175 ~~eiv~~Ll~~ga--------~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~--ga~~~taL~~Aa--------~~g 236 (376)
T 2aja_A 175 HLHVLNRLCELAP--------TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--PVMLAYAEIHEF--------EYG 236 (376)
T ss_dssp CHHHHHHHHHSCG--------GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS--HHHHHHHHHCTT--------TTT
T ss_pred CHHHHHHHHHcCC--------ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC--CCccchHHHHHH--------HCC
Confidence 9999999999999 7776 8889999999999 99999999999985 234899999999 888
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccc
Q 048145 158 CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNK 237 (578)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (578)
+ .+++++|+++|++++..+ ++++.|+..+..+.... +....
T Consensus 237 ~----------------~evv~lL~~~ga~~~~~~-------~~l~~A~~~g~~~vv~~-----~~~~~----------- 277 (376)
T 2aja_A 237 E----------------KYVNPFIARHVNRLKEMH-------DAFKLSNPDGVFDLVTK-----SECLQ----------- 277 (376)
T ss_dssp T----------------TTHHHHHHHHHHHHHHHH-------TTTTTTSSSSCCCCSSH-----HHHHH-----------
T ss_pred C----------------HHHHHHHHhcCccccccc-------HHHHHHHHCCChhhhcH-----Hhhhh-----------
Confidence 8 899999999998775442 24455554444332110 00000
Q ss_pred cccccCcccccccccccccccccccchh---HHHHHHhcCHHHHHHHHHHHCCC-----cccccccCCChHHHHHHHhCc
Q 048145 238 AHVDQYPQAVDQENDTTKDMTSSMRTMR---ILLFAVSNGIIEILEEIRHKYPQ-----TLDNVNEKGQNILHVAIMYRQ 309 (578)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~g~t~~~~g~~---pLh~Aa~~G~~~iv~~Ll~~~~~-----~i~~~d~~G~t~Lh~A~~~g~ 309 (578)
+.. .|..+...+..+.+++|++ .+. ......+.+.||||+|++.|+
T Consensus 278 -------------------------~~~~~~~li~~~~~~~~~~~~~Ll~-~~~vk~l~~~g~~~n~~~~~L~~A~~~g~ 331 (376)
T 2aja_A 278 -------------------------GFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTATIPGDANELLRLALRLGN 331 (376)
T ss_dssp -------------------------HHHHHHHHHHHCCGGGHHHHHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTC
T ss_pred -------------------------hHHHHHHHHHcchhhHHHHHHHHHh-ChhhhhhhccCCCCCCccHHHHHHHHcCc
Confidence 000 1122223355788888886 332 112233467899999999999
Q ss_pred HHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 310 LEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 310 ~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
.+++++|+ + . ...+|..|+|++.+|...|+.
T Consensus 332 ~e~v~lLl-~----~---~~v~~~~~~~~~~~~~~~~~~ 362 (376)
T 2aja_A 332 QGACALLL-S----I---PSVLALTKANNYYINETGGRL 362 (376)
T ss_dssp TTHHHHHT-T----S---HHHHHSCC-------------
T ss_pred HHHHHHHH-c----C---hHHHHHHHHhccccccccccc
Confidence 99999999 3 2 256788899999999988865
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=4.9e-25 Score=195.83 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=123.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHH
Q 048145 69 GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYI 148 (578)
Q Consensus 69 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~ 148 (578)
+.||||.|++.|+.+++++|++.|+ +++ .+..|.||||+|+.+|+.+++++|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~--------~~~-~~~~g~t~L~~A~~~~~~~~v~~L------------------- 53 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGA--------PFT-TDWLGTSPLHLAAQYGHFSTTEVL------------------- 53 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTC--------CCC-CCTTCCCHHHHHHHHTCHHHHHHH-------------------
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCC--------CCC-cCCCCCCHHHHHHHcCCHHHHHHH-------------------
Confidence 4689999999999999999999998 554 578899999999998876555555
Q ss_pred HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145 149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI 228 (578)
Q Consensus 149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (578)
+++|++++..
T Consensus 54 ---------------------------------l~~g~~~~~~------------------------------------- 63 (153)
T 1awc_B 54 ---------------------------------LRAGVSRDAR------------------------------------- 63 (153)
T ss_dssp ---------------------------------HTTTCCTTCC-------------------------------------
T ss_pred ---------------------------------HHcCCCCCCC-------------------------------------
Confidence 4444443222
Q ss_pred HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145 229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR 308 (578)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g 308 (578)
|..|.| |||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+.+|
T Consensus 64 ------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~ 111 (153)
T 1awc_B 64 ------------------------TKVDRT-------PLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHN 111 (153)
T ss_dssp ------------------------CTTCCC-------HHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ------------------------CCCCCC-------HHHHHHHcChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcC
Confidence 235556 9999999999999999998 89999999999999999999999
Q ss_pred cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
+.+++++|+ +.|++++.+|..|+||||+|+..|+.
T Consensus 112 ~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~ 146 (153)
T 1awc_B 112 HQEVVELLI-----KYGADVHTQSKFCKTAFDISIDNGNE 146 (153)
T ss_dssp CHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHH-----HcCCCccccCCCCCCHHHHHHHcCCH
Confidence 999999999 56778999999999999999999875
No 74
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=2.5e-25 Score=199.63 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=132.0
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.++.+++. ....+..+..|.||||+|+. |+.+++++|++. +.+ ++.+|..|.||||+|++.|
T Consensus 12 A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 12 AAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GAN-----PDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp HHHHTCHHHHHHHTTS---CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC---CCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHHHcC
Confidence 5788999988888866 34457788999999999999 999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHh
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQV 154 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~ 154 (578)
+.+++++|+++|+ +++.+|..|.||||+|++.|+.+++++|++. ..+..|.||||+|+
T Consensus 82 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~-------- 145 (162)
T 1ihb_A 82 FLDTLQTLLEFQA--------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR-------- 145 (162)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH--------
T ss_pred CHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH--------
Confidence 9999999999999 8999999999999999999999999999997 45678999999999
Q ss_pred ccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145 155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID 187 (578)
Q Consensus 155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~ 187 (578)
..|+ .+++++|+++|++
T Consensus 146 ~~~~----------------~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGR----------------NEVVSLMQANGAG 162 (162)
T ss_dssp HTTC----------------HHHHHHHHHTC--
T ss_pred HcCC----------------HHHHHHHHHhCCC
Confidence 7788 8999999999875
No 75
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=1.5e-25 Score=205.63 Aligned_cols=169 Identities=14% Similarity=0.081 Sum_probs=140.5
Q ss_pred CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHHHcCCH----HHHHHHHhhcCCCCCCCCCCcc
Q 048145 30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALATINNV----DVAKTLVEFSKQSNDADKNPLV 104 (578)
Q Consensus 30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~g~~----~iv~~Ll~~g~~~~~~~~~~~~ 104 (578)
+.++||.||+.|+.+.++.+++. + ++.++ ..|+||||+|+..|+. +++++|+++|+ +++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~-~-------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga--------dvn 69 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK-G-------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA--------DIK 69 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH-S-------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC--------CSS
T ss_pred cccHHHHHHHcCCHHHHHHHHhc-C-------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC--------CCC
Confidence 46899999999999999999987 4 34555 7899999999999985 59999999999 999
Q ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145 105 VENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK 184 (578)
Q Consensus 105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~ 184 (578)
.+|..|+||||+|+..|+.++.+ ..+++++|+++
T Consensus 70 ~~d~~g~TpLh~a~~~~~~~~~~----------------------------------------------~~~iv~~Ll~~ 103 (186)
T 3t8k_A 70 SRTKEGTTLFFPLFQGGGNDITG----------------------------------------------TTELCKIFLEK 103 (186)
T ss_dssp CCCTTCCCTHHHHHHHCTTCHHH----------------------------------------------HHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHcCCcchhh----------------------------------------------HHHHHHHHHHC
Confidence 99999999999999988654321 06889999999
Q ss_pred cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccc-cccccc
Q 048145 185 RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDM-TSSMRT 263 (578)
Q Consensus 185 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-t~~~~g 263 (578)
|++++.. |..|+ |
T Consensus 104 Gadin~~-------------------------------------------------------------d~~g~tt----- 117 (186)
T 3t8k_A 104 GADITAL-------------------------------------------------------------YKPYKIV----- 117 (186)
T ss_dssp TCCSSSC-------------------------------------------------------------BGGGTBC-----
T ss_pred CCCCCcc-------------------------------------------------------------CCCcCch-----
Confidence 9987654 23556 5
Q ss_pred hhHHHHHHh-----cCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccC
Q 048145 264 MRILLFAVS-----NGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN 333 (578)
Q Consensus 264 ~~pLh~Aa~-----~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~ 333 (578)
|||+|+. .++.+++++|++..|++++.+|..|+||||+|++.|+.+++++|. +.....+.+|+
T Consensus 118 --pLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~-----~~~~~~~~~~~ 185 (186)
T 3t8k_A 118 --VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME-----DYIKKYNLKEN 185 (186)
T ss_dssp --TTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH-----HHHHHHTCCC-
T ss_pred --HHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-----HHHHHHhcccC
Confidence 9999998 445789999997689999999999999999999999999999998 33444565554
No 76
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=1.2e-24 Score=196.81 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=132.5
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
||..|+.+.++.+++. +...+..|..|.||||+|+..|+.+++++|+++ +.+ ++.+|..|.||||+|+..|
T Consensus 21 A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 21 AARAGRDDEVRILMAN---GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GAD-----VNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCccCCCCCCHHHHHHHcC
Confidence 6788999988777776 345577889999999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~ 155 (578)
+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|+++ ..|..|.||||+|+ .
T Consensus 92 ~~~~~~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--------~ 155 (169)
T 2y1l_E 92 HLEIVEVLLKNGA--------DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI--------D 155 (169)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------H
T ss_pred CHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--------H
Confidence 9999999999999 8999999999999999999999999999998 56789999999999 7
Q ss_pred cCchHHHHHHHhhhhhHHHHHHHHHHHhcc
Q 048145 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKR 185 (578)
Q Consensus 156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g 185 (578)
.|+ .+++++|++.|
T Consensus 156 ~~~----------------~~~~~~L~~~G 169 (169)
T 2y1l_E 156 NGN----------------EDLAEILQKLN 169 (169)
T ss_dssp TTC----------------HHHHHHHHTC-
T ss_pred hCC----------------HHHHHHHHHcC
Confidence 788 89999999875
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=6.3e-25 Score=200.62 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=139.4
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.++.+++. .+...+..+..|.||||+|+..|+.++|++|++. +++ ++.+|..|+||||+|+..|
T Consensus 12 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 12 QCREGNAVAVRLWLDN--TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GAR-----INVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp HHHHTCHHHHHHHHHC--TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhc--CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence 5788999988888887 4556788899999999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~ 155 (578)
+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++. ..|..|.||||+|+ .
T Consensus 84 ~~~~v~~Ll~~g~--------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~--------~ 147 (179)
T 3f6q_A 84 HRDIVQKLLQYKA--------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK--------A 147 (179)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC--------H
T ss_pred CHHHHHHHHHcCC--------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH--------H
Confidence 9999999999999 8999999999999999999999999999998 67899999999998 4
Q ss_pred cCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT 191 (578)
Q Consensus 156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~ 191 (578)
.++ .+++++|+++|++++..
T Consensus 148 ~~~----------------~~~~~~L~~~g~~~~~~ 167 (179)
T 3f6q_A 148 PLR----------------ELLRERAEKMGQNLNRI 167 (179)
T ss_dssp HHH----------------HHHHHHHHHTTCCCSCB
T ss_pred HHH----------------HHHHHHHHHhhcCcccC
Confidence 444 79999999999998766
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=9.3e-25 Score=196.62 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=131.7
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.++.+++. .+...+..+..|.||||+|+..|+.++|++|+++ +.+ ++.+|.+|+||||+|+..|
T Consensus 15 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 15 AAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GAD-----VHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHTCHHHHHHHCCT--TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHc--CCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCC-----CCccCCCCCCHHHHHHHcC
Confidence 5788999988888876 4556677788899999999999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI 155 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~ 155 (578)
+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|++. ..|.+|.||||+|. .
T Consensus 87 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~--------~ 150 (165)
T 3twr_A 87 HYEVAELLVKHGA--------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK--------D 150 (165)
T ss_dssp CHHHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC--------T
T ss_pred cHHHHHHHHhCCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh--------c
Confidence 9999999999999 8999999999999999999999999999998 57899999999986 3
Q ss_pred cCchHHHHHHHhhhhhHHHHHHHHHHHhccc
Q 048145 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRI 186 (578)
Q Consensus 156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~ 186 (578)
|+ .+++++|+++|+
T Consensus 151 -~~----------------~~i~~~L~~~gA 164 (165)
T 3twr_A 151 -GD----------------TDIQDLLRGDAA 164 (165)
T ss_dssp -TC----------------HHHHHHHHTC--
T ss_pred -CC----------------hHHHHHHhhccc
Confidence 66 799999998875
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=2.3e-24 Score=192.10 Aligned_cols=143 Identities=21% Similarity=0.277 Sum_probs=131.8
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.++.++++ .+...+..|..|.||||+ +..|+.+++++|++. +.+ ++.+|..|.||||+|+..|
T Consensus 9 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GAS-----PNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHTCHHHHHHHHHT--TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHh--hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence 5788999988888877 334557788999999999 999999999999999 999 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----ccccCCccHHHHHHHHHHHHHhcc
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----VNQTAAISILSSKMYIAIWRQVIQ 156 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~g~t~Lh~A~~~~~~~~~~~ 156 (578)
+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|++. ..|.+|.||||+|+ ..
T Consensus 80 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~--------~~ 143 (156)
T 1bd8_A 80 FLDTLKVLVEHGA--------DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL--------QR 143 (156)
T ss_dssp CHHHHHHHHHTTC--------CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHH--------HS
T ss_pred cHHHHHHHHHcCC--------CCCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHH--------Hc
Confidence 9999999999999 8999999999999999999999999999987 57789999999999 77
Q ss_pred CchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145 157 GCPAIKKIWEKKQIHKKAVALVKMLVEK 184 (578)
Q Consensus 157 G~~~~~~~~~~~~~~~~~~~~v~~Ll~~ 184 (578)
|+ .+++++|+++
T Consensus 144 ~~----------------~~~v~~Ll~~ 155 (156)
T 1bd8_A 144 GA----------------QDLVDILQGH 155 (156)
T ss_dssp CC----------------HHHHHHHHTT
T ss_pred Cc----------------HHHHHHHHhh
Confidence 88 8999999875
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.8e-25 Score=211.37 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=128.1
Q ss_pred HHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHH
Q 048145 46 IKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125 (578)
Q Consensus 46 v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~i 125 (578)
|+.|+++ +.+ ....+..+.+|.||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+..|+.++
T Consensus 1 v~~ll~~-~~~--~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~d~~g~tpLh~A~~~g~~~~ 69 (229)
T 2vge_A 1 MRSVLRK-AGS--PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN--------DPSQPNEEGITALHNAICGANYSI 69 (229)
T ss_dssp ----------C--CCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS--------CTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred Ceehhcc-CCC--CccccccccchhHHHHHHHHcCCHHHHHHHHhcCC--------CCCCCCCCCCCHHHHHHHcCCHHH
Confidence 4566776 555 11123445677889999999999999999999999 889999999999999999888655
Q ss_pred HHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcc
Q 048145 126 LRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLG 205 (578)
Q Consensus 126 v~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~ 205 (578)
+++| +++|++++..
T Consensus 70 v~~L----------------------------------------------------l~~ga~~n~~-------------- 83 (229)
T 2vge_A 70 VDFL----------------------------------------------------ITAGANVNSP-------------- 83 (229)
T ss_dssp HHHH----------------------------------------------------HHTTCCTTCC--------------
T ss_pred HHHH----------------------------------------------------HHCCCCCCCC--------------
Confidence 5555 4445544322
Q ss_pred cCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHH
Q 048145 206 LGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHK 285 (578)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~ 285 (578)
|..|+| |||+|+..|+.+++++|++
T Consensus 84 -----------------------------------------------d~~g~t-------pLh~A~~~g~~~~v~~Ll~- 108 (229)
T 2vge_A 84 -----------------------------------------------DSHGWT-------PLHCAASCNDTVICMALVQ- 108 (229)
T ss_dssp -----------------------------------------------CTTCCC-------HHHHHHHTTCHHHHHHHHT-
T ss_pred -----------------------------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-
Confidence 235566 9999999999999999998
Q ss_pred CCCcccccc-cCCChHHHHH--HHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145 286 YPQTLDNVN-EKGQNILHVA--IMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK 346 (578)
Q Consensus 286 ~~~~i~~~d-~~G~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~ 346 (578)
.+++++..| .+|+||||+| +..|+.+++++|+ +.|++++.+|..|.||+|.++...
T Consensus 109 ~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll-----~~ga~~~~~~~~~~~~l~~~~~~~ 167 (229)
T 2vge_A 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLA-----DVEQSMGLMNSGAVYALWDYSAEF 167 (229)
T ss_dssp TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHH-----HHHHHTTTSGGGEEEESSCBCCSS
T ss_pred cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHH-----HcCCCcccccCCchHHHHHHhhcc
Confidence 899999987 6999999999 9999999999999 678889999999999999766554
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=2.6e-24 Score=187.04 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=119.3
Q ss_pred hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCC
Q 048145 22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN 101 (578)
Q Consensus 22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~ 101 (578)
..+..+..|.||||+|+..|+.++|++|+++ +.+ ++.+|..|+||||+|+. |+.+++++|+++|+
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-------- 68 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEA-GAD-----PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA-------- 68 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC--------
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCC-----cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC--------
Confidence 3467789999999999999999999999999 899 99999999999999999 99999999999999
Q ss_pred CcccCCCC-CCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHH
Q 048145 102 PLVVENKL-GETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAV 175 (578)
Q Consensus 102 ~~~~~n~~-g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 175 (578)
+++.+|.. |.||||+|+..|+.+++++|++. ..|..|.||||+|+ ..|+ .
T Consensus 69 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~--------~~~~----------------~ 124 (136)
T 1d9s_A 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE--------EQGH----------------R 124 (136)
T ss_dssp CSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH--------HHTC----------------H
T ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH--------HcCC----------------H
Confidence 89999999 99999999999999999999998 56789999999999 6677 8
Q ss_pred HHHHHHHhcccc
Q 048145 176 ALVKMLVEKRID 187 (578)
Q Consensus 176 ~~v~~Ll~~g~~ 187 (578)
+++++|+++|++
T Consensus 125 ~~~~~Ll~~Gad 136 (136)
T 1d9s_A 125 DIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999875
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=2.2e-24 Score=192.33 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=104.2
Q ss_pred hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145 62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI 141 (578)
Q Consensus 62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~ 141 (578)
....+..|.||||+|++.|+.+++++|+++|+ +++.+|..|.||||+|+ .|+.++
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~-~~~~~~---------------- 59 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGA--------NPNAPNSYGRRPIQVMM-MGSARV---------------- 59 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTC--------CTTCCCSSSCCTTTSSC-TTCHHH----------------
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHH-cCCHHH----------------
Confidence 45667889999999999999999999999998 89999999999999985 666544
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145 142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG 221 (578)
Q Consensus 142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (578)
+++|+++|++++..
T Consensus 60 ------------------------------------v~~Ll~~g~~~~~~------------------------------ 73 (156)
T 1bi7_B 60 ------------------------------------AELLLLHGAEPNCA------------------------------ 73 (156)
T ss_dssp ------------------------------------HHHHHTTTCCCCCC------------------------------
T ss_pred ------------------------------------HHHHHHcCCCCCCc------------------------------
Confidence 45555555544322
Q ss_pred hHHHHHHHHhcCCccccccccCcccccccccccccccccccchh-HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145 222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMR-ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI 300 (578)
Q Consensus 222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~-pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~ 300 (578)
+..|.| |||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 74 --------------------------------------d~~g~ttpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tp 114 (156)
T 1bi7_B 74 --------------------------------------DPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLP 114 (156)
T ss_dssp --------------------------------------CTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCH
T ss_pred --------------------------------------CCCCCcHHHHHHHHCCCHHHHHHHHH-cCCCCcccCCCCCCH
Confidence 223445 9999999999999999998 688999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHH
Q 048145 301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVA 343 (578)
Q Consensus 301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~ 343 (578)
||+|+.+|+.+++++|+ +.|++++.+|..|+||.+-+.
T Consensus 115 l~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 115 VDLAEELGHRDVARYLR-----AAAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHHHTCHHHHHHHS-----SCC------------------
T ss_pred HHHHHHhCHHHHHHHHH-----HcCCCCCccCcCcCcccccCC
Confidence 99999999999999999 567789999999999988543
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=4.1e-24 Score=190.51 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=82.0
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL 103 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~ 103 (578)
...+..|.||||+|+..|+.++|++|+++ +.+ ++.+|..|+||||+|+ .|+.+++++|+++|+ ++
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~--------~~ 70 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEA-GAN-----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGA--------EP 70 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCC-----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC--------CC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC--------CC
Confidence 45678899999999999999999999999 999 9999999999999985 999999999999999 89
Q ss_pred ccCCCCCCC-HHHHHHHcCcHHHHHHHHH
Q 048145 104 VVENKLGET-PLYRAASVGKIEALRYFAE 131 (578)
Q Consensus 104 ~~~n~~g~T-pLh~A~~~g~~~iv~~Ll~ 131 (578)
+.+|..|.| |||+|+..|+.+++++|++
T Consensus 71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~ 99 (156)
T 1bi7_B 71 NCADPATLTRPVHDAAREGFLDTLVVLHR 99 (156)
T ss_dssp CCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCcCCCCCcHHHHHHHHCCCHHHHHHHHH
Confidence 999999999 9999999888666655554
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=2.4e-23 Score=180.99 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=109.4
Q ss_pred hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145 62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI 141 (578)
Q Consensus 62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~ 141 (578)
++.+|..|.||||+|++.|+.+++++|+++|+ +++.+|..|.||||+|+. |+.+++++|+
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll----------- 64 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGA--------DPNALNRFGRRPIQVMMM-GSAQVAELLL----------- 64 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTCCTTTTTSTT-SCHHHHHHHH-----------
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC--------CcCCcCCCCCCHHHHHHc-CCHHHHHHHH-----------
Confidence 88899999999999999999999999999998 889999999999999998 8866655554
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145 142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG 221 (578)
Q Consensus 142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (578)
++|++++..
T Consensus 65 -----------------------------------------~~g~~~~~~------------------------------ 73 (136)
T 1d9s_A 65 -----------------------------------------LHGAEPNCA------------------------------ 73 (136)
T ss_dssp -----------------------------------------HHTCCSSCC------------------------------
T ss_pred -----------------------------------------HCCCCCCCc------------------------------
Confidence 444443322
Q ss_pred hHHHHHHHHhcCCccccccccCcccccccccccc-cccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145 222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTK-DMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI 300 (578)
Q Consensus 222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~ 300 (578)
|.. |.| |||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 74 -------------------------------~~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tp 114 (136)
T 1d9s_A 74 -------------------------------DPATLTR-------PVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLP 114 (136)
T ss_dssp -------------------------------BTTTTBC-------HHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCH
T ss_pred -------------------------------CCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCH
Confidence 224 566 9999999999999999998 889999999999999
Q ss_pred HHHHHHhCcHHHHHHHH
Q 048145 301 LHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 301 Lh~A~~~g~~~iv~~Ll 317 (578)
||+|+++|+.+++++|+
T Consensus 115 l~~A~~~~~~~~~~~Ll 131 (136)
T 1d9s_A 115 VDLAEEQGHRDIARYLH 131 (136)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 99999999999999999
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=5.4e-23 Score=178.72 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=113.4
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL 103 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~ 103 (578)
......|.||||+|+..|+.++|++|++. +.+ ++.+|..|+||||+|+..|+.+++++|+++|+ ++
T Consensus 8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~ 73 (136)
T 2jab_A 8 HHHGSDLGKKLLEAARAGQDDEVRILMAN-GAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA--------DV 73 (136)
T ss_dssp ----CHHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CT
T ss_pred CcccccccHHHHHHHHhCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CC
Confidence 34456789999999999999999999999 999 99999999999999999999999999999999 89
Q ss_pred ccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHH
Q 048145 104 VVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALV 178 (578)
Q Consensus 104 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v 178 (578)
+.+|..|.||||+|+..|+.+++++|++. ..|.+|.||||+|+ ..|+ .+++
T Consensus 74 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~--------~~~~----------------~~~~ 129 (136)
T 2jab_A 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI--------GNGN----------------EDLA 129 (136)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHH
T ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH--------HCCC----------------HHHH
Confidence 99999999999999999999999999998 56789999999999 7787 8999
Q ss_pred HHHHhcc
Q 048145 179 KMLVEKR 185 (578)
Q Consensus 179 ~~Ll~~g 185 (578)
++|+++|
T Consensus 130 ~~Ll~~G 136 (136)
T 2jab_A 130 EILQKLN 136 (136)
T ss_dssp HHHHHC-
T ss_pred HHHHHcC
Confidence 9999875
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.2e-22 Score=173.50 Aligned_cols=121 Identities=28% Similarity=0.392 Sum_probs=114.7
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK 108 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~ 108 (578)
+|.||||.|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~~~~~ 66 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDK 66 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCC-----CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC--------CCcccCC
Confidence 589999999999999999999999 888 99999999999999999999999999999999 8999999
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145 109 LGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE 183 (578)
Q Consensus 109 ~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~ 183 (578)
.|.||||+|+..|+.+++++|++. ..+..|.||||+|+ ..|+ .+++++|++
T Consensus 67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~--------~~~~----------------~~~~~~Ll~ 122 (126)
T 1n0r_A 67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA--------RNGH----------------LEVVKLLLE 122 (126)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHH
T ss_pred CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHH--------HcCc----------------HHHHHHHHH
Confidence 999999999999999999999998 56789999999999 7777 899999999
Q ss_pred cccc
Q 048145 184 KRID 187 (578)
Q Consensus 184 ~g~~ 187 (578)
+|++
T Consensus 123 ~Gad 126 (126)
T 1n0r_A 123 AGAY 126 (126)
T ss_dssp HTCC
T ss_pred cCCC
Confidence 9875
No 87
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=5.5e-23 Score=196.99 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=121.9
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN 80 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g 80 (578)
|+..|+.+.+..+++. +..+ + .+..|.||||.|+..|+.++|+.|++. +++ ++.+|..|+||||+||..|
T Consensus 12 a~~~~~~~~~~~ll~~--g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 12 GKRTNLRKTGSERIAH--GMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYE-VDD-----PSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------CHHHHHHHHHHTCHHHHHHHTST-TSS-----CCCCCTTSCCHHHHHHHHT
T ss_pred hhhhhhHHHHHHHhcc--CCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence 5677888877777776 2222 2 357899999999999999999999999 889 9999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCc-cHHHHH--HHHHHHH
Q 048145 81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAI-SILSSK--MYIAIWR 152 (578)
Q Consensus 81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~-t~Lh~A--~~~~~~~ 152 (578)
+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|+++ ..+..|. ||||+| +
T Consensus 82 ~~~~v~~Ll~~ga--------~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~------ 147 (239)
T 1ycs_B 82 HTEIVKFLVQFGV--------NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM------ 147 (239)
T ss_dssp CHHHHHHHHHHTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSS------
T ss_pred CHHHHHHHHHcCC--------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHh------
Confidence 9999999999999 8999999999999999999999999999998 3455555 999999 5
Q ss_pred HhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccC------CCCCCchhhcccC
Q 048145 153 QVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEK------PTPGVTEISLGLG 207 (578)
Q Consensus 153 ~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~------~~~~~~~l~~~~~ 207 (578)
..|+ .+++++|+++|++++..+.+ +..+.++.+++..
T Consensus 148 --~~g~----------------~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~ 190 (239)
T 1ycs_B 148 --EEGY----------------TQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK 190 (239)
T ss_dssp --STTC----------------CCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred --hhcc----------------HHHHHHHHHhhhcccccccceEEEEeccCCCCCCccccc
Confidence 6777 89999999999988765332 2334455555443
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1.8e-23 Score=191.69 Aligned_cols=146 Identities=10% Similarity=0.056 Sum_probs=127.1
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCC-CCCCcHHHHHHhcCCh----HHHHHHHccCCCchhhhhhhccCCCCChHHHH
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRT-FNGECAIHVAAAMEDP----ELIKKFLGRLPVEKRLEALMQTDDNGNTAVHA 75 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~ 75 (578)
||..|+.+.++.++.. .. +..+ ..|+||||+|+..|+. +++++|+++ |++ ++.+|.+|+||||+
T Consensus 13 Aa~~g~~~~~~~l~~~-~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gad-----vn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK-GY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GAD-----IKSRTKEGTTLFFP 81 (186)
T ss_dssp HHHHSCHHHHHHHHHH-SS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCC-----SSCCCTTCCCTHHH
T ss_pred HHHcCCHHHHHHHHhc-Cc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCC-----CCCCCCCCCcHHHH
Confidence 5789999999999887 21 2333 6799999999999985 599999999 999 99999999999999
Q ss_pred HHHcCC------HHHHHHHHhhcCCCCCCCCCCcccCCCCCC-CHHHHHHHcC-----cHHHHHHHHH-h-----ccccC
Q 048145 76 LATINN------VDVAKTLVEFSKQSNDADKNPLVVENKLGE-TPLYRAASVG-----KIEALRYFAE-Q-----VNQTA 137 (578)
Q Consensus 76 Aa~~g~------~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~-TpLh~A~~~g-----~~~iv~~Ll~-~-----~~~~~ 137 (578)
|+..|+ .+++++|+++|+ +++.+|..|. ||||+|+..+ +.+++++|++ . ..|..
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Ga--------din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~ 153 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGA--------DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW 153 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC--------CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTT
T ss_pred HHHcCCcchhhHHHHHHHHHHCCC--------CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCC
Confidence 999987 689999999999 9999999999 9999999954 4579999999 5 68899
Q ss_pred CccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145 138 AISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC 189 (578)
Q Consensus 138 g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~ 189 (578)
|.||||+|+ ..|+ .+++++|.+...+.+
T Consensus 154 G~TpL~~A~--------~~~~----------------~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 154 GLTALEFVK--------RCQK----------------PIALKMMEDYIKKYN 181 (186)
T ss_dssp SCCHHHHHH--------TTTC----------------HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHH--------HcCC----------------HHHHHHHHHHHHHHh
Confidence 999999999 7788 788888887655443
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=9.6e-22 Score=170.76 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=105.0
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHH
Q 048145 65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSS 144 (578)
Q Consensus 65 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~ 144 (578)
....|.||||+||..|+.+++++|+++|+ +++.+|..|.||||+|+.+|+.+++++|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-------------- 67 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGA--------DVNAKDEYGLTPLYLATAHGHLEIVEVLL-------------- 67 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHH--------------
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHH--------------
Confidence 45678999999999999999999999999 88999999999999999988866555554
Q ss_pred HHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHH
Q 048145 145 KMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWV 224 (578)
Q Consensus 145 A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 224 (578)
++|++++..
T Consensus 68 --------------------------------------~~g~~~~~~--------------------------------- 76 (136)
T 2jab_A 68 --------------------------------------KNGADVNAV--------------------------------- 76 (136)
T ss_dssp --------------------------------------HTTCCTTCC---------------------------------
T ss_pred --------------------------------------HcCCCCCcC---------------------------------
Confidence 444443322
Q ss_pred HHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHH
Q 048145 225 ELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVA 304 (578)
Q Consensus 225 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A 304 (578)
|..|.| |||+|+..|+.+++++|++ .+++++..|.+|+||||+|
T Consensus 77 ----------------------------d~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A 120 (136)
T 2jab_A 77 ----------------------------DAIGFT-------PLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDIS 120 (136)
T ss_dssp ----------------------------CTTCCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred ----------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHH
Confidence 235556 9999999999999999998 7899999999999999999
Q ss_pred HHhCcHHHHHHHH
Q 048145 305 IMYRQLEIFEIIK 317 (578)
Q Consensus 305 ~~~g~~~iv~~Ll 317 (578)
+++|+.+++++|+
T Consensus 121 ~~~~~~~~~~~Ll 133 (136)
T 2jab_A 121 IGNGNEDLAEILQ 133 (136)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHH
Confidence 9999999999998
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1.4e-22 Score=176.19 Aligned_cols=108 Identities=16% Similarity=0.243 Sum_probs=103.8
Q ss_pred cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc
Q 048145 25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV 104 (578)
Q Consensus 25 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~ 104 (578)
..|.+|.||||+|+..|+.+++++|++. +.+ ++.+|..|+||||+|+..|+.+++++|+++|+ +++
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~ 70 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSD-----PNVKDHAGWTPLHEACNHGHLKVVELLLQHKA--------LVN 70 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------ccc
Confidence 5688999999999999999999999998 899 99999999999999999999999999999999 899
Q ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145 105 VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM 146 (578)
Q Consensus 105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~ 146 (578)
.+|..|.||||+|+..|+.+++++|++. ..|..|.||||+|+
T Consensus 71 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117 (137)
T ss_dssp CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 9999999999999999999999999998 67899999999998
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=4e-22 Score=182.65 Aligned_cols=105 Identities=22% Similarity=0.212 Sum_probs=99.4
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145 27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE 106 (578)
Q Consensus 27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~ 106 (578)
+.+|.||||+|+..|+.++++.|++ +.+ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--------~~~~~ 105 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--------DLDHR 105 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCcC
Confidence 5678999999999999999999998 778 99999999999999999999999999999999 88888
Q ss_pred C-CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145 107 N-KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM 146 (578)
Q Consensus 107 n-~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~ 146 (578)
+ ..|.||||+|+..|+.+++++|+++ ..|.+|.||||+|+
T Consensus 106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 151 (183)
T 3deo_A 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151 (183)
T ss_dssp CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence 8 8899999999999999999999998 57889999999998
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=3.3e-21 Score=164.53 Aligned_cols=121 Identities=27% Similarity=0.387 Sum_probs=103.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHH
Q 048145 68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY 147 (578)
Q Consensus 68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~ 147 (578)
+|+||||+|++.|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---------------- 56 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE---------------- 56 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCC--------CCCCcCCCCCcHHHHHHHcCcHHHHHHHHH----------------
Confidence 58999999999999999999999998 888999999999999999888666655544
Q ss_pred HHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145 148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM 227 (578)
Q Consensus 148 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 227 (578)
+|.+++..
T Consensus 57 ------------------------------------~g~~~~~~------------------------------------ 64 (126)
T 1n0r_A 57 ------------------------------------AGADVNAK------------------------------------ 64 (126)
T ss_dssp ------------------------------------TTCCTTCC------------------------------------
T ss_pred ------------------------------------cCCCCccc------------------------------------
Confidence 44433221
Q ss_pred HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145 228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY 307 (578)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~ 307 (578)
|..|.| |||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..
T Consensus 65 -------------------------~~~g~t-------~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~ 111 (126)
T 1n0r_A 65 -------------------------DKNGRT-------PLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 111 (126)
T ss_dssp -------------------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred -------------------------CCCCCc-------HHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHc
Confidence 234555 9999999999999999998 7889999999999999999999
Q ss_pred CcHHHHHHHH
Q 048145 308 RQLEIFEIIK 317 (578)
Q Consensus 308 g~~~iv~~Ll 317 (578)
|+.+++++|+
T Consensus 112 ~~~~~~~~Ll 121 (126)
T 1n0r_A 112 GHLEVVKLLL 121 (126)
T ss_dssp TCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9999999999
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=192.17 Aligned_cols=151 Identities=13% Similarity=0.001 Sum_probs=113.8
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHc---CcHHHHHHHHHhccccCCcc
Q 048145 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV---GKIEALRYFAEQVNQTAAIS 140 (578)
Q Consensus 64 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~g~t 140 (578)
.+...+.++||.|+..|+.+.++.|++.|++.+... .....+..|.||||+|+.. |+.+++++|++.
T Consensus 146 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~--~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-------- 215 (301)
T 2b0o_E 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPL--PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-------- 215 (301)
T ss_dssp CCCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCE--ECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--------
T ss_pred cccCchHHHHhhhhhccCHHHHHHHHhcCCcccccC--CCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--------
Confidence 345567899999999999999999999998754221 0012577899999999997 889988888763
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145 141 ILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA 220 (578)
Q Consensus 141 ~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (578)
|++++
T Consensus 216 --------------------------------------------gadvn------------------------------- 220 (301)
T 2b0o_E 216 --------------------------------------------GGHLD------------------------------- 220 (301)
T ss_dssp --------------------------------------------SSCTT-------------------------------
T ss_pred --------------------------------------------CCCCC-------------------------------
Confidence 22222
Q ss_pred hhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145 221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI 300 (578)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~ 300 (578)
..|..|+| |||+|+..|+.+++++|++ .|++++.+|.+|+||
T Consensus 221 ------------------------------~~d~~G~T-------pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~Tp 262 (301)
T 2b0o_E 221 ------------------------------AKAADGNT-------ALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETA 262 (301)
T ss_dssp ------------------------------CCCTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCH
T ss_pred ------------------------------CCCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence 12335666 9999999999999999998 899999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145 301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY 348 (578)
Q Consensus 301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~ 348 (578)
||+|+..|+.+++++|+ +.+++ .|+||||+|++.|+.
T Consensus 263 L~~A~~~~~~~iv~~Ll-----~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 263 LDIARKKHHKECEELLE-----QAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHTCHHHHHHHH-----HHHHH------TTSSCCC--------
T ss_pred HHHHHHcCCHHHHHHHH-----HhcCC------CCCChhHHHHhcCCc
Confidence 99999999999999999 34433 589999999998864
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.2e-21 Score=188.22 Aligned_cols=105 Identities=22% Similarity=0.212 Sum_probs=96.8
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145 27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE 106 (578)
Q Consensus 27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~ 106 (578)
+.+|.||||+|++.|+.++|+.|++ +.+ ++.+|..|+||||+||..|+.++|++|+++|+ +++.+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga--------~~~~~ 106 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--------DLDHR 106 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCC-----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC--------CTTCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCC-----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC--------CCCcC
Confidence 4578999999999999999999998 778 99999999999999999999999999999999 88888
Q ss_pred C-CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145 107 N-KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM 146 (578)
Q Consensus 107 n-~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~ 146 (578)
+ ..|.||||+|+.+|+.+++++|+++ ..|..|.||||+|+
T Consensus 107 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152 (244)
T ss_dssp CSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 7 7899999999999999999999988 56788999999988
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.5e-21 Score=166.35 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=99.6
Q ss_pred CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145 26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV 105 (578)
Q Consensus 26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~ 105 (578)
.+..|+||||.|+..|+.++++.|++. +.+ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~ 68 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAK-GED-----VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--------DINA 68 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHT-TCC-----TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC--------CTTC
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHc-CCC-----cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------CCCc
Confidence 456889999999999999999999998 888 99999999999999999999999999999999 8999
Q ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145 106 ENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM 146 (578)
Q Consensus 106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~ 146 (578)
+|..|.||||+|+..|+.+++++|++. ..|.+|.||||+|.
T Consensus 69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 999999999999999999999999998 67899999999997
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=9.3e-22 Score=171.05 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=100.7
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHH
Q 048145 64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILS 143 (578)
Q Consensus 64 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh 143 (578)
.+|.+|+||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+..|+.+++++|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll------------- 63 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGS--------DPNVKDHAGWTPLHEACNHGHLKVVELLL------------- 63 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--------CSCCCCTTSCCHHHHHHHTTCHHHHHHHH-------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCcCCCCCCCHHHHHHHcCCHHHHHHHH-------------
Confidence 678899999999999999999999999988 88888999999999999888766555554
Q ss_pred HHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhH
Q 048145 144 SKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEW 223 (578)
Q Consensus 144 ~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 223 (578)
++|++++..
T Consensus 64 ---------------------------------------~~g~~~~~~-------------------------------- 72 (137)
T 3c5r_A 64 ---------------------------------------QHKALVNTT-------------------------------- 72 (137)
T ss_dssp ---------------------------------------HTTCCTTCC--------------------------------
T ss_pred ---------------------------------------HcCCcccCc--------------------------------
Confidence 334433221
Q ss_pred HHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHH
Q 048145 224 VELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHV 303 (578)
Q Consensus 224 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~ 303 (578)
|..|.| |||+|+..|+.+++++|++ .|++++.+|.+|+||||+
T Consensus 73 -----------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~ 115 (137)
T 3c5r_A 73 -----------------------------GYQNDS-------PLHDAAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDY 115 (137)
T ss_dssp -----------------------------CGGGCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGG
T ss_pred -----------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Confidence 234555 9999999999999999997 788899999999999999
Q ss_pred HHHhCcHHHHHHHH
Q 048145 304 AIMYRQLEIFEIIK 317 (578)
Q Consensus 304 A~~~g~~~iv~~Ll 317 (578)
|+..+..+++++|.
T Consensus 116 A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 116 TDDESMKSLLLLPE 129 (137)
T ss_dssp CCCHHHHHHHSCC-
T ss_pred HhhccHHHHHhhcc
Confidence 98888888887765
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=1.3e-22 Score=194.96 Aligned_cols=162 Identities=14% Similarity=0.057 Sum_probs=135.5
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145 28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN 107 (578)
Q Consensus 28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n 107 (578)
..+.+++.+++..|+.+.+..+... +. ..+.+|+||||+||+.|+.++++.|++ |+ +++.+|
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~-~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--------~~~~~d 74 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYI-AA--------DVVSEYETPWWTAARKADEQALSQLLE-DR--------DVDAVD 74 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGS-CH--------HHHHHHHHHHHHHHTTTCHHHHHHTTT-TC--------CTTCBC
T ss_pred CCCccHHHHHHHcCCCccccccccc-cc--------ccccCCCCHHHHHHHcCCHHHHHHHHc-CC--------CCCCcC
Confidence 4577888888888887766554443 32 345679999999999999999999999 87 899999
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHHHh-----ccc-cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHH
Q 048145 108 KLGETPLYRAASVGKIEALRYFAEQ-----VNQ-TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKML 181 (578)
Q Consensus 108 ~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~L 181 (578)
..|.||||+|+.+|+.+++++|++. ..+ ..|.||||+|+ ..|+ .+++++|
T Consensus 75 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~--------~~g~----------------~~~v~~L 130 (244)
T 3ui2_A 75 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA--------GYVR----------------PEVVEAL 130 (244)
T ss_dssp TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH--------HTTC----------------HHHHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH--------HcCC----------------HHHHHHH
Confidence 9999999999999999999999998 344 77999999999 7788 8999999
Q ss_pred HhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccc
Q 048145 182 VEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSM 261 (578)
Q Consensus 182 l~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~ 261 (578)
+++|++++.. |..|.|
T Consensus 131 l~~ga~~~~~-------------------------------------------------------------d~~g~t--- 146 (244)
T 3ui2_A 131 VELGADIEVE-------------------------------------------------------------DERGLT--- 146 (244)
T ss_dssp HHTTCCTTCC-------------------------------------------------------------CTTCCC---
T ss_pred HHCCCCCCCC-------------------------------------------------------------CCCCCc---
Confidence 9998876543 235666
Q ss_pred cchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145 262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 262 ~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll 317 (578)
|||+|+..+ .+..+.||||+|+..|+.+++++|+
T Consensus 147 ----~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 147 ----ALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp ----HHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHHHH
Confidence 999998522 2367899999999999999999998
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=3.7e-22 Score=182.90 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=113.4
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccc-cCC
Q 048145 65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQ-TAA 138 (578)
Q Consensus 65 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-~~g 138 (578)
.|..|+||||+|++.|+.++++.|++ |. +++.+|..|.||||+|+.+|+.+++++|++. ..+ .+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g 110 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DR--------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TS--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC
Confidence 46689999999999999999999999 77 8999999999999999999999999999998 344 789
Q ss_pred ccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccccccc
Q 048145 139 ISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDV 218 (578)
Q Consensus 139 ~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (578)
.||||+|+ ..|+ .+++++|+++|++++..
T Consensus 111 ~tpL~~A~--------~~~~----------------~~~v~~Ll~~ga~~~~~--------------------------- 139 (183)
T 3deo_A 111 LTALHMAA--------GYVR----------------PEVVEALVELGADIEVE--------------------------- 139 (183)
T ss_dssp CCHHHHHH--------HTTC----------------HHHHHHHHHHTCCTTCC---------------------------
T ss_pred CCHHHHHH--------hcCc----------------HHHHHHHHHcCCCCcCC---------------------------
Confidence 99999999 7777 89999999988876543
Q ss_pred chhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCC
Q 048145 219 SAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQ 298 (578)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~ 298 (578)
|..|+| |||+|++.++. ..+.
T Consensus 140 ----------------------------------d~~g~t-------pl~~A~~~~~~------------------~~~~ 160 (183)
T 3deo_A 140 ----------------------------------DERGLT-------ALELAREILKT------------------TPKG 160 (183)
T ss_dssp ----------------------------------CTTSCC-------HHHHHHHHHHT------------------CCCC
T ss_pred ----------------------------------CCCCCC-------HHHHHHHhccC------------------cccc
Confidence 235556 99988865432 4567
Q ss_pred hHHHHHHHhCcHHHHHHHH
Q 048145 299 NILHVAIMYRQLEIFEIIK 317 (578)
Q Consensus 299 t~Lh~A~~~g~~~iv~~Ll 317 (578)
++|++|++.|+.+++++|.
T Consensus 161 ~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 161 NPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCHHHHHHHHH
Confidence 8999999999999998886
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=1.8e-21 Score=184.14 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=110.1
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhh-cCCCCCCCCCC
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEF-SKQSNDADKNP 102 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~~~~ 102 (578)
+..+..|.||||+||..|+.++|+.|++. +.+ ++.+|..|+||||+||..|+.+++++|++. |+ +
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~--------~ 132 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDN-RVG-----VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI--------E 132 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC--------C
T ss_pred cccccccccccccccccCcHHHHHHHHhC-CCC-----ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC--------C
Confidence 44566789999999999999999999998 899 999999999999999999999999999999 77 8
Q ss_pred cccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHH
Q 048145 103 LVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVAL 177 (578)
Q Consensus 103 ~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 177 (578)
++.+|..|.||||+|+..|+.+++++|++. ..|.+|.||||+|+ ..|+ .++
T Consensus 133 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~--------~~~~----------------~~~ 188 (222)
T 3ehr_A 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT--------NAAC----------------ASL 188 (222)
T ss_dssp CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC--------SHHH----------------HHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc--------chhH----------------HHH
Confidence 999999999999999999999999999998 67899999999999 5555 899
Q ss_pred HHHHHhcccccccc
Q 048145 178 VKMLVEKRIDDCAT 191 (578)
Q Consensus 178 v~~Ll~~g~~~~~~ 191 (578)
++.|++.|+.....
T Consensus 189 l~~l~~~~~~~~~~ 202 (222)
T 3ehr_A 189 LKKKQGTDAVRTLS 202 (222)
T ss_dssp HC------------
T ss_pred HHHHhccchhhhcc
Confidence 99999988876544
No 100
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=1.6e-20 Score=151.36 Aligned_cols=90 Identities=31% Similarity=0.451 Sum_probs=85.7
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK 108 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~ 108 (578)
+|+||||+|+..|+.+++++|++. +++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--------~~~~~d~ 66 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDK 66 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCccCC
Confidence 489999999999999999999998 999 99999999999999999999999999999999 8999999
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHh
Q 048145 109 LGETPLYRAASVGKIEALRYFAEQ 132 (578)
Q Consensus 109 ~g~TpLh~A~~~g~~~iv~~Ll~~ 132 (578)
.|.||||+|+..|+.+++++|++.
T Consensus 67 ~g~t~l~~A~~~~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 67 NGRTPLHLAARNGHLEVVKLLLEA 90 (93)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999999999999974
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=3.7e-21 Score=182.05 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=125.8
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHHccC-------CCch--hhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCC
Q 048145 24 GYRTFNGECAIHVAAAMEDPELIKKFLGRL-------PVEK--RLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQ 94 (578)
Q Consensus 24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~-------~~~~--~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~ 94 (578)
...+..+.++.+++.+.|+...+..+.+.. +..+ ....++.+|.+|.||||+||..|+.++++.|++.|+
T Consensus 19 al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~- 97 (222)
T 3ehr_A 19 ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV- 97 (222)
T ss_dssp ESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred EeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCC-
Confidence 345667788888888888875543332210 0000 123456677889999999999999999999999999
Q ss_pred CCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145 95 SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA 174 (578)
Q Consensus 95 ~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 174 (578)
+++.+|..|.||||+|+.+|+.+++++|+
T Consensus 98 -------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-------------------------------------------- 126 (222)
T 3ehr_A 98 -------GVNGLDKAGSTALYWACHGGHKDIVEMLF-------------------------------------------- 126 (222)
T ss_dssp -------CTTCCCTTSCCHHHHHHHTTCHHHHHHHT--------------------------------------------
T ss_pred -------CccccCCCCCCHHHHHHHcCCHHHHHHHH--------------------------------------------
Confidence 89999999999999999998866665554
Q ss_pred HHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccc
Q 048145 175 VALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT 253 (578)
Q Consensus 175 ~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 253 (578)
++ |++++. .|
T Consensus 127 --------~~~g~~~~~-------------------------------------------------------------~d 137 (222)
T 3ehr_A 127 --------TQPNIELNQ-------------------------------------------------------------QN 137 (222)
T ss_dssp --------TSTTCCCCC-------------------------------------------------------------CC
T ss_pred --------cCCCCCccc-------------------------------------------------------------cC
Confidence 33 333322 23
Q ss_pred cccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccC
Q 048145 254 TKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN 333 (578)
Q Consensus 254 ~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~ 333 (578)
..|+| |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..++.++++.|+ ..+++.+.+|.
T Consensus 138 ~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~-----~~~~~~~~~~~ 204 (222)
T 3ehr_A 138 KLGDT-------ALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQ-----GTDAVRTLSNA 204 (222)
T ss_dssp TTSCC-------HHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------------
T ss_pred CCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHh-----ccchhhhccch
Confidence 35566 9999999999999999998 68999999999999999999999999999998 34444555554
Q ss_pred CC
Q 048145 334 EG 335 (578)
Q Consensus 334 ~G 335 (578)
+|
T Consensus 205 ~~ 206 (222)
T 3ehr_A 205 ED 206 (222)
T ss_dssp --
T ss_pred hh
Confidence 43
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=187.22 Aligned_cols=129 Identities=21% Similarity=0.151 Sum_probs=113.1
Q ss_pred CcccCChHHHHHHHhcCCchhhhcc-----CCCCCCcHHHHHHhc---CChHHHHHHHccCCCchhhhhhhccCCCCChH
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGY-----RTFNGECAIHVAAAM---EDPELIKKFLGRLPVEKRLEALMQTDDNGNTA 72 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~-----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~Tp 72 (578)
|+..|+.+.+..++.. ...+... .+..|.||||+|+.. |+.++|++|+++ +++ ++.+|.+|+||
T Consensus 158 A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gad-----vn~~d~~G~Tp 229 (301)
T 2b0o_E 158 AICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGH-----LDAKAADGNTA 229 (301)
T ss_dssp HHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSC-----TTCCCTTCCCH
T ss_pred hhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCC-----CCCCCCCCCCH
Confidence 5678999999999877 3333221 688999999999997 899999999999 999 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHH
Q 048145 73 VHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKM 146 (578)
Q Consensus 73 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~ 146 (578)
||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++...+ .|.||||+|+
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~ga--------d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-~g~tpLh~A~ 294 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRA--------LVGTVNEAGETALDIARKKHHKECEELLEQAQAG-TFAFPLHVDY 294 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC--------CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-TTSSCCC---
T ss_pred HHHHHHcCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-CCCChhHHHH
Confidence 999999999999999999999 8999999999999999999999999999997333 6899999999
No 103
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=2e-20 Score=159.34 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=87.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHH
Q 048145 66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSK 145 (578)
Q Consensus 66 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A 145 (578)
+..|.||||+|+..|+.++++.|++.|+ +++.+|..|.||||+|+..|+.+++++|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~L---------------- 59 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGE--------DVNRTLEGGRKPLHYAADCGQLEILEFL---------------- 59 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTC--------CTTSCCTTSSCHHHHHHHTTCHHHHHHH----------------
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCC--------CcCccCCCCCcHHHHHHHcCCHHHHHHH----------------
Confidence 4578899999999999999999999988 7888888899999999988875555544
Q ss_pred HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHH
Q 048145 146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVE 225 (578)
Q Consensus 146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 225 (578)
+++|++++..
T Consensus 60 ------------------------------------l~~g~~~~~~---------------------------------- 69 (123)
T 3aaa_C 60 ------------------------------------LLKGADINAP---------------------------------- 69 (123)
T ss_dssp ------------------------------------HTTTCCTTCC----------------------------------
T ss_pred ------------------------------------HHcCCCCCcC----------------------------------
Confidence 4444443222
Q ss_pred HHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHH
Q 048145 226 LMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAI 305 (578)
Q Consensus 226 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~ 305 (578)
|..|+| |||+|+..|+.+++++|++ .+++++.+|.+|+||||+|+
T Consensus 70 ---------------------------d~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 70 ---------------------------DKHHIT-------PLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp ---------------------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred ---------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence 235555 8888888888888888887 68888888888888888884
Q ss_pred HhCcH
Q 048145 306 MYRQL 310 (578)
Q Consensus 306 ~~g~~ 310 (578)
..+..
T Consensus 115 ~~~~~ 119 (123)
T 3aaa_C 115 NQAIK 119 (123)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 44333
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=5.3e-19 Score=172.92 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=105.7
Q ss_pred CcccCChHHHHHHHhcCCchhh-----hccCCCCCCcHHHHHHhc---CChHHHHHHHccCCCchhhhhhhccCCCCChH
Q 048145 1 MALKGDRQGFLRYFAQQTDEEL-----LGYRTFNGECAIHVAAAM---EDPELIKKFLGRLPVEKRLEALMQTDDNGNTA 72 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~-----~~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~Tp 72 (578)
|+..||.+.+..++.. .... ++..+..|.||||+|+.. |+.++|++|+++ +++ ++.+|.+|+||
T Consensus 137 a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~-----in~~d~~g~Tp 208 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGN-----LDKQTGKGSTA 208 (278)
T ss_dssp HHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSC-----TTCCCTTCCCH
T ss_pred HhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCC-----ccccCCCCCCH
Confidence 4678999988888887 2222 445588899999999999 899999999999 999 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145 73 VHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132 (578)
Q Consensus 73 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~ 132 (578)
||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++.
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~ga--------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKA--------SIEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCC--------CCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999999999999 8999999999999999999999999999987
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=5.7e-19 Score=178.78 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=104.4
Q ss_pred cCCCCChHHHHHHHc-CCHHHHHHHHhhcCCCCCCCCCCcccCC--CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145 65 TDDNGNTAVHALATI-NNVDVAKTLVEFSKQSNDADKNPLVVEN--KLGETPLYRAASVGKIEALRYFAEQVNQTAAISI 141 (578)
Q Consensus 65 ~d~~G~TpLh~Aa~~-g~~~iv~~Ll~~g~~~~~~~~~~~~~~n--~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~ 141 (578)
.+..+.||||.|+.. |+.++++.|+++|+ +++..+ ..|.||||+|+..|+.+++
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga--------dvn~~~~~~~g~TpLh~Aa~~g~~~iv--------------- 251 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGA--------DVNWVNGGQDNATPLIQATAANSLLAC--------------- 251 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTC--------CTTCCCTTTTCCCHHHHHHHTTCHHHH---------------
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCC--------CCCccccccCCCCHHHHHHHCCCHHHH---------------
Confidence 344567899999998 99999999999998 788777 7888999999888775544
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145 142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG 221 (578)
Q Consensus 142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (578)
++|+++|++++..
T Consensus 252 -------------------------------------~~LL~~Gadvn~~------------------------------ 264 (368)
T 3jue_A 252 -------------------------------------EFLLQNGANVNQA------------------------------ 264 (368)
T ss_dssp -------------------------------------HHHHHTTCCTTCC------------------------------
T ss_pred -------------------------------------HHHHHcCCCCCCC------------------------------
Confidence 4555555554322
Q ss_pred hHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHH
Q 048145 222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNIL 301 (578)
Q Consensus 222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~L 301 (578)
|..|+| |||+|+..|+.+++++||+ .+++++..|.+|+|||
T Consensus 265 -------------------------------d~~G~T-------pLh~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL 305 (368)
T 3jue_A 265 -------------------------------DSAGRG-------PLHHATILGHTGLACLFLK-RGADLGARDSEGRDPL 305 (368)
T ss_dssp -------------------------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred -------------------------------CCCCCC-------HHHHHHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHH
Confidence 335666 9999999999999999998 8999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145 302 HVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK 346 (578)
Q Consensus 302 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~ 346 (578)
|+|+..|+.+++++|+ ..+. ........+..+.|+++++....
T Consensus 306 ~~A~~~g~~~iv~lLl-~~~~-~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 306 TIAMETANADIVTLLR-LAKM-REAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHTTCHHHHHHHH-HHHC------------------------
T ss_pred HHHHHCCCHHHHHHHH-HcCC-CcccccccCCCCCCHHHHHHHHH
Confidence 9999999999999998 4442 34455567788999999987665
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=4.6e-19 Score=173.36 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=60.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhc
Q 048145 266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADM 345 (578)
Q Consensus 266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~ 345 (578)
|||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|+.+++++|+ +.+ + +.+++|.++.+
T Consensus 208 pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~g----a--------~~~~~~~~v~~ 273 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLT-QAL----S--------GRFNSHVHVEY 273 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHH----T--------TCCCSSCCCCC
T ss_pred HHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHH-HcC----C--------CCCCcceeeec
Confidence 9999999999999999998 99999999999999999999999999999999 333 2 56788877765
Q ss_pred c
Q 048145 346 K 346 (578)
Q Consensus 346 ~ 346 (578)
.
T Consensus 274 ~ 274 (278)
T 1dcq_A 274 E 274 (278)
T ss_dssp C
T ss_pred c
Confidence 4
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=8.8e-19 Score=186.14 Aligned_cols=125 Identities=12% Similarity=0.066 Sum_probs=112.3
Q ss_pred CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc------CCCCChHHHHHHH---cCCHHHHHHHHhhcCCCCCCC
Q 048145 29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT------DDNGNTAVHALAT---INNVDVAKTLVEFSKQSNDAD 99 (578)
Q Consensus 29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~------d~~G~TpLh~Aa~---~g~~~iv~~Ll~~g~~~~~~~ 99 (578)
...+.||.|+..|+.+.|+.|++. |++ ++.+ |..|+||||+||+ .|+.+++++|+++|+
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~-g~~-----~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga------ 198 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFAN-GQD-----FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG------ 198 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHT-TCC-----SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC------
T ss_pred ccHHHHHHHHhccCHHHHHHHHhh-ccc-----ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCC------
Confidence 345789999999999999999999 888 8877 8899999999976 999999999999999
Q ss_pred CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145 100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA 174 (578)
Q Consensus 100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 174 (578)
+++.+|..|.||||+|+.+|+.+++++|+++ ..|.+|.||||+|+ ..|+
T Consensus 199 --~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~--------~~~~---------------- 252 (497)
T 3lvq_E 199 --HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR--------KKHH---------------- 252 (497)
T ss_dssp --CTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHH--------HTTC----------------
T ss_pred --CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--------HcCC----------------
Confidence 8999999999999999999999999999998 67899999999999 7788
Q ss_pred HHHHHHHHhcccccccc
Q 048145 175 VALVKMLVEKRIDDCAT 191 (578)
Q Consensus 175 ~~~v~~Ll~~g~~~~~~ 191 (578)
.+++++|+++|++++..
T Consensus 253 ~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 253 KECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHHHHHHHTCC-----
T ss_pred HHHHHHHHHhCCCCCCC
Confidence 89999999999987653
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=3.3e-19 Score=149.75 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=94.9
Q ss_pred cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc
Q 048145 25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV 104 (578)
Q Consensus 25 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~ 104 (578)
..|.+|.||||+|+..|+.+++++|++. +.+ ++.+|..|+||||+|+..|+.+++++|+++|+ +++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~-----~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~ 69 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA--------DVN 69 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCC-----SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC--------CTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC--------CCc
Confidence 4688999999999999999999999999 889 99999999999999999999999999999999 899
Q ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccH
Q 048145 105 VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISI 141 (578)
Q Consensus 105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~ 141 (578)
.+|..|.||||+|+..|+.+++++|+++ ..+..|.+|
T Consensus 70 ~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 9999999999999999999999999987 455666665
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.77 E-value=9.8e-19 Score=177.04 Aligned_cols=123 Identities=12% Similarity=0.167 Sum_probs=113.3
Q ss_pred CCCCcHHHHHHhc-CChHHHHHHHccCCCchhhhhhhccC--CCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc
Q 048145 28 FNGECAIHVAAAM-EDPELIKKFLGRLPVEKRLEALMQTD--DNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV 104 (578)
Q Consensus 28 ~~g~T~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~l~~~d--~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~ 104 (578)
..+.|+||.|+.. |+.++|+.|++. +++ ++.+| ..|.||||+|+..|+.+++++|+++|+ +++
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gad-----vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga--------dvn 262 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAH-GAD-----VNWVNGGQDNATPLIQATAANSLLACEFLLQNGA--------NVN 262 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHT-TCC-----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTT
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHc-CCC-----CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC--------CCC
Confidence 3467899999999 999999999998 999 99988 899999999999999999999999999 899
Q ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHH
Q 048145 105 VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVK 179 (578)
Q Consensus 105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~ 179 (578)
.+|..|.||||+|+..|+.+++++|+++ ..|.+|.||||+|+ ..|+ .++++
T Consensus 263 ~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~--------~~g~----------------~~iv~ 318 (368)
T 3jue_A 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM--------ETAN----------------ADIVT 318 (368)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHH
T ss_pred CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH--------HCCC----------------HHHHH
Confidence 9999999999999999999999999998 57889999999999 7787 89999
Q ss_pred HHHhccccc
Q 048145 180 MLVEKRIDD 188 (578)
Q Consensus 180 ~Ll~~g~~~ 188 (578)
+|++.+...
T Consensus 319 lLl~~~~~~ 327 (368)
T 3jue_A 319 LLRLAKMRE 327 (368)
T ss_dssp HHHHHHC--
T ss_pred HHHHcCCCc
Confidence 999877543
No 110
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=1.2e-18 Score=145.02 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=85.8
Q ss_pred hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145 20 EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD 99 (578)
Q Consensus 20 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~ 99 (578)
+......|.+|.||||+|+..|+.+++++|++. +++ ++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga------ 81 (110)
T 2zgd_A 14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA------ 81 (110)
T ss_dssp --------CCHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------
T ss_pred CCcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------
Confidence 445677889999999999999999999999998 999 99999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 048145 100 KNPLVVENKLGETPLYRAASVGKIEALRYF 129 (578)
Q Consensus 100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~L 129 (578)
+++.+|..|.||||+|+..|+.+++++|
T Consensus 82 --~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 82 --DVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp --CTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred --CccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 8999999999999999999999999987
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=1.3e-18 Score=184.93 Aligned_cols=128 Identities=23% Similarity=0.167 Sum_probs=106.5
Q ss_pred CcccCChHHHHHHHhcCCchhhhccC------CCCCCcHHHHHHh---cCChHHHHHHHccCCCchhhhhhhccCCCCCh
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYR------TFNGECAIHVAAA---MEDPELIKKFLGRLPVEKRLEALMQTDDNGNT 71 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~------~~~g~T~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~T 71 (578)
|+..|+.+.+..+++. + ...+.. +..|.||||+|+. .|+.++|++|+++ |++ ++.+|.+|+|
T Consensus 139 A~~~g~~~~v~~ll~~--g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~-----vn~~d~~g~T 209 (497)
T 3lvq_E 139 AICNRDLLSVLEAFAN--G-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGH-----LDAKAADGNT 209 (497)
T ss_dssp HHHHTCHHHHHHHHHT--T-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCC-----TTCCCSSSCC
T ss_pred HHhccCHHHHHHHHhh--c-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-CCC-----CCccCCCCCc
Confidence 5788999999999988 2 233333 7899999999966 9999999999999 999 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHH
Q 048145 72 AVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKM 146 (578)
Q Consensus 72 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~ 146 (578)
|||+||..|+.++|++|+++|+ +++.+|..|.||||+|+..|+.+++++|+++..+. ..+|+|.+.
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga--------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~~~~~h~~~ 275 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRA--------LVGTVNEAGETALDIARKKHHKECEELLEQAQAGT-FAFPLHVDY 275 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCC--------CCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC-CCCcceeec
Confidence 9999999999999999999999 89999999999999999999999999999973332 337888876
No 112
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.75 E-value=3.2e-18 Score=137.69 Aligned_cols=88 Identities=28% Similarity=0.385 Sum_probs=81.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHH
Q 048145 68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISIL 142 (578)
Q Consensus 68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~L 142 (578)
+|+||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+.+|+.+++++|++. ..|.+|.|||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l 72 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCC--------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence 58999999999999999999999999 8999999999999999999999999999998 5788999999
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145 143 SSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID 187 (578)
Q Consensus 143 h~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~ 187 (578)
|+|+ ..|+ .+++++|+++|++
T Consensus 73 ~~A~--------~~~~----------------~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 73 HLAA--------RNGH----------------LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHH--------HTTC----------------HHHHHHHHHTTCC
T ss_pred HHHH--------HcCC----------------HHHHHHHHHcCCC
Confidence 9999 7788 8999999999864
No 113
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.68 E-value=2.8e-17 Score=137.79 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=62.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchh
Q 048145 266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTIL 339 (578)
Q Consensus 266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~L 339 (578)
|||+|+..|+.+++++|++ .+++++..|.+|+||||+|+..|+.+++++|+ +.|+++|.+|..|.||-
T Consensus 45 ~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll-----~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 45 PLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-----AKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH-----TTSSSHHHHSCCCC---
T ss_pred HHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH-----HcCCCCCcCCccccccc
Confidence 9999999999999999998 79999999999999999999999999999999 67778999999999874
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.62 E-value=6.6e-16 Score=128.33 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=75.6
Q ss_pred cccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchh
Q 048145 260 SMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTIL 339 (578)
Q Consensus 260 ~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~L 339 (578)
+.+|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+ +.|++++.+|..|+|||
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll-----~~ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-----EAGADVXAQDKFGKTAF 94 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-----HcCCCccccccCCCcHH
Confidence 3445559999999999999999998 79999999999999999999999999999999 56778999999999999
Q ss_pred hHHHhcccc
Q 048145 340 HQVADMKYY 348 (578)
Q Consensus 340 hlA~~~~~~ 348 (578)
|+|+..++.
T Consensus 95 ~~A~~~~~~ 103 (110)
T 2zgd_A 95 DISIDNGNE 103 (110)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHcCCH
Confidence 999999864
No 115
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=26.97 E-value=3.4e+02 Score=25.92 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhccCCcchhhH-HHHHHHHHHHHHHHHHhH
Q 048145 508 SMITFSASILLIIRLEKKWTAT-LYAAAFFPVIVLALMQFP 547 (578)
Q Consensus 508 m~~af~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 547 (578)
.++.|...+.-.+|+.+...++ ++..+|+.+.+.+++.+.
T Consensus 255 t~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~ 295 (347)
T 3rhw_A 255 TMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFA 295 (347)
T ss_dssp HHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666778877655556 666666665555555443
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.19 E-value=1.4e+02 Score=25.73 Aligned_cols=109 Identities=17% Similarity=0.059 Sum_probs=56.8
Q ss_pred CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhh----------------hhc
Q 048145 1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEA----------------LMQ 64 (578)
Q Consensus 1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~----------------l~~ 64 (578)
|..-|+++...++.++...+ ....+.=..|...|+.++++....+.+.-+...+ +..
T Consensus 15 AL~lg~l~~A~e~a~~l~~~-------~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLNDS-------ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HHHTTCHHHHHHHHHHHCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34568888777777661111 1223334456677888888877766332110000 111
Q ss_pred cCCCCChHHHHHHHcCCHH-HHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145 65 TDDNGNTAVHALATINNVD-VAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132 (578)
Q Consensus 65 ~d~~G~TpLh~Aa~~g~~~-iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~ 132 (578)
...+-+.+.|.+-..|+++ +++.|++.|. -.-+...|-.+|..++.+.+++.
T Consensus 88 ~~g~~n~af~~~l~lGdv~~~i~lL~~~~r----------------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 88 TREDFGSMLLNTFYNNSTKERSSIFAEGGS----------------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HTTCHHHHHHHHHHHTCHHHHHHHHHHTTC----------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HCccHHHHHHHHHHcCCHHHHHHHHHHCCC----------------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 1223344555655566543 4455544443 11234556667777777777765
No 117
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=24.66 E-value=1e+02 Score=22.37 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=21.9
Q ss_pred HHHHHHhccCCcchhhH-HHHHHHHHHHHHHHHHhHH
Q 048145 513 SASILLIIRLEKKWTAT-LYAAAFFPVIVLALMQFPF 548 (578)
Q Consensus 513 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 548 (578)
.++.-.-+|..+...++ ++..+|+.+.+.+++.+..
T Consensus 19 ~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~ 55 (76)
T 1vry_A 19 SSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAA 55 (76)
T ss_dssp HHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444446655556666 7888887666666665544
Done!