Query 048146
Match_columns 401
No_of_seqs 129 out of 1318
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.4E-56 3E-61 419.6 27.8 371 21-397 42-449 (449)
2 PTZ00206 amino acid transporte 100.0 4.8E-56 1E-60 435.4 31.0 373 25-398 59-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.4E-52 5.2E-57 398.1 30.8 378 19-400 31-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 5.3E-52 1.1E-56 404.7 -0.3 367 24-394 1-408 (409)
5 PLN03074 auxin influx permease 100.0 3.8E-47 8.2E-52 370.8 28.4 367 23-400 43-454 (473)
6 KOG1305 Amino acid transporter 100.0 1.5E-43 3.2E-48 336.3 24.6 373 22-399 2-407 (411)
7 KOG4303 Vesicular inhibitory a 100.0 6.8E-40 1.5E-44 289.9 10.4 370 21-400 112-517 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.2E-33 2.6E-38 272.2 31.1 369 20-393 3-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 4.8E-28 1E-32 231.8 32.7 356 24-386 1-391 (394)
10 PRK10483 tryptophan permease; 100.0 1.7E-27 3.7E-32 225.8 33.1 361 21-389 6-402 (414)
11 PRK09664 tryptophan permease T 100.0 3.7E-27 7.9E-32 223.3 32.0 359 23-388 6-402 (415)
12 PRK15132 tyrosine transporter 100.0 1.7E-26 3.7E-31 220.1 31.3 356 27-389 4-391 (403)
13 TIGR00837 araaP aromatic amino 100.0 3.2E-26 7E-31 220.9 27.6 327 32-365 3-360 (381)
14 PRK13629 threonine/serine tran 99.9 1.7E-22 3.7E-27 191.6 29.6 360 25-391 18-440 (443)
15 TIGR00814 stp serine transport 99.9 2.1E-22 4.6E-27 192.6 25.6 349 27-383 4-396 (397)
16 PRK10655 potE putrescine trans 99.8 2.4E-15 5.1E-20 147.9 34.4 226 21-254 3-247 (438)
17 PRK10435 cadB lysine/cadaverin 99.7 2.3E-14 5E-19 140.6 34.1 228 21-256 2-247 (435)
18 PRK10644 arginine:agmatin anti 99.7 3E-14 6.6E-19 140.3 34.0 230 20-256 4-251 (445)
19 TIGR00905 2A0302 transporter, 99.7 6.6E-14 1.4E-18 138.9 33.0 231 21-256 4-258 (473)
20 TIGR00909 2A0306 amino acid tr 99.7 4.2E-14 9E-19 138.8 30.1 231 23-253 2-252 (429)
21 PRK10249 phenylalanine transpo 99.7 9E-14 2E-18 137.2 32.4 226 20-256 17-269 (458)
22 TIGR01773 GABAperm gamma-amino 99.7 5.6E-14 1.2E-18 138.7 30.7 229 17-256 5-261 (452)
23 PRK11387 S-methylmethionine tr 99.7 1E-13 2.2E-18 137.5 31.3 225 21-256 11-266 (471)
24 TIGR03810 arg_ornith_anti argi 99.7 1.5E-13 3.3E-18 136.1 32.0 228 24-256 1-254 (468)
25 TIGR00912 2A0309 spore germina 99.7 2.6E-14 5.7E-19 136.9 25.8 324 24-364 1-354 (359)
26 PRK15049 L-asparagine permease 99.7 1.2E-13 2.5E-18 137.6 30.9 227 21-256 25-280 (499)
27 PRK11021 putative transporter; 99.7 5.1E-13 1.1E-17 130.2 34.6 215 27-250 2-231 (410)
28 TIGR00930 2a30 K-Cl cotranspor 99.7 9.2E-14 2E-18 146.2 29.5 232 20-252 72-336 (953)
29 KOG1287 Amino acid transporter 99.6 4E-14 8.7E-19 135.0 23.1 339 18-365 6-387 (479)
30 PRK11049 D-alanine/D-serine/gl 99.6 3.2E-13 7E-18 133.8 30.0 223 19-252 15-267 (469)
31 TIGR00906 2A0303 cationic amin 99.6 3.4E-13 7.3E-18 135.7 29.7 233 20-254 24-289 (557)
32 PRK10746 putative transport pr 99.6 1.1E-12 2.5E-17 129.4 32.7 225 21-256 7-260 (461)
33 PRK10238 aromatic amino acid t 99.6 6.6E-13 1.4E-17 131.0 30.2 218 20-248 8-252 (456)
34 TIGR00908 2A0305 ethanolamine 99.6 1.3E-12 2.8E-17 128.7 31.9 220 20-250 3-245 (442)
35 PRK10580 proY putative proline 99.6 3.3E-12 7.1E-17 126.3 34.4 221 20-251 5-254 (457)
36 COG1113 AnsP Gamma-aminobutyra 99.6 2.4E-13 5.2E-18 127.8 24.1 330 20-364 9-389 (462)
37 PRK10836 lysine transporter; P 99.6 1.9E-12 4E-17 129.0 31.0 226 20-256 11-265 (489)
38 TIGR00911 2A0308 L-type amino 99.6 1.1E-12 2.4E-17 131.1 28.3 231 20-256 38-295 (501)
39 PRK11357 frlA putative fructos 99.6 1.5E-12 3.3E-17 128.3 28.7 224 20-252 4-251 (445)
40 TIGR00913 2A0310 amino acid pe 99.6 5E-12 1.1E-16 125.8 32.0 217 23-250 1-251 (478)
41 PF13520 AA_permease_2: Amino 99.6 7E-12 1.5E-16 123.0 31.6 225 26-258 1-248 (426)
42 PRK10197 gamma-aminobutyrate t 99.5 9.8E-12 2.1E-16 122.4 29.4 209 35-254 3-239 (446)
43 COG0531 PotE Amino acid transp 99.4 2.6E-10 5.7E-15 113.1 30.3 235 20-257 8-262 (466)
44 PF03845 Spore_permease: Spore 99.4 1.5E-10 3.2E-15 109.0 25.3 275 25-310 1-298 (320)
45 TIGR00907 2A0304 amino acid pe 99.4 1.6E-09 3.4E-14 108.1 32.8 235 20-256 8-277 (482)
46 COG0833 LysP Amino acid transp 99.4 3E-10 6.5E-15 109.4 25.7 220 21-249 41-287 (541)
47 TIGR03428 ureacarb_perm permea 99.4 7.7E-09 1.7E-13 102.8 35.0 237 20-256 9-273 (475)
48 KOG1286 Amino acid transporter 99.3 6.6E-11 1.4E-15 117.3 18.4 338 20-364 26-423 (554)
49 PRK15238 inner membrane transp 99.3 8.7E-09 1.9E-13 103.0 32.4 228 22-251 5-266 (496)
50 TIGR03813 put_Glu_GABA_T putat 99.3 1.7E-08 3.7E-13 100.4 32.3 226 25-256 2-254 (474)
51 TIGR00910 2A0307_GadC glutamat 99.2 4.2E-08 9E-13 98.1 31.0 220 22-249 2-247 (507)
52 KOG3832 Predicted amino acid t 98.9 1.9E-08 4E-13 84.3 12.1 201 25-226 11-302 (319)
53 PF00324 AA_permease: Amino ac 98.9 1.3E-08 2.9E-13 101.3 12.5 220 34-259 5-263 (478)
54 KOG1289 Amino acid transporter 98.8 4.5E-06 9.8E-11 80.8 26.7 234 21-258 45-314 (550)
55 COG3949 Uncharacterized membra 98.7 6.2E-06 1.3E-10 74.9 22.8 207 28-247 5-229 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.6 5.2E-05 1.1E-09 74.7 27.2 329 23-356 11-381 (442)
57 COG1457 CodB Purine-cytosine p 98.5 0.00013 2.8E-09 70.3 26.0 253 90-360 84-358 (442)
58 PRK11375 allantoin permease; P 98.5 0.00023 5.1E-09 70.7 27.7 291 58-355 62-394 (484)
59 TIGR02358 thia_cytX probable h 98.4 0.00052 1.1E-08 66.3 28.7 280 58-355 31-325 (386)
60 TIGR00796 livcs branched-chain 98.2 0.002 4.4E-08 61.5 26.6 299 33-361 2-347 (378)
61 COG0591 PutP Na+/proline sympo 98.2 0.01 2.3E-07 59.2 31.6 145 23-179 37-187 (493)
62 PRK11017 codB cytosine permeas 98.1 0.0078 1.7E-07 58.6 29.2 275 58-355 44-334 (404)
63 PF02133 Transp_cyt_pur: Perme 98.1 0.00044 9.5E-09 68.2 19.5 336 22-360 5-374 (440)
64 TIGR00835 agcS amino acid carr 98.0 0.011 2.4E-07 57.3 27.4 148 23-183 44-201 (425)
65 TIGR02119 panF sodium/pantothe 98.0 0.02 4.3E-07 57.0 32.4 151 22-184 38-194 (471)
66 TIGR00813 sss transporter, SSS 98.0 0.017 3.6E-07 56.4 29.2 149 23-183 2-152 (407)
67 PF00474 SSF: Sodium:solute sy 97.9 0.0063 1.4E-07 59.4 24.5 148 23-182 5-155 (406)
68 KOG2082 K+/Cl- cotransporter K 97.8 0.012 2.6E-07 59.3 24.3 167 22-190 111-289 (1075)
69 PF02554 CstA: Carbon starvati 97.8 0.0025 5.4E-08 59.5 17.5 193 20-228 46-241 (376)
70 PRK09442 panF sodium/panthothe 97.8 0.053 1.2E-06 54.2 33.2 150 23-184 40-195 (483)
71 COG1914 MntH Mn2+ and Fe2+ tra 97.7 0.054 1.2E-06 52.4 26.6 351 26-391 17-409 (416)
72 PRK12488 acetate permease; Pro 97.6 0.1 2.2E-06 53.0 33.4 148 23-183 66-216 (549)
73 COG1953 FUI1 Cytosine/uracil/t 97.4 0.16 3.5E-06 49.6 27.3 298 58-360 76-413 (497)
74 TIGR02711 symport_actP cation/ 97.3 0.24 5.2E-06 50.3 33.5 148 23-183 66-216 (549)
75 COG0733 Na+-dependent transpor 97.2 0.22 4.9E-06 48.0 26.0 227 21-252 4-270 (439)
76 PF00209 SNF: Sodium:neurotran 97.2 0.33 7.1E-06 49.0 26.4 171 158-330 190-402 (523)
77 PRK00701 manganese transport p 97.2 0.29 6.3E-06 48.1 29.0 48 85-132 92-139 (439)
78 KOG1288 Amino acid transporter 97.1 0.041 9E-07 55.1 17.2 204 45-250 88-348 (945)
79 PRK10484 putative transporter; 97.0 0.5 1.1E-05 47.8 31.6 157 22-183 36-197 (523)
80 PRK09395 actP acetate permease 96.9 0.57 1.2E-05 47.6 33.4 148 23-182 68-217 (551)
81 PRK15015 carbon starvation pro 96.9 0.011 2.4E-07 59.1 11.5 108 21-128 78-186 (701)
82 TIGR02121 Na_Pro_sym sodium/pr 96.9 0.58 1.2E-05 46.8 32.4 150 23-183 35-192 (487)
83 PRK15419 proline:sodium sympor 96.8 0.67 1.5E-05 46.5 32.5 150 23-183 39-196 (502)
84 TIGR03648 Na_symport_lg probab 96.4 1.3 2.9E-05 45.0 31.6 149 22-182 30-180 (552)
85 COG1966 CstA Carbon starvation 96.4 0.091 2E-06 51.6 13.6 107 22-128 48-155 (575)
86 PHA02764 hypothetical protein; 96.2 0.54 1.2E-05 43.2 16.4 93 23-116 11-106 (399)
87 PF01566 Nramp: Natural resist 96.2 1.3 2.8E-05 42.4 24.4 104 64-180 21-126 (358)
88 KOG2083 Na+/K+ symporter [Inor 96.0 0.032 6.9E-07 55.1 8.3 194 45-247 51-274 (643)
89 PF01235 Na_Ala_symp: Sodium:a 95.2 3.2 7E-05 40.3 26.1 150 18-180 11-171 (416)
90 PF05525 Branch_AA_trans: Bran 95.0 3.9 8.5E-05 39.9 24.6 303 26-361 3-353 (427)
91 COG1115 AlsT Na+/alanine sympo 94.7 4.6 0.0001 39.2 25.4 305 21-344 58-420 (452)
92 PF05525 Branch_AA_trans: Bran 94.2 0.4 8.7E-06 46.6 10.1 114 50-174 223-337 (427)
93 TIGR00796 livcs branched-chain 94.1 0.8 1.7E-05 44.0 11.9 50 85-134 253-302 (378)
94 PF02028 BCCT: BCCT family tra 93.3 9.5 0.00021 38.0 27.4 29 19-47 68-96 (485)
95 COG1114 BrnQ Branched-chain am 91.6 4.1 9E-05 39.1 12.5 115 49-174 224-339 (431)
96 PRK15433 branched-chain amino 88.7 4.7 0.0001 39.4 10.5 102 52-164 229-331 (439)
97 KOG2349 Na+:iodide/myo-inosito 84.6 21 0.00045 36.3 12.7 327 23-365 44-437 (585)
98 COG4147 DhlC Predicted symport 84.2 45 0.00098 32.9 28.6 304 42-359 60-437 (529)
99 KOG3660 Sodium-neurotransmitte 76.3 1E+02 0.0022 32.0 17.9 106 154-259 222-353 (629)
100 PRK15433 branched-chain amino 75.1 89 0.0019 30.8 25.3 309 27-361 9-356 (439)
101 TIGR01197 nramp NRAMP (natural 66.6 1.3E+02 0.0028 29.2 25.6 48 85-132 62-109 (390)
102 PRK09950 putative transporter; 56.2 2.3E+02 0.0049 28.6 28.9 110 23-132 81-216 (506)
103 PF12794 MscS_TM: Mechanosensi 52.8 1.9E+02 0.0042 27.4 11.0 37 228-264 45-81 (340)
104 PF03169 OPT: OPT oligopeptide 52.8 66 0.0014 33.4 8.5 59 39-99 366-427 (624)
105 COG0814 SdaC Amino acid permea 52.3 2.1E+02 0.0046 27.9 11.5 89 286-374 283-387 (415)
106 PRK09928 choline transport pro 50.8 3.2E+02 0.0069 28.7 26.6 28 19-46 86-113 (679)
107 PRK13183 psbN photosystem II r 48.4 19 0.0004 22.8 2.2 31 230-260 5-35 (46)
108 COG4145 PanF Na+/panthothenate 47.8 2.7E+02 0.0058 26.9 14.3 217 7-256 213-445 (473)
109 TIGR00909 2A0306 amino acid tr 44.2 3.1E+02 0.0067 26.6 12.7 48 87-134 264-311 (429)
110 PF02468 PsbN: Photosystem II 40.7 23 0.00051 22.1 1.8 29 232-260 4-32 (43)
111 CHL00020 psbN photosystem II p 40.0 21 0.00046 22.3 1.5 29 232-260 4-32 (43)
112 TIGR00905 2A0302 transporter, 39.1 4E+02 0.0086 26.4 11.8 46 89-134 270-315 (473)
113 TIGR03810 arg_ornith_anti argi 38.3 4.1E+02 0.0088 26.3 12.2 46 89-134 266-311 (468)
114 PF05915 DUF872: Eukaryotic pr 37.4 1.7E+02 0.0037 22.9 6.6 64 27-92 40-112 (115)
115 KOG4812 Golgi-associated prote 33.7 72 0.0016 28.2 4.3 75 317-393 159-244 (262)
116 KOG2466 Uridine permease/thiam 33.7 5E+02 0.011 26.0 16.1 239 20-267 50-331 (572)
117 PF05805 L6_membrane: L6 membr 32.6 95 0.0021 26.7 4.8 66 334-399 43-117 (195)
118 PRK11281 hypothetical protein; 32.0 4E+02 0.0087 29.9 10.6 30 228-257 541-570 (1113)
119 COG1292 BetT Choline-glycine b 29.5 6.1E+02 0.013 25.7 22.4 29 19-47 81-109 (537)
120 KOG1287 Amino acid transporter 29.2 4.3E+02 0.0092 26.4 9.3 43 89-132 275-317 (479)
121 KOG1305 Amino acid transporter 26.7 4E+02 0.0087 26.1 8.7 127 264-390 274-405 (411)
122 TIGR00842 bcct choline/carniti 26.7 6.4E+02 0.014 25.0 28.3 111 20-130 31-167 (453)
123 PHA02680 ORF090 IMV phosphoryl 25.9 1.5E+02 0.0033 21.7 4.1 52 217-269 31-83 (91)
124 cd08766 Cyt_b561_ACYB-1_like P 24.7 1.9E+02 0.0042 23.5 5.2 71 223-295 33-103 (144)
125 PF04835 Pox_A9: A9 protein co 24.3 2E+02 0.0042 19.0 4.0 34 226-260 19-52 (54)
126 PF01943 Polysacc_synt: Polysa 23.4 5E+02 0.011 22.6 16.1 16 210-225 54-69 (273)
127 PF04133 Vps55: Vacuolar prote 22.8 3.8E+02 0.0083 21.1 8.0 51 29-79 60-112 (120)
128 PF07954 DUF1689: Protein of u 22.1 2.1E+02 0.0046 23.6 4.9 58 340-398 34-92 (152)
129 PRK01766 multidrug efflux prot 21.1 7.8E+02 0.017 24.0 10.2 30 223-252 308-337 (456)
130 PLN02680 carbon-monoxide oxyge 20.3 2.4E+02 0.0051 25.1 5.2 73 221-295 70-142 (232)
131 KOG2174 Leptin receptor gene-r 20.3 2.5E+02 0.0055 22.2 4.7 39 28-66 65-105 (131)
132 COG0534 NorM Na+-driven multid 20.2 8.4E+02 0.018 24.0 11.3 31 223-253 310-340 (455)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-56 Score=419.55 Aligned_cols=371 Identities=24% Similarity=0.362 Sum_probs=332.7
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-----CCCCCChHHHHH
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA-----NPLIKTYPDIGD 94 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~-----~~~~~~y~~~~~ 94 (401)
+.++..|..++..|+.+.++|+|+|++|++|+++|++ |.+...++++++.||++.+++|.++ .....+|++.++
T Consensus 42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 3456799999999999999999999999999999998 9999999999999999999999765 123457777766
Q ss_pred H----------hcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcc
Q 048146 95 L----------AFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWL 164 (401)
Q Consensus 95 ~----------~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 164 (401)
. -+|+++|.+++++++++++|.|++|+++++++++++++..... ..+.+.++.+..+..+|+++.
T Consensus 122 ~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~-----~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 122 SAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG-----VLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred HHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC-----CccHHHHHHHHHHHHHHHHHH
Confidence 4 4578899999999999999999999999999999999833221 123578888899999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHhhhccccC------------Cchhhhhhhhhhccccccccchhhhccccchhh--
Q 048146 165 RSLGILAYVSAGGVLASITLVACVLWVGAVDGV------------GLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFS-- 230 (401)
Q Consensus 165 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~-- 230 (401)
||+|.++.+|.++.++.+..+..+.++...+.. +++..+|+.+|||+|+.++.|++++||+|++++
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~ 276 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGP 276 (449)
T ss_pred HhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCc
Confidence 999999999999999999988888777654422 278899999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC--
Q 048146 231 -KVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLR-- 307 (401)
Q Consensus 231 -~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~-- 307 (401)
+++..++.++.++|..+|++||++|||++++.+++|+|+ ++.....++++++.+..+||++++|..+.+|+.+.++
T Consensus 277 ~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~ 355 (449)
T KOG1304|consen 277 FGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFS 355 (449)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcC
Confidence 999999999999999999999999999999999999999 7777888999999999999999999999999976544
Q ss_pred --CCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccc--cchhHHHHHHHHHHHhh
Q 048146 308 --KSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTAR--RFGLELMLIVGILLIGA 383 (401)
Q Consensus 308 --~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~ 383 (401)
++++..+.+|.+++++++.+|..+||++.+++++|+++++.+.+++|++++++.+++++ ..+|+++.+..++++|+
T Consensus 356 ~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~ 435 (449)
T KOG1304|consen 356 ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGV 435 (449)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHH
Confidence 33456789999999999999999999999999999999999999999999999988874 45789999999999999
Q ss_pred HHhhHhhHHHHHHH
Q 048146 384 LAAVVGTYTSLKQI 397 (401)
Q Consensus 384 ~~~v~g~~~~i~~l 397 (401)
+.++.|||.++.++
T Consensus 436 ~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 436 FGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHhhhhhcC
Confidence 99999999999864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.8e-56 Score=435.43 Aligned_cols=373 Identities=19% Similarity=0.254 Sum_probs=315.8
Q ss_pred CchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhH
Q 048146 25 GTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRA 103 (401)
Q Consensus 25 ~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~ 103 (401)
.++..++.+|++|+++|+|+|++|++++++||+ |++++++++.++.|+.+++.+++++ ++.+||+|++++.+||++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 456689999999999999999999999999999 9999999999999999999999887 47889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc-cccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHH
Q 048146 104 MVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLK-IGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASI 182 (401)
Q Consensus 104 ~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 182 (401)
++++.+.+.++|.|++|+++.+|.++.+++.......... .+.+..+.++..++++|++++|++++++++|.+++.+++
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~ 217 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMV 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875432111001 112233445567789999999999999999999998887
Q ss_pred HHHHHHHhhhccc--------------c----------CCchhhhhhhhhhccccccccchhhhcccc--chhhHHHHHH
Q 048146 183 TLVACVLWVGAVD--------------G----------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR--RQFSKVLAAC 236 (401)
Q Consensus 183 ~~~~~~~~~~~~~--------------~----------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p--~~~~~~~~~~ 236 (401)
+.++.++++...+ + ...+.++++++|||.||.+++++++||||| +|+.++...+
T Consensus 218 ~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s 297 (467)
T PTZ00206 218 YLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIA 297 (467)
T ss_pred HHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHH
Confidence 7766655432211 0 014567999999999999999999999985 7899999999
Q ss_pred HHHHHHHHHHHHhHHHhhhcccchhhhHhcc-CCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCC---CCCc
Q 048146 237 FIISTANYGSMAILGYLMYGDHLKSQVTLNL-PIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRK---SRPI 312 (401)
Q Consensus 237 ~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~ 312 (401)
+.+++++|..+|++||+.|||++++++++|+ |.++....++++...+.++.+||++++|+|+.+++.+..++ ++++
T Consensus 298 ~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~ 377 (467)
T PTZ00206 298 MGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWK 377 (467)
T ss_pred HHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhh
Confidence 9999999999999999999999999999999 56666777888888899999999999999999999874432 2345
Q ss_pred hhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcc--cccchhHHHHHHHHHHHhhHHhhHhh
Q 048146 313 SILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKT--ARRFGLELMLIVGILLIGALAAVVGT 390 (401)
Q Consensus 313 ~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~--~~~~~~~~~~~~~~~~~g~~~~v~g~ 390 (401)
+...+....+.+.++|+++|+++.+++++||++++.++|++|+++|++.... ++..+++++.+++++++|++..+.||
T Consensus 378 ~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt 457 (467)
T PTZ00206 378 HCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGT 457 (467)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecc
Confidence 6566666777888999999999999999999999999999999999984221 11344566889999999999999999
Q ss_pred HHHHHHHH
Q 048146 391 YTSLKQIV 398 (401)
Q Consensus 391 ~~~i~~l~ 398 (401)
|+++++.+
T Consensus 458 ~~si~~~~ 465 (467)
T PTZ00206 458 GATIWGVT 465 (467)
T ss_pred hhHhhHHh
Confidence 99999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=398.06 Aligned_cols=378 Identities=35% Similarity=0.635 Sum_probs=339.9
Q ss_pred cccCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC-----hHHH
Q 048146 19 PQQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKT-----YPDI 92 (401)
Q Consensus 19 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~-----y~~~ 92 (401)
+..++++.|++++.++.++.++|.|+|+||++++++||. |+++++..++++.||..+|.+|.+.++...+ |+|+
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 345577899999999999999999999999999999999 8999999999999999999999998766555 9999
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHH
Q 048146 93 GDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAY 172 (401)
Q Consensus 93 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 172 (401)
++++||++.++++.+++.+..|+.|+.|.+..+|+++.+.+....+.. ..+ .+.+.+++.++.+|++++||++.+++
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~ 187 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSY 187 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHH
Confidence 999999988999999999999999999999999999999988765532 233 56889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCC---------------c-hhhhhhhhhhccccccccchhhhccccchhhHHHHHH
Q 048146 173 VSAGGVLASITLVACVLWVGAVDGVG---------------L-PTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAAC 236 (401)
Q Consensus 173 ~s~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 236 (401)
+|..+.+..+....+.++.+..++.+ . ++++|++.|+|+||..+|+++.+||+|++++|+...+
T Consensus 188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis 267 (437)
T KOG1303|consen 188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLIS 267 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHH
Confidence 99999998888777777666544311 2 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCC------CC
Q 048146 237 FIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRK------SR 310 (401)
Q Consensus 237 ~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~------~~ 310 (401)
+.+++.+|+..++.||++|||+++++++.|+++..+....+++++.++.+.++.....|+.+.+|+....++ ..
T Consensus 268 ~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~ 347 (437)
T KOG1303|consen 268 YIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSL 347 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccccc
Confidence 999999999999999999999999999999975556777888999999999999999999999999887653 33
Q ss_pred CchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccchhHHHHHHHH-HHHhhHHhhHh
Q 048146 311 PISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGI-LLIGALAAVVG 389 (401)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~v~g 389 (401)
.+|...|..+++.+.++|..+|.|+++++++|+.....+++++|+++|++.+|.+ +...++..++.. +++|+++++..
T Consensus 348 ~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~-~~s~~~~~~~~~~~~~~~~~~v~~ 426 (437)
T KOG1303|consen 348 VLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK-RFSPKWLLNWVIILVVGLLLSVLA 426 (437)
T ss_pred ceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHhhhhhhhhHHHHH
Confidence 4799999999999999999999999999999999999999999999999997776 455667777777 89999999999
Q ss_pred hHHHHHHHHHh
Q 048146 390 TYTSLKQIVTH 400 (401)
Q Consensus 390 ~~~~i~~l~~~ 400 (401)
...++++++.+
T Consensus 427 ~~~~~~~li~~ 437 (437)
T KOG1303|consen 427 AVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHhhC
Confidence 99999988753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=5.3e-52 Score=404.68 Aligned_cols=367 Identities=32% Similarity=0.547 Sum_probs=323.3
Q ss_pred CCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh---CCCCCChHHHHHHhccc
Q 048146 24 EGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA---NPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 24 ~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~---~~~~~~y~~~~~~~~G~ 99 (401)
|+.|.+++.++++|+++|+|+|++|++++++||+ |++++++++.++.++.+++.++.++ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999 9999999999999999999999885 35899999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
++++++++++.+.++|.+++|++..+|.++++++...++ ...++..+.++..++++|+++.|+++.+++.+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999999876543 1123456777888999999999999999999999998
Q ss_pred HHHHHHHHHHhhhc----cc-------c-------CCchhhhhhhhhhccccccccchhhhccccchhh---HHHHHHHH
Q 048146 180 ASITLVACVLWVGA----VD-------G-------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFS---KVLAACFI 238 (401)
Q Consensus 180 ~~~~~~~~~~~~~~----~~-------~-------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~---~~~~~~~~ 238 (401)
+.+..+...++... .+ . .+++.++++++|||.+|+++|++++|||+|+|++ ++...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 88864222222111 00 0 1277899999999999999999999999998877 99999999
Q ss_pred HHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC-----------
Q 048146 239 ISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLR----------- 307 (401)
Q Consensus 239 i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~----------- 307 (401)
+++++|..+|+.||++||+++++|++.|+|+++....+++++..++++.+||++.+|.++.+++.+..+
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 999999999999999999999999999999998777889999999999999999999999999987531
Q ss_pred -CCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccch-h---HHHHHHHHHHHh
Q 048146 308 -KSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFG-L---ELMLIVGILLIG 382 (401)
Q Consensus 308 -~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~-~---~~~~~~~~~~~g 382 (401)
+++++|...|.+++..++++|..+|+++++++++|++++..++|++|+++|+|.+++++.++ + +...++..+++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999988873221 1 125578999999
Q ss_pred hHHhhHhhHHHH
Q 048146 383 ALAAVVGTYTSL 394 (401)
Q Consensus 383 ~~~~v~g~~~~i 394 (401)
++.++.|+|+++
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.8e-47 Score=370.85 Aligned_cols=367 Identities=19% Similarity=0.206 Sum_probs=304.7
Q ss_pred CCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh----CCC-C-------CCh
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA----NPL-I-------KTY 89 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~----~~~-~-------~~y 89 (401)
.++++..++.++++++.+|.|+|+||++++++||+ |++.+++.+.++.|+++++.++..+ +++ . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 57889999999999999999999999999999999 9999999999999999999986433 211 1 257
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCch
Q 048146 90 PDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGI 169 (401)
Q Consensus 90 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 169 (401)
.|+++..+||+++.+.......++++.|+.|.+..++.+..+-... +.+.+.+++.++++|++++|+++.
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~----------~~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL----------DKRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc----------CCCeEEeehHHHHHHHHHccCHHH
Confidence 8889999999999999999999999999999999888776552111 234677788888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhc----cccC---------CchhhhhhhhhhccccccccchhhhccccchhhHHHHHH
Q 048146 170 LAYVSAGGVLASITLVACVLWVGA----VDGV---------GLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAAC 236 (401)
Q Consensus 170 l~~~s~~~~~~~~~~~~~~~~~~~----~~~~---------~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 236 (401)
++++|.+++.++++....++.... ..+. ..+.++++++|+|+||..+|++++|||||+|+++....+
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~ 272 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAA 272 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHH
Confidence 999999998876543332222111 1111 145567789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhhcccchh--hhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC--CCCCc
Q 048146 237 FIISTANYGSMAILGYLMYGDHLKS--QVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLR--KSRPI 312 (401)
Q Consensus 237 ~~i~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~ 312 (401)
....+..|+.+++.||++|||++.+ +.+.|+|++++ ..+++.+.+++.+.+||+++.|+.+..|+..+.+ ++...
T Consensus 273 ~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~ 351 (473)
T PLN03074 273 TLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICL 351 (473)
T ss_pred HHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHH
Confidence 9999999999999999999998764 45667887654 4678888999999999999999999999876543 34456
Q ss_pred hhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhccc--------------ccchhHHHHHHHH
Q 048146 313 SILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTA--------------RRFGLELMLIVGI 378 (401)
Q Consensus 313 ~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~--------------~~~~~~~~~~~~~ 378 (401)
|...|..+++.++++|..+|+|+.+++++||++++.+++++|+++|++.++++ ++++++.+.|+.+
T Consensus 352 r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i 431 (473)
T PLN03074 352 RALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFV 431 (473)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHH
Confidence 88999999999999999999999999999999999999999999999865542 1123456889999
Q ss_pred HHH-hhHHhhHhhHHHHHHHHHh
Q 048146 379 LLI-GALAAVVGTYTSLKQIVTH 400 (401)
Q Consensus 379 ~~~-g~~~~v~g~~~~i~~l~~~ 400 (401)
+++ |++..+.|+|.++.+++++
T Consensus 432 iv~~~~~g~~~G~~asi~~ii~~ 454 (473)
T PLN03074 432 VVWVLVVGFGFGGWASMTNFVRQ 454 (473)
T ss_pred HHhhhhHhhccchHHHHHHHHHh
Confidence 986 5554689999999999976
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=336.28 Aligned_cols=373 Identities=25% Similarity=0.395 Sum_probs=324.2
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK 100 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 100 (401)
.+++.|.+.+++++.|+++|+|++++|++|++.|.+ |++++.++++++.++.+++.++.++. ++++|+++++..+|+.
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GERTYSSLGDLIFGKL 80 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCCCHHHHHHHHcCCC
Confidence 356679999999999999999999999999999988 99999999999999999999999986 5569999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccc--ccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGL--KIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
++....+.......| |++|+++++|.+..+......+.+.. +.+++..+.+....+..|+++.|++..+++.|.++.
T Consensus 81 g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~ 159 (411)
T KOG1305|consen 81 GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSL 159 (411)
T ss_pred ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 977777777777777 79999999999996655443222211 123333367788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccc----------------CCchhhhhhhhhhccccccccchhhhcccc--chhhHHHHHHHHHH
Q 048146 179 LASITLVACVLWVGAVDG----------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR--RQFSKVLAACFIIS 240 (401)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p--~~~~~~~~~~~~i~ 240 (401)
.+..+.+..+++.....+ .+...++++++|+|.||++..++++||||| +|+.++...+...+
T Consensus 160 ~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~ 239 (411)
T KOG1305|consen 160 ASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILA 239 (411)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHH
Confidence 999998888887665421 136789999999999999999999999999 46999999999999
Q ss_pred HHHHHHHHhHHHhhhcccchhhhHhccCCcchh------hHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC------C
Q 048146 241 TANYGSMAILGYLMYGDHLKSQVTLNLPIRKIS------SKLAIYTTLINPLTKYAVIITPIATALEDTPHLR------K 308 (401)
Q Consensus 241 ~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~------~ 308 (401)
..+|...|.+||+.|||++.+|++.++|+.+.. ....+..+.++.+..+|+..+|+|..+++.+.++ .
T Consensus 240 ~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~ 319 (411)
T KOG1305|consen 240 TLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSF 319 (411)
T ss_pred HHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCc
Confidence 999999999999999999999999999876433 3577888889999999999999999998876544 2
Q ss_pred CCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccchhHHHHHHHHHHHhhHHhhH
Q 048146 309 SRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVV 388 (401)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ 388 (401)
++.++...+..++....+.|+++|+++.++.++||+++..++|++|+++|++..|+ +.+++...++..++|+...+.
T Consensus 320 s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~---~~~~~~~~~~~~~~~~~~~i~ 396 (411)
T KOG1305|consen 320 SGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK---KSREPLGALIFLILGVLLSII 396 (411)
T ss_pred cceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc---ccccchHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999998776 557778889999999999999
Q ss_pred hhHHHHHHHHH
Q 048146 389 GTYTSLKQIVT 399 (401)
Q Consensus 389 g~~~~i~~l~~ 399 (401)
|+...+.++..
T Consensus 397 ~~~~~i~~~~~ 407 (411)
T KOG1305|consen 397 GVAVMIYDLLA 407 (411)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-40 Score=289.94 Aligned_cols=370 Identities=25% Similarity=0.427 Sum_probs=324.0
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCC-------CCCChHHHH
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANP-------LIKTYPDIG 93 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~-------~~~~y~~~~ 93 (401)
+.+.+.+.+|+.-|+.|++=|.=+++||++....||.++..++.++.++.|++.+|++|..+.. .+++|.+++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA 191 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIA 191 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHH
Confidence 4457899999999999999999999999999999999999999999999999999999976632 367999999
Q ss_pred HHhcccc-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHH
Q 048146 94 DLAFGCK-GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAY 172 (401)
Q Consensus 94 ~~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 172 (401)
+.-+++. ++..+.+.+.+.+..+|+.|++..+|.+++-+|+.+.+ ++-|+++..+.++|.+++|++|..+.
T Consensus 192 ~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 192 DFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 9977664 55888999999999999999999999999999876543 34688889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc---c-----------cCCchhhhhhhhhhccccccccchhhhccccchhhHHHHHHHH
Q 048146 173 VSAGGVLASITLVACVLWVGAV---D-----------GVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFI 238 (401)
Q Consensus 173 ~s~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 238 (401)
+|.++..+-+.+=+.++.++.. + ...++..+|+++|+|..|...|++...|++|+++.-.+..+=+
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHI 343 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHI 343 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHH
Confidence 9998888876665555555431 1 1238889999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC-----------
Q 048146 239 ISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLR----------- 307 (401)
Q Consensus 239 i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~----------- 307 (401)
-..++-.++|..+|++|+|.+++.+..|+|+.... .+.+++.++..+.|||+-++.+.+.+|+-+...
T Consensus 344 AAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk-~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys 422 (524)
T KOG4303|consen 344 AAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFK-ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYS 422 (524)
T ss_pred HHHHHHHHHHHheeeeechhhHHHHhcCCCccchh-hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeC
Confidence 88999999999999999999999999999986554 466778889999999999999999999965432
Q ss_pred -CCCCc--hhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccchhHHHHHHHHHHHhhH
Q 048146 308 -KSRPI--SILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGAL 384 (401)
Q Consensus 308 -~~~~~--~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~ 384 (401)
+.+.+ -..+|.+.++.+.+.|+.+|.+..+++++|++.+..++|+.|++||+++.+++ ..+.++..+..++++|..
T Consensus 423 ~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~-L~~~e~~fD~~Ii~~G~~ 501 (524)
T KOG4303|consen 423 PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT-LNNFEKRFDQGIIIMGCS 501 (524)
T ss_pred CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh-hhhHHHhhheeEEEEeee
Confidence 12233 34788999999999999999999999999999999999999999999998887 677889999999999999
Q ss_pred HhhHhhHHHHHHHHHh
Q 048146 385 AAVVGTYTSLKQIVTH 400 (401)
Q Consensus 385 ~~v~g~~~~i~~l~~~ 400 (401)
+++.|.|.+..+++++
T Consensus 502 ~~vsG~y~S~~~Li~A 517 (524)
T KOG4303|consen 502 VCVSGVYFSSMELIRA 517 (524)
T ss_pred EEEEeEehhhHHHHHH
Confidence 9999999999999975
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-33 Score=272.19 Aligned_cols=369 Identities=18% Similarity=0.211 Sum_probs=295.1
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CChHHHHHHhc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLI-KTYPDIGDLAF 97 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~-~~y~~~~~~~~ 97 (401)
++.+++.+..++++++.++++|+|+|++|++++..|+. +++.+++.+..++++++++.|+..+.++. .++.+++++.+
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 35677889999999999999999999999999999988 99999999999999999999999998766 49999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHH
Q 048146 98 GCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGG 177 (401)
Q Consensus 98 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~ 177 (401)
||++++++++.+.+.+++.+.+|.+..+|.+++++++...... ..|....+++..++.++++.++...++..+.+.
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~ 158 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLV 158 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999986432211 235577777888888899999999999999998
Q ss_pred HHHHHHHHHHHHhhhcccc---------------CCchhhhhhhhhhccccccccchhhhcccc-ch-hhHHHHHHHHHH
Q 048146 178 VLASITLVACVLWVGAVDG---------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQ-FSKVLAACFIIS 240 (401)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~-~~~~~~~~~~i~ 240 (401)
...+.+.++...+...... ..+..++|+++|||++|+++|++.+|||++ +| .+|+..++..+.
T Consensus 159 ~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~ 238 (415)
T COG0814 159 FGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIA 238 (415)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHH
Confidence 8888887777666543211 116789999999999999999999999987 44 999999999999
Q ss_pred HHHHHHHHhHHHhhhcccchhhhHhccCCcchhhH-------------HHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC
Q 048146 241 TANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSK-------------LAIYTTLINPLTKYAVIITPIATALEDTPHLR 307 (401)
Q Consensus 241 ~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~-------------i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 307 (401)
.++|..++.++|..+|+++++++++++++.+.... ....+..+.+.++|--+....+|..++.+..+
T Consensus 239 ~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~ 318 (415)
T COG0814 239 LVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS 318 (415)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc
Confidence 99999999999999999999999999987653221 22233334444554444455556666655432
Q ss_pred C---CCC-----chhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccchhHHHHHHHHH
Q 048146 308 K---SRP-----ISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGIL 379 (401)
Q Consensus 308 ~---~~~-----~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~ 379 (401)
+ +|. .........+..+...+...|....+.+.+|+.....+.+..|...+.|....+ +.+.++....+++
T Consensus 319 ~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~-~~~g~~~~~~~v~ 397 (415)
T COG0814 319 NSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK-VYGGNFLLLLLVL 397 (415)
T ss_pred cCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee-ecCCCchhHHHHH
Confidence 1 111 133445556666777777778888888888888888888888888887776655 2333236788999
Q ss_pred HHhhHHhhHhhHHH
Q 048146 380 LIGALAAVVGTYTS 393 (401)
Q Consensus 380 ~~g~~~~v~g~~~~ 393 (401)
++|+..+....+..
T Consensus 398 ~~Gi~~~~~~~~~~ 411 (415)
T COG0814 398 LFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888776654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.97 E-value=4.8e-28 Score=231.84 Aligned_cols=356 Identities=19% Similarity=0.215 Sum_probs=271.1
Q ss_pred CCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchh
Q 048146 24 EGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGR 102 (401)
Q Consensus 24 ~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~ 102 (401)
++.+.+++.+.+.++++|+|+|+||.+.+..|.. +.+.+++++..+++++.++.|...+.++..++.+++++++||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 3568899999999999999999999999999988 999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHH
Q 048146 103 AMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASI 182 (401)
Q Consensus 103 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 182 (401)
++..+.+.+..+..+++|....++.++++++...+.. .+ ++....++.++...+... +.+...+++..-+...+
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~----~~-~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTD----LS-PWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCC----Cc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987654311 11 223333333333332222 33344555444433333
Q ss_pred HHHHHHHhhhcc--------c-------cCCchhhhhhhhhhccccccccchhhhcc-ccchhhHHHHHHHHHHHHHHHH
Q 048146 183 TLVACVLWVGAV--------D-------GVGLPTAVSLYTFCYCGHSVFPTLCNSMK-DRRQFSKVLAACFIISTANYGS 246 (401)
Q Consensus 183 ~~~~~~~~~~~~--------~-------~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~~~~i~~~~y~~ 246 (401)
............ + ....+.++++.++||..|+.+|++.+.++ |+||.+|++..+..+..++|++
T Consensus 155 ~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~ 234 (394)
T PF03222_consen 155 ISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLL 234 (394)
T ss_pred HHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222211 1 01167899999999999999999999999 5699999999999999999998
Q ss_pred HHhHHHhhh-----------cccchh--hhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCCCch
Q 048146 247 MAILGYLMY-----------GDHLKS--QVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPIS 313 (401)
Q Consensus 247 ~g~~gy~~f-----------g~~~~~--~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 313 (401)
+-...-..- +++..+ ..+.+..+++....+...+..+.+.+||--+...++|.++|.++.++++..|
T Consensus 235 w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~~~~r 314 (394)
T PF03222_consen 235 WVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNNSSGR 314 (394)
T ss_pred HHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccch
Confidence 744443311 111111 2233445556666677888899999999999999999999999876666667
Q ss_pred hhhHHHHHHHHHHHHhhcc-chhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccchh----HHHHHHHHHHHhhHHh
Q 048146 314 ILVRTVLVISTVIVAITIP-FFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGL----ELMLIVGILLIGALAA 386 (401)
Q Consensus 314 ~~~~~~~~~~~~~~a~~~p-~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~----~~~~~~~~~~~g~~~~ 386 (401)
........+++.+++...| .+...+++.| ....++..++|+++.+|.|++++...+ .+.....++++|++..
T Consensus 315 ~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 315 LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 7777888889999999998 6889999999 888999999999999999887643323 3555556666665544
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.97 E-value=1.7e-27 Score=225.81 Aligned_cols=361 Identities=15% Similarity=0.131 Sum_probs=272.4
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
.++++.+.+++.+.+.++++|+|+|++|.+.++.|.. +.+++++++..+.+++.++.|...+.++..++.+++|+.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 5677789999999999999999999999999999999 999999999999999999999988888889999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
+|+.+..+++.+..+..+++|....+|.+++.++....+ .+ ++.-.+++.++.-...+. +.+...+++-.-+.
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~-----i~-~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~ 158 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN-----VP-ARAAGFGFALLVAFVVWL-STKAVSRMTAIVLG 158 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC-----Cc-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998753211 11 223334444444444433 34555555544333
Q ss_pred HHHHHHHHHHhhh---cc-----c---cC-----Cchhhhhhhhhhccccccccchhhhccc-cchhhHHHHHHHHHHHH
Q 048146 180 ASITLVACVLWVG---AV-----D---GV-----GLPTAVSLYTFCYCGHSVFPTLCNSMKD-RRQFSKVLAACFIISTA 242 (401)
Q Consensus 180 ~~~~~~~~~~~~~---~~-----~---~~-----~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~~~~i~~~ 242 (401)
..+...+..+... .. + .. ..+.+++++.+||+.|+++|++++++++ +||.+|++..+..+..+
T Consensus 159 ~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv 238 (414)
T PRK10483 159 AKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALA 238 (414)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 3333222222211 11 0 11 1568899999999999999999999885 68999999999999999
Q ss_pred HHHHHHhHHHhhhcccc---------hhhhH-h---ccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCC
Q 048146 243 NYGSMAILGYLMYGDHL---------KSQVT-L---NLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKS 309 (401)
Q Consensus 243 ~y~~~g~~gy~~fg~~~---------~~~il-~---~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 309 (401)
+|+.+-......-+++. +-+.+ . +..+++....+..++..+.+.+||--+...++|.+.|.++.+++
T Consensus 239 ~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~ 318 (414)
T PRK10483 239 LYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS 318 (414)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99997555555433211 00111 1 22233444456667778899999999999999999999987766
Q ss_pred CCchhhhHHHHHHHHHHHHhhccc-hhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccch----hHHHHHHHHHHHhhH
Q 048146 310 RPISILVRTVLVISTVIVAITIPF-FGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFG----LELMLIVGILLIGAL 384 (401)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~p~-~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~----~~~~~~~~~~~~g~~ 384 (401)
+..|........+++.+++...|+ |-..+++.|.. +.++..++|+++.+|.||+.+.+. ..+.....++.+|+.
T Consensus 319 ~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~ 397 (414)
T PRK10483 319 AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVG 397 (414)
T ss_pred cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHH
Confidence 566777778899999999999995 99999999976 778889999999999997621222 223444666666666
Q ss_pred HhhHh
Q 048146 385 AAVVG 389 (401)
Q Consensus 385 ~~v~g 389 (401)
..+.-
T Consensus 398 ~i~~~ 402 (414)
T PRK10483 398 NALVH 402 (414)
T ss_pred HHHHH
Confidence 55443
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.96 E-value=3.7e-27 Score=223.33 Aligned_cols=359 Identities=13% Similarity=0.107 Sum_probs=268.0
Q ss_pred CCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccch
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKG 101 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 101 (401)
+|+.+...+...+.++++|+|+|+||.+-+++|+. +.+.+++++..+.+|+.++.|...+.++..++.+++|+.+||+|
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW 85 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 34448888999999999999999999999999999 99999999999999999999999888889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHH
Q 048146 102 RAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLAS 181 (401)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 181 (401)
+.+..+...+..+..+++|....++.+++.++...+ ...+ ++...+++.++.-+..+. +.+...+.+-.-....
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~----~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYISANGAIISETISMNLG----YHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc----CCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865211 0111 223334444444444433 3354444444333333
Q ss_pred HHHHHHHHhhhc--------cc---cC-------Cchhhhhhhhhhccccccccchhhhccc-cchhhHHHHHHHHHHHH
Q 048146 182 ITLVACVLWVGA--------VD---GV-------GLPTAVSLYTFCYCGHSVFPTLCNSMKD-RRQFSKVLAACFIISTA 242 (401)
Q Consensus 182 ~~~~~~~~~~~~--------~~---~~-------~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~~~~i~~~ 242 (401)
+...+..+.... .+ .. ..+.++|++.+||+.|+++|++.+.+++ +||.+|++..+..+..+
T Consensus 160 ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLv 239 (415)
T PRK09664 160 IISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALV 239 (415)
T ss_pred HHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 322222221110 11 11 1566899999999999999999999884 58999999999999999
Q ss_pred HHHHHHhHHHh-----------hhcccchhhh--HhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCC
Q 048146 243 NYGSMAILGYL-----------MYGDHLKSQV--TLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKS 309 (401)
Q Consensus 243 ~y~~~g~~gy~-----------~fg~~~~~~i--l~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 309 (401)
+|+++=.+... ..|++..+-+ ..+-.++++...+..++..+.+.+||--+...++|.+.|.++.+++
T Consensus 240 iY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~ 319 (415)
T PRK09664 240 IYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS 319 (415)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99875333222 2222222211 1111334445556677778899999999999999999999987766
Q ss_pred CCchhhhHHHHHHHHHHHHhhccc-hhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccc----hhHHHHHHHHHHHhhH
Q 048146 310 RPISILVRTVLVISTVIVAITIPF-FGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRF----GLELMLIVGILLIGAL 384 (401)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~p~-~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~----~~~~~~~~~~~~~g~~ 384 (401)
+..|........+++.+.+.+.|+ |-..+++.|.. +.++..++|+++.+|.||+.... ..-+......+.+|++
T Consensus 320 ~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ 398 (415)
T PRK09664 320 HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGIT 398 (415)
T ss_pred cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHH
Confidence 666777778899999999999995 99999999986 67899999999999999762112 2335566667777776
Q ss_pred HhhH
Q 048146 385 AAVV 388 (401)
Q Consensus 385 ~~v~ 388 (401)
..+.
T Consensus 399 ii~~ 402 (415)
T PRK09664 399 VILC 402 (415)
T ss_pred HHHH
Confidence 6554
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.96 E-value=1.7e-26 Score=220.07 Aligned_cols=356 Identities=16% Similarity=0.144 Sum_probs=266.0
Q ss_pred hhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHH
Q 048146 27 TFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMV 105 (401)
Q Consensus 27 s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~ 105 (401)
+..++.+.+.++++|+|+|+||.+.+..|.. +.+.+++++.++.++++.+.|+..+.++..++.+++|+.+||+++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7889999999999999999999999999988 999999999999999999999877777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHH
Q 048146 106 SILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLV 185 (401)
Q Consensus 106 ~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 185 (401)
.+.+.+..+..+.+|....++.+++.++.+... +.+.+ ...+++.++..... ..+.+...+++..-+...+...
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~----~i~~~-~~~l~F~~~~~~iv-~~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWTGI----SMSPT-AGVLLFTLVAGGVV-CVGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC----CCChH-HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888887653211 11111 22222222222222 2233444444443332222222
Q ss_pred HHHHhhhc--------cc-cC---Cchhhhhhhhhhccccccccchhhhccc-cchhhHHHHHHHHHHHHHHHHHHhHHH
Q 048146 186 ACVLWVGA--------VD-GV---GLPTAVSLYTFCYCGHSVFPTLCNSMKD-RRQFSKVLAACFIISTANYGSMAILGY 252 (401)
Q Consensus 186 ~~~~~~~~--------~~-~~---~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~~~~i~~~~y~~~g~~gy 252 (401)
+....... .+ +. ..+.+++++.+||+.|+++|++.+.+++ +||.+|++..+..+..++|+.+-....
T Consensus 158 ~~~~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~l 237 (403)
T PRK15132 158 VVMLALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATL 237 (403)
T ss_pred HHHHHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111 10 11 1678999999999999999999999884 589999999999999999999877777
Q ss_pred hhhcccch----------hhhHhc---cCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCCCchhhhHHH
Q 048146 253 LMYGDHLK----------SQVTLN---LPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTV 319 (401)
Q Consensus 253 ~~fg~~~~----------~~il~~---~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (401)
..-+.+.- ++.+.. ..++++...+...+..+.+.+||--+...++|.+.|.++.++++..|......
T Consensus 238 g~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~~~r~~~~~l 317 (403)
T PRK15132 238 GSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTVGGRLQTGLI 317 (403)
T ss_pred hCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCchhehh
Confidence 65553321 122222 23445555567778888999999999999999999998766555557777889
Q ss_pred HHHHHHHHHhhcc-chhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccchh----HHHHHHHHHHHhhHHhhHh
Q 048146 320 LVISTVIVAITIP-FFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGL----ELMLIVGILLIGALAAVVG 389 (401)
Q Consensus 320 ~~~~~~~~a~~~p-~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~----~~~~~~~~~~~g~~~~v~g 389 (401)
..+++++++...| .+...+++.|.. ..++.+++|+++.+|.+++++.++. .+...++++++|++..+.-
T Consensus 318 ~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~ 391 (403)
T PRK15132 318 TFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQ 391 (403)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999 588899998865 7899999999999999875411122 4667788888888776543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=3.2e-26 Score=220.85 Aligned_cols=327 Identities=14% Similarity=0.145 Sum_probs=255.0
Q ss_pred HHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHH
Q 048146 32 CLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMY 110 (401)
Q Consensus 32 ~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~ 110 (401)
....+++++|+|++++|...++.|.. +++.+++.+.++.++..++.|...+.|+..++.+++++.+||+++++..+...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 44678999999999999999999987 99999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHh
Q 048146 111 LELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLW 190 (401)
Q Consensus 111 ~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~ 190 (401)
+.++..+.+|....++.+.++++...... . .+....++..+++.++. .++.+...+++.+.+...+..++.++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFP----W-SARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCC----c-cHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988876432210 1 12233334444444544 567788888888877776655444333
Q ss_pred hhccc-------c--------CCchhhhhhhhhhccccccccchhhhcc-ccchhhHHHHHHHHHHHHHHHHHHhHHHhh
Q 048146 191 VGAVD-------G--------VGLPTAVSLYTFCYCGHSVFPTLCNSMK-DRRQFSKVLAACFIISTANYGSMAILGYLM 254 (401)
Q Consensus 191 ~~~~~-------~--------~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~~~~i~~~~y~~~g~~gy~~ 254 (401)
.+..+ + .++..+++...++|++|++++++.+|++ ||||.+|++..+..++.++|+.+.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22211 0 1245677889999999989999999997 558999999999999999999988777776
Q ss_pred hcccchhhhHh-------------ccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCCCchhhhHHHHH
Q 048146 255 YGDHLKSQVTL-------------NLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLV 321 (401)
Q Consensus 255 fg~~~~~~il~-------------~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (401)
.+.+.-.+... +.-++++...+...+..+.+.+++.....+.+|...+.+++++++.+|........
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~~~~~~~~~~ 316 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKGRFKTGLLTF 316 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchhhhhhH
Confidence 65433222111 11122233345566777888999999999999999998877654555677778888
Q ss_pred HHHHHHHhhccchh-HHHHhhhhhhHHHHHHhhhhhhHHhhhccc
Q 048146 322 ISTVIVAITIPFFG-YVLAFTGSFLGVTVSILLPCLCYLRINKTA 365 (401)
Q Consensus 322 ~~~~~~a~~~p~~~-~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~ 365 (401)
+++.++|.+.|+.. ..++..| +.+.++.+++|+++++|.||++
T Consensus 317 ~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 317 LPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred HhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999655 9999999 7789999999999999988764
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.92 E-value=1.7e-22 Score=191.64 Aligned_cols=360 Identities=15% Similarity=0.139 Sum_probs=260.4
Q ss_pred CchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC-CCCCChHHHHHHhcccchh
Q 048146 25 GTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDAN-PLIKTYPDIGDLAFGCKGR 102 (401)
Q Consensus 25 ~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~-~~~~~y~~~~~~~~G~~~~ 102 (401)
+.........+.++++|+|+|+||-+....|.. +++.+++++.+++++++.+.|...+. ++..++.+++++.+||+++
T Consensus 18 ~~~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 18 RKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGG 97 (443)
T ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHH
Confidence 344555679999999999999999999999977 99999999999999999999987765 6778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHH
Q 048146 103 AMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASI 182 (401)
Q Consensus 103 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 182 (401)
.+..+++.+..+..+.+|...+.+.+++++.+..+. . .. .+....+++.+++...... +-+..-+++..-+...+
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~-~--~~-~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGF-A--PL-NRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFI 172 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-C--Cc-cHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888865443211 0 11 1334444444444444333 44555555544433333
Q ss_pred HHHHHHHhhhc--------cc-c--------C-----Cchhhhhhhhhhccccccccchhhh----cc-----c--cchh
Q 048146 183 TLVACVLWVGA--------VD-G--------V-----GLPTAVSLYTFCYCGHSVFPTLCNS----MK-----D--RRQF 229 (401)
Q Consensus 183 ~~~~~~~~~~~--------~~-~--------~-----~~~~~~~~~~faf~~~~~~~~i~~~----m~-----~--p~~~ 229 (401)
...+....+.. .+ + . ..+.++|+++|||+.|+++|+.... .+ | ++|.
T Consensus 173 ~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~ 252 (443)
T PRK13629 173 ASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKC 252 (443)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHH
Confidence 33332222211 10 1 1 1567789999999999999999887 43 4 5789
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhhcccch-------hhhHh---c-cCCc--------chhhHHHHHHHHHhhhhhhh
Q 048146 230 SKVLAACFIISTANYGSMAILGYLMYGDHLK-------SQVTL---N-LPIR--------KISSKLAIYTTLINPLTKYA 290 (401)
Q Consensus 230 ~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~-------~~il~---~-~~~~--------~~~~~i~~~~~~i~~~~~~p 290 (401)
+|++..+..+..++|+.+-+.+.+.-+++.- .+++. | +++. +....+..++..+.+.+||-
T Consensus 253 ~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFl 332 (443)
T PRK13629 253 SQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFF 332 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887764431 12121 1 2321 33444556677778999999
Q ss_pred hhHhhHHHHHhccCCC---C--C----CCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhh
Q 048146 291 VIITPIATALEDTPHL---R--K----SRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRI 361 (401)
Q Consensus 291 ~~~~~~~~~~~~~~~~---~--~----~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~ 361 (401)
.+...++|.++.+..+ + + ++..+.....++.+.++.++...|++-.+++-.|+-....+.|++|...-+|.
T Consensus 333 Gv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv 412 (443)
T PRK13629 333 GHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA 412 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence 9999999999997721 1 1 12235677778888999999999999999996655557789999999999987
Q ss_pred hcccccchhHHHHHHHHHHHhhHHhhHhhH
Q 048146 362 NKTARRFGLELMLIVGILLIGALAAVVGTY 391 (401)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~ 391 (401)
..-+| . ..+..++++.+.|++......|
T Consensus 413 p~l~~-y-r~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 413 PSLAK-Y-RGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHH-h-CCCchhHHHHHHHHHHHHHHHH
Confidence 55431 1 1233578888888876654444
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.91 E-value=2.1e-22 Score=192.61 Aligned_cols=349 Identities=12% Similarity=0.128 Sum_probs=255.1
Q ss_pred hhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCChHHHHHHhcccchhHH
Q 048146 27 TFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPL-IKTYPDIGDLAFGCKGRAM 104 (401)
Q Consensus 27 s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~-~~~y~~~~~~~~G~~~~~~ 104 (401)
...+..+.+.++++|+|+|++|...++.||. .++..++...+++++++.+.|.....+. ..++.|++++.+||+++.+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 4567889999999999999999999999998 7788888888889999999998554443 7999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHH
Q 048146 105 VSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITL 184 (401)
Q Consensus 105 ~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 184 (401)
..+.+.+..+..+.+|....++.+++++.+..... . ..+....+..++..-.....+.+...+++.+-+...+..
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~----~-p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~ 158 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA----P-PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLI 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----C-cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888876533211 1 122333333333333344557788888877666554444
Q ss_pred HHHHHhhhccc---------c--C----Cchhhhhhhhhhccccccccchh----hhcc--c--cchhhHHHHHHHHHHH
Q 048146 185 VACVLWVGAVD---------G--V----GLPTAVSLYTFCYCGHSVFPTLC----NSMK--D--RRQFSKVLAACFIIST 241 (401)
Q Consensus 185 ~~~~~~~~~~~---------~--~----~~~~~~~~~~faf~~~~~~~~i~----~~m~--~--p~~~~~~~~~~~~i~~ 241 (401)
.+.+......+ + . .+..+.+...+||.+|+++++.. +|.+ | ++|.+|++..+..+..
T Consensus 159 l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 159 LVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 33333222110 1 1 16689999999999999999997 3344 3 4688999999999999
Q ss_pred HHHHHHHhHHHhhhcccchhh-------hHh---ccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCC----CC
Q 048146 242 ANYGSMAILGYLMYGDHLKSQ-------VTL---NLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPH----LR 307 (401)
Q Consensus 242 ~~y~~~g~~gy~~fg~~~~~~-------il~---~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~----~~ 307 (401)
++|+.+-+.+....+++.-.. .+. |-.+++....+...+..+.+.+||-.+...++|.+++.+. .+
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~ 318 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK 318 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 999999888888877544221 111 1223344445566677788999999999999999999872 11
Q ss_pred ----CCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccccchhH-HHHHHHHHHHh
Q 048146 308 ----KSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLE-LMLIVGILLIG 382 (401)
Q Consensus 308 ----~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~-~~~~~~~~~~g 382 (401)
+++..+.....++.+.++.++...|++-.+++-.|+--...+.|++|...-+|...-+ +.| +..++++.+.|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~---~~~~~~~~~fv~~~g 395 (397)
T TIGR00814 319 GKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALK---KYRGRISNVFVTVIG 395 (397)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH---HhCCCcchheeEeee
Confidence 1122345667778889999999999999999955555567899999999999875533 222 23466666665
Q ss_pred h
Q 048146 383 A 383 (401)
Q Consensus 383 ~ 383 (401)
+
T Consensus 396 ~ 396 (397)
T TIGR00814 396 L 396 (397)
T ss_pred c
Confidence 4
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.77 E-value=2.4e-15 Score=147.93 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=161.1
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK 100 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 100 (401)
+++|+.+.++.+...+++++|+|++.+|...++.|..+++.+++.+++.......+.|...+.|+.....+.+++.+||+
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 35778999999999999999999999999988888778889999999999999999998888888899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHH-HHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVL-LTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
.+++..+..++.......++.....+++..+++.... ....+.. +..+...-..-.++.+...+++.+.+.
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~ 154 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLS--------PVQICLATIGVLWLCTVANFGGARITGQISSVTVW 154 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999888777665555555555666665542110 1111111 111111222224566666666665554
Q ss_pred HHHHHHHHHHhhh-----cc------ccCC------chhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHH
Q 048146 180 ASITLVACVLWVG-----AV------DGVG------LPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIIST 241 (401)
Q Consensus 180 ~~~~~~~~~~~~~-----~~------~~~~------~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~ 241 (401)
..+..++.++..+ .. ++.+ +..++....|+|.|.+......+|+||| |+.||++..+..++.
T Consensus 155 ~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~ 234 (438)
T PRK10655 155 GVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAA 234 (438)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHH
Confidence 4433222222111 00 0111 2234667789999999999999999999 589999999999999
Q ss_pred HHHHHHHhHHHhh
Q 048146 242 ANYGSMAILGYLM 254 (401)
Q Consensus 242 ~~y~~~g~~gy~~ 254 (401)
++|++........
T Consensus 235 ~~Y~l~~~~~~~~ 247 (438)
T PRK10655 235 VIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHhC
Confidence 9999876554433
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.73 E-value=2.3e-14 Score=140.64 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=163.8
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK 100 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 100 (401)
+++|+.+.++.....+++++|+|++.+|...++.|...+..+++.++........+.|...+.|+.+...+.+++ +|++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 577889999999999999999999999999998887677888888888888899999999999998888888989 8999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLA 180 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~ 180 (401)
..+...+..+........++.....+++..+++....+ . ....+.++... ..-+...+..|....++.+....
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~-----~-~~~~~~~~i~~-~~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP-----I-PAGIACIAIVW-VFTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh-----H-HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998776555555555555666776666533211 0 01111111111 12222345666666666655544
Q ss_pred HHHHHHHHHhhhc---c--------cc------CCchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHHH
Q 048146 181 SITLVACVLWVGA---V--------DG------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIISTA 242 (401)
Q Consensus 181 ~~~~~~~~~~~~~---~--------~~------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~~ 242 (401)
.+..++..+..+. . +. .++..++....|+|.|.+......+|+||| |+.||++..+..++.+
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 4433222211110 0 00 115567788899999999999999999999 6899999999999999
Q ss_pred HHHHHHhHHHhhhc
Q 048146 243 NYGSMAILGYLMYG 256 (401)
Q Consensus 243 ~y~~~g~~gy~~fg 256 (401)
+|++.........+
T Consensus 234 lYil~~~~~~~~~p 247 (435)
T PRK10435 234 IYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHhcCC
Confidence 99998776655444
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.72 E-value=3e-14 Score=140.30 Aligned_cols=230 Identities=11% Similarity=0.131 Sum_probs=160.0
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
.+++|+.+.++.+...+++++|+|++.+|....+.|...+..+++.++........+.|.....|+.....+.+++.+||
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~ 83 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGP 83 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCc
Confidence 45778899999999999999999999999988887755666677777777778888999988889888888899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
+..++..+..++.......+......++...+++....+ .......+..+..+-..-.+..|...+++.+...
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~ 156 (445)
T PRK10644 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------LVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 999999988887665555555545555555554422110 0111111111112222224566777777666555
Q ss_pred HHHHHHHHHHhhhc--ccc---------C------Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHH
Q 048146 180 ASITLVACVLWVGA--VDG---------V------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIIST 241 (401)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~---------~------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~ 241 (401)
..+..++.++.... .++ . .+..++....|+|.|.+......+|+||| |+.+|++..+..++.
T Consensus 157 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~ 236 (445)
T PRK10644 157 LALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAA 236 (445)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHH
Confidence 44433222221110 000 0 12345667889999999999999999999 579999999999999
Q ss_pred HHHHHHHhHHHhhhc
Q 048146 242 ANYGSMAILGYLMYG 256 (401)
Q Consensus 242 ~~y~~~g~~gy~~fg 256 (401)
++|++.........+
T Consensus 237 v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 237 VCYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999998776544443
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.70 E-value=6.6e-14 Score=138.88 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=162.9
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhc-HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCChHHHHHHhc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGG-WL-SLIILFLVAVLCWYTGLLLRRCMDANPL-IKTYPDIGDLAF 97 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G-~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~-~~~y~~~~~~~~ 97 (401)
+++|+.+.++.....+++++|+|++.+|....+.| .. .++.+++.++.....+..+.|...+.|+ .+...+.+++.+
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 34678999999999999999999999999877644 44 5677888888888888999999988888 788889999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHH
Q 048146 98 GCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGG 177 (401)
Q Consensus 98 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~ 177 (401)
||+..++..+.++........++.....+++..+++..... .. .......+...+..-....++.+...+++.+.
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~-~~----~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG-NP----VPSILGASVLLWVFTFLVLRGVRQAAFINTIT 158 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-Cc----HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999887766666667666667777666532111 00 01111111112222223356777777777766
Q ss_pred HHHHHHHHHHHHhhh---c--c----c--c---C-------CchhhhhhhhhhccccccccchhhhccccchhhHHHHHH
Q 048146 178 VLASITLVACVLWVG---A--V----D--G---V-------GLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAAC 236 (401)
Q Consensus 178 ~~~~~~~~~~~~~~~---~--~----~--~---~-------~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 236 (401)
....+..++.++..+ . . + + + .+..++....|+|.|.+......+|+||+|+.+|++..+
T Consensus 159 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~ 238 (473)
T TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLG 238 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHH
Confidence 655443322222111 0 0 0 0 0 123456668899999999999999999977899999999
Q ss_pred HHHHHHHHHHHHhHHHhhhc
Q 048146 237 FIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 237 ~~i~~~~y~~~g~~gy~~fg 256 (401)
..++.++|++.........+
T Consensus 239 ~~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 239 TLGALVIYILITLLSLGVLP 258 (473)
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 99999999988766444333
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=99.69 E-value=4.2e-14 Score=138.82 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=167.8
Q ss_pred CCCchhHHHHHHHHHhhhhhhhchhHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccch
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGILSIPYALSQ-GGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKG 101 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~-~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 101 (401)
+|+.+.++.+...+++++|+|++.+|..... .|...++.+++.++........+.|..++.|+.++..+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 5779999999999999999999999976554 555566777777888888888999998888888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc----ccc-chHHHHHHHHHHHhhhccccCchhHHHHHH
Q 048146 102 RAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLK----IGG-KQGFVLLTALIIWPTTWLRSLGILAYVSAG 176 (401)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 176 (401)
+++..+..++.....+..+....++.++.+++....+.+... .+. ...+..+..++..-....++.+...+++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 999999999988888888888888888777653211111000 000 011122222222223335688888888877
Q ss_pred HHHHHHHHHHHHHhhhcc--c-----c--C----Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHHH
Q 048146 177 GVLASITLVACVLWVGAV--D-----G--V----GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIISTA 242 (401)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~--~-----~--~----~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~~ 242 (401)
.....+..++.++..... + . + ++..++....|+|.|.+......+|+||| |+.+|++..+..+..+
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v 241 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTL 241 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHH
Confidence 766655544332222111 1 0 0 14566778999999999999999999999 6789999999999999
Q ss_pred HHHHHHhHHHh
Q 048146 243 NYGSMAILGYL 253 (401)
Q Consensus 243 ~y~~~g~~gy~ 253 (401)
+|+........
T Consensus 242 ~Yil~~~~~~~ 252 (429)
T TIGR00909 242 LYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHhc
Confidence 99998765544
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=99.69 E-value=9e-14 Score=137.22 Aligned_cols=226 Identities=13% Similarity=0.121 Sum_probs=160.7
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYA-LSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~-~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
++.+|+.+.++.....++.++|+|++..|.. .+++|...++.+++.+++....+..+.|...+.|...+..+.+++.+|
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g 96 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWG 96 (458)
T ss_pred hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 3567889999999999999999999998865 556676677888899999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
++..++..+..++.......+.....+.+++.+.+... ...+......+...+. .++.+..++++....
T Consensus 97 ~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 97 PFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVP----------TWIWAAAFFIIINAVN-LVNVRLYGETEFWFA 165 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc----------HHHHHHHHHHHHHHHH-HhcchhhhhHHHHHH
Confidence 99999999998887766666666666666665544211 1122222222222222 456666666554433
Q ss_pred HHHHHHHHHH----H---hhhc----------cccC--------Cchhhhhhhhhhccccccccchhhhcccc-chhhHH
Q 048146 179 LASITLVACV----L---WVGA----------VDGV--------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKV 232 (401)
Q Consensus 179 ~~~~~~~~~~----~---~~~~----------~~~~--------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~ 232 (401)
...+..++.+ + .... .+.. ++..++....|+|.|.+......+|+||| |+.||+
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPra 245 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKA 245 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHH
Confidence 2222111111 1 1100 0000 13567888899999999999999999999 569999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 233 LAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 233 ~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
+..+.....++|+..........+
T Consensus 246 i~~~~~~~~~~y~~~~~~~~~~~~ 269 (458)
T PRK10249 246 VNQVVYRILLFYIGSLVVLLALYP 269 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHheecc
Confidence 999999999999875544443333
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.69 E-value=5.6e-14 Score=138.71 Aligned_cols=229 Identities=15% Similarity=0.123 Sum_probs=164.9
Q ss_pred cccccCCCCchhHHHHHHHHHhhhhhhhchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 048146 17 QQPQQRSEGTTFLRTCLNGLNVVSGVGILSIP-YALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDL 95 (401)
Q Consensus 17 ~~~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~ 95 (401)
+.+.+.+|+.+.++.....+++++|+|++.+| .+.+++|..+++.+++.+++....+..+.|...+.|+.++..+.+++
T Consensus 5 ~~~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 5 QSGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred cchHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 33456889999999999999999999999999 56777887788888999999999999999999888899999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHH
Q 048146 96 AFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSA 175 (401)
Q Consensus 96 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 175 (401)
.+||+..++..+..++.....+.......++.++.+++... ...+..+..++.. ..-.+..+....++.
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~-~~n~~gv~~~~~~~~ 153 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP----------LWLFSLILTIVLT-LTNLYSVKSYGEFEF 153 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHH-HHHHHhcchhhHHHH
Confidence 99999999999999988877777777777777776654321 1122222222222 222445666665555
Q ss_pred HHHHHHHHHHHH----HH--hh-hc--------c---c-----cC---Cchhhhhhhhhhccccccccchhhhcccc-ch
Q 048146 176 GGVLASITLVAC----VL--WV-GA--------V---D-----GV---GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQ 228 (401)
Q Consensus 176 ~~~~~~~~~~~~----~~--~~-~~--------~---~-----~~---~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~ 228 (401)
......+..++. .+ .. .. . + +. ++..++....|+|.|.+......+|+||| |+
T Consensus 154 ~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~ 233 (452)
T TIGR01773 154 WFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKS 233 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhH
Confidence 443332221111 11 00 00 0 0 00 14556778999999999999999999999 57
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 229 FSKVLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 229 ~~~~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
.||++..+.....++|+..........+
T Consensus 234 iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 234 ITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 9999998899999999986554443333
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.68 E-value=1e-13 Score=137.47 Aligned_cols=225 Identities=13% Similarity=0.095 Sum_probs=155.3
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHH-HHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYA-LSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~-~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
+.+|+.+.++.....+++++|+|++..|.. .+.+|.. .++.+++.+++.......+.|...+.|+...+.+.+++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 467889999999999999999999988865 5677865 67778888999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
++..++..+..++.....+.......+..++.+.+... ...+..+..++.. +...++.|.....+....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~-~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVP----------VWPWCLLFCALIF-GLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCc----------HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Confidence 99999999998887666655544444444443333210 1122222222222 222445665555543333
Q ss_pred HHHHHHHHHHHh----h--h--c----------c--ccC--------Cchhhhhhhhhhccccccccchhhhcccc-chh
Q 048146 179 LASITLVACVLW----V--G--A----------V--DGV--------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQF 229 (401)
Q Consensus 179 ~~~~~~~~~~~~----~--~--~----------~--~~~--------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~ 229 (401)
...+..++.++. . . . . +.. ++..++....|+|.|.+......+|+||| |+.
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 222222111111 0 0 0 0 000 13445567789999999999999999999 569
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 230 SKVLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 230 ~~~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
+|++..+..++.++|+..........+
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765544444
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.68 E-value=1.5e-13 Score=136.15 Aligned_cols=228 Identities=15% Similarity=0.115 Sum_probs=160.4
Q ss_pred CCchhHHHHHHHHHhhhhhhhchhHHHHH-hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-ChHHHHHHhcccc
Q 048146 24 EGTTFLRTCLNGLNVVSGVGILSIPYALS-QGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIK-TYPDIGDLAFGCK 100 (401)
Q Consensus 24 ~~~s~~~~~~~l~~~~iG~Gil~LP~~~~-~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~-~y~~~~~~~~G~~ 100 (401)
|+.+.++.....+++++|+|++.+|.... .+|.. .++.+++.++.....+..+.|...+.|+.. ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 56889999999999999999999998755 46655 566788888888888999999988888764 8888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLA 180 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~ 180 (401)
..++..+..++.......++.....+.+..+++...... +..........+..+-....+..+..++++.+....
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGN-----NPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-----cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999887766666776666666665554332110 000011111122122222246777777777666555
Q ss_pred HHHHHHHHHh----h--h-c-----cc-c-----C-----CchhhhhhhhhhccccccccchhhhccccchhhHHHHHHH
Q 048146 181 SITLVACVLW----V--G-A-----VD-G-----V-----GLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACF 237 (401)
Q Consensus 181 ~~~~~~~~~~----~--~-~-----~~-~-----~-----~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 237 (401)
.+..++.++. . . . .+ . . ++..++....|+|.|.+......+|.||||+.+|++..+.
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~ 235 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIGL 235 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHHH
Confidence 4432222111 1 0 0 00 0 0 0235667789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhc
Q 048146 238 IISTANYGSMAILGYLMYG 256 (401)
Q Consensus 238 ~i~~~~y~~~g~~gy~~fg 256 (401)
..+.++|+...+..+...+
T Consensus 236 ~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 236 IGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999998877665544
No 25
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.68 E-value=2.6e-14 Score=136.86 Aligned_cols=324 Identities=14% Similarity=0.195 Sum_probs=211.6
Q ss_pred CCchhHHHHHHHHHhhhhhhhchhHHHHHhhc-HHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchh
Q 048146 24 EGTTFLRTCLNGLNVVSGVGILSIPYALSQGG-WLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGR 102 (401)
Q Consensus 24 ~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G-~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~ 102 (401)
++.|.+|....+.++++|+|++.+|....+.+ -.+++..++.++........+.+..+++|+ .+..|+.++.+||+.+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-KNFSEILSKYLGKILG 79 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhhHHHH
Confidence 35789999999999999999999999877644 347777788888888889999999888865 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHH
Q 048146 103 AMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASI 182 (401)
Q Consensus 103 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 182 (401)
.+..+....+....+.......+|.++...-... ..+...+..++..-....+.++...+++.+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t----------p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRT----------PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999988888877777777777777765431111 112223333333334446788888888887766555
Q ss_pred HH-HHHHHhhhccc--c--------CC---chhhh-hhhhhhccccccccchhhhccccchhhHHHHHHHHHHHHHHHHH
Q 048146 183 TL-VACVLWVGAVD--G--------VG---LPTAV-SLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSM 247 (401)
Q Consensus 183 ~~-~~~~~~~~~~~--~--------~~---~~~~~-~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~i~~~~y~~~ 247 (401)
.. ++.+......+ . .+ ...+. ....++|.+.+......+++|||||.+|+...+..++.++|...
T Consensus 150 ~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 150 ILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 44 22222222111 1 11 22233 36779999999999999999999999999999999999999999
Q ss_pred HhHHHhhhcccchhhh----H---hccCCcchh---hHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCCCchhhhH
Q 048146 248 AILGYLMYGDHLKSQV----T---LNLPIRKIS---SKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVR 317 (401)
Q Consensus 248 g~~gy~~fg~~~~~~i----l---~~~~~~~~~---~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (401)
.......+|.+..++. . ....-.+.. -.+.................+.....+++.++.++.|. ...-
T Consensus 230 ~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 307 (359)
T TIGR00912 230 TFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSI--LILP 307 (359)
T ss_pred HHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch--hHHH
Confidence 9988888886544321 1 111111111 11222334455666677777888888888876543322 2222
Q ss_pred HHHHHHHHHHHhhccc-hhH---HHHhhhhhhHHHHHHhhhhhhHHhhhcc
Q 048146 318 TVLVISTVIVAITIPF-FGY---VLAFTGSFLGVTVSILLPCLCYLRINKT 364 (401)
Q Consensus 318 ~~~~~~~~~~a~~~p~-~~~---i~~l~G~~~~~~~~~ilP~~~~l~~~~~ 364 (401)
... ..+.++. .|| .+. ..+..+ ..+....+++|.++.+...-|
T Consensus 308 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 308 VLM--VIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred HHH--HHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 221 2222332 343 322 222223 233456778999877755433
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=99.67 E-value=1.2e-13 Score=137.59 Aligned_cols=227 Identities=11% Similarity=0.086 Sum_probs=154.2
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPY-ALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~-~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
+.+|+.+.++.....++.++|+|++..|. +.+++|..+++..++.+++....+..+.|.....|+..+..+.+++.+|+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 36788999999999999999999998886 56678876778888999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
+..+++.+..++.............+.....+ +..... ....+..++.++...+. .+..|....++.+...
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~~~-------~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFGGV-------PQWVFALAALTIVGTMN-MIGVKWFAEMEFWFAL 175 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCC-------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999988865544444444444443322 111100 11122222222222222 4466666666554443
Q ss_pred HHHHHHHHH----Hh--hh-c-cc----------c-CC--------chhhhhhhhhhccccccccchhhhcccc-chhhH
Q 048146 180 ASITLVACV----LW--VG-A-VD----------G-VG--------LPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSK 231 (401)
Q Consensus 180 ~~~~~~~~~----~~--~~-~-~~----------~-~~--------~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~ 231 (401)
..+..++.+ +. .. . .+ + .+ ...++....|+|.|.+.+....+|.||| |+.||
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr 255 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH
Confidence 222211111 11 10 0 00 0 00 1233456889999999999999999999 56999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 232 VLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 232 ~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
++..+.....++|+..........+
T Consensus 256 Ai~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 256 AINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecc
Confidence 9999999999999987665544443
No 27
>PRK11021 putative transporter; Provisional
Probab=99.67 E-value=5.1e-13 Score=130.25 Aligned_cols=215 Identities=18% Similarity=0.224 Sum_probs=151.7
Q ss_pred hhHHHHHHHHHhhhhhhhchhHHHHH-hhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHH
Q 048146 27 TFLRTCLNGLNVVSGVGILSIPYALS-QGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMV 105 (401)
Q Consensus 27 s~~~~~~~l~~~~iG~Gil~LP~~~~-~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~ 105 (401)
+.+++....+++++|+|++.+|.... .+|...++.+++.++........+.|...+.|+.......+++.+||+..+..
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~ 81 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVT 81 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHH
Confidence 67899999999999999999997644 56755788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHH
Q 048146 106 SILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLV 185 (401)
Q Consensus 106 ~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 185 (401)
.+..+........+......+.++..++... .......+...+.+-+...+..|...+++....+..+..+
T Consensus 82 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~ 152 (410)
T PRK11021 82 GWLFLSVIPVGLPAALQIAAGFGQALFGWSS---------WQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALV 152 (410)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC---------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9988765444444444444455555543211 0112221222222223335677777776665443332222
Q ss_pred HHHHhhhccc----------cC---Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHHHHHHHHHhH
Q 048146 186 ACVLWVGAVD----------GV---GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIISTANYGSMAIL 250 (401)
Q Consensus 186 ~~~~~~~~~~----------~~---~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~~~y~~~g~~ 250 (401)
.........+ +. ++..++....|+|.|.+...+..+|+||| |+.||++..+..++.++|++....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 153 VAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 2222111100 00 14567788899999999999999999999 679999999999999999998754
No 28
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.66 E-value=9.2e-14 Score=146.17 Aligned_cols=232 Identities=12% Similarity=0.077 Sum_probs=172.0
Q ss_pred ccCCCCchhHHHHHHH-HHhhhhhhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCChHHHHHH
Q 048146 20 QQRSEGTTFLRTCLNG-LNVVSGVGIL-SIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA-NPLIKTYPDIGDL 95 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l-~~~~iG~Gil-~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~-~~~~~~y~~~~~~ 95 (401)
+.++++.++++.++.- +.+++|+|++ .+++...++|.. +++.++++++++..++..+.+.+.. .++.+.-..+.++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 3456788888888888 9999999996 567888899987 8899999999999999999998886 6777777788889
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHH
Q 048146 96 AFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSA 175 (401)
Q Consensus 96 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 175 (401)
.+|+..+..+.+..++.+...+..|....++++..+++............+.+.+..+..+++..+. ....+...+++.
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~q~ 230 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKAQV 230 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 9999999999999999888889999999999998887532210000011112344444444444444 457788788777
Q ss_pred HHHHHHHHHHHHHHhhhcc---------------------------ccCC-chhhhhhhhhhccccccccchhhhcccc-
Q 048146 176 GGVLASITLVACVLWVGAV---------------------------DGVG-LPTAVSLYTFCYCGHSVFPTLCNSMKDR- 226 (401)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~---------------------------~~~~-~~~~~~~~~faf~~~~~~~~i~~~m~~p- 226 (401)
+.++..++.++.++..++. .+.+ +...++++.+||.|.....++..|+|||
T Consensus 231 vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~ 310 (953)
T TIGR00930 231 LFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQ 310 (953)
T ss_pred HHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 7666655544443332110 0001 4456667777999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHHH
Q 048146 227 RQFSKVLAACFIISTANYGSMAILGY 252 (401)
Q Consensus 227 ~~~~~~~~~~~~i~~~~y~~~g~~gy 252 (401)
|++||++..++.+++++|+++.+...
T Consensus 311 r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 311 KAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999976433
No 29
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.65 E-value=4e-14 Score=135.02 Aligned_cols=339 Identities=14% Similarity=0.089 Sum_probs=221.9
Q ss_pred ccccCCCCchhHHHHHHHHHhhhhhhhchhHHHHH-hhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHH
Q 048146 18 QPQQRSEGTTFLRTCLNGLNVVSGVGILSIPYALS-QGGWL--SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGD 94 (401)
Q Consensus 18 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~-~~G~~--gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~ 94 (401)
++.+.+|+.+.+.++..++++++|+|++.-|.... ++|-+ +.+.++++++++...+.+.+|.....|+.+.......
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~ 85 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYIS 85 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHH
Confidence 34567889999999999999999999999998765 46654 7788999999999999999999888888887788888
Q ss_pred HhcccchhHHHHHHHHHHHHHHH-HHHHHHhhhh-hhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHH
Q 048146 95 LAFGCKGRAMVSILMYLELYFVA-VEFLILEGDN-LEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAY 172 (401)
Q Consensus 95 ~~~G~~~~~~~~~~~~~~~~g~~-~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 172 (401)
+++|+.......+.-.+....+. ..+-...+++ ++.+++....+ ....+.....+..++.-.. ..+.+.-.+
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p-----~~~~~lla~~~l~~lt~~n-~~~V~~a~~ 159 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVP-----RVASKLLAAALLVLLTLIN-SFSVKWATR 159 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCc-----hHHHHHHHHHHHHHHHHHh-hhhhhHHHH
Confidence 99999888877777666665554 6777777777 77777621111 0001122222211111111 345566666
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc---------------c--C---Cchhhhhhhhhhccccccccchhhhcccc-chhhH
Q 048146 173 VSAGGVLASITLVACVLWVGAVD---------------G--V---GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSK 231 (401)
Q Consensus 173 ~s~~~~~~~~~~~~~~~~~~~~~---------------~--~---~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~ 231 (401)
++.+..++.+..+..++..+... + . ++..++-...|||.|...+-.+.+|+||| |.+||
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~ 239 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchH
Confidence 66666677776666666544211 0 0 16678889999999999999999999999 67999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhcc--cchhhhHh------ccCCcchhhHHHHHHHHHhhhhhhhhhHhhH-HH----
Q 048146 232 VLAACFIISTANYGSMAILGYLMYGD--HLKSQVTL------NLPIRKISSKLAIYTTLINPLTKYAVIITPI-AT---- 298 (401)
Q Consensus 232 ~~~~~~~i~~~~y~~~g~~gy~~fg~--~~~~~il~------~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~-~~---- 298 (401)
++.+++.++++.|+++-+..+.+... ...++... .++.-.+... +...++.+.+.--.++.. |.
T Consensus 240 Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip---~~ValS~~G~~n~~ifs~SR~~~~~ 316 (479)
T KOG1287|consen 240 AILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIP---FSVALSLIGSLNSVIFSSSRLFYAG 316 (479)
T ss_pred HHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999987766655432 11122111 1122122222 222222222222222221 21
Q ss_pred HHhccCCCC----CCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhccc
Q 048146 299 ALEDTPHLR----KSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTA 365 (401)
Q Consensus 299 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~ 365 (401)
+-|..++.. +.+..--...+.+.....++..+.+|+..++++.+-..........=+++++|.++++
T Consensus 317 areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 317 AREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 222233322 2222222333444445555566677999999999988888888888899999887776
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.64 E-value=3.2e-13 Score=133.77 Aligned_cols=223 Identities=12% Similarity=0.135 Sum_probs=154.6
Q ss_pred cccCCCCchhHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 048146 19 PQQRSEGTTFLRTCLNGLNVVSGVGILSIPY-ALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 19 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~-~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~ 97 (401)
+++.+|+.+.++.....+++++|+|++..|. +.+++|...+..+++.+++.......+.|.....+...++.+.+++.+
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLL 94 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHh
Confidence 3458899999999999999999999998875 677788756667777888888888888887766567777889999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHH
Q 048146 98 GCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGG 177 (401)
Q Consensus 98 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~ 177 (401)
||...++..+..++.......+.....+.+++.+.+... ...+..++..+...+. .++.+....++.+.
T Consensus 95 g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~----------~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~ 163 (469)
T PRK11049 95 GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLS----------DWVASLAVVLLLLSLN-LATVKMFGEMEFWF 163 (469)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 999999999999987765555566666666665544211 1122222222222222 44666666666554
Q ss_pred HHHHHHHHHHHHhh------h----c----------cccC--------Cchhhhhhhhhhccccccccchhhhcccc-ch
Q 048146 178 VLASITLVACVLWV------G----A----------VDGV--------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQ 228 (401)
Q Consensus 178 ~~~~~~~~~~~~~~------~----~----------~~~~--------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~ 228 (401)
....+..++.++.. . . .+.. ++..++....|+|.|.+.+....+|+||| |+
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 243 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKS 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhH
Confidence 44332222211110 0 0 0000 14567778899999999999999999999 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHH
Q 048146 229 FSKVLAACFIISTANYGSMAILGY 252 (401)
Q Consensus 229 ~~~~~~~~~~i~~~~y~~~g~~gy 252 (401)
.||++..+.....++|.+......
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHe
Confidence 899998878888888887665544
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.64 E-value=3.4e-13 Score=135.71 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=166.8
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHHH--HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYAL--SQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~--~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~ 97 (401)
++.+|+.+.++.....++.++|+|++.+|... ..+|...++.+++.++.+...+..+.|...+.|+.++....+++.+
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~ 103 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTV 103 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHh
Confidence 35688899999999999999999999999653 3478666777888888899999999999999888888888889999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc----ccc-----cccccccchHHHHHHHHHHHhhhccccCc
Q 048146 98 GCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFG----FII-----SGLKIGGKQGFVLLTALIIWPTTWLRSLG 168 (401)
Q Consensus 98 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 168 (401)
|+...++..+..++.....+.+.....+++++.++.... ... +.... ......++..++. -....++.|
T Consensus 104 G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~-~~~~~a~~ii~l~-~~ln~~Gik 181 (557)
T TIGR00906 104 GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAE-YPDFFAVCLILLL-AVLLSFGVK 181 (557)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccc-cchHHHHHHHHHH-HHHHHhchh
Confidence 999999999999987776666666666666666553210 000 00000 0112222222222 233357888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcc-----c----------c------CCchhhhhhhhhhccccccccchhhhcccc-
Q 048146 169 ILAYVSAGGVLASITLVACVLWVGAV-----D----------G------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR- 226 (401)
Q Consensus 169 ~l~~~s~~~~~~~~~~~~~~~~~~~~-----~----------~------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p- 226 (401)
..++++.+.....+..++.++..+.. + + .++..+.....|+|.|.+.+.+..+|.|||
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 88888777666555443333322211 0 0 014456778889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHHHhh
Q 048146 227 RQFSKVLAACFIISTANYGSMAILGYLM 254 (401)
Q Consensus 227 ~~~~~~~~~~~~i~~~~y~~~g~~gy~~ 254 (401)
|+.||++..+..++.++|+++...-...
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~ 289 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLM 289 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5699999999999999999987654443
No 32
>PRK10746 putative transport protein YifK; Provisional
Probab=99.63 E-value=1.1e-12 Score=129.37 Aligned_cols=225 Identities=12% Similarity=0.125 Sum_probs=159.0
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPY-ALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~-~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
+.+|+.+.++..+..+++++|+|++..|. +.+.+|.-.++..++.+++....+..+.|.....|+..++.+.+++.+|+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 46678999999999999999999998885 46667775667788888888999999999998899999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
+.+++..+..++.....+.......+.+++.+++... ...+..+..++..-+. .++.+....+......
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIAVALVALAN-LAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 9999999999988777777777777777776654321 1122222222222222 3455555554433222
Q ss_pred HHHHH----HH-H--HHhhh---------ccc---cC--------Cchhhhhhhhhhccccccccchhhhcccc-chhhH
Q 048146 180 ASITL----VA-C--VLWVG---------AVD---GV--------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSK 231 (401)
Q Consensus 180 ~~~~~----~~-~--~~~~~---------~~~---~~--------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~ 231 (401)
..+.. ++ . +.... ..+ .. ++..++....|+|.|.+.+....+|+||| |+.||
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 22111 11 0 11111 000 00 13467888999999999999999999999 67999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 232 VLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 232 ~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
++..+.....++|+..........+
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p 260 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFP 260 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeC
Confidence 9999999999999986554444443
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.63 E-value=6.6e-13 Score=131.04 Aligned_cols=218 Identities=11% Similarity=0.104 Sum_probs=156.9
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYA-LSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~-~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
++.+|+.+.++..+..+++++|+|++..|.. .+++|...++..++.++.....+..+.|...+.|...++.+.+++.+|
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 3578999999999999999999999998865 445665466778888888888999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
|...++..+..++.....+.......++.++.+.++.. ...+..+...+...+. ....|....++.+..
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIP----------TWVSAAVFFVVINAIN-LTNVKVFGEMEFWFA 156 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 99999999999998888888888888888876654221 1122222222222222 335555555555443
Q ss_pred HHHHHHHHH-----HHh-hh--------cc---ccC--------Cchhhhhhhhhhccccccccchhhhcccc-chhhHH
Q 048146 179 LASITLVAC-----VLW-VG--------AV---DGV--------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKV 232 (401)
Q Consensus 179 ~~~~~~~~~-----~~~-~~--------~~---~~~--------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~ 232 (401)
...+..++. +.. .. .. +.. ++..++....|+|.|.+......+|+||| |+.||+
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrA 236 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKA 236 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHH
Confidence 333222111 111 10 00 000 12345667899999999999999999999 569999
Q ss_pred HHHHHHHHHHHHHHHH
Q 048146 233 LAACFIISTANYGSMA 248 (401)
Q Consensus 233 ~~~~~~i~~~~y~~~g 248 (401)
+..+.....+.|+..-
T Consensus 237 i~~~~~~i~~~y~~~~ 252 (456)
T PRK10238 237 TNQVIYRILIFYIGSL 252 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888888887653
No 34
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.62 E-value=1.3e-12 Score=128.68 Aligned_cols=220 Identities=16% Similarity=0.159 Sum_probs=157.2
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
++.+|+.+.++.....++.++|......+.+.++.|+. -++..++.++.....+..+.|...+.|+.......+++.+|
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G 82 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFG 82 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 45678899999999999999984445668888899987 55666777777777788899999899999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
|+.+++..+..++.......++....+++++.+++... ......+...+.. +...+..+...+++....
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 83 PWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAALVFYIVFI-GINILGVGEAAKLEFVVT 151 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 99999999999888887888888888888877765321 1122222222222 222446666666655444
Q ss_pred HHHHHHHHHHHhhhc--cc------c-----C--------Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHH
Q 048146 179 LASITLVACVLWVGA--VD------G-----V--------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAAC 236 (401)
Q Consensus 179 ~~~~~~~~~~~~~~~--~~------~-----~--------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~ 236 (401)
...+..+...+.... .+ . . ++..++....|+|.|++......+|+||| |+.+|++..+
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s 231 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGA 231 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHH
Confidence 333332221111100 00 0 0 13445566789999999999999999999 5799999999
Q ss_pred HHHHHHHHHHHHhH
Q 048146 237 FIISTANYGSMAIL 250 (401)
Q Consensus 237 ~~i~~~~y~~~g~~ 250 (401)
..++.++|+..-..
T Consensus 232 ~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 232 ILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876443
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.62 E-value=3.3e-12 Score=126.30 Aligned_cols=221 Identities=14% Similarity=0.158 Sum_probs=156.1
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYA-LSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~-~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
++.+|+.+.++.....+++++|+|++.+|.. .+.+|...++..++.++.....+..+.|...+.|+..+..+.+++.+|
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 4677889999999999999999999999876 556776678888899999999999999999889988999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
|...+++.+..++.....+.......+.+.+.+++... ...+.+...++.. ....++.|....++....
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~-~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVLSVVLIIC-AVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHH-HHHHccchhHHHHHHHHH
Confidence 99999999998877666565555556666665544221 1122222222222 223456666666654433
Q ss_pred HHHHHHHHHH-------Hhhhc------------ccc-C-------Cchhhhhhhhhhccccccccchhhhccccc-hhh
Q 048146 179 LASITLVACV-------LWVGA------------VDG-V-------GLPTAVSLYTFCYCGHSVFPTLCNSMKDRR-QFS 230 (401)
Q Consensus 179 ~~~~~~~~~~-------~~~~~------------~~~-~-------~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~ 230 (401)
...+..++.+ ..... .++ . ++..++....|+|.|.+......+|+|||+ +.|
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iP 233 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHH
Confidence 3322211111 11000 000 0 133466678999999999999999999995 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 048146 231 KVLAACFIISTANYGSMAILG 251 (401)
Q Consensus 231 ~~~~~~~~i~~~~y~~~g~~g 251 (401)
|++..+.....++|+......
T Consensus 234 rAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888898775444
No 36
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.62 E-value=2.4e-13 Score=127.78 Aligned_cols=330 Identities=18% Similarity=0.248 Sum_probs=214.4
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
.+.+|..+.++-.+.-++..||+|. +.--.+.+.+|.--++...++|++.+.-++.+.|...++|+.+|+.+++++++|
T Consensus 9 ~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG 88 (462)
T COG1113 9 QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLG 88 (462)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhc
Confidence 3467889999999999999999998 467778888998888888999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHh--hhccccCchhHHH-HH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWP--TTWLRSLGILAYV-SA 175 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--l~~~~~l~~l~~~-s~ 175 (401)
++.++++++.+++.....+.+.++.++.+++.++++.+. +.+.+...++... +.-.|...++-+. +.
T Consensus 89 ~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~----------Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 89 PWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQ----------WVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987731 1333333333222 3334444443332 33
Q ss_pred HHHHHHHHHHH---HHHhhhccccC--------------------Cchhhhhhhhhhccccccccchhhhccccc-hhhH
Q 048146 176 GGVLASITLVA---CVLWVGAVDGV--------------------GLPTAVSLYTFCYCGHSVFPTLCNSMKDRR-QFSK 231 (401)
Q Consensus 176 ~~~~~~~~~~~---~~~~~~~~~~~--------------------~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 231 (401)
+-+..++..++ .++..+...+. ++..++-+.+|||.+.+.+-.-..|-|||+ ..+|
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipk 238 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPK 238 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHH
Confidence 33333222222 11122111110 166788899999999999999999999995 5789
Q ss_pred HHHHHHHHHHHHHHH-----HHhHHHhhhcccchhhhH--h--ccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhc
Q 048146 232 VLAACFIISTANYGS-----MAILGYLMYGDHLKSQVT--L--NLPIRKISSKLAIYTTLINPLTKYAVIITPIATALED 302 (401)
Q Consensus 232 ~~~~~~~i~~~~y~~-----~g~~gy~~fg~~~~~~il--~--~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~ 302 (401)
++.....-..++|+. +.+..+-.++++.++-+. . +.|..+ .+.++.......++.-=-.+...+.+.+
T Consensus 239 Ain~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa---~i~N~VVLtAa~S~~NSglystsRmL~~ 315 (462)
T COG1113 239 AINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAA---GIMNFVVLTAALSALNSGLYSTSRMLYS 315 (462)
T ss_pred HHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccc---cceeEEEeechhhcccccccccchHHHH
Confidence 998888888888875 344444444444333221 1 223222 1112111111122221122233333333
Q ss_pred cCCCC----------CCCC--chhhhHHHHHHHHHHHHhhcc--chhHHHHhhhhhhHHHHHHhhhhhhHHhhhcc
Q 048146 303 TPHLR----------KSRP--ISILVRTVLVISTVIVAITIP--FFGYVLAFTGSFLGVTVSILLPCLCYLRINKT 364 (401)
Q Consensus 303 ~~~~~----------~~~~--~~~~~~~~~~~~~~~~a~~~p--~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~ 364 (401)
+-.+. |+.. .-...+.+...+..++....| -++.+.+..+. +....+.+=.+.|+|.+|.
T Consensus 316 la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~--~~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 316 LAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGL--GLLFVWLMILLSQLKLRKA 389 (462)
T ss_pred HhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 32111 1111 134566667777777778888 34445554443 3455666777788888773
No 37
>PRK10836 lysine transporter; Provisional
Probab=99.60 E-value=1.9e-12 Score=129.03 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=149.6
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHH-HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPY-ALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~-~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~ 97 (401)
++.+|+.+.++.....+++++|+|++.+|. +.+++|.. .++.+++.+++....+..+.|...+.|+.....+.+++++
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~ 90 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYV 90 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Confidence 457788999999999999999999999996 56678876 7888999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHH
Q 048146 98 GCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGG 177 (401)
Q Consensus 98 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~ 177 (401)
|+..+++..+..++................++.+.+.. + ...+..+..++..-+. ..+.+..+.++.+.
T Consensus 91 g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~----~------~~~~~~~~~~~~~~lN-~~gv~~~~~~~~~~ 159 (489)
T PRK10836 91 EEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT----P------GWIWSALFLGVIFLLN-YISVRGFGEAEYWF 159 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----c------hHHHHHHHHHHHHHHH-HHcchhhhhhHHHH
Confidence 99999999988877543333322222222233332211 0 1112222222222222 33555444443332
Q ss_pred HHHHHHHHH------HHHhhhc-cc-----------c-C----C---chhhhhhhhhhccccccccchhhhcccc-chhh
Q 048146 178 VLASITLVA------CVLWVGA-VD-----------G-V----G---LPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFS 230 (401)
Q Consensus 178 ~~~~~~~~~------~~~~~~~-~~-----------~-~----~---~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~ 230 (401)
....+..++ .+...+. .. + . + +..+.....|+|.|.+.+....+|.||| |+.|
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 222221111 1111110 00 0 0 0 1223344569999999999999999999 6799
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 231 KVLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 231 ~~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
|++..+...+.++|+..........+
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999988665444443
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.59 E-value=1.1e-12 Score=131.10 Aligned_cols=231 Identities=14% Similarity=0.062 Sum_probs=154.8
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHH-HHhhcHHH--HHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYA-LSQGGWLS--LIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLA 96 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~-~~~~G~~g--ii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~ 96 (401)
++.+|+.+.++.....+++++|+|++..|.. .+++|..| ++.+++.++.....+..+.|.....|+.+......++.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~ 117 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV 117 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH
Confidence 4578889999999999999999999999875 55577543 35667778888888899999988888888889999999
Q ss_pred cccchhHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHH
Q 048146 97 FGCKGRAMVSILMYLE-LYFVAVEFLILEGDNLE-KLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVS 174 (401)
Q Consensus 97 ~G~~~~~~~~~~~~~~-~~g~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 174 (401)
+||+..++..+..+.. ..+.+..+....++++. .+.+....+ . . ....+.+....+...+. .++.+...+++
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~--~--~-~~~~i~~~~i~~~~~ln-~~Gvk~~~~~~ 191 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP--E--W-AIRLVAVLCVLLLTLVN-CLSVKWATRVQ 191 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--h--H-HHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence 9999988888765542 22334444455555542 233321111 0 0 01122222222222222 45777777777
Q ss_pred HHHHHHHHHHHHHHHhhh---cc-------ccC-----------Cchhhhhhhhhhccccccccchhhhcccc-chhhHH
Q 048146 175 AGGVLASITLVACVLWVG---AV-------DGV-----------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKV 232 (401)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~---~~-------~~~-----------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~ 232 (401)
.+.....+..++.++..+ .. +.. ++..++....|+|.|.+......+|+||| |+.||+
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrA 271 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIA 271 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHH
Confidence 666555443322221111 00 000 14456778899999999999999999999 679999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 233 LAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 233 ~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
+..+..++.++|++.........+
T Consensus 272 i~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 272 IIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998665544443
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.59 E-value=1.5e-12 Score=128.30 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=152.4
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHHH-HhhcH-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYAL-SQGGW-L-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLA 96 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~-~~~G~-~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~ 96 (401)
++.+|+.+.++.....++.++|+|++..|... +..|. . .++.+++.+++....+..+.|.....|+........++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 45778899999999999999999999999764 45663 3 667788888888889999999988888888878888899
Q ss_pred cccchhHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHH
Q 048146 97 FGCKGRAMVSILMY-LELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSA 175 (401)
Q Consensus 97 ~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 175 (401)
+||...++..+... .........+....++++..+.+.. .. .......+...+ +-..-.++.+...+++.
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----~~---~~~~~~~~~~~~-~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-----PL---LGKFIAAGLIIA-FMLLHLRSVEGGAAFQT 154 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hH---HHHHHHHHHHHH-HHHHHHhhhhHHHHHHH
Confidence 99999988888644 3333344556666666665443210 00 011122222222 22222456776667766
Q ss_pred HHHHHHHHHHHHHHhhh---ccc-----c-------C----Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHH
Q 048146 176 GGVLASITLVACVLWVG---AVD-----G-------V----GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAA 235 (401)
Q Consensus 176 ~~~~~~~~~~~~~~~~~---~~~-----~-------~----~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~ 235 (401)
+.....+..++.++..+ ... . . ++..++....|+|.|.+......+|+||| |+.+|++..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 65554443222111110 000 0 0 13345667799999999999999999999 578999999
Q ss_pred HHHHHHHHHHHHHhHHH
Q 048146 236 CFIISTANYGSMAILGY 252 (401)
Q Consensus 236 ~~~i~~~~y~~~g~~gy 252 (401)
+..++.++|++......
T Consensus 235 ~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 235 SCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998766443
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.59 E-value=5e-12 Score=125.81 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=154.2
Q ss_pred CCCchhHHHHHHHHHhhhhhhhchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCChHHHHHHhccc
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGILSIP-YALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANP-LIKTYPDIGDLAFGC 99 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gil~LP-~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~-~~~~y~~~~~~~~G~ 99 (401)
+|+.+.++.....++.++|+|++..| .+.+++|.. .+..+++.+++.......+.|.....| ....|.+.+++.+|+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 46789999999999999999998877 556678866 577788888999999999999998888 455899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
...++..+.+++.....+.......+..++.+.+... ...+..+..++.. +.-.++.|..++++.....
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIAIFYVFIV-IINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHH
Confidence 9999999999888877777777777777765433111 0122222222222 2234567776666654443
Q ss_pred HHHHHHHHH-----Hh-hh-c-c----------cc------------CCchhhhhhhhhhccccccccchhhhcccc-ch
Q 048146 180 ASITLVACV-----LW-VG-A-V----------DG------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQ 228 (401)
Q Consensus 180 ~~~~~~~~~-----~~-~~-~-~----------~~------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~ 228 (401)
..+..++.+ .. .. . . +. .++..++....|+|.|.+......+|.||| |+
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 322211111 11 00 0 0 00 013445666789999999999999999999 57
Q ss_pred hhHHHHHHHHHHHHHHHHHHhH
Q 048146 229 FSKVLAACFIISTANYGSMAIL 250 (401)
Q Consensus 229 ~~~~~~~~~~i~~~~y~~~g~~ 250 (401)
.||++..+..++.++|++....
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987544
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.58 E-value=7e-12 Score=123.00 Aligned_cols=225 Identities=15% Similarity=0.141 Sum_probs=162.1
Q ss_pred chhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHH
Q 048146 26 TTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLC-WYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAM 104 (401)
Q Consensus 26 ~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~-~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 104 (401)
.++++.....++.++|+|++..| ...+.|...++..++.+.+. ......+.|..++.|+.+...+.+++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 36889999999999999999999 77777766666666655555 67778888888778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccc-ccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHH-
Q 048146 105 VSILMYLELYFVAVEFLILEGDNLEKLFPN-FGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASI- 182 (401)
Q Consensus 105 ~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~- 182 (401)
..+...+........+.....+.+.+.+.. ..++ .. ......++...+...+. .+..|..++++.......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~i~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~i~ 153 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPDLNPS----PW-PQFLIAIILILLFTLLN-LLGIKLSGKIQNILTVIKIV 153 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCS----HH-HHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhccccccccc----cc-hheeeeecccccceEee-echhhhhhhhhhhhhhhhhh
Confidence 999999999888888888888888776642 1111 00 01111222222333333 5577777777766665555
Q ss_pred HHHHHHHhhhc-------cc-------c------CCchhhhhhhhhhccccccccchhhhccccchhhHHHHHHHHHHHH
Q 048146 183 TLVACVLWVGA-------VD-------G------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTA 242 (401)
Q Consensus 183 ~~~~~~~~~~~-------~~-------~------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~i~~~ 242 (401)
..++.++..+. .. . .....++....|+|.|.+......+|+|| |+.+|++..+..++.+
T Consensus 154 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i 232 (426)
T PF13520_consen 154 IPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAI 232 (426)
T ss_dssp HHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHH
T ss_pred hhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHH
Confidence 23222221110 00 0 01567788999999999999999999998 8999999999999999
Q ss_pred HHHHHHhHHHhhhccc
Q 048146 243 NYGSMAILGYLMYGDH 258 (401)
Q Consensus 243 ~y~~~g~~gy~~fg~~ 258 (401)
+|.+.........+++
T Consensus 233 ~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 233 IYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHHTTSTHC
T ss_pred HHhhhhheeeecccch
Confidence 9999987777766653
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.54 E-value=9.8e-12 Score=122.37 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=147.6
Q ss_pred HHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHHHH
Q 048146 35 GLNVVSGVGILSIPY-ALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLEL 113 (401)
Q Consensus 35 l~~~~iG~Gil~LP~-~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~ 113 (401)
.+++++|+|++..|. +.+++|...++..++.+++....+..+.|...+.|+.++..+.+++.+||+..++..+..++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 468899999998886 6778887788889999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHh---
Q 048146 114 YFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLW--- 190 (401)
Q Consensus 114 ~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~--- 190 (401)
...+.......+..++.+.+... ...+..+..++...+. .++.|..+.++.+.....+..++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPGIP----------IWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhccccCc----------HHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555555544432110 1122222222222222 446666666665554433332222111
Q ss_pred ---hhcc------------c-cC-------Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHHHHHHH
Q 048146 191 ---VGAV------------D-GV-------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIISTANYGS 246 (401)
Q Consensus 191 ---~~~~------------~-~~-------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~~~y~~ 246 (401)
.+.. + +. ++..++....|+|.|.+......+|+||| |+.+|++..+.....++|+.
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 1100 0 00 24567778899999999999999999999 56999999999999999998
Q ss_pred HHhHHHhh
Q 048146 247 MAILGYLM 254 (401)
Q Consensus 247 ~g~~gy~~ 254 (401)
..+.....
T Consensus 232 ~~~~~~~~ 239 (446)
T PRK10197 232 SIFVVVAL 239 (446)
T ss_pred HHHHHhee
Confidence 76654333
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.43 E-value=2.6e-10 Score=113.13 Aligned_cols=235 Identities=16% Similarity=0.180 Sum_probs=166.8
Q ss_pred ccCCCCchhHH-HHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 20 QQRSEGTTFLR-TCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 20 ~~~~~~~s~~~-~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
++++++.+.++ ......++++|.|++.+|......+....+.+++.+++....+..+.|..++.|+.+.+.+.+++.+|
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 87 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALG 87 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcC
Confidence 45666777777 89999999999999999988877652233335666666666678888888888888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
|+..++..+..++.............++.+..+++......... . .......+...+.. +.-.+..+...++.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~ln~~G~~~~~~~~~~~~ 164 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGP-L-LIILIALALIALLT-LLNLRGIKASAKINSIIT 164 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCc-h-HHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHH
Confidence 99999999999999998888888888887777776432000000 0 01111112222222 222557777777666666
Q ss_pred HHHHHHHHHHHhhhc----cc---cC-----------Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHH
Q 048146 179 LASITLVACVLWVGA----VD---GV-----------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFII 239 (401)
Q Consensus 179 ~~~~~~~~~~~~~~~----~~---~~-----------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i 239 (401)
...+...+.+..... .+ .. .+..++....++|.|.+...+..+|+||| |+.+|++..+...
T Consensus 165 ~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~ 244 (466)
T COG0531 165 ILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLI 244 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 555554443332211 10 00 04456777899999999999999999999 6789999999999
Q ss_pred HHHHHHHHHhHHHhhhcc
Q 048146 240 STANYGSMAILGYLMYGD 257 (401)
Q Consensus 240 ~~~~y~~~g~~gy~~fg~ 257 (401)
+.++|+..........++
T Consensus 245 ~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 245 VLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHhCccH
Confidence 999999998887777765
No 44
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.41 E-value=1.5e-10 Score=109.04 Aligned_cols=275 Identities=15% Similarity=0.164 Sum_probs=192.5
Q ss_pred CchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHH
Q 048146 25 GTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAM 104 (401)
Q Consensus 25 ~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 104 (401)
|.|.+|....+..+.+|+|++.+|....+.+-.|.+..++.+.......++..+..+++ +.+|..|+.++.+||+.+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~~~-p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLKRF-PGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHhCcHHHHH
Confidence 46889999999999999999999998765430244444445555555555666666666 66999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHH
Q 048146 105 VSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITL 184 (401)
Q Consensus 105 ~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 184 (401)
......++.+..........+|.++...-... ..+...+..++..-....++++.+.+.+.+-.......
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T----------P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~ 149 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPET----------PIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLIL 149 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888877542221 12344444445555555789999998776655555544
Q ss_pred HHHHHhhhcccc-------------CCchhhhhhhhhhccccccccchhhhccccchhhHHHHHHHHHHHHHHHHHHhHH
Q 048146 185 VACVLWVGAVDG-------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILG 251 (401)
Q Consensus 185 ~~~~~~~~~~~~-------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~i~~~~y~~~g~~g 251 (401)
.+.+......+. .+...+.....+.|.+.....-+.+..|||+|..|....+..++.++|...-+..
T Consensus 150 ~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (320)
T PF03845_consen 150 LLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFIT 229 (320)
T ss_pred HHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332221 1255667777888888888888999999999999999999999999999999999
Q ss_pred HhhhcccchhhhH-------hccCCcch---hhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCC
Q 048146 252 YLMYGDHLKSQVT-------LNLPIRKI---SSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSR 310 (401)
Q Consensus 252 y~~fg~~~~~~il-------~~~~~~~~---~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 310 (401)
...||.+..++.. ...+-.+. .-.+.................+...+.+.+.++.++.|
T Consensus 230 i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 298 (320)
T PF03845_consen 230 IGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDYK 298 (320)
T ss_pred HHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999965433211 11111111 11122234445566677778888888888888654443
No 45
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.39 E-value=1.6e-09 Score=108.05 Aligned_cols=235 Identities=9% Similarity=-0.033 Sum_probs=141.5
Q ss_pred ccCCCCchhHHHHHHHHHhhhh--hhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSG--VGIL-SIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDL 95 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG--~Gil-~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~ 95 (401)
++.+|+.+.++.+...++. +| .|+. ..+.+..+.|.. .+...++.+++....+..+.|...+.|+..+..+.+++
T Consensus 8 ~~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~ 86 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAK 86 (482)
T ss_pred ceeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 3567778999988888884 44 6664 455677788886 67788888999999999999999999999999999999
Q ss_pred hccc----chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccc-chHHHHHHHHHHHhhhccccCchh
Q 048146 96 AFGC----KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGG-KQGFVLLTALIIWPTTWLRSLGIL 170 (401)
Q Consensus 96 ~~G~----~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~l~~l 170 (401)
.+|+ ...++..+..++.....+.+.....++.+........+. ..+..+. ......+......-+.-.+..|..
T Consensus 87 ~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 87 LAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred hcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 9875 446677777776666666655555566655443211110 0000111 111111111111222223455555
Q ss_pred HHHHHHHHHHHHHHHH-H-HH--hhhc-c-c-----------cC-C-------chhhhhhhhhhccccccccchhhhccc
Q 048146 171 AYVSAGGVLASITLVA-C-VL--WVGA-V-D-----------GV-G-------LPTAVSLYTFCYCGHSVFPTLCNSMKD 225 (401)
Q Consensus 171 ~~~s~~~~~~~~~~~~-~-~~--~~~~-~-~-----------~~-~-------~~~~~~~~~faf~~~~~~~~i~~~m~~ 225 (401)
..++.+.....+...+ . +. .... . + .. + ...++....|+|.|.+......+|+||
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~kn 245 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIEN 245 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCC
Confidence 5555443333222211 1 11 1100 0 0 00 1 222344566999999999999999999
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 226 R-RQFSKVLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 226 p-~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
| |+.||++..+..+..+++++..+......+
T Consensus 246 P~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 246 PEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9 679999999988877665544443333333
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.39 E-value=3e-10 Score=109.37 Aligned_cols=220 Identities=13% Similarity=0.139 Sum_probs=168.5
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGIL-SIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil-~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
+.||+...++..++.++..||+|.+ +.-.+.+++|.. .++...+.+.+.+..+..+.|.+...|...++...+.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 4678999999999999999999994 788999999999 77889999999999999999999999988889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhc--cccCchhHHH-HH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTW--LRSLGILAYV-SA 175 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~-s~ 175 (401)
+-.++...+.+++....++...++..+..++-+.+..-+ ...|..++.++++.+.+ .|...+.-+. |.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~---------~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVP---------PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCC---------hHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 999999999999999999999999999999988855411 12555555444444433 4454433332 33
Q ss_pred HHHHHHHHHHH---HHHhhhccc----------cC--------Cchhhhhhhhhhccccccccchhhhcccc-chhhHHH
Q 048146 176 GGVLASITLVA---CVLWVGAVD----------GV--------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVL 233 (401)
Q Consensus 176 ~~~~~~~~~~~---~~~~~~~~~----------~~--------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~ 233 (401)
+-+++++..++ +++..+..+ ++ ++...+-+..|+|.|.+.+--...|-+|| |..||++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 33333332222 111111111 11 15566778889999999999999999999 5689999
Q ss_pred HHHHHHHHHHHHHHHh
Q 048146 234 AACFIISTANYGSMAI 249 (401)
Q Consensus 234 ~~~~~i~~~~y~~~g~ 249 (401)
.....-..++|++--+
T Consensus 272 k~vfwRIl~FYi~si~ 287 (541)
T COG0833 272 KQVFWRILLFYILSIF 287 (541)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987433
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.36 E-value=7.7e-09 Score=102.81 Aligned_cols=237 Identities=15% Similarity=0.059 Sum_probs=150.3
Q ss_pred ccCCCCchhHHHHHHHHHhh-hhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 048146 20 QQRSEGTTFLRTCLNGLNVV-SGVGILSIPY-ALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~-iG~Gil~LP~-~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~ 97 (401)
++-+|+.+.++.+...++.+ +|+|+...|. +..++|...+..+++.++.....+..+.|...+.|+.....+.+++.+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 45778899999999999875 8999988775 555666655666777888888888899999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc--cccccc-ccc--chHHHHHHHHHHHhhhccccCchhHH
Q 048146 98 GCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGF--IISGLK-IGG--KQGFVLLTALIIWPTTWLRSLGILAY 172 (401)
Q Consensus 98 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~--~~~~~~-~~~--~~~~~~~~~~~~~pl~~~~~l~~l~~ 172 (401)
||+..++..+..++................+..+.+.... ....+. .+. +.....+..++..-+.-.+..|...+
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999988876554444444444444333221110 000000 000 11121111222222222456666666
Q ss_pred HHHHHHHHHHHHHHHHHhhh---ccc--------c-----CC----chhhhhhhhhhccccccccchhhhcccc-chhhH
Q 048146 173 VSAGGVLASITLVACVLWVG---AVD--------G-----VG----LPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSK 231 (401)
Q Consensus 173 ~s~~~~~~~~~~~~~~~~~~---~~~--------~-----~~----~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~ 231 (401)
++.......+..++.++... ..+ . .+ +..+.....|+|.|.+......+|+||| |+.||
T Consensus 169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr 248 (475)
T TIGR03428 169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPR 248 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhH
Confidence 66555444332222211111 010 0 01 2234445679999999999999999999 67999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 232 VLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 232 ~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
++..+..+..++|..+-+......+
T Consensus 249 ai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 249 TILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999988877766555444444
No 48
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.33 E-value=6.6e-11 Score=117.29 Aligned_cols=338 Identities=13% Similarity=0.107 Sum_probs=213.6
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CChHHHHHHh
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGIL-SIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLI-KTYPDIGDLA 96 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil-~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~-~~y~~~~~~~ 96 (401)
.+-+|+.+.++..+.-+++++|+|++ ....+.++.|.. -++..++.+.....++..+.|...+.|.. .++...+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 46789999999999999999999996 567888888888 67778888899999999999999998885 8899999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---------ccccccccccccccchHHHHHHHHHHHhhhccccC
Q 048146 97 FGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLF---------PNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSL 167 (401)
Q Consensus 97 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 167 (401)
.|+-+.+++.+.+++.....+.+.....+.+++.+. +..+.. .+ . .-.+..+..+.++..-..-+.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~--~~-~--~~fla~~v~in~~gv~~~ge~ 180 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPG--GW-I--PDFLAFILIINLFGVLAYGEV 180 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCC--cc-H--HHHHHHHHHHHHHHHhhccce
Confidence 999999999999999999999999999999999886 111100 00 0 011112222222222222234
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhc-ccc---------------------CCchhhhhhhhhhccccccccchhhhccc
Q 048146 168 GILAYVSAGGVLASITLVACVLWVGA-VDG---------------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKD 225 (401)
Q Consensus 168 ~~l~~~s~~~~~~~~~~~~~~~~~~~-~~~---------------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 225 (401)
+.......+-....+.+...++..+. ..+ .++...+.+..|+|.|.+.+-...+|-||
T Consensus 181 ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN 260 (554)
T KOG1286|consen 181 EFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN 260 (554)
T ss_pred eehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 44333333322222332222332221 111 12667888999999999999999999999
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHHhHHHhhhc--cc-chhhh--------HhccCCcchhhHHHHHHHHHhhhhhhhhhH
Q 048146 226 R-RQFSKVLAACFIISTANYGSMAILGYLMYG--DH-LKSQV--------TLNLPIRKISSKLAIYTTLINPLTKYAVII 293 (401)
Q Consensus 226 p-~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg--~~-~~~~i--------l~~~~~~~~~~~i~~~~~~i~~~~~~p~~~ 293 (401)
| |+.|+++..+...++++|++..+.--+.-. |. ..++. -.+.+..+....+.....++.++++---..
T Consensus 261 P~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~ 340 (554)
T KOG1286|consen 261 PRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSL 340 (554)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHh
Confidence 9 679999999999999999998765544322 20 11111 111122222112444455555555544455
Q ss_pred hhHHHHHhccCCCC---------CCCCchhhhHHHHHHHHHHHHhhcc-----chhHHHHhhhhhhHHHHHHhhhhhhHH
Q 048146 294 TPIATALEDTPHLR---------KSRPISILVRTVLVISTVIVAITIP-----FFGYVLAFTGSFLGVTVSILLPCLCYL 359 (401)
Q Consensus 294 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~p-----~~~~i~~l~G~~~~~~~~~ilP~~~~l 359 (401)
++.-+.+...-+.. +++..-+.-.....+...+.++... .++.++++.|- +..+.+..=++.|+
T Consensus 341 y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i 418 (554)
T KOG1286|consen 341 YAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHL 418 (554)
T ss_pred HHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHe
Confidence 55545444432211 2222223333333334444444443 25777777663 45666666666776
Q ss_pred hhhcc
Q 048146 360 RINKT 364 (401)
Q Consensus 360 ~~~~~ 364 (401)
+.++.
T Consensus 419 ~~R~a 423 (554)
T KOG1286|consen 419 RFRYA 423 (554)
T ss_pred eeeec
Confidence 65443
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.31 E-value=8.7e-09 Score=102.99 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=136.8
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCC-CCChHHHHHHhccc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLC-WYTGLLLRRCMDANPL-IKTYPDIGDLAFGC 99 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~-~~s~~~l~~~~~~~~~-~~~y~~~~~~~~G~ 99 (401)
.+|+.+.++.....+++++|.+ .+|.++++.|..+++...+.+++. ...+..+.|.....|+ .+.-.+..++.+||
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 4678999999999999999976 579888888887666666666554 3456778898888886 68889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcccccccccc-cccccchHHHHHH--HHHHHhhhccccCchhHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILE-GDNLEKLFPNFGFIISG-LKIGGKQGFVLLT--ALIIWPTTWLRSLGILAYVSA 175 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~pl~~~~~l~~l~~~s~ 175 (401)
+++++..+..+.............. .......+......... ...+......++. .+...-..-.|..+..++++.
T Consensus 83 ~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~ 162 (496)
T PRK15238 83 KFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTS 162 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9988776654443332221111000 00001111111000000 0000111111111 111222333677888887776
Q ss_pred HHHHHHHH-----HHHH-HHh-h-hcc--c-----------cC------Cchhhhhhhhhhccccccccchhhhcccc-c
Q 048146 176 GGVLASIT-----LVAC-VLW-V-GAV--D-----------GV------GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-R 227 (401)
Q Consensus 176 ~~~~~~~~-----~~~~-~~~-~-~~~--~-----------~~------~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~ 227 (401)
++....+. .++. .++ . ... + ++ ++..++....|+|.|.+......+|+||| |
T Consensus 163 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~ 242 (496)
T PRK15238 163 IGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEK 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence 54433221 1111 111 1 100 0 01 13334566789999999999999999999 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHH
Q 048146 228 QFSKVLAACFIISTANYGSMAILG 251 (401)
Q Consensus 228 ~~~~~~~~~~~i~~~~y~~~g~~g 251 (401)
+.||++..+...+.++|.+..+..
T Consensus 243 ~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 243 NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999865444
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.28 E-value=1.7e-08 Score=100.38 Aligned_cols=226 Identities=11% Similarity=0.109 Sum_probs=131.1
Q ss_pred CchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCChHHHHHHhcccchhH
Q 048146 25 GTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCW-YTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRA 103 (401)
Q Consensus 25 ~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~-~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~ 103 (401)
+.+.+.-.++.+.++++ +..+|.+ ++.|...++.+++.+++.. -.+....|.....|+.+...+.+++.+|+++++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 46777777777777766 4456755 5788766666666666554 467788888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHH---HHHHhhhccccCchhHHHHHHHH-H
Q 048146 104 MVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTA---LIIWPTTWLRSLGILAYVSAGGV-L 179 (401)
Q Consensus 104 ~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pl~~~~~l~~l~~~s~~~~-~ 179 (401)
...+..++........-....+..+....+..... ... ....+...... ...+-..-.++.|..++++.+.. .
T Consensus 79 ~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~ 155 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ESL--AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIV 155 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-ccc--ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 99888877653322221112222221111110000 000 01112211111 11222233567776666654432 1
Q ss_pred HHHHH-----HHHHHhhhccc----c-------CC-----chhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHH
Q 048146 180 ASITL-----VACVLWVGAVD----G-------VG-----LPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACF 237 (401)
Q Consensus 180 ~~~~~-----~~~~~~~~~~~----~-------~~-----~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~ 237 (401)
..++. ++...+..... + ++ .........|+|.|.+......+|+||| |+.+|++..+.
T Consensus 156 ~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~ 235 (474)
T TIGR03813 156 GTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAA 235 (474)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHH
Confidence 11111 11111110000 0 00 0112234568999999999999999999 67999999999
Q ss_pred HHHHHHHHHHHhHHHhhhc
Q 048146 238 IISTANYGSMAILGYLMYG 256 (401)
Q Consensus 238 ~i~~~~y~~~g~~gy~~fg 256 (401)
.++.++|++..+......+
T Consensus 236 ~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 236 LGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999987665544444
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.21 E-value=4.2e-08 Score=98.11 Aligned_cols=220 Identities=9% Similarity=0.061 Sum_probs=125.5
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCChHHHHHHhccc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVL-CWYTGLLLRRCMDANP-LIKTYPDIGDLAFGC 99 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~-~~~s~~~l~~~~~~~~-~~~~y~~~~~~~~G~ 99 (401)
.+++.+.++.++..+..+.+ +..+| .+++.|+-.+...++.+++ ..-.+....|.....| +.+...+.+++.+|+
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~ 78 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA--VYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGE 78 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCc
Confidence 34668999988888888864 56888 4677786555554444443 3446677888777654 667888889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccc-hHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGK-QGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
+++++..+..++......................... ...+.. .....+..+...-+...+..+...+++.++.
T Consensus 79 ~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~ 153 (507)
T TIGR00910 79 RFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPA-----LNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGF 153 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----hccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9998877777765543222221111111111111100 001111 1111111222222333556666666554433
Q ss_pred HHH-HHHHHHH-----Hhhhcccc-----------C-----Cchhhhhhhhhhccccccccchhhhcccc-chhhHHHHH
Q 048146 179 LAS-ITLVACV-----LWVGAVDG-----------V-----GLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAA 235 (401)
Q Consensus 179 ~~~-~~~~~~~-----~~~~~~~~-----------~-----~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~ 235 (401)
... ....+.+ .+....+. + +....+....|+|.|.+......+|+||| |+++|++..
T Consensus 154 ~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~ 233 (507)
T TIGR00910 154 FAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMIL 233 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHH
Confidence 221 1111111 11110000 0 11223345688999999999999999999 579999999
Q ss_pred HHHHHHHHHHHHHh
Q 048146 236 CFIISTANYGSMAI 249 (401)
Q Consensus 236 ~~~i~~~~y~~~g~ 249 (401)
+..+..++|.+..+
T Consensus 234 ~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 234 LMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999976444
No 52
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.93 E-value=1.9e-08 Score=84.35 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=138.5
Q ss_pred CchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh---------------------
Q 048146 25 GTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA--------------------- 82 (401)
Q Consensus 25 ~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~--------------------- 82 (401)
..|-.-......|-++|+|.|+||.+|+.+||+ ++.++.+.++.++.+.-..+++...
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 345555677889999999999999999999999 9999999999999998887775432
Q ss_pred -------------------CC----------------CCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048146 83 -------------------NP----------------LIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDN 127 (401)
Q Consensus 83 -------------------~~----------------~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~ 127 (401)
.| +.-..++++...+.|.+-.+..+++++++||-...|....--.
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 00 1112367788889999999999999999999999998877666
Q ss_pred hhhhcccccc------ccccccc-------------ccchHHHH-HHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHH
Q 048146 128 LEKLFPNFGF------IISGLKI-------------GGKQGFVL-LTALIIWPTTWLRSLGILAYVSAGGVLASITLVAC 187 (401)
Q Consensus 128 ~~~~~~~~~~------~~~~~~~-------------~~~~~~~~-~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~ 187 (401)
..++...... +.+.+.. +..+.+.+ ...++.+|+.+. ++++.+.++.+....-......
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~ 249 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFIL 249 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccc
Confidence 5554432111 1111111 11233433 445666788754 7888888887766655443332
Q ss_pred HHhhh---cc-cc----------CCchhhhhhhhhhccccccccchhhhcccc
Q 048146 188 VLWVG---AV-DG----------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR 226 (401)
Q Consensus 188 ~~~~~---~~-~~----------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 226 (401)
.+..+ .. +. .++-..++..+|+|.+|.+.|.....++.+
T Consensus 250 g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 250 GISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 22221 11 11 124567889999999999999998888765
No 53
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.90 E-value=1.3e-08 Score=101.30 Aligned_cols=220 Identities=13% Similarity=0.129 Sum_probs=152.0
Q ss_pred HHHHhhhhhhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHH
Q 048146 34 NGLNVVSGVGIL-SIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYL 111 (401)
Q Consensus 34 ~l~~~~iG~Gil-~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~ 111 (401)
..+++++|+|++ ..+.+..+.|.. .++..++.+++....+..+.|..++.|+..++.+.+++.+|+..+....+..++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 456788999985 577888999987 778889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhhh--cccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHH
Q 048146 112 ELYFVAVEFLILEGDNLEKL--FPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVL 189 (401)
Q Consensus 112 ~~~g~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 189 (401)
.............+..++.+ .++.... +.... .+..+..+++..+. ..+.+....+........+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPST---WVWGI--LIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhcccccccccccc---ccccc--hhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhHhhhhh
Confidence 88777777777777666655 3322210 00000 12233333333333 23444444433322222222111111
Q ss_pred hhh-----c----ccc-------------------------CCchhhhhhhhhhccccccccchhhhcccc-chhhHHHH
Q 048146 190 WVG-----A----VDG-------------------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLA 234 (401)
Q Consensus 190 ~~~-----~----~~~-------------------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~ 234 (401)
..+ . .+. .++..++....++|.|.+......+|.||| |+.||++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 0 000 115677888999999999999999999999 57999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhcccc
Q 048146 235 ACFIISTANYGSMAILGYLMYGDHL 259 (401)
Q Consensus 235 ~~~~i~~~~y~~~g~~gy~~fg~~~ 259 (401)
.+.....++|+......-...+.+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999998776666666443
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.84 E-value=4.5e-06 Score=80.85 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=130.6
Q ss_pred cCCCCchhHHHHHHH---HHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 048146 21 QRSEGTTFLRTCLNG---LNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLA 96 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l---~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~ 96 (401)
+-+|.-+.++.+..- .+..-|.- -++++.....|.. -.-.+++.++.....+.-+.|.+...|......==+.+.
T Consensus 45 ef~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~l 123 (550)
T KOG1289|consen 45 ELKREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVL 123 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHh
Confidence 344555555544333 33332211 3566667767765 444577778888888889999888888777766555566
Q ss_pred cccchhHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHH-HHHHHHHHhhhccccCchhH
Q 048146 97 FGCKGRAMVSILMY----LELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFV-LLTALIIWPTTWLRSLGILA 171 (401)
Q Consensus 97 ~G~~~~~~~~~~~~----~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pl~~~~~l~~l~ 171 (401)
-+|+++.+..+... +-+.....+-....++.+.....-..+ ++..+....+. .....+..-+.-...-|.++
T Consensus 124 ap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np---~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~ 200 (550)
T KOG1289|consen 124 APPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNP---NYEPTNYHQFGVFEAILFVHGLLNSLPTRVLA 200 (550)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCC---CCcccceEeehHHHHHHHHHHHHhcCCcHHHH
Confidence 66666555444333 222222212222222222222222211 11111111222 11222222222233456777
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----ccc-----cC----------C-------chhhhhhhhhhccccccccchhhhccc
Q 048146 172 YVSAGGVLASITLVACVLWVG----AVD-----GV----------G-------LPTAVSLYTFCYCGHSVFPTLCNSMKD 225 (401)
Q Consensus 172 ~~s~~~~~~~~~~~~~~~~~~----~~~-----~~----------~-------~~~~~~~~~faf~~~~~~~~i~~~m~~ 225 (401)
+++.+++...++..+...+.. ..+ +. + +..++-.-.+.+.|......+.+|-||
T Consensus 201 ~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~n 280 (550)
T KOG1289|consen 201 RINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKN 280 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcc
Confidence 777776666555433322211 010 10 0 344566777888999999999999999
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHHhHHHhhhccc
Q 048146 226 R-RQFSKVLAACFIISTANYGSMAILGYLMYGDH 258 (401)
Q Consensus 226 p-~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~ 258 (401)
+ ++.||++..+..+..++=..+-+.-...-+|+
T Consensus 281 Ask~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 281 ASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9 67899999999999988888777777777753
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.74 E-value=6.2e-06 Score=74.93 Aligned_cols=207 Identities=18% Similarity=0.116 Sum_probs=135.5
Q ss_pred hHHHHHHHHHhhhhhhhchhHH---HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHH
Q 048146 28 FLRTCLNGLNVVSGVGILSIPY---ALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAM 104 (401)
Q Consensus 28 ~~~~~~~l~~~~iG~Gil~LP~---~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 104 (401)
..+..+-.+++++|+|.=+=-- -|..-|+-|+...++++++-..++....+..++. +.++|.|.-+..+||+...+
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f-~a~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKF-NATSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHhhHHHHHH
Confidence 4556777888999999755332 2445666699999999999999999999998886 88999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHH-HHHHHHHHhhhccccCchhHHHHHHHHHHHHH
Q 048146 105 VSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFV-LLTALIIWPTTWLRSLGILAYVSAGGVLASIT 183 (401)
Q Consensus 105 ~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 183 (401)
.+....++.++.++.-....++.+++.+.-. .++. +++.+++..+.++++.+.+-.+..+-+.....
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~~~lP------------~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi 151 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEMFGLP------------YWIGALIIILLVLILLFLGRVEGIITVNGIITPFLII 151 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhCcc------------HHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHH
Confidence 9999999999999998888887887766422 1333 34444444455566677666665543333222
Q ss_pred HHHHHHh-hhc---cc--------cCCc-hhhhhhhhhhc-cccccccchhhhccccchhhHHHHHHHHHHHHHHHHH
Q 048146 184 LVACVLW-VGA---VD--------GVGL-PTAVSLYTFCY-CGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSM 247 (401)
Q Consensus 184 ~~~~~~~-~~~---~~--------~~~~-~~~~~~~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~~~~i~~~~y~~~ 247 (401)
....+.. +.. .+ ..++ ..+.+-..+.. .+.....++-+||++|+...+....+-.+.+++-...
T Consensus 152 ~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~ 229 (349)
T COG3949 152 ILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLI 229 (349)
T ss_pred HHHHHHHHHHHhhccchhhhcCCcCCChHHHHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHH
Confidence 2111111 111 00 0112 22232222222 2344556777999999877766655555555544443
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.61 E-value=5.2e-05 Score=74.72 Aligned_cols=329 Identities=12% Similarity=0.012 Sum_probs=175.5
Q ss_pred CCCchhHHHHHHHHHhhhhhhhchhHHHHHhh--cHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGILSIPYALSQG--GWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~--G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
+|+.+.++-...-.+..+...-+......... ++- +++..++...+...-.........+ ..-++.-++|..||+
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r--~Gl~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAK--YGLPFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH--hCCCcchhhhhhhhh
Confidence 33346666655555555554444444333333 333 5555555544444444444454444 235668889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc--cc-cchHHHHHHHHHHHhhhccccCchhHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLK--IG-GKQGFVLLTALIIWPTTWLRSLGILAYVSAG 176 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 176 (401)
++..+..++..+...|....-....++.+..+++...+...... .+ ......++...+..++......+........
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~ 168 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWL 168 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999988988888777665432210000 00 0112233445555554445455555555554
Q ss_pred HHHHHHHHHHHHHhhhc-----cc---c------CC----chhhhhhhh-hhccccccccchhhhccccchhhHHHHHHH
Q 048146 177 GVLASITLVACVLWVGA-----VD---G------VG----LPTAVSLYT-FCYCGHSVFPTLCNSMKDRRQFSKVLAACF 237 (401)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-----~~---~------~~----~~~~~~~~~-faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 237 (401)
+...........++... .+ . .. +..++...+ +.-..-.+.+...+.+|+|++-.+....++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~ 248 (442)
T TIGR00800 169 AVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLAL 248 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHH
Confidence 44443333222222110 00 0 00 222222222 222445678999999999988777788888
Q ss_pred HHHHHHHHHHHhHHHhh----hcccchh--hhHhccCCcchhh--H---HHHHHHHH-hhhhhhhhhHhhHHHHHhccCC
Q 048146 238 IISTANYGSMAILGYLM----YGDHLKS--QVTLNLPIRKISS--K---LAIYTTLI-NPLTKYAVIITPIATALEDTPH 305 (401)
Q Consensus 238 ~i~~~~y~~~g~~gy~~----fg~~~~~--~il~~~~~~~~~~--~---i~~~~~~i-~~~~~~p~~~~~~~~~~~~~~~ 305 (401)
.........+|+.+... +|+...+ +....+....... . ...+...+ ...+......++.-..+.+.++
T Consensus 249 ~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~ 328 (442)
T TIGR00800 249 PGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLP 328 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCc
Confidence 88888888888888776 7765333 2333333221110 0 01111111 1223444556666666666665
Q ss_pred CCCCCCchhhhHHHHHHHHHHHH-----hhccchhHHHHhhhhhhHHHHHHhhhhh
Q 048146 306 LRKSRPISILVRTVLVISTVIVA-----ITIPFFGYVLAFTGSFLGVTVSILLPCL 356 (401)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~a-----~~~p~~~~i~~l~G~~~~~~~~~ilP~~ 356 (401)
+.. +.+|. ..+..++.++++ -+.+.+.+++++.|....+.....+==.
T Consensus 329 ~~~-~~~r~--~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l~Dy 381 (442)
T TIGR00800 329 KYI-KIKRG--SLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMIADY 381 (442)
T ss_pred Ccc-ccchH--HHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 422 22231 111222222222 1223566788888888776665554443
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.51 E-value=0.00013 Score=70.33 Aligned_cols=253 Identities=15% Similarity=0.082 Sum_probs=146.9
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCch
Q 048146 90 PDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGI 169 (401)
Q Consensus 90 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 169 (401)
..+++..||.++.++..+.+.+.+.|....-.+..++..-+. ++. +..++.++..+++.-.+.. ..+.
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~----------~~~~~ili~g~l~~l~~if-G~r~ 151 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGL----------PVWAGILIIGVLMTLVTIF-GYRA 151 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCC----------cHHHHHHHHHHHHHHHHHH-hHHH
Confidence 566788899999999999999999999998888888762111 111 1224444455455444432 4444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc--c--------cCC----chhhhhhhhhhc-cccccccchhhhccccc--hhhHH
Q 048146 170 LAYVSAGGVLASITLVACVLWVGAV--D--------GVG----LPTAVSLYTFCY-CGHSVFPTLCNSMKDRR--QFSKV 232 (401)
Q Consensus 170 l~~~s~~~~~~~~~~~~~~~~~~~~--~--------~~~----~~~~~~~~~faf-~~~~~~~~i~~~m~~p~--~~~~~ 232 (401)
+..++..+............+.... + ++. +..+++...=.+ ..-+....+.+.+|+|+ |.-..
T Consensus 152 l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~ 231 (442)
T COG1457 152 LHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLA 231 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHH
Confidence 4444444444333333332222211 0 011 223333222222 34456688889999988 77777
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhcccc-hhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCCC
Q 048146 233 LAACFIISTANYGSMAILGYLMYGDHL-KSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRP 311 (401)
Q Consensus 233 ~~~~~~i~~~~y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 311 (401)
...+......+-..+|.....+-|+.. ..+....+.. ....+.+...++.+++--...++.--.+.+.... -+|.
T Consensus 232 ~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~-l~k~ 307 (442)
T COG1457 232 AVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK-LSKV 307 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh-hhhH
Confidence 788888888888899999999988776 3333333432 2234445556666677777777776666666542 1222
Q ss_pred chhhhHHHHHHHHHHHHh----hccchhHHHHhhhhhhHHHHHHhhhhhhHHh
Q 048146 312 ISILVRTVLVISTVIVAI----TIPFFGYVLAFTGSFLGVTVSILLPCLCYLR 360 (401)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~----~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~ 360 (401)
.+.....+. ..+++++ +..+++.++.+.|+.........+--.+..|
T Consensus 308 ~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 308 TRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333322222 2333333 3567888888888876555544444444444
No 58
>PRK11375 allantoin permease; Provisional
Probab=98.47 E-value=0.00023 Score=70.67 Aligned_cols=291 Identities=11% Similarity=0.077 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhccc--
Q 048146 58 SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMY-LELYFVAVEFLILEGDNLEKLFPN-- 134 (401)
Q Consensus 58 gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~~~~~~~~-- 134 (401)
+++..++...+...-+........+ ..-++.-+++..||++|.++..+... +...+.-..-....++.+..++..
T Consensus 62 ai~ai~lG~~i~~~~~~l~g~~G~~--~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~ 139 (484)
T PRK11375 62 IMLAIILSAFFIAAVMVLNGAAGSK--YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIW 139 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc--cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555444444444444444444 34678899999999999888888774 455555555555566665544322
Q ss_pred --ccccccc---cccccchHH-HHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHH-hh----hc---cc--cCC
Q 048146 135 --FGFIISG---LKIGGKQGF-VLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVL-WV----GA---VD--GVG 198 (401)
Q Consensus 135 --~~~~~~~---~~~~~~~~~-~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~-~~----~~---~~--~~~ 198 (401)
+....+. ...+..... .++..++..+.. ....+.++++..++........+.+. +. +. .+ +.+
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (484)
T PRK11375 140 PGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSG 218 (484)
T ss_pred ccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCccc
Confidence 2111010 111111122 234456666665 45666676666665555443322222 11 10 00 000
Q ss_pred ----------chhhhhhhhhhcc-ccccccchhhhccccchhhHHHHHHHHHHHHHHHHHHhHH----Hhhhcccchh--
Q 048146 199 ----------LPTAVSLYTFCYC-GHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILG----YLMYGDHLKS-- 261 (401)
Q Consensus 199 ----------~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~~~~i~~~~y~~~g~~g----y~~fg~~~~~-- 261 (401)
+..++...+=++. ...+.+...+..|+||+..+....+..+...+...+|+.. ...+|+...+
T Consensus 219 ~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~ 298 (484)
T PRK11375 219 IQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL 298 (484)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH
Confidence 1222222222333 3457899999999998877777777777776665555443 4466654322
Q ss_pred hhHhccCCcchhhHHHHHHHHHhhhhhh-hhhHhhHHHHHhccCCCCCCCCchhhhHHHHHHHHHHHHhh--c---cchh
Q 048146 262 QVTLNLPIRKISSKLAIYTTLINPLTKY-AVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAIT--I---PFFG 335 (401)
Q Consensus 262 ~il~~~~~~~~~~~i~~~~~~i~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~---p~~~ 335 (401)
+++....+ .....++.+..+++.+++- ....++.-..+.+.++++.++++ . ..+.-++.++++.. . ..+.
T Consensus 299 ~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~~~-~--~~i~~iig~~~~pw~~~~~~~~f~ 374 (484)
T PRK11375 299 DIVQRWDS-LFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLTYKN-G--VLIASIISLLICPWKLMENQDSIY 374 (484)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccchhh-H--HHHHHHHHHHhccHHHhccHHHHH
Confidence 33333322 1122223333444444442 34667777777777764422222 1 11111222223322 1 2388
Q ss_pred HHHHhhhhhhHHHHHHhhhh
Q 048146 336 YVLAFTGSFLGVTVSILLPC 355 (401)
Q Consensus 336 ~i~~l~G~~~~~~~~~ilP~ 355 (401)
+++++.|++.++..+.++-=
T Consensus 375 ~FL~~lg~~l~Pi~gImi~D 394 (484)
T PRK11375 375 LFLDIIGGMLGPVIGVMMAH 394 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88888888877766655544
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.44 E-value=0.00052 Score=66.28 Aligned_cols=280 Identities=12% Similarity=0.043 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 048146 58 SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGF 137 (401)
Q Consensus 58 gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~ 137 (401)
++...++...+...-.-.......+ ..-++.-++|..||+++..+..+...+...|.-.......++.++.+.+...+
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~--~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~ 108 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGAD--TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFG 108 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444443333334444443 33567899999999999999999999999998888888888888887754322
Q ss_pred cccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHhhhc-c-------ccCC---chhhhhhh
Q 048146 138 IISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGA-V-------DGVG---LPTAVSLY 206 (401)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~-~-------~~~~---~~~~~~~~ 206 (401)
.. .......+..++..+.+. ...+.++++..++........+...+... . +.++ +..++...
T Consensus 109 ~~------~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 181 (386)
T TIGR02358 109 EE------SPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRAGDMSFAVAVELV 181 (386)
T ss_pred CC------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCCCCccHHHHHHHH
Confidence 11 112333344444555553 36666666666666655554433222111 1 0111 12222111
Q ss_pred hhh--ccccccccchhhhccccchhhHHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHh
Q 048146 207 TFC--YCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLIN 284 (401)
Q Consensus 207 ~fa--f~~~~~~~~i~~~m~~p~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~ 284 (401)
.+ -......++..+..|+|||.-.....+..+...+...+|.....+.++....+...... .. ..+.+...++
T Consensus 182 -~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g---~~-~~~~~~~~l~ 256 (386)
T TIGR02358 182 -IAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG---LG-IPALLIILLS 256 (386)
T ss_pred -HHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc---HH-HHHHHHHHHh
Confidence 21 12334578999999999988888888999999999999998888877653333333221 11 1222334455
Q ss_pred hhhhhhhhHhhHHHHHhccCCCCCCCCchhhhHHHHHHHHHHHHhh--ccchhHHHHhhhhhhHHHHHHhhhh
Q 048146 285 PLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAIT--IPFFGYVLAFTGSFLGVTVSILLPC 355 (401)
Q Consensus 285 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~p~~~~i~~l~G~~~~~~~~~ilP~ 355 (401)
.+++-....++.-..+.+.+++.+ ++++.. ...+..+.++.. ...+++++++.|....+.....+-=
T Consensus 257 ~~~~n~~N~ys~~l~l~~l~~~~~-~~~~~~---i~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i~D 325 (386)
T TIGR02358 257 TVTTTFMDIYSAAISTGNLLPRLK-VKHLAI---GVGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVFVD 325 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-chHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677777666666663222 222221 122222233322 3567888888887766655544433
No 60
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.22 E-value=0.002 Score=61.53 Aligned_cols=299 Identities=14% Similarity=0.085 Sum_probs=153.1
Q ss_pred HHHHHhhhhhhhchhHHHHH-hhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHH
Q 048146 33 LNGLNVVSGVGILSIPYALS-QGG--WL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSIL 108 (401)
Q Consensus 33 ~~l~~~~iG~Gil~LP~~~~-~~G--~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~ 108 (401)
+.+.+..+|+|.+-.|-... ++| |. +.+.+++.++..-..+.. +..+ ...+|.++.+++ ||+...+..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~--~gG~~~~l~~~~-g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALAL--VGGGYDSLSARI-GKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeee--cCCCHHHHHHHh-ChHHHHHHHHH
Confidence 45678889999999886654 466 55 777777777766665544 2222 226888888765 56666666555
Q ss_pred HHHHHHH-------HHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHH
Q 048146 109 MYLELYF-------VAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLAS 181 (401)
Q Consensus 109 ~~~~~~g-------~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 181 (401)
+.+...- ..++|-.. ++.+++... .........+++..+...++ .|.-|....+..+-+...
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~------~~~~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSPT------SLLALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCccc------chHHHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHH
Confidence 5543321 22333332 333333210 00011223334444444455 556666666666666666
Q ss_pred HHHHHHHHhhhcccc--------------CCchhhhhhhhhhcc-------ccccccchhh-hccccch-hhHHHHHH--
Q 048146 182 ITLVACVLWVGAVDG--------------VGLPTAVSLYTFCYC-------GHSVFPTLCN-SMKDRRQ-FSKVLAAC-- 236 (401)
Q Consensus 182 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~faf~-------~~~~~~~i~~-~m~~p~~-~~~~~~~~-- 236 (401)
+..+..++..+..++ ..+.+++-.-.+.++ +...+-.+++ |+|||+| .++++..+
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 665555555443221 112333444445555 6667777777 8999854 44444444
Q ss_pred -HHHHHHHHHHHHhHHHhhhc---cc-chhhhHhcc-----CC-cchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCC
Q 048146 237 -FIISTANYGSMAILGYLMYG---DH-LKSQVTLNL-----PI-RKISSKLAIYTTLINPLTKYAVIITPIATALEDTPH 305 (401)
Q Consensus 237 -~~i~~~~y~~~g~~gy~~fg---~~-~~~~il~~~-----~~-~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 305 (401)
......+|...+..|...-+ +. ..+.++.+. .+ ......+... +..+++---....+-|.++++.+
T Consensus 225 a~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~---lACLtT~iGli~~~a~~f~~~~~ 301 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIIT---LACLTTAVGLTTACSEYFHKLVP 301 (378)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555566666666554422 11 122233222 11 1122222222 22222222233334455555532
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhh
Q 048146 306 LRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRI 361 (401)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~ 361 (401)
|..+...-....+.+++++.. .++.++++ +...+.+++|..+.+-.
T Consensus 302 ----k~~y~~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 302 ----KLSYKTWVIVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 333333344444444444443 77777775 55677777887766643
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.17 E-value=0.01 Score=59.20 Aligned_cols=145 Identities=19% Similarity=0.145 Sum_probs=98.1
Q ss_pred CCCchhHHHHHHHHHhhhh-hhhchhHHHHHhhcHH-HHHHH---HHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 048146 23 SEGTTFLRTCLNGLNVVSG-VGILSIPYALSQGGWL-SLIIL---FLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG-~Gil~LP~~~~~~G~~-gii~~---~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~ 97 (401)
+|+.+.+-.......+..+ ...+++|....+.|+. ..+.. +...+...+-...+.+.. ++++..|.+|+-++-|
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEARF 115 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHHc
Confidence 4445555666666666666 7889999998888875 22222 344445555566666666 4568999999999999
Q ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHH
Q 048146 98 G-CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAG 176 (401)
Q Consensus 98 G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 176 (401)
| |+.|.+..+...+....-+...+...+..++..+. .+. ..-..+...++........++...+...+
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~----------~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISY----------VTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCH----------HHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 9 88999999999999999999999999988866665 321 12223334444445555566655555544
Q ss_pred HHH
Q 048146 177 GVL 179 (401)
Q Consensus 177 ~~~ 179 (401)
--.
T Consensus 185 qg~ 187 (493)
T COG0591 185 QGL 187 (493)
T ss_pred HHH
Confidence 433
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=98.13 E-value=0.0078 Score=58.57 Aligned_cols=275 Identities=14% Similarity=0.063 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 048146 58 SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGF 137 (401)
Q Consensus 58 gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~ 137 (401)
.++..++...+...-..+......+ ..-++.-+++..||.++..+..+...+...+.........++.+++..+ ..
T Consensus 44 ai~aiilG~~i~~~~~~l~~~~G~k--~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~- 119 (404)
T PRK11017 44 FLLAVLIGNLLLGIYTAALGYIGAK--TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LD- 119 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CC-
Confidence 5544444444444333344444444 3467899999999999999998888888877766666666665555432 11
Q ss_pred cccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHH-hhhcc--------c--c---CCchhhh
Q 048146 138 IISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVL-WVGAV--------D--G---VGLPTAV 203 (401)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~-~~~~~--------~--~---~~~~~~~ 203 (401)
.. ...++..++..+.... ..+.+++++..+........+... +.... + + ..+..++
T Consensus 120 --------~~-~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 189 (404)
T PRK11017 120 --------IN-LLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAAL 189 (404)
T ss_pred --------HH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHH
Confidence 01 2333444444444432 334444444444333332222111 11000 0 0 1123333
Q ss_pred hhhhhh-ccccccccchhhhccccchhhHHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHH
Q 048146 204 SLYTFC-YCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTL 282 (401)
Q Consensus 204 ~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~ 282 (401)
...+=. -..-.+.++..+..|+||+.......+..+...+...+|.....+.|+....+... ..... ........
T Consensus 190 ~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~---~~~~~-~~~l~~~~ 265 (404)
T PRK11017 190 TLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMI---AQGLL-IPAIVMLG 265 (404)
T ss_pred HHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH---HhchH-HHHHHHHH
Confidence 332222 23456788999999888776666667776777777777776666676532222221 11111 11222233
Q ss_pred HhhhhhhhhhHhhHHHHHhccCCCCCCCCchhhhHHHHHHHHHHHHh-hccchhHHHHhhhhhhHHHHHHhhhh
Q 048146 283 INPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAI-TIPFFGYVLAFTGSFLGVTVSILLPC 355 (401)
Q Consensus 283 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~p~~~~i~~l~G~~~~~~~~~ilP~ 355 (401)
++..++-....++.--...+..+ .+++ +. ..+..++++.++. ...++++++++.|...++.....+-=
T Consensus 266 l~~~t~n~~~~ys~~l~~~~l~~--~~~~-~~--~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~gI~i~D 334 (404)
T PRK11017 266 LNIWTTNDNALYASGLGFCNITR--LSSR-TL--TVVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGGVIIAD 334 (404)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhc--Ccch-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 33333333333333334444431 1111 11 2222222333332 33677888888887766655544433
No 63
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.07 E-value=0.00044 Score=68.21 Aligned_cols=336 Identities=14% Similarity=0.036 Sum_probs=161.5
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhchhHHHHHhh--cHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGILSIPYALSQG--GWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~--G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
++|+.+.++.+..-.+..+...-+.+-...... ++- +++..++..++...-.........+ ..-+..-++|..||
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r--~Gl~~~v~sR~~FG 82 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR--TGLPTMVLSRASFG 82 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC--C---HHHHTTTTS-
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCchhcchhccC
Confidence 344455666666666666665555444443333 334 6666665555555544445554444 33567888999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc---cc-cc-ccccchHHH-HHHHHHHHhhhccccCchhHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFI---IS-GL-KIGGKQGFV-LLTALIIWPTTWLRSLGILAY 172 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~---~~-~~-~~~~~~~~~-~~~~~~~~pl~~~~~l~~l~~ 172 (401)
+++..+..+...+...|....-....++.+..+.+...++ .+ .. ......+.. ++..++..+.. ....+.++.
T Consensus 83 ~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~l~~ 161 (440)
T PF02133_consen 83 YRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKALRR 161 (440)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHHHHh
Confidence 9999999999999999998888889999998887655321 00 00 000011111 22223333333 345566666
Q ss_pred HHHHHHHHHHHHHHHHH-hhhcc-cc---------CC----chhhhhhhhhhc-cccccccchhhhccccchhhHHHHHH
Q 048146 173 VSAGGVLASITLVACVL-WVGAV-DG---------VG----LPTAVSLYTFCY-CGHSVFPTLCNSMKDRRQFSKVLAAC 236 (401)
Q Consensus 173 ~s~~~~~~~~~~~~~~~-~~~~~-~~---------~~----~~~~~~~~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~~ 236 (401)
+..+.........+... +.... +. .. +..++....-.+ ....+.+...+.+|++++-.+....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~ 241 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLG 241 (440)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHH
T ss_pred HHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeeh
Confidence 65555444333322222 21111 10 00 112222222111 22244568889999888888888888
Q ss_pred HHHHHHHHHHHHhHHHhhhcc----cchhh--hHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCC
Q 048146 237 FIISTANYGSMAILGYLMYGD----HLKSQ--VTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSR 310 (401)
Q Consensus 237 ~~i~~~~y~~~g~~gy~~fg~----~~~~~--il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 310 (401)
..........++..+...-+. +..+. ++..+.+.-...............+..-...++.-..+.+..+++-++
T Consensus 242 ~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~~~~~~ 321 (440)
T PF02133_consen 242 FPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFPKRISR 321 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCSTTT--H
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHccceeecc
Confidence 888878877777776655432 22111 122221110111111112222333444455667777777777632222
Q ss_pred CchhhhHHHHHHHHHHHHhh--ccc-hhHHHHhhhhhhHHHHHHhhhhhhHHh
Q 048146 311 PISILVRTVLVISTVIVAIT--IPF-FGYVLAFTGSFLGVTVSILLPCLCYLR 360 (401)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~--~p~-~~~i~~l~G~~~~~~~~~ilP~~~~l~ 360 (401)
+++.....++..+....... ... +.+++++.|..........+==.+..|
T Consensus 322 ~~~~~~~~~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i~Dy~i~r 374 (440)
T PF02133_consen 322 RRGVIIVGVIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMIADYFIVR 374 (440)
T ss_dssp HHHHHHHHHHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 22222222222211111111 123 677888888888776665554444433
No 64
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.03 E-value=0.011 Score=57.26 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=87.7
Q ss_pred CCCchhHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHH---HHHHHHHHHHHHHhhhhCCCCCCh-----HHHH
Q 048146 23 SEGTTFLRTCLNGLNVVSGVG-ILSIPYALSQGGWLSLIILFLV---AVLCWYTGLLLRRCMDANPLIKTY-----PDIG 93 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~G-il~LP~~~~~~G~~gii~~~~~---~~~~~~s~~~l~~~~~~~~~~~~y-----~~~~ 93 (401)
+++.|.+|+......+.+|+| ++.+|.+....|.-++..+-+. +..+.++-..+..-.++++++++| ..+-
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 456999999999999999998 9999999777764353333333 333333333343333433454557 7888
Q ss_pred HHhcccchhHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHH
Q 048146 94 DLAFGCKGRAMVSILMYLELYF-VAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAY 172 (401)
Q Consensus 94 ~~~~G~~~~~~~~~~~~~~~~g-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 172 (401)
+...|||...+..++ .+..++ .........++.+++.+ .. ..+...+..+++.-+.....+|.+..
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~---~~---------~~~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF---NV---------PKLVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc---CC---------cHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 888888877777776 433333 23344444445554322 10 11333333333333334568888888
Q ss_pred HHHHHHHHHHH
Q 048146 173 VSAGGVLASIT 183 (401)
Q Consensus 173 ~s~~~~~~~~~ 183 (401)
++...+..+..
T Consensus 191 v~~~lvP~m~~ 201 (425)
T TIGR00835 191 ISSVVVPFMAL 201 (425)
T ss_pred HHHHHHHHHHH
Confidence 87766665443
No 65
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.02 E-value=0.02 Score=57.02 Aligned_cols=151 Identities=11% Similarity=-0.052 Sum_probs=95.9
Q ss_pred CCCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHH-HHHHH---HHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWL-SLIIL---FLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLA 96 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~-gii~~---~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~ 96 (401)
..|+.+.+.....+..+.+|++- ++.|....+.|+. ..... ....+....-+..+.+..++. +..|.+|+-++-
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 35778889999999999888776 5788777776753 11110 111111111223344444554 889999999999
Q ss_pred cccc-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHH
Q 048146 97 FGCK-GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSA 175 (401)
Q Consensus 97 ~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 175 (401)
+|++ .+.+..+...+..++...+.+...+..++.+++- + ...-.++..+++.-......++...+...
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-~----------~~~~iii~~~iv~iYt~~GG~~av~~td~ 185 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-S----------YLTALFIFSSSVLIYTTFGGFRAVALTDA 185 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9965 4677777777777777777777777777766531 1 11233344555666666778888888877
Q ss_pred HHHHHHHHH
Q 048146 176 GGVLASITL 184 (401)
Q Consensus 176 ~~~~~~~~~ 184 (401)
+..+..+..
T Consensus 186 iQ~~v~~~~ 194 (471)
T TIGR02119 186 IQGIVMFTG 194 (471)
T ss_pred HHHHHHHHH
Confidence 766555443
No 66
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.01 E-value=0.017 Score=56.39 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=99.3
Q ss_pred CCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc-
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK- 100 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~- 100 (401)
.|+.+.+...+.+..+.+|++. ++.|....+.|+.+...............+...+..++. +..|.+|.-++-+|++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINN-GAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCchhHHHHHHhCchH
Confidence 3567777788888777777665 678887777786533333333333444555666655554 7899999999999984
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLA 180 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~ 180 (401)
.+.+..+...+..+......+...+..++.+.+ .+ ...-.++..+++.-......++...+...+..+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~----------~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LD----------LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ch----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 666666777777777788888888888877653 11 1133344455555666677888888877777655
Q ss_pred HHH
Q 048146 181 SIT 183 (401)
Q Consensus 181 ~~~ 183 (401)
.+.
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 444
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.93 E-value=0.0063 Score=59.36 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=84.9
Q ss_pred CCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccch
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKG 101 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 101 (401)
.|+.+.+...+.+..+.+|++- ++.|-...+.|+.+....+............+.+-.++. +..|.+|+-++-+|++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCch
Confidence 4667888888888888888754 678888878786532222222333333444555555554 88999999999999988
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 102 --RAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 102 --~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
+.+..+...+.........+...+..++.+.+ .+ .....++..++.+.......++...+...+..+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~----------~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IP----------YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccc-hh----------hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 66656656666667777777777777776653 11 113334455555566667777766666655544
Q ss_pred HHH
Q 048146 180 ASI 182 (401)
Q Consensus 180 ~~~ 182 (401)
..+
T Consensus 153 i~~ 155 (406)
T PF00474_consen 153 IMI 155 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 68
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.012 Score=59.25 Aligned_cols=167 Identities=11% Similarity=0.164 Sum_probs=103.5
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCChHHHHHHhc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGIL-SIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA--NPLIKTYPDIGDLAF 97 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gil-~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~--~~~~~~y~~~~~~~~ 97 (401)
..+-++..+...-.+..+.|.-++ =|-|....+|.. +..+.++|+..+..++.-+...+.. -|...+|.-+. +.+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmIS-RsL 189 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMIS-RSL 189 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEe-ccc
Confidence 344556667777788888888764 488899999999 9999999888888887766555444 24567887766 455
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hcccccc-------cccccccccchHHHHHHHHHHHhhhccccCch
Q 048146 98 GCKGRAMVSILMYLELYFVAVEFLILEGDNLEK-LFPNFGF-------IISGLKIGGKQGFVLLTALIIWPTTWLRSLGI 169 (401)
Q Consensus 98 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 169 (401)
|+-.+-.+..+..+-.-.....|+...-+.+-. ++|.... +...-..++-|++..++.+++.-..+. ..|.
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~-GVK~ 268 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFV-GVKF 268 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHH-HHHH
Confidence 665556667776666666677787777776654 3332210 001111223345554444444333322 5666
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 048146 170 LAYVSAGGVLASITLVACVLW 190 (401)
Q Consensus 170 l~~~s~~~~~~~~~~~~~~~~ 190 (401)
...++-..+.|+++.++++..
T Consensus 269 Vnk~A~vfL~CVILSIlaiya 289 (1075)
T KOG2082|consen 269 VNKFAPVFLACVILSILAIYA 289 (1075)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 666666666666666555443
No 69
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.78 E-value=0.0025 Score=59.53 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=126.0
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG 98 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G 98 (401)
..+.-..+.+..+.+=..++-|+|...=|-.-.+.||+ +.+.+++-+++.--.+....-..+-+++-+|.+|++++..|
T Consensus 46 GvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG 125 (376)
T PF02554_consen 46 GVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLG 125 (376)
T ss_pred CCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 34455678889999999999999999999888999999 88888877777666666665554444588999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHH
Q 048146 99 CKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGV 178 (401)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 178 (401)
|+++.+..+..++.+.....++....++.+.+.-... ...+..+...+.+-....|+-..+...+.+++
T Consensus 126 ~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~~~-----------~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~v 194 (376)
T PF02554_consen 126 KRAKKLFLIFIFFLLILVIAVFADVVANTFVNSPWAA-----------TSSLLFIPIAILFGLLVYKRGGNLGPATIIGV 194 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHH-----------HHHHHHHHHHHHHhHhheecCCchHhhHHHHH
Confidence 9999999999999998888888887777764421100 11233333333333333333334455555444
Q ss_pred HHHHHHHHHHHhhhccccCC--chhhhhhhhhhccccccccchhhhccccch
Q 048146 179 LASITLVACVLWVGAVDGVG--LPTAVSLYTFCYCGHSVFPTLCNSMKDRRQ 228 (401)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 228 (401)
..... .++.+...+.. -.+.-..+++.|.....+.|+-.-+. |++
T Consensus 195 vll~~----~v~~G~~~p~~~~~~~~W~~ii~~Y~~iAs~lPVw~Llq-prd 241 (376)
T PF02554_consen 195 VLLLL----AVWLGMYFPISLLSVTTWIIIIFIYYFIASVLPVWKLLQ-PRD 241 (376)
T ss_pred HHHHH----HHHhhhhcccccCcHHHHHHHHHHHHHHHHHhhHHHHhC-chH
Confidence 33222 22222221111 12334456677777777777655555 444
No 70
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.77 E-value=0.053 Score=54.15 Aligned_cols=150 Identities=10% Similarity=-0.041 Sum_probs=90.6
Q ss_pred CCCchhHHHHHHHHHhhhhhh-hchhHHHHHhhcHHH----HHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 048146 23 SEGTTFLRTCLNGLNVVSGVG-ILSIPYALSQGGWLS----LIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~G-il~LP~~~~~~G~~g----ii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~ 97 (401)
.|+.+.+...+.+..+.+|++ .++.|....+.|+.. ........+...+.+..+.+..++. +..|.+|+-++-+
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~Ry 118 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRARY 118 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHh
Confidence 566778888888877777764 467887666666531 1111111112222333444445554 8899999999999
Q ss_pred ccch-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHH
Q 048146 98 GCKG-RAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAG 176 (401)
Q Consensus 98 G~~~-~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 176 (401)
|++. +.+..+...+..+......+...+..++.++. .+ ...-.++..++++-.+....++...+...+
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-IS----------YETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8654 55556555555555566666677777776653 11 113334445555667777888888877776
Q ss_pred HHHHHHHH
Q 048146 177 GVLASITL 184 (401)
Q Consensus 177 ~~~~~~~~ 184 (401)
..+..+..
T Consensus 188 Q~~i~~~~ 195 (483)
T PRK09442 188 QGIVMLVG 195 (483)
T ss_pred HHHHHHHH
Confidence 65554443
No 71
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.054 Score=52.39 Aligned_cols=351 Identities=15% Similarity=0.046 Sum_probs=169.8
Q ss_pred chhHHHHHHHHHhhhhhhhchhHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHH
Q 048146 26 TTFLRTCLNGLNVVSGVGILSIPYAL-SQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAM 104 (401)
Q Consensus 26 ~s~~~~~~~l~~~~iG~Gil~LP~~~-~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 104 (401)
....+..+....+-+|.|-.+--.+. ++-|+-=...+++.-...+.-.+.-.|...- ...+.+|..++-++|+..++
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgiv--TG~~laq~ir~~y~~~~~~~ 94 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIV--TGKGLAEAIRERYLPGLGIL 94 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHccchHHHH
Confidence 44445555555566666654433222 2344421111111122222222222222222 34678888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHH
Q 048146 105 VSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITL 184 (401)
Q Consensus 105 ~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 184 (401)
..+...+....+.++.....+-.++-++.-. ..+-.+++++..+.....|+.+.+-.+...-.......
T Consensus 95 ~~~~~~i~~~at~iae~~G~aial~ll~~ip-----------~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~~~~i~ 163 (416)
T COG1914 95 LWILAEIAGIATDIAEVAGIAIALNLLFGIP-----------LIIGAVITAVDVLIILLLKGYRLLERVVLILGLVLVIL 163 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888887665322 11223344444444443444555555444322222222
Q ss_pred HHHHHhhh-cc-----cc---CCch--------------hhhhhhhhhccccccccc-hhhhccccchhhH---HHHHHH
Q 048146 185 VACVLWVG-AV-----DG---VGLP--------------TAVSLYTFCYCGHSVFPT-LCNSMKDRRQFSK---VLAACF 237 (401)
Q Consensus 185 ~~~~~~~~-~~-----~~---~~~~--------------~~~~~~~faf~~~~~~~~-i~~~m~~p~~~~~---~~~~~~ 237 (401)
........ .. .+ +..+ +-.|-.. |.++..+-+ ..++-+++++.++ -...++
T Consensus 164 ~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~--y~~s~~v~~~~~~~~~~~~~~~~~~~d~~i~~ 241 (416)
T COG1914 164 FVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHIL--YLHSSLVQDAGIKGEENLRALRYSRIDTIIGM 241 (416)
T ss_pred HHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHH--HhhcceeccccccchhHHHHHHHHHHHHHHHH
Confidence 22222111 00 00 0010 1112111 111121111 1011111222222 233333
Q ss_pred HHHHHHHHHHHhHHHhhh-cccchh---hhHhcc----C-CcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC-
Q 048146 238 IISTANYGSMAILGYLMY-GDHLKS---QVTLNL----P-IRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLR- 307 (401)
Q Consensus 238 ~i~~~~y~~~g~~gy~~f-g~~~~~---~il~~~----~-~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~- 307 (401)
....+....+-......| +++..+ +....+ | -.+....+-.+..+.+-.++-....+..-..+++..+.+
T Consensus 242 ~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~~~~ 321 (416)
T COG1914 242 IIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLNWRI 321 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhcccC
Confidence 333333333333333333 333212 221111 1 011111111122222333333434444445666666655
Q ss_pred CCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcc---c-ccchhHHHHHHHHHHHhh
Q 048146 308 KSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKT---A-RRFGLELMLIVGILLIGA 383 (401)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~---~-~~~~~~~~~~~~~~~~g~ 383 (401)
+++.+|...|.+..+++..+.....+...++.+.+.+.+..+-+..+.++.+-.+|+ + +.++|.++..|.+.++-.
T Consensus 322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~ 401 (416)
T COG1914 322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIV 401 (416)
T ss_pred chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHH
Confidence 456677788877777777777666699999999999988877777777777766664 2 345566666666665555
Q ss_pred HHhhHhhH
Q 048146 384 LAAVVGTY 391 (401)
Q Consensus 384 ~~~v~g~~ 391 (401)
.+.+.-.+
T Consensus 402 ~L~i~li~ 409 (416)
T COG1914 402 ALNIILLV 409 (416)
T ss_pred HHHHHHHH
Confidence 55444444
No 72
>PRK12488 acetate permease; Provisional
Probab=97.62 E-value=0.1 Score=52.99 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=95.5
Q ss_pred CCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHHHHHHHHHHHHHHHH-HHHHHHHhhhhCCCCCChHHHHHHhcc-c
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWLSLIILFLVAVLCWY-TGLLLRRCMDANPLIKTYPDIGDLAFG-C 99 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~gii~~~~~~~~~~~-s~~~l~~~~~~~~~~~~y~~~~~~~~G-~ 99 (401)
.|+.+.+...+.+..+.++++- ++.|-...+.|+.+...... ..+.+. ....+.+-.++. +..|.+|.-++=+| |
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g-~~~g~~~~~~~~a~~lr~~-g~~T~~d~l~~Rf~s~ 143 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALG-VLAGWPIILFLIAERLRNL-GKYTFADVVSYRLAQG 143 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHHHHHHHHHHHHHHC-CCcchHHHHHHHcCCC
Confidence 4678888888888888777775 67998777778654322211 112222 123445444554 77899999888777 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
+.|.+..+...+.........+...+..++.++. .+ ...-.++..+++.-.+....++...+...+..+
T Consensus 144 ~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 144 PVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-IS----------YLYAVVIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 6888888777777777677777777777776642 11 112234455566666777788887777776655
Q ss_pred HHHH
Q 048146 180 ASIT 183 (401)
Q Consensus 180 ~~~~ 183 (401)
..+.
T Consensus 213 im~~ 216 (549)
T PRK12488 213 LLLS 216 (549)
T ss_pred HHHH
Confidence 5444
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.38 E-value=0.16 Score=49.64 Aligned_cols=298 Identities=11% Similarity=0.050 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhH---HHHHHHHHHHHHHHHHHHHHhhhhhh----h
Q 048146 58 SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRA---MVSILMYLELYFVAVEFLILEGDNLE----K 130 (401)
Q Consensus 58 gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~~~~~~~~~----~ 130 (401)
.++.+.+..++....+.+-.+...+ ..-+|+..++..||-++.. +.+....+.-||... -..+..++ .
T Consensus 76 allai~vG~~iv~i~m~Lng~~G~~--~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~ 150 (497)
T COG1953 76 ALLAILVGNLIVAIFMVLNGHAGSK--YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGS 150 (497)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccc--cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHH
Confidence 4444444444444444444333333 3468999999999877654 445555555555432 12222222 2
Q ss_pred hcccccccc--c-ccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHhhhc-cc-c-------C-
Q 048146 131 LFPNFGFII--S-GLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGA-VD-G-------V- 197 (401)
Q Consensus 131 ~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~-~~-~-------~- 197 (401)
+.+...... . ....+...+...+..-++--++..+..+.++++-.++-..+.+....+.+... .. + +
T Consensus 151 i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~ 230 (497)
T COG1953 151 IFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPA 230 (497)
T ss_pred hccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCC
Confidence 222211000 0 01111122333333333333445678888888877776666655554433221 11 1 0
Q ss_pred ---C----chhhhhh--hhhhc--cccccccchhhhccccchhhHHHHHHHH----HHHHHHHHHHhHHHhhhccc--ch
Q 048146 198 ---G----LPTAVSL--YTFCY--CGHSVFPTLCNSMKDRRQFSKVLAACFI----ISTANYGSMAILGYLMYGDH--LK 260 (401)
Q Consensus 198 ---~----~~~~~~~--~~faf--~~~~~~~~i~~~m~~p~~~~~~~~~~~~----i~~~~y~~~g~~gy~~fg~~--~~ 260 (401)
+ ....+.. .+.++ ...-|+|...+.-|+|++-..--..+.- +..++=++.+..++..||+. .+
T Consensus 231 ~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P 310 (497)
T COG1953 231 GTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDP 310 (497)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCH
Confidence 0 1111111 12222 2456778888888888655443333333 34444445556677789998 55
Q ss_pred hhhHhccCCcchhh-HHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCCCc--hhhhHHHHHHHHHHHHhhccchhHH
Q 048146 261 SQVTLNLPIRKISS-KLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPI--SILVRTVLVISTVIVAITIPFFGYV 337 (401)
Q Consensus 261 ~~il~~~~~~~~~~-~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~p~~~~i 337 (401)
.++...+++..... .....+.+-++.+...-...+.-.-+.+++++.-+.++ .......+.+.++-+-..-..+...
T Consensus 311 ~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~ 390 (497)
T COG1953 311 LDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYDLSALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFTTF 390 (497)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHHHHHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHHHH
Confidence 57778887654432 12222222222233333333333334444444322111 1122222333333333334467777
Q ss_pred HHhhhhhhHHHHHHhhhhhhHHh
Q 048146 338 LAFTGSFLGVTVSILLPCLCYLR 360 (401)
Q Consensus 338 ~~l~G~~~~~~~~~ilP~~~~l~ 360 (401)
++..|++.+++.+.++--.+..+
T Consensus 391 L~~yg~~LgpiaGVmiaDyflir 413 (497)
T COG1953 391 LGSYGVFLGPIAGVMIADYFLVR 413 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 87777777777776655544443
No 74
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.32 E-value=0.24 Score=50.33 Aligned_cols=148 Identities=13% Similarity=0.097 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHhhhh-hhhchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCChHHHHHHhcc-c
Q 048146 23 SEGTTFLRTCLNGLNVVSG-VGILSIPYALSQGGWLSLIILFLVAVLCW-YTGLLLRRCMDANPLIKTYPDIGDLAFG-C 99 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG-~Gil~LP~~~~~~G~~gii~~~~~~~~~~-~s~~~l~~~~~~~~~~~~y~~~~~~~~G-~ 99 (401)
.|+.+.+...+.+..+.++ ...+..|-...+.|+.+...... ..+.+ ...+.+.+-.++. +..|.+|.-++=+| |
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g-~~~~~~i~~~~~a~~lrr~-g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLG-FLVGWPIILFLIAERLRNL-GRYTFADVASYRLKQR 143 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCCc
Confidence 4667777777777777665 45678998777778654332221 12222 2334555655554 77999999888776 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
..|.+..+...+.........+...+..++.+++- + ...-.++..+++........++...+...+..+
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N----------YHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56777666666666665666667777777666531 1 112234455566666667788777777776655
Q ss_pred HHHH
Q 048146 180 ASIT 183 (401)
Q Consensus 180 ~~~~ 183 (401)
..+.
T Consensus 213 im~~ 216 (549)
T TIGR02711 213 LLLF 216 (549)
T ss_pred HHHH
Confidence 4433
No 75
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.22 E-value=0.22 Score=47.98 Aligned_cols=227 Identities=15% Similarity=0.145 Sum_probs=111.9
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHH-HH----HHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHH
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWL-SL----IILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGD 94 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~-gi----i~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~ 94 (401)
++++-.|...-+...+++.+|-|= --.||...+.|-- -. +.++..+.-....=..+.|..++. ..++|.++..
T Consensus 4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~-~~~a~~~l~~ 82 (439)
T COG0733 4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKN-AVGAFRKLAP 82 (439)
T ss_pred cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCC-hhHHHHHhcc
Confidence 344556888889999999999986 5689987776643 22 222222222222223333333332 4455655554
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccc----c------ccccc--cchHHHHHHHHHHHhhh
Q 048146 95 LAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFII----S------GLKIG--GKQGFVLLTALIIWPTT 162 (401)
Q Consensus 95 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~----~------~~~~~--~~~~~~~~~~~~~~pl~ 162 (401)
+|+++ ...+......+..+.-|.++.+=.+.-+........ + ....+ .......+...++.-..
T Consensus 83 ---~~~~~-~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~i 158 (439)
T COG0733 83 ---KKKWE-WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALI 158 (439)
T ss_pred ---Cccch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33332 333333444444444444444433322221111100 0 00001 11111111122222222
Q ss_pred ccccCch-hHHHHHHHHHHHHHHHHHHHhhhcc-cc-------------------CCchhhhhhhhhhc-cccccccchh
Q 048146 163 WLRSLGI-LAYVSAGGVLASITLVACVLWVGAV-DG-------------------VGLPTAVSLYTFCY-CGHSVFPTLC 220 (401)
Q Consensus 163 ~~~~l~~-l~~~s~~~~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~faf-~~~~~~~~i~ 220 (401)
..|..++ ..+.+.+-+...+...+.++.+... ++ ..+..++|...|+. .|.....+..
T Consensus 159 v~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYs 238 (439)
T COG0733 159 VSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYS 238 (439)
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344433 5555555444444444444433221 11 12677888888888 4666677888
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHhHHH
Q 048146 221 NSMKDRRQFSKVLAACFIISTANYGSMAILGY 252 (401)
Q Consensus 221 ~~m~~p~~~~~~~~~~~~i~~~~y~~~g~~gy 252 (401)
+.++|+++..+........-..+-++.|+..+
T Consensus 239 SYL~k~~~l~~sa~~v~~~n~~~s~lAGl~If 270 (439)
T COG0733 239 SYLSKKSDLVSSALSIVLLNTLISLLAGLVIF 270 (439)
T ss_pred hhcCcccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999988887666666655555555554433
No 76
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=97.18 E-value=0.33 Score=49.05 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=87.5
Q ss_pred HHhhhccccCchhHHHHHHHHHHHHHHHHHHHhhhcc-cc------------C-------Cchhhhhhhhhhcc-ccccc
Q 048146 158 IWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAV-DG------------V-------GLPTAVSLYTFCYC-GHSVF 216 (401)
Q Consensus 158 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~------------~-------~~~~~~~~~~faf~-~~~~~ 216 (401)
+.-++..|.+++..++............+.+..+... ++ . .+..+++...|+.+ |....
T Consensus 190 iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 190 IVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceE
Confidence 3445567888888887776554222222222222211 00 0 16789999999995 56777
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHHHHH-----HhHHHhhhcc---------cchh-------hhHhccCCcchhhH
Q 048146 217 PTLCNSMKDRRQFSKVLAACFIISTANYGSM-----AILGYLMYGD---------HLKS-------QVTLNLPIRKISSK 275 (401)
Q Consensus 217 ~~i~~~m~~p~~~~~~~~~~~~i~~~~y~~~-----g~~gy~~fg~---------~~~~-------~il~~~~~~~~~~~ 275 (401)
...-+.+|+.++..|.............++- ++.|+.+... +.++ .+...+|.++....
T Consensus 270 it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~ 349 (523)
T PF00209_consen 270 ITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAI 349 (523)
T ss_dssp HHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHH
T ss_pred EEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHH
Confidence 7778888887888776655555555555443 3444443321 1111 12233444433333
Q ss_pred HHHHHHHHhhhhhhhhhHhhHHHHHhccCCCCCCCCchhhhHHHHHHHHHHHHhh
Q 048146 276 LAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAIT 330 (401)
Q Consensus 276 i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 330 (401)
+-..+..+..+++--....+....++|.++.+++ +|...+..+.+..+++++.
T Consensus 350 lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~~~--~r~~~~~~v~~~~~l~gl~ 402 (523)
T PF00209_consen 350 LFFLMLFLAGLTSQISMLEVIVSALMDEFPISRK--KRKKVTLIVCLVGFLLGLP 402 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTST------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCceeceeEeeeecCccchh--hccceeHHHhhhHeEeccc
Confidence 3333333444555555667777888877754322 4444455555555555544
No 77
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.16 E-value=0.29 Score=48.08 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=35.4
Q ss_pred CCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 048146 85 LIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLF 132 (401)
Q Consensus 85 ~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~ 132 (401)
..++..|..++-+||+..++..+...+...++........+..++.++
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999988877777666667776676766666665543
No 78
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.10 E-value=0.041 Score=55.12 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=106.7
Q ss_pred chhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 048146 45 LSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA--NPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFL 121 (401)
Q Consensus 45 l~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~--~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~ 121 (401)
|=.|+...|+|.+ .+..+++...+..++..-+...+.. -.+.+-|.-+.+. +|+-.+--+.....+.+...|..++
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRs-LGpEfGGSIGllFf~anV~~~am~i 166 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRS-LGPEFGGSIGLLFFVANVFNCAMNI 166 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcc-cCcccCCeeeehhhHHHHhcchhhh
Confidence 3467777888887 7766666666666655444332222 1144566665544 4443333445555556666677777
Q ss_pred HHhhhhhhhhccccc-c-ccccccccc---chHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHhh----h
Q 048146 122 ILEGDNLEKLFPNFG-F-IISGLKIGG---KQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWV----G 192 (401)
Q Consensus 122 ~~~~~~~~~~~~~~~-~-~~~~~~~~~---~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~----~ 192 (401)
..+.|-+-+.+..-. . .....-.++ +..+..+...+++.+|++.+ .-.++.+.+-...+....+.+.+. +
T Consensus 167 sG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGs-alfAkas~i~f~~is~s~~si~iS~ifvg 245 (945)
T KOG1288|consen 167 SGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGS-ALFAKASNILFVVISVSLFSIPISFIFVG 245 (945)
T ss_pred hhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhhHHHHHHhhhhheeEEec
Confidence 777776655554211 1 100011111 23334444455555555532 223333333222222222222221 1
Q ss_pred ccc-cC------------------C-------------------------chhhhhhhhhhccccccccchhhhcccc-c
Q 048146 193 AVD-GV------------------G-------------------------LPTAVSLYTFCYCGHSVFPTLCNSMKDR-R 227 (401)
Q Consensus 193 ~~~-~~------------------~-------------------------~~~~~~~~~faf~~~~~~~~i~~~m~~p-~ 227 (401)
..+ .. + +-..++++.=+=.|...=.+...|+|+| |
T Consensus 246 p~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSk 325 (945)
T KOG1288|consen 246 PFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSK 325 (945)
T ss_pred cccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCccc
Confidence 111 00 0 3344555444444444446678999999 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhH
Q 048146 228 QFSKVLAACFIISTANYGSMAIL 250 (401)
Q Consensus 228 ~~~~~~~~~~~i~~~~y~~~g~~ 250 (401)
.+||-...+...+++.|+++.+.
T Consensus 326 SIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 326 SIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred cCCccchHHHHHHHHHHHHHHHH
Confidence 68999999999999999988654
No 79
>PRK10484 putative transporter; Provisional
Probab=96.99 E-value=0.5 Score=47.77 Aligned_cols=157 Identities=16% Similarity=0.037 Sum_probs=83.2
Q ss_pred CCCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK 100 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 100 (401)
..|+.+++-..+.+..+.++++. ++.|....+.|+.................+.+..-.++. +..|.+|+-++-+|++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDKT 114 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCch
Confidence 35778888888888888776665 678877666775422111111111112333344433443 7889999999999998
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhcccccccccccccccch-HH--HHHHHHHHHhhhccccCchhHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAV-EFLILEGDNLEKLFPNFGFIISGLKIGGKQ-GF--VLLTALIIWPTTWLRSLGILAYVSAG 176 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~pl~~~~~l~~l~~~s~~ 176 (401)
.+.+......+....... ..+...+..+++++.... ..+ .+... .+ .++..++....+....++...+...+
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~g--i~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~i 190 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLG--ISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTI 190 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcC--CcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 877766654443333222 222222333333321100 000 11110 11 12233455566667788888887777
Q ss_pred HHHHHHH
Q 048146 177 GVLASIT 183 (401)
Q Consensus 177 ~~~~~~~ 183 (401)
..+..+.
T Consensus 191 Q~vim~i 197 (523)
T PRK10484 191 NGIGLLI 197 (523)
T ss_pred HHHHHHH
Confidence 6555443
No 80
>PRK09395 actP acetate permease; Provisional
Probab=96.94 E-value=0.57 Score=47.65 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=89.5
Q ss_pred CCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc-cc
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFG-CK 100 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G-~~ 100 (401)
.|+.+.+...+.+..+.++++- ++.|-...+.|+.+........+........+.+-.++. +..|++|+-++=+| |+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~-g~~T~~d~l~~Rygs~~ 146 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNL-GKYTFADVASYRLKQGP 146 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHcCCch
Confidence 4667777777878888777655 689987777787532222211111112233344444443 77999999998888 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLA 180 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~ 180 (401)
.|.+..+...+.........+...+..++.+.+ .+ ...-.++..+++.-.+....++...+...+..+.
T Consensus 147 ~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~----------~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~ii 215 (551)
T PRK09395 147 IRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LN----------YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVL 215 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 777777766665555555666666666666542 11 1133344555666666677888777776665544
Q ss_pred HH
Q 048146 181 SI 182 (401)
Q Consensus 181 ~~ 182 (401)
.+
T Consensus 216 m~ 217 (551)
T PRK09395 216 LL 217 (551)
T ss_pred HH
Confidence 33
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=96.90 E-value=0.011 Score=59.13 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=86.4
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
.+.-..+.+-.+.+=..++-|+|.+.=|..-.+.||+ +.+.+++-.++.--...+..-..+.+++-+|.+|++++..||
T Consensus 78 ~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~ 157 (701)
T PRK15015 78 LDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGP 157 (701)
T ss_pred CCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhH
Confidence 3445567777888999999999999999999999999 888888776666666655555444445889999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048146 100 KGRAMVSILMYLELYFVAVEFLILEGDNL 128 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~~ 128 (401)
+++.+..+..++.......+....+.+.+
T Consensus 158 ~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 158 TAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888777777776666665
No 82
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.88 E-value=0.58 Score=46.85 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCCchhHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH----hhhhCCCCCChHHHHHHhc
Q 048146 23 SEGTTFLRTCLNGLNVVSGVG-ILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRR----CMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~G-il~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~----~~~~~~~~~~y~~~~~~~~ 97 (401)
.|+.+++...+.+..+.+++. .++.|....+.|+.+........+........+.+ ..+++++..|.+|+-++=+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ry 114 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRF 114 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHh
Confidence 566778888777777777655 46788776677765322221111112222333333 2221347889999999999
Q ss_pred ccchhH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHH
Q 048146 98 GCKGRA---MVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVS 174 (401)
Q Consensus 98 G~~~~~---~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 174 (401)
|++.+. +..+...+........-+...+..++.+++ .+ ...-.++..++..-......++...+..
T Consensus 115 g~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~----------~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 115 NDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LD----------YKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 965433 334333333333344455555566665542 11 1133344555666666677888777777
Q ss_pred HHHHHHHHH
Q 048146 175 AGGVLASIT 183 (401)
Q Consensus 175 ~~~~~~~~~ 183 (401)
.+..+..+.
T Consensus 184 ~iQ~~i~~~ 192 (487)
T TIGR02121 184 FVQGLLMFF 192 (487)
T ss_pred HHHHHHHHH
Confidence 766555443
No 83
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.81 E-value=0.67 Score=46.55 Aligned_cols=150 Identities=14% Similarity=0.074 Sum_probs=85.1
Q ss_pred CCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH----HhhhhCCCCCChHHHHHHhc
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWLSLIILFLVAVLCWYTGLLLR----RCMDANPLIKTYPDIGDLAF 97 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~----~~~~~~~~~~~y~~~~~~~~ 97 (401)
.|+.+.+...+.+..+.+++.. ++.|....+.|+.+....+...+........+. .-.+++.+..|.+|.-++=+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry 118 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRF 118 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHh
Confidence 5778888888888877777776 578987777886531111111111111111111 11222347789999999999
Q ss_pred ccchh---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHH
Q 048146 98 GCKGR---AMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVS 174 (401)
Q Consensus 98 G~~~~---~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 174 (401)
|++.+ .+..+...+.....+..-+...+..++.+++ .+ ...-.++..++++.......++...+..
T Consensus 119 ~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 119 EDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MS----------YETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 86533 3344444444444444445555566655543 11 1133444556666677777888888877
Q ss_pred HHHHHHHHH
Q 048146 175 AGGVLASIT 183 (401)
Q Consensus 175 ~~~~~~~~~ 183 (401)
.+..+..+.
T Consensus 188 ~iQ~~imi~ 196 (502)
T PRK15419 188 TVQASLMIF 196 (502)
T ss_pred HHHHHHHHH
Confidence 776655443
No 84
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.41 E-value=1.3 Score=45.03 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=92.1
Q ss_pred CCCCchhHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVG-ILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK 100 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~G-il~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 100 (401)
..|+.+++...+.+..+.++++ .++.|....+.|+.+.................+.+-.++. +..|.+|.-++=+|++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~-~~~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKF-GKYTVPDFIGDRYYSN 108 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCccHHHHHHHHhCCC
Confidence 4577888888888888887654 5788877667776432221111111122345556656665 7889999888888854
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHH
Q 048146 101 -GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVL 179 (401)
Q Consensus 101 -~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 179 (401)
.+.+..+...+.........+...+..++.+.+- + ...-.++..+++.-.+....++...+.-.+..+
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-~----------~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-D----------FETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5777666666666666666666667677666531 1 112334445556666667788877777666644
Q ss_pred HHH
Q 048146 180 ASI 182 (401)
Q Consensus 180 ~~~ 182 (401)
..+
T Consensus 178 im~ 180 (552)
T TIGR03648 178 VLI 180 (552)
T ss_pred HHH
Confidence 433
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.37 E-value=0.091 Score=51.64 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=86.0
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146 22 RSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK 100 (401)
Q Consensus 22 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 100 (401)
+.-.++.+..+.+=..++-|+|.+.=|.--+|.||+ +.+.+++-+++.---+..+.-..+.+++-+|.+|++++.+|+.
T Consensus 48 DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~ 127 (575)
T COG1966 48 DYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRT 127 (575)
T ss_pred ccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhh
Confidence 344678888999999999999999999999999998 8888888777777777666665444458899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNL 128 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~ 128 (401)
.+.+..+...+.......+.....+..+
T Consensus 128 a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 128 AKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877777666656555555544
No 86
>PHA02764 hypothetical protein; Provisional
Probab=96.16 E-value=0.54 Score=43.16 Aligned_cols=93 Identities=20% Similarity=0.085 Sum_probs=67.1
Q ss_pred CCCchhHHHHH-HHHHhhhhhhhchhHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 23 SEGTTFLRTCL-NGLNVVSGVGILSIPYALSQG--GWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 23 ~~~~s~~~~~~-~l~~~~iG~Gil~LP~~~~~~--G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
-|..+.++++. |+.....|.++ +.|+-+... |.-....+++.++++...+....+...+.|+.+.-....++++|+
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP 89 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSS 89 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCc
Confidence 45677888877 66555566554 556544333 444666777778888888888888888888888777888899999
Q ss_pred chhHHHHHHHHHHHHHH
Q 048146 100 KGRAMVSILMYLELYFV 116 (401)
Q Consensus 100 ~~~~~~~~~~~~~~~g~ 116 (401)
+.+.+..+..+......
T Consensus 90 ~~GFLvG~a~WLtl~~G 106 (399)
T PHA02764 90 KFYTIFGISLWLTYVLS 106 (399)
T ss_pred cHHHHHHHHHHHHHHhh
Confidence 99888888777665443
No 87
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.15 E-value=1.3 Score=42.36 Aligned_cols=104 Identities=20% Similarity=0.065 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc
Q 048146 64 LVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLK 143 (401)
Q Consensus 64 ~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 143 (401)
+..++.+.....-.|.... ..++..|..++-+||+..+...+...+........-....+..++-++ +.+
T Consensus 21 l~~~~~~~~q~~~~R~~~~--Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~------- 90 (358)
T PF01566_consen 21 LSNLLKYVFQEMAARLGIV--TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP------- 90 (358)
T ss_pred HHHHHHHHHHHHHHHHhhh--cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC-------
Confidence 3334444444444444333 456788888899999999998888888888888887777777776555 222
Q ss_pred cccchHHHHHHHHHHHhhhc--cccCchhHHHHHHHHHH
Q 048146 144 IGGKQGFVLLTALIIWPTTW--LRSLGILAYVSAGGVLA 180 (401)
Q Consensus 144 ~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~s~~~~~~ 180 (401)
...+..+..+..+-+.+ .++.+.+.++...-+..
T Consensus 91 ---~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~ 126 (358)
T PF01566_consen 91 ---LWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAV 126 (358)
T ss_pred ---cHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 12344444444443333 66777777765543333
No 88
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.032 Score=55.08 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=119.9
Q ss_pred chhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-C-CCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 048146 45 LSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA-N-PLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFL 121 (401)
Q Consensus 45 l~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~-~-~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~ 121 (401)
|=++|-..|+|.. +++++..+..++..+..--....++ . .....|. +..+.+|+..+--+.+...+.+--.+..|.
T Consensus 51 lrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yf-lis~slg~efggsigiIy~f~~aVa~am~~ 129 (643)
T KOG2083|consen 51 LRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYF-LISRSLGPEFGGSIGIIYAFANAVATAMYV 129 (643)
T ss_pred hhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEE-EEEecccccccchhHHHHHHHHHHHHHHhh
Confidence 5589999999998 8888777766666654333222222 1 1233443 334667777777778888888888899999
Q ss_pred HHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHhhhccc------
Q 048146 122 ILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVD------ 195 (401)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~------ 195 (401)
+..+|.+.++++..+.. ..++ +..+..++++..+.. ..++-++.+.+-+...++.+.-.+......
T Consensus 130 vgfaEsv~~l~~~~s~~----~i~g---i~~vt~~ill~i~~a-g~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~ 201 (643)
T KOG2083|consen 130 VGFAESVAHLFETESKE----MIDG---IGSVTVLILLAINVA-GVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSS 201 (643)
T ss_pred hhHHHHHHHHHHhccHH----Hhcc---hhHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcc
Confidence 99999999998765321 2333 233334444444433 555555555543332222222111111100
Q ss_pred c--------------------CCchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHHHHHHHH
Q 048146 196 G--------------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIISTANYGSM 247 (401)
Q Consensus 196 ~--------------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~~~y~~~ 247 (401)
+ ..++..++++.=+..|.-.=.++..++++| +..|+....+...+..+|+.+
T Consensus 202 g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 202 GFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred cccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhh
Confidence 0 015556666666666665667789999999 578999999999999999765
No 89
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=95.23 E-value=3.2 Score=40.27 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=80.9
Q ss_pred ccccCCCCchhHHHHHHHHHhhhhhhhc-hhHHHHHhhcHHHHHHHHHHHHH---HHHHHHHHHHhhhhCCCCCCh----
Q 048146 18 QPQQRSEGTTFLRTCLNGLNVVSGVGIL-SIPYALSQGGWLSLIILFLVAVL---CWYTGLLLRRCMDANPLIKTY---- 89 (401)
Q Consensus 18 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil-~LP~~~~~~G~~gii~~~~~~~~---~~~s~~~l~~~~~~~~~~~~y---- 89 (401)
+.++++++.|.+|++...+.+.+|+|=. ....|....|.-.+..+-+.+++ +-|+-..|.+-.++..++.+|
T Consensus 11 ~~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 11 KKKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 3356667899999999999999999964 57888877776555554444444 444444555444433233333
Q ss_pred HHHHHHhcccch-hHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccc
Q 048146 90 PDIGDLAFGCKG-RAMVSILMYLELYFV--AVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRS 166 (401)
Q Consensus 90 ~~~~~~~~G~~~-~~~~~~~~~~~~~g~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 166 (401)
.-+.++.+|+++ ..+..++ .+..++. .....-.+++.+++-++ . ..+..-+...++.-+.....
T Consensus 91 ~yyi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f~----------i--~~~~~gi~l~~l~~~vi~GG 157 (416)
T PF01235_consen 91 MYYIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAFG----------I--PPWITGIILAILVALVIFGG 157 (416)
T ss_pred HHHHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhcc----------c--cHHHHHHHHHHHHHHHHHcc
Confidence 355666666543 3344444 2223322 23333333333332221 1 11333333333334444677
Q ss_pred CchhHHHHHHHHHH
Q 048146 167 LGILAYVSAGGVLA 180 (401)
Q Consensus 167 l~~l~~~s~~~~~~ 180 (401)
+|.+..++..-+..
T Consensus 158 ikrI~~v~~~lVP~ 171 (416)
T PF01235_consen 158 IKRIAKVSEKLVPF 171 (416)
T ss_pred hhHHHHHHHHHHHH
Confidence 88777776654444
No 90
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.97 E-value=3.9 Score=39.87 Aligned_cols=303 Identities=17% Similarity=0.155 Sum_probs=149.4
Q ss_pred chhHHHHHHHHHhhhhhhhchhHHHHHh-hc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccch
Q 048146 26 TTFLRTCLNGLNVVSGVGILSIPYALSQ-GG--WL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKG 101 (401)
Q Consensus 26 ~s~~~~~~~l~~~~iG~Gil~LP~~~~~-~G--~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 101 (401)
......-+.+.+...|+|=|-.|-...+ +| |. +.+...+.++.--.-+.+- ..+ ...++.++++++.-+.+
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia---~~~--~~~~~~~l~~~v~~~f~ 77 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIA---VAK--SGGGIEDLASRVGPKFA 77 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---Hhh--cCCCHHHHhcccCcHHH
Confidence 3456677889999999999988876654 66 55 8777777766554444221 112 22389998887654444
Q ss_pred hHHHHHHHHHHHHH------HHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHH
Q 048146 102 RAMVSILMYLELYF------VAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSA 175 (401)
Q Consensus 102 ~~~~~~~~~~~~~g------~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 175 (401)
..+..+.+..-.-. ..++|=..+ ..+++. + ..-+.....+++..+...++ .|.-|-..++.-
T Consensus 78 ~if~~~i~l~IGP~~aiPRtaa~sfe~~i----~p~~~~-----~--~~~~~~ifs~iFF~i~~~l~-~~p~kivd~iGk 145 (427)
T PF05525_consen 78 LIFTILIYLSIGPLFAIPRTAAVSFEMGI----APFFPE-----N--SNISLLIFSIIFFAITYLLS-LNPSKIVDRIGK 145 (427)
T ss_pred HHHHHHHHHHHHhcccCcchhhhhHHHhh----hccCCc-----c--cccchhhhhHHHHHHHHHHH-hchhhHHHHHHH
Confidence 33332222111110 011111111 111111 0 01123355566666776676 344455555554
Q ss_pred HHHHHHHHHHHHHHhhhccccCC-----------------------chhhhhhhhhhccccccccchhh-hccccchh--
Q 048146 176 GGVLASITLVACVLWVGAVDGVG-----------------------LPTAVSLYTFCYCGHSVFPTLCN-SMKDRRQF-- 229 (401)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~faf~~~~~~~~i~~-~m~~p~~~-- 229 (401)
+-+...+..+..++..+..++.+ -..+++...|+-... -.+++ ..+|+|+.
T Consensus 146 ~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi---~~i~~~g~~~~k~~~~ 222 (427)
T PF05525_consen 146 FLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIII---NAIRQKGYKDKKEIKK 222 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHhCCCCHHHHHH
Confidence 44444444444444444332111 234445555533211 11211 22334333
Q ss_pred --hHHHHHHHHHHHHHHHHHHhHHHhhhc---ccchh-hhHhcc-----CCc-chhhHHHHHHHHHhhhhhhhhhHhhHH
Q 048146 230 --SKVLAACFIISTANYGSMAILGYLMYG---DHLKS-QVTLNL-----PIR-KISSKLAIYTTLINPLTKYAVIITPIA 297 (401)
Q Consensus 230 --~~~~~~~~~i~~~~y~~~g~~gy~~fg---~~~~~-~il~~~-----~~~-~~~~~i~~~~~~i~~~~~~p~~~~~~~ 297 (401)
.++-.++.....++|...+..|...-+ ++.++ .++.+. .+. .....+...+.| +++---....+-
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lAC---LTTaIGL~~a~a 299 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLAC---LTTAIGLISACA 299 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 346667777777888888777776544 33333 333332 211 122222222222 222222344455
Q ss_pred HHHhccCCCCCCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhh
Q 048146 298 TALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRI 361 (401)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~ 361 (401)
|.+++..+ |..+.....+..+.++++|. -.++.++++ +...+.++.|..+.+..
T Consensus 300 ~yf~~~~~----kisY~~~v~i~~i~S~~ian--~Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 300 EYFSELFP----KISYKVWVIIFTIFSFIIAN--LGLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHHHhc----ccChHHHHHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 66666654 22222333333344444433 356777775 55778889998887754
No 91
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=94.66 E-value=4.6 Score=39.20 Aligned_cols=305 Identities=12% Similarity=0.054 Sum_probs=157.0
Q ss_pred cCCCCchhHHHHHHHHHhhhhhhhc-hhHHHHHhhcHHHHHHH---HHHHHHHHHHHHHHHHhhhhCCCCCCh----HHH
Q 048146 21 QRSEGTTFLRTCLNGLNVVSGVGIL-SIPYALSQGGWLSLIIL---FLVAVLCWYTGLLLRRCMDANPLIKTY----PDI 92 (401)
Q Consensus 21 ~~~~~~s~~~~~~~l~~~~iG~Gil-~LP~~~~~~G~~gii~~---~~~~~~~~~s~~~l~~~~~~~~~~~~y----~~~ 92 (401)
+++++.|.+|++.+.+.+.+|+|=. ....+..-.|.-.+..+ .+.+..+-|+-..|.+-.++..+...| .-.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 6788999999999999999999964 57788887775433332 345555666666666655543334444 234
Q ss_pred HHHhccc-chhHHHHHHHHHHHHH--HHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCch
Q 048146 93 GDLAFGC-KGRAMVSILMYLELYF--VAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGI 169 (401)
Q Consensus 93 ~~~~~G~-~~~~~~~~~~~~~~~g--~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 169 (401)
-++-+|. |...+.. ...+..|| ......-.+++.+++-++.. .+..-+...++.-+.....+++
T Consensus 138 i~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~~------------~~~~gi~la~l~~~VI~GGi~r 204 (452)
T COG1115 138 IEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFGIP------------PLVTGIVLALLVALVIFGGIKR 204 (452)
T ss_pred HHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcCCc------------HHHHHHHHHHHHHHHHHcchHH
Confidence 4455554 4444444 33333334 44555555566665554322 1333333333333444678888
Q ss_pred hHHHHHHHHHHHHHH--HHHHHhhh--ccccC--------------C-------------chhhhhhhhhhc-ccccccc
Q 048146 170 LAYVSAGGVLASITL--VACVLWVG--AVDGV--------------G-------------LPTAVSLYTFCY-CGHSVFP 217 (401)
Q Consensus 170 l~~~s~~~~~~~~~~--~~~~~~~~--~~~~~--------------~-------------~~~~~~~~~faf-~~~~~~~ 217 (401)
...++..-+..+... ...++... ..+-+ . +.+.+.--+||- .|....|
T Consensus 205 Ia~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap 284 (452)
T COG1115 205 IAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAP 284 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcch
Confidence 888887666554432 22221111 01100 0 334445556776 4666677
Q ss_pred chhhhcc--ccchh-----hHHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhH-----hc-cCCc-chhhHHHHHHHHH
Q 048146 218 TLCNSMK--DRRQF-----SKVLAACFIISTANYGSMAILGYLMYGDHLKSQVT-----LN-LPIR-KISSKLAIYTTLI 283 (401)
Q Consensus 218 ~i~~~m~--~p~~~-----~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il-----~~-~~~~-~~~~~i~~~~~~i 283 (401)
..+.+-+ ||-|= -....-++++|+.--+.+=+.|.+..++..++..+ .+ +++. .....++.++..+
T Consensus 285 ~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFaf 364 (452)
T COG1115 285 IAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAF 364 (452)
T ss_pred hHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 7766555 56222 22222344444444444444444434442122222 22 3321 2222233333333
Q ss_pred hhhhhhhhhHhhHHHHHhccCCCCCCCCchhhhHHHHHHHHHHHHhh-ccchhHHHHhhhhh
Q 048146 284 NPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAIT-IPFFGYVLAFTGSF 344 (401)
Q Consensus 284 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~p~~~~i~~l~G~~ 344 (401)
++.--..+=...+++-+. ++|..-...|...+....+-+.. .|.++++-+...++
T Consensus 365 ---TTIlg~yyyge~~~~fl~---~~k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~gl 420 (452)
T COG1115 365 ---TTILGWYYYGEKNIEFLF---GSKKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMGL 420 (452)
T ss_pred ---HHHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHhccccHHHHHHHHHHhchH
Confidence 333334444455555554 23344567777777766665554 36666666665544
No 92
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.21 E-value=0.4 Score=46.58 Aligned_cols=114 Identities=15% Similarity=0.292 Sum_probs=73.1
Q ss_pred HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048146 50 ALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNL 128 (401)
Q Consensus 50 ~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~ 128 (401)
...++|.+ ++.+.++-+.+.+.....-....+..++..=..+++++++|+.|..+..+...+.|+-+++.-....+|+.
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf 302 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF 302 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666 54444444444444332222211222233445688999999999999999999999999999999999999
Q ss_pred hhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHH
Q 048146 129 EKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVS 174 (401)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 174 (401)
++..+..+ .+.|..++.++...++.. .++.+-.++
T Consensus 303 ~~~~~kis----------Y~~~v~i~~i~S~~ian~-Gl~~Ii~~s 337 (427)
T PF05525_consen 303 SELFPKIS----------YKVWVIIFTIFSFIIANL-GLDQIIKIS 337 (427)
T ss_pred HHHhcccC----------hHHHHHHHHHHHHHHHHh-CHHHHHHHH
Confidence 99987332 335666666666655533 444433333
No 93
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.08 E-value=0.8 Score=43.98 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=45.0
Q ss_pred CCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 048146 85 LIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPN 134 (401)
Q Consensus 85 ~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~ 134 (401)
+..-..+++++.+|+.++.+..+...+.++.+++......+|..+++.+.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44556789999999999999999999999999999999999999998763
No 94
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=93.32 E-value=9.5 Score=38.02 Aligned_cols=29 Identities=10% Similarity=-0.056 Sum_probs=22.2
Q ss_pred cccCCCCchhHHHHHHHHHhhhhhhhchh
Q 048146 19 PQQRSEGTTFLRTCLNGLNVVSGVGILSI 47 (401)
Q Consensus 19 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~L 47 (401)
.+++|++-|.++...++.++-+|+|++.-
T Consensus 68 g~d~kPefS~~sW~aMlf~aGig~Givfw 96 (485)
T PF02028_consen 68 GDDAKPEFSTFSWFAMLFCAGIGAGIVFW 96 (485)
T ss_dssp STSS--SS-HHHHHHHHHHHCSSHHHHHH
T ss_pred CCCCCCCCCchHHHHHHHHHHhcchhhcc
Confidence 35667778999999999999999999754
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.64 E-value=4.1 Score=39.10 Aligned_cols=115 Identities=16% Similarity=0.253 Sum_probs=71.8
Q ss_pred HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048146 49 YALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDN 127 (401)
Q Consensus 49 ~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~ 127 (401)
.....+|++ ++.+..+-..+.+....-=.......++..=..+.+++.+|+.++.+...++.+.|.-+++.-...++|+
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456776 5555554444444441000000011223344578899999999999999999999999999999999999
Q ss_pred hhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHH
Q 048146 128 LEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVS 174 (401)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 174 (401)
.++.++..+ ...|..++.+..+-.+.. .++.+-..|
T Consensus 304 F~~~~p~~S----------Y~~~v~if~i~sflvan~-GL~~Ii~is 339 (431)
T COG1114 304 FSKLVPKLS----------YKTWVIIFTLISFLVANL-GLEQIIKIS 339 (431)
T ss_pred HHHhccccc----------HHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 999998543 235555555555544422 344443333
No 96
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.67 E-value=4.7 Score=39.42 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=66.2
Q ss_pred HhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 048146 52 SQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEK 130 (401)
Q Consensus 52 ~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~ 130 (401)
.++|.+ ++.+.++-+.+.+....--....+..++..=....+++.+|++++.+..+...+.++-+++.-....+|.+++
T Consensus 229 ~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 229 VWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666 5555555444444443111000000012222346688899999999999999999999999999999999998
Q ss_pred hcccccccccccccccchHHHHHHHHHHHhhhcc
Q 048146 131 LFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWL 164 (401)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 164 (401)
.++ . +.+.+..+..++..+++..
T Consensus 309 ~~~-i----------sY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 309 YVP-L----------SYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred hcC-C----------cHHHHHHHHHHHHHHHHHh
Confidence 875 1 1346666777777777743
No 97
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=84.56 E-value=21 Score=36.28 Aligned_cols=327 Identities=13% Similarity=0.090 Sum_probs=153.0
Q ss_pred CCCchhHHHHHHHHHhhhhhhh-chhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK 100 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 100 (401)
.|+..++.....++.+.+|++. +++|.-..+.|.- ....+.... ......+.......+ .+..+-.|.-++-||+.
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~-~~~~~~~~f~Pvf~~-~~v~~~~eYl~~Rf~~~ 121 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALL-SVLLLGWIFIPVFYR-LGVTTMYEYLEKRFGGR 121 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHH-HHHhhheEEEEEEEe-cCeeehhHHHHHHhccc
Confidence 4566677777777777777765 7899877776653 222211111 111112222222222 36677778888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHH
Q 048146 101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLA 180 (401)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~ 180 (401)
.+....+...++.+.-...++..-+-.+++..... ......+..+++.-......++..-+.=.+....
T Consensus 122 ~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~-----------~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~i 190 (585)
T KOG2349|consen 122 VRYLATLSFILMIFLYLPVDMYAPALAINQVTGIN-----------LYLIVVILGLICVFYTALGGLKAVIWTDVVQTVI 190 (585)
T ss_pred chhhHHHHHHHHHHhheeeeEeehHHHHHHHhccC-----------ceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHH
Confidence 77666666666555433222222222222222100 1111222333333344445665555555555555
Q ss_pred HHHHHHHHHhhhccc--c----------------C-C--------------chhhhhhhhhhccccccccchhhhccccc
Q 048146 181 SITLVACVLWVGAVD--G----------------V-G--------------LPTAVSLYTFCYCGHSVFPTLCNSMKDRR 227 (401)
Q Consensus 181 ~~~~~~~~~~~~~~~--~----------------~-~--------------~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 227 (401)
++..+..+...+..+ + . + +......-.-.++.+++...=+-.+|+-|
T Consensus 191 ml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk 270 (585)
T KOG2349|consen 191 MLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLK 270 (585)
T ss_pred HHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccccHH
Confidence 555555544443211 0 0 0 12223334445666665544333344447
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHhHHHhhhcccch--------hh------hHhc---cCCcchhhHHHHHHHHHhhhh
Q 048146 228 QFSKVLAACFIISTANYGS---MAILGYLMYGDHLK--------SQ------VTLN---LPIRKISSKLAIYTTLINPLT 287 (401)
Q Consensus 228 ~~~~~~~~~~~i~~~~y~~---~g~~gy~~fg~~~~--------~~------il~~---~~~~~~~~~i~~~~~~i~~~~ 287 (401)
+.++.........++.... .|+..|..|.|..+ +| +.+. +|.-+.....+.+...++.++
T Consensus 271 ~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsLS 350 (585)
T KOG2349|consen 271 HAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSLS 350 (585)
T ss_pred HhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 7777766655555555444 45555555543222 12 1122 233322221122222222221
Q ss_pred hhhhhHhhH-HHHHhccCCCC-C---CC-------CchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhh
Q 048146 288 KYAVIITPI-ATALEDTPHLR-K---SR-------PISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPC 355 (401)
Q Consensus 288 ~~p~~~~~~-~~~~~~~~~~~-~---~~-------~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~ 355 (401)
+ .+..+ -...||.++.. | ++ ..-.......+...+++...-.-+....++.|...+...+.+.=+
T Consensus 351 S---~~NS~s~v~~eD~ik~~~k~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~gP~~gvF~Lg 427 (585)
T KOG2349|consen 351 S---IFNSLSTVFLEDYIKPLRKPLSERELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGGPLLGVFVLG 427 (585)
T ss_pred H---hhhhHHHHHHHHHHHhhcCCcChHHHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 1 11111 12233333221 1 11 112233444444555555555567777788888888777776666
Q ss_pred hhHHhhhccc
Q 048146 356 LCYLRINKTA 365 (401)
Q Consensus 356 ~~~l~~~~~~ 365 (401)
+|.=+.+++.
T Consensus 428 mf~pr~N~kg 437 (585)
T KOG2349|consen 428 MFVPRVNEKG 437 (585)
T ss_pred HhccccCCcc
Confidence 6666655543
No 98
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=84.24 E-value=45 Score=32.89 Aligned_cols=304 Identities=12% Similarity=0.052 Sum_probs=153.7
Q ss_pred hhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH
Q 048146 42 VGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAF-GCKGRAMVSILMYLELYFVAVEF 120 (401)
Q Consensus 42 ~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~-G~~~~~~~~~~~~~~~~g~~~~y 120 (401)
+..+.+|....-.|+-|.+-....-.---....++.+..++. +.+|.+|....=+ -++.|.+..+.-++..+.-.++.
T Consensus 60 ASflGiag~I~~~GYdG~~Y~iG~~~Gy~i~~fL~A~~LRk~-GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQ 138 (529)
T COG4147 60 ASFLGIAGLIFISGYDGLIYSIGWTGGYPILLFLIAEYLRKL-GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQ 138 (529)
T ss_pred HhhhchhHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555443332221111111223455555665 8899999766544 45677777777777777777788
Q ss_pred HHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHH----HHHHHhhhcccc
Q 048146 121 LILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITL----VACVLWVGAVDG 196 (401)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~----~~~~~~~~~~~~ 196 (401)
+...+..++.++.-.. ..-.++..+++.........+...+.+.+--+..+.. .+.+.+....++
T Consensus 139 mvGaG~li~~l~gv~~-----------~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~ 207 (529)
T COG4147 139 MVGAGLLISLLLGVPY-----------HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNP 207 (529)
T ss_pred HHhhHHHHHHHhCCCc-----------eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 8888888877775211 1222333444445555667777777666543332221 112222211110
Q ss_pred ---------------------CC-----chhhhhhhhhhccccccccchhhhcc-cc--chhhHHHHHHHHHHHHHHHHH
Q 048146 197 ---------------------VG-----LPTAVSLYTFCYCGHSVFPTLCNSMK-DR--RQFSKVLAACFIISTANYGSM 247 (401)
Q Consensus 197 ---------------------~~-----~~~~~~~~~faf~~~~~~~~i~~~m~-~p--~~~~~~~~~~~~i~~~~y~~~ 247 (401)
++ ..+.++...--..|....|.+.-+.- -| |+.+++...+......+|+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~ 287 (529)
T COG4147 208 NPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILT 287 (529)
T ss_pred chHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 22333332222334455555543332 23 788999999999999999987
Q ss_pred HhHHHhh---hcccchh------------h-----hHh--c---------cCCcchhhHH-H--HHHHHHhhhhhhhhhH
Q 048146 248 AILGYLM---YGDHLKS------------Q-----VTL--N---------LPIRKISSKL-A--IYTTLINPLTKYAVII 293 (401)
Q Consensus 248 g~~gy~~---fg~~~~~------------~-----il~--~---------~~~~~~~~~i-~--~~~~~i~~~~~~p~~~ 293 (401)
-..|+.+ -+++... | +.. | ..+.++...+ + -+...++.....-+..
T Consensus 288 ~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~i 367 (529)
T COG4147 288 PIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVI 367 (529)
T ss_pred HHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHH
Confidence 7777664 2211111 0 000 1 1112222111 1 1111222222222222
Q ss_pred hh--HHHHHhccCCCCCCCCch----hhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHH
Q 048146 294 TP--IATALEDTPHLRKSRPIS----ILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYL 359 (401)
Q Consensus 294 ~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l 359 (401)
.. ..|...+.++.+.+..++ ........++..++++..|+ ++..++|--++..-...+|.+.+=
T Consensus 368 asavsHDiY~~vik~~ase~~~v~vaRi~~v~~~vva~~lgi~~~g--nVaflVa~AF~lAaSa~fPvivlg 437 (529)
T COG4147 368 ASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVAILLGILPPG--NVAFLVALAFALAASANFPVIVLG 437 (529)
T ss_pred HHHHHhHHHHHHhCCCCCccceehhHHHHHHHHHHHHHHheecCCc--cHHHHHHHHHHHHHHcccchhhHH
Confidence 11 234444444443222222 23334444455666666776 777788888888888899988654
No 99
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=76.27 E-value=1e+02 Score=31.98 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=60.2
Q ss_pred HHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHhhhccc-c-------------------CCchhhhhhhhhhcc-c
Q 048146 154 TALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVD-G-------------------VGLPTAVSLYTFCYC-G 212 (401)
Q Consensus 154 ~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~faf~-~ 212 (401)
..=++..++..|..|+..+++.+....-..+++....++..- | .-+-.+...+.|+++ |
T Consensus 222 ~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~ 301 (629)
T KOG3660|consen 222 LAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIG 301 (629)
T ss_pred HHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHH
Confidence 344456677889999999988877666555555555544321 1 015566777777763 3
Q ss_pred cccccchhhhcccc----ch-hhHHHHHHHHHHHHHHHHHHhHHHhhhcccc
Q 048146 213 HSVFPTLCNSMKDR----RQ-FSKVLAACFIISTANYGSMAILGYLMYGDHL 259 (401)
Q Consensus 213 ~~~~~~i~~~m~~p----~~-~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~ 259 (401)
+..+..+.+..|.. || .-....-+......-...+++.|+++.-..+
T Consensus 302 ~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v 353 (629)
T KOG3660|consen 302 FGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGV 353 (629)
T ss_pred HhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444444443322 22 2233344444455555667788888866555
No 100
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=75.06 E-value=89 Score=30.76 Aligned_cols=309 Identities=10% Similarity=-0.053 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHhhhhhhhchhHHHHH-hhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccchh
Q 048146 27 TFLRTCLNGLNVVSGVGILSIPYALS-QGG--WL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGR 102 (401)
Q Consensus 27 s~~~~~~~l~~~~iG~Gil~LP~~~~-~~G--~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~ 102 (401)
..+..-+.+.....|+|=|-.|-... ++| |. +.+...+.++.--.-+.+- . .+. + .++.|+++++.-+ ..
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiia--v-a~~-~-g~~~~l~~rv~~~-f~ 82 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVA--L-AKV-G-GGVDSLSTPIGKV-AG 82 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--H-hhc-C-CCHHHHhhhcchH-HH
Confidence 56778889999999999998887665 477 55 7766666555433332211 1 121 3 5889988876544 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHH
Q 048146 103 AMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASI 182 (401)
Q Consensus 103 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 182 (401)
.+......+.- |-+.+-=...+...+--+..+.++ +......+.++++.+...+++ |.-|-..++.-+-+...+
T Consensus 83 ~~f~~~i~l~I-GP~~aiPRtaavsfEm~i~p~~~~----~~~~~~ifs~iFF~i~~~l~l-~p~klvd~iGK~LTP~LL 156 (439)
T PRK15433 83 VLLATVCYLAV-GPLFATPRTATVSFEVGIAPLTGD----SALPLFIYSLVYFAIVILVSL-YPGKLLDTVGNFLAPLKI 156 (439)
T ss_pred HHHHHHHHHHH-hhccccCCccccchhheeeccCCc----ccHHHHHHHHHHHHHHHHHHc-ChhhHHHHhHHHHHHHHH
Confidence 33322222211 111000000000000000000000 000122445566666666663 344444444444444444
Q ss_pred HHHHHHHhhhccccCC-----------------------chhhhhhhhhhccccccccchhhh-ccccchhh----HHHH
Q 048146 183 TLVACVLWVGAVDGVG-----------------------LPTAVSLYTFCYCGHSVFPTLCNS-MKDRRQFS----KVLA 234 (401)
Q Consensus 183 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~faf~~~~~~~~i~~~-m~~p~~~~----~~~~ 234 (401)
..+..++..+..++.+ -..+++...|+-.. +-.++++ .+|+|+.. ++-.
T Consensus 157 ~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~ii---i~~i~~~G~~~~~~~~k~t~~ag~ 233 (439)
T PRK15433 157 IALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVI---VNAARSRGVTEARLLTRYTVWAGL 233 (439)
T ss_pred HHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4444444333222110 23455566665322 2233332 55555443 4556
Q ss_pred HHHHHHHHHHHHHHhHHHhh---hccc-chhhhHhccCC---cchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC
Q 048146 235 ACFIISTANYGSMAILGYLM---YGDH-LKSQVTLNLPI---RKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLR 307 (401)
Q Consensus 235 ~~~~i~~~~y~~~g~~gy~~---fg~~-~~~~il~~~~~---~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 307 (401)
++.....++|...+..|... +++. ..+.++..... ++....+-.....+..+++---....+-+.+++.++
T Consensus 234 ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-- 311 (439)
T PRK15433 234 MAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-- 311 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Confidence 77777778888888777755 3322 22333333211 111111111222233333333344555555555542
Q ss_pred CCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhh
Q 048146 308 KSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRI 361 (401)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~ 361 (401)
..+.....+..+.++.++. -.+++++++ ....+.++.|..+.+..
T Consensus 312 ---isY~~~v~i~~l~S~~lSn--~G~~~II~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 312 ---LSYRTLVFILGGFSMVVSN--LGLSQLIQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred ---CcHHHHHHHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 2222222333333333332 356667764 56788888998877743
No 101
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=66.64 E-value=1.3e+02 Score=29.18 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=30.9
Q ss_pred CCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 048146 85 LIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLF 132 (401)
Q Consensus 85 ~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~ 132 (401)
..++..|.+++-++|+.++...+...+...++........+.-++.++
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447899999999998877655554444445555555555555555444
No 102
>PRK09950 putative transporter; Provisional
Probab=56.16 E-value=2.3e+02 Score=28.58 Aligned_cols=110 Identities=11% Similarity=-0.061 Sum_probs=59.7
Q ss_pred CCCchhHHHHHHHHHhhhhhhhchh----HHHHHh-------hcH----H-HHHHHHHHHHHHHHHHHHHHH------hh
Q 048146 23 SEGTTFLRTCLNGLNVVSGVGILSI----PYALSQ-------GGW----L-SLIILFLVAVLCWYTGLLLRR------CM 80 (401)
Q Consensus 23 ~~~~s~~~~~~~l~~~~iG~Gil~L----P~~~~~-------~G~----~-gii~~~~~~~~~~~s~~~l~~------~~ 80 (401)
|++-|.++.+.++.++-+|+|++.- |....+ .|- - +.....+=+.+..++.+.+.- ..
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999998753 222111 111 0 222222333333333333222 11
Q ss_pred hhCCCCCChHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 048146 81 DANPLIKTYPDIGDLAFGCK----GRAMVSILMYLELYFVAVEFLILEGDNLEKLF 132 (401)
Q Consensus 81 ~~~~~~~~y~~~~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~ 132 (401)
.++.+..+..+..+-.+|++ .+.++|+..++...+....-+=.....+..-+
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl 216 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGL 216 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12224456788888888754 35677777666655555554444444444433
No 103
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=52.81 E-value=1.9e+02 Score=27.35 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhH
Q 048146 228 QFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVT 264 (401)
Q Consensus 228 ~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il 264 (401)
.-++++..+...+.-.-+.+...||.......++++.
T Consensus 45 ~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~ 81 (340)
T PF12794_consen 45 HTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFS 81 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Confidence 3578999999999999999999999988665544433
No 104
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=52.79 E-value=66 Score=33.36 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=39.7
Q ss_pred hhhhhhchhHHHHH--hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 048146 39 VSGVGILSIPYALS--QGGWL-SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGC 99 (401)
Q Consensus 39 ~iG~Gil~LP~~~~--~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~ 99 (401)
....++......+. +..+. .++.+++..+++..+.+...++.. +.......+.+.+.|-
T Consensus 366 ~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~--~P~~~~~~~sqli~g~ 427 (624)
T PF03169_consen 366 SFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI--NPVSGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC--CcchhhhHHHHHHHHH
Confidence 33445666777773 44555 667777777888888888887755 2456677777777764
No 105
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=52.31 E-value=2.1e+02 Score=27.94 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=63.4
Q ss_pred hhhhhhhHhhHHHHHhccCCCC-------CC---CCc----hhhhHHHHHHHHHHHHhhcc-chhHHHHhhhhhhHHHHH
Q 048146 286 LTKYAVIITPIATALEDTPHLR-------KS---RPI----SILVRTVLVISTVIVAITIP-FFGYVLAFTGSFLGVTVS 350 (401)
Q Consensus 286 ~~~~p~~~~~~~~~~~~~~~~~-------~~---~~~----~~~~~~~~~~~~~~~a~~~p-~~~~i~~l~G~~~~~~~~ 350 (401)
..++|...++.+......++-. .+ +.. |.........++.+.++..| .+....+..|++...+.+
T Consensus 283 ~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga 362 (415)
T COG0814 283 ILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGA 362 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 3788888888887655543321 11 111 55677888888889999988 788888989989889999
Q ss_pred HhhhhhhHHhhhccc-ccchhHHHH
Q 048146 351 ILLPCLCYLRINKTA-RRFGLELML 374 (401)
Q Consensus 351 ~ilP~~~~l~~~~~~-~~~~~~~~~ 374 (401)
-++|++++++-++.. +.+..++..
T Consensus 363 ~i~~~ll~~~p~~~~~~~~~~~~~~ 387 (415)
T COG0814 363 PIIPALLFIKPRKLIYKLPALKVYG 387 (415)
T ss_pred HHHHHHHHHHHHHhcCCCCceeecC
Confidence 999999999875554 234444443
No 106
>PRK09928 choline transport protein BetT; Provisional
Probab=50.79 E-value=3.2e+02 Score=28.66 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=23.8
Q ss_pred cccCCCCchhHHHHHHHHHhhhhhhhch
Q 048146 19 PQQRSEGTTFLRTCLNGLNVVSGVGILS 46 (401)
Q Consensus 19 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~ 46 (401)
++++++.-|.++.+.++.++-+|+|++.
T Consensus 86 ~~d~kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 86 PEQSKPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCCCCCcchHHHHHHHHhhhhhhee
Confidence 3556677899999999999999999974
No 107
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=48.44 E-value=19 Score=22.84 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhhcccch
Q 048146 230 SKVLAACFIISTANYGSMAILGYLMYGDHLK 260 (401)
Q Consensus 230 ~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~ 260 (401)
..+...++.+..++.-+.|..-|.+||...+
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 3466667777777777778888889997544
No 108
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=47.85 E-value=2.7e+02 Score=26.90 Aligned_cols=217 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHhhhhhccccccccCCCCchhHHHHHHHHHhhhhhhhchhHH------HHHhhcHH--HHHHHHHHHHHHHHHHHHHHH
Q 048146 7 EEIMESQNQLQQPQQRSEGTTFLRTCLNGLNVVSGVGILSIPY------ALSQGGWL--SLIILFLVAVLCWYTGLLLRR 78 (401)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~------~~~~~G~~--gii~~~~~~~~~~~s~~~l~~ 78 (401)
|...+-++..-.|+..++ ..-..++.-.--.+|.|++++|. +++..--+ |+++-.++-.+-..+++....
T Consensus 213 ~tl~~iDp~lv~P~~~~~--~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDskaih~gmiigt~vi~il~~gmhl~G~ 290 (473)
T COG4145 213 ETLTTIDPGLVTPQGADD--ILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDSKAIHRGMIIGTIVIAILMLGMHLAGA 290 (473)
T ss_pred HHHHhCCccccCCCCCcc--cccchHHHHHHHHHHHHHhcCcHHHHHHHhccchhHHhcCcchHHHHHHHHHHHHHHhhh
Q ss_pred hhhh-----CCCCCChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhcccccccccccccccchHHHH
Q 048146 79 CMDA-----NPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNL-EKLFPNFGFIISGLKIGGKQGFVL 152 (401)
Q Consensus 79 ~~~~-----~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 152 (401)
..+. .+...-.+.++-+.+.+...-+........-..+.=+.+...++.+ .++..+..++
T Consensus 291 ~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~sstliKdLy~~~~~~-------------- 356 (473)
T COG4145 291 LGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLYLNVRDK-------------- 356 (473)
T ss_pred hhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred HHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHhhhccccCCchhhhhhhhhhccccccc--cchhhhccccchhh
Q 048146 153 LTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVF--PTLCNSMKDRRQFS 230 (401)
Q Consensus 153 ~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~--~~i~~~m~~p~~~~ 230 (401)
.||-+..++++.++++......+..-+.-.. .-+-.-.|||++.+.. +++.-.+.-.+.-.
T Consensus 357 -----------~~~E~ki~~is~~~t~i~~~l~~i~al~Pp~------~iiwlnlfAfggle~~Fl~plvlgLYw~kaNa 419 (473)
T COG4145 357 -----------LKNERKIKRISMIATLIFGALLLIAALNPPE------MIIWLNLFAFGGLEAVFLWPLVLGLYWEKANA 419 (473)
T ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHHHHhhCCcc------eeeeeehhhhcchhhHHHHHHHHHHHhccccH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhc
Q 048146 231 KVLAACFIISTANYGSMAILGYLMYG 256 (401)
Q Consensus 231 ~~~~~~~~i~~~~y~~~g~~gy~~fg 256 (401)
.....++......|+....+++-.++
T Consensus 420 ~ga~aSMi~g~~~y~~l~~~~~ki~~ 445 (473)
T COG4145 420 AGALASMIVGLVLYVLLAFLGIKILG 445 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhe
No 109
>TIGR00909 2A0306 amino acid transporter.
Probab=44.17 E-value=3.1e+02 Score=26.61 Aligned_cols=48 Identities=8% Similarity=-0.091 Sum_probs=40.7
Q ss_pred CChHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 048146 87 KTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPN 134 (401)
Q Consensus 87 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~ 134 (401)
....+..++..|+++..+..+...+..+++..+.+...++.+..+-.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456678888889999999999999999999999999999988877643
No 110
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=40.68 E-value=23 Score=22.14 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhcccch
Q 048146 232 VLAACFIISTANYGSMAILGYLMYGDHLK 260 (401)
Q Consensus 232 ~~~~~~~i~~~~y~~~g~~gy~~fg~~~~ 260 (401)
+...++.+..++-.+.|...|.+||...+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 34556667777777778888889986544
No 111
>CHL00020 psbN photosystem II protein N
Probab=39.99 E-value=21 Score=22.27 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhcccch
Q 048146 232 VLAACFIISTANYGSMAILGYLMYGDHLK 260 (401)
Q Consensus 232 ~~~~~~~i~~~~y~~~g~~gy~~fg~~~~ 260 (401)
+...++.+..++.-+.|..-|.+||...+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 45566777777777777778888997544
No 112
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=39.08 E-value=4e+02 Score=26.41 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=39.2
Q ss_pred hHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 048146 89 YPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPN 134 (401)
Q Consensus 89 y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~ 134 (401)
..++.+..+|+++..+..+......+++..+++...++.+..+-.+
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amard 315 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKD 315 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788889999998889999899999999999998888888776543
No 113
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=38.34 E-value=4.1e+02 Score=26.30 Aligned_cols=46 Identities=9% Similarity=0.121 Sum_probs=39.8
Q ss_pred hHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 048146 89 YPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPN 134 (401)
Q Consensus 89 y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~ 134 (401)
..+..+..+|+++..+..+...+..+++..++....++.+..+-.+
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ard 311 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKD 311 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6678888999999999999999999999999999998888766543
No 114
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=37.37 E-value=1.7e+02 Score=22.87 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhhhhhhhchhHHHHHhh---c-HH-HHHHHHHHHHHH----HHHHHHHHHhhhhCCCCCChHHH
Q 048146 27 TFLRTCLNGLNVVSGVGILSIPYALSQG---G-WL-SLIILFLVAVLC----WYTGLLLRRCMDANPLIKTYPDI 92 (401)
Q Consensus 27 s~~~~~~~l~~~~iG~Gil~LP~~~~~~---G-~~-gii~~~~~~~~~----~~s~~~l~~~~~~~~~~~~y~~~ 92 (401)
.+......+.-..+|+..+.+....... | -. ++.++ +.|+++ .|-.++...+.+.. +..+|.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~ll-ilG~L~fIPG~Y~~~i~y~a~rg~-~Gysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALL-ILGILCFIPGFYHTRIAYYAWRGY-KGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH-HHHHHHHhccHHHHHHHHHHHcCC-CCCCHhhC
Confidence 4666666666667777766666443321 2 22 33222 223333 33344444444444 55677664
No 115
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=33.73 E-value=72 Score=28.25 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhh---------hhhhHHHHHHhhhhhhHHhhhcccccc--hhHHHHHHHHHHHhhHH
Q 048146 317 RTVLVISTVIVAITIPFFGYVLAFT---------GSFLGVTVSILLPCLCYLRINKTARRF--GLELMLIVGILLIGALA 385 (401)
Q Consensus 317 ~~~~~~~~~~~a~~~p~~~~i~~l~---------G~~~~~~~~~ilP~~~~l~~~~~~~~~--~~~~~~~~~~~~~g~~~ 385 (401)
+-++++..+++|..++.++-++.++ |+.+|.-+.++= +..+.-+..+-.. ...++..|+++++|+++
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik--wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK--WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe--eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 3444555566666666666555443 555554444332 1111111111111 12478899999999999
Q ss_pred hhHhhHHH
Q 048146 386 AVVGTYTS 393 (401)
Q Consensus 386 ~v~g~~~~ 393 (401)
..-+++.=
T Consensus 237 ~lr~~i~Y 244 (262)
T KOG4812|consen 237 FLRGFINY 244 (262)
T ss_pred HHHHHHhH
Confidence 99888753
No 116
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=33.69 E-value=5e+02 Score=26.03 Aligned_cols=239 Identities=12% Similarity=0.096 Sum_probs=111.6
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC---CCChHHHH
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGG--WL-SLIILFLVAVLCWYTGLLLRRCMDANPL---IKTYPDIG 93 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G--~~-gii~~~~~~~~~~~s~~~l~~~~~~~~~---~~~y~~~~ 93 (401)
..++|.=++++-+..=....++++-.-.....-+.| |- +++...+.-.++.. .+.-.. .|+ .-+++-..
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~---f~~lns--~~G~~yhIsFpv~s 124 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAI---FLVLNS--RPGSDYHISFPVLS 124 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHH---HHHHcc--CCCcccccceeeee
Confidence 445667788888877777788888777777777777 44 66554443322221 122111 111 12445555
Q ss_pred HHhcccc---hhHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhcccccccccccc---cccchHHHHH-HHHHHHhhh
Q 048146 94 DLAFGCK---GRAMVSILMYLELYFVAVEFLILEGDNLE----KLFPNFGFIISGLK---IGGKQGFVLL-TALIIWPTT 162 (401)
Q Consensus 94 ~~~~G~~---~~~~~~~~~~~~~~g~~~~y~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~pl~ 162 (401)
+..||-+ +..+.++.+.+..+|... -+.++-++ ..+++...-.+.+. .+...+...+ +=++.+|.-
T Consensus 125 R~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 125 RSSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eeehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 5556654 445566666666665431 12222222 22222221111111 1112333332 335555555
Q ss_pred ccccCchhHHHHHHHHHHHHHH-HHHHHhhhcc-cc-------CC----------chhhhhhhhhhc-cccccccchhhh
Q 048146 163 WLRSLGILAYVSAGGVLASITL-VACVLWVGAV-DG-------VG----------LPTAVSLYTFCY-CGHSVFPTLCNS 222 (401)
Q Consensus 163 ~~~~l~~l~~~s~~~~~~~~~~-~~~~~~~~~~-~~-------~~----------~~~~~~~~~faf-~~~~~~~~i~~~ 222 (401)
+. ....++.+-....+..... ...+++.... ++ +. +..++...+=.| ....|.|...+-
T Consensus 202 ~~-~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF 280 (572)
T KOG2466|consen 202 WF-PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRF 280 (572)
T ss_pred ec-cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhh
Confidence 43 3333333332222222222 2222332211 11 10 222222222222 234566777777
Q ss_pred ccccchhhHH----HHHHHHHHHHHHHHHHhHHHhhhcccch--hhhHhcc
Q 048146 223 MKDRRQFSKV----LAACFIISTANYGSMAILGYLMYGDHLK--SQVTLNL 267 (401)
Q Consensus 223 m~~p~~~~~~----~~~~~~i~~~~y~~~g~~gy~~fg~~~~--~~il~~~ 267 (401)
-|+|++..-. +-..+.+...+=++.+..++..||++-- -+++.++
T Consensus 281 ~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 281 AKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred cCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 7777554332 3344444445555566777888997643 3566665
No 117
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=32.57 E-value=95 Score=26.73 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=47.1
Q ss_pred hhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccc---------cchhHHHHHHHHHHHhhHHhhHhhHHHHHHHHH
Q 048146 334 FGYVLAFTGSFLGVTVSILLPCLCYLRINKTAR---------RFGLELMLIVGILLIGALAAVVGTYTSLKQIVT 399 (401)
Q Consensus 334 ~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~---------~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~l~~ 399 (401)
+..-.-+.|++.++-+..++|+...+...+++- .+|.+-....+...+|++.+.++...+...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445667777788888999999999887730 234555667777788888888877777776654
No 118
>PRK11281 hypothetical protein; Provisional
Probab=31.98 E-value=4e+02 Score=29.88 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHhhhcc
Q 048146 228 QFSKVLAACFIISTANYGSMAILGYLMYGD 257 (401)
Q Consensus 228 ~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~ 257 (401)
.-++++..+...+.-..+.+...||+.+..
T Consensus 541 ~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 541 HTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888888888888888899987764
No 119
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=29.48 E-value=6.1e+02 Score=25.70 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=24.1
Q ss_pred cccCCCCchhHHHHHHHHHhhhhhhhchh
Q 048146 19 PQQRSEGTTFLRTCLNGLNVVSGVGILSI 47 (401)
Q Consensus 19 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~L 47 (401)
+++++..-+..+.+.++.++-+|+|++.-
T Consensus 81 ~~~~~PEfs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 81 KDDEKPEFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CCCCCCCcchhHHHHHHHHcccCceeeEe
Confidence 35666778899999999999999999754
No 120
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=29.23 E-value=4.3e+02 Score=26.43 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=33.7
Q ss_pred hHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 048146 89 YPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLF 132 (401)
Q Consensus 89 y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~ 132 (401)
-.+.+++.+|.+. +.+-+...+.++|..-+.+...+..++...
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~a 317 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGA 317 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3578889999877 999999999999987777666666665544
No 121
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=26.71 E-value=4e+02 Score=26.07 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=58.6
Q ss_pred HhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccC----CCCCCCCchhhhHHHHHHHHHHHHhhccchhHHHH
Q 048146 264 TLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTP----HLRKSRPISILVRTVLVISTVIVAITIPFFGYVLA 339 (401)
Q Consensus 264 l~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~ 339 (401)
+.++|.......++.......++..+|+...---+...+.. ...+++..-...-........+.-..+.++-.+++
T Consensus 274 l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vG 353 (411)
T KOG1305|consen 274 LRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVG 353 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 33455554444455555555556666666552222222222 33332222222222222222233344444555555
Q ss_pred hhhhhhHHHHHHhhhhhhHHhhhccc-ccchhHHHHHHHHHHHhhHHhhHhh
Q 048146 340 FTGSFLGVTVSILLPCLCYLRINKTA-RRFGLELMLIVGILLIGALAAVVGT 390 (401)
Q Consensus 340 l~G~~~~~~~~~ilP~~~~l~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~g~ 390 (401)
.+++.+.+++.-.+=-+.-.|..+++ ..-+..++......++|+...+...
T Consensus 354 AT~~~~i~FI~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 405 (411)
T KOG1305|consen 354 ATSSTSISFILPALYYLKASKKKSREPLGALIFLILGVLLSIIGVAVMIYDL 405 (411)
T ss_pred hhhhhhhHHHHHHHhhheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444443333333323333 2334556667777777777666543
No 122
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=26.68 E-value=6.4e+02 Score=25.04 Aligned_cols=111 Identities=12% Similarity=0.008 Sum_probs=58.8
Q ss_pred ccCCCCchhHHHHHHHHHhhhhhhhchh----HHHHH-h--hc---------HH-HHHHHHHHHHHHHHHHHHHHHh---
Q 048146 20 QQRSEGTTFLRTCLNGLNVVSGVGILSI----PYALS-Q--GG---------WL-SLIILFLVAVLCWYTGLLLRRC--- 79 (401)
Q Consensus 20 ~~~~~~~s~~~~~~~l~~~~iG~Gil~L----P~~~~-~--~G---------~~-gii~~~~~~~~~~~s~~~l~~~--- 79 (401)
+++|++-|..+.+.++.++-+|+|++.- |.... + .| .- +.....+=+.+..++.+.+.-.
T Consensus 31 ~d~kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~a 110 (453)
T TIGR00842 31 DDEKPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALA 110 (453)
T ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3456678899999999999999998743 22211 1 11 01 2222333333444444433322
Q ss_pred --hhhCCCCCChHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 048146 80 --MDANPLIKTYPDIGDLAFGCK----GRAMVSILMYLELYFVAVEFLILEGDNLEK 130 (401)
Q Consensus 80 --~~~~~~~~~y~~~~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~ 130 (401)
..++.+..+..+..+-.+|++ .+.++|+..++...+....-+-.....+..
T Consensus 111 Y~~~rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~ 167 (453)
T TIGR00842 111 YFHVRKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINA 167 (453)
T ss_pred HhheecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 212234456777777777754 345666666655555444444333333333
No 123
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=25.89 E-value=1.5e+02 Score=21.68 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=28.9
Q ss_pred cchhhhcccc-chhhHHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhHhccCC
Q 048146 217 PTLCNSMKDR-RQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPI 269 (401)
Q Consensus 217 ~~i~~~m~~p-~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~ 269 (401)
.+..+.-.+| .+..|++.+...+.. +-+.+|++.|-.||..+++....-+.+
T Consensus 31 idFSK~~s~~~~~~wRalSii~FIlG-~vl~lGilifs~y~~C~~~~~~~r~n~ 83 (91)
T PHA02680 31 VDFSKNTSNVTDYVWRALSVTCFIVG-AVLLLGLFVFSMYRKCSGSMPYERLNN 83 (91)
T ss_pred hhhhccCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCCceeecccC
Confidence 4544444455 445565554433333 345667889999996565544444443
No 124
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.66 E-value=1.9e+02 Score=23.53 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=44.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhh
Q 048146 223 MKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITP 295 (401)
Q Consensus 223 m~~p~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~ 295 (401)
.+.+|+.+|.+....-....+..++|+.....+.|+.+ ....++-++|.......++.++.+..+.....|
T Consensus 33 ~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~--~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P 103 (144)
T cd08766 33 VPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG--IPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFP 103 (144)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556777888888888888888888855555554432 222334455665555556666666665544555
No 125
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=24.31 E-value=2e+02 Score=18.98 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHHHhhhcccch
Q 048146 226 RRQFSKVLAACFIISTANYGSMAILGYLMYGDHLK 260 (401)
Q Consensus 226 p~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~ 260 (401)
|+.+.-++ .-..++.++|++.|+.-+..+.+++.
T Consensus 19 ~NsF~fVi-ik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 19 PNSFWFVI-IKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred CchHHHHH-HHHHHHHHHHHHHHHHHhhhccCccc
Confidence 45555444 44567889999999877766665544
No 126
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=23.35 E-value=5e+02 Score=22.61 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=6.3
Q ss_pred ccccccccchhhhccc
Q 048146 210 YCGHSVFPTLCNSMKD 225 (401)
Q Consensus 210 f~~~~~~~~i~~~m~~ 225 (401)
++.+..+....++-++
T Consensus 54 ~G~~~~~~r~~~~~~~ 69 (273)
T PF01943_consen 54 LGLSQAIVRFIAEYKD 69 (273)
T ss_pred hhhHHHHHHHHHHhhh
Confidence 3334444333334333
No 127
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=22.81 E-value=3.8e+02 Score=21.08 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhhhhchhHHHHHhhcHH--HHHHHHHHHHHHHHHHHHHHHh
Q 048146 29 LRTCLNGLNVVSGVGILSIPYALSQGGWL--SLIILFLVAVLCWYTGLLLRRC 79 (401)
Q Consensus 29 ~~~~~~l~~~~iG~Gil~LP~~~~~~G~~--gii~~~~~~~~~~~s~~~l~~~ 79 (401)
++-...-.++.+=.+-++||..++++|.+ +...+.+.+.+..+...+....
T Consensus 60 ~~d~~~FlT~~~vvSg~aLP~VL~H~~~I~~~A~~l~l~g~~ii~~ti~~f~~ 112 (120)
T PF04133_consen 60 CQDFGKFLTGFLVVSGFALPIVLAHAGIIQWGACGLSLAGGVIIYATIIGFFW 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44444445555555567999999999976 6666666666666665544433
No 128
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=22.07 E-value=2.1e+02 Score=23.57 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=35.1
Q ss_pred hhhhhhHHHHHHhhhhhhHHh-hhcccccchhHHHHHHHHHHHhhHHhhHhhHHHHHHHH
Q 048146 340 FTGSFLGVTVSILLPCLCYLR-INKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIV 398 (401)
Q Consensus 340 l~G~~~~~~~~~ilP~~~~l~-~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~l~ 398 (401)
..|+-.+...+|..|-+.+.. ....+ .-...+-...+-+++|+..++.++..+-....
T Consensus 34 ~~~g~~~~~~gF~~Pt~y~~yk~~~~~-gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y 92 (152)
T PF07954_consen 34 NLGGYGGFMAGFFAPTAYYRYKTGAIK-GVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQY 92 (152)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccccc-CCcCCccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888888776664 11111 11111144667788899988888887766554
No 129
>PRK01766 multidrug efflux protein; Reviewed
Probab=21.09 E-value=7.8e+02 Score=23.99 Aligned_cols=30 Identities=7% Similarity=-0.181 Sum_probs=19.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhHHH
Q 048146 223 MKDRRQFSKVLAACFIISTANYGSMAILGY 252 (401)
Q Consensus 223 m~~p~~~~~~~~~~~~i~~~~y~~~g~~gy 252 (401)
-+|+++.++....+..+...+....+...+
T Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T PRK01766 308 AGRTLDARQYAYIGLAVGLGMALLTAIFLV 337 (456)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888777777776666544333
No 130
>PLN02680 carbon-monoxide oxygenase
Probab=20.34 E-value=2.4e+02 Score=25.14 Aligned_cols=73 Identities=4% Similarity=0.094 Sum_probs=46.8
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhh
Q 048146 221 NSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITP 295 (401)
Q Consensus 221 ~~m~~p~~~~~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~ 295 (401)
+..+.+|+.+|.+....-...+...++|+.....+.|+. +...-++-++|.-.....++.++-+..+....+|
T Consensus 70 r~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 70 KTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344556778888888888888888888886655554433 3333334456665566666666666666655555
No 131
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=20.33 E-value=2.5e+02 Score=22.20 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhhhhhhhchhHHHHHhhcHH--HHHHHHHHH
Q 048146 28 FLRTCLNGLNVVSGVGILSIPYALSQGGWL--SLIILFLVA 66 (401)
Q Consensus 28 ~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~--gii~~~~~~ 66 (401)
.+.-....+++.+=.|-+++|..++++|.+ |...+...+
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg 105 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTG 105 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcC
Confidence 344444445555556678999999999987 444455555
No 132
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=20.23 E-value=8.4e+02 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.032 Sum_probs=22.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhHHHh
Q 048146 223 MKDRRQFSKVLAACFIISTANYGSMAILGYL 253 (401)
Q Consensus 223 m~~p~~~~~~~~~~~~i~~~~y~~~g~~gy~ 253 (401)
-||+++.++....+...+..+-..++..-+.
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~ 340 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLL 340 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888877666665443
Done!