BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048152
         (104 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
          Transcription Factor From Antirrhinum Majus
          Length = 93

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
          WS +ENK FE ALAV D+  P RW  VA  V G ++ E+V+KHY IL+ED+++IESGK+
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKV 68


>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin.
 pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin.
 pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin
          Length = 74

 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54
          W + EN  FE+AL+  ++  P RW+ VA  V G ++ E+V+KHY
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHY 65


>pdb|1AUZ|A Chain A, Solution Structure Of Spoiiaa, A Phosphorylatable
          Component Of The System That Regulates Transcription
          Factor Sigma-F Of Bacillus Subtilis, Nmr, 24 Structures
 pdb|1BUZ|A Chain A, Solution Structure Of Spoiiaa, A Phosphorylatable
          Component Of The System That Regulates Transcription
          Factor Sigma-F Of Bacillus Subtilis Nmr, Minimized
          Average Structure
          Length = 116

 Score = 28.9 bits (63), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 21 LALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSV 80
          L + +  E D H  E +   V  +   +D+ +H V+ LEDL F++S  L   L  ++   
Sbjct: 13 LCIRLTGELDHHTAETLKQKVTQSLEKDDI-RHIVLNLEDLSFMDSSGLGVILGRYKQIK 71

Query: 81 HVDCTQSVC 89
           +     VC
Sbjct: 72 QIGGEMVVC 80


>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
          Domain In Human Cdna
          Length = 73

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58
          W+  + KL ELAL          W+ +A  V  +KS ED    Y +L+
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLV 67


>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein
          From Yeast
          Length = 86

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 24 AVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL 61
           + + +D ++WE    + G  KS ED +K Y+ L++ L
Sbjct: 45 GIFNMKDRYKWEAWENLKG--KSQEDAEKEYIALVDQL 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,303,257
Number of Sequences: 62578
Number of extensions: 116037
Number of successful extensions: 348
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 23
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)