BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048152
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1
Length = 81
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLD 70
W+ +ENKLFE ALA D+ P RW VA VGG KSAE+V++HY +L+ D+ IESG+
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGG-KSAEEVRRHYELLIRDVNDIESGRYP 70
Query: 71 H 71
H
Sbjct: 71 H 71
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1
SV=1
Length = 93
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
WS +ENK FE ALAV D+ P RW VA V G ++ E+V+KHY IL+ED+++IESGK+
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKV 68
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
Length = 97
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
W++ +NK+FE ALAV D+ P RW VA VGG K+ E+V++HY IL+EDL IE+G++
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGG-KTVEEVKRHYDILVEDLINIETGRV 69
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
W+ ++NK FE ALA D+ P+RW+ VA +VGG K+ E+V++HY +L++D+ IE+G
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGG-KTTEEVKRHYELLVQDINSIENG 69
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1
Length = 100
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 14 EENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIE 65
++NK+FE ALAV D+ P RW+ VA V G+KSAE+V++HY IL+EDL IE
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVEDLMNIE 65
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1
Length = 77
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 14 EENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGK 68
E+K FE+ALA D+ P RW+ +A VGG KS E+V++HY +LL D+ IESG+
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAVGG-KSTEEVKRHYELLLRDVNDIESGR 67
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1
Length = 101
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
W+ ++NK FE ALAV D+ P RW VA VGG K+ E+ ++ Y +L+ D++ IE+G
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGG-KTPEEAKRQYDLLVRDIESIENG 69
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus
GN=DIVARICATA PE=2 SV=1
Length = 307
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
W+ ENK FE ALAV DE P+RWE VA V G K+ DV + Y L +D+ IE+G
Sbjct: 26 WTAAENKAFENALAVFDENTPNRWERVAERVPG-KTVGDVMRQYKELEDDVSSIEAG 81
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
Length = 621
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59
F W+ EE KL E AL P RWE +A V G ++ +D K Y L+E
Sbjct: 551 FTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPG-RTKKDCMKRYKELVE 601
>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2
PE=2 SV=1
Length = 621
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59
F W+ EE KL E AL P RWE +A V G ++ +D K Y L+E
Sbjct: 551 FTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPG-RTKKDCMKRYKELVE 601
>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1
SV=4
Length = 621
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59
F W+ EE KL E AL P RWE +A V G ++ +D K Y L+E
Sbjct: 551 FTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPG-RTKKDCMKRYKELVE 601
>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2
PE=2 SV=2
Length = 620
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59
W+ EE KL E AL P RWE +A V G +S +D K Y L+E
Sbjct: 553 WTTEEQKLLEQALKTYPVNTPERWEKIAEAVPG-RSKKDCMKRYKELVE 600
>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2
PE=2 SV=1
Length = 621
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59
W+ EE KL E AL P RWE +A V G ++ +D + Y L+E
Sbjct: 554 WTTEEQKLLEQALKTYPVNTPERWEKIAEAVPG-RTKKDCMRRYKELVE 601
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59
W+ EE KL E AL P RWE +A V G ++ +D + Y L+E
Sbjct: 554 WTTEEQKLLEQALKTYPVNTPERWEKIAEAVPG-RTKKDCMRRYKELVE 601
>sp|B1VKD6|RR19_CRYJA 30S ribosomal protein S19, chloroplastic OS=Cryptomeria japonica
GN=rps19 PE=3 SV=1
Length = 97
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPS 79
R +V AM+G T + + + H I FI +G ++HKL EF P+
Sbjct: 37 RSAIVPAMIGHTIAVHNGKSHLPI------FISNGMINHKLGEFVPT 77
>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2
SV=1
Length = 618
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59
W+ EE KL E AL RWE ++ V G +S +D K Y L+E
Sbjct: 551 AAWTTEEQKLLEQALKTYPVSTAERWERISEAVPG-RSKKDCMKRYKELVE 600
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55
P+ GW+ E +L L +++ WE +AA VG +++ ++V +HYV
Sbjct: 64 PEAEGGWTSREEQLL---LDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYV 111
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55
P+ GW+ E +L L +++ WE +AA VG +++ ++V +HYV
Sbjct: 64 PEAEGGWTSREEQLL---LDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYV 111
>sp|A1VFZ7|SAHH_DESVV Adenosylhomocysteinase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=ahcY PE=3 SV=1
Length = 479
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 15 ENKLFELA---LAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
+NK F++ LA+ EQDP RW+ VAA V G H + LE + GKL
Sbjct: 168 DNKEFQIIMDRLALAYEQDPGRWQRVAAKVRGVSEETTTGVHRLYQLE-----QEGKL 220
>sp|Q72EH1|SAHH_DESVH Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=ahcY PE=3
SV=1
Length = 479
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 15 ENKLFELA---LAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
+NK F++ LA+ EQDP RW+ VAA V G H + LE + GKL
Sbjct: 168 DNKEFQIIMDRLALAYEQDPGRWQRVAAKVRGVSEETTTGVHRLYQLE-----QEGKL 220
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57
P+ GW+ E +L L +++ WE +AA VG +++ +V +HYV +
Sbjct: 64 PEAEGGWTSREEQLL---LDAIEQFGFGNWEDMAAHVGASRTPTEVMEHYVTM 113
>sp|Q2JFH2|RS19_FRASC 30S ribosomal protein S19 OS=Frankia sp. (strain CcI3) GN=rpsS
PE=3 SV=1
Length = 93
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPS 79
R V+ M+G T + D +KH + FI G + HKL EF P+
Sbjct: 37 RSTVIPDMLGHTIAVHDGRKHVPV------FITEGMVGHKLGEFAPT 77
>sp|Q0RRR7|RS19_FRAAA 30S ribosomal protein S19 OS=Frankia alni (strain ACN14a) GN=rpsS
PE=3 SV=1
Length = 93
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPS 79
R V+ M+G T + D +KH + FI G + HKL EF P+
Sbjct: 37 RSTVIPDMLGHTIAVHDGRKHVPV------FITEGMVGHKLGEFAPT 77
>sp|Q61712|DNJC1_MOUSE DnaJ homolog subfamily C member 1 OS=Mus musculus GN=Dnajc1 PE=1
SV=1
Length = 552
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 10 GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62
W+ + KL ELAL + RW+ +A V +KS ED Y +L+E +Q
Sbjct: 494 AWTQSQQKLLELALQQYPKGASDRWDKIAKCV-PSKSKEDCIARYKLLVELVQ 545
>sp|A8LC52|RS19_FRASN 30S ribosomal protein S19 OS=Frankia sp. (strain EAN1pec) GN=rpsS
PE=3 SV=1
Length = 93
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPS 79
R V+ M+G T + D +KH + FI G + HKL EF P+
Sbjct: 37 RSTVIPDMLGHTIAVHDGRKHVPV------FITEGMVGHKLGEFAPT 77
>sp|Q96KC8|DNJC1_HUMAN DnaJ homolog subfamily C member 1 OS=Homo sapiens GN=DNAJC1 PE=1
SV=1
Length = 554
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGK 68
W+ + KL ELAL RW+ +A V +KS ED Y +L+E +Q + K
Sbjct: 497 WTQNQQKLLELALQQYPRGSSDRWDKIARCV-PSKSKEDCIARYKLLVELVQKKKQAK 553
>sp|Q47LJ7|RS19_THEFY 30S ribosomal protein S19 OS=Thermobifida fusca (strain YX)
GN=rpsS PE=3 SV=1
Length = 92
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPS 79
R VV M+G T + D +KH + FI + HKL EF P+
Sbjct: 37 RSMVVPEMIGHTIAVHDGRKHVPV------FITEAMIGHKLGEFAPT 77
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 5 PKVFCGW-SWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55
P+ GW S EE L L +++ WE +AA VG +++ ++V HYV
Sbjct: 64 PEAEGGWTSREEQSL----LDAIEQYGFGNWEDMAAHVGASRTPQEVMDHYV 111
>sp|P52776|RR19_PINTH 30S ribosomal protein S19, chloroplastic OS=Pinus thunbergii
GN=rps19 PE=3 SV=1
Length = 92
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 36 VVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSV 80
+V AM+G T + + ++H I + D +DHKL EF P++
Sbjct: 40 IVPAMIGHTIAVHNGREHLPIYVTDRM------VDHKLGEFAPTL 78
>sp|Q85WY8|RR19_PINKO 30S ribosomal protein S19, chloroplastic OS=Pinus koraiensis
GN=rps19 PE=3 SV=1
Length = 92
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 36 VVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSV 80
+V AM+G T + + ++H I + D +DHKL EF P++
Sbjct: 40 IVPAMIGHTIAVHNGREHLPIYVTDRM------VDHKLGEFAPTL 78
>sp|O62953|RR19_PICAB 30S ribosomal protein S19, chloroplastic OS=Picea abies GN=rps19
PE=3 SV=1
Length = 92
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 36 VVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSV 80
+V AM+G T + + ++H I + D +DHKL EF P++
Sbjct: 40 IVPAMIGHTIAVHNGREHLPIYVTDRM------VDHKLGEFAPTL 78
>sp|A0LRM4|RS19_ACIC1 30S ribosomal protein S19 OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=rpsS PE=3 SV=1
Length = 93
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPS 79
R +V M+G T + D +KH + FI + HKL EF P+
Sbjct: 37 RSMIVPEMIGHTIAVHDGRKHVPV------FITEAMIGHKLGEFAPT 77
>sp|Q6ACZ9|RS19_LEIXX 30S ribosomal protein S19 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=rpsS PE=3 SV=1
Length = 93
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPS 79
R +V AM+G T + D +KH + F+ + HKL EF P+
Sbjct: 37 RSMIVPAMLGHTIAVHDGRKHIPV------FVTETMVGHKLGEFAPT 77
>sp|B8DR41|SAHH_DESVM Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain Miyazaki F
/ DSM 19637) GN=ahcY PE=3 SV=1
Length = 479
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 15 ENKLFELA---LAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
+NK F++ LA+ + DP RW+ VAA V G H + LE + GKL
Sbjct: 168 DNKEFQIIMDRLALAYQNDPGRWQRVAARVRGVSEETTTGVHRLYQLE-----QEGKL 220
>sp|P10727|SP2AA_BACSU Anti-sigma F factor antagonist OS=Bacillus subtilis (strain 168)
GN=spoIIAA PE=1 SV=3
Length = 117
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 21 LALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSV 80
L + + E D H E + V + +D+ +H V+ LEDL F++S L L ++
Sbjct: 14 LCIRLTGELDHHTAETLKQKVTQSLEKDDI-RHIVLNLEDLSFMDSSGLGVILGRYKQIK 72
Query: 81 HVDCTQSVC 89
+ VC
Sbjct: 73 QIGGEMVVC 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,631,469
Number of Sequences: 539616
Number of extensions: 1446011
Number of successful extensions: 3533
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3502
Number of HSP's gapped (non-prelim): 39
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)