Query 048152
Match_columns 104
No_of_seqs 110 out of 429
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.3 1.2E-11 2.5E-16 73.8 5.8 45 9-57 2-47 (48)
2 smart00717 SANT SANT SWI3, AD 99.1 4.1E-10 8.9E-15 64.2 5.8 46 9-58 2-47 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 6E-10 1.3E-14 62.7 5.3 44 10-57 1-44 (45)
4 PF13921 Myb_DNA-bind_6: Myb-l 98.9 5E-09 1.1E-13 64.2 5.7 41 11-56 1-41 (60)
5 KOG0724 Zuotin and related mol 98.9 4.1E-09 8.9E-14 83.5 5.7 64 9-72 32-99 (335)
6 PLN03212 Transcription repress 98.4 8.1E-07 1.8E-11 70.1 6.4 67 8-102 25-93 (249)
7 PLN03091 hypothetical protein; 98.2 2E-06 4.4E-11 72.6 5.6 68 8-102 14-82 (459)
8 PLN03212 Transcription repress 97.9 3.2E-05 7E-10 61.2 5.9 49 8-61 78-126 (249)
9 KOG0457 Histone acetyltransfer 97.9 3.5E-05 7.5E-10 65.0 6.2 51 3-57 67-117 (438)
10 TIGR01557 myb_SHAQKYF myb-like 97.8 0.00013 2.7E-09 45.8 6.3 47 8-57 3-53 (57)
11 PLN03091 hypothetical protein; 97.7 9.2E-05 2E-09 62.7 6.2 48 8-60 67-114 (459)
12 COG5259 RSC8 RSC chromatin rem 97.3 0.00027 5.9E-09 60.5 4.5 46 7-57 278-323 (531)
13 KOG0048 Transcription factor, 97.3 0.00036 7.7E-09 53.7 4.6 65 9-101 10-76 (238)
14 KOG4167 Predicted DNA-binding 97.3 0.00048 1E-08 61.7 5.6 50 7-61 618-667 (907)
15 KOG0048 Transcription factor, 97.2 0.0007 1.5E-08 52.1 5.2 43 8-55 62-104 (238)
16 KOG0049 Transcription factor, 96.8 0.0046 9.9E-08 55.3 6.9 68 8-102 253-320 (939)
17 KOG1279 Chromatin remodeling f 96.7 0.0029 6.3E-08 54.4 5.1 47 6-57 251-297 (506)
18 TIGR01557 myb_SHAQKYF myb-like 96.6 0.0013 2.9E-08 41.1 1.8 18 85-102 1-18 (57)
19 COG5114 Histone acetyltransfer 96.5 0.0075 1.6E-07 50.2 6.0 61 3-72 58-118 (432)
20 PF13837 Myb_DNA-bind_4: Myb/S 95.9 0.02 4.3E-07 36.7 4.7 59 9-67 2-73 (90)
21 KOG0051 RNA polymerase I termi 95.8 0.026 5.6E-07 49.7 6.3 73 3-102 379-451 (607)
22 PF13873 Myb_DNA-bind_5: Myb/S 95.6 0.049 1.1E-06 34.5 5.6 56 8-63 2-74 (78)
23 KOG1194 Predicted DNA-binding 95.5 0.026 5.6E-07 48.6 5.0 49 5-58 184-232 (534)
24 KOG0049 Transcription factor, 95.3 0.025 5.4E-07 50.8 4.5 45 9-57 361-405 (939)
25 PLN03142 Probable chromatin-re 95.1 0.04 8.7E-07 51.0 5.4 56 8-67 824-889 (1033)
26 PF09111 SLIDE: SLIDE; InterP 94.8 0.11 2.3E-06 36.8 5.7 56 7-62 48-114 (118)
27 PF00249 Myb_DNA-binding: Myb- 93.0 0.06 1.3E-06 31.5 1.5 14 89-102 3-16 (48)
28 KOG0050 mRNA splicing protein 90.4 0.41 8.9E-06 42.0 4.3 53 9-67 60-112 (617)
29 COG5118 BDP1 Transcription ini 89.8 0.82 1.8E-05 39.1 5.4 46 6-56 363-408 (507)
30 smart00717 SANT SANT SWI3, AD 88.4 0.34 7.4E-06 26.6 1.7 15 88-102 2-16 (49)
31 PF12776 Myb_DNA-bind_3: Myb/S 88.4 0.92 2E-05 29.2 3.9 55 10-64 1-68 (96)
32 KOG0050 mRNA splicing protein 88.3 0.59 1.3E-05 41.1 3.7 47 8-58 7-53 (617)
33 KOG4329 DNA-binding protein [G 87.1 1 2.2E-05 38.2 4.3 46 7-57 276-322 (445)
34 smart00595 MADF subfamily of S 86.6 1.1 2.4E-05 28.6 3.5 57 32-103 28-88 (89)
35 COG5147 REB1 Myb superfamily p 86.4 1.1 2.5E-05 38.8 4.4 51 8-63 72-122 (512)
36 KOG3554 Histone deacetylase co 85.3 0.8 1.7E-05 40.2 2.9 45 9-57 286-330 (693)
37 PF10545 MADF_DNA_bdg: Alcohol 84.8 1.7 3.7E-05 26.8 3.6 31 32-62 27-57 (85)
38 KOG4468 Polycomb-group transcr 79.2 2.8 6E-05 37.7 4.0 52 9-65 89-150 (782)
39 PF11035 SnAPC_2_like: Small n 74.8 15 0.00034 30.6 7.0 55 7-63 20-75 (344)
40 KOG4282 Transcription factor G 72.9 19 0.00041 28.8 7.0 61 8-68 54-123 (345)
41 cd00086 homeodomain Homeodomai 68.8 20 0.00042 20.6 5.9 48 7-56 3-50 (59)
42 TIGR02894 DNA_bind_RsfA transc 68.1 6.5 0.00014 29.5 3.1 48 8-57 4-54 (161)
43 PF00046 Homeobox: Homeobox do 67.9 20 0.00044 20.8 4.8 45 9-55 5-49 (57)
44 PF00674 DUP: DUP family; Int 67.4 7.8 0.00017 26.3 3.2 27 16-42 44-70 (108)
45 PRK13923 putative spore coat p 66.9 9.4 0.0002 28.9 3.8 49 8-58 5-56 (170)
46 PF04504 DUF573: Protein of un 65.4 30 0.00064 23.4 5.7 63 8-70 4-78 (98)
47 KOG2656 DNA methyltransferase 65.0 4.9 0.00011 34.4 2.2 52 9-62 131-185 (445)
48 KOG0051 RNA polymerase I termi 64.4 12 0.00027 33.3 4.6 52 7-59 435-508 (607)
49 PF13404 HTH_AsnC-type: AsnC-t 61.6 12 0.00027 21.5 2.9 37 17-58 6-42 (42)
50 PF04282 DUF438: Family of unk 60.3 7.3 0.00016 25.4 1.9 23 42-65 11-33 (71)
51 COG5147 REB1 Myb superfamily p 59.3 11 0.00025 32.8 3.4 43 8-54 20-62 (512)
52 KOG2009 Transcription initiati 59.0 9.9 0.00022 33.7 3.1 45 7-56 408-452 (584)
53 PF05263 DUF722: Protein of un 58.6 34 0.00073 24.7 5.3 48 11-63 82-129 (130)
54 smart00386 HAT HAT (Half-A-TPR 57.5 15 0.00033 18.0 2.5 24 16-40 7-30 (33)
55 smart00389 HOX Homeodomain. DN 57.3 34 0.00074 19.4 5.8 46 8-55 4-49 (56)
56 cd08307 Death_Pelle Death doma 56.2 12 0.00026 25.6 2.5 21 29-50 19-39 (97)
57 PF01466 Skp1: Skp1 family, di 53.6 15 0.00033 23.4 2.6 41 14-55 12-56 (78)
58 PF00605 IRF: Interferon regul 50.3 2.7 5.8E-05 29.4 -1.5 12 61-72 9-20 (109)
59 PF05524 PEP-utilisers_N: PEP- 45.7 12 0.00027 25.3 1.3 46 13-60 34-79 (123)
60 PF13325 MCRS_N: N-terminal re 45.3 76 0.0017 24.5 5.7 50 8-59 73-127 (199)
61 PLN03162 golden-2 like transcr 44.7 1.1E+02 0.0023 26.6 6.9 54 9-64 238-293 (526)
62 cd00103 IRF Interferon Regulat 44.3 5.4 0.00012 27.7 -0.7 11 61-71 9-19 (107)
63 PRK11179 DNA-binding transcrip 42.9 1E+02 0.0022 21.7 5.7 40 15-59 10-49 (153)
64 COG1522 Lrp Transcriptional re 42.7 42 0.00091 23.0 3.6 30 29-60 20-49 (154)
65 PF08914 Myb_DNA-bind_2: Rap1 42.7 83 0.0018 19.9 4.7 47 10-56 4-55 (65)
66 PRK11169 leucine-responsive tr 42.0 58 0.0012 23.3 4.4 35 21-60 21-55 (164)
67 PF11626 Rap1_C: TRF2-interact 41.2 21 0.00046 23.3 1.8 15 8-22 47-61 (87)
68 PLN03142 Probable chromatin-re 40.9 1E+02 0.0022 29.3 6.7 52 8-62 926-988 (1033)
69 PF01388 ARID: ARID/BRIGHT DNA 40.6 45 0.00098 21.3 3.3 28 32-60 58-90 (92)
70 PF07750 GcrA: GcrA cell cycle 40.4 40 0.00087 24.8 3.4 42 10-57 2-43 (162)
71 smart00426 TEA TEA domain. 39.4 40 0.00086 22.0 2.8 21 8-28 3-23 (68)
72 COG5269 ZUO1 Ribosome-associat 38.5 51 0.0011 27.4 4.0 50 8-57 245-299 (379)
73 PF14775 NYD-SP28_assoc: Sperm 37.9 49 0.0011 20.6 3.0 31 33-64 2-38 (60)
74 PF00887 ACBP: Acyl CoA bindin 37.9 34 0.00073 22.1 2.4 22 40-62 62-83 (87)
75 PF12451 VPS11_C: Vacuolar pro 36.1 29 0.00062 20.8 1.7 25 14-42 19-43 (49)
76 PF09722 DUF2384: Protein of u 36.0 31 0.00067 20.3 1.8 47 20-67 2-53 (54)
77 cd00435 ACBP Acyl CoA binding 35.9 52 0.0011 21.6 3.1 22 40-62 60-81 (85)
78 KOG1194 Predicted DNA-binding 35.6 30 0.00065 30.3 2.3 43 8-56 470-512 (534)
79 cd08308 Death_Tube Death domai 35.3 11 0.00024 27.2 -0.3 34 29-66 20-55 (125)
80 smart00501 BRIGHT BRIGHT, ARID 33.5 91 0.002 20.1 4.0 32 30-61 52-87 (93)
81 PTZ00458 acyl CoA binding prot 32.6 63 0.0014 21.7 3.1 22 40-62 62-83 (90)
82 COG3139 Uncharacterized protei 32.6 60 0.0013 22.2 2.9 34 52-103 13-46 (90)
83 PF03690 UPF0160: Uncharacteri 32.4 51 0.0011 27.0 3.1 31 13-43 163-194 (318)
84 PF06461 DUF1086: Domain of Un 31.8 2.1E+02 0.0046 21.1 6.4 49 11-61 41-89 (145)
85 TIGR02795 tol_pal_ybgF tol-pal 30.1 1.4E+02 0.003 18.4 4.5 42 17-58 60-103 (119)
86 KOG1724 SCF ubiquitin ligase, 29.5 88 0.0019 23.2 3.7 41 14-55 96-140 (162)
87 PLN02620 indole-3-acetic acid- 29.4 2.1E+02 0.0046 25.6 6.6 78 13-98 37-130 (612)
88 KOG2072 Translation initiation 29.2 39 0.00085 31.7 2.1 59 30-90 70-151 (988)
89 PF10124 Mu-like_gpT: Mu-like 28.9 18 0.00038 29.5 -0.1 30 16-50 9-38 (291)
90 PF13432 TPR_16: Tetratricopep 28.4 82 0.0018 18.1 2.8 43 16-59 17-59 (65)
91 PF13428 TPR_14: Tetratricopep 28.3 56 0.0012 18.0 2.0 24 15-39 20-43 (44)
92 COG4281 ACB Acyl-CoA-binding p 28.2 99 0.0022 21.0 3.4 29 33-63 55-83 (87)
93 PF15508 NAAA-beta: beta subun 28.0 62 0.0013 21.3 2.4 27 32-60 16-42 (95)
94 KOG3841 TEF-1 and related tran 27.3 2.2E+02 0.0048 24.6 6.1 53 8-60 76-144 (455)
95 PF10743 Phage_Cox: Regulatory 27.2 81 0.0018 21.5 2.9 37 22-71 4-40 (87)
96 PF01285 TEA: TEA/ATTS domain 27.2 1.3E+02 0.0028 25.7 4.7 51 7-57 48-112 (431)
97 PF07030 DUF1320: Protein of u 26.7 90 0.002 21.7 3.2 28 47-74 84-111 (130)
98 PF15583 Imm41: Immunity prote 26.7 89 0.0019 23.5 3.3 44 11-57 111-154 (158)
99 PF14969 DUF4508: Domain of un 26.5 2.2E+02 0.0049 19.7 5.2 17 10-26 14-30 (98)
100 PF14966 DNA_repr_REX1B: DNA r 26.1 78 0.0017 21.4 2.7 45 17-69 20-64 (97)
101 PF04545 Sigma70_r4: Sigma-70, 25.6 1.4E+02 0.003 16.9 6.0 44 12-62 6-49 (50)
102 TIGR02293 TAS_TIGR02293 putati 25.5 1E+02 0.0022 21.6 3.3 52 17-69 76-132 (133)
103 PF13560 HTH_31: Helix-turn-he 25.4 68 0.0015 19.1 2.1 28 45-72 15-42 (64)
104 PF08784 RPA_C: Replication pr 25.2 1.2E+02 0.0027 19.7 3.5 46 13-60 47-92 (102)
105 PF13174 TPR_6: Tetratricopept 24.3 76 0.0016 15.5 1.9 13 16-28 20-32 (33)
106 PRK10803 tol-pal system protei 23.7 1.8E+02 0.0038 22.8 4.6 43 18-60 202-246 (263)
107 PLN03162 golden-2 like transcr 23.6 67 0.0014 27.8 2.4 20 83-102 233-252 (526)
108 PLN02249 indole-3-acetic acid- 23.0 3.4E+02 0.0074 24.0 6.7 76 13-96 36-127 (597)
109 cd06257 DnaJ DnaJ domain or J- 22.9 1E+02 0.0022 17.2 2.5 18 45-62 12-29 (55)
110 PLN02247 indole-3-acetic acid- 22.5 3.6E+02 0.0078 24.1 6.7 74 13-94 26-114 (606)
111 KOG3331 Mitochondrial/chloropl 22.4 85 0.0018 24.6 2.6 41 57-97 12-73 (213)
112 smart00344 HTH_ASNC helix_turn 21.3 2.4E+02 0.0051 18.1 5.6 40 16-60 5-44 (108)
113 PF13763 DUF4167: Domain of un 21.3 1.1E+02 0.0024 20.5 2.6 18 45-62 33-50 (80)
114 cd01021 GEWL Goose Egg White L 21.2 45 0.00097 24.9 0.8 48 9-58 115-164 (166)
115 COG2461 Uncharacterized conser 20.9 1.4E+02 0.003 25.6 3.7 39 13-66 3-41 (409)
116 cd07216 Pat17_PNPLA8_PNPLA9_li 20.5 1.2E+02 0.0026 23.7 3.2 26 36-62 54-81 (309)
117 PF00325 Crp: Bacterial regula 20.4 1.7E+02 0.0037 16.1 3.5 25 34-60 5-29 (32)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.28 E-value=1.2e-11 Score=73.76 Aligned_cols=45 Identities=22% Similarity=0.433 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVIL 57 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L 57 (104)
..||.+|+.+|..|+.+|+.+ +|.+||..|| | ||..+|+.||..+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~-Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGG-RTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSS-STHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCC-CCHHHHHHHHHhh
Confidence 469999999999999999875 8999999999 7 9999999999876
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.08 E-value=4.1e-10 Score=64.16 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
..||.+|+.+|..+++.|+. .+|..||..+|+ ||..+|+.+|..+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~~-rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELPG-RTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCC-CCHHHHHHHHHHHc
Confidence 57999999999999999974 469999999998 99999999999874
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.04 E-value=6e-10 Score=62.74 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 10 GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
.||.+|+++|..++..|+. ..|..||..+|+ ||..+|+.+|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~-rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPG-RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCC-CCHHHHHHHHHHh
Confidence 5999999999999999974 469999999999 9999999999876
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.89 E-value=5e-09 Score=64.22 Aligned_cols=41 Identities=17% Similarity=0.463 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 11 WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
||.+|+.+|..+...|.. .|.+||..||. ||..+|+.||..
T Consensus 1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~-Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN----DWKKIAEHLGN-RTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-----HHHHHHHSTT-S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHHCc-CCHHHHHHHHHH
Confidence 999999999999999953 59999999976 999999999998
No 5
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.1e-09 Score=83.48 Aligned_cols=64 Identities=33% Similarity=0.469 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCC----CCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 048152 9 CGWSWEENKLFELALAVVDEQ----DPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHK 72 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~----~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~ 72 (104)
+.|+.+..+.|++||+.|..+ ++++|++++.+||+-++..+++.+|..++.||..|++|++++|
T Consensus 32 ~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p 99 (335)
T KOG0724|consen 32 SLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFP 99 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCcc
Confidence 559999999999999999865 8999999999999878999999999999999999999999877
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.39 E-value=8.1e-07 Score=70.14 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc-CCCCCHHHHHHHHHHHHH-hhhhhcCCCCCCccccCCCccccCCc
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV-GGTKSAEDVQKHYVILLE-DLQFIESGKLDHKLAEFQPSVHVDCT 85 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v-pg~KS~~eV~~ryk~L~~-dV~~IEsG~v~~~~~~~~~~~~~erk 85 (104)
...||.|||.+|-.++++|.. .+|..||..+ +| ||..+|+.||...+. +|. +
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~g-RT~KQCReRW~N~L~P~I~---------------------k- 78 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLL-RCGKSCRLRWMNYLRPSVK---------------------R- 78 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcC-CCcchHHHHHHHhhchhcc---------------------c-
Confidence 456999999999999999963 4799999988 47 999999999986642 111 1
Q ss_pred ccccCCHHHHHHHhhhc
Q 048152 86 QSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 86 kg~pWTeeEhrlFL~~~ 102 (104)
-|||+||-.++|.+.
T Consensus 79 --gpWT~EED~lLlel~ 93 (249)
T PLN03212 79 --GGITSDEEDLILRLH 93 (249)
T ss_pred --CCCChHHHHHHHHHH
Confidence 279999999888653
No 7
>PLN03091 hypothetical protein; Provisional
Probab=98.23 E-value=2e-06 Score=72.59 Aligned_cols=68 Identities=16% Similarity=0.323 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ 86 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk 86 (104)
...||.|||++|..++.+|+. ..|.+||..++ | ||..+|+.||...+.- + +.+
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~g-RT~KQCRERW~NyLdP------~--------------IkK-- 67 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQ-RCGKSCRLRWINYLRP------D--------------LKR-- 67 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccC-cCcchHhHHHHhccCC------c--------------ccC--
Confidence 456999999999999999975 46999999885 6 9999999999754311 1 111
Q ss_pred cccCCHHHHHHHhhhc
Q 048152 87 SVCWTDEDNNLLLQLD 102 (104)
Q Consensus 87 g~pWTeeEhrlFL~~~ 102 (104)
-|||.||-+++|.+.
T Consensus 68 -gpWT~EED~lLLeL~ 82 (459)
T PLN03091 68 -GTFSQQEENLIIELH 82 (459)
T ss_pred -CCCCHHHHHHHHHHH
Confidence 279999999998764
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.87 E-value=3.2e-05 Score=61.15 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV 61 (104)
...||.||+.++-.+.+.|.. +|.+||..||| ||-.+|+.||..++.-.
T Consensus 78 kgpWT~EED~lLlel~~~~Gn----KWs~IAk~LpG-RTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGN----RWSLIAGRIPG-RTDNEIKNYWNTHLRKK 126 (249)
T ss_pred cCCCChHHHHHHHHHHHhccc----cHHHHHhhcCC-CCHHHHHHHHHHHHhHH
Confidence 467999999999888888763 79999999999 99999999999776543
No 9
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.86 E-value=3.5e-05 Score=64.95 Aligned_cols=51 Identities=25% Similarity=0.479 Sum_probs=46.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
+||.....||.+|.-+|-.|+.+|.-|. |+-||..|+. ||.+||+.||...
T Consensus 67 s~~i~~~~WtadEEilLLea~~t~G~GN---W~dIA~hIGt-Ktkeeck~hy~k~ 117 (438)
T KOG0457|consen 67 SFPILDPSWTADEEILLLEAAETYGFGN---WQDIADHIGT-KTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCCc---HHHHHHHHcc-cchHHHHHHHHHH
Confidence 5788889999999999999999997665 9999999986 9999999999764
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.77 E-value=0.00013 Score=45.79 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchH---HHHHHHcCCCC-CHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRW---EVVAAMVGGTK-SAEDVQKHYVIL 57 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRW---ekIA~~vpg~K-S~~eV~~ryk~L 57 (104)
.-.||.||...|..||..|+.+. | .+|++.+...+ |..+|+.|++.-
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~---~a~pk~I~~~~~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPD---WATPKRILELMVVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCc---ccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34699999999999999997533 8 99999886546 999999999864
No 11
>PLN03091 hypothetical protein; Provisional
Probab=97.69 E-value=9.2e-05 Score=62.74 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
...||.||++++-...+.|+. +|.+||..||| ||..+|+.||..++.-
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn----KWskIAk~LPG-RTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN----RWSQIAAQLPG-RTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc----chHHHHHhcCC-CCHHHHHHHHHHHHHH
Confidence 457999999999999999863 89999999999 9999999999987654
No 12
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.33 E-value=0.00027 Score=60.48 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
....||.+|.-+|-.++..|. |-|++||..|+. ||++||+-||-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg----DdW~kVA~HVgt-Kt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG----DDWDKVARHVGT-KTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh----hhHHHHHHHhCC-CCHHHHHHHHHcC
Confidence 445799999999999999996 369999999987 9999999999877
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.31 E-value=0.00036 Score=53.70 Aligned_cols=65 Identities=17% Similarity=0.342 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHH-HHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYV-ILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ 86 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk-~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk 86 (104)
.+||.|||..|-.-+.+|..+ +|-.||...| | |+-..|+.|.- +|-=||+ +
T Consensus 10 GpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~-R~GKSCRlRW~NyLrP~ik---------------------r-- 62 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLR-RCGKSCRLRWTNYLRPDLK---------------------R-- 62 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCC-ccchHHHHHhhcccCCCcc---------------------C--
Confidence 789999999999999999765 7999999999 8 99999998863 4433333 2
Q ss_pred cccCCHHHHHHHhhh
Q 048152 87 SVCWTDEDNNLLLQL 101 (104)
Q Consensus 87 g~pWTeeEhrlFL~~ 101 (104)
-+||+||.++.+.|
T Consensus 63 -g~fT~eEe~~Ii~l 76 (238)
T KOG0048|consen 63 -GNFSDEEEDLIIKL 76 (238)
T ss_pred -CCCCHHHHHHHHHH
Confidence 26999999998876
No 14
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=97.28 E-value=0.00048 Score=61.70 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV 61 (104)
.+..||..|.++|.+||.+|.+| +.+|+..|+| ||+.+|.+.|-.-..|+
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~-KtVaqCVeyYYtWKK~~ 667 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKD----FIFVQKMVKS-KTVAQCVEYYYTWKKIM 667 (907)
T ss_pred CcccccHHHHHHHHHHHHHhccc----HHHHHHHhcc-ccHHHHHHHHHHHHHhc
Confidence 46789999999999999999885 6999999999 99999999996554444
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.21 E-value=0.0007 Score=52.10 Aligned_cols=43 Identities=26% Similarity=0.479 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...||.||+.+.-++=+.|.- ||..||..||| ||-.+|+.|..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GN----rWs~IA~~LPG-RTDNeIKN~Wn 104 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGN----RWSLIAGRLPG-RTDNEVKNHWN 104 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCc----HHHHHHhhCCC-cCHHHHHHHHH
Confidence 456999999999999999864 79999999999 99999987764
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.75 E-value=0.0046 Score=55.32 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS 87 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg 87 (104)
...||.||+..| .|||.-++ ---|++||+.++..||.=+|..+|+.-+.-+.. +
T Consensus 253 k~~WS~EE~E~L-~AiA~A~~--~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~e---------------------k-- 306 (939)
T KOG0049|consen 253 KEHWSNEEVEKL-KALAEAPK--FVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSE---------------------K-- 306 (939)
T ss_pred hhccChHHHHHH-HHHHhccc--cccHHHHHHHhCCCcchHHHHHHHHHHHHHHHh---------------------h--
Confidence 456999999877 46665543 235999999998779999999999988777763 1
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
-|||||.+-+-+++
T Consensus 307 -eWsEEed~kL~alV 320 (939)
T KOG0049|consen 307 -EWSEEEDTKLIALV 320 (939)
T ss_pred -hcchhhhHHHHHHH
Confidence 39999998887765
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.69 E-value=0.0029 Score=54.44 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
+....||.+|.=+|-.|+-+|.. -|.+||..|++ ||.+||+-||-.|
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d----dW~kVa~hVg~-ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD----DWNKVADHVGT-KSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc----cHHHHHhccCC-CCHHHHHHHHHhc
Confidence 44567999999999999999964 59999999987 9999999999887
No 18
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.60 E-value=0.0013 Score=41.11 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.2
Q ss_pred cccccCCHHHHHHHhhhc
Q 048152 85 TQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 85 kkg~pWTeeEhrlFL~~~ 102 (104)
++...||+|||.+||.+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai 18 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAV 18 (57)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 356789999999999874
No 19
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.48 E-value=0.0075 Score=50.18 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 048152 3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHK 72 (104)
Q Consensus 3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~ 72 (104)
+.|-....|+.+|.-+|-.++....-|. |+-||..|+. |+.+||+.||-.+. +||...|+|
T Consensus 58 sypI~~e~WgadEEllli~~~~TlGlGN---W~dIadyiGs-r~kee~k~HylK~y-----~es~~ypl~ 118 (432)
T COG5114 58 SYPIGEEGWGADEELLLIECLDTLGLGN---WEDIADYIGS-RAKEEIKSHYLKMY-----DESKYYPLP 118 (432)
T ss_pred CccccCCCcCchHHHHHHHHHHhcCCCc---HHHHHHHHhh-hhhHHHHHHHHHHH-----hhccccccc
Confidence 3455567799999999999999886654 9999999986 99999999998763 344444443
No 20
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.91 E-value=0.02 Score=36.70 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhh------cC--CCCC--chHHHHHHHcC---CCCCHHHHHHHHHHHHHhhhhhcCC
Q 048152 9 CGWSWEENKLFELALAV------VD--EQDP--HRWEVVAAMVG---GTKSAEDVQKHYVILLEDLQFIESG 67 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~------~p--~~~p--dRWekIA~~vp---g~KS~~eV~~ryk~L~~dV~~IEsG 67 (104)
..||.+|..+|-.+... |. .... .-|+.||..+. -.+|+.+|+.+++.|..+.+.+-..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 46999999999988877 21 1222 37999999873 2389999999999999999877543
No 21
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=95.80 E-value=0.026 Score=49.65 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCcccc
Q 048152 3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHV 82 (104)
Q Consensus 3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~ 82 (104)
+|....+.||.+|+..+-..-++... .|..|+.+| | +.+.+|+.|+...+. .| . .
T Consensus 379 ~FE~~rg~wt~ee~eeL~~l~~~~g~----~W~~Ig~~l-g-r~P~~crd~wr~~~~------~g-------~------~ 433 (607)
T KOG0051|consen 379 PFENKRGKWTPEEEEELKKLVVEHGN----DWKEIGKAL-G-RMPMDCRDRWRQYVK------CG-------S------K 433 (607)
T ss_pred ccccccCCCCcchHHHHHHHHHHhcc----cHHHHHHHH-c-cCcHHHHHHHHHhhc------cc-------c------c
Confidence 45557788999999998888777754 799999999 5 999999999887632 11 0 0
Q ss_pred CCcccccCCHHHHHHHhhhc
Q 048152 83 DCTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 83 erkkg~pWTeeEhrlFL~~~ 102 (104)
++.-+||-||-..+|+++
T Consensus 434 --~~r~~Ws~eEe~~Llk~V 451 (607)
T KOG0051|consen 434 --RNRGAWSIEEEEKLLKTV 451 (607)
T ss_pred --cccCcchHHHHHHHHHHH
Confidence 123379999999999876
No 22
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.63 E-value=0.049 Score=34.53 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---C----------CCchHHHHHHHc----CCCCCHHHHHHHHHHHHHhhhh
Q 048152 8 FCGWSWEENKLFELALAVVDE---Q----------DPHRWEVVAAMV----GGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~---~----------~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~dV~~ 63 (104)
...||.+|..+|-..+..|+. + ...-|+.||..| |+.||..+|++.|..|...++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999998742 2 135799999887 3359999999999999887753
No 23
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=95.48 E-value=0.026 Score=48.58 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
-.....||.||.-+||+|+..|.+ ++.+|-+++|- ||...+++.|-...
T Consensus 184 ~~~~d~WT~Ed~vlFe~aF~~~GK----~F~kIrq~LP~-rsLaSlvqyYy~~K 232 (534)
T KOG1194|consen 184 TEFPDEWTAEDIVLFEQAFQFFGK----DFHKIRQALPH-RSLASLVQYYYSWK 232 (534)
T ss_pred CCCcccchHHHHHHHHHHHHHhcc----cHHHHHHHccC-ccHHHHHHHHHHHH
Confidence 334567999999999999999987 67999999999 99999999887653
No 24
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.32 E-value=0.025 Score=50.80 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
..||.+||-+|-.|.+.|... -|-+|-+.||| ||-.+|+.||-..
T Consensus 361 g~wt~~ED~~L~~AV~~Yg~k---dw~k~R~~vPn-RSdsQcR~RY~nv 405 (939)
T KOG0049|consen 361 GRWTDQEDVLLVCAVSRYGAK---DWAKVRQAVPN-RSDSQCRERYTNV 405 (939)
T ss_pred CCCCCHHHHHHHHHHHHhCcc---chhhHHHhcCC-ccHHHHHHHHHHH
Confidence 459999999999999999753 49999999999 9999999999754
No 25
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.11 E-value=0.04 Score=50.95 Aligned_cols=56 Identities=25% Similarity=0.403 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh----------hhhhcCC
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED----------LQFIESG 67 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d----------V~~IEsG 67 (104)
-+.||+-+-..|-+|.++|..+ --++||..|.| ||.+||++.++..-+- +..||.|
T Consensus 824 f~~w~~~~f~~f~~~~~~~gr~---~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~ 889 (1033)
T PLN03142 824 FSTWSRRDFNAFIRACEKYGRN---DIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERG 889 (1033)
T ss_pred cCcccHHHHHHHHHHHHHhCHh---HHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 4569999999999999999864 37999999998 9999999766555332 4566666
No 26
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.78 E-value=0.11 Score=36.85 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCC-----------CCCHHHHHHHHHHHHHhhh
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGG-----------TKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg-----------~KS~~eV~~ryk~L~~dV~ 62 (104)
....+|.+||+.+-..+..|.-++++-|++|-..|-. ++|+.++.+|...|+.-|.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~ 114 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE 114 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999987631 2899999999999976653
No 27
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=93.01 E-value=0.06 Score=31.48 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.9
Q ss_pred cCCHHHHHHHhhhc
Q 048152 89 CWTDEDNNLLLQLD 102 (104)
Q Consensus 89 pWTeeEhrlFL~~~ 102 (104)
+||+||+.+|+.++
T Consensus 3 ~Wt~eE~~~l~~~v 16 (48)
T PF00249_consen 3 PWTEEEDEKLLEAV 16 (48)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999875
No 28
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.43 E-value=0.41 Score=42.05 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG 67 (104)
..||.+|+..+-.+...+| ..|--||..| | +|..+|.+||..|+.....-..+
T Consensus 60 tews~eederlLhlakl~p----~qwrtIa~i~-g-r~~~qc~eRy~~ll~~~~s~~~~ 112 (617)
T KOG0050|consen 60 TEWSREEDERLLHLAKLEP----TQWRTIADIM-G-RTSQQCLERYNNLLDVYVSYHYH 112 (617)
T ss_pred hhhhhhHHHHHHHHHHhcC----CccchHHHHh-h-hhHHHHHHHHHHHHHHHHhhhcc
Confidence 4699999987766655554 4799999999 5 99999999999998877655443
No 29
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=89.77 E-value=0.82 Score=39.07 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
+....||..|...|=+||.++.-+ +--|+..+|. |+..+|+..|..
T Consensus 363 ~~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~-R~RkqIKaKfi~ 408 (507)
T COG5118 363 KGALRWSKKEIEKFYKALSIWGTD----FSLISSLFPN-RERKQIKAKFIK 408 (507)
T ss_pred CCCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCc-hhHHHHHHHHHH
Confidence 346679999999999999999753 6899999999 999999999874
No 30
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=88.45 E-value=0.34 Score=26.60 Aligned_cols=15 Identities=40% Similarity=0.802 Sum_probs=13.0
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.+||++|..+|+.+.
T Consensus 2 ~~Wt~~E~~~l~~~~ 16 (49)
T smart00717 2 GEWTEEEDELLIELV 16 (49)
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999864
No 31
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=88.40 E-value=0.92 Score=29.24 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHhhc------C-CC--CCchHHHHHHHcC----CCCCHHHHHHHHHHHHHhhhhh
Q 048152 10 GWSWEENKLFELALAVV------D-EQ--DPHRWEVVAAMVG----GTKSAEDVQKHYVILLEDLQFI 64 (104)
Q Consensus 10 ~WT~eE~k~fE~ALa~~------p-~~--~pdRWekIA~~vp----g~KS~~eV~~ryk~L~~dV~~I 64 (104)
.||.++.+.|-.+|... | .+ ++..|..|+..+- ...|..+|+.||+.|..+-..+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~ 68 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIW 68 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHH
Confidence 49999999998888653 2 11 2568999998763 2257899999999998887665
No 32
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=88.26 E-value=0.59 Score=41.07 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
...|+..|+.++.-|..+|+. ..|-+||+.++- ||+.+|+.+|.+-+
T Consensus 7 ggvwrntEdeilkaav~kyg~---nqws~i~sll~~-kt~rqC~~rw~e~l 53 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGK---NQWSRIASLLNR-KTARQCKARWEEWL 53 (617)
T ss_pred cceecccHHHHHHHHHHHcch---HHHHHHHHHHhh-cchhHHHHHHHHHh
Confidence 467999999999999999975 469999999997 99999999998653
No 33
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=87.14 E-value=1 Score=38.24 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHH-HHHcCCCCCHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVV-AAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekI-A~~vpg~KS~~eV~~ryk~L 57 (104)
..+.||.+|-+.||..|..|.++. ..| |..|+. ||+-||+..|-.-
T Consensus 276 ~l~~wsEeEcr~FEegl~~yGKDF----~lIr~nkvrt-RsvgElVeyYYlW 322 (445)
T KOG4329|consen 276 DLSGWSEEECRNFEEGLELYGKDF----HLIRANKVRT-RSVGELVEYYYLW 322 (445)
T ss_pred ccccCCHHHHHHHHHHHHHhcccH----HHHHhccccc-chHHHHHHHHHHh
Confidence 457899999999999999999854 444 567988 9999999887544
No 34
>smart00595 MADF subfamily of SANT domain.
Probab=86.63 E-value=1.1 Score=28.59 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=37.8
Q ss_pred chHHHHHHHcCCCCCHHHHHHHHHHHHHhhh----hhcCCCCCCccccCCCccccCCcccccCCHHHHHHHhhhcc
Q 048152 32 HRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ----FIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDI 103 (104)
Q Consensus 32 dRWekIA~~vpg~KS~~eV~~ryk~L~~dV~----~IEsG~v~~~~~~~~~~~~~erkkg~pWTeeEhrlFL~~~~ 103 (104)
.-|..||..++ .|+++|+.+.+.|..-.. .+..+... + . ....|.=-++=.||.-.|
T Consensus 28 ~aW~~Ia~~l~--~~~~~~~~kw~~LR~~y~~e~~r~~~~~~~----~------~---~~~~w~~~~~m~FL~~~~ 88 (89)
T smart00595 28 KAWEEIAEELG--LSVEECKKRWKNLRDRYRRELKRLQNGKSG----G------G---KKSKWEYFDRLSFLRPVI 88 (89)
T ss_pred HHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHHHHHHHHhhcc----C------C---CCCCchhhHhhhhHHHhc
Confidence 37999999994 799999999999954432 23222110 0 0 123588878888886544
No 35
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=86.37 E-value=1.1 Score=38.85 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
...||.+|++.+-.+=..++. +|.-||..+|| +|...|..+|..+.++...
T Consensus 72 ~~~~~~eed~~li~l~~~~~~----~wstia~~~d~-rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 72 KKNWSEEEDEQLIDLDKELGT----QWSTIADYKDR-RTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred cccccHHHHHHHHHHHHhcCc----hhhhhccccCc-cchHHHHHHHHHHhhhhhc
Confidence 456999999887766666543 59999999999 9999999999999888776
No 36
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=85.30 E-value=0.8 Score=40.16 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
.+||..|.-+||.||.+|.+|..| -=+..+|= ||..++++.|-..
T Consensus 286 EEWSasEanLFEeALeKyGKDFnd---IrqdfLPW-KSl~sIveyYYmw 330 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKDFND---IRQDFLPW-KSLTSIVEYYYMW 330 (693)
T ss_pred hhccchhhHHHHHHHHHhcccHHH---HHHhhcch-HHHHHHHHHHHHH
Confidence 469999999999999999997654 33567888 9999999888655
No 37
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=84.85 E-value=1.7 Score=26.83 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=26.0
Q ss_pred chHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 32 HRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 32 dRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
+-|+.||..+++.-++++|+++.+.|.....
T Consensus 27 ~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~ 57 (85)
T PF10545_consen 27 EAWQEIARELGKEFSVDDCKKRWKNLRDRYR 57 (85)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 4699999999864689999999999976554
No 38
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=79.17 E-value=2.8 Score=37.73 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHH----------HHHcCCCCCHHHHHHHHHHHHHhhhhhc
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVV----------AAMVGGTKSAEDVQKHYVILLEDLQFIE 65 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekI----------A~~vpg~KS~~eV~~ryk~L~~dV~~IE 65 (104)
..||..|...|=.||.+|.++ +|+| -..+-- ||..+|+.||-.++.-+....
T Consensus 89 taWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~-Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 89 TAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQS-KTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred cccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhh-hhhHHHHHHHHHHHHHHHhhh
Confidence 469999999999999999985 5888 455655 999999999988876665444
No 39
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=74.83 E-value=15 Score=30.55 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcC-CCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 7 VFCGWSWEENKLFELALAVVD-EQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p-~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
....||.-|.+.+-++|..-- ...||.=+ |+..|+| ||..|+...-+.|..-|.+
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd~ae-l~~~l~~-Rs~aEI~~fl~~LK~rvar 75 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPDAAE-LAKELPG-RSEAEIRDFLQQLKGRVAR 75 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcCHHH-HHhhccC-cCHHHHHHHHHHHHHHHHH
Confidence 356799999999999998642 33456545 9999999 9999999999999777643
No 40
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=72.94 E-value=19 Score=28.76 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHhhcC----CC--CCchHHHHHHH---cCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 048152 8 FCGWSWEENKLFELALAVVD----EQ--DPHRWEVVAAM---VGGTKSAEDVQKHYVILLEDLQFIESGK 68 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p----~~--~pdRWekIA~~---vpg~KS~~eV~~ryk~L~~dV~~IEsG~ 68 (104)
...|+.+|-+.|-.+..... .+ .-.-|+.||.. .+..||..+|+.+++.|..-.+....+.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~ 123 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK 123 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 47899999999988876532 11 13469999983 4445999999999999988887765554
No 41
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=68.84 E-value=20 Score=20.56 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
....+|.++...||..+...+--+...=+.||..+ | -|..+|..=|..
T Consensus 3 ~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~-~-l~~~qV~~WF~n 50 (59)
T cd00086 3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL-G-LTERQVKIWFQN 50 (59)
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-C-cCHHHHHHHHHH
Confidence 34568999999999999997755666779999999 5 999999876653
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.15 E-value=6.5 Score=29.54 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCC--CchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVV-DEQD--PHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~-p~~~--pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
-..||.+||.+|-...-.| -.|. -.-++-++..+ + ||..-|-=|+...
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~-RTsAACGFRWNs~ 54 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-N-RTAAACGFRWNAY 54 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-c-ccHHHhcchHHHH
Confidence 3579999999997776665 3333 35789999999 4 8888765444444
No 43
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=67.87 E-value=20 Score=20.79 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++.+.|+..+...+--+.+.-+.||..+ | -|..+|..=|.
T Consensus 5 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l-~-l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQENPYPSKEEREELAKEL-G-LTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH-T-SSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccccccccccccc-c-ccccccccCHH
Confidence 458999999999999987666677889999999 5 99999986664
No 44
>PF00674 DUP: DUP family; InterPro: IPR001142 A number of uncharacterised integral membrane proteins from yeast contain an internal duplication due to duplicated genes. Duplicated copies of genes may be classified in two types of cluster organisation. The first type includes genes sharing a significant level of identity in the amino acid sequences of their predicted protein product. They are recovered on two different chromosomes, transcribed in the same orientation and the distance between them is conserved. The second type of cluster is based on one gene unit tandemly repeated. This duplication is itself repeated elsewhere in the genome. The basic gene unit is recovered many times in the genome and is a component of a multigene family of unknown function. These organisations in clusters of genes suggest a 'Lego organisation' of the yeast chromosomes []. The proteins belonging to this family are of unknown function.
Probab=67.36 E-value=7.8 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcC
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVG 42 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vp 42 (104)
.+++...++.=|...+..|+.||..+-
T Consensus 44 ~kfl~eIi~~~P~~d~~~Wd~IA~~mN 70 (108)
T PF00674_consen 44 MKFLKEIIEVKPGVDMKKWDIIASRMN 70 (108)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 677888888888888999999999873
No 45
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=66.94 E-value=9.4 Score=28.85 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-CC--CchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDE-QD--PHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~-~~--pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
...||.|++.++...+..|-. |. -+-.+-++..+. +|+..|--||...+
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~v 56 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVV 56 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHH
Confidence 356999999999888887743 22 367888889994 89999999995553
No 46
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=65.38 E-value=30 Score=23.39 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCC--C------CCchHHHHHHHcCCCCCHHHHHHHHHHHHHh----hhhhcCCCCC
Q 048152 8 FCGWSWEENKLFELALAVVDE--Q------DPHRWEVVAAMVGGTKSAEDVQKHYVILLED----LQFIESGKLD 70 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~--~------~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d----V~~IEsG~v~ 70 (104)
...||.+|.-.+-++|+.|-. | +..-.+.|...+.-.=|..|+......|..- +..+..|..+
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k~~~g~~~ 78 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKKSKNGKDP 78 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhhcccCcCC
Confidence 346999999999999998821 2 1223455555554434677777666666433 3445556554
No 47
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=64.97 E-value=4.9 Score=34.36 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCC---CCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 9 CGWSWEENKLFELALAVVDEQ---DPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~---~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
..||.+|-.-|=..-..|+-- --|||++-. .+..||++|++.||=..+..+.
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq--~~~sRTvEdLKeRyY~v~r~l~ 185 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQ--YKKSRTVEDLKERYYSVCRKLL 185 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhh--ccccccHHHHHHHHHHHHHHHH
Confidence 569999977666666778752 246666533 6656999999999988876664
No 48
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=64.45 E-value=12 Score=33.33 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHh-------hc------------CCC---CCchHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALA-------VV------------DEQ---DPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa-------~~------------p~~---~pdRWekIA~~vpg~KS~~eV~~ryk~L~~ 59 (104)
....||.+|...|-++.. +| |.+ .+=.|.-|++.++. |+..+|+.+|..|+-
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~T-R~~~qCr~Kw~kl~~ 508 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGT-RSRIQCRYKWYKLTT 508 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcC-CCcchHHHHHHHHHh
Confidence 356799999887777662 23 222 33489999998866 999999988887753
No 49
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=61.61 E-value=12 Score=21.51 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 17 KLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 17 k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
+.+-.+|..- ..--|..||+.+ | -|...|.+|.+.|.
T Consensus 6 ~~Il~~Lq~d---~r~s~~~la~~l-g-lS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 6 RKILRLLQED---GRRSYAELAEEL-G-LSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHH----TTS-HHHHHHHH-T-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCccHHHHHHHH-C-cCHHHHHHHHHHhC
Confidence 3333444443 445689999999 5 99999999998873
No 50
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=60.27 E-value=7.3 Score=25.44 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhc
Q 048152 42 GGTKSAEDVQKHYVILLEDLQFIE 65 (104)
Q Consensus 42 pg~KS~~eV~~ryk~L~~dV~~IE 65 (104)
-| .+.++|++.|+.++.+|..+|
T Consensus 11 ~G-~~~e~vk~~F~~~~~~Vs~~E 33 (71)
T PF04282_consen 11 EG-EDPEEVKEEFKKLFSDVSASE 33 (71)
T ss_pred CC-CCHHHHHHHHHHHHCCCCHHH
Confidence 35 899999999999999887653
No 51
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=59.28 E-value=11 Score=32.83 Aligned_cols=43 Identities=14% Similarity=0.384 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ry 54 (104)
.+.|+..||..+-.+-..|. |.-|.+||+.+.- ++..+|..|-
T Consensus 20 ~gsw~~~EDe~l~~~vk~l~---~nnws~vas~~~~-~~~kq~~~rw 62 (512)
T COG5147 20 GGSWKRTEDEDLKALVKKLG---PNNWSKVASLLIS-STGKQSSNRW 62 (512)
T ss_pred CCCCCCcchhHHHHHHhhcc---cccHHHHHHHhcc-cccccccchh
Confidence 34799999988877776663 4459999999986 8999998775
No 52
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=59.02 E-value=9.9 Score=33.74 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
....||..+-.+|..||..+..+. --|++..|+ |+..+|+..|..
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~----slis~l~p~-R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDF----SLISNLFPL-RDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccc----ccccccccc-ccHHHHHHHHhh
Confidence 356799999999999999997644 579999999 999999998874
No 53
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=58.62 E-value=34 Score=24.66 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 11 WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
.+.++.++|. ..|....-.-|..||..+- .+...|++.|+...++|.+
T Consensus 82 l~de~k~Ii~---lry~~r~~~TW~~IA~~l~--i~erta~r~~~~fK~~i~~ 129 (130)
T PF05263_consen 82 LIDEEKRIIK---LRYDRRSRRTWYQIAQKLH--ISERTARRWRDRFKNDIYR 129 (130)
T ss_pred hCHHHHHHHH---HHHcccccchHHHHHHHhC--ccHHHHHHHHHHHHHHhcC
Confidence 4555555553 3455555567999999994 9999999999999998863
No 54
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.54 E-value=15 Score=17.96 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHH
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAM 40 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~ 40 (104)
.++|+++|..+| ..++-|-.-+..
T Consensus 7 r~i~e~~l~~~~-~~~~~W~~y~~~ 30 (33)
T smart00386 7 RKIYERALEKFP-KSVELWLKYAEF 30 (33)
T ss_pred HHHHHHHHHHCC-CChHHHHHHHHH
Confidence 568999999998 688888766543
No 55
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=57.30 E-value=34 Score=19.45 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...+|.++..+|+..+...+--+...=+.||..+ | -|..+|..=|.
T Consensus 4 r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~-~-l~~~qV~~WF~ 49 (56)
T smart00389 4 RTSFTPEQLEELEKEFQKNPYPSREEREELAAKL-G-LSERQVKVWFQ 49 (56)
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-C-cCHHHHHHhHH
Confidence 3458999999999999987754556678999999 5 88888876554
No 56
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=56.18 E-value=12 Score=25.62 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=16.2
Q ss_pred CCCchHHHHHHHcCCCCCHHHH
Q 048152 29 QDPHRWEVVAAMVGGTKSAEDV 50 (104)
Q Consensus 29 ~~pdRWekIA~~vpg~KS~~eV 50 (104)
|+.+.|.++|..+++ =|..+|
T Consensus 19 D~~~~W~~LA~~i~~-ys~~~v 39 (97)
T cd08307 19 DTDNVWEELAFVMMG-YSNDDV 39 (97)
T ss_pred CCcCcHHHHHHHHhc-CCHHHH
Confidence 455899999999986 666554
No 57
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=53.59 E-value=15 Score=23.42 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCCCCc----hHHHHHHHcCCCCCHHHHHHHHH
Q 048152 14 EENKLFELALAVVDEQDPH----RWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 14 eE~k~fE~ALa~~p~~~pd----RWekIA~~vpg~KS~~eV~~ryk 55 (104)
+.+.+|+-..|.+--+-+. --..||..+-| ||+++++..|.
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~g-ks~eeir~~fg 56 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKG-KSPEEIRKYFG 56 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT-S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcC-CCHHHHHHHcC
Confidence 3456777777764333222 34788999999 99999998874
No 58
>PF00605 IRF: Interferon regulatory factor transcription factor; InterPro: IPR001346 Viral infections induce the expression of type I interferons (IFN-alpha and IFN-beta) genes. The induction is due to the transcriptional activation of the IFN genes. Interferon regulatory factor I (IRF-1) is one of the transcription factors responsible for that activation. IRF-1 binds to an upstream regulatory cis element, known as the interferon consensus sequence (ICS), which is found in the promoters of type I IFN and IFN-inducible MHC class I genes. Interferon regulatory factor 2 (IRF-2) is a protein that also interacts with the ICS, but that does not function as an activator; rather, it suppresses the function of IRF-1 under certain circumstances []. These proteins share a highly conserved N-terminal domain of about 100 amino acid residues which is involved in DNA-binding and which contain five conserved tryptophans. This domain is known as a 'tryptophan pentad repeat' or a 'tryptophan cluster' and is also present in: Interferon consensus sequence binding protein (ICSBP) [], a transcription factor expressed predominantly in lymphoid tissues and induced by IFN-gamma that also binds to the ICS. Transcriptional regulator ISGF3 gamma subunit []. ISGF3 is responsible for the initial stimulation of interferon-alpha-responsive genes. It recognises and binds to the interferon-stimulated response element (ISRE) within the regulatory sequences of target genes. Interferon regulatory factor 3 (IRF-3). Interferon regulatory factor 4 (IRF-4) which binds to the interferon- stimulated response element (ISRE) of the MHC class I promoter. Interferon regulatory factor 5 (IRF-5). Interferon regulatory factor 6 (IRF-6). Interferon regulatory factor 7 (IRF-7). Gamma Herpesviruses vIRF-1, -2 and -3, proteins with homology to the cellular transcription factors of the IRF family []. Neither vIRF-1 nor vIRF-2 bind to DNA with the same specificity as cellular IRFs, indicating that if vIRFs are DNA-binding proteins, their binding has a pattern distinct from that of the cellular IRFs. Whether vIRF-3 can bind DNA with the same specificity as cellular IRFs is not known. The IRF tryptophan pentad repeat DNA-binding domain has an alpha/beta architecture comprising a cluster of three alpha-helices (alpha1-alpha3) flanked on one side by a mixed four-stranded beta-sheet (beta1-beta4). It forms a helix-turn-helix motif that binds to ISRE consensus sequences found in target promoters. Three of the tryptophan residues contact DNA by recognising a GAAA sequence []. This entry represents the IRF tryptophan pentad repeat DNA-binding domain.; GO: 0000975 regulatory region DNA binding; PDB: 2IRF_H 1IRF_A 1IRG_A 2DLL_A 3QU3_C 2PI0_D 2O6G_G 1T2K_A 2O61_A 3QU6_C ....
Probab=50.32 E-value=2.7 Score=29.37 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=9.2
Q ss_pred hhhhcCCCCCCc
Q 048152 61 LQFIESGKLDHK 72 (104)
Q Consensus 61 V~~IEsG~v~~~ 72 (104)
|..||||.+|.-
T Consensus 9 ~~~i~sg~ypGL 20 (109)
T PF00605_consen 9 IEQIDSGRYPGL 20 (109)
T ss_dssp HHHHHHTCSTTS
T ss_pred HHHHhcCCCCCc
Confidence 567899999733
No 59
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=45.73 E-value=12 Score=25.33 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 13 WEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
..|...|++||.+.-......-+++...++. ... ++...|..|++|
T Consensus 34 ~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~-~~a-~If~ah~~~L~D 79 (123)
T PF05524_consen 34 EAEIERLEQALEKAREELEQLAERAESKLGE-EEA-AIFEAHLMMLED 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHS-SCT-HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHH-HHHHHHHHHhcC
Confidence 5789999999998765444444555556654 444 899999999888
No 60
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=45.34 E-value=76 Score=24.49 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc-----CCCCCHHHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV-----GGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v-----pg~KS~~eV~~ryk~L~~ 59 (104)
...||.+|+.+|-+.-.... .+.+.+++|=..= ++ ||+..+..||..|..
T Consensus 73 kalfS~~EE~lL~~v~s~~~-p~le~Fq~LL~~n~~vFh~s-RTak~L~~HW~lmkq 127 (199)
T PF13325_consen 73 KALFSKEEEQLLGTVASSSQ-PSLETFQELLDKNRSVFHPS-RTAKSLQDHWRLMKQ 127 (199)
T ss_pred cCCCCHHHHHHHHhhhhccC-CcHHHHHHHHHhChhhhccc-cCHHHHHHHHHHHHH
Confidence 45799999999988655443 3557888875543 46 999999999997643
No 61
>PLN03162 golden-2 like transcription factor; Provisional
Probab=44.72 E-value=1.1e+02 Score=26.57 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHhhcC--CCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhh
Q 048152 9 CGWSWEENKLFELALAVVD--EQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFI 64 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p--~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~I 64 (104)
-.||.+=.+.|-.|+.+.. +-+|.+=-++= .|+| -|.+.|+.|.+....-.+++
T Consensus 238 LrWTpELH~rFVeAV~qLG~dKATPK~ILelM-nV~G-LTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 238 VDWTPELHRRFVHAVEQLGVEKAFPSRILELM-GVQC-LTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred ccCCHHHHHHHHHHHHHhCcCccchHHHHHHc-CCCC-cCHHHHHHHHHHHHHhcccc
Confidence 3599999999999999875 44666554443 3888 99999999887765555543
No 62
>cd00103 IRF Interferon Regulatory Factor (IRF); also known as tryptophan pentad repeat. The family of IRF transcription factors is important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. The IRF family is characterized by a unique 'tryptophan cluster' DNA-binding region. Viral IRFs bind to cellular IRFs; block type I and II interferons and host IRF-mediated transcriptional activation.
Probab=44.27 E-value=5.4 Score=27.66 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=9.0
Q ss_pred hhhhcCCCCCC
Q 048152 61 LQFIESGKLDH 71 (104)
Q Consensus 61 V~~IEsG~v~~ 71 (104)
|..|+||.+|.
T Consensus 9 ~~~i~sg~ypG 19 (107)
T cd00103 9 VEQVDSGTYPG 19 (107)
T ss_pred HHHhccCCCCC
Confidence 56789999984
No 63
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=42.90 E-value=1e+02 Score=21.67 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048152 15 ENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 15 E~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~ 59 (104)
-|+.+=.+|.+-+. -.|..||+.+ | -|...|.+|++.|.+
T Consensus 10 ~D~~Il~~Lq~d~R---~s~~eiA~~l-g-lS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 10 LDRGILEALMENAR---TPYAELAKQF-G-VSPGTIHVRVEKMKQ 49 (153)
T ss_pred HHHHHHHHHHHcCC---CCHHHHHHHH-C-cCHHHHHHHHHHHHH
Confidence 34445555655443 4589999999 5 999999999999854
No 64
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=42.70 E-value=42 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=24.8
Q ss_pred CCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 29 QDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 29 ~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
+.+..+..||..| | .|...|.+|-+.|.++
T Consensus 20 d~r~~~~eia~~l-g-lS~~~v~~Ri~~L~~~ 49 (154)
T COG1522 20 DARISNAELAERV-G-LSPSTVLRRIKRLEEE 49 (154)
T ss_pred hCCCCHHHHHHHH-C-CCHHHHHHHHHHHHHC
Confidence 3446689999999 5 9999999998888654
No 65
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=42.66 E-value=83 Score=19.86 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHhhcCC-----CCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 10 GWSWEENKLFELALAVVDE-----QDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 10 ~WT~eE~k~fE~ALa~~p~-----~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
.-|.+||.++-.-++.+.. ....-|..+|+.-|.+.|-...+.||..
T Consensus 4 ~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K 55 (65)
T PF08914_consen 4 PFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLK 55 (65)
T ss_dssp ---HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5689999999999976532 2346899999999933999999999954
No 66
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=42.04 E-value=58 Score=23.30 Aligned_cols=35 Identities=14% Similarity=-0.062 Sum_probs=27.2
Q ss_pred HHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 21 LALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 21 ~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
.+|..- ..-.|..||+.| | -|..-|.+|++.|.++
T Consensus 21 ~~Lq~d---~R~s~~eiA~~l-g-lS~~tv~~Ri~rL~~~ 55 (164)
T PRK11169 21 NELQKD---GRISNVELSKRV-G-LSPTPCLERVRRLERQ 55 (164)
T ss_pred HHhccC---CCCCHHHHHHHH-C-cCHHHHHHHHHHHHHC
Confidence 355544 344589999999 5 9999999999999653
No 67
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=41.16 E-value=21 Score=23.31 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=8.7
Q ss_pred CCCCCHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELA 22 (104)
Q Consensus 8 ~~~WT~eE~k~fE~A 22 (104)
...||.++|..|...
T Consensus 47 ~GiWT~eDD~~L~~~ 61 (87)
T PF11626_consen 47 PGIWTPEDDEMLRSG 61 (87)
T ss_dssp TT---HHHHHHHTS-
T ss_pred CCCcCHHHHHHHHcC
Confidence 446999999999544
No 68
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=40.88 E-value=1e+02 Score=29.28 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCC-----------CCCHHHHHHHHHHHHHhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGG-----------TKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg-----------~KS~~eV~~ryk~L~~dV~ 62 (104)
...+|.+||+.+-.+|.+|.-+ +|++|-..|-. +||+.++.+|+..|+.-|.
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~---~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~~ 988 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYG---NWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLIE 988 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccc---hHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHHH
Confidence 4569999999999999998753 49999776621 2899999999999987774
No 69
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=40.61 E-value=45 Score=21.30 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=20.9
Q ss_pred chHHHHHHHcCCCCC-----HHHHHHHHHHHHHh
Q 048152 32 HRWEVVAAMVGGTKS-----AEDVQKHYVILLED 60 (104)
Q Consensus 32 dRWekIA~~vpg~KS-----~~eV~~ryk~L~~d 60 (104)
..|..||..++- -+ ...++++|...+.+
T Consensus 58 ~~W~~va~~lg~-~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 58 KKWREVARKLGF-PPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp TTHHHHHHHTTS--TTSCHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHHhCC-CCCCCcHHHHHHHHHHHHhHh
Confidence 469999999965 33 47899999877543
No 70
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=40.39 E-value=40 Score=24.80 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 10 GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
.||.|....|.+..+. |.. =-.||..|+| -|..-|+-+..-|
T Consensus 2 ~Wtde~~~~L~~lw~~---G~S--asqIA~~lg~-vsRnAViGk~hRl 43 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE---GLS--ASQIARQLGG-VSRNAVIGKAHRL 43 (162)
T ss_pred CCCHHHHHHHHHHHHc---CCC--HHHHHHHhCC-cchhhhhhhhhcc
Confidence 5999999988777654 222 2789999997 9999999887665
No 71
>smart00426 TEA TEA domain.
Probab=39.37 E-value=40 Score=22.01 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCC
Q 048152 8 FCGWSWEENKLFELALAVVDE 28 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~ 28 (104)
...|+.+=..+|..||+.||+
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~ 23 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPP 23 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCc
Confidence 467999999999999999985
No 72
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=38.47 E-value=51 Score=27.43 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCC-CchHHHHHHHcCCC----CCHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQD-PHRWEVVAAMVGGT----KSAEDVQKHYVIL 57 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~-pdRWekIA~~vpg~----KS~~eV~~ryk~L 57 (104)
...|+++.-..++.+++.+.+.. ..+|+-+|++..|. |+..||++..+.+
T Consensus 245 ~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~ 299 (379)
T COG5269 245 IRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKM 299 (379)
T ss_pred HhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 45799999999999999987654 68999999888661 2344555544443
No 73
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=37.92 E-value=49 Score=20.63 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred hHHHHHHHcCCCCCH------HHHHHHHHHHHHhhhhh
Q 048152 33 RWEVVAAMVGGTKSA------EDVQKHYVILLEDLQFI 64 (104)
Q Consensus 33 RWekIA~~vpg~KS~------~eV~~ryk~L~~dV~~I 64 (104)
-|+++|..||+ .+. +...++|...+.|-..+
T Consensus 2 yW~~~~~vip~-~~~~~W~~L~~~l~rY~~vL~~R~~l 38 (60)
T PF14775_consen 2 YWERLANVIPD-EKIRLWDALENFLKRYNKVLLDRAAL 38 (60)
T ss_pred HHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999997 543 34456666655554443
No 74
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=37.91 E-value=34 Score=22.12 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.2
Q ss_pred HcCCCCCHHHHHHHHHHHHHhhh
Q 048152 40 MVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 40 ~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.+.| .|.+|.++.|-.|++.+.
T Consensus 62 ~l~g-ms~~eA~~~Yi~~v~~~~ 83 (87)
T PF00887_consen 62 ALKG-MSKEEAMREYIELVEELI 83 (87)
T ss_dssp TTTT-THHHHHHHHHHHHHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHH
Confidence 4677 999999999999998874
No 75
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=36.13 E-value=29 Score=20.77 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHcC
Q 048152 14 EENKLFELALAVVDEQDPHRWEVVAAMVG 42 (104)
Q Consensus 14 eE~k~fE~ALa~~p~~~pdRWekIA~~vp 42 (104)
++..+|..+| ..+.||..-||..++
T Consensus 19 ~~~d~F~~~L----~~s~D~F~vIaeyfG 43 (49)
T PF12451_consen 19 DQHDLFFKQL----EESEDRFSVIAEYFG 43 (49)
T ss_pred hcHHHHHHHH----HhCCCCchhHHHHHc
Confidence 4567888888 678899999999995
No 76
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=36.02 E-value=31 Score=20.28 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=27.4
Q ss_pred HHHHhhcC-CCCCchH-HHHHHHcCCCCCHHHHHHH---HHHHHHhhhhhcCC
Q 048152 20 ELALAVVD-EQDPHRW-EVVAAMVGGTKSAEDVQKH---YVILLEDLQFIESG 67 (104)
Q Consensus 20 E~ALa~~p-~~~pdRW-ekIA~~vpg~KS~~eV~~r---yk~L~~dV~~IEsG 67 (104)
..|...|. .+.-.+| ..-...++| +++.|++.. +....+-+.+|+.|
T Consensus 2 ~~a~~vfgd~~~a~~Wl~~p~~~l~g-~~Plel~~t~~G~~~V~~~L~~~~~G 53 (54)
T PF09722_consen 2 KQAEEVFGDEDKARRWLRTPNPALGG-RTPLELLRTEAGAERVLDYLDRIEYG 53 (54)
T ss_pred hHHHHHHCCHHHHHHHHHChHHHhCC-CCHHHHHcChHHHHHHHHHHHHHHcC
Confidence 34555661 1223477 445566888 999999873 33334445666665
No 77
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=35.93 E-value=52 Score=21.61 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.3
Q ss_pred HcCCCCCHHHHHHHHHHHHHhhh
Q 048152 40 MVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 40 ~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.++| .|.+|.++.|-.|++.+.
T Consensus 60 ~l~~-ms~~eA~~~YV~~~~~l~ 81 (85)
T cd00435 60 SLKG-MSKEDAMKAYIAKVEELI 81 (85)
T ss_pred HcCC-CCHHHHHHHHHHHHHHHh
Confidence 4677 999999999999998874
No 78
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=35.57 E-value=30 Score=30.33 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
...||.++-+ ++.-|+- --+-++.||+.+.. ||+++++++|-+
T Consensus 470 ~~~wSp~e~s----~ircf~~-y~~~fe~ia~l~~t-ktp~Q~~~fy~~ 512 (534)
T KOG1194|consen 470 NYGWSPEEKS----AIRCFHW-YKDNFELIAELMAT-KTPEQIKKFYMD 512 (534)
T ss_pred cCCCCCcccc----cccCchh-hccchHHHHHHhcC-CCHHHHHHHhcC
Confidence 3469999888 4555542 23458999999988 999999999954
No 79
>cd08308 Death_Tube Death domain of Tube. Death domains (DDs) similar to the DD in the protein Tube from Drosophila melanogaster. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and also in mediating innate immune response to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Some members of this subfamily contain a C-terminal kinase domain, like Pelle, in addition to the DD. Tube has no counterpart in vertebrates. It contains an N-terminal DD and a C-terminal region with five copies of the Tube repeat, an 8-amino acid motif. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (D
Probab=35.29 E-value=11 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=21.7
Q ss_pred CCCchHHHHHHHcCCCCCHHH--HHHHHHHHHHhhhhhcC
Q 048152 29 QDPHRWEVVAAMVGGTKSAED--VQKHYVILLEDLQFIES 66 (104)
Q Consensus 29 ~~pdRWekIA~~vpg~KS~~e--V~~ryk~L~~dV~~IEs 66 (104)
+..+.|.+++..|| |...+ ...+|. .++|+.||.
T Consensus 20 D~~d~Wk~L~~~Ip--~~~~~~~~~~~Y~--~~hv~~ie~ 55 (125)
T cd08308 20 DINDGWKKLMAIIP--SDDDDFNNLAKYN--AEHFKLIEQ 55 (125)
T ss_pred CccccHHHHHHhcC--CcccccccccccC--HHHHHHHHH
Confidence 56689999999998 44444 334442 235666654
No 80
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=33.52 E-value=91 Score=20.14 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=23.4
Q ss_pred CCchHHHHHHHcCCCC----CHHHHHHHHHHHHHhh
Q 048152 30 DPHRWEVVAAMVGGTK----SAEDVQKHYVILLEDL 61 (104)
Q Consensus 30 ~pdRWekIA~~vpg~K----S~~eV~~ryk~L~~dV 61 (104)
...+|..||..++-.. ....++.+|...+...
T Consensus 52 ~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 52 KDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred CCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 3578999999996522 2568899998876544
No 81
>PTZ00458 acyl CoA binding protein; Provisional
Probab=32.60 E-value=63 Score=21.72 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.3
Q ss_pred HcCCCCCHHHHHHHHHHHHHhhh
Q 048152 40 MVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 40 ~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.++| .|.++.+++|-.|++.+.
T Consensus 62 ~l~~-ms~~eA~~~YI~l~~~l~ 83 (90)
T PTZ00458 62 SIEN-LNREDAKKRYVEIVTELF 83 (90)
T ss_pred HcCC-CCHHHHHHHHHHHHHHHh
Confidence 3577 999999999999998875
No 82
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.60 E-value=60 Score=22.21 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhcCCCCCCccccCCCccccCCcccccCCHHHHHHHhhhcc
Q 048152 52 KHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDI 103 (104)
Q Consensus 52 ~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg~pWTeeEhrlFL~~~~ 103 (104)
+-|+.| +.+||-|.-| .|++=|+|+..+-|++++
T Consensus 13 EiYQrL---~~AvElGKWP---------------dG~~LtqeQke~clQaVm 46 (90)
T COG3139 13 EIYQRL---STAVELGKWP---------------DGVALTQEQKENCLQAVM 46 (90)
T ss_pred HHHHHH---HHHHHhcCCC---------------CCCcCCHHHHHHHHHHHH
Confidence 457766 4567788775 378899999999999886
No 83
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=32.39 E-value=51 Score=26.99 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHH-cCC
Q 048152 13 WEENKLFELALAVVDEQDPHRWEVVAAM-VGG 43 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~~~pdRWekIA~~-vpg 43 (104)
.++++.|++|+..-...-.++=..+... +|.
T Consensus 163 ~~~~~~F~~A~~l~~~~f~~~v~~~~~~wlpA 194 (318)
T PF03690_consen 163 EDEDERFEKAMELAGEEFENRVKYYAKSWLPA 194 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 5799999999987654444444555555 554
No 84
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=31.77 E-value=2.1e+02 Score=21.14 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 11 WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV 61 (104)
.+.-|.++|-+|+-.|.-+.- -|.-+...+.+ ||.++++..-.....-+
T Consensus 41 Fn~rQR~~Fln~vMR~G~~~f-~~~w~~~~Lr~-Ks~~ei~aY~~LFm~HL 89 (145)
T PF06461_consen 41 FNPRQRKAFLNAVMRYGMGAF-DWKWFVPRLRG-KSEKEIRAYGSLFMRHL 89 (145)
T ss_pred cCHHHHHHHHHHHHHHCcCcc-cchHHhhhhcc-ccHHHHHHHHHHHHHHh
Confidence 678899999999999987433 57778888999 99998876655443333
No 85
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.06 E-value=1.4e+02 Score=18.39 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=16.6
Q ss_pred HHHHHHHhhcCCC--CCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 17 KLFELALAVVDEQ--DPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 17 k~fE~ALa~~p~~--~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
+.|+.++..+|.+ .+.-|..++.+.-.....++....|..++
T Consensus 60 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 60 KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3444444444432 13334444333322223344444444443
No 86
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=29.55 E-value=88 Score=23.24 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCCCc----hHHHHHHHcCCCCCHHHHHHHHH
Q 048152 14 EENKLFELALAVVDEQDPH----RWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 14 eE~k~fE~ALa~~p~~~pd----RWekIA~~vpg~KS~~eV~~ryk 55 (104)
++.-+|+-.+|.+--+-+. .=..||..+-| ||++|++..|.
T Consensus 96 d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikg-ktpeEir~~f~ 140 (162)
T KOG1724|consen 96 DQGTLFDLILAANYLDIKGLLDLTCKTVANMIKG-KTPEEIREIFN 140 (162)
T ss_pred CHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHcc-CCHHHHHHHcC
Confidence 4668999999987655553 34789999999 99999998864
No 87
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=29.40 E-value=2.1e+02 Score=25.62 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcCC---------CCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCC-----CCccccCCC
Q 048152 13 WEENKLFELALAVVDE---------QDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL-----DHKLAEFQP 78 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~---------~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v-----~~~~~~~~~ 78 (104)
.-|++.|...|.+.-. ..--.++...+.||= .-|+.|..+|.+|-.|.- +.|+.....
T Consensus 37 ~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv--------~~Yedl~pyI~Ri~~Ge~s~vL~~~pi~~F~~ 108 (612)
T PLN02620 37 EVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPV--------ITYEDIQPDINRIANGDTSPILCSKPISEFLT 108 (612)
T ss_pred HHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCC--------ccHHHhHHHHHHHHcCCCCCccCCCChhhhhh
Confidence 3466777777765321 112235777777876 568888889999988833 344444444
Q ss_pred cccc--CCcccccCCHHHHHHH
Q 048152 79 SVHV--DCTQSVCWTDEDNNLL 98 (104)
Q Consensus 79 ~~~~--erkkg~pWTeeEhrlF 98 (104)
+++. .+.|=+|.|++.-..+
T Consensus 109 SSGTT~g~~K~IP~t~e~l~~~ 130 (612)
T PLN02620 109 SSGTSGGERKLMPTIEEELGRR 130 (612)
T ss_pred cCCCCCCceeeeecCHHHHHHH
Confidence 4443 4688999999986553
No 88
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.23 E-value=39 Score=31.66 Aligned_cols=59 Identities=24% Similarity=0.346 Sum_probs=38.8
Q ss_pred CCchHHHHHHHcCCCCCHHHHHHHHHHHHH-----------------hhhhhcCCCCCCcc------ccCCCccccCCcc
Q 048152 30 DPHRWEVVAAMVGGTKSAEDVQKHYVILLE-----------------DLQFIESGKLDHKL------AEFQPSVHVDCTQ 86 (104)
Q Consensus 30 ~pdRWekIA~~vpg~KS~~eV~~ryk~L~~-----------------dV~~IEsG~v~~~~------~~~~~~~~~erkk 86 (104)
.--..-++-..|.- +|++.|.+||-.|++ +|...|+|.+|-.+ |+.+.. .-+|.-
T Consensus 70 GL~QYk~~~Qqvnv-~SlE~VvrhflklAe~kte~Aq~qad~l~~ve~vdDLe~~~tPEslllSvVsGe~sqd-R~DR~l 147 (988)
T KOG2072|consen 70 GLFQYKNLCQQVNV-KSLENVVRHFLKLAEEKTEAAQEQADELQKVEEVDDLEAGVTPESLLLSVVSGEDSQD-RSDREL 147 (988)
T ss_pred HHHHHHHHHHHhch-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCChHHHHHHHhccccccc-ccchHH
Confidence 34456788888987 999999999998844 44555777776321 222222 245555
Q ss_pred cccC
Q 048152 87 SVCW 90 (104)
Q Consensus 87 g~pW 90 (104)
-+||
T Consensus 148 ltPW 151 (988)
T KOG2072|consen 148 LTPW 151 (988)
T ss_pred HHHH
Confidence 6777
No 89
>PF10124 Mu-like_gpT: Mu-like prophage major head subunit gpT; InterPro: IPR018774 This entry represents a conserved domain found in various caudoviral prophage proteins, including the bacteriophage Mu major head subunit GpT and related prophage.
Probab=28.88 E-value=18 Score=29.51 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHH
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDV 50 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV 50 (104)
.+.|.++|...+. .|.+||..||. -|..+-
T Consensus 9 ~~~F~~~l~~a~~----~~~~iA~~VpS-tt~~n~ 38 (291)
T PF10124_consen 9 KTAFQKGLEAAPP----QWNKIATEVPS-TTASNT 38 (291)
T ss_pred HHHHHHHHhhCCC----hhheEEEEccC-CCCccc
Confidence 4678888887653 69999999997 776643
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=28.40 E-value=82 Score=18.07 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~ 59 (104)
.+.|+.+|..+|. .++-|-..+.+.-..+..++-...|+.+++
T Consensus 17 ~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 17 IAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888888875 666666666554443557777777777653
No 91
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=28.29 E-value=56 Score=17.97 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHH
Q 048152 15 ENKLFELALAVVDEQDPHRWEVVAA 39 (104)
Q Consensus 15 E~k~fE~ALa~~p~~~pdRWekIA~ 39 (104)
=.+.|+++|+.+|. .++-|...|.
T Consensus 20 A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 20 AERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 35789999999884 5666766553
No 92
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=28.15 E-value=99 Score=20.97 Aligned_cols=29 Identities=38% Similarity=0.696 Sum_probs=23.9
Q ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 33 RWekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
.|+.-|. +-| ||.++..+.|-.||+.++.
T Consensus 55 K~eAW~~-LKG-ksqedA~qeYialVeeLka 83 (87)
T COG4281 55 KYEAWAG-LKG-KSQEDARQEYIALVEELKA 83 (87)
T ss_pred hHHHHhh-ccC-ccHHHHHHHHHHHHHHHHh
Confidence 5676665 447 9999999999999998874
No 93
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=28.00 E-value=62 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=20.7
Q ss_pred chHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 32 HRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 32 dRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
+||..|+.... ....+++..++.++..
T Consensus 16 eRw~~i~~~~k--~~i~~l~~~~~~~~~~ 42 (95)
T PF15508_consen 16 ERWVQIAKDYK--DEIRELIEVLKDLLQS 42 (95)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 79999999984 5566777777777655
No 94
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=27.32 E-value=2.2e+02 Score=24.59 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCC------------CchHHHHHHHcC----CCCCHHHHHHHHHHHHHh
Q 048152 8 FCGWSWEENKLFELALAVVDEQD------------PHRWEVVAAMVG----GTKSAEDVQKHYVILLED 60 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~------------pdRWekIA~~vp----g~KS~~eV~~ryk~L~~d 60 (104)
-..||.+=...|-.||+.||+.. =.|=|-||..+- -.||..+|-.|-+-|..-
T Consensus 76 egvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarr 144 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 144 (455)
T ss_pred ccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 34699999999999999998631 258899998873 236688999888877543
No 95
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=27.22 E-value=81 Score=21.51 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=26.2
Q ss_pred HHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCC
Q 048152 22 ALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDH 71 (104)
Q Consensus 22 ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~ 71 (104)
.+..||.+. ---++.|..+ | ||...|+. .|++|..|.
T Consensus 4 ~~~~~p~d~-v~~~~FA~~I-G-Kt~sAVr~----------Mi~~gKLP~ 40 (87)
T PF10743_consen 4 QVSEYPSDA-VTYEKFAEYI-G-KTPSAVRK----------MIKAGKLPV 40 (87)
T ss_pred hHHhhhccc-cCHHHHHHHH-C-CCHHHHHH----------HHHcCCCCe
Confidence 345565432 2248999999 5 99999875 478898873
No 96
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=27.22 E-value=1.3e+02 Score=25.69 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC----------CCchHHHHHHHcC----CCCCHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQ----------DPHRWEVVAAMVG----GTKSAEDVQKHYVIL 57 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~----------~pdRWekIA~~vp----g~KS~~eV~~ryk~L 57 (104)
....|+.+=..+|..||+.||+. ...|=+-||..|- -.||..+|-.|.+-|
T Consensus 48 ~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 48 GEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 34579999999999999999874 2346677777663 236788999999988
No 97
>PF07030 DUF1320: Protein of unknown function (DUF1320); InterPro: IPR009752 This entry is represented by the Bacteriophage Mu, Gp36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.70 E-value=90 Score=21.69 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCccc
Q 048152 47 AEDVQKHYVILLEDLQFIESGKLDHKLA 74 (104)
Q Consensus 47 ~~eV~~ryk~L~~dV~~IEsG~v~~~~~ 74 (104)
.+.++++|+.-+.-++.|-+|.+.+..+
T Consensus 84 ~e~~~~rY~~A~~~L~~ia~G~~~L~~~ 111 (130)
T PF07030_consen 84 TEPVRERYKDAIKWLEDIAKGKISLGLP 111 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence 7899999999999999999999987764
No 98
>PF15583 Imm41: Immunity protein 41
Probab=26.66 E-value=89 Score=23.49 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 11 WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
=|.||..++-+||+.|-.+..+ -.++..+|. -+..++-.-.+.|
T Consensus 111 at~EE~~~~~~aL~dF~~~p~~--YdL~Em~de-edi~Emae~~e~l 154 (158)
T PF15583_consen 111 ATSEENTAINKALKDFARNPLE--YDLSEMCDE-EDIYEMAEICEEL 154 (158)
T ss_pred cCHHHHHHHHHHHHHHHhCHHh--hhHHHhCCH-HHHHHHHHHHHHH
Confidence 4889999999999999764433 456777775 3444444444433
No 99
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=26.51 E-value=2.2e+02 Score=19.70 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHhhc
Q 048152 10 GWSWEENKLFELALAVV 26 (104)
Q Consensus 10 ~WT~eE~k~fE~ALa~~ 26 (104)
.||.-+-+.|-.-|+.+
T Consensus 14 ~WS~~QRe~Fl~~Lv~k 30 (98)
T PF14969_consen 14 EWSELQREDFLQDLVEK 30 (98)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 58999999998888765
No 100
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=26.12 E-value=78 Score=21.42 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q 048152 17 KLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69 (104)
Q Consensus 17 k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v 69 (104)
..|+.+++.|-.+.|. ...+ ....+|..-|..+-.+|..||+..-
T Consensus 20 ~~~~~gf~~yl~~~~~------~~y~--~~~~~iT~~f~~~S~ei~~ie~~L~ 64 (97)
T PF14966_consen 20 NRFEEGFKKYLRSGPE------EAYR--QLCHEITQEFSAISKEILAIEAELR 64 (97)
T ss_pred HHHHHHHHHHHhcCCh------HHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999877766 2332 4566788999999999999998754
No 101
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=25.55 E-value=1.4e+02 Score=16.87 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 12 SWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 12 T~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
+..|..++..-. | ..-.+..||..+ | -|..-|.++....+.-++
T Consensus 6 ~~~er~vi~~~y--~---~~~t~~eIa~~l-g-~s~~~V~~~~~~al~kLR 49 (50)
T PF04545_consen 6 PPREREVIRLRY--F---EGLTLEEIAERL-G-ISRSTVRRILKRALKKLR 49 (50)
T ss_dssp -HHHHHHHHHHH--T---ST-SHHHHHHHH-T-SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh--c---CCCCHHHHHHHH-C-CcHHHHHHHHHHHHHHhc
Confidence 445566655444 2 223489999999 5 999999999887766554
No 102
>TIGR02293 TAS_TIGR02293 putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module.
Probab=25.53 E-value=1e+02 Score=21.59 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCC-CCchH-HHHHHHcCCCCCHHHHHH---HHHHHHHhhhhhcCCCC
Q 048152 17 KLFELALAVVDEQ-DPHRW-EVVAAMVGGTKSAEDVQK---HYVILLEDLQFIESGKL 69 (104)
Q Consensus 17 k~fE~ALa~~p~~-~pdRW-ekIA~~vpg~KS~~eV~~---ryk~L~~dV~~IEsG~v 69 (104)
+++..|...|+.. ...+| .+-...++| +++-|+.. -.....+-+.+||.|-+
T Consensus 76 ri~~~a~~vfg~~~~a~~WL~~Pn~~lgg-~~Pldll~t~~G~~~V~~~L~rie~G~~ 132 (133)
T TIGR02293 76 RVWKAAVDVFGGDAEARQWLFRPVPGLGN-RRPIDLLLTEAGAEIVEDLLGRLEYGVY 132 (133)
T ss_pred HHHHHHHHHHCCHHHHHHHHhCcHHhhCC-CCHHHHHcCHHHHHHHHHHHHHHHcCCC
Confidence 4566666777543 24578 555667988 99999872 34444555688898854
No 103
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=25.44 E-value=68 Score=19.06 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 048152 45 KSAEDVQKHYVILLEDLQFIESGKLDHK 72 (104)
Q Consensus 45 KS~~eV~~ryk~L~~dV~~IEsG~v~~~ 72 (104)
.|..++-.+...=..-|.+||+|+.+.|
T Consensus 15 ls~~~lA~~~g~s~s~v~~iE~G~~~~p 42 (64)
T PF13560_consen 15 LSQAQLADRLGVSQSTVSRIERGRRPRP 42 (64)
T ss_dssp S-HHHHHHHHTS-HHHHHHHHTTSSSS-
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCCCC
Confidence 6777777777777778999999988533
No 104
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=25.22 E-value=1.2e+02 Score=19.69 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 13 WEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
.-++++|+-.=.......---=+.|++.+ | -+..+|+.....|+++
T Consensus 47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l-~-~~~~~v~~al~~L~~e 92 (102)
T PF08784_consen 47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQL-G-MSENEVRKALDFLSNE 92 (102)
T ss_dssp HHHHHHHHHHHC----TTTEEHHHHHHHS-T-S-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHh-C-cCHHHHHHHHHHHHhC
Confidence 44555554333312222223458899999 7 9999999999998653
No 105
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=24.27 E-value=76 Score=15.50 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=9.2
Q ss_pred HHHHHHHHhhcCC
Q 048152 16 NKLFELALAVVDE 28 (104)
Q Consensus 16 ~k~fE~ALa~~p~ 28 (104)
.+.|+..+..||.
T Consensus 20 ~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 20 IEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCcC
Confidence 4567777777774
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.71 E-value=1.8e+02 Score=22.76 Aligned_cols=43 Identities=7% Similarity=0.116 Sum_probs=17.8
Q ss_pred HHHHHHhhcCCC--CCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 18 LFELALAVVDEQ--DPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 18 ~fE~ALa~~p~~--~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
.|++++..||.+ .++-|-+++...-.-+..++.+..|+.++.+
T Consensus 202 ~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 202 YFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444432 2344444433331113344445555544443
No 107
>PLN03162 golden-2 like transcription factor; Provisional
Probab=23.62 E-value=67 Score=27.79 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.0
Q ss_pred CCcccccCCHHHHHHHhhhc
Q 048152 83 DCTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 83 erkkg~pWTeeEhrlFL~~~ 102 (104)
.+|.-+-||.|=|+.|+.++
T Consensus 233 ~KKpRLrWTpELH~rFVeAV 252 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAV 252 (526)
T ss_pred CCCCcccCCHHHHHHHHHHH
Confidence 45557899999999999986
No 108
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=23.02 E-value=3.4e+02 Score=24.04 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCC---------CCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCC-----CCccccCCC
Q 048152 13 WEENKLFELALAVVDE---------QDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL-----DHKLAEFQP 78 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~---------~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v-----~~~~~~~~~ 78 (104)
.-|++.|...|...-. ..-..++..++.||= .-|+.|...|.+|-.|.- +.|+.....
T Consensus 36 ~~Q~~vL~~iL~~n~~Teyg~~~gf~~i~~~~~F~~~VPv--------~~Yedl~pyIeRi~~Ge~~~vL~~~pi~~f~~ 107 (597)
T PLN02249 36 SVQEKVLGEILSRNSNTEYLKRFDLNGAVDRKTFKSKVPV--------VTYEDLKTEIQRISNGDRSPILSSHPITEFLT 107 (597)
T ss_pred HHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCC--------ccHHHhHHHHHHHHcCCCCceeCCCchhhhcc
Confidence 3466777777765321 112246777788886 568888888888877722 333333344
Q ss_pred ccc--cCCcccccCCHHHHH
Q 048152 79 SVH--VDCTQSVCWTDEDNN 96 (104)
Q Consensus 79 ~~~--~erkkg~pWTeeEhr 96 (104)
+++ ..+.|=+|.|.+--+
T Consensus 108 SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 108 SSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred cCCCCCCceeEEeccHHHHH
Confidence 443 357889999998765
No 109
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=22.88 E-value=1e+02 Score=17.23 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 048152 45 KSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 45 KS~~eV~~ryk~L~~dV~ 62 (104)
-|.++|+++|..|+.-..
T Consensus 12 ~~~~~ik~~y~~l~~~~H 29 (55)
T cd06257 12 ASDEEIKKAYRKLALKYH 29 (55)
T ss_pred CCHHHHHHHHHHHHHHHC
Confidence 789999999999976543
No 110
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=22.51 E-value=3.6e+02 Score=24.13 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCCC--------CCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCC-----CccccCCCc
Q 048152 13 WEENKLFELALAVVDEQ--------DPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLD-----HKLAEFQPS 79 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~~--------~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~-----~~~~~~~~~ 79 (104)
.-|++.|...|.+.-.. .--.++...+.||= .-|+.|..+|.+|-.|.-. .|+.....+
T Consensus 26 ~~Q~~vL~~iL~~n~~Teyg~~~~~~i~~~e~Fk~~VPv--------~~Yedl~pyI~Ri~~Ge~~~llt~~pi~~F~~S 97 (606)
T PLN02247 26 QIQQQVLEEILTQNAGTEYLRSFLDGESDKQSFKNKVPV--------VNYEDIKPCIERIANGESSSIISAQPITELLTS 97 (606)
T ss_pred HHHHHHHHHHHHhcccChhhhhcCccCCCHHHHHHhCCC--------ccHHHhHHHHHHHHcCCCCceeCCCCcceeecc
Confidence 45778888888764311 11124666666775 5688888999999888543 333344444
Q ss_pred ccc--CCcccccCCHHH
Q 048152 80 VHV--DCTQSVCWTDED 94 (104)
Q Consensus 80 ~~~--erkkg~pWTeeE 94 (104)
++. .+.|=+|-|.+.
T Consensus 98 SGTT~g~~K~IP~t~e~ 114 (606)
T PLN02247 98 SGTSGGQPKLMPSTAEE 114 (606)
T ss_pred CCCCCCceeEeeccHHH
Confidence 443 478899999987
No 111
>KOG3331 consensus Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation, ribosomal structure and biogenesis]
Probab=22.45 E-value=85 Score=24.59 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHhhhhhcCCCCCCccc-cCC------------------C--ccccCCcccccCCHHHHHH
Q 048152 57 LLEDLQFIESGKLDHKLA-EFQ------------------P--SVHVDCTQSVCWTDEDNNL 97 (104)
Q Consensus 57 L~~dV~~IEsG~v~~~~~-~~~------------------~--~~~~erkkg~pWTeeEhrl 97 (104)
|..+--++..+.||.|.. .+. + .....-+.|.+|+.||-|+
T Consensus 12 ~~ka~~Rs~~~lvp~p~~~sa~~~~dt~pL~qFFddk~~~~~~~~~p~~k~GR~W~aeELR~ 73 (213)
T KOG3331|consen 12 LPKAKIRSPTQLVPIPPTTSALRVPDTHPLWQFFDDKKFDRSADEEPPVKHGRAWSAEELRL 73 (213)
T ss_pred hhHhhccCCccccCCccccccCCCCCCCcHHHHhhhhhccCChhhcCCcccCCccchHHHhc
Confidence 445566788888876632 111 1 1122356699999999664
No 112
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=21.31 E-value=2.4e+02 Score=18.10 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
|+.+-.+|...+. -.+..||..+ | -|...|.++.+.|.++
T Consensus 5 D~~il~~L~~~~~---~~~~~la~~l-~-~s~~tv~~~l~~L~~~ 44 (108)
T smart00344 5 DRKILEELQKDAR---ISLAELAKKV-G-LSPSTVHNRVKRLEEE 44 (108)
T ss_pred HHHHHHHHHHhCC---CCHHHHHHHH-C-cCHHHHHHHHHHHHHC
Confidence 4444466666543 3489999999 5 9999999999999774
No 113
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=21.27 E-value=1.1e+02 Score=20.51 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 048152 45 KSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 45 KS~~eV~~ryk~L~~dV~ 62 (104)
-|+.++.++|..|..|-.
T Consensus 33 GnA~ql~EKY~~LArDA~ 50 (80)
T PF13763_consen 33 GNAQQLIEKYNQLARDAQ 50 (80)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 489999999999999875
No 114
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=21.19 E-value=45 Score=24.88 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCC--CCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQ--DPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~--~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
..|+.++ .|.-|||.|..| .-++|..|-..=.+..=+.+|+.||+.+.
T Consensus 115 ~~w~~~~--~l~~aLAAYNAG~g~V~~y~gipp~~et~~Yv~~Vlar~~~~~ 164 (166)
T cd01021 115 PTWTKEQ--QLKGGISAYNAGAGNVRSYEGMDIGTTGNDYSNDVVARAQYYK 164 (166)
T ss_pred CCCchhh--hhhhHHHHhccCHHHHhhcCCCCCCcchHHHHHHHHHHHHHHh
Confidence 3466653 344588888765 45677654322222111668888887764
No 115
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=20.90 E-value=1.4e+02 Score=25.65 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcC
Q 048152 13 WEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIES 66 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEs 66 (104)
.|-.++++..|-++.. | +++++++++|+++..-|.-||.
T Consensus 3 ~Ek~e~lkell~~lhe--------------G-~d~~~lkk~f~e~~~~is~~EI 41 (409)
T COG2461 3 EEKKKLLKELLLKLHE--------------G-KDVEEVKKQFKELLKGISPLEI 41 (409)
T ss_pred HHHHHHHHHHHHHHhc--------------C-CCHHHHHHHHHHHhccCCceee
Confidence 3455666666666654 6 8899999999999888776643
No 116
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=20.50 E-value=1.2e+02 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.3
Q ss_pred HHHHHcC--CCCCHHHHHHHHHHHHHhhh
Q 048152 36 VVAAMVG--GTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 36 kIA~~vp--g~KS~~eV~~ryk~L~~dV~ 62 (104)
-||..+. | .|++||...|..+..+|.
T Consensus 54 iiA~~l~~~~-~t~~e~~~~y~~~~~~iF 81 (309)
T cd07216 54 LIAIMLGRLR-MTVDECIDAYTRLAKKIF 81 (309)
T ss_pred HHHHHhcccC-CCHHHHHHHHHHHhHHhC
Confidence 4666663 5 899999999999988886
No 117
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=20.38 E-value=1.7e+02 Score=16.10 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 34 WEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 34 WekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
.+.||..+ | -|.+-|-+-.+.|.++
T Consensus 5 r~diA~~l-G-~t~ETVSR~l~~l~~~ 29 (32)
T PF00325_consen 5 RQDIADYL-G-LTRETVSRILKKLERQ 29 (32)
T ss_dssp HHHHHHHH-T-S-HHHHHHHHHHHHHT
T ss_pred HHHHHHHh-C-CcHHHHHHHHHHHHHc
Confidence 57899999 4 8999999988888653
Done!