Query 048152
Match_columns 104
No_of_seqs 110 out of 429
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqq_A RSGI RUH-037, DNAJ homo 99.9 9.2E-26 3.1E-30 146.5 8.4 66 5-73 5-70 (72)
2 2cjj_A Radialis; plant develop 99.9 3.5E-25 1.2E-29 150.0 7.9 72 1-73 1-72 (93)
3 4eef_G F-HB80.4, designed hema 99.9 5.2E-24 1.8E-28 139.6 -0.0 54 2-56 14-67 (74)
4 1wgx_A KIAA1903 protein; MYB D 99.9 1.5E-22 5.1E-27 132.3 5.5 56 6-62 6-61 (73)
5 2cqr_A RSGI RUH-043, DNAJ homo 99.8 8.2E-20 2.8E-24 118.7 6.2 56 6-62 16-71 (73)
6 2yus_A SWI/SNF-related matrix- 99.5 2.3E-14 7.9E-19 93.9 4.3 59 7-70 17-76 (79)
7 2yum_A ZZZ3 protein, zinc fing 99.4 2.5E-13 8.6E-18 86.7 6.2 50 8-58 8-59 (75)
8 2k9n_A MYB24; R2R3 domain, DNA 99.3 6.5E-12 2.2E-16 84.8 6.6 67 9-102 2-68 (107)
9 1gv2_A C-MYB, MYB proto-oncoge 99.3 4.8E-12 1.6E-16 84.6 5.8 68 8-102 4-71 (105)
10 2eqr_A N-COR1, N-COR, nuclear 99.2 2E-11 6.8E-16 75.8 6.9 46 6-56 10-55 (61)
11 2din_A Cell division cycle 5-l 99.2 2.5E-11 8.6E-16 75.8 7.0 55 8-68 9-63 (66)
12 1h8a_C AMV V-MYB, MYB transfor 99.2 2.6E-11 8.7E-16 83.9 7.3 69 7-102 26-94 (128)
13 3osg_A MYB21; transcription-DN 99.2 3.6E-11 1.2E-15 83.3 6.9 67 8-102 11-77 (126)
14 1x41_A Transcriptional adaptor 99.2 5E-11 1.7E-15 73.5 6.5 50 5-58 5-54 (60)
15 2elk_A SPCC24B10.08C protein; 99.2 6.8E-11 2.3E-15 72.6 7.0 51 3-57 4-55 (58)
16 2cu7_A KIAA1915 protein; nucle 99.1 2.4E-10 8.1E-15 72.6 7.3 50 7-61 8-57 (72)
17 2dim_A Cell division cycle 5-l 99.1 1.2E-10 4.3E-15 73.3 5.1 46 8-57 9-54 (70)
18 3zqc_A MYB3; transcription-DNA 99.1 6E-11 2E-15 82.5 3.8 67 9-102 3-69 (131)
19 1guu_A C-MYB, MYB proto-oncoge 99.1 2.9E-10 1E-14 67.7 6.0 47 8-58 3-49 (52)
20 1ofc_X ISWI protein; nuclear p 99.1 8.9E-11 3E-15 93.3 4.8 91 7-101 109-226 (304)
21 1h89_C C-MYB, MYB proto-oncoge 99.0 4.7E-10 1.6E-14 79.8 7.0 69 7-102 57-125 (159)
22 2crg_A Metastasis associated p 99.0 1E-09 3.4E-14 70.1 6.6 45 6-55 6-51 (70)
23 2yqk_A Arginine-glutamic acid 99.0 9.1E-10 3.1E-14 68.9 6.2 43 8-55 9-52 (63)
24 2d9a_A B-MYB, MYB-related prot 99.0 1.1E-09 3.8E-14 67.0 6.0 48 7-58 7-54 (60)
25 1gvd_A MYB proto-oncogene prot 99.0 6.5E-10 2.2E-14 66.3 4.8 46 8-57 3-48 (52)
26 1h89_C C-MYB, MYB proto-oncoge 98.9 1.6E-10 5.5E-15 82.3 0.6 68 8-102 6-73 (159)
27 1w0t_A Telomeric repeat bindin 98.9 6.1E-09 2.1E-13 62.4 6.2 46 9-58 3-50 (53)
28 2k9n_A MYB24; R2R3 domain, DNA 98.9 5.2E-09 1.8E-13 70.4 6.6 50 8-62 53-102 (107)
29 2iw5_B Protein corest, REST co 98.9 4.4E-09 1.5E-13 81.1 6.8 50 2-56 127-176 (235)
30 3sjm_A Telomeric repeat-bindin 98.9 9.8E-09 3.4E-13 64.4 7.1 52 3-58 6-59 (64)
31 1gv2_A C-MYB, MYB proto-oncoge 98.8 3.5E-09 1.2E-13 70.5 5.3 47 7-58 55-101 (105)
32 3osg_A MYB21; transcription-DN 98.8 1.9E-08 6.6E-13 69.4 6.8 50 8-62 62-111 (126)
33 1ity_A TRF1; helix-turn-helix, 98.7 3.9E-08 1.3E-12 61.7 6.4 48 8-59 10-59 (69)
34 1h8a_C AMV V-MYB, MYB transfor 98.7 1E-08 3.5E-13 70.7 4.1 47 7-58 78-124 (128)
35 2ltp_A Nuclear receptor corepr 98.1 1.9E-09 6.6E-14 71.3 0.0 50 6-60 14-63 (89)
36 2llk_A Cyclin-D-binding MYB-li 98.7 2.2E-08 7.5E-13 64.7 4.5 49 8-62 23-71 (73)
37 4a69_C Nuclear receptor corepr 98.7 3.8E-08 1.3E-12 66.0 5.6 44 8-56 43-86 (94)
38 3zqc_A MYB3; transcription-DNA 98.5 1.7E-07 5.9E-12 64.9 5.4 50 8-62 54-103 (131)
39 2xag_B REST corepressor 1; ami 98.3 1.2E-06 4E-11 73.3 6.8 49 3-56 375-423 (482)
40 2ckx_A NGTRF1, telomere bindin 98.3 2.4E-06 8.2E-11 56.2 6.4 46 10-59 2-51 (83)
41 2juh_A Telomere binding protei 98.2 4.7E-06 1.6E-10 58.5 7.6 72 8-100 17-92 (121)
42 1ug2_A 2610100B20RIK gene prod 98.0 2.2E-05 7.5E-10 53.2 6.7 52 9-62 34-85 (95)
43 1x58_A Hypothetical protein 49 97.9 2.8E-05 9.7E-10 49.0 6.2 51 3-58 3-56 (62)
44 2aje_A Telomere repeat-binding 97.9 1.8E-05 6.2E-10 54.2 5.6 49 7-59 12-64 (105)
45 2roh_A RTBP1, telomere binding 97.8 3.8E-05 1.3E-09 53.8 6.2 48 8-59 31-82 (122)
46 3hm5_A DNA methyltransferase 1 97.7 8.7E-05 3E-09 49.9 6.6 51 9-64 31-86 (93)
47 2lr8_A CAsp8-associated protei 96.9 4.3E-06 1.5E-10 53.9 0.0 51 9-62 15-65 (70)
48 1ign_A Protein (RAP1); RAP1,ye 97.6 5.9E-05 2E-09 58.5 4.2 52 8-60 8-61 (246)
49 2xag_B REST corepressor 1; ami 97.5 1.5E-05 5.1E-10 66.7 0.0 43 7-54 188-230 (482)
50 4b4c_A Chromodomain-helicase-D 97.4 0.00039 1.3E-08 50.6 6.7 52 8-61 7-60 (211)
51 2eqr_A N-COR1, N-COR, nuclear 97.2 0.00023 8E-09 43.5 2.9 25 78-102 3-27 (61)
52 2y9y_A Imitation switch protei 96.8 0.0049 1.7E-07 50.1 8.0 53 8-64 123-176 (374)
53 4iej_A DNA methyltransferase 1 96.7 0.0059 2E-07 41.0 6.8 53 8-64 30-86 (93)
54 1fex_A TRF2-interacting telome 96.3 0.011 3.8E-07 36.1 5.5 47 9-56 3-55 (59)
55 2ebi_A DNA binding protein GT- 96.3 0.016 5.3E-07 37.0 6.4 62 6-67 2-72 (86)
56 1ofc_X ISWI protein; nuclear p 95.7 0.025 8.6E-07 44.7 6.5 54 7-61 211-276 (304)
57 2yqk_A Arginine-glutamic acid 95.0 0.014 4.9E-07 35.7 2.6 18 84-101 6-23 (63)
58 1ign_A Protein (RAP1); RAP1,ye 94.6 0.12 4.1E-06 40.0 7.3 40 33-73 173-222 (246)
59 2xb0_X Chromo domain-containin 94.6 0.099 3.4E-06 40.6 6.8 52 9-62 4-57 (270)
60 1irz_A ARR10-B; helix-turn-hel 94.5 0.27 9.2E-06 30.7 7.5 56 5-62 4-61 (64)
61 2yus_A SWI/SNF-related matrix- 93.5 0.047 1.6E-06 34.9 2.7 20 83-102 14-33 (79)
62 1irz_A ARR10-B; helix-turn-hel 93.5 0.04 1.4E-06 34.5 2.2 20 83-102 3-22 (64)
63 2crg_A Metastasis associated p 93.3 0.045 1.5E-06 34.2 2.2 18 84-101 5-22 (70)
64 2yum_A ZZZ3 protein, zinc fing 92.0 0.061 2.1E-06 33.3 1.6 14 89-102 10-23 (75)
65 2cu7_A KIAA1915 protein; nucle 91.8 0.075 2.6E-06 32.9 1.8 16 87-102 9-24 (72)
66 2y9y_A Imitation switch protei 90.9 0.6 2E-05 37.9 6.7 54 7-61 227-292 (374)
67 4a69_C Nuclear receptor corepr 89.3 0.15 5.2E-06 33.5 1.7 17 85-101 41-57 (94)
68 2cqr_A RSGI RUH-043, DNAJ homo 89.3 0.26 9.1E-06 31.1 2.7 19 84-102 15-33 (73)
69 4eef_G F-HB80.4, designed hema 88.6 0.15 5.2E-06 32.9 1.2 18 84-101 17-34 (74)
70 2elk_A SPCC24B10.08C protein; 88.3 0.2 6.9E-06 29.8 1.6 14 89-102 11-24 (58)
71 1x41_A Transcriptional adaptor 88.0 0.22 7.5E-06 29.7 1.6 15 88-102 9-23 (60)
72 2cqq_A RSGI RUH-037, DNAJ homo 87.9 0.28 9.5E-06 30.9 2.1 16 87-102 8-23 (72)
73 2iw5_B Protein corest, REST co 87.0 1.2 4E-05 34.2 5.5 19 83-101 129-147 (235)
74 1gvd_A MYB proto-oncogene prot 86.2 0.32 1.1E-05 27.9 1.6 15 88-102 4-18 (52)
75 1guu_A C-MYB, MYB proto-oncoge 86.1 0.32 1.1E-05 27.8 1.6 15 88-102 4-18 (52)
76 1wgx_A KIAA1903 protein; MYB D 85.4 0.36 1.2E-05 30.7 1.7 14 88-101 9-22 (73)
77 4b4c_A Chromodomain-helicase-D 84.4 5.6 0.00019 28.3 7.8 50 8-61 134-197 (211)
78 2d9a_A B-MYB, MYB-related prot 83.5 0.49 1.7E-05 27.9 1.6 15 88-102 9-23 (60)
79 1w0t_A Telomeric repeat bindin 83.3 0.59 2E-05 27.0 1.8 15 88-102 3-17 (53)
80 1ity_A TRF1; helix-turn-helix, 82.7 0.83 2.8E-05 27.7 2.4 20 83-102 6-25 (69)
81 2din_A Cell division cycle 5-l 81.4 0.66 2.2E-05 27.9 1.6 15 88-102 10-24 (66)
82 2ltp_A Nuclear receptor corepr 80.9 0.36 1.2E-05 31.1 0.0 16 87-102 16-31 (89)
83 1x58_A Hypothetical protein 49 77.9 1.5 5.3E-05 27.1 2.5 15 88-102 9-23 (62)
84 3sjm_A Telomeric repeat-bindin 77.6 1.2 3.9E-05 27.1 1.8 15 88-102 12-26 (64)
85 2dim_A Cell division cycle 5-l 72.5 1.8 6.3E-05 26.1 1.8 15 88-102 10-24 (70)
86 2llk_A Cyclin-D-binding MYB-li 72.0 1.7 5.8E-05 27.3 1.6 15 88-102 24-38 (73)
87 2hzd_A Transcriptional enhance 54.8 38 0.0013 21.8 5.7 23 7-29 5-27 (82)
88 2roh_A RTBP1, telomere binding 54.4 12 0.0004 25.7 3.3 21 82-102 26-46 (122)
89 2xb0_X Chromo domain-containin 52.4 20 0.00067 27.6 4.7 32 5-39 165-196 (270)
90 2jxj_A Histone demethylase jar 44.3 13 0.00046 23.4 2.2 35 32-66 58-95 (96)
91 2ys8_A RAB-related GTP-binding 44.3 55 0.0019 20.2 6.5 48 8-62 9-56 (90)
92 2l5g_A GPS2 protein, G protein 43.8 8.8 0.0003 21.6 1.1 10 92-101 29-38 (38)
93 2da7_A Zinc finger homeobox pr 42.7 56 0.0019 20.5 4.9 44 13-58 14-57 (71)
94 2lm1_A Lysine-specific demethy 42.1 43 0.0015 21.4 4.5 36 32-67 66-104 (107)
95 2da6_A Hepatocyte nuclear fact 40.1 77 0.0026 20.9 5.5 33 9-41 11-43 (102)
96 1fs1_B SKP1, cyclin A/CDK2-ass 40.1 16 0.00054 24.7 2.2 41 14-55 90-134 (141)
97 1hbk_A ACBP, acyl-COA binding 40.0 27 0.00094 22.1 3.2 27 34-62 58-84 (89)
98 2irf_G IRF-2, interferon regul 38.9 3.6 0.00012 28.0 -1.3 12 61-72 13-24 (113)
99 2dk8_A DNA-directed RNA polyme 38.5 71 0.0024 20.3 5.0 41 15-59 16-56 (81)
100 3qu6_A IRF3 protein; helix-tur 38.1 3.5 0.00012 28.3 -1.5 12 61-72 16-27 (116)
101 3kw6_A 26S protease regulatory 37.8 52 0.0018 19.4 4.1 41 16-57 9-49 (78)
102 1hx1_B BAG-1, BAG-family molec 36.8 16 0.00056 25.0 1.8 28 45-72 18-45 (114)
103 1kkx_A Transcription regulator 36.1 45 0.0015 22.4 4.0 32 31-63 69-100 (123)
104 1i6z_A BAG-family molecular ch 34.3 23 0.00078 24.9 2.3 28 45-72 28-55 (135)
105 3v7d_A Suppressor of kinetocho 33.8 28 0.00096 24.3 2.7 43 12-55 100-146 (169)
106 2cb8_A Acyl-COA-binding protei 33.4 36 0.0012 21.5 3.0 21 41-62 62-82 (87)
107 2lbb_A Acyl COA binding protei 33.0 40 0.0014 22.0 3.2 28 33-62 64-91 (96)
108 3aji_B S6C, proteasome (prosom 32.8 67 0.0023 19.0 4.1 41 16-57 7-47 (83)
109 1st7_A ACBP, acyl-COA-binding 32.6 29 0.00099 21.9 2.4 27 34-62 55-81 (86)
110 3qf7_D MRE11; ABC-ATPase, ATPa 32.2 39 0.0013 19.7 2.7 24 45-68 22-45 (50)
111 2dll_A Interferon regulatory f 31.9 4.4 0.00015 27.8 -1.8 11 61-71 14-24 (121)
112 2kk0_A AT-rich interactive dom 31.9 42 0.0014 23.0 3.3 39 32-70 86-128 (145)
113 3qu3_A IRF-7, interferon regul 31.9 4.9 0.00017 28.3 -1.5 12 61-72 20-31 (137)
114 2p1m_A SKP1-like protein 1A; F 31.7 25 0.00085 24.2 2.1 43 12-55 92-138 (160)
115 3epy_A Acyl-COA-binding domain 31.5 41 0.0014 21.5 3.0 27 34-62 58-84 (89)
116 2li6_A SWI/SNF chromatin-remod 31.3 29 0.001 22.8 2.3 29 32-61 71-99 (116)
117 3i4p_A Transcriptional regulat 31.3 78 0.0027 21.2 4.6 36 20-60 9-44 (162)
118 3fp5_A Acyl-COA binding protei 30.9 43 0.0015 22.2 3.1 26 40-67 67-92 (106)
119 1ig6_A MRF-2, modulator recogn 29.9 17 0.0006 23.5 1.0 39 32-70 55-97 (107)
120 2cop_A Acyl-coenzyme A binding 29.7 41 0.0014 22.3 2.8 29 33-63 61-89 (109)
121 2dmu_A Homeobox protein goosec 28.4 90 0.0031 18.0 5.6 45 9-55 12-56 (70)
122 3ejb_A Acyl carrier protein; p 27.8 18 0.00061 22.7 0.7 38 32-69 5-42 (97)
123 1ig7_A Homeotic protein MSX-1; 27.4 84 0.0029 17.4 5.9 45 9-55 5-49 (58)
124 1c20_A DEAD ringer protein; DN 27.4 77 0.0026 21.0 4.0 37 32-68 74-114 (128)
125 2cxy_A BAF250B subunit, HBAF25 27.1 78 0.0027 20.9 3.9 39 32-70 73-115 (125)
126 2ast_A S-phase kinase-associat 27.0 35 0.0012 23.2 2.2 41 14-55 95-139 (159)
127 1jgg_A Segmentation protein EV 25.3 97 0.0033 17.3 5.7 46 8-55 5-50 (60)
128 2dms_A Homeobox protein OTX2; 25.3 1.1E+02 0.0039 18.1 5.7 47 9-57 12-58 (80)
129 2hdd_A Protein (engrailed home 25.3 98 0.0033 17.4 5.6 45 9-55 8-52 (61)
130 2da3_A Alpha-fetoprotein enhan 25.1 1.1E+02 0.0037 18.0 4.0 44 10-55 23-66 (80)
131 2da1_A Alpha-fetoprotein enhan 24.6 1.1E+02 0.0037 17.6 6.4 45 9-55 12-56 (70)
132 2jrz_A Histone demethylase jar 24.6 43 0.0015 22.1 2.2 35 32-67 62-100 (117)
133 1qbj_A Protein (double-strande 24.4 1.3E+02 0.0044 18.5 5.5 42 15-59 12-53 (81)
134 2dmt_A Homeobox protein BARH-l 24.1 1.2E+02 0.0041 18.0 5.7 45 9-55 22-66 (80)
135 2cra_A Homeobox protein HOX-B1 23.9 1.1E+02 0.0039 17.6 5.8 45 9-55 12-56 (70)
136 2krk_A 26S protease regulatory 23.8 79 0.0027 19.4 3.3 40 16-56 17-56 (86)
137 1qgp_A Protein (double strande 23.6 1.3E+02 0.0043 18.1 5.3 41 16-59 17-57 (77)
138 1bw5_A ISL-1HD, insulin gene e 23.6 1.1E+02 0.0038 17.4 5.7 46 8-55 7-52 (66)
139 2e1o_A Homeobox protein PRH; D 23.3 1.2E+02 0.004 17.6 5.8 45 9-55 12-56 (70)
140 2cqu_A Peroxisomal D3,D2-enoyl 23.1 68 0.0023 21.5 3.0 28 34-63 70-97 (116)
141 2k40_A Homeobox expressed in E 23.0 1.1E+02 0.0039 17.4 5.6 45 9-55 6-50 (67)
142 2wh5_A Acyl-COA-binding domain 22.9 69 0.0024 21.1 3.0 29 33-63 65-93 (106)
143 3flv_A Acyl-COA-binding domain 22.8 75 0.0026 21.5 3.2 22 40-62 87-108 (119)
144 2dmq_A LIM/homeobox protein LH 22.8 1.3E+02 0.0043 17.8 5.8 45 9-55 12-56 (80)
145 2da2_A Alpha-fetoprotein enhan 22.4 1.2E+02 0.0041 17.4 5.8 45 9-55 12-56 (70)
146 2eqy_A RBP2 like, jumonji, at 22.2 89 0.0031 20.6 3.5 36 32-67 64-102 (122)
147 2ecc_A Homeobox and leucine zi 22.2 1.5E+02 0.005 18.3 6.6 48 6-55 5-52 (76)
148 1akh_A Protein (mating-type pr 21.6 1.2E+02 0.004 16.9 5.4 45 9-55 10-54 (61)
149 1zq3_P PRD-4, homeotic bicoid 21.1 1.3E+02 0.0045 17.3 5.6 45 9-55 7-51 (68)
150 2ond_A Cleavage stimulation fa 20.4 90 0.0031 21.9 3.4 45 15-59 83-127 (308)
151 1yz8_P Pituitary homeobox 2; D 20.4 1.3E+02 0.0046 17.2 5.5 46 8-55 7-52 (68)
No 1
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.93 E-value=9.2e-26 Score=146.49 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCcc
Q 048152 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKL 73 (104)
Q Consensus 5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~ 73 (104)
.+....||.+|+++||+||++||.++|+||++||+++ | ||++||++||+.|++|+ .||+|+||+|.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~d~-~~~~G~vp~P~ 70 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKDSV-TCSPGMVSGPS 70 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHHSC-CCCSCCCSCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHHhc-CccCCCCCCCC
Confidence 3446679999999999999999999999999999998 8 99999999999999997 68999999884
No 2
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.92 E-value=3.5e-25 Score=150.00 Aligned_cols=72 Identities=47% Similarity=0.713 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCcc
Q 048152 1 MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKL 73 (104)
Q Consensus 1 ~~~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~ 73 (104)
|-+..+....||.+|+++|++||++|+.++|+||++||++||| ||..||+.||+.|++||..||+|.||+|.
T Consensus 1 ~~~~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~~dv~~iesg~vp~P~ 72 (93)
T 2cjj_A 1 MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKVPFPN 72 (93)
T ss_dssp -------CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHHHHHHHHHHSSCCC--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 4556666778999999999999999999999999999999999 99999999999999999999999999884
No 3
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.87 E-value=5.2e-24 Score=139.60 Aligned_cols=54 Identities=35% Similarity=0.668 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 2 EDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 2 ~~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
-+....+..||.+|+|+||+||++||+++|+||++||++||| ||++||++||+.
T Consensus 14 ~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~~ 67 (74)
T 4eef_G 14 ASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYEL 67 (74)
T ss_dssp --------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC-
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 344555678999999999999999999999999999999999 999999999974
No 4
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.86 E-value=1.5e-22 Score=132.25 Aligned_cols=56 Identities=27% Similarity=0.365 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
+....||.+|+++||+||+.||.++|+||++||++||| ||++||++||+.|..+..
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRGKG 61 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhccc
Confidence 45668999999999999999999999999999999999 999999999999955443
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.80 E-value=8.2e-20 Score=118.74 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.....||.+|+++|+.||++|+.++|+||.+||++||| ||..||+.||+.|++||.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHSSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHHccc
Confidence 34567999999999999999999999999999999999 999999999999999986
No 6
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=93.86 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH-HHhhhhhcCCCCC
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL-LEDLQFIESGKLD 70 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L-~~dV~~IEsG~v~ 70 (104)
....||.+|+++|..|+.+|+ ++|.+||..||| ||..||+.||..| ++|+..+|+|.-|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~-RT~~qcr~r~~~~~i~d~~~~~~~~~p 76 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGS-RTQDECILHFLRLPIEDPYLENSDSGP 76 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSS-CCHHHHHHHHTTSCCCCSSCCCCCCCS
T ss_pred cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCC-CCHHHHHHHHHHhcccccccccCCCCC
Confidence 356799999999999999998 689999999999 9999999999999 9999999998655
No 7
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=86.75 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCC--CchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQD--PHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~--pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
...||.||+++|+.++..|+.++ +.+|.+||+.||| ||..||+.||...+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYF 59 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 45799999999999999999766 4899999999999 99999999994443
No 8
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.28 E-value=6.5e-12 Score=84.78 Aligned_cols=67 Identities=12% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcccc
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSV 88 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg~ 88 (104)
..||.+||.+|..++..|+. .+|..||..||| ||..+|+.||...+. .+ . +.-
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~------p~--------------i---~~~ 54 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMIT-RNPRQCRERWNNYIN------PA--------------L---RTD 54 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTT-SCHHHHHHHHHHHSS------SC--------------C---TTC
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCC-CCHHHHHHHHHHHHc------cc--------------c---ccc
Confidence 46999999999999999974 479999999999 999999999986532 00 0 123
Q ss_pred cCCHHHHHHHhhhc
Q 048152 89 CWTDEDNNLLLQLD 102 (104)
Q Consensus 89 pWTeeEhrlFL~~~ 102 (104)
|||+||..+||.++
T Consensus 55 ~WT~eEd~~L~~~~ 68 (107)
T 2k9n_A 55 PWSPEEDMLLDQKY 68 (107)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 89999999999875
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.28 E-value=4.8e-12 Score=84.62 Aligned_cols=68 Identities=19% Similarity=0.411 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS 87 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg 87 (104)
...||.+|+.+|..++..|+. .+|..||..||| ||..+|+.||...+. | .-+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~----------p-------------~~~~ 56 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKG-RIGKQCRERWHNHLN----------P-------------EVKK 56 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTT-CCHHHHHHHHHHTTC----------C-------------CCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcC-CCHHHHHHHHHhccC----------C-------------cccc
Confidence 457999999999999999974 469999999999 999999999987531 1 0113
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.|||+||..+++.++
T Consensus 57 ~~Wt~eEd~~L~~~~ 71 (105)
T 1gv2_A 57 TSWTEEEDRIIYQAH 71 (105)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 489999999999874
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2e-11 Score=75.82 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
.....||.+|+++|+.+|++|++ +|.+||..||| ||..+|+++|-.
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~-rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLER-KSVPDCVLYYYL 55 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTT-SCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCC-CCHHHHHHHHHH
Confidence 34568999999999999999974 79999999999 999999999954
No 11
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=75.79 Aligned_cols=55 Identities=25% Similarity=0.470 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGK 68 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~ 68 (104)
...||.||+.+|..+...|+. +|.+||. +|| ||..+|+.||..++.....+++|.
T Consensus 9 k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCCCC
Confidence 457999999999999999874 8999999 889 999999999999999999999884
No 12
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.22 E-value=2.6e-11 Score=83.85 Aligned_cols=69 Identities=17% Similarity=0.362 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ 86 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk 86 (104)
....||.|||.+|..++..|+. .+|..||..||| ||..+|+.||...+. | .-+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~----------p-------------~~~ 78 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLKG-RIGKQCRERWHNHLN----------P-------------EVK 78 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSSS-CCHHHHHHHHHHTTC----------S-------------SSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhcC-CcHHHHHHHHHHhcc----------c-------------ccc
Confidence 3467999999999999999974 469999999999 999999999987431 1 011
Q ss_pred cccCCHHHHHHHhhhc
Q 048152 87 SVCWTDEDNNLLLQLD 102 (104)
Q Consensus 87 g~pWTeeEhrlFL~~~ 102 (104)
.-|||+||..++|.++
T Consensus 79 ~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAH 94 (128)
T ss_dssp CSCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 3489999999999874
No 13
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.19 E-value=3.6e-11 Score=83.26 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS 87 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg 87 (104)
...||.|||.+|..++..|+. .|..||..||| ||..+|+.||...+. | . . + .
T Consensus 11 k~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~----------p--~--------~--~-~ 62 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPN-RNARQCRDRWKNYLA----------P--S--------I--S-H 62 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTT-CCHHHHHHHHHHHTS----------T--T--------S--C-C
T ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCC-CCHHHHHHHHhhhcc----------c--c--------c--c-c
Confidence 457999999999999999964 69999999999 999999999997542 0 0 0 1 1
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
-|||+||..++|.++
T Consensus 63 ~~WT~eEd~~L~~~v 77 (126)
T 3osg_A 63 TPWTAEEDALLVQKI 77 (126)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 279999999999874
No 14
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=5e-11 Score=73.47 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=44.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
+.....||.+|+++|..|+..|.. .+|.+||..||| ||..+|+.||...+
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCT-KTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTT-SCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCC-CCHHHHHHHHHHHc
Confidence 344567999999999999999974 479999999999 99999999998764
No 15
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.19 E-value=6.8e-11 Score=72.63 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHH
Q 048152 3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVIL 57 (104)
Q Consensus 3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L 57 (104)
+||.....||.+|+.+|..++.+|.. .+|.+||..|| | ||..+|+.||..+
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~-Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGL---GNWADIADYVGNA-RTKEECRDHYLKT 55 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSS-CCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 57777889999999999999999963 47999999999 7 9999999999864
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.11 E-value=2.4e-10 Score=72.60 Aligned_cols=50 Identities=24% Similarity=0.488 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV 61 (104)
....||.||+.+|..++..|+. +|..||..||| ||..+|+.||..++...
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGS-RTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSS-SCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 3567999999999999999976 89999999999 99999999999886554
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=73.34 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
...||.+|+.+|..++.+|.. .+|..||..||| ||..+|+.||...
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHR-KSAKQCKARWYEW 54 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTT-CCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 457999999999999999963 479999999999 9999999999875
No 18
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.08 E-value=6e-11 Score=82.53 Aligned_cols=67 Identities=12% Similarity=0.304 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcccc
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSV 88 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg~ 88 (104)
..||.|||.+|..++..|+. ..|..||..||| ||..+|+.||...+.- + -+ .-
T Consensus 3 g~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p------~----------------~~-~~ 55 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGP---QNWPRITSFLPN-RSPKQCRERWFNHLDP------A----------------VV-KH 55 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTT-SCHHHHHHHHHHHTST------T----------------CC-CS
T ss_pred CCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCC-CCHHHHHHHHhhccCc------c----------------cc-CC
Confidence 57999999999999999963 369999999999 9999999999765421 0 01 12
Q ss_pred cCCHHHHHHHhhhc
Q 048152 89 CWTDEDNNLLLQLD 102 (104)
Q Consensus 89 pWTeeEhrlFL~~~ 102 (104)
|||+||..++|.++
T Consensus 56 ~Wt~eEd~~L~~~~ 69 (131)
T 3zqc_A 56 AWTPEEDETIFRNY 69 (131)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999875
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.07 E-value=2.9e-10 Score=67.68 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
...||.+|+.+|..++..|+. .+|..||..||| ||..+|+.||..++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPN-RTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCC-CCHHHHHHHHHHHc
Confidence 357999999999999999964 479999999999 99999999998875
No 20
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.07 E-value=8.9e-11 Score=93.25 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh----------hhhcCCCCCCcc---
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL----------QFIESGKLDHKL--- 73 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV----------~~IEsG~v~~~~--- 73 (104)
+-+.||..|...|.+|+++|+. +.|++||+.|+| ||.+||+++|+.+.+.+ ..||.|...+..
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~ 184 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGR---DDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLS 184 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCH---HHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999999999976 359999999999 99999999999999998 667777654331
Q ss_pred ---------c-cCCC----ccccCCcccccCCHHHHHHHhhh
Q 048152 74 ---------A-EFQP----SVHVDCTQSVCWTDEDNNLLLQL 101 (104)
Q Consensus 74 ---------~-~~~~----~~~~erkkg~pWTeeEhrlFL~~ 101 (104)
. ...+ .-+-...+|.+||++|+|.||..
T Consensus 185 ~~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~ 226 (304)
T 1ofc_X 185 IKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCM 226 (304)
T ss_dssp HHHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHH
Confidence 0 0000 00112347889999999998864
No 21
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.04 E-value=4.7e-10 Score=79.85 Aligned_cols=69 Identities=19% Similarity=0.420 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ 86 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk 86 (104)
....||.+|+.+|..++..|+. .+|..||..||| ||..+|+.||...+. | .-+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~----------p-------------~~~ 109 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKG-RIGKQCRERWHNHLN----------P-------------EVK 109 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTSTT-CCHHHHHHHHHHTTC----------T-------------TSC
T ss_pred CCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcCC-CCHHHHHHHHHHHhC----------c-------------ccc
Confidence 3467999999999999999963 579999999999 999999999987531 0 012
Q ss_pred cccCCHHHHHHHhhhc
Q 048152 87 SVCWTDEDNNLLLQLD 102 (104)
Q Consensus 87 g~pWTeeEhrlFL~~~ 102 (104)
..|||+||..++|.+.
T Consensus 110 ~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAH 125 (159)
T ss_dssp CSCCCHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHH
Confidence 3489999999999874
No 22
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.00 E-value=1e-09 Score=70.11 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHH-HcCCCCCHHHHHHHHH
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAA-MVGGTKSAEDVQKHYV 55 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~-~vpg~KS~~eV~~ryk 55 (104)
.....||.+|.++||.||+.|+++ |.+||. .||+ ||+.||+++|-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~-Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPW-KSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSS-SCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCC-CCHHHHHHHHH
Confidence 456789999999999999999985 999999 6999 99999999996
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.1e-10 Score=68.89 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHH-HcCCCCCHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAA-MVGGTKSAEDVQKHYV 55 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~-~vpg~KS~~eV~~ryk 55 (104)
...||.+|.++||.||++|+++ |.+||. .||+ ||+.||++.|=
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~-Kt~~~~v~fYY 52 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPN-KETGELITFYY 52 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTT-SCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCC-CcHHHHHHHHh
Confidence 4579999999999999999984 999999 5998 99999999994
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=1.1e-09 Score=66.96 Aligned_cols=48 Identities=15% Similarity=0.377 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
....||.|||.+|..++.+|.. .+|..||..||| ||..+|+.||..++
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPN-RTDQQCQYRWLRVL 54 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSS-SCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccC-CCHHHHHHHHHHHc
Confidence 3457999999999999999963 479999999999 99999999998753
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.97 E-value=6.5e-10 Score=66.28 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
...||.+|+.+|..++.+|+. .+|..||..||| ||..+|+.||...
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKG-RIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTT-CCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 357999999999999999963 469999999999 9999999999864
No 26
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.91 E-value=1.6e-10 Score=82.28 Aligned_cols=68 Identities=18% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS 87 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg 87 (104)
...||.|||.+|..++.+|+. ..|..||+.||| ||..+|+.||...+.. + -+.
T Consensus 6 k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p------~-----------------~~~ 58 (159)
T 1h89_C 6 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPN-RTDVQCQHRWQKVLNP------E-----------------LIK 58 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCT------T-----------------CCC
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCC-CCHHHHHHHHHHccCC------C-----------------cCC
Confidence 356999999999999999963 579999999999 9999999999865321 0 112
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.|||+||..+++.++
T Consensus 59 ~~Wt~eEd~~L~~~v 73 (159)
T 1h89_C 59 GPWTKEEDQRVIKLV 73 (159)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 489999999998875
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.86 E-value=6.1e-09 Score=62.40 Aligned_cols=46 Identities=15% Similarity=0.386 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG--GTKSAEDVQKHYVILL 58 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp--g~KS~~eV~~ryk~L~ 58 (104)
..||.||+.+|-.++..|.. ..|..||..+| | ||..+|+.||..++
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNN-RTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCC-CCHHHHHHHHHHHH
Confidence 57999999999999999963 47999999999 9 99999999999875
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.86 E-value=5.2e-09 Score=70.40 Aligned_cols=50 Identities=16% Similarity=0.418 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
...||.||+.+|..++..|+. +|..||..||| ||..+|+.||..|+..+.
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP----KWNKISKFLKN-RSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSS-SCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc----CHHHHHHHCCC-CCHHHHHHHHHHHHhhHH
Confidence 468999999999999999974 79999999999 999999999999987654
No 29
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.86 E-value=4.4e-09 Score=81.10 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 2 EDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 2 ~~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
+.+++....||.+|+++|+.||++|.++ |.+||..||| ||+.+|+.||..
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgT-KT~~QcKnfY~~ 176 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGN-KSVVQVKNFFVN 176 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSS-CCHHHHHHHHHH
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCC-CCHHHHHHHHHH
Confidence 3456678899999999999999999873 9999999999 999999999974
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.85 E-value=9.8e-09 Score=64.39 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=42.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 048152 3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG--GTKSAEDVQKHYVILL 58 (104)
Q Consensus 3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp--g~KS~~eV~~ryk~L~ 58 (104)
+....-..||.|||.+|..++.+|..+ .|..||..+| | ||..+|+.||..|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 6 TNITKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVN-RTAVMIKDRWRTMK 59 (64)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCC-CCHHHHHHHHHHHh
Confidence 344456689999999999999999643 5999999987 8 99999999999875
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.85 E-value=3.5e-09 Score=70.54 Aligned_cols=47 Identities=19% Similarity=0.483 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
....||.+|+.+|..++..|+. +|..||..||| ||..+|+.||..|+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPG-RTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTT-CCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3567999999999999999973 79999999999 99999999999874
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.76 E-value=1.9e-08 Score=69.44 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
...||.||+.+|..++..|+. +|.+||..||| ||..+|+.||..|+..+.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR----QWAIIAKFFPG-RTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CHHHHHTTSTT-CCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC-CCHHHHHHHHHHHHHhcC
Confidence 457999999999999999974 69999999999 999999999999987765
No 33
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.71 E-value=3.9e-08 Score=61.71 Aligned_cols=48 Identities=15% Similarity=0.356 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC--CCCCHHHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG--GTKSAEDVQKHYVILLE 59 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp--g~KS~~eV~~ryk~L~~ 59 (104)
-..||.||+.+|-.++.+|.. ..|..||..+| | ||..+|+.||..++.
T Consensus 10 r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNN-RTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSS-CCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCC-CCHHHHHHHHHHHcC
Confidence 457999999999999999963 47999999999 9 999999999998754
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.71 E-value=1e-08 Score=70.68 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
....||.||+.+|..++..|+. +|.+||..||| ||..+|+.||..|+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPG-RTDNAVKNHWNSTM 124 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGSTT-CCHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHCCC-CCHHHHHHHHHHHH
Confidence 3567999999999999999974 79999999999 99999999998764
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.14 E-value=1.9e-09 Score=71.28 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
.....||.+|+.+|..++..|+. +|..||..||| ||..+|+.||..++.-
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 34557999999999999999964 69999999999 9999999999877543
No 36
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.66 E-value=2.2e-08 Score=64.69 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
...||.||+++|..+.+.|.. +|.+||..+ | ||..+|+.||..|..++.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l-g-Rt~~q~knRw~~L~~~~~ 71 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGN----DWATIGAAL-G-RSASSVKDRCRLMKDTCN 71 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH-T-SCHHHHHHHHHHCSCCCS
T ss_pred CCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh-C-CCHHHHHHHHHHHHHHcc
Confidence 457999999999999999974 499999999 8 999999999999876543
No 37
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.65 E-value=3.8e-08 Score=65.98 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
...||.+|..+|+.+|..||+ .|.+||+.||+ ||+.||+.+|=.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCC-CCHHHHHHHHhc
Confidence 457999999999999999987 59999999999 999999999943
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.49 E-value=1.7e-07 Score=64.89 Aligned_cols=50 Identities=14% Similarity=0.362 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
...||.+|+.+|..++..|+. +|..||..||| ||..+|+.||..++.--.
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS----KWSVIAKLIPG-RTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS----CHHHHTTTSTT-CCHHHHHHHHHHTTGGGC
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC-CCHHHHHHHHHHHHHHHh
Confidence 457999999999999999974 69999999999 999999999998865443
No 39
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.29 E-value=1.2e-06 Score=73.34 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=43.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
.+++.+..||.+|..+|..+|.+|.+ .|.+||..|+. ||+.+|+.||..
T Consensus 375 ~~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT-KT~~Qvk~fy~~ 423 (482)
T 2xag_B 375 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN-KSVVQVKNFFVN 423 (482)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC-CCHHHHHHHHHH
Confidence 34556789999999999999999987 49999999988 999999999964
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.26 E-value=2.4e-06 Score=56.18 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCchHHHHHHH----cCCCCCHHHHHHHHHHHHH
Q 048152 10 GWSWEENKLFELALAVVDEQDPHRWEVVAAM----VGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~----vpg~KS~~eV~~ryk~L~~ 59 (104)
.||.||+.+|-.++.+|.. .+|.+|+.. ++| ||..+|+.||..|+.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADH-RTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCC-CCHHHHHHHHHHHHH
Confidence 6999999999999999975 379999996 899 999999999999975
No 41
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.22 E-value=4.7e-06 Score=58.47 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc----CCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccC
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV----GGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVD 83 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~e 83 (104)
-..||.+|+.+|-.+..+|.. .+|..||... +| ||..+|+.||..|+.--. |...
T Consensus 17 r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~-~~p~---------------- 75 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTAS-IAPQ---------------- 75 (121)
T ss_dssp SCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHH-TCST----------------
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhc-cCCc----------------
Confidence 456999999999999999964 4799999995 88 999999999999976422 2111
Q ss_pred CcccccCCHHHHHHHhh
Q 048152 84 CTQSVCWTDEDNNLLLQ 100 (104)
Q Consensus 84 rkkg~pWTeeEhrlFL~ 100 (104)
-++|.||++++-...+.
T Consensus 76 ~krg~~~p~e~~~rv~~ 92 (121)
T 2juh_A 76 QRRGEPVPQDLLDRVLA 92 (121)
T ss_dssp TCCCSCCCHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHH
Confidence 12367899987544443
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.97 E-value=2.2e-05 Score=53.18 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
-.||+++|+..-.+..+-.. +++.|..||..++. ||.+||..||++|+.-+.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~N-ks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGA-QPHTFSVISQQLGN-KTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSS-CCHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHH
Confidence 35999999988777776543 68999999999988 999999999999977664
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.93 E-value=2.8e-05 Score=49.00 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=44.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHH---HHcCCCCCHHHHHHHHHHHH
Q 048152 3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVA---AMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA---~~vpg~KS~~eV~~ryk~L~ 58 (104)
+.+.....||.||+..|.....+|.. .|..|+ ..++| ||..+++.+|..|.
T Consensus 3 ~~~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~-RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 3 SGSSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKG-RRAVDLAHKYHRLI 56 (62)
T ss_dssp CCCCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccC-cccchHHHHHHHHH
Confidence 34556678999999999999999964 699999 46788 99999999999984
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.91 E-value=1.8e-05 Score=54.15 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc----CCCCCHHHHHHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV----GGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~ 59 (104)
....||.||+.+|-.++.+|.. .+|..|+... +| ||..+|+.+|..|+.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk 64 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADH-RTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCC-CCHHHHHHHHHHHHh
Confidence 4567999999999999999975 3699999976 78 999999999999974
No 45
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.83 E-value=3.8e-05 Score=53.85 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc----CCCCCHHHHHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV----GGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~ 59 (104)
...||.||+.+|-.+..+|.. .+|..|+... +| ||..+|+.+|..|+.
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk 82 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHH-RTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCC-CCHHHHHHHHHHHHh
Confidence 457999999999999999975 4799999985 88 999999999999975
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.74 E-value=8.7e-05 Score=49.93 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc-----CCCCCHHHHHHHHHHHHHhhhhh
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMV-----GGTKSAEDVQKHYVILLEDLQFI 64 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v-----pg~KS~~eV~~ryk~L~~dV~~I 64 (104)
..||.||...|=....+|+. ||-.|+... ++ ||+++++.||-.++.-+...
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~-Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKK-RSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999987 999999999 56 99999999999998766543
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.92 E-value=4.3e-06 Score=53.91 Aligned_cols=51 Identities=14% Similarity=0.310 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
-.||+|||+..-.+..+-.. +++.|..||..+ + ||.+||..||++|+.-+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-D-KNPNQVSERFQQLMKLFE 65 (70)
Confidence 35999999987666655432 578999999999 7 999999999999976553
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.57 E-value=5.9e-05 Score=58.49 Aligned_cols=52 Identities=8% Similarity=0.193 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC--CCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 8 FCGWSWEENKLFELALAVVDEQ--DPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~--~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
...||.|||.++-.+..+|+.. +..-|..||..||| ||..+|+.||..++..
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhh
Confidence 4579999999999999999753 22239999999999 9999999999986544
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.49 E-value=1.5e-05 Score=66.69 Aligned_cols=43 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHH
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ry 54 (104)
....||.+|.++|+.+|..|+++ |.+|+..||+ ||+.+|+++|
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKd----F~~I~~~lp~-Ksv~e~V~yY 230 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKT----FHRIQQMLPD-KSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCcc----HHHHHHHcCC-CCHHHHHHHh
Confidence 34579999999999999999985 7999999999 9999999885
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.40 E-value=0.00039 Score=50.58 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHH--cCCCCCHHHHHHHHHHHHHhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAM--VGGTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~--vpg~KS~~eV~~ryk~L~~dV 61 (104)
...||..|-+.|.+|+.+|+ ...+||+.|++. +.+ ||.++|+..|+.+..-+
T Consensus 7 ~~~~t~~E~r~fira~~kfG-~~~~r~~~I~~da~L~~-Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFG-GPLERLDAIARDAELVD-KSETDLRRLGELVHNGC 60 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCS-SGGGCHHHHHHHTTCTT-SCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC-CchhHHHHHHHHhccCC-CCHHHHHHHHHHHHHHH
Confidence 45799999999999999996 245899999975 778 99999999888887664
No 51
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.00023 Score=43.54 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.0
Q ss_pred CccccCCcccccCCHHHHHHHhhhc
Q 048152 78 PSVHVDCTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 78 ~~~~~erkkg~pWTeeEhrlFL~~~ 102 (104)
+++..+|+...|||+|||++|+.+.
T Consensus 3 ~~~~~~r~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 3 SGSSGDRQFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp CSCCCCCSCCCSCCHHHHHHHHHHH
T ss_pred CccccccccCCCCCHHHHHHHHHHH
Confidence 3456788899999999999999864
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.77 E-value=0.0049 Score=50.14 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHHHHhhhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVILLEDLQFI 64 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L~~dV~~I 64 (104)
-..||.-|=..|-+|+++|.. +.-+.||+.|. | ||.+||.+.++.+.+-...|
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR---~d~~~IA~ev~~~-Kt~eEV~~Y~~vFw~Ry~Ei 176 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGR---NSIQAIARELAPG-KTLEEVRAYAKAFWSNIERI 176 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCT---TCHHHHHSSCCCS-SSHHHHHHHHHHHHHTCSSC
T ss_pred hcccCHHHHHHHHHHHHHhCH---hHHHHHHHHHccC-CCHHHHHHHHHHHHHhhhhh
Confidence 356999999999999999987 34789999998 6 99999998888886655443
No 53
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.72 E-value=0.0059 Score=41.02 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC----CCCCHHHHHHHHHHHHHhhhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG----GTKSAEDVQKHYVILLEDLQFI 64 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp----g~KS~~eV~~ryk~L~~dV~~I 64 (104)
...||.+|-..|=.....|+. ||--|+.... +.||++|++.||-.++..+...
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999987 9999999975 1399999999999998777644
No 54
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.27 E-value=0.011 Score=36.10 Aligned_cols=47 Identities=6% Similarity=0.131 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCC-----CCchHHHHHH-HcCCCCCHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQ-----DPHRWEVVAA-MVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~-----~pdRWekIA~-~vpg~KS~~eV~~ryk~ 56 (104)
..+|.|||.++-.-++.|... ...-|..+|+ .+|+ .|...++.||..
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHH
Confidence 469999999999999998432 3468999999 8999 999999999975
No 55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.25 E-value=0.016 Score=37.00 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cC--CCCCchHHHHHHHcC---CCCCHHHHHHHHHHHHHhhhhhcCC
Q 048152 6 KVFCGWSWEENKLFELALAV----VD--EQDPHRWEVVAAMVG---GTKSAEDVQKHYVILLEDLQFIESG 67 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~----~p--~~~pdRWekIA~~vp---g~KS~~eV~~ryk~L~~dV~~IEsG 67 (104)
+....||.+|-++|-.+... |. ......|+.||..|- -.+|+.+|+.+++.|...-+.|...
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999998865 22 223458999999864 1399999999999999998877654
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.66 E-value=0.025 Score=44.73 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC------------CCCCHHHHHHHHHHHHHhh
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG------------GTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp------------g~KS~~eV~~ryk~L~~dV 61 (104)
....||.+||+.|-.+|-+|.-+.++-|++|-..|. . +|+.+|.+|+..|+.-|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kS-RTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKS-RTALELQRRCNTLITLI 276 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHT-CCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhc-CCHHHHHHHHHHHHHHH
Confidence 456899999999999999999989999999985543 4 99999999999997665
No 57
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.04 E-value=0.014 Score=35.73 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=14.8
Q ss_pred CcccccCCHHHHHHHhhh
Q 048152 84 CTQSVCWTDEDNNLLLQL 101 (104)
Q Consensus 84 rkkg~pWTeeEhrlFL~~ 101 (104)
+.+..+||+|||++|+.+
T Consensus 6 ~~~~~~WT~eE~~~Fe~~ 23 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKG 23 (63)
T ss_dssp CCCCCSCCHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHH
Confidence 444678999999999875
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.58 E-value=0.12 Score=39.96 Aligned_cols=40 Identities=5% Similarity=0.018 Sum_probs=28.7
Q ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHHHhh----------hhhcCCCCCCcc
Q 048152 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDL----------QFIESGKLDHKL 73 (104)
Q Consensus 33 RWekIA~~vpg~KS~~eV~~ryk~L~~dV----------~~IEsG~v~~~~ 73 (104)
.|..||+.+|+ +|....+.||..++.+. ..++.|.+|.|+
T Consensus 173 ~fk~ia~~~P~-HT~~SWRdRyrKfl~~~gi~~yi~yye~~~~~~~~p~~~ 222 (246)
T 1ign_A 173 FFKHFAEEHAA-HTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPM 222 (246)
T ss_dssp HHHHHHHHTTT-SCHHHHHHHHHHTHHHHCHHHHHHHHHTC-------CCC
T ss_pred HHHHHHHHCCC-CChhhHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCccc
Confidence 89999999999 99999999999887665 224788888775
No 59
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.56 E-value=0.099 Score=40.57 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHH--cCCCCCHHHHHHHHHHHHHhhh
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAM--VGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~--vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
..||..|.+.|-+|+.+|+. ..+||+.|+.. ++. |+.+.+++-|..|++-+.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~-~~~R~e~I~~dA~L~~-ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGN-LKEILDELIADGTLPV-KSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSS-CTTCHHHHHHTTSSCC-CCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhccccc-CCHHHHHHHHHHHHHHHH
Confidence 45999999999999999962 45699999754 677 999999998888865543
No 60
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.47 E-value=0.27 Score=30.70 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHH--cCCCCCHHHHHHHHHHHHHhhh
Q 048152 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAM--VGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~--vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.+..-.||.|....|-.|+.++.. .---+.+|... |+| .|...|+.|.+.---.++
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~g-LT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDK-LTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTT-CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCC-CCHHHHHHHHHHHHHHHH
Confidence 344557999999999999999862 33346777776 567 899999999876654444
No 61
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=93.54 E-value=0.047 Score=34.94 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.0
Q ss_pred CCcccccCCHHHHHHHhhhc
Q 048152 83 DCTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 83 erkkg~pWTeeEhrlFL~~~ 102 (104)
......+||+||+.+||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v 33 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEAL 33 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHHHH
Confidence 34446799999999999875
No 62
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.47 E-value=0.04 Score=34.54 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.0
Q ss_pred CCcccccCCHHHHHHHhhhc
Q 048152 83 DCTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 83 erkkg~pWTeeEhrlFL~~~ 102 (104)
.++..+.||+|.|+.|+.|+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av 22 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAV 22 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHH
Confidence 35667899999999999986
No 63
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.32 E-value=0.045 Score=34.25 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.0
Q ss_pred CcccccCCHHHHHHHhhh
Q 048152 84 CTQSVCWTDEDNNLLLQL 101 (104)
Q Consensus 84 rkkg~pWTeeEhrlFL~~ 101 (104)
|+...+||+||+++|+.+
T Consensus 5 r~~~~~WT~eE~~~Fe~~ 22 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEA 22 (70)
T ss_dssp CCSSCCCCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHH
Confidence 455668999999999975
No 64
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.04 E-value=0.061 Score=33.33 Aligned_cols=14 Identities=43% Similarity=0.522 Sum_probs=12.8
Q ss_pred cCCHHHHHHHhhhc
Q 048152 89 CWTDEDNNLLLQLD 102 (104)
Q Consensus 89 pWTeeEhrlFL~~~ 102 (104)
+||+||+.+|+.++
T Consensus 10 ~WT~eEd~~L~~~v 23 (75)
T 2yum_A 10 LWTVEEQKKLEQLL 23 (75)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999875
No 65
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.84 E-value=0.075 Score=32.85 Aligned_cols=16 Identities=44% Similarity=0.443 Sum_probs=13.7
Q ss_pred cccCCHHHHHHHhhhc
Q 048152 87 SVCWTDEDNNLLLQLD 102 (104)
Q Consensus 87 g~pWTeeEhrlFL~~~ 102 (104)
..|||+||+.+||.++
T Consensus 9 ~~~WT~eEd~~l~~~~ 24 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGL 24 (72)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3489999999999874
No 66
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=90.95 E-value=0.6 Score=37.92 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc------------CCCCCHHHHHHHHHHHHHhh
Q 048152 7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV------------GGTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v------------pg~KS~~eV~~ryk~L~~dV 61 (104)
....||.+||+.|-.+|-+|.-+.++-|++|-..| -. +|+.++.+|+..|+.-|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kS-RT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRS-RTPVELARRGNTLLQCL 292 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHT-CCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhc-CCHHHHHHHHHHHHHHH
Confidence 45679999999999999999988889999997774 34 89999999999998665
No 67
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=89.33 E-value=0.15 Score=33.52 Aligned_cols=17 Identities=6% Similarity=0.327 Sum_probs=13.9
Q ss_pred cccccCCHHHHHHHhhh
Q 048152 85 TQSVCWTDEDNNLLLQL 101 (104)
Q Consensus 85 kkg~pWTeeEhrlFL~~ 101 (104)
.-..+||+|||++|..+
T Consensus 41 ~~~~~WT~eE~~~F~~~ 57 (94)
T 4a69_C 41 QVMNMWSEQEKETFREK 57 (94)
T ss_dssp HHTCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 34567999999999875
No 68
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=89.31 E-value=0.26 Score=31.08 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.1
Q ss_pred CcccccCCHHHHHHHhhhc
Q 048152 84 CTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 84 rkkg~pWTeeEhrlFL~~~ 102 (104)
+....+||.||.++|+.|.
T Consensus 15 ~~~~~~WT~eEd~~L~~al 33 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELAL 33 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHH
Confidence 3345689999999999874
No 69
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=88.58 E-value=0.15 Score=32.87 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=12.3
Q ss_pred CcccccCCHHHHHHHhhh
Q 048152 84 CTQSVCWTDEDNNLLLQL 101 (104)
Q Consensus 84 rkkg~pWTeeEhrlFL~~ 101 (104)
+..+.+||.+|+++|..|
T Consensus 17 ~~ss~~WT~eE~K~FE~A 34 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIA 34 (74)
T ss_dssp -----CCCTTHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 334678999999999987
No 70
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=88.30 E-value=0.2 Score=29.77 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=12.7
Q ss_pred cCCHHHHHHHhhhc
Q 048152 89 CWTDEDNNLLLQLD 102 (104)
Q Consensus 89 pWTeeEhrlFL~~~ 102 (104)
+||+||..+||.++
T Consensus 11 ~WT~eED~~L~~~v 24 (58)
T 2elk_A 11 NWGADEELLLIDAC 24 (58)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999875
No 71
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=87.97 E-value=0.22 Score=29.68 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.2
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.+||+||..+||.++
T Consensus 9 ~~WT~eED~~L~~~v 23 (60)
T 1x41_A 9 PSWTAQEEMALLEAV 23 (60)
T ss_dssp SSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 479999999999875
No 72
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.91 E-value=0.28 Score=30.85 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.6
Q ss_pred cccCCHHHHHHHhhhc
Q 048152 87 SVCWTDEDNNLLLQLD 102 (104)
Q Consensus 87 g~pWTeeEhrlFL~~~ 102 (104)
+-+||.||+++|..|.
T Consensus 8 ~~~WT~eE~k~fe~al 23 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSM 23 (72)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4479999999999874
No 73
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=87.00 E-value=1.2 Score=34.21 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.9
Q ss_pred CCcccccCCHHHHHHHhhh
Q 048152 83 DCTQSVCWTDEDNNLLLQL 101 (104)
Q Consensus 83 erkkg~pWTeeEhrlFL~~ 101 (104)
.++.+.+||+||+++|+++
T Consensus 129 ~~k~s~~WTeEE~~lFleA 147 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQA 147 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHH
Confidence 3456779999999999986
No 74
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=86.23 E-value=0.32 Score=27.91 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=13.1
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
-|||+||..+|+.++
T Consensus 4 ~~Wt~eED~~L~~~v 18 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLV 18 (52)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 389999999999875
No 75
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=86.14 E-value=0.32 Score=27.81 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=13.1
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.|||.||..+|+.++
T Consensus 4 ~~Wt~eED~~L~~~v 18 (52)
T 1guu_A 4 TRWTREEDEKLKKLV 18 (52)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999875
No 76
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=85.38 E-value=0.36 Score=30.73 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=12.3
Q ss_pred ccCCHHHHHHHhhh
Q 048152 88 VCWTDEDNNLLLQL 101 (104)
Q Consensus 88 ~pWTeeEhrlFL~~ 101 (104)
-+||++|+++|+.+
T Consensus 9 ~~WT~eE~k~fe~A 22 (73)
T 1wgx_A 9 KEWNEKELQKLHCA 22 (73)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 47999999999875
No 77
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=84.40 E-value=5.6 Score=28.30 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC------------CCC--CHHHHHHHHHHHHHhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG------------GTK--SAEDVQKHYVILLEDL 61 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp------------g~K--S~~eV~~ryk~L~~dV 61 (104)
++.||.++|+.|=..+.+|.-+ +|+.|-...- . | ++.++.+|...|+.-+
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g---~w~~Ir~D~~l~~~~k~~~~~~~-k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYG---SWEMIKMDPDLSLTHKILPDDPD-KKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTT---CHHHHHHCSSSSCTTTSSCSSTT-SSCCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcC---cHHHHHhChhcCccccccccccc-cCCChHHHHHHHHHHHHHH
Confidence 5679999999999999999754 4999987431 2 3 3678999998887655
No 78
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=83.52 E-value=0.49 Score=27.86 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.2
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.|||+||..+|+.++
T Consensus 9 ~~Wt~eED~~L~~~v 23 (60)
T 2d9a_A 9 VKWTHEEDEQLRALV 23 (60)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999875
No 79
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=83.31 E-value=0.59 Score=26.95 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=13.0
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
-|||+||..+++.++
T Consensus 3 ~~WT~eEd~~L~~~v 17 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGV 17 (53)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999998875
No 80
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=82.74 E-value=0.83 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=15.9
Q ss_pred CCcccccCCHHHHHHHhhhc
Q 048152 83 DCTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 83 erkkg~pWTeeEhrlFL~~~ 102 (104)
.+++-.|||+||-.+++.++
T Consensus 6 ~~~~r~~WT~eED~~L~~~v 25 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGV 25 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 34556689999999999875
No 81
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.38 E-value=0.66 Score=27.87 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.0
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.|||+||..+++.++
T Consensus 10 ~~WT~eED~~L~~~~ 24 (66)
T 2din_A 10 TEWSREEEEKLLHLA 24 (66)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999874
No 82
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=80.92 E-value=0.36 Score=31.09 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.5
Q ss_pred cccCCHHHHHHHhhhc
Q 048152 87 SVCWTDEDNNLLLQLD 102 (104)
Q Consensus 87 g~pWTeeEhrlFL~~~ 102 (104)
.-|||+||..+|+.++
T Consensus 16 ~~~WT~eEd~~l~~~~ 31 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGL 31 (89)
Confidence 3489999999999875
No 83
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=77.91 E-value=1.5 Score=27.12 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.7
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
-|||+||-..+|..+
T Consensus 9 ~~WT~EE~~~L~~gV 23 (62)
T 1x58_A 9 KDFTKEEVNYLFHGV 23 (62)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999998764
No 84
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=77.59 E-value=1.2 Score=27.11 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=13.2
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
.+||+||-.+++.++
T Consensus 12 ~~WT~eED~~L~~~V 26 (64)
T 3sjm_A 12 QKWTVEESEWVKAGV 26 (64)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999875
No 85
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.50 E-value=1.8 Score=26.10 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=13.1
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
-+||+||..+++.++
T Consensus 10 ~~Wt~eED~~L~~~v 24 (70)
T 2dim_A 10 GVWRNTEDEILKAAV 24 (70)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999875
No 86
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=71.96 E-value=1.7 Score=27.29 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=13.0
Q ss_pred ccCCHHHHHHHhhhc
Q 048152 88 VCWTDEDNNLLLQLD 102 (104)
Q Consensus 88 ~pWTeeEhrlFL~~~ 102 (104)
-|||+||-.+++.++
T Consensus 24 ~~wT~EED~~L~~l~ 38 (73)
T 2llk_A 24 GKYTPEEIEKLKELR 38 (73)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 389999999999874
No 87
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=54.75 E-value=38 Score=21.81 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC
Q 048152 7 VFCGWSWEENKLFELALAVVDEQ 29 (104)
Q Consensus 7 ~~~~WT~eE~k~fE~ALa~~p~~ 29 (104)
....|+.+=..+|..||+.||+.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~ 27 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPC 27 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSS
T ss_pred cCCcCCHHHHHHHHHHHHHcCCC
Confidence 35679999999999999999853
No 88
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=54.39 E-value=12 Score=25.71 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=16.7
Q ss_pred cCCcccccCCHHHHHHHhhhc
Q 048152 82 VDCTQSVCWTDEDNNLLLQLD 102 (104)
Q Consensus 82 ~erkkg~pWTeeEhrlFL~~~ 102 (104)
..+++-.|||.||-..++.++
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV 46 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAV 46 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH
Confidence 356667799999999988764
No 89
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=52.40 E-value=20 Score=27.57 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=26.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHH
Q 048152 5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAA 39 (104)
Q Consensus 5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~ 39 (104)
+.-++.|+.+||..|-..+-+|.-|. |+.|-.
T Consensus 165 ~~W~c~W~~~dD~~LLvGIykyGyG~---We~Ir~ 196 (270)
T 2xb0_X 165 QNWSSNWTKEEDEKLLIGVFKYGYGS---WTQIRD 196 (270)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHcCCc---HHHHhc
Confidence 33467899999999999999997655 888864
No 90
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=44.33 E-value=13 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=24.2
Q ss_pred chHHHHHHHcCCCC--C-HHHHHHHHHHHHHhhhhhcC
Q 048152 32 HRWEVVAAMVGGTK--S-AEDVQKHYVILLEDLQFIES 66 (104)
Q Consensus 32 dRWekIA~~vpg~K--S-~~eV~~ryk~L~~dV~~IEs 66 (104)
..|..||..++-.. + ...++.+|...+.......+
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~~ 95 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQS 95 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHHC
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999986422 2 56888999877665544433
No 91
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.30 E-value=55 Score=20.24 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.-.||.++...+...+. ..+-++-+. .-++ -|.++|++.|..|+.-+.
T Consensus 9 ~~~~s~~~~~~~~~~~~-----~~~~y~iLg-v~~~-as~~eIk~aYr~la~~~H 56 (90)
T 2ys8_A 9 SASFTKEQADAIRRIRN-----SKDSWDMLG-VKPG-ASRDEVNKAYRKLAVLLH 56 (90)
T ss_dssp CCCCCHHHHHHHHHHHT-----CSSHHHHHT-CCTT-CCHHHHHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHhc-----CCCHHHHcC-cCCC-CCHHHHHHHHHHHHHHHC
Confidence 34699999888887653 344455444 2334 889999999999976553
No 92
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.80 E-value=8.8 Score=21.62 Aligned_cols=10 Identities=50% Similarity=0.846 Sum_probs=7.8
Q ss_pred HHHHHHHhhh
Q 048152 92 DEDNNLLLQL 101 (104)
Q Consensus 92 eeEhrlFL~~ 101 (104)
+|-|-|||++
T Consensus 29 eEKHQLFlQL 38 (38)
T 2l5g_A 29 EEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 6788888875
No 93
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.74 E-value=56 Score=20.51 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152 13 WEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL 58 (104)
Q Consensus 13 ~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~ 58 (104)
.++..+|+.++++-+.-+.+.-.+||..+ | -+.+-|+.=|....
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l-g-L~~~VVrVWFqNrR 57 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV-G-LPQEFVKEWFEQRK 57 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH-T-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh-C-CCHHHHHHHHhhcc
Confidence 46789999999999988888999999999 4 88888887776654
No 94
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=42.13 E-value=43 Score=21.40 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=26.2
Q ss_pred chHHHHHHHcCCCCC---HHHHHHHHHHHHHhhhhhcCC
Q 048152 32 HRWEVVAAMVGGTKS---AEDVQKHYVILLEDLQFIESG 67 (104)
Q Consensus 32 dRWekIA~~vpg~KS---~~eV~~ryk~L~~dV~~IEsG 67 (104)
..|..||..++-..+ ...++.+|...+.......+|
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 489999999965222 578999999888776554443
No 95
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.13 E-value=77 Score=20.87 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMV 41 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v 41 (104)
..||..+...||.++..-+--+...-+.||..+
T Consensus 11 t~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 11 FKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 469999999999999876644566778999999
No 96
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=40.11 E-value=16 Score=24.67 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCCCCch----HHHHHHHcCCCCCHHHHHHHHH
Q 048152 14 EENKLFELALAVVDEQDPHR----WEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 14 eE~k~fE~ALa~~p~~~pdR----WekIA~~vpg~KS~~eV~~ryk 55 (104)
++..+|+-.+|..--+-..- =..||..+-| ||++|+++.|.
T Consensus 90 d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg-kt~eeiR~~f~ 134 (141)
T 1fs1_B 90 DQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIRKTFN 134 (141)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHHHcC
Confidence 46778888888642222211 1689999999 99999988775
No 97
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=40.02 E-value=27 Score=22.15 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 34 WEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 34 WekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
|+.=. .+.| .|.+|.++.|-.|++.+.
T Consensus 58 w~AW~-~l~g-ms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 58 YEAWK-SVEN-LNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HHHHH-HTTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HhcC-CCHHHHHHHHHHHHHHHc
Confidence 44433 3577 999999999999998875
No 98
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=38.89 E-value=3.6 Score=27.97 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=9.1
Q ss_pred hhhhcCCCCCCc
Q 048152 61 LQFIESGKLDHK 72 (104)
Q Consensus 61 V~~IEsG~v~~~ 72 (104)
|..|+||.+|.-
T Consensus 13 ~~qi~sg~ypGL 24 (113)
T 2irf_G 13 EEQINSNTIPGL 24 (113)
T ss_dssp HHHHHTTCSTTC
T ss_pred HHHhccCCCCCc
Confidence 567899999733
No 99
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=38.48 E-value=71 Score=20.28 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048152 15 ENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 15 E~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~ 59 (104)
|.++|+- +..||.|-.+ +-+...+|+ -++++...--+.|+.
T Consensus 16 e~~IL~l-~~~~P~GItd--~~L~~~~p~-~~~~~r~~aIN~LL~ 56 (81)
T 2dk8_A 16 ENRIIEL-CHQFPHGITD--QVIQNEMPH-IEAQQRAVAINRLLS 56 (81)
T ss_dssp HHHHHHH-HHHCSSCEEH--HHHHHHCTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCCCCCH--HHHHHHCCC-CCHHHHHHHHHHHHH
Confidence 5555554 4789988877 779999998 999998888888865
No 100
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=38.08 E-value=3.5 Score=28.32 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=9.1
Q ss_pred hhhhcCCCCCCc
Q 048152 61 LQFIESGKLDHK 72 (104)
Q Consensus 61 V~~IEsG~v~~~ 72 (104)
|..|+||.+|.-
T Consensus 16 ~~qidsg~ypGl 27 (116)
T 3qu6_A 16 VSQLDLGQLEGV 27 (116)
T ss_dssp HHHHHHTCSTTC
T ss_pred HHHhccCCcCCc
Confidence 567899999733
No 101
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=37.79 E-value=52 Score=19.38 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
..+|+.-|..++-...--|+.||..-.| -|..|+..-.++-
T Consensus 9 ~~Il~~~l~~~~~~~~~dl~~la~~t~G-~SGADi~~l~~eA 49 (78)
T 3kw6_A 9 LDILKIHSRKMNLTRGINLRKIAELMPG-ASGAEVKGVCTEA 49 (78)
T ss_dssp HHHHHHHHTTSEECTTCCHHHHHHTCTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 4678888888876555569999999999 9999988766543
No 102
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=36.85 E-value=16 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 048152 45 KSAEDVQKHYVILLEDLQFIESGKLDHK 72 (104)
Q Consensus 45 KS~~eV~~ryk~L~~dV~~IEsG~v~~~ 72 (104)
||++.+.++|..+-.++..|+-|.++-+
T Consensus 18 ksv~~~~kkl~~~~~el~~iekGFL~ke 45 (114)
T 1hx1_B 18 KSVEKIADQLEELNKELTGIQQGFLPKD 45 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence 8899999999999999999999999765
No 103
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=36.08 E-value=45 Score=22.35 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=26.7
Q ss_pred CchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 31 PHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 31 pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
...|..||..++- -+...++.+|...+.....
T Consensus 69 ~k~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 69 TQQWSMVAQRLQI-SDYQQLESIYFRILLPYER 100 (123)
T ss_dssp SHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHCC-ChHHHHHHHHHHHHHHHHH
Confidence 3699999999987 6689999999988776654
No 104
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=34.33 E-value=23 Score=24.91 Aligned_cols=28 Identities=32% Similarity=0.371 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 048152 45 KSAEDVQKHYVILLEDLQFIESGKLDHK 72 (104)
Q Consensus 45 KS~~eV~~ryk~L~~dV~~IEsG~v~~~ 72 (104)
+|++.+.++|..+-.++..|+.|.++-+
T Consensus 28 ksv~~~~k~l~~l~~el~~iekGFL~k~ 55 (135)
T 1i6z_A 28 VSAEKIANHLQELNKELSGIQQGFLAKE 55 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 7888999999999999999999998755
No 105
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=33.78 E-value=28 Score=24.31 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCc----hHHHHHHHcCCCCCHHHHHHHHH
Q 048152 12 SWEENKLFELALAVVDEQDPH----RWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 12 T~eE~k~fE~ALa~~p~~~pd----RWekIA~~vpg~KS~~eV~~ryk 55 (104)
.-++..+|+-.+|..--+-.. -=..||..+-| ||++|+++.|.
T Consensus 100 ~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikg-ktpeeiR~~f~ 146 (169)
T 3v7d_A 100 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRG-RSPEEIRRTFN 146 (169)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcC-CCHHHHHHHcC
Confidence 456788999999985443332 23678999999 99999998764
No 106
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=33.44 E-value=36 Score=21.53 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q 048152 41 VGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 41 vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
+.| .|.+|.++.|-.|++.+.
T Consensus 62 l~g-ms~eeA~~~Yi~~v~~l~ 82 (87)
T 2cb8_A 62 LKG-TSKEDAMKAYINKVEELK 82 (87)
T ss_dssp TTT-CCHHHHHHHHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHHHHHHH
Confidence 477 999999999999998875
No 107
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=33.04 E-value=40 Score=21.97 Aligned_cols=28 Identities=39% Similarity=0.698 Sum_probs=21.7
Q ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 33 RWekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.|+.=.+ +.| .|.+|.++.|-.|++.+.
T Consensus 64 Kw~AW~~-l~g-mS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 64 KWEAWNA-LRG-MSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp HHHHHHH-TTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hcC-CCHHHHHHHHHHHHHHHh
Confidence 3444443 467 999999999999998875
No 108
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=32.82 E-value=67 Score=19.05 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
..+|+.-|..++-...--|+.||..-.| -|-.|+..-.+.-
T Consensus 7 ~~Il~~~l~~~~~~~~vdl~~la~~t~G-~SGADi~~l~~eA 47 (83)
T 3aji_B 7 RLIFSTITSKMNLSEEVDLEDYVARPDK-ISGADINSICQES 47 (83)
T ss_dssp HHHHHHHHTTSCBCTTCCTHHHHTSSCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccCHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 4567788888875545569999999999 9999998866543
No 109
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=32.61 E-value=29 Score=21.89 Aligned_cols=27 Identities=41% Similarity=0.775 Sum_probs=21.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 34 WEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 34 WekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
|+.=.+ +.| .|.+|.++.|-.|++.+.
T Consensus 55 w~AW~~-l~g-ms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 55 WEAWEN-LKG-KSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHHT-TTT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCC-CCHHHHHHHHHHHHHHHh
Confidence 444333 577 999999999999998875
No 110
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=32.17 E-value=39 Score=19.68 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHhhhhhcCCC
Q 048152 45 KSAEDVQKHYVILLEDLQFIESGK 68 (104)
Q Consensus 45 KS~~eV~~ryk~L~~dV~~IEsG~ 68 (104)
+.-+.+++-+.+|++.|+..|+|.
T Consensus 22 ~~he~l~k~~~ell~evkkseagh 45 (50)
T 3qf7_D 22 ENHEKLLKILDELLDEVKKSEAGH 45 (50)
T ss_dssp TTHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHHHHhhccc
Confidence 457889999999999999999985
No 111
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.93 E-value=4.4 Score=27.80 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=8.7
Q ss_pred hhhhcCCCCCC
Q 048152 61 LQFIESGKLDH 71 (104)
Q Consensus 61 V~~IEsG~v~~ 71 (104)
|..||||.+|.
T Consensus 14 ~~qidsg~ypG 24 (121)
T 2dll_A 14 IDQIDSGKYPG 24 (121)
T ss_dssp HHHHHHTCSSS
T ss_pred HHHhccCCCCC
Confidence 56789999974
No 112
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=31.92 E-value=42 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=30.8
Q ss_pred chHHHHHHHcCCCCC----HHHHHHHHHHHHHhhhhhcCCCCC
Q 048152 32 HRWEVVAAMVGGTKS----AEDVQKHYVILLEDLQFIESGKLD 70 (104)
Q Consensus 32 dRWekIA~~vpg~KS----~~eV~~ryk~L~~dV~~IEsG~v~ 70 (104)
..|..||..++-..+ ...++.+|...+........|..+
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~ 128 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 589999999964222 568999999998888888888664
No 113
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=31.88 E-value=4.9 Score=28.31 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=9.2
Q ss_pred hhhhcCCCCCCc
Q 048152 61 LQFIESGKLDHK 72 (104)
Q Consensus 61 V~~IEsG~v~~~ 72 (104)
|..|+||.+|.-
T Consensus 20 ~~qidSg~ypGL 31 (137)
T 3qu3_A 20 LGEVSSGQYEGL 31 (137)
T ss_dssp HHHHHHTCSTTC
T ss_pred HHHhccCCcCCc
Confidence 567899999843
No 114
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=31.73 E-value=25 Score=24.17 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCch----HHHHHHHcCCCCCHHHHHHHHH
Q 048152 12 SWEENKLFELALAVVDEQDPHR----WEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 12 T~eE~k~fE~ALa~~p~~~pdR----WekIA~~vpg~KS~~eV~~ryk 55 (104)
.-++..+|+-.+|..--+-..- =..||..+-| ||++++++.|.
T Consensus 92 ~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg-kt~eeir~~f~ 138 (160)
T 2p1m_A 92 KIDQATLFELILAANYLNIKNLLDLTCQTVADMIKG-KTPEEIRTTFN 138 (160)
T ss_dssp ---------CHHHHHHTTCHHHHHHHHHHHHHTTTT-CCHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHcC
Confidence 5678888988888743333221 1689999999 99999988654
No 115
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=31.47 E-value=41 Score=21.46 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152 34 WEVVAAMVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 34 WekIA~~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
|+.=.+ +.| .|.+|.++.|-.+++.+.
T Consensus 58 w~AW~~-l~g-~s~eeA~~~Yi~~v~~l~ 84 (89)
T 3epy_A 58 WEAWNL-KKG-LSTEDATSAYISKAKELI 84 (89)
T ss_dssp HHHHHT-TTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hhC-CCHHHHHHHHHHHHHHHh
Confidence 444333 677 999999999999998875
No 116
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.32 E-value=29 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=23.1
Q ss_pred chHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152 32 HRWEVVAAMVGGTKSAEDVQKHYVILLEDL 61 (104)
Q Consensus 32 dRWekIA~~vpg~KS~~eV~~ryk~L~~dV 61 (104)
..|..||..++- .+...++.+|...+...
T Consensus 71 ~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 71 QQWSMVAQRLQI-SDYQQLESIYFRILLPY 99 (116)
T ss_dssp TCHHHHHHHHTS-CCTTHHHHHHHHHHSHH
T ss_pred CcHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 489999999976 55788999998876543
No 117
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.25 E-value=78 Score=21.17 Aligned_cols=36 Identities=19% Similarity=0.027 Sum_probs=27.3
Q ss_pred HHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152 20 ELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60 (104)
Q Consensus 20 E~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d 60 (104)
-.+|..- .+-.+..||+.+ | -|...|.+|.+.|.+.
T Consensus 9 l~~L~~~---~~~s~~~la~~l-g-~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 9 LRILQED---STLAVADLAKKV-G-LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHTTC---SCSCHHHHHHHH-T-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHC---CCCCHHHHHHHH-C-cCHHHHHHHHHHHHHC
Confidence 3445443 344699999999 5 9999999999998653
No 118
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=30.92 E-value=43 Score=22.17 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.5
Q ss_pred HcCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 048152 40 MVGGTKSAEDVQKHYVILLEDLQFIESG 67 (104)
Q Consensus 40 ~vpg~KS~~eV~~ryk~L~~dV~~IEsG 67 (104)
.+.| .|.+|.++.|-.+++.+..- +|
T Consensus 67 ~l~g-mS~eeA~~~YI~~v~~l~~~-~~ 92 (106)
T 3fp5_A 67 SVEG-TSKEVAYQKYVEKLLEILKK-AD 92 (106)
T ss_dssp TTTT-CCHHHHHHHHHHHHHHHHHH-HC
T ss_pred HccC-CCHHHHHHHHHHHHHHHhcc-cC
Confidence 3567 99999999999999988754 44
No 119
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.89 E-value=17 Score=23.46 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=26.7
Q ss_pred chHHHHHHHcCCCCC----HHHHHHHHHHHHHhhhhhcCCCCC
Q 048152 32 HRWEVVAAMVGGTKS----AEDVQKHYVILLEDLQFIESGKLD 70 (104)
Q Consensus 32 dRWekIA~~vpg~KS----~~eV~~ryk~L~~dV~~IEsG~v~ 70 (104)
..|..||..++-..+ ...++.+|...+......-+|..+
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~ 97 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEED 97 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTS
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 589999999964221 368999999887665554444433
No 120
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.74 E-value=41 Score=22.29 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=22.8
Q ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 33 RWekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
.|+.-.+ +.| .|.+|.++.|-.|++.+..
T Consensus 61 Kw~AW~~-l~g-ms~eeAm~~YI~lv~~l~~ 89 (109)
T 2cop_A 61 KWEAWKA-LGD-SSPSQAMQEYIAVVKKLDP 89 (109)
T ss_dssp HHHHHHS-CTT-CCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHH-hcC-CCHHHHHHHHHHHHHHHhh
Confidence 3554443 567 9999999999999998874
No 121
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.45 E-value=90 Score=18.05 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~-l~~~qV~~WFq 56 (70)
T 2dmu_A 12 TIFTDEQLEALENLFQETKYPDVGTREQLARKV-H-LREEKVEVWFK 56 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-T-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-C-CCHHHeehccc
Confidence 458999999999999986544555558899999 4 88888875553
No 122
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=27.84 E-value=18 Score=22.74 Aligned_cols=38 Identities=5% Similarity=0.127 Sum_probs=21.4
Q ss_pred chHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q 048152 32 HRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69 (104)
Q Consensus 32 dRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v 69 (104)
-+|..+|...|...|.+++..+.+.++.++..++...+
T Consensus 5 ~~~~~~~~~~~~~~t~~~i~~~l~~iia~~l~~~~~~i 42 (97)
T 3ejb_A 5 HHHHHSSGLVPRGSHMSTIEERVKKIIGEQLGVKQEEV 42 (97)
T ss_dssp -------------CCCCCHHHHHHHHHHHHSCCCTTTS
T ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCcCHHHC
Confidence 47889999999889999999999999999887766555
No 123
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=27.45 E-value=84 Score=17.37 Aligned_cols=45 Identities=4% Similarity=-0.030 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++..-+--+...=+.||..+ | -|..+|.-=|+
T Consensus 5 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 49 (58)
T 1ig7_A 5 TPFTTAQLLALERKFRQKQYLSIAERAEFSSSL-S-LTETQVKIWFQ 49 (58)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-T-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-C-cCHHHhhhhhh
Confidence 458999999999999876654555558899999 5 88888876553
No 124
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=27.41 E-value=77 Score=21.00 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=27.6
Q ss_pred chHHHHHHHcCCCCC----HHHHHHHHHHHHHhhhhhcCCC
Q 048152 32 HRWEVVAAMVGGTKS----AEDVQKHYVILLEDLQFIESGK 68 (104)
Q Consensus 32 dRWekIA~~vpg~KS----~~eV~~ryk~L~~dV~~IEsG~ 68 (104)
..|..||..++-..+ ...++.+|...+........|.
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~~ 114 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNL 114 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHCC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999964222 5789999998887776655553
No 125
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=27.12 E-value=78 Score=20.94 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=29.0
Q ss_pred chHHHHHHHcCCCCC---HHHHHHHHHHHHHhhhh-hcCCCCC
Q 048152 32 HRWEVVAAMVGGTKS---AEDVQKHYVILLEDLQF-IESGKLD 70 (104)
Q Consensus 32 dRWekIA~~vpg~KS---~~eV~~ryk~L~~dV~~-IEsG~v~ 70 (104)
..|..||..++-..+ ...++.+|...+..... ++.|..|
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~ 115 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEP 115 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999966222 46899999988777655 4677764
No 126
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=27.03 E-value=35 Score=23.24 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCCCCch----HHHHHHHcCCCCCHHHHHHHHH
Q 048152 14 EENKLFELALAVVDEQDPHR----WEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 14 eE~k~fE~ALa~~p~~~pdR----WekIA~~vpg~KS~~eV~~ryk 55 (104)
++..+|+-.+|..--+-..- =..||..+-| ||++++++.|.
T Consensus 95 d~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~g-kt~eeir~~f~ 139 (159)
T 2ast_A 95 DQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIRKTFN 139 (159)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSS-CCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHcC
Confidence 46778888888632222211 1578999999 99999988764
No 127
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=25.27 E-value=97 Score=17.33 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
-...|.++...||.++...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 50 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL-N-LPESTIKVWFQ 50 (60)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-T-SCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-C-cCHHHHHHhhH
Confidence 3468999999999999876544555558899999 5 88888875543
No 128
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.27 E-value=1.1e+02 Score=18.13 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L 57 (104)
...|.++...||.++..-+--+...=+.||..+ | -|..+|.-=|+.=
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFqNR 58 (80)
T 2dms_A 12 TTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-N-LPESRVQVWFKNR 58 (80)
T ss_dssp SSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-T-CCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-C-cCHHHhhhhhHHH
Confidence 458999999999999886544555557899999 4 8999888665543
No 129
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=25.26 E-value=98 Score=17.38 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 8 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 52 (61)
T 2hdd_A 8 TAFSSEQLARLKREFNENRYLTERRRQQLSSEL-G-LNEAQIKIWFK 52 (61)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-T-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-C-cCHHHHHHHhh
Confidence 458999999999999876644555568899999 4 88888875443
No 130
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=25.10 E-value=1.1e+02 Score=18.03 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 10 GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
..|.++...||.++...+--+...=+.||..+ | -|..+|+-=|+
T Consensus 23 ~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 66 (80)
T 2da3_A 23 TITPEQLEILYQKYLLDSNPTRKMLDHIAHEV-G-LKKRVVQVWFQ 66 (80)
T ss_dssp SCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH-T-SCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-C-cCHHHhHHHhH
Confidence 47999999999999876544445557899999 4 88888876554
No 131
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=24.60 E-value=1.1e+02 Score=17.64 Aligned_cols=45 Identities=4% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++..-+--+...=+.||..+ | -|..+|.-=|+
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~-l~~~qV~~WFq 56 (70)
T 2da1_A 12 TRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-G-LPQKVIKHWFR 56 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-C-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-C-CCHHHHHHHhh
Confidence 458999999999999875544555568899999 4 88888876554
No 132
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=24.56 E-value=43 Score=22.05 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=25.6
Q ss_pred chHHHHHHHcCCCCC----HHHHHHHHHHHHHhhhhhcCC
Q 048152 32 HRWEVVAAMVGGTKS----AEDVQKHYVILLEDLQFIESG 67 (104)
Q Consensus 32 dRWekIA~~vpg~KS----~~eV~~ryk~L~~dV~~IEsG 67 (104)
..|..||..++- .+ ...++.+|...+.......+|
T Consensus 62 ~~W~~Va~~lg~-~~~~~a~~~Lk~~Y~k~L~~yE~~~~~ 100 (117)
T 2jrz_A 62 RRWARVAQRLNY-PPGKNIGSLLRSHYERIVYPYEMYQSG 100 (117)
T ss_dssp TTHHHHHHHTTC-CTTCTHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CcHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999965 32 568999999887666544433
No 133
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.38 E-value=1.3e+02 Score=18.48 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048152 15 ENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 15 E~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~ 59 (104)
+.+++ .+|...+.+..-.=..||..+ | -|...|.++-..|.+
T Consensus 12 ~~~IL-~~L~~~~pg~~~t~~eLA~~L-g-vsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 12 EQRIL-KFLEELGEGKATTAHDLSGKL-G-TPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHH-HHHHHHCTTCCBCHHHHHHHH-T-CCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHcCCCCCcCHHHHHHHH-C-cCHHHHHHHHHHHHH
Confidence 44444 667777766666678999999 4 899999999888864
No 134
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.15 E-value=1.2e+02 Score=18.05 Aligned_cols=45 Identities=13% Similarity=-0.022 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++...+--+...=+.||..+ | -|..+|+-=|+
T Consensus 22 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~-L~~~qV~vWFq 66 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-G-LSQLQVKTWYQ 66 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-C-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-C-CCHHHeeeccH
Confidence 348999999999999986544445558899999 4 88888876554
No 135
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.87 E-value=1.1e+02 Score=17.64 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++..-+--+...=+.||..+ | -|..+|.-=|+
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~-l~~~qV~~WFq 56 (70)
T 2cra_A 12 IPYSKGQLRELEREYAANKFITKDKRRKISAAT-S-LSERQITIWFQ 56 (70)
T ss_dssp CCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-C-CCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-C-CCHHHhhHhhH
Confidence 458999999999999876544555558899999 5 88888876554
No 136
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=23.84 E-value=79 Score=19.39 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI 56 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~ 56 (104)
..+|+.-|..++-+..-.|+.||+.-.| -|-.|+..-.++
T Consensus 17 ~~IL~~~l~~~~l~~dvdl~~LA~~T~G-~SGADL~~l~~e 56 (86)
T 2krk_A 17 LDILKIHSRKMNLTRGINLRKIAELMPG-ASGAEVKGVCTE 56 (86)
T ss_dssp HHHHHHHTTTSEECTTCCCHHHHHTCSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcccCHHHHHHHcCC-CCHHHHHHHHHH
Confidence 4567888888775544569999999999 999998876554
No 137
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.62 E-value=1.3e+02 Score=18.09 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048152 16 NKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 16 ~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~ 59 (104)
.+++ .+|...+.+.+-.=..||..+ | .|...|.+|-..|.+
T Consensus 17 ~~IL-~~L~~~~~~~~~t~~eLA~~L-g-vs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 17 QRIL-KFLEELGEGKATTAHDLSGKL-G-TPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHH-HHHHHHCSSSCEEHHHHHHHH-C-CCHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHcCCCCCcCHHHHHHHH-C-cCHHHHHHHHHHHHH
Confidence 4444 677777765666668999999 4 899999999888854
No 138
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=23.60 E-value=1.1e+02 Score=17.42 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
-...|.++...||.++...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 52 (66)
T 1bw5_A 7 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT-G-LSPRVIRVWFQ 52 (66)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-T-SCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-C-cCHHHHHHHhH
Confidence 3468999999999999986644555557899998 4 88888875543
No 139
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.28 E-value=1.2e+02 Score=17.58 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||..+...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 12 ~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 56 (70)
T 2e1o_A 12 VRFSNDQTIELEKKFETQKYLSPPERKRLAKML-Q-LSERQVKTWFQ 56 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-T-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-C-CCHHHhhHhhH
Confidence 468999999999999876544555557899999 4 88888875554
No 140
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.15 E-value=68 Score=21.54 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 34 WEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 34 WekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
|+.-.+ +.| .|.+|.++.|-.|++.+..
T Consensus 70 w~AW~~-l~g-ms~eeAm~~YI~lv~~l~~ 97 (116)
T 2cqu_A 70 WDAWNA-LGS-LPKEAARQNYVDLVSSLSP 97 (116)
T ss_dssp HHHHHH-HCS-CCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHH-hcC-CCHHHHHHHHHHHHHHHcc
Confidence 444333 467 9999999999999998874
No 141
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=23.05 E-value=1.1e+02 Score=17.40 Aligned_cols=45 Identities=11% Similarity=0.080 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++..-+--+...=+.||..+ | -|..+|.-=|+
T Consensus 6 t~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 50 (67)
T 2k40_A 6 TAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL-N-LELDRIQIWFQ 50 (67)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-T-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-C-cCHHHhhHhhH
Confidence 458999999999999876544555568899999 5 88888876554
No 142
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=22.92 E-value=69 Score=21.09 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=22.4
Q ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152 33 RWEVVAAMVGGTKSAEDVQKHYVILLEDLQF 63 (104)
Q Consensus 33 RWekIA~~vpg~KS~~eV~~ryk~L~~dV~~ 63 (104)
.|+.-.+ +.| .|.+|.++.|-.|++.+..
T Consensus 65 Kw~AW~~-l~g-ms~eeA~~~YI~~v~~l~~ 93 (106)
T 2wh5_A 65 KWDAWNS-LGK-MSREEAMSAYITEMKLVAQ 93 (106)
T ss_dssp HHHHHHT-TTT-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcC-CCHHHHHHHHHHHHHHHHH
Confidence 4555443 567 9999999999999987753
No 143
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=22.81 E-value=75 Score=21.53 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=18.8
Q ss_pred HcCCCCCHHHHHHHHHHHHHhhh
Q 048152 40 MVGGTKSAEDVQKHYVILLEDLQ 62 (104)
Q Consensus 40 ~vpg~KS~~eV~~ryk~L~~dV~ 62 (104)
.+.| .|.++.++.|-.+++.+.
T Consensus 87 ~l~g-mS~eeAm~~YI~~v~~l~ 108 (119)
T 3flv_A 87 SLGD-MTKEEAMIAYVEEMKKII 108 (119)
T ss_dssp HTTT-CCHHHHHHHHHHHHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHH
Confidence 3567 999999999999988764
No 144
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.81 E-value=1.3e+02 Score=17.80 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||..+...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 56 (80)
T 2dmq_A 12 TSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-G-LTKRVLQVWFQ 56 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-C-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-C-CCHHHhhHccH
Confidence 458999999999999886654555568899999 5 88888875443
No 145
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=22.38 E-value=1.2e+02 Score=17.41 Aligned_cols=45 Identities=2% Similarity=0.045 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++..-+--+...=+.||..+ | -|..+|.-=|+
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~-l~~~qV~~WFq 56 (70)
T 2da2_A 12 TRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL-N-LPTRVIVVWFQ 56 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS-C-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-C-CCHHHhHHhhH
Confidence 458999999999999886644555567899999 5 88888876554
No 146
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.22 E-value=89 Score=20.63 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=26.6
Q ss_pred chHHHHHHHcCCCCC---HHHHHHHHHHHHHhhhhhcCC
Q 048152 32 HRWEVVAAMVGGTKS---AEDVQKHYVILLEDLQFIESG 67 (104)
Q Consensus 32 dRWekIA~~vpg~KS---~~eV~~ryk~L~~dV~~IEsG 67 (104)
..|..||..++-..+ ...++.+|...+.......+|
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~ 102 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSG 102 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 589999999965221 468999999888777665554
No 147
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.18 E-value=1.5e+02 Score=18.33 Aligned_cols=48 Identities=4% Similarity=0.010 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
+.....|.++...||.++...+--++..=+.||..+ | -|..+|+.=|+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-g-Lte~qIkvWFq 52 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-G-LPRPEIIQWFG 52 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-C-CCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-C-cCHHHhhHHhH
Confidence 334568999999999999986654666667899999 5 99999985444
No 148
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=21.62 E-value=1.2e+02 Score=16.93 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++...+--+...=+.||..+ | -|..+|.-=|.
T Consensus 10 t~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~-~-l~~~qV~~WFq 54 (61)
T 1akh_A 10 SSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC-G-ITPLQVRVWFI 54 (61)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-T-SCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH-C-cCHHHHHHHHH
Confidence 458999999999999986654555557899999 4 88888875543
No 149
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=21.08 E-value=1.3e+02 Score=17.30 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
...|.++...||.++...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 7 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 51 (68)
T 1zq3_P 7 TTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL-A-LGTAQVKIWFK 51 (68)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-T-SCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-C-cCHHHhhHhhH
Confidence 468999999999999876544555568899999 4 88888875443
No 150
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=20.43 E-value=90 Score=21.95 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048152 15 ENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLE 59 (104)
Q Consensus 15 E~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~ 59 (104)
=...|++||...+++.+.-|-..+...-.....++++..|+..+.
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 346777777754445566676666544222346666666666543
No 151
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=20.35 E-value=1.3e+02 Score=17.19 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152 8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV 55 (104)
Q Consensus 8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk 55 (104)
-...|.++...||.++...+--+...=+.||..+ | -|..+|.-=|+
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~-l~~~qV~~WFq 52 (68)
T 1yz8_P 7 RTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT-N-LTEARVRVWFK 52 (68)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT-T-SCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-C-cCHHHHHHHHH
Confidence 3468999999999999875544444457899999 4 88888875554
Done!