BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048153
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 19/255 (7%)
Query: 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXXHGLI 62
+ LS NRL G IP + L L+ L L++N+ G +P +G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 63 PPCF--DNTTLHESYSNGSSLKPFETSFLVK------NIYIYREKKILEIFEFTTKN--- 111
P + + ++ G + + K N+ ++ + ++ +T+N
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 112 -IAYTYQGRVVSYLSG------LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS 164
+ Y G LD+S N L +I +IG++ + LNL HND+ G+IP
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESS 224
+L+ + LDLS N+L+G+IP + L L +++NNLSG IPE QF TF +
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAK 733
Query: 225 YEGNHFLCGLPLPIC 239
+ N LCG PLP C
Sbjct: 734 FLNNPGLCGYPLPRC 748
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
S L L LS N L I +G+L++++ L L N L G IP +K +E+L L +N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP--LPIC 239
L G+IP L L S+++N L+G+IP+W + + N F +P L C
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 240 RS 241
RS
Sbjct: 538 RS 539
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 33/267 (12%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VXXXXXXXXXXXXXXXXXXHG 60
+L++S N+ G IP L L L +L LA N G++P +G
Sbjct: 251 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 61 LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEI-FEFTTKNIAYTYQGR 119
+PP F + +L ES + S F + + R K+L++ F + + +
Sbjct: 309 AVPPFFGSCSLLESLA--LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 120 VVSYLSGLDLSCNKL-------ICH-------------------ISPQIGNLTRIQTLNL 153
S L+ LDLS N +C I P + N + + +L+L
Sbjct: 367 SASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
S N L GTIPS+ +L + L L N L G+IP +L+ + TL + N+L+G+IP
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 214 TAQFATFSESSYEGNHFLCGLPLPICR 240
+ + S N +P I R
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGR 512
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 39/217 (17%)
Query: 2 ILDLSYNRLNGSIPDLVDGLS-QLSHLILAHNNLEGKV--PVXXXXXXXXXXXXXXXXXX 58
+LDLS+N +G +P+ + LS L L L+ NN G + +
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 59 HGLIPP----CFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
G IPP C + +LH S++ S P L K
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK----------------------- 443
Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
L L L N L I ++ + ++TL L NDL G IPS SN ++
Sbjct: 444 ---------LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
+ LS N+L G+IP + L LA+ +++N+ SG IP
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
S L LD+S NKL S I T ++ LN+S N +G IP LK ++ L L+ N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280
Query: 182 LNGKIPLQLV-ELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236
G+IP L +TL ++ N+ G +P + + + N+F LP+
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 43/266 (16%)
Query: 2 ILDLSYNRLNGS---IPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXX 58
+LDLS N ++G+ L DG +L HL ++ N + G V V
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 214
Query: 59 HGLIPPCFDNTTLHESYSNGSSL-----KPFETSFLVKNIYIYREKKILEIFEFTTKNIA 113
IP D + L +G+ L + T +K + I + + I K++
Sbjct: 215 G--IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272
Query: 114 Y------TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS 167
Y + G + +LSG +C+ L L+LS N G +P F
Sbjct: 273 YLSLAENKFTGEIPDFLSG---ACDTLT--------------GLDLSGNHFYGAVPPFFG 315
Query: 168 NLKHIESLDLSYNQLNGKIPLQ-LVELNTLAVFSVAHNNLSGKIPE----WTAQFATFSE 222
+ +ESL LS N +G++P+ L+++ L V ++ N SG++PE +A T
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 223 SSYEGNHFLCGLPLP-ICRSPVTMLK 247
SS N+F G LP +C++P L+
Sbjct: 376 SS---NNF-SGPILPNLCQNPKNTLQ 397
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP 39
ILDLS N+L+G IP + L+ L+ + L++NNL G +P
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP 39
IL+L +N ++GSIPD V L L+ L L+ N L+G++P
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP 39
M LD+SYN L+G IP + + L L L HN++ G +P
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 19/255 (7%)
Query: 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXXHGLI 62
+ LS NRL G IP + L L+ L L++N+ G +P +G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 63 PPCF--DNTTLHESYSNGSSLKPFETSFLVK------NIYIYREKKILEIFEFTTKN--- 111
P + + ++ G + + K N+ ++ + ++ +T+N
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 112 -IAYTYQGRVVSYLSG------LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS 164
+ Y G LD+S N L +I +IG++ + LNL HND+ G+IP
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESS 224
+L+ + LDLS N+L+G+IP + L L +++NNLSG IPE QF TF +
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAK 730
Query: 225 YEGNHFLCGLPLPIC 239
+ N LCG PLP C
Sbjct: 731 FLNNPGLCGYPLPRC 745
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
S L L LS N L I +G+L++++ L L N L G IP +K +E+L L +N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP--LPIC 239
L G+IP L L S+++N L+G+IP+W + + N F +P L C
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 240 RS 241
RS
Sbjct: 535 RS 536
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 33/267 (12%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VXXXXXXXXXXXXXXXXXXHG 60
+L++S N+ G IP L L L +L LA N G++P +G
Sbjct: 248 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 61 LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEI-FEFTTKNIAYTYQGR 119
+PP F + +L ES + S F + + R K+L++ F + + +
Sbjct: 306 AVPPFFGSCSLLESLA--LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 120 VVSYLSGLDLSCNKL-------ICH-------------------ISPQIGNLTRIQTLNL 153
S L+ LDLS N +C I P + N + + +L+L
Sbjct: 364 SASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
S N L GTIPS+ +L + L L N L G+IP +L+ + TL + N+L+G+IP
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 214 TAQFATFSESSYEGNHFLCGLPLPICR 240
+ + S N +P I R
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGR 509
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 39/217 (17%)
Query: 2 ILDLSYNRLNGSIPDLVDGLS-QLSHLILAHNNLEGKV--PVXXXXXXXXXXXXXXXXXX 58
+LDLS+N +G +P+ + LS L L L+ NN G + +
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 59 HGLIPP----CFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
G IPP C + +LH S++ S P L K
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK----------------------- 440
Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
L L L N L I ++ + ++TL L NDL G IPS SN ++
Sbjct: 441 ---------LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
+ LS N+L G+IP + L LA+ +++N+ SG IP
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 25/232 (10%)
Query: 2 ILDLSYNRLNGS---IPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXX 58
+LDLS N ++G+ L DG +L HL ++ N + G V V
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 211
Query: 59 HGLIPPCFDNTTLHESYSNGSSL-----KPFETSFLVKNIYIYREKKILEIFEFTTKNIA 113
IP D + L +G+ L + T +K + I + + I K++
Sbjct: 212 G--IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 269
Query: 114 Y------TYQGRVVSYLSG-------LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160
Y + G + +LSG LDLS N + P G+ + +++L LS N+ G
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 161 TIP-STFSNLKHIESLDLSYNQLNGKIPLQLVELN-TLAVFSVAHNNLSGKI 210
+P T ++ ++ LDLS+N+ +G++P L L+ +L ++ NN SG I
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
S L LD+S NKL S I T ++ LN+S N +G IP LK ++ L L+ N+
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 277
Query: 182 LNGKIPLQLV-ELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236
G+IP L +TL ++ N+ G +P + + + N+F LP+
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP 39
ILDLS N+L+G IP + L+ L+ + L++NNL G +P
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP 39
IL+L +N ++GSIPD V L L+ L L+ N L+G++P
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP 39
M LD+SYN L+G IP + + L L L HN++ G +P
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
Y+ G+ N L+ I P I LT++ L ++H ++ G IP S +K + +LD SYN L
Sbjct: 82 YIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFAT-FSESSYEGNHFLCGLP 235
+G +P + L L + N +SG IP+ F+ F+ + N +P
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 48/253 (18%)
Query: 8 NRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXXHGLIPPCFD 67
N L G IP + L+QL +L + H N+ G +P G +PP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 68 N------TTLHESYSNGSSLKPFET-SFLVKNIYIYREKKILEIFE-FTTKNIAYTYQGR 119
+ T + +G+ + + S L ++ I R + +I F N+A+ R
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 120 VV-----SYLSGLDLSCNKLICHISP--------QIGNLTRIQTLNLSHNDLIGTIPSTF 166
+ S L G D + K+ H++ ++G + L+L +N + GT+P
Sbjct: 207 NMLEGDASVLFGSDKNTQKI--HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 167 SNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE 226
+ LK + SL++S+N L G+IP F S+Y
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIP-------------------------QGGNLQRFDVSAYA 299
Query: 227 GNHFLCGLPLPIC 239
N LCG PLP C
Sbjct: 300 NNKCLCGSPLPAC 312
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 146 TRIQTLNLSHNDLIG-------TIPSTFSNLKHIESLDLS-YNQLNGKIPLQLVELNTLA 197
T QT +++ DL G IPS+ +NL ++ L + N L G IP + +L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 198 VFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSP 242
+ H N+SG IP++ +Q T + N LP I P
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 124 LSGLDLSCNKLICH--ISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
L LDLS N + S Q+ NL+ +QTLNLSHN+ +G F +E LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 182 LNGKIPLQLVE-LNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233
L+ P + L+ L V ++ + L A + +GNHF G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 141 QIGNLTRIQTLNLSHNDLIGTIPSTFS--NLKHIESLDLSYNQLNGKIPLQLVELNTLAV 198
++GNL QTL+LSHND+ + + NL H+++L+LS+N+ G E L +
Sbjct: 345 KLGNL---QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 199 FSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPIC 239
+A L P +S ++ HFL L L C
Sbjct: 402 LDLAFTRLHINAP----------QSPFQNLHFLQVLNLTYC 432
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL---NGKIPLQLVELNTLA 197
Q+ NL+ +Q+LNLS+N+ + F +E LDL++ +L + + P Q L+ L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ--NLHLLK 428
Query: 198 VFSVAHNNLSGKIPEWTAQFATFSESSYEGNHF 230
V +++H+ L + + +GNHF
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN 204
L R+Q LN+SHN+L+ S ++ L + +LD S+N++ + +LA F++ +N
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550
Query: 205 NLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTM 245
+++ + F + E FL + C +PV M
Sbjct: 551 SVAC-----ICEHQKFLQWVKEQKQFLVNVEQMTCATPVEM 586
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 142 IGNLTRIQTLNLSHNDLIG-TIPSTFSNLKHIESLDLSYN 180
IG L ++ LN++HN + +P+ FSNL ++ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN 204
L R+Q LN+SHN+L+ S ++ L + +LD S+N++ + +LA F++ +N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 205 NLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTM 245
+++ + F + E FL + C +PV M
Sbjct: 556 SVAC-----ICEHQKFLQWVKEQKQFLVNVEQMTCATPVEM 591
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 142 IGNLTRIQTLNLSHNDLIG-TIPSTFSNLKHIESLDLSYN 180
IG L ++ LN++HN + +P+ FSNL ++ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 114 YTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
+T++G S + DLS +K+ + + T ++ L L+ N++ + F L H+
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 174 SLDLSYNQLNGKIPLQLVE-LNTLAVFSVAHNNLSG 208
L+LS N L G I ++ E L+ L V +++N++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
+++L L+LS N L S NL +++ L+LS+N + +F L +++ L L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 181 QL 182
QL
Sbjct: 382 QL 383
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQ-LVELNTLAVF 199
Q+ NL +Q LNLS+N+ +G F +E LD+++ L+ K P L+ L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 200 SVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233
+++H L A + +GN F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN 205
T I LNL+HN L + F+ + SLD+ +N ++ P +L L V ++ HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 206 LSGKIPEWTAQFAT 219
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLK--HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203
T I+ L+LS++ L T +TF LK ++ LDLSYN LN L L F + +
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 204 NNL 206
NN+
Sbjct: 292 NNI 294
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE 35
+LDLSYN LN D L QL + L +NN++
Sbjct: 262 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 295
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
S L+ LD+ N I + P++ L ++ LNL HN+L TF+ ++ L L N
Sbjct: 59 SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 117
Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSG 208
+ V+ L ++HN LS
Sbjct: 118 SIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN 205
T I LNL+HN L + F+ + SLD+ +N ++ P +L L V ++ HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 206 LSGKIPEWTAQFAT 219
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLK--HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203
T I+ L+LS++ L T +TF LK ++ LDLSYN LN L L F + +
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 204 NNL 206
NN+
Sbjct: 282 NNI 284
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE 35
+LDLSYN LN D L QL + L +NN++
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
S L+ LD+ N I + P++ L ++ LNL HN+L TF+ ++ L L N
Sbjct: 49 SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSG 208
+ V+ L ++HN LS
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN 205
T I LNL+HN L + F+ + SLD+ +N ++ P +L L V ++ HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 206 LSGKIPEWTAQFAT 219
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLK--HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203
T I+ L+LS++ L T +TF LK ++ LDLSYN LN L L F + +
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 204 NNL 206
NN+
Sbjct: 287 NNI 289
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE 35
+LDLSYN LN D L QL + L +NN++
Sbjct: 257 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
S L+ LD+ N I + P++ L ++ LNL HN+L TF+ ++ L L N
Sbjct: 54 SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 112
Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSG 208
+ V+ L ++HN LS
Sbjct: 113 SIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIA-YTYQG-RVVSYLS--------G 126
+G+SLK +V +++ + + I EIF + NI +T G R+V L
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIF--SNMNIKNFTVSGTRMVHMLCPSKISPFLH 328
Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESLDLSYNQLN 183
LD S N L + G+LT ++TL L N L + I + +K ++ LD+S N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 114 YTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
+T++G S + DLS +K+ + + T ++ L L+ N++ + F L H++
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLK 326
Query: 174 SLDLSYNQL 182
L L NQL
Sbjct: 327 ELALDTNQL 335
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQLNG 184
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQL 182
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 121 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQL 182
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 122 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQL 182
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 121 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQL 182
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 144 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 145 LTRIQTLNLSHNDLIGT-IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203
L+ ++ L ++ N +P F+ L+++ LDLS QL P L++L V +++H
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 204 NNL 206
NN
Sbjct: 528 NNF 530
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 124 LSGLDLSCNKLICHISPQIGN-LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
L+ LDLS +L +SP N L+ +Q LN+SHN+ + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Query: 183 NGKIPLQLVEL-NTLAVFSVAHNNLS 207
+L ++LA ++ N+ +
Sbjct: 555 MTSKKQELQHFPSSLAFLNLTQNDFA 580
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
LT + LNL+HN L F L ++ LDLSYNQL
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 3 LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLE 35
LDLSYN+L S+P+ V D L+QL L L N L+
Sbjct: 162 LDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQL 182
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 122 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQL 182
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 145 LTRIQTLNLSHNDLIGT-IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203
L+ ++ L ++ N +P F+ L+++ LDLS QL P L++L V +++H
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 204 NNL 206
NN
Sbjct: 504 NNF 506
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 124 LSGLDLSCNKLICHISPQIGN-LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
L+ LDLS +L +SP N L+ +Q LN+SHN+ + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 183 NGKIPLQLVEL-NTLAVFSVAHNNLS 207
+L ++LA ++ N+ +
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
+S L+ LD+S NK++ + +L +++L + NDL+ FS L +E L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSG 208
L L L+ L V + H N++
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINA 190
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
R + YL L+LS N + + L R+Q + L L P F L ++ L++S
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304
Query: 179 YNQL 182
NQL
Sbjct: 305 GNQL 308
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 142 IGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQL 182
IG+L ++ LN++HN LI + +P FSNL ++E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN 205
+ IQ L L N + F L +++L+L NQ++ +P LN+L ++A N
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137
Query: 206 LSGKIP-EWTAQFATFSESSYEGNHFLCGLP-----LPICRSPVTMLKASTTNKE 254
+ W A++ + S G CG P + I P + K S+ N E
Sbjct: 138 FNCNCHLAWFAEW--LRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE 190
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN 205
+ I LNL+HN L P+ F+ + LD +N ++ P L L V ++ HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 206 LSGKIPEWTAQFAT 219
LS +I + T F T
Sbjct: 85 LS-QISDQTFVFCT 97
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNL 34
ILDLS N + DL++GL L L HNNL
Sbjct: 484 ILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 145 LTRIQTLNLSHNDLIGT-IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203
L+ ++ L ++ N +P F+ L+++ LDLS QL P L++L V +++H
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 204 NNL 206
NN
Sbjct: 209 NNF 211
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
+L+ +DLS N++ + N+T++ TL LS+N L P TF LK + L L N +
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Query: 183 NGKIPLQLVELNTLAVFSVAHNNL 206
+ +L+ L+ ++ N L
Sbjct: 115 SVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 138 ISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLA 197
+ ++ N + ++LS+N + +FSN+ + +L LSYN+L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 198 VFSVAHNNLSGKIPE 212
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 147 RIQTLNLSHNDLIGTIP--STFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN 204
+IQ + + +N+L T P ++ K + L+ YNQL GK+P E+ LA ++A+N
Sbjct: 306 KIQIIYIGYNNL-KTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASLNLAYN 363
Query: 205 NLSGKIPEWTAQFATFSE 222
+I E A F F+E
Sbjct: 364 ----QITEIPANFCGFTE 377
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN--- 183
LDL NK+ NL + TL L +N + P F+ L +E L LS NQL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 184 GKIPLQLVEL 193
K+P L EL
Sbjct: 117 EKMPKTLQEL 126
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN--- 183
LDL NK+ NL + TL L +N + P F+ L +E L LS NQL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 184 GKIPLQLVEL 193
K+P L EL
Sbjct: 117 EKMPKTLQEL 126
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 120 VVSYLSGLD--LSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESL 175
V++ L+ L+ ++ N I I+P +G LT + L+L+ N L IGT+ S L ++ L
Sbjct: 189 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDL 243
Query: 176 DLSYNQLNGKIPL 188
DL+ NQ++ PL
Sbjct: 244 DLANNQISNLAPL 256
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 120 VVSYLSGLD--LSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESL 175
V++ L+ L+ ++ N I I+P +G LT + L+L+ N L IGT+ S L ++ L
Sbjct: 189 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDL 243
Query: 176 DLSYNQLNGKIPL 188
DL+ NQ++ PL
Sbjct: 244 DLANNQISNLAPL 256
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 120 VVSYLSGLD--LSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESL 175
V++ L+ L+ ++ N I I+P +G LT + L+L+ N L IGT+ S L ++ L
Sbjct: 190 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDL 244
Query: 176 DLSYNQLNGKIPL 188
DL+ NQ++ PL
Sbjct: 245 DLANNQISNLAPL 257
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 120 VVSYLSGLD--LSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESL 175
V++ L+ L+ ++ N I I+P +G LT + L+L+ N L IGT+ S L ++ L
Sbjct: 193 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDL 247
Query: 176 DLSYNQLNGKIPL 188
DL+ NQ++ PL
Sbjct: 248 DLANNQISNLAPL 260
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 120 VVSYLSGLD--LSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESL 175
V++ L+ L+ ++ N I I+P +G LT + L+L+ N L IGT+ S L ++ L
Sbjct: 190 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDL 244
Query: 176 DLSYNQLNGKIPL 188
DL+ NQ++ PL
Sbjct: 245 DLANNQISNLAPL 257
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 120 VVSYLSGLD--LSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESL 175
V++ L+ L+ ++ N I I+P +G LT + L+L+ N L IGT+ S L ++ L
Sbjct: 190 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDL 244
Query: 176 DLSYNQLNGKIPL 188
DL+ NQ++ PL
Sbjct: 245 DLANNQISNLAPL 257
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 120 VVSYLSGLD--LSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKHIESL 175
V++ L+ L+ ++ N I I+P +G LT + L+L+ N L IGT+ S L ++ L
Sbjct: 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDL 248
Query: 176 DLSYNQLNGKIPL 188
DL+ NQ++ PL
Sbjct: 249 DLANNQISNLAPL 261
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
+ LDLS N++ + + +Q L L+ N + +FS+L +E LDLSYN L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
+ LDLS N++ + + +Q L L+ N + +FS+L +E LDLSYN L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
LDL NKL S LT+++ L L+ N L F LK++E+L ++ N+L +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 187 PLQLV-ELNTLAVFSVAHNNLSGKIPE 212
P+ + +L LA + N L P
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPR 127
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 95 IYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTL 151
I++E K LE T + G + L+ L L N+L + P++ +LT++ L
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138
Query: 152 NLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL----QLVELNTLAVFSVAHNNLS 207
+L +N+L F L ++ L L NQL ++P +L EL TL + NN
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL----DNNQL 193
Query: 208 GKIPE 212
++PE
Sbjct: 194 KRVPE 198
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
T+ G S + LDLS + S L ++ LNL++N + F L +++
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 175 LDLSYNQL 182
L+LSYN L
Sbjct: 319 LNLSYNLL 326
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL----NGKIPLQLVELNTLAVFS 200
L+ +Q L L+HN L P FS+L + L L+ N+L + +P L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILD 532
Query: 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
++ N L P+ F + S N F+C
Sbjct: 533 ISRNQLLAPNPD---VFVSLSVLDITHNKFIC 561
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 22/62 (35%)
Query: 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC 136
+G + PF L KN I + EF K +A + Y K +C
Sbjct: 109 SGQRISPFPMELLEKNSNIKASTDLGRCAEFAFKTVAMDKNNKATKYRYPFVYDSKKRLC 168
Query: 137 HI 138
HI
Sbjct: 169 HI 170
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
L L+LS N+L LT ++ L L H + + F +LK +E L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
Length = 432
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 22/62 (35%)
Query: 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC 136
+G + PF L KN I + EF K +A + Y K +C
Sbjct: 109 SGQRISPFPMELLEKNSNIKASTDLGRCAEFAFKTVAMDKNNKATKYRYPFVYDSKKRLC 168
Query: 137 HI 138
HI
Sbjct: 169 HI 170
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
G+ + L+ LD+S N+L + L +Q L L N+L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 178 SYNQLNGKIPLQLVE-LNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
+ NQL ++P L+ L L + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
L L+LS N+L LT ++ L L H + + F +LK +E L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
G+ + L+ LD+S N+L + L +Q L L N+L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 178 SYNQLNGKIPLQLVE-LNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
+ NQL ++P L+ L L + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
G+ + L+ LD+S N+L + L +Q L L N+L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 178 SYNQLNGKIPLQLVE-LNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
+ NQL ++P L+ L L + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
G+ + L+ LD+S N+L + L +Q L L N+L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 178 SYNQLNGKIPLQLVE-LNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
+ NQL ++P L+ L L + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 22/62 (35%)
Query: 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC 136
+G + PF L KN I + EF K +A + Y K +C
Sbjct: 104 SGQRISPFPMELLEKNSNIKASTDLGRCAEFAFKTVAMDKNNKATKYRYPFVYDSKKRLC 163
Query: 137 HI 138
HI
Sbjct: 164 HI 165
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC 136
+ L + FL++N + E + + K++ + ++ LDLS N+L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA 477
Query: 137 HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQ-LVELNT 195
+ P + L ++ L S N L +NL ++ L L N+L +Q LV
Sbjct: 478 -LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534
Query: 196 LAVFSVAHNNL 206
L + ++ N+L
Sbjct: 535 LVLLNLQGNSL 545
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 112 IAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171
+A G+ + L LDLS N L+ H+ R++ L L HN ++ ST LK
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK- 342
Query: 172 IESLDLSYNQLN 183
+L LS+N +
Sbjct: 343 --NLTLSHNDWD 352
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC 136
+ L + FL++N + E + + K++ + ++ LDLS N+L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA 477
Query: 137 HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQ-LVELNT 195
+ P + L ++ L S N L +NL ++ L L N+L +Q LV
Sbjct: 478 -LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534
Query: 196 LAVFSVAHNNL 206
L + ++ N+L
Sbjct: 535 LVLLNLQGNSL 545
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 120 VVSYLSGLD---LSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
V +L+ LD L N+L S LT+++ L L+ N L F L ++++L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 177 LSYNQLNGKIP----LQLVELNTLAVFS 200
LS NQL +P +L +L T+ +F
Sbjct: 162 LSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
LDL L LT++ LNL +N L F +L + +L L+ NQL +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 187 PLQLVE 192
PL + +
Sbjct: 99 PLGVFD 104
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 120 VVSYLSGLD---LSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
V +L+ LD L N+L S LT+++ L L+ N L F L ++++L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 177 LSYNQLNGKIP----LQLVELNTLAVFS 200
LS NQL +P +L +L T+ +F
Sbjct: 162 LSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
LDL L LT++ LNL +N L F +L + +L L+ NQL +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 187 PLQLVE 192
PL + +
Sbjct: 99 PLGVFD 104
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 112 IAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171
+A G+ + L LDLS N L+ H+ R++ L L HN ++ ST LK
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK- 348
Query: 172 IESLDLSYN 180
+L LS+N
Sbjct: 349 --NLTLSHN 355
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 122 SYLSGLDLSCN---KLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
SY + LDLS N +L +P LT + +L LSHN L F + ++ LDLS
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNL 206
N L+ +L L V + +N++
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHI 124
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 126 GLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK 185
LDLS N I +IS I + L L+ N L +P+ NL ++ LDLS+N+L
Sbjct: 228 ALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 186 IPLQLVELNTLAVF 199
+P +L L F
Sbjct: 285 LPAELGSCFQLKYF 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,937,069
Number of Sequences: 62578
Number of extensions: 256222
Number of successful extensions: 938
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 342
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)