Query 048153
Match_columns 257
No_of_seqs 139 out of 2142
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 06:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.6E-25 5.6E-30 206.0 14.3 243 2-251 144-390 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.4E-24 7.3E-29 198.6 15.3 253 1-253 215-487 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.2E-25 4.9E-30 184.3 1.9 256 1-257 81-381 (873)
4 KOG4194 Membrane glycoprotein 99.9 4.6E-24 9.9E-29 176.7 2.6 253 1-254 152-429 (873)
5 KOG4237 Extracellular matrix p 99.8 7.9E-22 1.7E-26 156.4 -2.2 237 2-238 71-366 (498)
6 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.3E-26 164.4 -3.2 247 2-253 107-374 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 4.1E-21 8.8E-26 152.9 -4.4 238 2-255 72-311 (565)
8 KOG0617 Ras suppressor protein 99.8 6.1E-21 1.3E-25 135.6 -3.9 173 3-233 38-214 (264)
9 KOG0444 Cytoskeletal regulator 99.8 5.7E-20 1.2E-24 154.1 -1.1 224 2-237 130-381 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 1.1E-20 2.3E-25 150.5 -9.1 238 2-255 49-289 (565)
11 KOG0618 Serine/threonine phosp 99.7 9.3E-19 2E-23 152.0 -2.1 224 1-230 244-488 (1081)
12 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.5E-23 123.3 -2.0 161 18-235 29-190 (264)
13 PLN03210 Resistant to P. syrin 99.7 3.8E-15 8.2E-20 139.8 16.1 246 1-253 637-905 (1153)
14 PRK15370 E3 ubiquitin-protein 99.6 1.3E-15 2.9E-20 135.2 10.7 118 123-253 305-427 (754)
15 PRK15387 E3 ubiquitin-protein 99.6 5.2E-15 1.1E-19 131.0 11.8 101 123-236 363-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1E-14 2.2E-19 129.2 12.7 226 2-254 205-458 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 7E-15 1.5E-19 130.6 11.2 203 2-231 203-428 (754)
18 KOG0618 Serine/threonine phosp 99.6 3.8E-17 8.2E-22 142.2 -3.0 222 2-228 268-510 (1081)
19 PLN03210 Resistant to P. syrin 99.6 3E-14 6.5E-19 133.8 14.8 236 1-254 592-859 (1153)
20 cd00116 LRR_RI Leucine-rich re 99.5 6.4E-16 1.4E-20 126.3 -0.7 249 1-252 26-318 (319)
21 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-15 2.6E-20 124.7 0.7 249 2-254 2-291 (319)
22 KOG4237 Extracellular matrix p 99.5 8.2E-16 1.8E-20 122.6 -4.1 207 1-207 94-359 (498)
23 PLN03150 hypothetical protein; 99.5 1.6E-13 3.4E-18 121.1 9.2 119 123-241 419-539 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2E-14 4.2E-19 119.7 -4.0 176 2-215 79-254 (722)
25 PF14580 LRR_9: Leucine-rich r 99.3 1.5E-12 3.2E-17 95.7 4.8 125 121-250 18-149 (175)
26 COG4886 Leucine-rich repeat (L 99.2 8.5E-12 1.8E-16 105.0 4.8 107 121-232 185-291 (394)
27 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.4E-17 109.5 -1.0 166 3-205 103-271 (722)
28 KOG1909 Ran GTPase-activating 99.2 9.5E-13 2.1E-17 103.7 -1.6 229 2-230 34-310 (382)
29 PLN03150 hypothetical protein; 99.2 4.1E-11 8.9E-16 105.9 7.6 105 148-252 420-526 (623)
30 PF13855 LRR_8: Leucine rich r 99.2 4.1E-11 8.8E-16 72.9 4.1 59 147-205 2-60 (61)
31 PF14580 LRR_9: Leucine-rich r 99.2 8.2E-11 1.8E-15 86.6 6.4 121 103-226 22-148 (175)
32 COG4886 Leucine-rich repeat (L 99.2 4.5E-11 9.7E-16 100.7 5.6 129 121-254 162-290 (394)
33 PF13855 LRR_8: Leucine rich r 99.1 7.4E-11 1.6E-15 71.8 4.3 61 122-182 1-61 (61)
34 KOG1859 Leucine-rich repeat pr 99.1 1.1E-12 2.4E-17 112.4 -5.5 187 39-232 102-293 (1096)
35 KOG1259 Nischarin, modulator o 99.1 3.5E-11 7.6E-16 93.6 1.2 134 96-234 280-415 (490)
36 KOG1259 Nischarin, modulator o 99.0 4.5E-11 9.7E-16 93.0 -1.2 87 121-210 328-415 (490)
37 KOG3207 Beta-tubulin folding c 98.9 1.3E-10 2.8E-15 94.4 -0.4 112 121-232 221-340 (505)
38 KOG3207 Beta-tubulin folding c 98.9 3.2E-10 6.9E-15 92.2 0.9 43 17-59 141-185 (505)
39 KOG4579 Leucine-rich repeat (L 98.7 1.7E-09 3.8E-14 74.7 -1.7 114 121-237 52-165 (177)
40 KOG0531 Protein phosphatase 1, 98.6 3E-09 6.5E-14 90.1 -1.7 211 4-231 78-290 (414)
41 KOG1909 Ran GTPase-activating 98.6 4.8E-09 1E-13 83.1 -1.2 188 17-207 87-311 (382)
42 KOG4658 Apoptotic ATPase [Sign 98.6 4.5E-08 9.6E-13 89.2 3.6 65 1-66 574-638 (889)
43 KOG0531 Protein phosphatase 1, 98.5 8.4E-09 1.8E-13 87.4 -1.2 222 1-238 98-325 (414)
44 KOG4579 Leucine-rich repeat (L 98.4 1.1E-08 2.4E-13 70.7 -2.9 106 122-230 27-135 (177)
45 KOG1859 Leucine-rich repeat pr 98.4 8E-09 1.7E-13 89.3 -5.0 128 121-255 163-293 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 2.6E-08 5.7E-13 77.7 -4.5 102 119-222 283-391 (419)
47 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3E-11 48.7 3.0 36 171-207 2-37 (44)
48 PF12799 LRR_4: Leucine Rich r 98.1 1.8E-06 3.9E-11 48.3 2.4 38 22-60 1-38 (44)
49 KOG1644 U2-associated snRNP A' 98.1 4.2E-06 9.1E-11 61.9 4.6 104 122-227 42-149 (233)
50 KOG1644 U2-associated snRNP A' 98.1 7E-06 1.5E-10 60.8 5.1 103 145-249 41-148 (233)
51 KOG2120 SCF ubiquitin ligase, 98.0 7.3E-08 1.6E-12 75.2 -7.3 128 122-251 234-373 (419)
52 KOG4658 Apoptotic ATPase [Sign 97.9 6.2E-06 1.3E-10 75.6 3.5 104 123-227 546-651 (889)
53 COG5238 RNA1 Ran GTPase-activa 97.9 3.3E-06 7.1E-11 65.4 0.8 207 2-208 34-286 (388)
54 KOG2982 Uncharacterized conser 97.9 5.9E-06 1.3E-10 64.8 1.7 38 22-59 71-110 (418)
55 PF13306 LRR_5: Leucine rich r 97.8 0.00012 2.5E-09 51.4 7.7 45 15-61 5-49 (129)
56 PRK15386 type III secretion pr 97.8 0.00015 3.3E-09 60.4 8.7 34 19-56 49-82 (426)
57 KOG2982 Uncharacterized conser 97.8 9.5E-06 2.1E-10 63.7 1.4 195 2-202 75-287 (418)
58 COG5238 RNA1 Ran GTPase-activa 97.7 1E-05 2.2E-10 62.8 -0.0 188 17-207 87-316 (388)
59 PF13306 LRR_5: Leucine rich r 97.5 0.00068 1.5E-08 47.5 7.7 60 140-202 52-111 (129)
60 PRK15386 type III secretion pr 97.4 0.00071 1.5E-08 56.5 7.8 53 100-156 52-104 (426)
61 KOG2739 Leucine-rich acidic nu 97.3 0.00021 4.5E-09 55.2 3.2 102 121-224 42-149 (260)
62 KOG2739 Leucine-rich acidic nu 97.3 0.00023 4.9E-09 55.0 3.1 61 121-183 64-129 (260)
63 KOG3665 ZYG-1-like serine/thre 97.2 0.00017 3.6E-09 64.8 1.4 111 119-232 145-264 (699)
64 KOG3665 ZYG-1-like serine/thre 97.1 0.00014 3.1E-09 65.2 0.7 129 121-253 121-262 (699)
65 KOG2123 Uncharacterized conser 97.0 2.4E-05 5.2E-10 60.9 -4.2 78 148-229 21-99 (388)
66 KOG2123 Uncharacterized conser 96.5 0.00013 2.8E-09 57.0 -4.1 81 101-183 20-101 (388)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0036 7.8E-08 29.0 0.8 12 24-35 2-13 (22)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0033 7.2E-08 29.2 0.4 12 196-207 2-13 (22)
69 KOG3864 Uncharacterized conser 95.4 0.0033 7.1E-08 46.9 -0.5 88 143-230 98-188 (221)
70 PF13504 LRR_7: Leucine rich r 94.8 0.02 4.3E-07 24.6 1.3 13 195-207 2-14 (17)
71 smart00370 LRR Leucine-rich re 93.3 0.072 1.6E-06 25.6 1.8 14 147-160 3-16 (26)
72 smart00369 LRR_TYP Leucine-ric 93.3 0.072 1.6E-06 25.6 1.8 14 147-160 3-16 (26)
73 smart00369 LRR_TYP Leucine-ric 92.9 0.083 1.8E-06 25.4 1.7 14 22-35 2-15 (26)
74 smart00370 LRR Leucine-rich re 92.9 0.083 1.8E-06 25.4 1.7 14 22-35 2-15 (26)
75 KOG1947 Leucine rich repeat pr 92.7 0.04 8.6E-07 47.6 0.5 36 170-205 243-280 (482)
76 KOG0473 Leucine-rich repeat pr 92.3 0.0032 6.9E-08 48.2 -5.8 86 143-231 39-124 (326)
77 PF13516 LRR_6: Leucine Rich r 92.0 0.035 7.6E-07 26.2 -0.4 13 171-183 3-15 (24)
78 KOG1947 Leucine rich repeat pr 92.0 0.059 1.3E-06 46.6 0.7 110 119-228 211-331 (482)
79 KOG3763 mRNA export factor TAP 90.7 0.13 2.7E-06 44.5 1.4 68 168-235 216-287 (585)
80 KOG4308 LRR-containing protein 89.1 0.0028 6.1E-08 54.6 -9.7 90 144-233 202-305 (478)
81 KOG3864 Uncharacterized conser 89.0 0.04 8.7E-07 41.3 -2.5 83 123-205 102-187 (221)
82 KOG0473 Leucine-rich repeat pr 88.2 0.0087 1.9E-07 45.9 -6.5 85 121-208 41-125 (326)
83 smart00364 LRR_BAC Leucine-ric 83.6 0.83 1.8E-05 22.0 1.3 13 171-183 3-15 (26)
84 smart00365 LRR_SD22 Leucine-ri 81.7 1.1 2.5E-05 21.6 1.4 15 46-60 2-16 (26)
85 smart00368 LRR_RI Leucine rich 76.5 1.3 2.8E-05 21.7 0.7 13 171-183 3-15 (28)
86 KOG4341 F-box protein containi 68.6 2.4 5.2E-05 35.8 1.0 109 121-229 319-437 (483)
87 KOG3763 mRNA export factor TAP 65.4 3.3 7.1E-05 36.2 1.2 80 144-224 216-307 (585)
88 TIGR00864 PCC polycystin catio 59.2 11 0.00023 39.8 3.6 32 152-183 1-32 (2740)
89 smart00367 LRR_CC Leucine-rich 57.5 7.7 0.00017 18.3 1.3 12 218-229 2-13 (26)
90 KOG4242 Predicted myosin-I-bin 47.4 24 0.00052 30.6 3.4 106 145-252 164-279 (553)
91 TIGR00864 PCC polycystin catio 47.1 10 0.00022 39.9 1.4 32 4-35 1-32 (2740)
92 KOG4341 F-box protein containi 42.7 11 0.00024 32.0 0.8 111 122-232 294-415 (483)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.6e-25 Score=206.00 Aligned_cols=243 Identities=30% Similarity=0.393 Sum_probs=123.2
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS 80 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~ 80 (257)
+|+|++|.+.+..|..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.... +..+....+.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 445555555545555555555555555555555555555555555555555555555544444333222 2233333222
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL 158 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (257)
+... ....+..+..++.+++..+.+..... ...+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 224 l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 224 LSGE-------IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred cCCc-------CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 2210 01111223334444444443321111 11244556666666655555555555556666666666665
Q ss_pred ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153 159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI 238 (257)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 238 (257)
.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++++|.+.+..|..+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 55555555555666666666666655555555556666666666666655556555556666666666666555555544
Q ss_pred cc-CcccccccccC
Q 048153 239 CR-SPVTMLKASTT 251 (257)
Q Consensus 239 ~~-~~l~~l~~~~~ 251 (257)
|. ..++.|+++.|
T Consensus 377 ~~~~~L~~L~l~~n 390 (968)
T PLN00113 377 CSSGNLFKLILFSN 390 (968)
T ss_pred hCcCCCCEEECcCC
Confidence 43 34444444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.4e-24 Score=198.64 Aligned_cols=253 Identities=27% Similarity=0.355 Sum_probs=161.2
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
+.|+|++|++.+..|..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+... .+..+....+
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 467788888877777778888888888888888777777777788888888888887776666544332 2333333333
Q ss_pred CCCCCcchhh-----------------hhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCC
Q 048153 80 SLKPFETSFL-----------------VKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISP 140 (257)
Q Consensus 80 ~l~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~ 140 (257)
.+.......+ .........+..++.+.+..+.+..... ...+++|+.|++++|.+.+..|.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 3221100000 0001112233344444444444322111 11245677777777777666666
Q ss_pred CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCC
Q 048153 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATF 220 (257)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 220 (257)
++..+++|+.+++++|.+.+..|..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+.+.+|..+..+++|
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 66666777777777777766677777777777777777777777777777777777777777777777777766677777
Q ss_pred CeeccccCcccccCCCCCccCcccccccccCCc
Q 048153 221 SESSYEGNHFLCGLPLPICRSPVTMLKASTTNK 253 (257)
Q Consensus 221 ~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (257)
+.+++++|.+.+..|.......++.|+++.|..
T Consensus 455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred cEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 777777777776666655556666677666654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.2e-25 Score=184.32 Aligned_cols=256 Identities=19% Similarity=0.181 Sum_probs=177.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecc--------------------
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG-------------------- 60 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------- 60 (257)
+.||+++|+++++.++.|.++++|+.+++..|.++ .+|..-....+++.|++.+|.++.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 36999999999988899999999999999999888 566533333345555555555543
Q ss_pred ----cCCCCCcC-CcccccccCCCCCCCCcchhhhh-----------------hhhhhhcccchhhcccccccccccccc
Q 048153 61 ----LIPPCFDN-TTLHESYSNGSSLKPFETSFLVK-----------------NIYIYREKKILEIFEFTTKNIAYTYQG 118 (257)
Q Consensus 61 ----~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~ 118 (257)
+....|.. ..+..+....+.++.+....+.. ....+..+++|+.+++..+.+......
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 33333322 33455555555554433322221 134456667777888877776655322
Q ss_pred --ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCC
Q 048153 119 --RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTL 196 (257)
Q Consensus 119 --~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 196 (257)
..+++|+.+.+..|.+.......|..+.++++|+++.|.++.....++.++++|+.|++++|+|..+.++.....++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 336777888888888876667777888888888888888887777777788888888888888877777777777888
Q ss_pred CEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCccccC
Q 048153 197 AVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNKEMII 257 (257)
Q Consensus 197 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~ 257 (257)
+.|+|+.|+++...+.++..+..|++|+++.|.+.---...+ |-.+|..||++.|...|+|
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 888888888887777777777778888888887654322233 6677777877777766654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-24 Score=176.65 Aligned_cols=253 Identities=20% Similarity=0.167 Sum_probs=154.0
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~~~ 79 (257)
|+|||+.|.|+.+...+|..-.++++|++++|+++......|..+.+|.+|.++.|+++.+++..|.. ..+..+....+
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 34566666666544455555556666666666666555555666666666666666666555555542 23444444444
Q ss_pred CCCCCcchhhhhh-----------------hhhhhcccchhhccccccccccc--cccccccccceEEcccCccccccCC
Q 048153 80 SLKPFETSFLVKN-----------------IYIYREKKILEIFEFTTKNIAYT--YQGRVVSYLSGLDLSCNKLICHISP 140 (257)
Q Consensus 80 ~l~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~L~~L~ls~n~~~~~~~~ 140 (257)
.+....+..+... ...+-...+++.++++.+.+... .....++.|++|++|+|.+..+.++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 4433322221100 00111222444455554443322 2223366777788888887777777
Q ss_pred CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC---Chhhhhc
Q 048153 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI---PEWTAQF 217 (257)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~~ 217 (257)
.+..+++|+.|+++.|.++...+.+|..+..|++|++++|++....-..|..+.+|+.|||++|.+...+ ...+..+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 7777778888888888887777777777778888888888777555566777788888888888876432 2345567
Q ss_pred cCCCeeccccCcccccCCCCCc--cCcccccccccCCcc
Q 048153 218 ATFSESSYEGNHFLCGLPLPIC--RSPVTMLKASTTNKE 254 (257)
Q Consensus 218 ~~L~~l~l~~n~~~~~~~~~~~--~~~l~~l~~~~~~~~ 254 (257)
++|+.|.+.||.+. .+|..-. .+.|+.||+.+|-.-
T Consensus 392 ~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhhhheeecCceee-ecchhhhccCcccceecCCCCcce
Confidence 88888888888743 3554442 378888888777543
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=7.9e-22 Score=156.42 Aligned_cols=237 Identities=19% Similarity=0.209 Sum_probs=164.1
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccC-ceecccCCCCCcCCc-ccccccCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSN-NNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
.++|..|+|+.+.+.+|+.+++|+.|||++|.++.+-|++|.+++++..|.+++ |+|+.++.+.|..+. +..+..+-+
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 478999999988899999999999999999999999999999999999887776 999988888887654 222222222
Q ss_pred CCCCCcchhhhhh----------------hh-hhhcccchhhccccccc-------------------------------
Q 048153 80 SLKPFETSFLVKN----------------IY-IYREKKILEIFEFTTKN------------------------------- 111 (257)
Q Consensus 80 ~l~~~~~~~~~~~----------------~~-~~~~~~~l~~~~~~~~~------------------------------- 111 (257)
.+..+....+... -+ .+..+...+.+-...+.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 2221111100000 00 00000011111111110
Q ss_pred -----cccccccccccccceE--Ec-ccCccccccC-CCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcc
Q 048153 112 -----IAYTYQGRVVSYLSGL--DL-SCNKLICHIS-PQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182 (257)
Q Consensus 112 -----~~~~~~~~~~~~L~~L--~l-s~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 182 (257)
+..........+++.+ .+ +.+....+-| ..|..+++|++|++++|+++.+.+.+|.+..+++.|.+..|++
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence 0000000111111111 11 1111222222 3578899999999999999999999999999999999999999
Q ss_pred cccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI 238 (257)
Q Consensus 183 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 238 (257)
.......|.++..|++|+|.+|+++...|..+..+.+|.+|++-+|||.|.|-.-+
T Consensus 311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence 86667788999999999999999998889999999999999999999999987544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.1e-21 Score=164.39 Aligned_cols=247 Identities=26% Similarity=0.324 Sum_probs=138.9
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL 81 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l 81 (257)
+|||+.|++. ..|..+...+++-.|++++|.+..+..+-|..+..|-+||+++|++..++|+.-....+..+..+.+.+
T Consensus 107 ~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 107 ILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 4667777766 566666666777777777777763333344566666677777777666555543322233333332222
Q ss_pred CCCcchhh------------------hhhhhhhhcccchhhcccccccccccccc-ccccccceEEcccCccccccCCCc
Q 048153 82 KPFETSFL------------------VKNIYIYREKKILEIFEFTTKNIAYTYQG-RVVSYLSGLDLSCNKLICHISPQI 142 (257)
Q Consensus 82 ~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~ 142 (257)
..+.--.. .........+.++.-++++.+.+...+.+ ..+++|+.|.+|+|.++ .+....
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~ 264 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE 264 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccH
Confidence 11111000 00111222333444555555554443333 12455666666666665 333344
Q ss_pred CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc-CChhhhcCCCCCEEEccCCcccCCCChhhhhccCCC
Q 048153 143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK-IPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS 221 (257)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 221 (257)
..+.+|++|++++|+++ ..|+++..++.|+.|.+.+|+++-. +|..++.+.+|+.+..++|.++ .+|+++..|+.|+
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 44556666666666666 5666666666666666666665421 4556666666667766666666 7777777777777
Q ss_pred eeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153 222 ESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK 253 (257)
Q Consensus 222 ~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~ 253 (257)
.|.++.|.+.. .|..+ ..+.++.||+..|..
T Consensus 343 kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 343 KLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred Hhcccccceee-chhhhhhcCCcceeeccCCcC
Confidence 77777777554 56555 557777777766654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=4.1e-21 Score=152.87 Aligned_cols=238 Identities=21% Similarity=0.339 Sum_probs=151.5
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL 81 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l 81 (257)
+|++.+|+++ ..|.+++.+..+..++.++|++. .+|..++.++++..++.++|.+....++......+..+....+++
T Consensus 72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQI 149 (565)
T ss_pred EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccccc
Confidence 3555555555 44555555555566666666555 455555666666666666666655555555555555555555555
Q ss_pred CCCcchhhhhhhhhhhcccchhhcccccccccccccc-ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG-RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
..++..... ...+..+....+.+...... ..++.|++++...|.++ .+|+.++++.+|..|++.+|++.
T Consensus 150 ~slp~~~~~--------~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 150 SSLPEDMVN--------LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred ccCchHHHH--------HHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence 555443321 11222222333322221111 11566888888888776 66677888888888888888888
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhh-hcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCc
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQL-VELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPIC 239 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 239 (257)
..| .|+++..|+.|+++.|+++ .+|... .+++++..||++.|+++ +.|.++.-+.+|.++|+++|.+.. .|...-
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLg 295 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLG 295 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccc
Confidence 455 7788888888888888887 555444 47888888888888887 788887778888888888888665 565555
Q ss_pred cCcccccccccCCccc
Q 048153 240 RSPVTMLKASTTNKEM 255 (257)
Q Consensus 240 ~~~l~~l~~~~~~~~~ 255 (257)
+.-++.|-+-+|..+.
T Consensus 296 nlhL~~L~leGNPlrT 311 (565)
T KOG0472|consen 296 NLHLKFLALEGNPLRT 311 (565)
T ss_pred cceeeehhhcCCchHH
Confidence 5567777666665543
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=6.1e-21 Score=135.63 Aligned_cols=173 Identities=27% Similarity=0.428 Sum_probs=115.3
Q ss_pred EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK 82 (257)
Q Consensus 3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~ 82 (257)
|-|++|+++ .+|..++.+.+|+.|++.+|+++ ..|..++.+++|++|++..|++. ..|..|+.
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-------------- 100 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-------------- 100 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC--------------
Confidence 456666666 44555666677777777777766 56666666777777777666664 33443333
Q ss_pred CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccc-cccCCCcCCCCCcCEEeccCCccccC
Q 048153 83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLI-CHISPQIGNLTRIQTLNLSHNDLIGT 161 (257)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 161 (257)
++.|+.|++++|.+. ..+|..|-.+..|+.|+++.|.++ .
T Consensus 101 --------------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~ 141 (264)
T KOG0617|consen 101 --------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-I 141 (264)
T ss_pred --------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-c
Confidence 566777777777765 345666777777777778887777 6
Q ss_pred CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc---CCCeeccccCccccc
Q 048153 162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA---TFSESSYEGNHFLCG 233 (257)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---~L~~l~l~~n~~~~~ 233 (257)
.|..++.+++|+.|.++.|.+- .+|..++.+..|+.|.+.+|+++ -+|.+++++. +=..+.+..|||...
T Consensus 142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 6667777777888888877776 67777777777788888888777 5555555442 223455666776653
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=5.7e-20 Score=154.14 Aligned_cols=224 Identities=26% Similarity=0.325 Sum_probs=171.7
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC---c--------
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT---T-------- 70 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~-------- 70 (257)
+|+|++|+|..+..+.|.++.-|-+||+++|++. .+|+....+..|++|.+++|++...--..+..+ .
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 6899999999766678889999999999999998 788889999999999999998742211111111 1
Q ss_pred ---------------ccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccc-cccccccceEEcccCcc
Q 048153 71 ---------------LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ-GRVVSYLSGLDLSCNKL 134 (257)
Q Consensus 71 ---------------l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~ls~n~~ 134 (257)
+..++.+.+.+..++.. .-.+..+.-++++.+.+..... .....+|++|.+|.|.+
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec--------ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC--------LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCCcchHH--------HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 11222222333322222 2233445556666666544322 23367899999999999
Q ss_pred ccccCCCcCCCCCcCEEeccCCccc-cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChh
Q 048153 135 ICHISPQIGNLTRIQTLNLSHNDLI-GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213 (257)
Q Consensus 135 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 213 (257)
+ .+|+.++.+++|+.|.+..|+++ .-+|.-++.+..|+.+..++|.+. ..|..++++..|+.|.|+.|++- .+|++
T Consensus 281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea 357 (1255)
T KOG0444|consen 281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA 357 (1255)
T ss_pred c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence 8 88999999999999999999865 246778899999999999999998 89999999999999999999998 88999
Q ss_pred hhhccCCCeeccccCcccccCCCC
Q 048153 214 TAQFATFSESSYEGNHFLCGLPLP 237 (257)
Q Consensus 214 ~~~~~~L~~l~l~~n~~~~~~~~~ 237 (257)
+.-++.|..|+++.||-+--.|-+
T Consensus 358 IHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhhcCCcceeeccCCcCccCCCCc
Confidence 999999999999999877654543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.1e-20 Score=150.50 Aligned_cols=238 Identities=25% Similarity=0.282 Sum_probs=187.3
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL 81 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l 81 (257)
.++++.|.+.. ..+.+.++..+.++.+.+|++. ..|++++.+..++.+++++|++...+++......+..+..+.+.+
T Consensus 49 ~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 49 KLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 36788999984 4556889999999999999998 688889999999999999999988777777777777777777776
Q ss_pred CCCcchhhhhhhhhhhcccchhhcccccccccccccc-ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG-RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
..++..+..- -.++.+....+.+...+.+ ..+..+..+++.+|++....|.... |+.|++++...|.++
T Consensus 127 ~el~~~i~~~--------~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 127 KELPDSIGRL--------LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred eecCchHHHH--------hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 6655544321 1222333333333333222 2255688889999999855554444 999999999999999
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChh-hhhccCCCeeccccCcccccCCCCCc
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW-TAQFATFSESSYEGNHFLCGLPLPIC 239 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~ 239 (257)
..|+.++++.+|..|+++.|+++ ..| .|.++..|+.|.+..|.++ .+|.+ ..+++++..+|+++|+ +.+.|..+|
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc-cccCchHHH
Confidence 78889999999999999999998 777 6888999999999999999 66655 4589999999999999 667899999
Q ss_pred cC-cccccccccCCccc
Q 048153 240 RS-PVTMLKASTTNKEM 255 (257)
Q Consensus 240 ~~-~l~~l~~~~~~~~~ 255 (257)
.- ++..||+|.|+...
T Consensus 273 lLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS 289 (565)
T ss_pred HhhhhhhhcccCCcccc
Confidence 84 59999999998653
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=9.3e-19 Score=152.02 Aligned_cols=224 Identities=26% Similarity=0.333 Sum_probs=141.0
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+++|++.|+++ -+|+.+..+.+|+.+...+|++. ..|..+..+.+|+.|.+.+|.+..+++..-....+..++...+.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 36788888888 45677888888888888888886 67777777777888888888876554433334446667777777
Q ss_pred CCCCcchhhhhhhhhhh------------------cccchhhccccccccccc--cccccccccceEEcccCccccccCC
Q 048153 81 LKPFETSFLVKNIYIYR------------------EKKILEIFEFTTKNIAYT--YQGRVVSYLSGLDLSCNKLICHISP 140 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~~--~~~~~~~~L~~L~ls~n~~~~~~~~ 140 (257)
+..++...+........ ....+..+++..|.+... ......++|+.|++++|.+.+....
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 77776633322211111 111233333333333221 2223356677777777777655555
Q ss_pred CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCC-CChhhhhccC
Q 048153 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGK-IPEWTAQFAT 219 (257)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~ 219 (257)
.+.++..|+.|++++|+++ ..|+.+..++.|++|....|++. ..| .+..++.|+.+|++.|+++.. +|... .-++
T Consensus 402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~ 477 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPN 477 (1081)
T ss_pred HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcc
Confidence 6667777777777777777 45677777777777777777776 556 566677777777777777642 22222 1267
Q ss_pred CCeeccccCcc
Q 048153 220 FSESSYEGNHF 230 (257)
Q Consensus 220 L~~l~l~~n~~ 230 (257)
|+.||++||.+
T Consensus 478 LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 478 LKYLDLSGNTR 488 (1081)
T ss_pred cceeeccCCcc
Confidence 77777777775
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-18 Score=123.34 Aligned_cols=161 Identities=25% Similarity=0.448 Sum_probs=140.4
Q ss_pred ccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhh
Q 048153 18 VDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYR 97 (257)
Q Consensus 18 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (257)
+-.+.+.+.|-+++|+++ ..|+.+..+.+|+.|++.+|.++..+++.. .
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~is-s----------------------------- 77 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSIS-S----------------------------- 77 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhh-h-----------------------------
Confidence 345677888999999998 677788999999999999999986544321 1
Q ss_pred cccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc-cCCCccccCccCCCEEE
Q 048153 98 EKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI-GTIPSTFSNLKHIESLD 176 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ 176 (257)
+++|+.|.+.-|++. ..|..|..++.|+.|++++|.+. ...|..|..+..|+.|.
T Consensus 78 -----------------------l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 78 -----------------------LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred -----------------------chhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 677899999999887 88999999999999999999876 46788899999999999
Q ss_pred ccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 177 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+++|.+. .+|..++.+.+|+.|.++.|.+. ..|.+++.+..|+++.+++|.+.--.|
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 9999999 88999999999999999999999 889999999999999999998665433
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=3.8e-15 Score=139.81 Aligned_cols=246 Identities=21% Similarity=0.254 Sum_probs=153.4
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC-
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS- 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~- 79 (257)
++|+|+++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|..-...|.......+..+....+
T Consensus 637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 4688887764445664 78889999999998766667888888888999999987643233343332222322222211
Q ss_pred CCCCCcchh-------hh----hhhhhhhcccchhhccccccc---cc----c--ccccccccccceEEcccCccccccC
Q 048153 80 SLKPFETSF-------LV----KNIYIYREKKILEIFEFTTKN---IA----Y--TYQGRVVSYLSGLDLSCNKLICHIS 139 (257)
Q Consensus 80 ~l~~~~~~~-------~~----~~~~~~~~~~~l~~~~~~~~~---~~----~--~~~~~~~~~L~~L~ls~n~~~~~~~ 139 (257)
.+..++... .. ........+..+..+.+.... +. . ......+++|++|++++|.....+|
T Consensus 716 ~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 716 RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence 111111000 00 000000011222222221110 00 0 0011124679999999988777788
Q ss_pred CCcCCCCCcCEEeccCCc-cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc
Q 048153 140 PQIGNLTRIQTLNLSHND-LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA 218 (257)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 218 (257)
..+..+++|+.|++++|. +. ..|... .+++|+.|++++|..-..+|.. ..+|+.|++++|.+. .+|.++..++
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~ 869 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFS 869 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCC
Confidence 889999999999999885 54 556554 6788999999988543344443 367889999999887 7788888899
Q ss_pred CCCeeccccCcccccCCCCCcc-CcccccccccCCc
Q 048153 219 TFSESSYEGNHFLCGLPLPICR-SPVTMLKASTTNK 253 (257)
Q Consensus 219 ~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~~~~~~~ 253 (257)
+|+.|++++|+-+..+|..... ..++.++++++..
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 9999999988777777766533 6666777776653
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=1.3e-15 Score=135.21 Aligned_cols=118 Identities=22% Similarity=0.355 Sum_probs=62.1
Q ss_pred ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA 202 (257)
Q Consensus 123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 202 (257)
.|++|++++|.++. +|..+ .++|+.|++++|.++. .|..+. ++|+.|++++|+++ .+|..+ .++|+.|+++
T Consensus 305 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs 375 (754)
T PRK15370 305 GITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVS 375 (754)
T ss_pred hHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECC
Confidence 34444444444442 22222 1356666666666653 333332 46666677666666 445433 2466677777
Q ss_pred CCcccCCCChhhhhccCCCeeccccCcccccCCCCC--c---cCcccccccccCCc
Q 048153 203 HNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI--C---RSPVTMLKASTTNK 253 (257)
Q Consensus 203 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~---~~~l~~l~~~~~~~ 253 (257)
+|++. .+|..+. ..|+.|++++|.+. .+|..+ | .+.+..+++.+|..
T Consensus 376 ~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 376 RNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 77666 3444332 25666667776654 345433 1 14556666666653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=5.2e-15 Score=131.03 Aligned_cols=101 Identities=24% Similarity=0.279 Sum_probs=64.2
Q ss_pred ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA 202 (257)
Q Consensus 123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 202 (257)
+|+.|++++|.+.. +|.. ..+|+.|++++|.+++ .|.. .++|+.|++++|+++ .+|.. ..+|+.|+++
T Consensus 363 ~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 363 ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVY 430 (788)
T ss_pred ccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhc
Confidence 44444444444442 2221 2356777777777764 3322 246777778887777 35543 2456778888
Q ss_pred CCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 203 HNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 203 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
+|++. .+|..+..+++|+.+++++|++.+..|.
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 88887 6777777888888888888888766544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1e-14 Score=129.19 Aligned_cols=226 Identities=20% Similarity=0.219 Sum_probs=111.6
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL 81 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l 81 (257)
.|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|.++.++ ... ..+..+....+.+
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP-~lp--~sL~~L~Ls~N~L 274 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLP-VLP--PGLLELSIFSNPL 274 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCccc-Ccc--cccceeeccCCch
Confidence 5788888888 5666554 47888888888887 3443 2467888888888887543 221 1222333333333
Q ss_pred CCCcchhh---------hhhhhhhhcccchhhcccccccccccccc------------------ccccccceEEcccCcc
Q 048153 82 KPFETSFL---------VKNIYIYREKKILEIFEFTTKNIAYTYQG------------------RVVSYLSGLDLSCNKL 134 (257)
Q Consensus 82 ~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------~~~~~L~~L~ls~n~~ 134 (257)
..++.... ............|+.++++.|.+...... ..+..|++|++++|.+
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQL 354 (788)
T ss_pred hhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCcc
Confidence 32221000 00000000011233333333322221110 0112344444444444
Q ss_pred ccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhh
Q 048153 135 ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWT 214 (257)
Q Consensus 135 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 214 (257)
++ +|.. ..+|+.|++++|.++. .|.. ...|+.|++++|+++ .+|.. .++|+.|++++|.+. .+|..
T Consensus 355 s~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l- 420 (788)
T PRK15387 355 AS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML- 420 (788)
T ss_pred CC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc-
Confidence 32 2211 1233444444444442 2211 135666666666666 33432 245677777777766 34543
Q ss_pred hhccCCCeeccccCcccccCCCCCcc-CcccccccccCCcc
Q 048153 215 AQFATFSESSYEGNHFLCGLPLPICR-SPVTMLKASTTNKE 254 (257)
Q Consensus 215 ~~~~~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~~~~~~~~ 254 (257)
..+|+.|++++|.+. .+|..++. ..++.+++++|+..
T Consensus 421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 235677777777754 56766553 67778888887654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=7e-15 Score=130.64 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=126.1
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhC-------------------CCCCCeeeccCceecccC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-------------------LNQLQLLDLSNNNLHGLI 62 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------l~~L~~L~l~~n~l~~~~ 62 (257)
.|+|++|+++ .+|..+. .+|++|++++|.++ .+|..+.. ..+|+.|++++|+++.+
T Consensus 203 ~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L- 277 (754)
T PRK15370 203 TLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCL- 277 (754)
T ss_pred EEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCcc-
Confidence 5677777777 3443332 35666666666665 33433321 02455555555555432
Q ss_pred CCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCc
Q 048153 63 PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQI 142 (257)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 142 (257)
|..+. ..+..+..+.+.+..++... ...+..+++..+.+.... ....++|++|++++|.+++ +|..+
T Consensus 278 P~~l~-~sL~~L~Ls~N~Lt~LP~~l----------p~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~Lt~-LP~~l 344 (754)
T PRK15370 278 PENLP-EELRYLSVYDNSIRTLPAHL----------PSGITHLNVQSNSLTALP-ETLPPGLKTLEAGENALTS-LPASL 344 (754)
T ss_pred ccccC-CCCcEEECCCCccccCcccc----------hhhHHHHHhcCCccccCC-ccccccceeccccCCcccc-CChhh
Confidence 22111 12333333444444332211 013444555555544332 2235789999999999985 55555
Q ss_pred CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh----cc
Q 048153 143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ----FA 218 (257)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~----~~ 218 (257)
. ++|+.|++++|.++ ..|..+. +.|+.|++++|+++ .+|..+. ..|+.|++++|++. .+|..+.. ++
T Consensus 345 ~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~ 415 (754)
T PRK15370 345 P--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGP 415 (754)
T ss_pred c--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCC
Confidence 3 68999999999998 4565553 68999999999999 5666554 37999999999998 66655443 47
Q ss_pred CCCeeccccCccc
Q 048153 219 TFSESSYEGNHFL 231 (257)
Q Consensus 219 ~L~~l~l~~n~~~ 231 (257)
.+..+++.+|++.
T Consensus 416 ~l~~L~L~~Npls 428 (754)
T PRK15370 416 QPTRIIVEYNPFS 428 (754)
T ss_pred CccEEEeeCCCcc
Confidence 8899999999975
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=3.8e-17 Score=142.17 Aligned_cols=222 Identities=23% Similarity=0.277 Sum_probs=155.4
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc--ccccccCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT--LHESYSNGS 79 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l~~~~~~~~ 79 (257)
.++..+|+++ .+|..+..+.+|++|.+.+|.+++ +|+...++++|++|++..|.+...++..+.... +..+..+.+
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 4667778886 677777788888888888888884 555566788888888888888755443332211 111111111
Q ss_pred CCCC-----------------Ccchhhhhhhhhhhcccchhhcccccccccccccccc--ccccceEEcccCccccccCC
Q 048153 80 SLKP-----------------FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV--VSYLSGLDLSCNKLICHISP 140 (257)
Q Consensus 80 ~l~~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~L~~L~ls~n~~~~~~~~ 140 (257)
.+.. .++......+..+..+.+|+++.++.|.+..++.... +..|++|++|||+++ .+|+
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 1111 1122222335556677788999999887766554433 678999999999998 7778
Q ss_pred CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCC
Q 048153 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATF 220 (257)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 220 (257)
.+..++.|++|....|.+. ..| .+..++.|+.+|++.|+++..........++|++||++||.-.......+..+.++
T Consensus 425 tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSL 502 (1081)
T ss_pred HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhh
Confidence 9999999999999999999 566 77889999999999999984332222233899999999998543555566667777
Q ss_pred CeeccccC
Q 048153 221 SESSYEGN 228 (257)
Q Consensus 221 ~~l~l~~n 228 (257)
...++.-|
T Consensus 503 ~~~~i~~~ 510 (1081)
T KOG0618|consen 503 SQMDITLN 510 (1081)
T ss_pred hheecccC
Confidence 76666655
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=3e-14 Score=133.84 Aligned_cols=236 Identities=19% Similarity=0.162 Sum_probs=145.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC-
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS- 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~- 79 (257)
+.|++.++.+. .+|..| ...+|+.|++.++++. .++..+..+++|+.++++++...+..|.......+..+....+
T Consensus 592 r~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 592 RLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS 668 (1153)
T ss_pred EEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence 35777777777 567666 4688999999999887 5667778888999999987654344454322233444443322
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL 158 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (257)
.+..++. ....+..|+.+++..+ .+...+....+++|++|++++|......|.. ..+|+.|++++|.+
T Consensus 669 ~L~~lp~--------si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 669 SLVELPS--------SIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred Cccccch--------hhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 1222221 1233445555555543 3333333334788999999998755455543 45789999999987
Q ss_pred ccCCCcccc------------------------------CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC
Q 048153 159 IGTIPSTFS------------------------------NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208 (257)
Q Consensus 159 ~~~~~~~~~------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 208 (257)
+. .|..+. ..++|+.|++++|.....+|..++++++|+.|++++|...+
T Consensus 738 ~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 738 EE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 74 343221 12356666666665544566667777777777777765444
Q ss_pred CCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153 209 KIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 209 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
.+|..+ .+++|+.|++++|..+..+|.. ...+++|++++|..+
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE 859 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc
Confidence 556554 5667777777777666555543 245677777776543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=6.4e-16 Score=126.27 Aligned_cols=249 Identities=21% Similarity=0.189 Sum_probs=152.0
Q ss_pred CEEEccccccccc----CCccccCcccCcEeeCcCCcccc------cCChhhhCCCCCCeeeccCceecccCCCCCcC--
Q 048153 1 MILDLSYNRLNGS----IPDLVDGLSQLSHLILAHNNLEG------KVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-- 68 (257)
Q Consensus 1 ~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 68 (257)
+.|+++++.++.. ++..+...+.+++++++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 3677888887422 44455666778888888877652 23345666778888888888775433222211
Q ss_pred --CcccccccCCCCCCCCcchhhhhhhhhhhcc-cchhhcccccccccccc------ccccccccceEEcccCccccc--
Q 048153 69 --TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTY------QGRVVSYLSGLDLSCNKLICH-- 137 (257)
Q Consensus 69 --~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~------~~~~~~~L~~L~ls~n~~~~~-- 137 (257)
..+..+....+.+....... ........ ..++.+++..+.+.... .......|++|++++|.+++.
T Consensus 106 ~~~~L~~L~ls~~~~~~~~~~~---l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 106 RSSSLQELKLNNNGLGDRGLRL---LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred ccCcccEEEeeCCccchHHHHH---HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 11333444333333211111 11222233 45666666666544210 111245799999999988732
Q ss_pred --cCCCcCCCCCcCEEeccCCccccCC----CccccCccCCCEEEccCCcccccCChhhhc-----CCCCCEEEccCCcc
Q 048153 138 --ISPQIGNLTRIQTLNLSHNDLIGTI----PSTFSNLKHIESLDLSYNQLNGKIPLQLVE-----LNTLAVFSVAHNNL 206 (257)
Q Consensus 138 --~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l 206 (257)
++..+..+++|++|++++|.+++.. ...+..+++|+.|++++|.+++.....+.. .+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 2334555678999999999887443 334556788999999999988533333322 37999999999988
Q ss_pred cC----CCChhhhhccCCCeeccccCccccc----CC-CCCcc-CcccccccccCC
Q 048153 207 SG----KIPEWTAQFATFSESSYEGNHFLCG----LP-LPICR-SPVTMLKASTTN 252 (257)
Q Consensus 207 ~~----~~~~~~~~~~~L~~l~l~~n~~~~~----~~-~~~~~-~~l~~l~~~~~~ 252 (257)
.+ .+...+..+++|+.+++++|++... .. ...|. ..++++++.++.
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 73 2234455567899999999988754 22 11255 678888877653
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=1.2e-15 Score=124.66 Aligned_cols=249 Identities=20% Similarity=0.162 Sum_probs=159.1
Q ss_pred EEEccccccc-ccCCccccCcccCcEeeCcCCccccc----CChhhhCCCCCCeeeccCceecccC------CCCCc-CC
Q 048153 2 ILDLSYNRLN-GSIPDLVDGLSQLSHLILAHNNLEGK----VPVQLCRLNQLQLLDLSNNNLHGLI------PPCFD-NT 69 (257)
Q Consensus 2 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~-~~ 69 (257)
.|+|..+.++ ......|..+.+|++++++++.++.. ++..+...+.+++++++++.+.+.. +..+. ..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5889899988 44556778888999999999998532 4455667788999999998875311 11111 12
Q ss_pred cccccccCCCCCCCCcchhhhhhhhhhhcccchhhcccccccccccc------ccccc-cccceEEcccCcccc----cc
Q 048153 70 TLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY------QGRVV-SYLSGLDLSCNKLIC----HI 138 (257)
Q Consensus 70 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~-~~L~~L~ls~n~~~~----~~ 138 (257)
.+..+....+.+.......+.. .... ..++.+.+..+.+.... ..... ++|+.|++++|.+++ ..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~---l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLES---LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHH---Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 2444444444443211111111 1111 33666666655443211 11123 789999999999873 23
Q ss_pred CCCcCCCCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCCC
Q 048153 139 SPQIGNLTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGKI 210 (257)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~ 210 (257)
+..+..+.+|++|++++|.+++. .+..+...++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 34566778899999999998842 2333455579999999999887433 334556789999999999988644
Q ss_pred Chhhhh-----ccCCCeeccccCcccccCCC----CC-ccCcccccccccCCcc
Q 048153 211 PEWTAQ-----FATFSESSYEGNHFLCGLPL----PI-CRSPVTMLKASTTNKE 254 (257)
Q Consensus 211 ~~~~~~-----~~~L~~l~l~~n~~~~~~~~----~~-~~~~l~~l~~~~~~~~ 254 (257)
...+.. .+.|+.+++++|.+...-.. .. ..+.++.++++.|+-.
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 443332 27999999999987521111 11 2278899999988653
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=8.2e-16 Score=122.58 Aligned_cols=207 Identities=22% Similarity=0.196 Sum_probs=135.3
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcC-CcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCccc-------
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLH------- 72 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~------- 72 (257)
|+|||+.|+|+.+-|.+|.+++.+..|.+-+ |+++...-..|.++..++.|.+..|++..+..+.+..+...
T Consensus 94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence 6799999999999999999999988876665 88886555556666656655555555543333332222211
Q ss_pred ------------------cccc------CCCCCCCC---------cchhhhh-hhhhh--hccc------chhh---c--
Q 048153 73 ------------------ESYS------NGSSLKPF---------ETSFLVK-NIYIY--REKK------ILEI---F-- 105 (257)
Q Consensus 73 ------------------~~~~------~~~~l~~~---------~~~~~~~-~~~~~--~~~~------~l~~---~-- 105 (257)
.+.. ...++... ..++... ..+.. ...+ .+.. +
T Consensus 174 n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s 253 (498)
T KOG4237|consen 174 NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS 253 (498)
T ss_pred hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH
Confidence 0000 01111100 0000000 00000 0000 0000 0
Q ss_pred -ccccccccccccc---ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCc
Q 048153 106 -EFTTKNIAYTYQG---RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181 (257)
Q Consensus 106 -~~~~~~~~~~~~~---~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 181 (257)
...........+. ..+++|+.|++++|.++.+-+.+|.+...++.|.+..|++..+....|.++..|++|++.+|+
T Consensus 254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 0001111111111 337889999999999999999999999999999999999998888899999999999999999
Q ss_pred ccccCChhhhcCCCCCEEEccCCccc
Q 048153 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207 (257)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~L~~n~l~ 207 (257)
|+...|.+|.....|.+|.|-+|.+-
T Consensus 334 it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 334 ITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eEEEecccccccceeeeeehccCccc
Confidence 99888999999999999999988765
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=121.11 Aligned_cols=119 Identities=34% Similarity=0.598 Sum_probs=108.7
Q ss_pred ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA 202 (257)
Q Consensus 123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 202 (257)
.++.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChhhhhc-cCCCeeccccCcccccCCC-CCccC
Q 048153 203 HNNLSGKIPEWTAQF-ATFSESSYEGNHFLCGLPL-PICRS 241 (257)
Q Consensus 203 ~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~-~~~~~ 241 (257)
+|++.+.+|..+... .++..+++.+|+.+|.+|. ..|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence 999999999988764 5778999999999998875 33754
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=2e-14 Score=119.69 Aligned_cols=176 Identities=29% Similarity=0.502 Sum_probs=121.2
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL 81 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l 81 (257)
..||+.|++. .+|..+..+..|+.+.+.+|.+. .+|..++.+..|++++++.|.++.. |..++.+.+..+....+.+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lpLkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLPLKVLIVSNNKL 155 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcCcceeEEEecCcc
Confidence 3577788887 67777777778888888888777 6777788888888888888888643 4444444444444433433
Q ss_pred CCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153 82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT 161 (257)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 161 (257)
+.++..+ + ...+|.+|+.+.|.+. .+|..+.++..|+.|.+..|.+. .
T Consensus 156 ~~lp~~i-----------------------------g-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~ 203 (722)
T KOG0532|consen 156 TSLPEEI-----------------------------G-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-D 203 (722)
T ss_pred ccCCccc-----------------------------c-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-h
Confidence 3332211 1 2556777778888777 55667777788888888888777 4
Q ss_pred CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhh
Q 048153 162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTA 215 (257)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 215 (257)
.|..+.. -.|..||++.|+++ .+|-.|.++..|++|-|.+|.++ .+|..+.
T Consensus 204 lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 204 LPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred CCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 5556554 35777888888887 67777888888888888888887 6666554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=1.5e-12 Score=95.71 Aligned_cols=125 Identities=22% Similarity=0.300 Sum_probs=51.1
Q ss_pred ccccceEEcccCccccccCCCcC-CCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhh-hcCCCCCE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIG-NLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQL-VELNTLAV 198 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~ 198 (257)
...+++|++.+|.++.+ . .+. .+.+|+.|++++|.++.+ +.+..++.|++|++++|+++. +...+ ..+|+|++
T Consensus 18 ~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 44688999999999843 2 444 578899999999999954 357788999999999999984 44444 46899999
Q ss_pred EEccCCcccCCC-ChhhhhccCCCeeccccCcccccCCCCC----ccCccccccccc
Q 048153 199 FSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLCGLPLPI----CRSPVTMLKAST 250 (257)
Q Consensus 199 L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~l~~l~~~~ 250 (257)
|++++|++.+.- -..++.+++|+.|++.+||+....-... ..++++.||...
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999998533 3567789999999999999764321111 448888887643
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=8.5e-12 Score=105.03 Aligned_cols=107 Identities=33% Similarity=0.547 Sum_probs=52.3
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
.+.|+.|++++|.++ .+|........|+.+.+++|.+. ..+..+.....+..+.+.+|++. ..+..++.++.++.|+
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence 344555555555555 33332233344555555555322 23334444455555555555554 2344445555555555
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 232 (257)
+++|.+.. ++. ++...+++.+++++|.+..
T Consensus 262 ~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 262 LSNNQISS-ISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccccc-ccc-ccccCccCEEeccCccccc
Confidence 55555552 222 4445555555555555443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=1.1e-12 Score=109.50 Aligned_cols=166 Identities=25% Similarity=0.372 Sum_probs=124.6
Q ss_pred EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK 82 (257)
Q Consensus 3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~ 82 (257)
+.|..|.+. .+|..+.++..|++++++.|+++ ..|..++.+| |+.|.+++|+++..++..-....+..++.+.+.+.
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh
Confidence 456778888 78889999999999999999998 7888888875 99999999999865554433333444444444433
Q ss_pred CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC
Q 048153 83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI 162 (257)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 162 (257)
.++... -.+.+|+.|.+..|.+. .+|+.+. .-.|..||++.|++. .+
T Consensus 180 slpsql------------------------------~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 180 SLPSQL------------------------------GYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred hchHHh------------------------------hhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence 322211 11566888889999988 5566666 556899999999999 68
Q ss_pred CccccCccCCCEEEccCCcccccCChhhhc---CCCCCEEEccCCc
Q 048153 163 PSTFSNLKHIESLDLSYNQLNGKIPLQLVE---LNTLAVFSVAHNN 205 (257)
Q Consensus 163 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~L~~n~ 205 (257)
|-.|..|.+|++|-|.+|-+. ..|..++. ..=.++|+.+.|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 889999999999999999998 66666533 3445677777774
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=9.5e-13 Score=103.69 Aligned_cols=229 Identities=21% Similarity=0.246 Sum_probs=159.1
Q ss_pred EEEcccccccc----cCCccccCcccCcEeeCcCC---cccccCCh-------hhhCCCCCCeeeccCceecccCCCCC-
Q 048153 2 ILDLSYNRLNG----SIPDLVDGLSQLSHLILAHN---NLEGKVPV-------QLCRLNQLQLLDLSNNNLHGLIPPCF- 66 (257)
Q Consensus 2 ~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n---~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~- 66 (257)
.++|++|.+.. .+...++..++|+..++++- ++...+|. ++...|+|+++++++|-+....+..+
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 58888988872 23445667778888877763 23333443 34567789999999998854433332
Q ss_pred ----cCCcccccccCCCCCCCCcchhhhhh------hhhhhcccchhhcccccccccccccc------ccccccceEEcc
Q 048153 67 ----DNTTLHESYSNGSSLKPFETSFLVKN------IYIYREKKILEIFEFTTKNIAYTYQG------RVVSYLSGLDLS 130 (257)
Q Consensus 67 ----~~~~l~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~L~~L~ls 130 (257)
....+.+++.+.+.+....+....+. .+....-..++++.+..|++.+.... ...+.|+.+.+.
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~ 193 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS 193 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence 22346677777777777766655542 23333444678888888876654322 235789999999
Q ss_pred cCcccc----ccCCCcCCCCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccCChhh-----hcCCCCC
Q 048153 131 CNKLIC----HISPQIGNLTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKIPLQL-----VELNTLA 197 (257)
Q Consensus 131 ~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~ 197 (257)
.|.+.. .....+..+++|+.|++..|.++.. ..+++..+++|+.+++++|.++.....++ ...|.|+
T Consensus 194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE 273 (382)
T ss_pred cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence 998752 2334678899999999999998743 44566788999999999999986555444 2368999
Q ss_pred EEEccCCcccCCC----ChhhhhccCCCeeccccCcc
Q 048153 198 VFSVAHNNLSGKI----PEWTAQFATFSESSYEGNHF 230 (257)
Q Consensus 198 ~L~L~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~ 230 (257)
++.+.+|.++..- ....+..|.|..|++++|.+
T Consensus 274 vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 274 VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999999998532 23344578999999999997
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=4.1e-11 Score=105.93 Aligned_cols=105 Identities=28% Similarity=0.467 Sum_probs=93.7
Q ss_pred cCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeecccc
Q 048153 148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEG 227 (257)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~ 227 (257)
++.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcc--CcccccccccCC
Q 048153 228 NHFLCGLPLPICR--SPVTMLKASTTN 252 (257)
Q Consensus 228 n~~~~~~~~~~~~--~~l~~l~~~~~~ 252 (257)
|.+.+.+|..+.. ..+..+++++|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 9999999976533 233455555554
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.16 E-value=4.1e-11 Score=72.90 Aligned_cols=59 Identities=37% Similarity=0.578 Sum_probs=27.4
Q ss_pred CcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCc
Q 048153 147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN 205 (257)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 205 (257)
+|++|++++|.++.+.+.+|..+++|++|++++|+++...+..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444444444444444444444444443334444444444444444443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=8.2e-11 Score=86.56 Aligned_cols=121 Identities=22% Similarity=0.223 Sum_probs=53.9
Q ss_pred hhccccccccccccccc-cccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccc-cCccCCCEEEccCC
Q 048153 103 EIFEFTTKNIAYTYQGR-VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTF-SNLKHIESLDLSYN 180 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n 180 (257)
+.++...+.+....... .+.+|+.|++++|.++.. +.+..++.|++|++++|.++.+. +.+ ..+++|+.|++++|
T Consensus 22 ~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 22 RELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence 44455555544443332 367899999999999854 36888999999999999999643 334 46899999999999
Q ss_pred cccccC-ChhhhcCCCCCEEEccCCcccCCCC---hhhhhccCCCeeccc
Q 048153 181 QLNGKI-PLQLVELNTLAVFSVAHNNLSGKIP---EWTAQFATFSESSYE 226 (257)
Q Consensus 181 ~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~ 226 (257)
+|.... ...+..+++|+.|++.+|.+....- ..+..+|+|+.||-.
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 997532 3567889999999999999985422 346678999999754
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=4.5e-11 Score=100.67 Aligned_cols=129 Identities=24% Similarity=0.362 Sum_probs=104.6
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
++.|+.|++++|.+. ..|......+.|+.|++++|+++ ..|.....+..|+++.+++|... ..+..+..+..+..+.
T Consensus 162 l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE 238 (394)
T ss_pred cccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccc
Confidence 788999999999998 55544447889999999999999 45555555667999999999655 5677788899999999
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
+.+|++. ..+..++.+++++.+++++|.+.. ++.-.....++.|+.+++...
T Consensus 239 l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 239 LSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cCCceee-eccchhccccccceeccccccccc-cccccccCccCEEeccCcccc
Confidence 9999998 557778889999999999998654 444447789999999887553
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=7.4e-11 Score=71.75 Aligned_cols=61 Identities=44% Similarity=0.578 Sum_probs=57.2
Q ss_pred cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcc
Q 048153 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 182 (257)
++|++|++++|.++...+.+|.++++|++|++++|.++.+.+.+|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999988888999999999999999999999999999999999999999975
No 34
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.12 E-value=1.1e-12 Score=112.39 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=127.0
Q ss_pred ChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCCCCCCcchhhhhh--hhhhhcccchhhccccccccccc
Q 048153 39 PVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSSLKPFETSFLVKN--IYIYREKKILEIFEFTTKNIAYT 115 (257)
Q Consensus 39 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 115 (257)
|-.+..+.+|++|.+.++.+... .+ +... .-.+-....+.+..+...+.... +......+.|...+++.|.+..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~G-L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KG-LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hh-hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 55567788999999999988641 11 1110 01112223333333333333222 22233445677777877776655
Q ss_pred cc-cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCC
Q 048153 116 YQ-GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELN 194 (257)
Q Consensus 116 ~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 194 (257)
.. ...++.++.|+++.|++.... .+..+++|++||+++|.+..+..-...++ +|+.|.+++|.++. + ..+.++.
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~Lk 254 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLK 254 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh-h-hhHHhhh
Confidence 43 355789999999999998553 77889999999999999995443333444 49999999999983 3 3577889
Q ss_pred CCCEEEccCCcccCCC-ChhhhhccCCCeeccccCcccc
Q 048153 195 TLAVFSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLC 232 (257)
Q Consensus 195 ~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~ 232 (257)
+|+.||++.|-+.+.- ..-++.+..|+.|+|.|||+-|
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9999999999888532 2345567889999999999766
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.5e-11 Score=93.58 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=100.4
Q ss_pred hhcccchhhccccccccccccc-cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCE
Q 048153 96 YREKKILEIFEFTTKNIAYTYQ-GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 174 (257)
..-.+.+..++++.+.+..... .+..|.++.|++|+|.+..+. .++.+++|++|++++|.++. ...+-..+.+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence 3444567777777777766543 355788999999999887442 47888899999999998884 3334456778889
Q ss_pred EEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCeeccccCcccccC
Q 048153 175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLCGL 234 (257)
Q Consensus 175 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~ 234 (257)
|.++.|.+.. ...++.+=+|..||+++|+++... -..++.+|.|+.+.+.+||+....
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999998863 334666778899999999998432 357888999999999999977643
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=4.5e-11 Score=92.99 Aligned_cols=87 Identities=30% Similarity=0.302 Sum_probs=67.9
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVF 199 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L 199 (257)
+++|+.|++|+|.++ ....|-..+.+.++|.+++|.+... .-+..+-+|..||+++|+|.... ...++++|.|+++
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 777899999999887 4456667788899999999988732 34566678899999999887422 3467889999999
Q ss_pred EccCCcccCCC
Q 048153 200 SVAHNNLSGKI 210 (257)
Q Consensus 200 ~L~~n~l~~~~ 210 (257)
.|.+|.+.+.+
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 99999998443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.3e-10 Score=94.36 Aligned_cols=112 Identities=20% Similarity=0.184 Sum_probs=49.0
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC-CccccCccCCCEEEccCCcccccC-Chh-----hhcC
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI-PSTFSNLKHIESLDLSYNQLNGKI-PLQ-----LVEL 193 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~-----~~~~ 193 (257)
+|+++.|++.+|.....-.....-+..|+.|++++|.+-... ....+.++.|..|+++.|.+...- |+. ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 455555555555311111112223344555555555543211 122344455555555555554321 111 1334
Q ss_pred CCCCEEEccCCcccCCCC-hhhhhccCCCeeccccCcccc
Q 048153 194 NTLAVFSVAHNNLSGKIP-EWTAQFATFSESSYEGNHFLC 232 (257)
Q Consensus 194 ~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 232 (257)
++|+.|++..|++.++.. ..+..+++|+.+....|++..
T Consensus 301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 555566666655542211 233344555555555555443
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.2e-10 Score=92.17 Aligned_cols=43 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred cccCcccCcEeeCcCCcccccCC--hhhhCCCCCCeeeccCceec
Q 048153 17 LVDGLSQLSHLILAHNNLEGKVP--VQLCRLNQLQLLDLSNNNLH 59 (257)
Q Consensus 17 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~ 59 (257)
....|++++.|+++.|-+..+.+ .....+|+|+.|+++.|++.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 34455555555555555443222 11234555555566555554
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.67 E-value=1.7e-09 Score=74.67 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=85.5
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
..+|...++++|.+....+......+.++++++++|+++ ..|..++.++.|+.++++.|.+. ..|..+..+.++.+|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 456778889999888554444455668899999999999 57777999999999999999988 7777777788889999
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP 237 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 237 (257)
..+|... ++|..+-.-...-.++++.+||.+.++-.
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 9999887 66655333333445566778887766543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3e-09 Score=90.07 Aligned_cols=211 Identities=24% Similarity=0.218 Sum_probs=114.7
Q ss_pred EcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCC
Q 048153 4 DLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKP 83 (257)
Q Consensus 4 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~ 83 (257)
.+..|.+.. .-..+..+.+|..+++.+|++.... ..+..+++|++|++++|.|+.+.+-. ....+..+....+.+..
T Consensus 78 ~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 78 NLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNLISD 154 (414)
T ss_pred ccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccchh-hccchhhheeccCcchh
Confidence 355566662 2334667778888888888887332 22566778888888888886543321 11113444444444444
Q ss_pred Ccchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153 84 FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT 161 (257)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 161 (257)
+..... +..+..+++..+.+..... ...+..++.+++.+|.+... .++..+..+..+++..|.++..
T Consensus 155 ~~~~~~---------l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 155 ISGLES---------LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCCcc---------chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence 433322 3344445555554444444 24456666666666665422 2344444455556666665533
Q ss_pred CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153 162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL 231 (257)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 231 (257)
.+-....+.+|+.+++.+|.+. ..+..+..+..+..+++..|++...-. +.....+..+...+|++.
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 2211111113777777777776 333455566777777777777763221 224455666666666655
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=4.8e-09 Score=83.12 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=124.3
Q ss_pred cccCcccCcEeeCcCCcccccCChhh----hCCCCCCeeeccCceecccCCCC--------------CcCCcccccccCC
Q 048153 17 LVDGLSQLSHLILAHNNLEGKVPVQL----CRLNQLQLLDLSNNNLHGLIPPC--------------FDNTTLHESYSNG 78 (257)
Q Consensus 17 ~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~--------------~~~~~l~~~~~~~ 78 (257)
.+.++++|++++|++|-+....+..| .....|++|-+.+|.+...-... -....+..+....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34567788889999888875555444 45667888888888774211111 0112234444444
Q ss_pred CCCCCCcchhhhhhhhhhhcccchhhccccccccccccc------cccccccceEEcccCcccc----ccCCCcCCCCCc
Q 048153 79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ------GRVVSYLSGLDLSCNKLIC----HISPQIGNLTRI 148 (257)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~L~~L~ls~n~~~~----~~~~~~~~l~~L 148 (257)
+.+........... +.....++.+.+.++.+..... ....++|+.|++..|.++. .+...++.+++|
T Consensus 167 Nrlen~ga~~~A~~---~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 167 NRLENGGATALAEA---FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred cccccccHHHHHHH---HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 55544444443333 3333556666666666654332 2458899999999998863 344567888999
Q ss_pred CEEeccCCccccCCCccc-----cCccCCCEEEccCCccccc----CChhhhcCCCCCEEEccCCccc
Q 048153 149 QTLNLSHNDLIGTIPSTF-----SNLKHIESLDLSYNQLNGK----IPLQLVELNTLAVFSVAHNNLS 207 (257)
Q Consensus 149 ~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~ 207 (257)
+.|++++|.++.....++ ...+.|+.+.+.+|.++.. +...+...+.|..|+|++|++.
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 999999999986544444 2568999999999998743 2233455799999999999993
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=4.5e-08 Score=89.23 Aligned_cols=65 Identities=28% Similarity=0.358 Sum_probs=46.4
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCF 66 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 66 (257)
++|||++|.-.+.+|+.++.+.+|++|+++++.+. .+|..++.+..|.+|++..+.-...++...
T Consensus 574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred EEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchh
Confidence 46778777766677877888888888888888777 677777777778888777665433344433
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=8.4e-09 Score=87.36 Aligned_cols=222 Identities=24% Similarity=0.205 Sum_probs=148.8
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+.|++.+|+|.. +...+..+++|++|++++|.++...+ +..++.|+.|++.+|.+..+. +.-....+.......+.
T Consensus 98 ~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 98 EALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNR 173 (414)
T ss_pred eeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcccCCcch
Confidence 368999999994 44447889999999999999985443 567778999999999997542 22112234444445555
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC--cCEEeccCCcc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR--IQTLNLSHNDL 158 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~--L~~L~l~~n~l 158 (257)
+..+... . ...+..++.+....+.+...........+..+++..|.+...- .+..+.. |+.+++++|.+
T Consensus 174 i~~ie~~------~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 174 IVDIEND------E-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred hhhhhhh------h-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcc
Confidence 5444442 1 2344455666666666666555555666666788888876433 2333444 89999999998
Q ss_pred ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC---CCChh-hhhccCCCeeccccCcccccC
Q 048153 159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG---KIPEW-TAQFATFSESSYEGNHFLCGL 234 (257)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~-~~~~~~L~~l~l~~n~~~~~~ 234 (257)
.. .+..+.....+..+++..|++... ..+...+.+..+....|.+.. ..... ....+.++.+.+..|+....-
T Consensus 245 ~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 245 SR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 83 435666778999999999988742 224445677777788887762 22221 455788999999999887755
Q ss_pred CCCC
Q 048153 235 PLPI 238 (257)
Q Consensus 235 ~~~~ 238 (257)
+...
T Consensus 322 ~~~~ 325 (414)
T KOG0531|consen 322 SLDL 325 (414)
T ss_pred cccH
Confidence 5443
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=1.1e-08 Score=70.71 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=84.0
Q ss_pred cccceEEcccCccccccCCC---cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCE
Q 048153 122 SYLSGLDLSCNKLICHISPQ---IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAV 198 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 198 (257)
..+..+++++|.+... ++. +.....|++.++++|.+....+..-...+.++++++.+|.++ .+|..++.++.|+.
T Consensus 27 kE~h~ldLssc~lm~i-~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYI-ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHH-HHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3466778888876532 333 344567888999999999544444445569999999999999 78888999999999
Q ss_pred EEccCCcccCCCChhhhhccCCCeeccccCcc
Q 048153 199 FSVAHNNLSGKIPEWTAQFATFSESSYEGNHF 230 (257)
Q Consensus 199 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 230 (257)
|+++.|.+. ..|..+..+.++..|+..+|..
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 999999998 6677777899999999988864
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=8e-09 Score=89.30 Aligned_cols=128 Identities=22% Similarity=0.273 Sum_probs=100.7
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCCh-hhhcCCCCCEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL-QLVELNTLAVF 199 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L 199 (257)
...|...++++|.+. ....+++-++.+++|++++|+++.. +.+..+++|++||+++|+++ .+|. .... .+|..|
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh-hhheee
Confidence 556888899999987 5567788899999999999999944 38889999999999999998 4554 3333 459999
Q ss_pred EccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC--ccCcccccccccCCccc
Q 048153 200 SVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI--CRSPVTMLKASTTNKEM 255 (257)
Q Consensus 200 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~l~~~~~~~~~ 255 (257)
.+++|.++. ..++.++.+|+.||++.|-+...--..+ ..+.|..|.+.+|...+
T Consensus 238 ~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 238 NLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999999973 3456789999999999998775322222 44788888888887543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.6e-08 Score=77.67 Aligned_cols=102 Identities=19% Similarity=0.165 Sum_probs=69.6
Q ss_pred ccccccceEEcccCcc---ccccCCCcCCCCCcCEEeccCCc-cccCCCccccCccCCCEEEccCCcccccCChhh---h
Q 048153 119 RVVSYLSGLDLSCNKL---ICHISPQIGNLTRIQTLNLSHND-LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQL---V 191 (257)
Q Consensus 119 ~~~~~L~~L~ls~n~~---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~ 191 (257)
...++|..|.++|+.- .+.+......+++|.+||+++|. ++.....+|...+.|++|+++.|.. ..|..+ .
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~ 360 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELN 360 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeec
Confidence 3356788888888642 22333345678999999999984 6665556677889999999999974 456544 5
Q ss_pred cCCCCCEEEccCCcccCCCChhhhhccCCCe
Q 048153 192 ELNTLAVFSVAHNNLSGKIPEWTAQFATFSE 222 (257)
Q Consensus 192 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 222 (257)
..|.|.+||+.++-=.+........+++|..
T Consensus 361 s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred cCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 6799999999987544332223334566543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.4e-06 Score=48.71 Aligned_cols=36 Identities=36% Similarity=0.628 Sum_probs=18.1
Q ss_pred CCCEEEccCCcccccCChhhhcCCCCCEEEccCCccc
Q 048153 171 HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207 (257)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 207 (257)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555555555555554
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=1.8e-06 Score=48.25 Aligned_cols=38 Identities=34% Similarity=0.556 Sum_probs=23.4
Q ss_pred ccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecc
Q 048153 22 SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60 (257)
Q Consensus 22 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 60 (257)
++|++|++++|+++ .+|+.++.+++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35667777777776 344456677777777777776653
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=4.2e-06 Score=61.94 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=62.4
Q ss_pred cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEEE
Q 048153 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVFS 200 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ 200 (257)
.....+++++|.+. .. +.|++++.|.+|.+++|.|+.+.|..-.-.+.|++|.+.+|.+.... ...+..+|.|+.|.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34555667776664 22 35666777777777777777666665556666777777777665211 23456667777777
Q ss_pred ccCCcccCCC---ChhhhhccCCCeecccc
Q 048153 201 VAHNNLSGKI---PEWTAQFATFSESSYEG 227 (257)
Q Consensus 201 L~~n~l~~~~---~~~~~~~~~L~~l~l~~ 227 (257)
+=+|.+...- -..+..+|+|+.||.+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777665321 12344566677666554
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=7e-06 Score=60.81 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=79.0
Q ss_pred CCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCee
Q 048153 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSES 223 (257)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l 223 (257)
......+++++|.+. ..+.|..++.|.+|.+.+|+|+.+.|.--.-+++|+.|.+.+|.+.... ...++.||+|+.|
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345789999999988 4456788999999999999999776765556789999999999998532 2457789999999
Q ss_pred ccccCcccccCCCCC---cc-Ccccccccc
Q 048153 224 SYEGNHFLCGLPLPI---CR-SPVTMLKAS 249 (257)
Q Consensus 224 ~l~~n~~~~~~~~~~---~~-~~l~~l~~~ 249 (257)
.+-+||..-.--... |- ++++.||-+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehh
Confidence 999999764322222 22 666666654
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=7.3e-08 Score=75.24 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred cccceEEcccCc-cccc-cCCCcCCCCCcCEEeccCCccccCCCc-cccCc-cCCCEEEccCCcc--ccc-CChhhhcCC
Q 048153 122 SYLSGLDLSCNK-LICH-ISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNL-KHIESLDLSYNQL--NGK-IPLQLVELN 194 (257)
Q Consensus 122 ~~L~~L~ls~n~-~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~-~~L~~L~l~~n~l--~~~-~~~~~~~~~ 194 (257)
.+|+.++++++. ++.. ..-.+..++.|..|+++||.+...... ++... ++|..|++++++- ... +..-..++|
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 457777777643 2211 112356677888888888875532222 22222 3777777777641 111 111225678
Q ss_pred CCCEEEccCCccc-CCCChhhhhccCCCeeccccCcccccCCCCC----ccCcccccccccC
Q 048153 195 TLAVFSVAHNNLS-GKIPEWTAQFATFSESSYEGNHFLCGLPLPI----CRSPVTMLKASTT 251 (257)
Q Consensus 195 ~L~~L~L~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~l~~l~~~~~ 251 (257)
+|.+|||+.|... .....++.+++.|+.++++.|-.. .|..+ .-++++-||+.++
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 8888888877644 333456667788888887776321 23222 3366666666543
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.95 E-value=6.2e-06 Score=75.58 Aligned_cols=104 Identities=23% Similarity=0.294 Sum_probs=51.4
Q ss_pred ccceEEcccCc--cccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 123 YLSGLDLSCNK--LICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 123 ~L~~L~ls~n~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
.|++|-+.+|. +.....+.|..++.|+.||+++|.=-+..|..++.+-+|+.|+++++.++ .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555543 22222233455555555555554322245555555555555555555555 4555555555555555
Q ss_pred ccCCcccCCCChhhhhccCCCeecccc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEG 227 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~ 227 (257)
+..+.-...+|.....+++|+++.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 555544433444444455555555443
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=3.3e-06 Score=65.42 Aligned_cols=207 Identities=16% Similarity=0.164 Sum_probs=104.7
Q ss_pred EEEccccccccc----CCccccCcccCcEeeCcCCccc---ccC-------ChhhhCCCCCCeeeccCceecccCCCCCc
Q 048153 2 ILDLSYNRLNGS----IPDLVDGLSQLSHLILAHNNLE---GKV-------PVQLCRLNQLQLLDLSNNNLHGLIPPCFD 67 (257)
Q Consensus 2 ~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~---~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 67 (257)
.+|||+|.|... +...+++-.+|+..+++.-... ..+ .+++-.+|+|+..++++|.+....|..+.
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 478888887732 2334455566777776653222 122 23456788999999999988665554432
Q ss_pred -----CCcccccccCCCCCCCCcchhhhhhhhhh------hcccchhhcccccccccccccc------ccccccceEEcc
Q 048153 68 -----NTTLHESYSNGSSLKPFETSFLVKNIYIY------REKKILEIFEFTTKNIAYTYQG------RVVSYLSGLDLS 130 (257)
Q Consensus 68 -----~~~l~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~------~~~~~L~~L~ls 130 (257)
...+..+..+.+.+..+.+.-..+..... .....++++.+..+.+.+.... .....|+.+.+.
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~ 193 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQ 193 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEee
Confidence 23356666777777776665554433322 2223455555555443322100 111345555555
Q ss_pred cCccccc-----cCCCcCCCCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccCChhh------hcCCC
Q 048153 131 CNKLICH-----ISPQIGNLTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKIPLQL------VELNT 195 (257)
Q Consensus 131 ~n~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~ 195 (257)
.|.+... .-..+..+.+|+.|++..|.++.. ..+++..|+.|+.|.+.+|-++......+ ...|+
T Consensus 194 qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~ 273 (388)
T COG5238 194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN 273 (388)
T ss_pred ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC
Confidence 5554311 001123344566666666655432 22233445555566666555543322221 11355
Q ss_pred CCEEEccCCcccC
Q 048153 196 LAVFSVAHNNLSG 208 (257)
Q Consensus 196 L~~L~L~~n~l~~ 208 (257)
|..|...+|...+
T Consensus 274 l~~L~~~Yne~~~ 286 (388)
T COG5238 274 LMPLPGDYNERRG 286 (388)
T ss_pred ccccccchhhhcC
Confidence 5555555555543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=5.9e-06 Score=64.83 Aligned_cols=38 Identities=29% Similarity=0.276 Sum_probs=18.8
Q ss_pred ccCcEeeCcCCcccccC--ChhhhCCCCCCeeeccCceec
Q 048153 22 SQLSHLILAHNNLEGKV--PVQLCRLNQLQLLDLSNNNLH 59 (257)
Q Consensus 22 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~ 59 (257)
.+++.+|+.+|.++.+. ..-+..+|.|++|++++|.+.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 44555555555555321 222334555555555555554
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.83 E-value=0.00012 Score=51.42 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=23.8
Q ss_pred CccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceeccc
Q 048153 15 PDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61 (257)
Q Consensus 15 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 61 (257)
...|.++.+|+.+.+.. .+.......|...++|+.+.+.++ +..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i 49 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI 49 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc
Confidence 45677777888877774 455455666777777777776664 4433
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=0.00015 Score=60.41 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=20.5
Q ss_pred cCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCc
Q 048153 19 DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNN 56 (257)
Q Consensus 19 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 56 (257)
..+.+++.|++++|.++ .+| .+. ++|++|.+.++
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc 82 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP-VLP--NELTEITIENC 82 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCC
Confidence 34567777777777666 344 221 24777777653
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=9.5e-06 Score=63.72 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=99.2
Q ss_pred EEEccccccccc--CCccccCcccCcEeeCcCCcccccCChhh-hCCCCCCeeeccCceecccCCCC-CcC-Cccccccc
Q 048153 2 ILDLSYNRLNGS--IPDLVDGLSQLSHLILAHNNLEGKVPVQL-CRLNQLQLLDLSNNNLHGLIPPC-FDN-TTLHESYS 76 (257)
Q Consensus 2 ~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~-~~l~~~~~ 76 (257)
.+||.+|.|++. +...+.+||+|+.|+++.|.+... ...+ ....+|++|.+.+..+.-.-... ... +.+.++..
T Consensus 75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 489999999943 456778999999999999999732 2233 35668999999888764211111 111 11222222
Q ss_pred CCCCCCCCcc---hh--hhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccccc-CCCcCCCCCcCE
Q 048153 77 NGSSLKPFET---SF--LVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHI-SPQIGNLTRIQT 150 (257)
Q Consensus 77 ~~~~l~~~~~---~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~-~~~~~~l~~L~~ 150 (257)
+.+++..+.. .. ......-..........+...+.+ +..++++..+.++.|.+.... ...+...+.+.-
T Consensus 154 S~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l-----~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 154 SDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL-----SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred ccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH-----HhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 2232211100 00 000000111111111111111111 122556666666666554221 123444555556
Q ss_pred EeccCCccccC-CCccccCccCCCEEEccCCcccccCC----h--hhhcCCCCCEEEcc
Q 048153 151 LNLSHNDLIGT-IPSTFSNLKHIESLDLSYNQLNGKIP----L--QLVELNTLAVFSVA 202 (257)
Q Consensus 151 L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~----~--~~~~~~~L~~L~L~ 202 (257)
|+++.++|..+ ..+++.+++.|.-|.++++-+.+.+- . .++++++++.|+=+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 77777776643 24456677777777777776543221 1 23556666666544
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=1e-05 Score=62.79 Aligned_cols=188 Identities=16% Similarity=0.107 Sum_probs=121.1
Q ss_pred cccCcccCcEeeCcCCcccccCChhh----hCCCCCCeeeccCceecccCCCCCc--------------CCcccccccCC
Q 048153 17 LVDGLSQLSHLILAHNNLEGKVPVQL----CRLNQLQLLDLSNNNLHGLIPPCFD--------------NTTLHESYSNG 78 (257)
Q Consensus 17 ~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~--------------~~~l~~~~~~~ 78 (257)
++..||+|+..++++|-+....|..+ +.-+.|.+|.+.+|.+...-...++ .+.+..++-..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45688999999999999987666554 4567899999999987422211111 12233333334
Q ss_pred CCCCCCcchhhhhhhhhhhcccchhhccccccccccc-------cccccccccceEEcccCccc----cccCCCcCCCCC
Q 048153 79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYT-------YQGRVVSYLSGLDLSCNKLI----CHISPQIGNLTR 147 (257)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~L~~L~ls~n~~~----~~~~~~~~~l~~ 147 (257)
+++...+........... ..+..+.+..+.+... .....+.+|+.|++..|.++ ..+...++.++.
T Consensus 167 NRlengs~~~~a~~l~sh---~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 167 NRLENGSKELSAALLESH---ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred chhccCcHHHHHHHHHhh---cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 444444443333333333 4455566666665543 22344778999999999886 234456778889
Q ss_pred cCEEeccCCccccCCCccc------cCccCCCEEEccCCcccccC------Chhh-hcCCCCCEEEccCCccc
Q 048153 148 IQTLNLSHNDLIGTIPSTF------SNLKHIESLDLSYNQLNGKI------PLQL-VELNTLAVFSVAHNNLS 207 (257)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~------~~~~~L~~L~l~~n~l~~~~------~~~~-~~~~~L~~L~L~~n~l~ 207 (257)
|+.|.+..|.++....+++ ...+.|..|...+|.+.+.. +... ..+|-|..|.+.||++.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 9999999999886554443 13478899999999765421 1111 34677778888888887
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.50 E-value=0.00068 Score=47.46 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=19.8
Q ss_pred CCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153 140 PQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA 202 (257)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 202 (257)
..|..++.++.+.+.. .+.......|..++.++.+++..+ +.......+.+. .++.+.+.
T Consensus 52 ~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 52 NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 3444444444444433 222233333444444444444333 222223333333 44444444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00071 Score=56.51 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=23.7
Q ss_pred cchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153 100 KILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN 156 (257)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (257)
+.+..+.+..+.+...+ ..+.+|++|.++++.-...+|+.+. ++|++|.+++|
T Consensus 52 ~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 33444444444333332 2344566666655332223343332 35666666655
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=0.00021 Score=55.16 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=66.2
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCC--ccccCCCccccCccCCCEEEccCCccccc-CChhhhcCCCCC
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN--DLIGTIPSTFSNLKHIESLDLSYNQLNGK-IPLQLVELNTLA 197 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~ 197 (257)
...++.+.+.+..+++. ..|..+++|++|.++.| .+++-..-....++.|+++++++|++... -...+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 45677777777776633 36777888999999988 44444444445568899999999988631 112345567788
Q ss_pred EEEccCCcccCCCC---hhhhhccCCCeec
Q 048153 198 VFSVAHNNLSGKIP---EWTAQFATFSESS 224 (257)
Q Consensus 198 ~L~L~~n~l~~~~~---~~~~~~~~L~~l~ 224 (257)
.|++..|.....-. ..+..+++|+.++
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 88888887765222 1233456666665
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=0.00023 Score=54.96 Aligned_cols=61 Identities=28% Similarity=0.346 Sum_probs=31.0
Q ss_pred ccccceEEcccC--ccccccCCCcCCCCCcCEEeccCCccccCCCccc---cCccCCCEEEccCCccc
Q 048153 121 VSYLSGLDLSCN--KLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTF---SNLKHIESLDLSYNQLN 183 (257)
Q Consensus 121 ~~~L~~L~ls~n--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~ 183 (257)
+++|++|.++.| +..+-++.....+++|+++++++|++.. +.++ ..+..|.+|++.+|..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 455666666666 4443333333444666666666666551 2222 23344556666665544
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.00017 Score=64.75 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=57.7
Q ss_pred ccccccceEEcccCccccc-cCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccc-cCChhhhcCCCC
Q 048153 119 RVVSYLSGLDLSCNKLICH-ISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG-KIPLQLVELNTL 196 (257)
Q Consensus 119 ~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L 196 (257)
..+|.|++|.+++-.+... ......++++|..||+++.+++.. ..++.+++|+.|.+++=.+.. .....+-++++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 4466677777766444211 122334566677777777666633 344555666666666544432 111233456666
Q ss_pred CEEEccCCcccCCCChhh-------hhccCCCeeccccCcccc
Q 048153 197 AVFSVAHNNLSGKIPEWT-------AQFATFSESSYEGNHFLC 232 (257)
Q Consensus 197 ~~L~L~~n~l~~~~~~~~-------~~~~~L~~l~l~~n~~~~ 232 (257)
+.||+|..+..+.. ..+ ..+|+|+.||.+++.+..
T Consensus 223 ~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 223 RVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred Ceeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhH
Confidence 66666665544221 111 135666666666655443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00014 Score=65.16 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=90.3
Q ss_pred ccccceEEcccCccccccCCC----cCCCCCcCEEeccCCccccC-CCccccCccCCCEEEccCCcccccCChhhhcCCC
Q 048153 121 VSYLSGLDLSCNKLICHISPQ----IGNLTRIQTLNLSHNDLIGT-IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNT 195 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 195 (257)
-.+|++|+++|...- ...| -..+|.|++|.+++-.+... ......+.++|..||++++.++.. ..+.++++
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 356999999885532 1122 24478999999998765422 233446788999999999999843 67888999
Q ss_pred CCEEEccCCcccC-CCChhhhhccCCCeeccccCcccccC--CCCC--cc---CcccccccccCCc
Q 048153 196 LAVFSVAHNNLSG-KIPEWTAQFATFSESSYEGNHFLCGL--PLPI--CR---SPVTMLKASTTNK 253 (257)
Q Consensus 196 L~~L~L~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~--~~---~~l~~l~~~~~~~ 253 (257)
|+.|.+++=.+.. ..-..+-.+.+|+.||++......+. ..-. |. +-|+.||.|+++.
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 9999999988875 33346667899999999987655432 1111 44 5666777776653
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=2.4e-05 Score=60.93 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=36.7
Q ss_pred cCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCeeccc
Q 048153 148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSESSYE 226 (257)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~ 226 (257)
.++|++-+|.++++ .....|+.|+.|.|+-|+|+.. ..+.++.+|+.|.|+.|.|.+.. ...+.++|+|+.|++.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34444445544422 1223455555555555555421 22444555555555555554221 1233445555555555
Q ss_pred cCc
Q 048153 227 GNH 229 (257)
Q Consensus 227 ~n~ 229 (257)
.||
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 555
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00013 Score=57.04 Aligned_cols=81 Identities=20% Similarity=0.124 Sum_probs=42.6
Q ss_pred chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC-CccccCccCCCEEEccC
Q 048153 101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI-PSTFSNLKHIESLDLSY 179 (257)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~ 179 (257)
+...++++.+++........++.|+.|.+|-|++++.- .+..|++|+.|+|..|.|.... ...+.++++|++|.+..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 33445555555555555555666666666666665332 2455666666666666555321 11234555555555555
Q ss_pred Cccc
Q 048153 180 NQLN 183 (257)
Q Consensus 180 n~l~ 183 (257)
|--.
T Consensus 98 NPCc 101 (388)
T KOG2123|consen 98 NPCC 101 (388)
T ss_pred CCcc
Confidence 5433
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0036 Score=29.02 Aligned_cols=12 Identities=50% Similarity=0.484 Sum_probs=6.0
Q ss_pred CcEeeCcCCccc
Q 048153 24 LSHLILAHNNLE 35 (257)
Q Consensus 24 L~~L~l~~n~l~ 35 (257)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0033 Score=29.16 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=5.6
Q ss_pred CCEEEccCCccc
Q 048153 196 LAVFSVAHNNLS 207 (257)
Q Consensus 196 L~~L~L~~n~l~ 207 (257)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0033 Score=46.95 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=59.1
Q ss_pred CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCc-ccccCChhhh-cCCCCCEEEccCCc-ccCCCChhhhhccC
Q 048153 143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLV-ELNTLAVFSVAHNN-LSGKIPEWTAQFAT 219 (257)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~~~ 219 (257)
..-..++.++-+++.|..+.-+.+..++.++.|.+.+|. +.+.-...++ -.++|+.|++++|. |++.-...+..+++
T Consensus 98 ~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 98 ADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred CCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 334457888888888777777777788888888888874 3322222222 24788888888775 55444566677888
Q ss_pred CCeeccccCcc
Q 048153 220 FSESSYEGNHF 230 (257)
Q Consensus 220 L~~l~l~~n~~ 230 (257)
|+.+.+.+-+.
T Consensus 178 Lr~L~l~~l~~ 188 (221)
T KOG3864|consen 178 LRRLHLYDLPY 188 (221)
T ss_pred hHHHHhcCchh
Confidence 88888777543
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.82 E-value=0.02 Score=24.64 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=4.8
Q ss_pred CCCEEEccCCccc
Q 048153 195 TLAVFSVAHNNLS 207 (257)
Q Consensus 195 ~L~~L~L~~n~l~ 207 (257)
+|+.|++++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555443
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.30 E-value=0.072 Score=25.59 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=6.3
Q ss_pred CcCEEeccCCcccc
Q 048153 147 RIQTLNLSHNDLIG 160 (257)
Q Consensus 147 ~L~~L~l~~n~l~~ 160 (257)
+|+.|++++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.30 E-value=0.072 Score=25.59 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=6.3
Q ss_pred CcCEEeccCCcccc
Q 048153 147 RIQTLNLSHNDLIG 160 (257)
Q Consensus 147 ~L~~L~l~~n~l~~ 160 (257)
+|+.|++++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.92 E-value=0.083 Score=25.36 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=8.1
Q ss_pred ccCcEeeCcCCccc
Q 048153 22 SQLSHLILAHNNLE 35 (257)
Q Consensus 22 ~~L~~L~l~~n~l~ 35 (257)
++|++|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.92 E-value=0.083 Score=25.36 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=8.1
Q ss_pred ccCcEeeCcCCccc
Q 048153 22 SQLSHLILAHNNLE 35 (257)
Q Consensus 22 ~~L~~L~l~~n~l~ 35 (257)
++|++|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.71 E-value=0.04 Score=47.63 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=14.6
Q ss_pred cCCCEEEccCCc-ccccCChhhhc-CCCCCEEEccCCc
Q 048153 170 KHIESLDLSYNQ-LNGKIPLQLVE-LNTLAVFSVAHNN 205 (257)
Q Consensus 170 ~~L~~L~l~~n~-l~~~~~~~~~~-~~~L~~L~L~~n~ 205 (257)
..|+.++++++. +++.....+.. +++|+.|.+.++.
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 444444444444 33222222221 3444444444443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.31 E-value=0.0032 Score=48.20 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=51.1
Q ss_pred CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCe
Q 048153 143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSE 222 (257)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 222 (257)
......+.||++.|.+. .....|..+..+..++++.|++. ..|..+.....+.++++..|..+ ..|-+....+.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33445566666666555 23444555556666666666665 55665655555666666666665 55666666666666
Q ss_pred eccccCccc
Q 048153 223 SSYEGNHFL 231 (257)
Q Consensus 223 l~l~~n~~~ 231 (257)
.+..+|++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666643
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.02 E-value=0.035 Score=26.17 Aligned_cols=13 Identities=54% Similarity=0.830 Sum_probs=5.2
Q ss_pred CCCEEEccCCccc
Q 048153 171 HIESLDLSYNQLN 183 (257)
Q Consensus 171 ~L~~L~l~~n~l~ 183 (257)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.97 E-value=0.059 Score=46.58 Aligned_cols=110 Identities=16% Similarity=0.108 Sum_probs=72.7
Q ss_pred ccccccceEEcccC-cccccc----CCCcCCCCCcCEEeccCCc-cccCCCccccC-ccCCCEEEccCCc-ccccCChhh
Q 048153 119 RVVSYLSGLDLSCN-KLICHI----SPQIGNLTRIQTLNLSHND-LIGTIPSTFSN-LKHIESLDLSYNQ-LNGKIPLQL 190 (257)
Q Consensus 119 ~~~~~L~~L~ls~n-~~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~~L~~L~l~~n~-l~~~~~~~~ 190 (257)
...+.|+.|+++++ ...... ......+.+|+.++++++. ++...-..+.. ++.|+.|.+.++. +++.....+
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 34678999999873 211111 1234556889999999988 77655555543 7899999988887 665444433
Q ss_pred -hcCCCCCEEEccCCcccCC--CChhhhhccCCCeeccccC
Q 048153 191 -VELNTLAVFSVAHNNLSGK--IPEWTAQFATFSESSYEGN 228 (257)
Q Consensus 191 -~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~l~l~~n 228 (257)
..++.|++|+++++..... +......+++++.+.+.+.
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 5678899999999887522 3333445777776655444
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.73 E-value=0.13 Score=44.48 Aligned_cols=68 Identities=22% Similarity=0.125 Sum_probs=35.4
Q ss_pred CccCCCEEEccCCcccccC--ChhhhcCCCCCEEEccCCcccCCCChhhhh--ccCCCeeccccCcccccCC
Q 048153 168 NLKHIESLDLSYNQLNGKI--PLQLVELNTLAVFSVAHNNLSGKIPEWTAQ--FATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 168 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--~~~L~~l~l~~n~~~~~~~ 235 (257)
..+.+..+++++|++.... ...-...|.|+.|+|++|...-....++.. ...|+++.+.|||+...+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 3456666777777664321 111233577777777777222112222222 3456777777777655433
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.13 E-value=0.0028 Score=54.57 Aligned_cols=90 Identities=23% Similarity=0.232 Sum_probs=55.3
Q ss_pred CCCCcCEEeccCCccccCC----CccccCccC-CCEEEccCCcccccC----ChhhhcC-CCCCEEEccCCcccCCCC--
Q 048153 144 NLTRIQTLNLSHNDLIGTI----PSTFSNLKH-IESLDLSYNQLNGKI----PLQLVEL-NTLAVFSVAHNNLSGKIP-- 211 (257)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~L~~n~l~~~~~-- 211 (257)
....+++|.+++|.++... ...+...++ +..+++..|++.+.. ...+... +.+++++++.|.+.+.-.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 4667788888887766321 122333344 566888888776431 1223333 566888888888875433
Q ss_pred --hhhhhccCCCeeccccCccccc
Q 048153 212 --EWTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 212 --~~~~~~~~L~~l~l~~n~~~~~ 233 (257)
..+..++.++++.++.|++..+
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccH
Confidence 3344567888888888876643
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=0.04 Score=41.33 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=58.4
Q ss_pred ccceEEcccCccccccCCCcCCCCCcCEEeccCCc-cccCCCcccc-CccCCCEEEccCC-cccccCChhhhcCCCCCEE
Q 048153 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND-LIGTIPSTFS-NLKHIESLDLSYN-QLNGKIPLQLVELNTLAVF 199 (257)
Q Consensus 123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L 199 (257)
.++.++-++..+.++--+.+..++.++.|.+.+|+ +...--+-++ ..++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47778888877765544566777888888888875 4432222222 3469999999988 4886667778888999988
Q ss_pred EccCCc
Q 048153 200 SVAHNN 205 (257)
Q Consensus 200 ~L~~n~ 205 (257)
.+.+=.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 887643
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.15 E-value=0.0087 Score=45.89 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=68.8
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
....+.||++.|.+- .+...|+-++.+..++++.|.+. ..|..+.....+..+++..|..+ ..|.++...++++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 455677888888875 44556777888999999999888 67777777788888888888887 7888888899999999
Q ss_pred ccCCcccC
Q 048153 201 VAHNNLSG 208 (257)
Q Consensus 201 L~~n~l~~ 208 (257)
+.+|.+..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 99988663
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.64 E-value=0.83 Score=22.00 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=7.0
Q ss_pred CCCEEEccCCccc
Q 048153 171 HIESLDLSYNQLN 183 (257)
Q Consensus 171 ~L~~L~l~~n~l~ 183 (257)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.70 E-value=1.1 Score=21.56 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=9.9
Q ss_pred CCCCeeeccCceecc
Q 048153 46 NQLQLLDLSNNNLHG 60 (257)
Q Consensus 46 ~~L~~L~l~~n~l~~ 60 (257)
.+|+.|+++.|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 466777777777653
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.53 E-value=1.3 Score=21.68 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=6.0
Q ss_pred CCCEEEccCCccc
Q 048153 171 HIESLDLSYNQLN 183 (257)
Q Consensus 171 ~L~~L~l~~n~l~ 183 (257)
+|+.|++++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=68.59 E-value=2.4 Score=35.79 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=57.7
Q ss_pred ccccceEEcccCccccccC-C-CcCCCCCcCEEeccCCccc--cCCCccccCccCCCEEEccCCccc-ccC----Chhhh
Q 048153 121 VSYLSGLDLSCNKLICHIS-P-QIGNLTRIQTLNLSHNDLI--GTIPSTFSNLKHIESLDLSYNQLN-GKI----PLQLV 191 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~-~-~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~-~~~----~~~~~ 191 (257)
..+|+.+.+.++..-+..- . .=.++..|+.+++..+... +.....-..++.|+.+.++++... +.. ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 3556666666654211100 0 0123456777777666422 112223346677788887777532 211 11113
Q ss_pred cCCCCCEEEccCCcccC-CCChhhhhccCCCeeccccCc
Q 048153 192 ELNTLAVFSVAHNNLSG-KIPEWTAQFATFSESSYEGNH 229 (257)
Q Consensus 192 ~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~l~l~~n~ 229 (257)
.+..|..+.++++.... ...+.+..+++|+.+++.++.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34667777777776543 334455667778777777653
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.38 E-value=3.3 Score=36.23 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCCCcCEEeccCCccccC--CCccccCccCCCEEEccCC--cccccC-ChhhhcCCCCCEEEccCCcccCCC--C-hhhh
Q 048153 144 NLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYN--QLNGKI-PLQLVELNTLAVFSVAHNNLSGKI--P-EWTA 215 (257)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n--~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~--~-~~~~ 215 (257)
+.+.+..+.+++|.+-.. ....-...|.|+.|+|++| .+.... ...+ ....|++|-+.||.+-+.. + +.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHHH
Confidence 455677778888876532 1222245678899999998 443211 1122 2356788888999886432 1 2222
Q ss_pred ----hccCCCeec
Q 048153 216 ----QFATFSESS 224 (257)
Q Consensus 216 ----~~~~L~~l~ 224 (257)
.+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 467777664
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=59.22 E-value=11 Score=39.82 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=19.0
Q ss_pred eccCCccccCCCccccCccCCCEEEccCCccc
Q 048153 152 NLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183 (257)
Q Consensus 152 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 183 (257)
+|++|.|+.+.+..|..+++|+.|+|++|-+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35566666555556666666666666666443
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.49 E-value=7.7 Score=18.30 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=5.9
Q ss_pred cCCCeeccccCc
Q 048153 218 ATFSESSYEGNH 229 (257)
Q Consensus 218 ~~L~~l~l~~n~ 229 (257)
++|+.|++++++
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 345555555543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=47.36 E-value=24 Score=30.61 Aligned_cols=106 Identities=17% Similarity=0.104 Sum_probs=63.4
Q ss_pred CCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhh---hcCCCCCEEEccCCcccCCCChhhhhc---c
Q 048153 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQL---VELNTLAVFSVAHNNLSGKIPEWTAQF---A 218 (257)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~---~ 218 (257)
.+.++.++++.|.+....|-.+..... -++++.|+++......+ ..-..+..++++.|...+.+|..+..+ -
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 456788899999888776666544322 27777777664332222 112467899999999998888776544 2
Q ss_pred CCCeeccccCcccccCCCC----CccCcccccccccCC
Q 048153 219 TFSESSYEGNHFLCGLPLP----ICRSPVTMLKASTTN 252 (257)
Q Consensus 219 ~L~~l~l~~n~~~~~~~~~----~~~~~l~~l~~~~~~ 252 (257)
.++.++.++.-+.-+--.+ .|-+.++..+++.|+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 4455555544322211111 155666666666654
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.05 E-value=10 Score=39.92 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=29.1
Q ss_pred EcccccccccCCccccCcccCcEeeCcCCccc
Q 048153 4 DLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE 35 (257)
Q Consensus 4 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 35 (257)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888889999999999999998776
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=42.65 E-value=11 Score=32.00 Aligned_cols=111 Identities=18% Similarity=0.098 Sum_probs=57.4
Q ss_pred cccceEEcccCcccccc--CCCcCCCCCcCEEeccCCc-cccCCCccc-cCccCCCEEEccCCcccc--cCChhhhcCCC
Q 048153 122 SYLSGLDLSCNKLICHI--SPQIGNLTRIQTLNLSHND-LIGTIPSTF-SNLKHIESLDLSYNQLNG--KIPLQLVELNT 195 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~ 195 (257)
..|+.+..+++...+.. -.--++..+|+.+.+..++ ++..-...+ .++++|+.+++-.+.... .+...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 34566666554421110 0112455677777777775 443333333 255677777777764321 12222245677
Q ss_pred CCEEEccCCcccCCC-----ChhhhhccCCCeeccccCcccc
Q 048153 196 LAVFSVAHNNLSGKI-----PEWTAQFATFSESSYEGNHFLC 232 (257)
Q Consensus 196 L~~L~L~~n~l~~~~-----~~~~~~~~~L~~l~l~~n~~~~ 232 (257)
|+.+.+++|...... ...-.....|..+.++++|...
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 888888877654222 1111234566677777766543
Done!