Query 048153
Match_columns 257
No_of_seqs 139 out of 2142
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-29 8.3E-34 203.8 14.9 243 2-253 54-303 (313)
2 1ogq_A PGIP-2, polygalacturona 100.0 3E-29 1E-33 203.2 15.0 228 1-239 79-312 (313)
3 1ozn_A Reticulon 4 receptor; N 100.0 7.1E-29 2.4E-33 198.5 16.1 235 3-247 16-254 (285)
4 3rgz_A Protein brassinosteroid 100.0 1.6E-28 5.6E-33 221.0 20.2 246 2-254 398-717 (768)
5 1xku_A Decorin; proteoglycan, 100.0 1.3E-27 4.3E-32 195.1 20.5 247 1-251 55-329 (330)
6 2o6q_A Variable lymphocyte rec 100.0 9.9E-28 3.4E-32 190.4 18.9 204 1-236 19-223 (270)
7 3rgz_A Protein brassinosteroid 100.0 9E-28 3.1E-32 216.1 20.8 244 1-251 421-737 (768)
8 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-27 5.3E-32 194.8 18.7 248 1-253 57-332 (332)
9 3zyi_A Leucine-rich repeat-con 100.0 1.7E-27 5.8E-32 202.3 19.1 228 1-237 78-309 (452)
10 3zyj_A Leucine-rich repeat-con 100.0 2.7E-27 9.3E-32 200.4 19.0 228 1-237 67-298 (440)
11 3v47_A TOLL-like receptor 5B a 100.0 1.9E-27 6.4E-32 202.1 17.6 114 122-235 299-412 (455)
12 3v47_A TOLL-like receptor 5B a 99.9 4.5E-27 1.5E-31 199.7 17.4 255 1-255 82-409 (455)
13 4fcg_A Uncharacterized protein 99.9 4.1E-27 1.4E-31 191.8 16.0 225 1-251 84-311 (328)
14 2z66_A Variable lymphocyte rec 99.9 6.4E-27 2.2E-31 189.0 16.2 231 1-237 31-267 (306)
15 2z62_A TOLL-like receptor 4, v 99.9 1.6E-26 5.4E-31 184.0 16.1 207 1-237 31-243 (276)
16 2id5_A Lingo-1, leucine rich r 99.9 9.5E-27 3.3E-31 199.0 15.3 236 1-236 59-338 (477)
17 3m19_A Variable lymphocyte rec 99.9 6.9E-26 2.4E-30 177.8 18.6 178 1-233 17-194 (251)
18 3rfs_A Internalin B, repeat mo 99.9 4E-26 1.4E-30 181.3 17.2 180 1-236 44-223 (272)
19 3o6n_A APL1; leucine-rich repe 99.9 1.1E-25 3.8E-30 187.7 19.3 246 1-253 72-351 (390)
20 3t6q_A CD180 antigen; protein- 99.9 6.2E-26 2.1E-30 199.3 17.9 252 1-253 36-362 (606)
21 1p9a_G Platelet glycoprotein I 99.9 1.7E-25 5.8E-30 179.2 18.7 200 1-235 13-212 (290)
22 2z66_A Variable lymphocyte rec 99.9 5E-26 1.7E-30 183.7 15.1 238 1-246 55-302 (306)
23 4eco_A Uncharacterized protein 99.9 1.1E-25 3.6E-30 198.7 18.4 248 1-255 308-601 (636)
24 2o6q_A Variable lymphocyte rec 99.9 4.6E-25 1.6E-29 175.0 20.1 200 22-253 16-217 (270)
25 2id5_A Lingo-1, leucine rich r 99.9 6.4E-26 2.2E-30 193.8 16.2 225 1-255 35-262 (477)
26 2z80_A TOLL-like receptor 2, v 99.9 6.7E-27 2.3E-31 192.5 9.8 228 1-235 55-318 (353)
27 3oja_B Anopheles plasmodium-re 99.9 2.5E-25 8.4E-30 195.1 19.4 246 1-253 78-357 (597)
28 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-25 1.6E-29 176.3 18.0 220 25-254 14-238 (285)
29 1ziw_A TOLL-like receptor 3; i 99.9 6.3E-25 2.2E-29 195.3 20.8 231 1-236 384-627 (680)
30 1xku_A Decorin; proteoglycan, 99.9 2.1E-24 7.3E-29 176.0 21.2 247 1-254 34-306 (330)
31 4fcg_A Uncharacterized protein 99.9 3.6E-25 1.2E-29 180.4 16.4 207 1-231 107-314 (328)
32 2z7x_B TOLL-like receptor 1, v 99.9 3.5E-25 1.2E-29 191.2 17.0 80 1-82 24-103 (520)
33 4eco_A Uncharacterized protein 99.9 9.3E-26 3.2E-30 199.0 13.0 244 1-253 209-525 (636)
34 3oja_A Leucine-rich immune mol 99.9 2E-25 6.9E-30 191.0 14.5 215 1-235 37-254 (487)
35 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-24 7.7E-29 176.0 19.9 247 1-254 36-307 (332)
36 3t6q_A CD180 antigen; protein- 99.9 1.3E-24 4.5E-29 190.9 19.6 252 2-255 258-537 (606)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-24 3.6E-29 189.9 18.6 81 1-83 55-135 (562)
38 4ecn_A Leucine-rich repeat pro 99.9 1.3E-24 4.5E-29 196.0 19.3 246 1-254 551-840 (876)
39 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-25 8.5E-30 180.5 13.1 214 1-234 37-253 (317)
40 3o6n_A APL1; leucine-rich repe 99.9 3.9E-24 1.3E-28 178.3 19.1 242 1-253 48-330 (390)
41 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-24 3.6E-29 191.4 15.7 207 1-238 353-565 (606)
42 3oja_B Anopheles plasmodium-re 99.9 3.5E-24 1.2E-28 187.9 18.7 242 1-253 54-336 (597)
43 2xwt_C Thyrotropin receptor; s 99.9 6.8E-25 2.3E-29 171.0 12.7 194 1-251 34-236 (239)
44 3zyi_A Leucine-rich repeat-con 99.9 1.7E-23 5.9E-28 177.6 20.9 241 2-254 58-303 (452)
45 4fmz_A Internalin; leucine ric 99.9 9.3E-24 3.2E-28 173.3 18.5 243 1-254 91-346 (347)
46 3vq2_A TLR4, TOLL-like recepto 99.9 2E-24 6.8E-29 189.7 14.8 223 1-255 331-559 (606)
47 3rfs_A Internalin B, repeat mo 99.9 8.1E-24 2.8E-28 168.0 16.2 179 1-240 66-244 (272)
48 1wwl_A Monocyte differentiatio 99.9 9.5E-25 3.3E-29 176.7 10.4 222 2-253 67-308 (312)
49 2z62_A TOLL-like receptor 4, v 99.9 2.8E-23 9.6E-28 165.2 18.7 218 3-254 12-237 (276)
50 3m19_A Variable lymphocyte rec 99.9 1.5E-23 5.3E-28 164.4 16.8 157 1-209 38-194 (251)
51 3zyj_A Leucine-rich repeat-con 99.9 3.4E-23 1.2E-27 175.3 19.7 240 2-253 47-291 (440)
52 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-23 4.5E-28 190.9 18.2 127 122-252 266-392 (844)
53 2z80_A TOLL-like receptor 2, v 99.9 5.6E-24 1.9E-28 175.1 14.4 242 2-254 35-314 (353)
54 4g8a_A TOLL-like receptor 4; l 99.9 4E-23 1.4E-27 182.0 20.3 100 137-236 485-585 (635)
55 1ziw_A TOLL-like receptor 3; i 99.9 4.5E-23 1.5E-27 183.4 20.8 132 124-255 250-395 (680)
56 2z63_A TOLL-like receptor 4, v 99.9 5.5E-24 1.9E-28 185.5 14.4 206 1-240 328-540 (570)
57 2xot_A Amphoterin-induced prot 99.9 9.3E-24 3.2E-28 174.2 14.9 180 1-235 21-206 (361)
58 1wwl_A Monocyte differentiatio 99.9 5.4E-25 1.9E-29 178.1 7.1 223 2-255 47-288 (312)
59 4ecn_A Leucine-rich repeat pro 99.9 5.5E-24 1.9E-28 192.0 13.5 222 1-231 451-710 (876)
60 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-23 5.9E-28 180.6 15.5 82 1-85 3-85 (520)
61 3j0a_A TOLL-like receptor 5; m 99.9 7.5E-23 2.6E-27 185.9 19.6 255 1-255 27-376 (844)
62 4fmz_A Internalin; leucine ric 99.9 7.5E-23 2.6E-27 167.9 17.5 242 1-255 69-325 (347)
63 2v9t_B SLIT homolog 2 protein 99.9 6.2E-23 2.1E-27 157.8 15.0 157 25-236 14-170 (220)
64 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.4E-27 161.9 16.9 203 17-254 5-208 (290)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4.2E-27 176.9 16.8 250 1-254 34-463 (562)
66 4glp_A Monocyte differentiatio 99.9 2.5E-23 8.5E-28 168.2 11.5 195 1-252 94-305 (310)
67 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-23 4.4E-28 182.5 10.2 131 121-252 122-262 (549)
68 1o6v_A Internalin A; bacterial 99.9 1.2E-22 4.2E-27 173.0 16.0 125 121-254 220-344 (466)
69 2v70_A SLIT-2, SLIT homolog 2 99.9 1.4E-22 4.7E-27 155.9 14.4 115 121-235 56-170 (220)
70 2z63_A TOLL-like receptor 4, v 99.9 1.2E-22 4.1E-27 177.0 14.9 223 1-254 31-317 (570)
71 3bz5_A Internalin-J, INLJ; leu 99.9 9.6E-22 3.3E-26 166.9 19.3 235 1-252 45-297 (457)
72 3e6j_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 154.0 15.5 114 121-235 63-176 (229)
73 1o6v_A Internalin A; bacterial 99.9 7.9E-22 2.7E-26 168.0 18.1 145 101-254 222-366 (466)
74 1h6u_A Internalin H; cell adhe 99.9 6.2E-22 2.1E-26 159.8 15.6 188 1-232 44-231 (308)
75 2o6s_A Variable lymphocyte rec 99.9 1.1E-21 3.9E-26 149.5 16.3 176 2-239 11-186 (208)
76 2v9t_B SLIT homolog 2 protein 99.9 8.5E-22 2.9E-26 151.4 15.0 192 1-249 14-206 (220)
77 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-22 5.5E-27 175.5 12.0 82 1-82 29-111 (549)
78 4g8a_A TOLL-like receptor 4; l 99.9 9.1E-22 3.1E-26 173.3 16.7 241 1-249 374-624 (635)
79 3oja_A Leucine-rich immune mol 99.9 1.7E-22 5.7E-27 172.9 10.8 217 1-237 61-288 (487)
80 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-23 1.8E-27 166.8 7.2 234 3-254 15-250 (317)
81 2o6s_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 149.3 14.3 157 24-235 9-165 (208)
82 2xwt_C Thyrotropin receptor; s 99.9 8E-22 2.7E-26 153.5 12.3 171 1-229 58-237 (239)
83 2v70_A SLIT-2, SLIT homolog 2 99.9 1.2E-21 4.1E-26 150.6 13.1 191 1-249 14-207 (220)
84 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-20 4.1E-25 160.1 20.5 198 11-232 31-247 (457)
85 1jl5_A Outer protein YOPM; leu 99.9 2.9E-21 1E-25 163.8 11.8 224 1-253 14-269 (454)
86 1h6t_A Internalin B; cell adhe 99.9 1.3E-20 4.3E-25 150.9 14.3 104 121-232 111-214 (291)
87 1h6u_A Internalin H; cell adhe 99.8 1.3E-20 4.6E-25 152.0 14.3 204 6-254 27-230 (308)
88 3e6j_A Variable lymphocyte rec 99.8 4.2E-20 1.4E-24 142.9 16.0 155 1-211 22-176 (229)
89 4glp_A Monocyte differentiatio 99.8 2.8E-21 9.5E-26 156.2 9.7 132 121-255 144-286 (310)
90 3goz_A Leucine-rich repeat-con 99.8 4.6E-22 1.6E-26 164.2 3.9 250 2-254 2-297 (362)
91 2xot_A Amphoterin-induced prot 99.8 1.7E-20 5.7E-25 154.8 12.0 156 1-208 42-203 (361)
92 1m9s_A Internalin B; cell inva 99.8 1.3E-19 4.4E-24 158.3 16.1 105 121-233 108-212 (605)
93 4ezg_A Putative uncharacterize 99.8 5.5E-20 1.9E-24 138.9 11.9 154 18-231 40-194 (197)
94 2ca6_A RAN GTPase-activating p 99.8 2.3E-21 7.8E-26 161.3 3.9 232 1-235 35-320 (386)
95 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.1E-24 156.0 15.4 180 1-236 62-248 (571)
96 3g06_A SSPH2 (leucine-rich rep 99.8 6.2E-19 2.1E-23 154.3 18.6 75 170-253 221-296 (622)
97 2ca6_A RAN GTPase-activating p 99.8 7.1E-22 2.4E-26 164.4 -0.1 239 13-254 23-316 (386)
98 2ast_B S-phase kinase-associat 99.8 3.6E-21 1.2E-25 157.1 4.0 129 121-254 167-306 (336)
99 1xeu_A Internalin C; cellular 99.8 6.8E-20 2.3E-24 144.5 11.1 164 3-233 24-187 (263)
100 1jl5_A Outer protein YOPM; leu 99.8 1.6E-18 5.5E-23 147.0 19.8 120 122-253 257-408 (454)
101 3g06_A SSPH2 (leucine-rich rep 99.8 6.3E-19 2.2E-23 154.2 17.6 103 121-236 200-302 (622)
102 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.4E-24 144.6 12.7 182 5-253 31-212 (291)
103 2ast_B S-phase kinase-associat 99.8 3.8E-21 1.3E-25 157.0 2.9 230 1-241 73-316 (336)
104 1w8a_A SLIT protein; signaling 99.8 2E-19 6.8E-24 135.3 11.5 114 123-236 30-144 (192)
105 4ezg_A Putative uncharacterize 99.8 3E-19 1E-23 134.9 12.5 148 1-208 47-195 (197)
106 4ay9_X Follicle-stimulating ho 99.8 4.6E-19 1.6E-23 145.5 13.3 236 2-251 13-256 (350)
107 2wfh_A SLIT homolog 2 protein 99.8 5.2E-19 1.8E-23 133.0 12.2 115 121-236 30-144 (193)
108 1w8a_A SLIT protein; signaling 99.8 7.1E-19 2.4E-23 132.2 12.2 125 121-246 53-177 (192)
109 3goz_A Leucine-rich repeat-con 99.8 1E-20 3.4E-25 156.2 2.1 231 1-233 25-299 (362)
110 1dce_A Protein (RAB geranylger 99.8 3.1E-21 1.1E-25 167.5 -1.1 205 19-247 346-566 (567)
111 1m9s_A Internalin B; cell inva 99.8 5.6E-19 1.9E-23 154.3 11.8 183 4-253 27-209 (605)
112 1z7x_W Ribonuclease inhibitor; 99.8 2.6E-21 8.7E-26 164.5 -3.7 60 1-60 88-156 (461)
113 4ay9_X Follicle-stimulating ho 99.8 1.4E-18 4.8E-23 142.6 12.6 215 25-252 12-234 (350)
114 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-21 7.7E-26 164.9 -4.3 109 145-253 255-382 (461)
115 2o6r_A Variable lymphocyte rec 99.8 4.1E-18 1.4E-22 126.4 12.5 115 121-235 27-141 (177)
116 1xeu_A Internalin C; cellular 99.8 1.3E-17 4.3E-22 131.5 13.4 145 1-210 44-188 (263)
117 2ell_A Acidic leucine-rich nuc 99.7 7E-18 2.4E-22 124.0 9.9 109 121-231 48-160 (168)
118 3cvr_A Invasion plasmid antige 99.7 2.7E-17 9.4E-22 142.4 13.6 166 1-219 83-255 (571)
119 2ell_A Acidic leucine-rich nuc 99.7 3.9E-17 1.3E-21 120.0 11.9 138 20-212 22-164 (168)
120 2je0_A Acidic leucine-rich nuc 99.7 4.8E-17 1.6E-21 117.1 10.8 102 123-226 43-148 (149)
121 2wfh_A SLIT homolog 2 protein 99.7 1.3E-16 4.5E-21 119.9 13.4 89 121-209 53-141 (193)
122 3g39_A Variable lymphocyte rec 99.7 7.1E-17 2.4E-21 118.9 11.0 109 124-235 11-119 (170)
123 4b8c_D Glucose-repressible alc 99.7 5.8E-18 2E-22 151.2 5.0 115 121-238 246-361 (727)
124 2o6r_A Variable lymphocyte rec 99.7 2.3E-16 7.7E-21 116.9 12.8 134 23-211 8-141 (177)
125 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 115.8 9.2 128 121-250 16-149 (149)
126 3sb4_A Hypothetical leucine ri 99.7 2.2E-16 7.4E-21 128.5 12.5 222 1-225 52-328 (329)
127 1a9n_A U2A', U2A'; complex (nu 99.7 1.8E-16 6.1E-21 117.4 10.4 104 123-230 43-152 (176)
128 2r9u_A Variable lymphocyte rec 99.7 2.5E-16 8.6E-21 116.3 11.0 109 124-235 14-122 (174)
129 4b8c_D Glucose-repressible alc 99.6 3.3E-16 1.1E-20 139.9 9.7 143 15-213 217-360 (727)
130 1a9n_A U2A', U2A'; complex (nu 99.6 7E-16 2.4E-20 114.2 9.2 133 17-207 14-153 (176)
131 1dce_A Protein (RAB geranylger 99.6 6.6E-17 2.2E-21 140.4 3.5 197 2-225 353-567 (567)
132 1ds9_A Outer arm dynein; leuci 99.6 5.4E-18 1.9E-22 128.0 -3.3 155 18-231 14-185 (198)
133 1ds9_A Outer arm dynein; leuci 99.6 2.2E-17 7.4E-22 124.7 -4.1 148 2-208 22-186 (198)
134 3g39_A Variable lymphocyte rec 99.6 6.6E-14 2.3E-18 102.9 12.3 90 121-210 29-118 (170)
135 2ifg_A High affinity nerve gro 99.5 2E-14 6.9E-19 117.7 10.1 108 125-235 11-120 (347)
136 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 102.3 11.7 89 121-209 32-120 (174)
137 3ogk_B Coronatine-insensitive 99.5 3.2E-16 1.1E-20 137.1 -4.0 57 1-57 167-231 (592)
138 3ogk_B Coronatine-insensitive 99.5 6.9E-16 2.4E-20 135.0 -3.0 108 145-252 377-499 (592)
139 3sb4_A Hypothetical leucine ri 99.5 3.6E-13 1.2E-17 109.5 11.6 202 21-232 48-311 (329)
140 4fdw_A Leucine rich hypothetic 99.5 4.7E-12 1.6E-16 105.4 17.3 232 3-249 140-378 (401)
141 2ifg_A High affinity nerve gro 99.4 1.4E-12 4.7E-17 106.7 11.4 115 121-236 30-146 (347)
142 3un9_A NLR family member X1; l 99.4 4.8E-15 1.6E-19 122.3 -4.2 38 22-59 72-114 (372)
143 3un9_A NLR family member X1; l 99.4 3.1E-14 1.1E-18 117.4 -0.2 85 123-207 156-252 (372)
144 4fdw_A Leucine rich hypothetic 99.3 4.7E-11 1.6E-15 99.4 14.8 214 2-231 161-383 (401)
145 2p1m_B Transport inhibitor res 99.3 2.5E-13 8.7E-18 118.7 0.1 56 2-57 134-195 (594)
146 2p1m_B Transport inhibitor res 99.2 7.9E-13 2.7E-17 115.6 0.5 64 163-227 282-347 (594)
147 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.2E-14 89.5 4.0 85 144-229 250-341 (362)
148 2ra8_A Uncharacterized protein 98.8 1.3E-09 4.5E-14 89.3 2.5 162 15-231 132-320 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 2.9E-09 9.8E-14 79.1 1.5 111 121-231 35-164 (185)
150 3e4g_A ATP synthase subunit S, 98.7 1.1E-08 3.8E-13 74.5 3.4 83 147-229 62-150 (176)
151 3rw6_A Nuclear RNA export fact 98.7 9.5E-09 3.2E-13 80.3 3.1 79 144-224 168-257 (267)
152 4fs7_A Uncharacterized protein 98.6 1.1E-06 3.9E-11 72.8 14.7 86 140-228 291-376 (394)
153 3rw6_A Nuclear RNA export fact 98.6 1.4E-08 4.8E-13 79.3 1.8 107 142-250 137-260 (267)
154 1io0_A Tropomodulin; LRR prote 98.5 1.3E-08 4.5E-13 75.5 -0.1 115 139-253 29-163 (185)
155 4gt6_A Cell surface protein; l 98.4 1.2E-05 4E-10 66.7 15.8 126 121-252 264-389 (394)
156 4gt6_A Cell surface protein; l 98.4 1.5E-05 5E-10 66.1 15.7 110 137-251 256-367 (394)
157 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4.1E-12 69.0 2.4 86 122-207 61-152 (176)
158 4fs7_A Uncharacterized protein 98.2 1.6E-05 5.5E-10 65.9 12.7 207 10-228 59-286 (394)
159 3rfe_A Platelet glycoprotein I 98.2 3.5E-06 1.2E-10 58.4 6.3 56 150-207 12-68 (130)
160 4h09_A Hypothetical leucine ri 98.1 3.3E-05 1.1E-09 63.6 12.4 86 139-226 256-341 (379)
161 4h09_A Hypothetical leucine ri 98.1 7.2E-05 2.5E-09 61.5 13.7 95 121-218 262-356 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 1.8E-05 6.3E-10 58.6 1.6 109 121-229 40-168 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00086 2.9E-08 46.2 6.6 34 148-181 33-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0004 1.4E-08 51.4 2.5 112 141-252 36-168 (197)
165 2lz0_A Uncharacterized protein 73.9 4.9 0.00017 25.7 4.2 46 134-180 8-53 (100)
166 2lz0_A Uncharacterized protein 72.2 10 0.00036 24.1 5.5 48 156-204 6-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.4e-29 Score=203.77 Aligned_cols=243 Identities=22% Similarity=0.247 Sum_probs=189.9
Q ss_pred EEEcccccccc--cCCccccCcccCcEeeCcC-CcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccC
Q 048153 2 ILDLSYNRLNG--SIPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSN 77 (257)
Q Consensus 2 ~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~ 77 (257)
.|+|++|.+.+ .+|..|+.+++|++|++++ |.+.+..|..|+.+++|++|++++|.+++..|..+.... +..+...
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 68899999988 7888999999999999994 888888898899999999999999999877777665443 5556655
Q ss_pred CCCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--cccc-ccceEEcccCccccccCCCcCCCCCcCEEecc
Q 048153 78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVS-YLSGLDLSCNKLICHISPQIGNLTRIQTLNLS 154 (257)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~-~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~ 154 (257)
.+.+.... ...+..+..++.+++..+.+...... ..++ .|++|++++|.+.+..|..+..++ |+.|+++
T Consensus 134 ~N~l~~~~-------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 134 YNALSGTL-------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp SSEEESCC-------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCccCCcC-------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 55544211 12233455667777777665422211 1233 788999999998888888888877 9999999
Q ss_pred CCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153 155 HNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL 234 (257)
Q Consensus 155 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 234 (257)
+|.+++..+..+..+++|+.|++++|++++..+. +..+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9998888888888889999999999998855544 677889999999999998888888888999999999999988888
Q ss_pred CCCCccCcccccccccCCc
Q 048153 235 PLPICRSPVTMLKASTTNK 253 (257)
Q Consensus 235 ~~~~~~~~l~~l~~~~~~~ 253 (257)
|.....+.++.+++++|..
T Consensus 285 p~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 285 PQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCSTTGGGSCGGGTCSSSE
T ss_pred CCCccccccChHHhcCCCC
Confidence 8775668888888888863
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3e-29 Score=203.24 Aligned_cols=228 Identities=30% Similarity=0.474 Sum_probs=189.0
Q ss_pred CEEEccc-ccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCC
Q 048153 1 MILDLSY-NRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNG 78 (257)
Q Consensus 1 ~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~ 78 (257)
++|++++ |.+.+.+|..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+... .+..+....
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 5799995 99998999999999999999999999998999999999999999999999998777766554 366666666
Q ss_pred CCCC-CCcchhhhhhhhhhhccc-chhhcccccccccccccc--ccccccceEEcccCccccccCCCcCCCCCcCEEecc
Q 048153 79 SSLK-PFETSFLVKNIYIYREKK-ILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLS 154 (257)
Q Consensus 79 ~~l~-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~ 154 (257)
+.+. .++.. +..+. .++.+++..+.+...... ..+. |++|++++|.+++..|..+..+++|+.|+++
T Consensus 159 N~l~~~~p~~--------l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 159 NRISGAIPDS--------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp SCCEEECCGG--------GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CcccCcCCHH--------HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 6654 22221 12233 566666666655422111 1133 9999999999998899999999999999999
Q ss_pred CCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153 155 HNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL 234 (257)
Q Consensus 155 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 234 (257)
+|.+++..+. +..+++|+.|++++|++++..|..+..+++|+.|++++|++.+.+|.. ..+++|+.+++++|+++|..
T Consensus 230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 9999965555 788899999999999999899999999999999999999999988886 78999999999999999998
Q ss_pred CCCCc
Q 048153 235 PLPIC 239 (257)
Q Consensus 235 ~~~~~ 239 (257)
|...|
T Consensus 308 p~~~C 312 (313)
T 1ogq_A 308 PLPAC 312 (313)
T ss_dssp TSSCC
T ss_pred CCCCC
Confidence 87766
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.1e-29 Score=198.47 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=156.5
Q ss_pred EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC-
Q 048153 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS- 80 (257)
Q Consensus 3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~- 80 (257)
++.+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.... +..+....+.
T Consensus 16 ~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 444444444 233222 24555555555555544444455555555555555555544444333322 3333333332
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL 158 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (257)
+..+... .+..+..++.+++..+.+..... ...+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 93 l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 93 LRSVDPA-------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCCCCTT-------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccccCHH-------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 2222111 11123344455555554443322 12378899999999999977777899999999999999999
Q ss_pred ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153 159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI 238 (257)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 238 (257)
++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|+|.|+|+...
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~ 245 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence 98777789999999999999999998889999999999999999999997766789999999999999999999988643
Q ss_pred ccCcccccc
Q 048153 239 CRSPVTMLK 247 (257)
Q Consensus 239 ~~~~l~~l~ 247 (257)
...+++.+.
T Consensus 246 ~~~~l~~~~ 254 (285)
T 1ozn_A 246 LWAWLQKFR 254 (285)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcc
Confidence 333344333
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.6e-28 Score=220.99 Aligned_cols=246 Identities=26% Similarity=0.332 Sum_probs=142.6
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS 80 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~ 80 (257)
+|++++|++++..|..++.+++|++|++++|++.+..|..|+.+++|++|++++|.+.+..|..+... .+..+....+.
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 45566666665566666666666666666666665666666666666666666666665555544332 24444444444
Q ss_pred CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL 158 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (257)
+..... ..+.....++.+++..+.+...... ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 478 l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 478 LTGEIP-------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSCCC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ccCcCC-------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 432111 1122334455555555544422111 2255666666666666666666666666666666666666
Q ss_pred ccCCCccc----------------------------------------------------------------------cC
Q 048153 159 IGTIPSTF----------------------------------------------------------------------SN 168 (257)
Q Consensus 159 ~~~~~~~~----------------------------------------------------------------------~~ 168 (257)
++..|..+ ..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 54444322 22
Q ss_pred ccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCcc-Ccccccc
Q 048153 169 LKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICR-SPVTMLK 247 (257)
Q Consensus 169 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~ 247 (257)
+++|+.|++++|++++.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+.. +.++.|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 345666666666666666666666666666666666666666666666666666666666666666665533 5666666
Q ss_pred cccCCcc
Q 048153 248 ASTTNKE 254 (257)
Q Consensus 248 ~~~~~~~ 254 (257)
+|+|+..
T Consensus 711 ls~N~l~ 717 (768)
T 3rgz_A 711 LSNNNLS 717 (768)
T ss_dssp CCSSEEE
T ss_pred CcCCccc
Confidence 6666543
No 5
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-27 Score=195.10 Aligned_cols=247 Identities=23% Similarity=0.257 Sum_probs=160.4
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|++++..+..|+++++|++|++++|.+++..|..|+.+++|++|++++|.++..+...+ ..+..+....+.
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~ 132 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE 132 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc
Confidence 479999999998877789999999999999999998889999999999999999999986544443 345555555555
Q ss_pred CCCCcchhhhh-------------------hhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCC
Q 048153 81 LKPFETSFLVK-------------------NIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQ 141 (257)
Q Consensus 81 l~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 141 (257)
+..+....+.. ....+..+..++.+.+..+.+....... .++|++|++++|.+++..+..
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGG
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHH
Confidence 54433221110 0111223334444444444444322222 356777777777776666666
Q ss_pred cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh-----
Q 048153 142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ----- 216 (257)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~----- 216 (257)
+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..+..
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 777777777777777777666666667777777777777776 56666666777777777777776554444432
Q ss_pred -ccCCCeeccccCccccc-C-CCCC-ccCcccccccccC
Q 048153 217 -FATFSESSYEGNHFLCG-L-PLPI-CRSPVTMLKASTT 251 (257)
Q Consensus 217 -~~~L~~l~l~~n~~~~~-~-~~~~-~~~~l~~l~~~~~ 251 (257)
.+.++.+++++|++.+. + |..+ |...++.+++++|
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 35666777777776542 1 2222 6677777777665
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=9.9e-28 Score=190.38 Aligned_cols=204 Identities=22% Similarity=0.255 Sum_probs=164.6
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
+.+++++++++ .+|..+. +++++|++++|.+....+..|..+++|++|++++|.++.+.+..+... .+..+....+
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 35788888888 4665443 678899999999887666788888999999999998887666655433 2444444444
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI 159 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (257)
.+..++... ...+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 96 ~l~~~~~~~-----------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 96 KLQALPIGV-----------------------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCCCCCTTT-----------------------------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCHhH-----------------------------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 433322111 012678999999999999888888999999999999999999
Q ss_pred cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.+++++|+|.|+|+.
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 88887899999999999999999977677788999999999999999977677788899999999999999999873
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=9e-28 Score=216.15 Aligned_cols=244 Identities=26% Similarity=0.325 Sum_probs=177.0
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
++|++++|++++..|..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+. +..+....+
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 4789999999988888899999999999999999888888888899999999999998887777665543 566666666
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCC-----------------
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISP----------------- 140 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~----------------- 140 (257)
.+...... .+..+..++.+++..+.+..... ...+++|++|++++|.+.+.+|.
T Consensus 501 ~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 501 RLTGEIPK-------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp CCCSCCCG-------GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred ccCCcCCh-------HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 65532111 12233445555555555432211 12255666777766666544443
Q ss_pred -----------------------------------------------------CcCCCCCcCEEeccCCccccCCCcccc
Q 048153 141 -----------------------------------------------------QIGNLTRIQTLNLSHNDLIGTIPSTFS 167 (257)
Q Consensus 141 -----------------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~ 167 (257)
.+..++.|+.|++++|.+++..|..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 344456788888888888888888888
Q ss_pred CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccc
Q 048153 168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLK 247 (257)
Q Consensus 168 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~ 247 (257)
.++.|+.|++++|++++.+|..++.+++|+.|||++|++.+.+|..++.+++|+.+++++|++.+.+|...-...+....
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~ 733 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888654333333333
Q ss_pred cccC
Q 048153 248 ASTT 251 (257)
Q Consensus 248 ~~~~ 251 (257)
..+|
T Consensus 734 ~~gN 737 (768)
T 3rgz_A 734 FLNN 737 (768)
T ss_dssp GCSC
T ss_pred hcCC
Confidence 3333
No 8
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-27 Score=194.75 Aligned_cols=248 Identities=20% Similarity=0.223 Sum_probs=169.0
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+.+..|..|+++++|++|++++|++++..|..|+.+++|++|++++|.++.+++..+ ..+..+....+.
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~ 134 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR 134 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc
Confidence 579999999998888899999999999999999998888999999999999999999986555444 445566666665
Q ss_pred CCCCcchhhhhh-------------------hhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCC
Q 048153 81 LKPFETSFLVKN-------------------IYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQ 141 (257)
Q Consensus 81 l~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 141 (257)
+..++...+... ...+... .++.+++..+.+..... ...++|++|++++|.+++..+..
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SSCSSCSCCBCCSSCCCCCCTTS
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cccCCCCEEECCCCcCCccCHHH
Confidence 554433221100 0000111 33334444443333222 12357778888888877776677
Q ss_pred cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh-----
Q 048153 142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ----- 216 (257)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~----- 216 (257)
+..+++|++|++++|.+++..+.++..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..+..
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 788888888888888888777777777788888888888887 66777777888888888888887655555543
Q ss_pred -ccCCCeeccccCcccc--cCCCCC-ccCcccccccccCCc
Q 048153 217 -FATFSESSYEGNHFLC--GLPLPI-CRSPVTMLKASTTNK 253 (257)
Q Consensus 217 -~~~L~~l~l~~n~~~~--~~~~~~-~~~~l~~l~~~~~~~ 253 (257)
.+.|+.+++++|++.+ ..|..+ |...++.++++.|++
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 3567788888888763 222222 667788888777653
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.7e-27 Score=202.32 Aligned_cols=228 Identities=19% Similarity=0.204 Sum_probs=190.7
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++|+|++|++++..+..|+++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+..+ .+..+....+
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 579999999999889999999999999999999998888999999999999999999998888777654 4677777777
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN 156 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (257)
.+..++... +..+..++.+++..+ .+..... ...+++|++|++++|.+++. | .+..+++|+.|++++|
T Consensus 158 ~l~~~~~~~-------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 158 PIESIPSYA-------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp CCCEECTTT-------TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTS
T ss_pred CcceeCHhH-------HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCC
Confidence 776544322 233445555555542 2222221 23378899999999999854 4 5888999999999999
Q ss_pred ccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 157 DLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99998899999999999999999999988888999999999999999999977778888999999999999999999874
Q ss_pred C
Q 048153 237 P 237 (257)
Q Consensus 237 ~ 237 (257)
.
T Consensus 309 ~ 309 (452)
T 3zyi_A 309 L 309 (452)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=200.39 Aligned_cols=228 Identities=20% Similarity=0.249 Sum_probs=189.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
+.|+|++|++.+..+..|+++++|++|++++|.+....+..|.++++|++|++++|.++...+..+... .+..+....+
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 479999999998888999999999999999999998888899999999999999999998877766654 4667777777
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN 156 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (257)
.+..+.... +..+..++.+++..+ .+..... ...+++|++|++++|.++ .+| .+..+++|+.|++++|
T Consensus 147 ~i~~~~~~~-------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 147 PIESIPSYA-------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp CCCEECTTT-------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTS
T ss_pred cccccCHHH-------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCC
Confidence 766544322 223445555665552 2222221 233788999999999998 444 4888999999999999
Q ss_pred ccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 157 DLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99998899999999999999999999988888999999999999999999977778888999999999999999999864
Q ss_pred C
Q 048153 237 P 237 (257)
Q Consensus 237 ~ 237 (257)
.
T Consensus 298 ~ 298 (440)
T 3zyj_A 298 L 298 (440)
T ss_dssp H
T ss_pred h
Confidence 3
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.9e-27 Score=202.10 Aligned_cols=114 Identities=25% Similarity=0.290 Sum_probs=55.9
Q ss_pred cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEc
Q 048153 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV 201 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 201 (257)
++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 34444444444444444444444455555555555544444444444455555555555554444444444555555555
Q ss_pred cCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 202 AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 202 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
++|++.+..+..++.+++|+.+++++|++.|+||
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5555554333344445555555555555555554
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.5e-27 Score=199.73 Aligned_cols=255 Identities=20% Similarity=0.235 Sum_probs=193.0
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChh--hhCCCCCCeeeccCceecccCCCC-CcC-Cccccccc
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ--LCRLNQLQLLDLSNNNLHGLIPPC-FDN-TTLHESYS 76 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~-~~l~~~~~ 76 (257)
++|+|++|++++..|..|+++++|++|++++|.+++..+.. |..+++|++|++++|.+.+..|.. +.. ..+..+..
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 57899999999888888999999999999999988644544 888889999999999888776654 333 33555555
Q ss_pred CCCCCCCCcchhhhhh---------------------------hhhhhcccchhhccccccccccc--------------
Q 048153 77 NGSSLKPFETSFLVKN---------------------------IYIYREKKILEIFEFTTKNIAYT-------------- 115 (257)
Q Consensus 77 ~~~~l~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~-------------- 115 (257)
..+.+.......+... .........++.++++.+.+...
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 5555443322211110 00001112344444444432210
Q ss_pred ---------------------------cccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccC
Q 048153 116 ---------------------------YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSN 168 (257)
Q Consensus 116 ---------------------------~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 168 (257)
+.+...++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..
T Consensus 242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 321 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321 (455)
T ss_dssp EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred eeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC
Confidence 01111357999999999999999999999999999999999999888999999
Q ss_pred ccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccc
Q 048153 169 LKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLK 247 (257)
Q Consensus 169 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~ 247 (257)
+++|+.|++++|++++..+..+..+++|++|++++|++.+..|..+..+++|++|++++|.+..-.+..+ -.+.++.|+
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 9999999999999997778889999999999999999998889999999999999999999876433333 348999999
Q ss_pred cccCCccc
Q 048153 248 ASTTNKEM 255 (257)
Q Consensus 248 ~~~~~~~~ 255 (257)
+++|...+
T Consensus 402 l~~N~l~~ 409 (455)
T 3v47_A 402 LHTNPWDC 409 (455)
T ss_dssp CCSSCBCC
T ss_pred ccCCCccc
Confidence 99997653
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.1e-27 Score=191.81 Aligned_cols=225 Identities=18% Similarity=0.246 Sum_probs=166.6
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++|+|++|.+. .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.++. .|..+..+ .+..+....+
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEECCCC
Confidence 46899999999 67878888999999999999999 788889999999999999999984 44444332 2333333221
Q ss_pred C-CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153 80 S-LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL 158 (257)
Q Consensus 80 ~-l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (257)
. ...++..... .. .......+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 161 ~~~~~~p~~~~~-------------------~~--~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 161 PELTELPEPLAS-------------------TD--ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp TTCCCCCSCSEE-------------------EC---CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred CCccccChhHhh-------------------cc--chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 1 1111110000 00 0000112677888888888887 6677788888889999988888
Q ss_pred ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153 159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI 238 (257)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 238 (257)
++ .|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 84 55568888888889998888887888888888888999998888888888888888888999999888888888777
Q ss_pred cc-CcccccccccC
Q 048153 239 CR-SPVTMLKASTT 251 (257)
Q Consensus 239 ~~-~~l~~l~~~~~ 251 (257)
.. +.++.+++..+
T Consensus 298 ~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 298 AQLPANCIILVPPH 311 (328)
T ss_dssp GGSCTTCEEECCGG
T ss_pred hhccCceEEeCCHH
Confidence 44 66666666544
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.4e-27 Score=188.96 Aligned_cols=231 Identities=21% Similarity=0.255 Sum_probs=168.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCccccc--CChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGK--VPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNG 78 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~ 78 (257)
++|++++|+++...+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+....+.......+..+....
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC
Confidence 4788999999866566688999999999999988733 35677788899999999998876544333333455555555
Q ss_pred CCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCcccc-ccCCCcCCCCCcCEEeccC
Q 048153 79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSH 155 (257)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~ 155 (257)
+.+..+... ..+..+..++.+++..+.+...... ..+++|++|++++|.+.+ ..|..+..+++|++|++++
T Consensus 111 n~l~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 111 SNLKQMSEF------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp SEEESSTTT------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred Ccccccccc------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 554433321 1223345566666666655433222 236788888888888875 5677888888888888888
Q ss_pred CccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-CCCeeccccCcccccC
Q 048153 156 NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-TFSESSYEGNHFLCGL 234 (257)
Q Consensus 156 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~ 234 (257)
|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|..+..++ +|+.+++++|++.|+|
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 888877788888888888888888888866666777888888888888888887787777774 8888888888888887
Q ss_pred CCC
Q 048153 235 PLP 237 (257)
Q Consensus 235 ~~~ 237 (257)
+..
T Consensus 265 ~~~ 267 (306)
T 2z66_A 265 EHQ 267 (306)
T ss_dssp GGH
T ss_pred ChH
Confidence 644
No 15
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.6e-26 Score=184.01 Aligned_cols=207 Identities=21% Similarity=0.221 Sum_probs=162.6
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
++|++++|++++..+..|+++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.... +..+....+
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 4688888888877777888888888888888888877777788888888888888888877666554432 333433333
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccc-cCCCcCCCCCcCEEeccCCcc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICH-ISPQIGNLTRIQTLNLSHNDL 158 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l 158 (257)
.+..+... ....+++|++|++++|.+++. +|..+..+++|++|++++|.+
T Consensus 111 ~l~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 111 NLASLENF-----------------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCCCSTTC-----------------------------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CccccCch-----------------------------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 33322110 012267899999999999864 588999999999999999999
Q ss_pred ccCCCccccCccCCC----EEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153 159 IGTIPSTFSNLKHIE----SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL 234 (257)
Q Consensus 159 ~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 234 (257)
++..+..+..+..|+ .|++++|++++..+..+. ..+|+.|++++|++.+..+..+..+++|+.+++++|+|.|+|
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 988888888777777 899999999965555443 458999999999999776777889999999999999999999
Q ss_pred CCC
Q 048153 235 PLP 237 (257)
Q Consensus 235 ~~~ 237 (257)
|..
T Consensus 241 ~~l 243 (276)
T 2z62_A 241 PRI 243 (276)
T ss_dssp TTT
T ss_pred Cch
Confidence 843
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=9.5e-27 Score=198.96 Aligned_cols=236 Identities=20% Similarity=0.165 Sum_probs=167.3
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
++|+|++|.+++..|..|+++++|++|++++|++....+..|..+++|++|++++|.+.+..+..+..+. +..+....+
T Consensus 59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 4688888888877788888888888888888888865556677888888888888888777666554432 344443333
Q ss_pred CCCCCcchhhhh-----------------hhhhhhcccchhhccccccccccccc-------------------------
Q 048153 80 SLKPFETSFLVK-----------------NIYIYREKKILEIFEFTTKNIAYTYQ------------------------- 117 (257)
Q Consensus 80 ~l~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~------------------------- 117 (257)
.+..+....+.. ....+..+..++.+.+..+.+.....
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 332211100000 00112222333333333332221110
Q ss_pred -cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCC
Q 048153 118 -GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTL 196 (257)
Q Consensus 118 -~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 196 (257)
.....+|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 0112267788888888875544578889999999999999998888889999999999999999998888899999999
Q ss_pred CEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 197 AVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 197 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
+.|++++|++.+..+..+..+++|+.+++++|+|.|+|+.
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 9999999999977777788899999999999999998764
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=6.9e-26 Score=177.84 Aligned_cols=178 Identities=24% Similarity=0.306 Sum_probs=155.7
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------ 81 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD------------ 81 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc------------
Confidence 36889999998 5665554 68999999999999888888999999999999999998776655543
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 82 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 121 (251)
T 3m19_A 82 ----------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121 (251)
T ss_dssp ----------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC
Confidence 6779999999999998877888999999999999999998
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 233 (257)
..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.+++++|+|.|+
T Consensus 122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777888899999999999999966666788899999999999999977777888899999999999999987
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=4e-26 Score=181.30 Aligned_cols=180 Identities=25% Similarity=0.278 Sum_probs=143.1
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+.|++++|.+.. .+ .++.+++|++|++++|.+.+ ...+..+++|++|++++|.+++..+..+..
T Consensus 44 ~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------------ 107 (272)
T 3rfs_A 44 DQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDK------------ 107 (272)
T ss_dssp CEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred eeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcC------------
Confidence 356777777663 22 36677777777777777764 235667777777777777776555444332
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 108 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 108 ----------------------------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp ----------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 6779999999999987777778999999999999999998
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|++.|.||.
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 7777888899999999999999976676778899999999999999987777788899999999999999998873
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-25 Score=187.65 Aligned_cols=246 Identities=21% Similarity=0.229 Sum_probs=147.8
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++|++++|.+.+..+..|+.+++|++|++++|.+.+..|..|+.+++|++|++++|.++..++..+... .+..+....+
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 356666666665555566666666666666666665555555666666666666666654444433322 2333433333
Q ss_pred CCCCCcc------------------------hhhhhhhhh---------hhcccchhhccccccccccccccccccccce
Q 048153 80 SLKPFET------------------------SFLVKNIYI---------YREKKILEIFEFTTKNIAYTYQGRVVSYLSG 126 (257)
Q Consensus 80 ~l~~~~~------------------------~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 126 (257)
.+..+.. ......... ......++.+++..+.+.... ....++|++
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~ 230 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTI 230 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE-CCCCSSCCE
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc-ccccccccE
Confidence 3322211 111000000 000011222333333332221 122456777
Q ss_pred EEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcc
Q 048153 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNL 206 (257)
Q Consensus 127 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 206 (257)
|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ++..+..+++|+.|++++|++
T Consensus 231 L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 231 LKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred EECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc
Confidence 77777777643 467778888888888888887778888888888888888888874 455556778888888888888
Q ss_pred cCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCc
Q 048153 207 SGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNK 253 (257)
Q Consensus 207 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (257)
. .+|..+..+++|+.|++++|++.. .|.. ..+.++.|++++|.-
T Consensus 308 ~-~~~~~~~~l~~L~~L~L~~N~i~~-~~~~-~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 308 L-HVERNQPQFDRLENLYLDHNSIVT-LKLS-THHTLKNLTLSHNDW 351 (390)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCC-CCCC-TTCCCSEEECCSSCE
T ss_pred e-ecCccccccCcCCEEECCCCccce-eCch-hhccCCEEEcCCCCc
Confidence 7 667667788888888888888654 3422 446788888888764
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=6.2e-26 Score=199.27 Aligned_cols=252 Identities=17% Similarity=0.200 Sum_probs=151.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
++|++++|.+++..|..|+++++|++|++++|++.+..|..|+.+++|++|++++|.+++..|..+..+. +..+....+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 5789999999988888999999999999999999888888899999999999999999888787776554 555666666
Q ss_pred CCCCCcchhhhh-----------------hhhhhhcccchhhcccccccccccccc--ccccccc--eEEcccCcccccc
Q 048153 80 SLKPFETSFLVK-----------------NIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLS--GLDLSCNKLICHI 138 (257)
Q Consensus 80 ~l~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~--~L~ls~n~~~~~~ 138 (257)
.+..+....+.. ..........++.+++..+.+...... ..+++|+ ++++++|.+.+..
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 555432221100 000111123344444444433322111 1234455 5566666555444
Q ss_pred CCCcCCC---------------------------------------------------CCcCEEeccCCccccCCCcccc
Q 048153 139 SPQIGNL---------------------------------------------------TRIQTLNLSHNDLIGTIPSTFS 167 (257)
Q Consensus 139 ~~~~~~l---------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~ 167 (257)
|..+... ..|+.+++++|.+++..+..|.
T Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~ 275 (606)
T 3t6q_A 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275 (606)
T ss_dssp TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT
T ss_pred hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc
Confidence 4332210 0344444555555544455555
Q ss_pred CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC--ccCcccc
Q 048153 168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI--CRSPVTM 245 (257)
Q Consensus 168 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~ 245 (257)
.+++|+.|++++|+++ .+|..+..+++|++|++++|.+.+..|..++.+++|+.+++++|.+...+|... ..+.++.
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 6666666666666666 555556666666666666666665555566666666666666666555554432 2255555
Q ss_pred cccccCCc
Q 048153 246 LKASTTNK 253 (257)
Q Consensus 246 l~~~~~~~ 253 (257)
|++++|..
T Consensus 355 L~l~~n~l 362 (606)
T 3t6q_A 355 LDLSHDDI 362 (606)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 55555543
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.7e-25 Score=179.19 Aligned_cols=200 Identities=22% Similarity=0.222 Sum_probs=162.1
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+.+++++++++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+. .....+..+....+.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC
T ss_pred cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc
Confidence 46888899988 4554443 6889999999999887788899999999999999998865443 222234444444444
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+..++.. ...+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 89 l~~l~~~------------------------------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 89 LQSLPLL------------------------------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp CSSCCCC------------------------------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred CCcCchh------------------------------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 4322211 1226789999999999998888889999999999999999998
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|++. .+|..+...++|+.+++++|+|.|+|.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 88888899999999999999999666667788999999999999999 778888888999999999999999874
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5e-26 Score=183.69 Aligned_cols=238 Identities=21% Similarity=0.214 Sum_probs=182.2
Q ss_pred CEEEccccccccc--CCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCC-CCCcC-Cccccccc
Q 048153 1 MILDLSYNRLNGS--IPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIP-PCFDN-TTLHESYS 76 (257)
Q Consensus 1 ~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-~~l~~~~~ 76 (257)
++|++++|.++.. .+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+++..+ ..+.. ..+..+..
T Consensus 55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133 (306)
T ss_dssp SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEEC
Confidence 5789999998843 3567778999999999999998 566678899999999999999987655 33433 33555665
Q ss_pred CCCCCCCCcchhhhhhhhhhhcccchhhcccccccccc---ccccccccccceEEcccCccccccCCCcCCCCCcCEEec
Q 048153 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY---TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNL 153 (257)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 153 (257)
..+.+..... ..+..+..++.+++..+.+.. ......+++|++|++++|.+++..|..+..+++|++|++
T Consensus 134 ~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 134 SHTHTRVAFN-------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TTSCCEECST-------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcCCccch-------hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 5555443221 122334566667777665543 222334789999999999999888899999999999999
Q ss_pred cCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCC-CCCEEEccCCcccCCCC--hhhhhccCCCeeccccCcc
Q 048153 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELN-TLAVFSVAHNNLSGKIP--EWTAQFATFSESSYEGNHF 230 (257)
Q Consensus 154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~--~~~~~~~~L~~l~l~~n~~ 230 (257)
++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|.+....+ .....+...+.+.+..+.+
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~ 286 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 286 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC
T ss_pred CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc
Confidence 99999988888899999999999999999988888888885 99999999999986533 2233455667777888899
Q ss_pred cccCCCCCccCccccc
Q 048153 231 LCGLPLPICRSPVTML 246 (257)
Q Consensus 231 ~~~~~~~~~~~~l~~l 246 (257)
.|..|...-..++..+
T Consensus 287 ~C~~p~~~~g~~~~~~ 302 (306)
T 2z66_A 287 ECATPSDKQGMPVLSL 302 (306)
T ss_dssp BEEESGGGTTCBGGGC
T ss_pred ccCCchhhCCceeeee
Confidence 9988887666555544
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.1e-25 Score=198.66 Aligned_cols=248 Identities=21% Similarity=0.272 Sum_probs=173.9
Q ss_pred CEEEcccccccccCCc--cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcC-Cc-cccccc
Q 048153 1 MILDLSYNRLNGSIPD--LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TT-LHESYS 76 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~-l~~~~~ 76 (257)
++|++++|+++ .+|. .++.+++|++|++++|++.+.+| .|+.+++|++|++++|.++. .|..+.. .. +..+..
T Consensus 308 ~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 308 QIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSF 384 (636)
T ss_dssp CEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEEC
T ss_pred CEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEc
Confidence 45777777777 5666 67777777777777777776666 66677777777777777763 3333322 23 455555
Q ss_pred CCCCCCCCcchhhhhh------------------hhhhh-------cccchhhcccccccccccccc--ccccccceEEc
Q 048153 77 NGSSLKPFETSFLVKN------------------IYIYR-------EKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDL 129 (257)
Q Consensus 77 ~~~~l~~~~~~~~~~~------------------~~~~~-------~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l 129 (257)
..+.+..++....... ...+. ....++.+++..+.+...... ..+++|++|++
T Consensus 385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred cCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 5555444332211100 00011 223556666666666543332 22678999999
Q ss_pred ccCccccccCCCcCCCC-------CcCEEeccCCccccCCCcccc--CccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 130 SCNKLICHISPQIGNLT-------RIQTLNLSHNDLIGTIPSTFS--NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 130 s~n~~~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
++|.++...+..+.... +|+.|++++|.++ ..|..+. .+++|+.|++++|++++ +|..+..+++|+.|+
T Consensus 465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542 (636)
T ss_dssp CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence 99999844444444333 8999999999999 5666665 88999999999999996 788888999999999
Q ss_pred c------cCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCccc
Q 048153 201 V------AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEM 255 (257)
Q Consensus 201 L------~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (257)
+ ++|++.+.+|..+..+++|++|++++|.+ +.+|..++ +.++.|++++|....
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 9 56778889999999999999999999998 78888766 899999999996543
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.6e-25 Score=175.02 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=160.0
Q ss_pred ccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCCCCCCcchhhhhhhhhhhccc
Q 048153 22 SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKK 100 (257)
Q Consensus 22 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (257)
.+.+.++++++.++ .+|..+. +++++|++++|.+++..+..+.... +..+....+.+..++...+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~----------- 81 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF----------- 81 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT-----------
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh-----------
Confidence 45789999999998 5666554 5899999999999887766654432 4444444444433222110
Q ss_pred chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCC
Q 048153 101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180 (257)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 180 (257)
..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 82 ------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 82 ------------------KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp ------------------SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ------------------cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 12678999999999999877788899999999999999999888888999999999999999
Q ss_pred cccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK 253 (257)
Q Consensus 181 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~ 253 (257)
++++..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+..-.+..+ ..+.++.|++++|.-
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 9996666678899999999999999997777788899999999999998775333333 347899999999874
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.4e-26 Score=193.84 Aligned_cols=225 Identities=18% Similarity=0.182 Sum_probs=158.7
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
++|+|++|++++..+..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.++...+..+..+. +..+....+
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 4677777777776677777777777777777777766677777777777777777777765555443322 333333333
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI 159 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (257)
.+..... ..-..+++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 115 ~i~~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 115 KIVILLD-----------------------------YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCCEECT-----------------------------TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ccccCCh-----------------------------hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 2221110 01122677888888888888777778888888888888888888
Q ss_pred cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC-C
Q 048153 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-I 238 (257)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~ 238 (257)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|.+. .+|.. +
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~ 244 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV 244 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHH
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHh
Confidence 776677888888888888888888766667788888888888888877777766656668888888888765 34422 2
Q ss_pred -ccCcccccccccCCccc
Q 048153 239 -CRSPVTMLKASTTNKEM 255 (257)
Q Consensus 239 -~~~~l~~l~~~~~~~~~ 255 (257)
..+.++.|++++|....
T Consensus 245 ~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp TTCTTCCEEECCSSCCCE
T ss_pred cCccccCeeECCCCcCCc
Confidence 34788888988886543
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=6.7e-27 Score=192.51 Aligned_cols=228 Identities=19% Similarity=0.245 Sum_probs=165.1
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~~~ 79 (257)
++|++++|++++..+..|+++++|++|++++|.+++..+..|+.+++|++|++++|.+++..+..+.. ..+..+....+
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 46888999988777778888999999999999888777788888889999999999888665543433 34666666666
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccc-ccccc--ccccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKN-IAYTY--QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN 156 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (257)
.+..++.. ..+..+..++.+++..+. +.... ....+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 135 ~l~~l~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 135 PYKTLGET------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp CCSSSCSS------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCcccCch------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 66654431 112234455666666552 33221 1223677888888888888777888888888888888888
Q ss_pred ccccCCCccccCccCCCEEEccCCccccc-------------------------------CChhhhcCCCCCEEEccCCc
Q 048153 157 DLIGTIPSTFSNLKHIESLDLSYNQLNGK-------------------------------IPLQLVELNTLAVFSVAHNN 205 (257)
Q Consensus 157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------------------------~~~~~~~~~~L~~L~L~~n~ 205 (257)
.++......+..+++|+.|++++|++++. +|..+..+++|+.|++++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 88754444455677888888888887753 23446678888999999998
Q ss_pred ccCCCChh-hhhccCCCeeccccCcccccCC
Q 048153 206 LSGKIPEW-TAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 206 l~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+. .+|.. +..+++|+++++++|++.|+||
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 88 44544 5788889999999999888886
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-25 Score=195.13 Aligned_cols=246 Identities=21% Similarity=0.222 Sum_probs=149.1
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++|+|++|.+++..|..|+.+++|++|++++|.+.+..|..|+.+++|++|++++|.+++.++..+..+ .+..+....+
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 356666666665555566666666666666666665555555666666666666666655544443332 2333443333
Q ss_pred CCCCCcc------------------------hhhhhhhhh---------hhcccchhhccccccccccccccccccccce
Q 048153 80 SLKPFET------------------------SFLVKNIYI---------YREKKILEIFEFTTKNIAYTYQGRVVSYLSG 126 (257)
Q Consensus 80 ~l~~~~~------------------------~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 126 (257)
.+..+.. ......... ......++.+++..+.+..... ...++|++
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~ 236 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTI 236 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC-SCCSCCCE
T ss_pred cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc-ccCCCCCE
Confidence 3332221 111100000 0001112222333332222211 22346777
Q ss_pred EEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcc
Q 048153 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNL 206 (257)
Q Consensus 127 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 206 (257)
|++++|.+++ +.++..+++|+.|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|.+
T Consensus 237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence 7777777764 3567778888888888888888888888888888888888888884 455566778888888888888
Q ss_pred cCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCc
Q 048153 207 SGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNK 253 (257)
Q Consensus 207 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (257)
. .+|..+..+++|+.|++++|.+.. .|.. ..+.++.|++++|.-
T Consensus 314 ~-~i~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 314 L-HVERNQPQFDRLENLYLDHNSIVT-LKLS-THHTLKNLTLSHNDW 357 (597)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCC-CCCC-TTCCCSEEECCSSCE
T ss_pred C-ccCcccccCCCCCEEECCCCCCCC-cChh-hcCCCCEEEeeCCCC
Confidence 7 667777788888888888888654 3322 446788888888764
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.6e-25 Score=176.33 Aligned_cols=220 Identities=15% Similarity=0.131 Sum_probs=174.6
Q ss_pred cEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCCCCCCcchhhhhhhhhhhcccchh
Q 048153 25 SHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSSLKPFETSFLVKNIYIYREKKILE 103 (257)
Q Consensus 25 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (257)
+.++++++.++ .+|..+ .+++++|++++|.+++..+..+... .+..+....+.+..+... .+..+..++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-------AFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-------hcCCccCCC
Confidence 67889999888 456544 4589999999999998887766554 466666666666544322 223445677
Q ss_pred hccccccc-cccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCC
Q 048153 104 IFEFTTKN-IAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180 (257)
Q Consensus 104 ~~~~~~~~-~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 180 (257)
.+++..+. +..... ...+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 77777765 444322 233788999999999999888888999999999999999999888888999999999999999
Q ss_pred cccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCcc
Q 048153 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNKE 254 (257)
Q Consensus 181 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~~ 254 (257)
++++..+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+....+..+ -.+.++.|++++|...
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9996666678999999999999999998889999999999999999999876433323 3478999999998653
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=6.3e-25 Score=195.33 Aligned_cols=231 Identities=21% Similarity=0.228 Sum_probs=183.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCC-hhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNG 78 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~ 78 (257)
+.|++++|++++..|..|+.+++|++|++++|.+.+.+| ..|..+++|++|++++|++.+..+..+.... +..+....
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 367888889988888889999999999999999986555 6788899999999999998887777665543 55555555
Q ss_pred CCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccC--------CCcCCCCCc
Q 048153 79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHIS--------PQIGNLTRI 148 (257)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~--------~~~~~l~~L 148 (257)
+.+..... ....+.....++.+++..+.+...... ..+++|++|++++|.+++..+ ..+..+++|
T Consensus 464 n~l~~~~~-----~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 464 VALKNVDS-----SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp SCCBCTTC-----SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred cccccccc-----CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 54432211 112234455677777777776654432 347889999999999986532 237889999
Q ss_pred CEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhh-hccCCCeecccc
Q 048153 149 QTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTA-QFATFSESSYEG 227 (257)
Q Consensus 149 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~ 227 (257)
+.|++++|.++.+.+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+. .+++|+.+++++
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 9999999999977777899999999999999999976667788999999999999999987777777 789999999999
Q ss_pred CcccccCCC
Q 048153 228 NHFLCGLPL 236 (257)
Q Consensus 228 n~~~~~~~~ 236 (257)
|||.|+|+.
T Consensus 619 N~~~c~c~~ 627 (680)
T 1ziw_A 619 NPFDCTCES 627 (680)
T ss_dssp CCCCBCCCC
T ss_pred CCcccCCcc
Confidence 999999985
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=2.1e-24 Score=175.95 Aligned_cols=247 Identities=16% Similarity=0.186 Sum_probs=180.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++++++++.+. .+|..+. +++++|++++|.+++..+..|+.+++|++|++++|.+++..|..+... .+..+....+
T Consensus 34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 46889999988 5665553 789999999999998777789999999999999999998878777664 4677777777
Q ss_pred CCCCCcchhhhhh--------------hhhhhcccchhhcccccccccc----ccccccccccceEEcccCccccccCCC
Q 048153 80 SLKPFETSFLVKN--------------IYIYREKKILEIFEFTTKNIAY----TYQGRVVSYLSGLDLSCNKLICHISPQ 141 (257)
Q Consensus 80 ~l~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~L~~L~ls~n~~~~~~~~~ 141 (257)
.+..++....... ...+..+..++.+++..+.+.. ......+++|++|++++|.++. +|..
T Consensus 111 ~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~ 189 (330)
T 1xku_A 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG 189 (330)
T ss_dssp CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS
T ss_pred cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcc
Confidence 7765544332110 1112333445555555554432 1112235678888888887774 3443
Q ss_pred cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCC
Q 048153 142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS 221 (257)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 221 (257)
+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++. .+|..+..+++|+
T Consensus 190 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 266 (330)
T 1xku_A 190 LP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266 (330)
T ss_dssp CC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred cc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence 33 67888888888888777888888889999999999988776777888899999999999888 7777788889999
Q ss_pred eeccccCcccccCCCCCcc-------CcccccccccCCcc
Q 048153 222 ESSYEGNHFLCGLPLPICR-------SPVTMLKASTTNKE 254 (257)
Q Consensus 222 ~l~l~~n~~~~~~~~~~~~-------~~l~~l~~~~~~~~ 254 (257)
++++++|++..-.+..+|. ..++.+++++|...
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 9999999877644444442 56777888887654
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.6e-25 Score=180.36 Aligned_cols=207 Identities=18% Similarity=0.207 Sum_probs=170.0
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|+|++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+.+..|..+........
T Consensus 107 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~------ 178 (328)
T 4fcg_A 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE------ 178 (328)
T ss_dssp SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC------
T ss_pred CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh------
Confidence 57999999999 88999999999999999999999 78889999999999999998877777765543111000
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccc-cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ-GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI 159 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (257)
+..+..++.+++..+.+..... ...+++|++|++++|.+++ +|..+..+++|++|++++|.+.
T Consensus 179 ---------------~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 179 ---------------HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp ---------------EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTC
T ss_pred ---------------hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcch
Confidence 1122234444444444332211 1237789999999999995 5667999999999999999999
Q ss_pred cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL 231 (257)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 231 (257)
+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..++++++|+.+++..+.+.
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 899999999999999999999998899999999999999999999999999999999999999999987543
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=191.21 Aligned_cols=80 Identities=24% Similarity=0.209 Sum_probs=55.7
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+.+..|..|+++++|++|++++|++++..|..|+.+++|++|++++|.++.+++. ....+..+....+.
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence 4678888888766667788888888888888888777777788888888888888877754443 33334444444444
Q ss_pred CC
Q 048153 81 LK 82 (257)
Q Consensus 81 l~ 82 (257)
+.
T Consensus 102 l~ 103 (520)
T 2z7x_B 102 FD 103 (520)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=9.3e-26 Score=199.04 Aligned_cols=244 Identities=16% Similarity=0.169 Sum_probs=133.9
Q ss_pred CEEEccccccccc-----------------CCcccc--CcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCce-ecc
Q 048153 1 MILDLSYNRLNGS-----------------IPDLVD--GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNN-LHG 60 (257)
Q Consensus 1 ~~L~L~~n~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 60 (257)
++|+|++|.+++. +|+.++ ++++|++|++++|.+.+.+|..|+.+++|++|++++|. +++
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 5789999999975 888888 99999999999999888889899999999999999998 876
Q ss_pred -cCCCCCcC-------CcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccc-cccccccccccceEEccc
Q 048153 61 -LIPPCFDN-------TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIA-YTYQGRVVSYLSGLDLSC 131 (257)
Q Consensus 61 -~~~~~~~~-------~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~ls~ 131 (257)
..|..+.. ..+..+....+.+..++... .+..+..++.+++..+.+. .......+++|++|++++
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~------~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET------SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH------HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCCccCchh------hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence 55554433 34566666666665443300 1112233344444444333 111112234444445544
Q ss_pred CccccccCCCcCCCCC--------------------------cCEEeccCCccccCCCcccc-------CccCCCEEEcc
Q 048153 132 NKLICHISPQIGNLTR--------------------------IQTLNLSHNDLIGTIPSTFS-------NLKHIESLDLS 178 (257)
Q Consensus 132 n~~~~~~~~~~~~l~~--------------------------L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~ 178 (257)
|.++ .+|..+..+++ |+.|++++|.+++..|..+. .+++|+.|+++
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 4444 33444444444 45555555544444444444 34455555555
Q ss_pred CCcccccCChhhhcCCCCCEEEccCCcccCCCChhh-hhc-------cCCCeeccccCcccccCCCCCc---cCcccccc
Q 048153 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWT-AQF-------ATFSESSYEGNHFLCGLPLPIC---RSPVTMLK 247 (257)
Q Consensus 179 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~-------~~L~~l~l~~n~~~~~~~~~~~---~~~l~~l~ 247 (257)
+|+++...+..+..+++|+.|++++|++. .+|... ... ++|+.|++++|.+. .+|..+. .+.++.|+
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGID 519 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence 55555222222333455555555555555 333221 111 15555555555544 3443332 24555555
Q ss_pred cccCCc
Q 048153 248 ASTTNK 253 (257)
Q Consensus 248 ~~~~~~ 253 (257)
+++|..
T Consensus 520 Ls~N~l 525 (636)
T 4eco_A 520 LSYNSF 525 (636)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 555543
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2e-25 Score=190.97 Aligned_cols=215 Identities=21% Similarity=0.192 Sum_probs=150.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|+|++|.+++..|..|+.+++|++|++++|.+.+..| |..+++|++|++++|.+++..+. ..+..+....+.
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~ 110 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNN 110 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSC
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCc
Confidence 479999999998888899999999999999999986555 88999999999999999876543 345556666666
Q ss_pred CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCcC-CCCCcCEEeccCCc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIG-NLTRIQTLNLSHND 157 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~-~l~~L~~L~l~~n~ 157 (257)
+..+.... +..++.+++..+.+...... ..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 111 l~~~~~~~----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 111 ISRVSCSR----------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCCEEECC----------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCCccc----------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 65544321 23455555555554443222 2256777777777777766666664 57777777777777
Q ss_pred cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+++..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.+++++|++.|.++
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence 775422 2346777777777777774 34446677777777777777773 56566677777777777777776443
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.3e-24 Score=175.98 Aligned_cols=247 Identities=17% Similarity=0.139 Sum_probs=177.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++++++++.+. .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+... .+..+....+
T Consensus 36 ~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46889999998 566555 3799999999999998888899999999999999999998877776654 4677777777
Q ss_pred CCCCCcchhhhhh--------------hhhhhcccchhhcccccccccc---ccccccccccceEEcccCccccccCCCc
Q 048153 80 SLKPFETSFLVKN--------------IYIYREKKILEIFEFTTKNIAY---TYQGRVVSYLSGLDLSCNKLICHISPQI 142 (257)
Q Consensus 80 ~l~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 142 (257)
.+..++....... ...+..+..++.+++..+.+.. ........+|++|++++|.+++ +|..+
T Consensus 113 ~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~ 191 (332)
T 2ft3_A 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL 191 (332)
T ss_dssp CCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSS
T ss_pred cCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCccc
Confidence 7766554332100 0112223333344444333321 0000000145555566555553 33322
Q ss_pred CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCe
Q 048153 143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSE 222 (257)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 222 (257)
. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++. .+|..+..+++|+.
T Consensus 192 ~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 192 P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 2 57888889999988888888999999999999999999777778899999999999999998 78888899999999
Q ss_pred eccccCcccccCCCCCcc-------CcccccccccCCcc
Q 048153 223 SSYEGNHFLCGLPLPICR-------SPVTMLKASTTNKE 254 (257)
Q Consensus 223 l~l~~n~~~~~~~~~~~~-------~~l~~l~~~~~~~~ 254 (257)
+++++|++....+..++. ..++.+++++|...
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999999987654444443 45788999888754
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.3e-24 Score=190.86 Aligned_cols=252 Identities=19% Similarity=0.196 Sum_probs=156.6
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS 80 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~ 80 (257)
.|++++|.+++..+..|+.+++|++|++++|.++ .+|..++.+++|++|++++|.+.+..+..+.... +..+....+.
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 5777888888777777888888888888888877 5666777788888888888877766554443322 3333333332
Q ss_pred CC-CCcchhhh----------------hh---hhhhhcccchhhcccccccccccccc--ccccccceEEcccCcccccc
Q 048153 81 LK-PFETSFLV----------------KN---IYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHI 138 (257)
Q Consensus 81 l~-~~~~~~~~----------------~~---~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~ 138 (257)
+. .++...+. .. ...+..+..++.+++..+.+...... ..+++|++|++++|.+.+..
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 21 11100000 00 11223334455555555544333211 22566777777777766554
Q ss_pred CC-CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc---CChhhhcCCCCCEEEccCCcccCCCChhh
Q 048153 139 SP-QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK---IPLQLVELNTLAVFSVAHNNLSGKIPEWT 214 (257)
Q Consensus 139 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 214 (257)
+. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++. .+..+..+++|+.|++++|++.+..|..+
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 43 366777777777777777766677777777777777777777642 22456677777777777777776667777
Q ss_pred hhccCCCeeccccCcccccCCCCCcc-CcccccccccCCccc
Q 048153 215 AQFATFSESSYEGNHFLCGLPLPICR-SPVTMLKASTTNKEM 255 (257)
Q Consensus 215 ~~~~~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~~~~~~~~~ 255 (257)
..+++|++|++++|.+.+..|..+.. ..+ .|++++|....
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 77777777777777777666655533 555 77777776543
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1e-24 Score=189.93 Aligned_cols=81 Identities=22% Similarity=0.137 Sum_probs=60.6
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+.+..|..|+++++|++|++++|++++..|..|+.+++|++|++++|.++.+++. ....+..+....+.
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC
Confidence 4688888888877777888888889999988888877788888888888888888888765443 33344555555554
Q ss_pred CCC
Q 048153 81 LKP 83 (257)
Q Consensus 81 l~~ 83 (257)
+..
T Consensus 133 l~~ 135 (562)
T 3a79_B 133 FDV 135 (562)
T ss_dssp CSB
T ss_pred ccc
Confidence 443
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-24 Score=196.04 Aligned_cols=246 Identities=19% Similarity=0.228 Sum_probs=169.3
Q ss_pred CEEEcccccccccCCc--cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCc-CCc-cccccc
Q 048153 1 MILDLSYNRLNGSIPD--LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFD-NTT-LHESYS 76 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~-l~~~~~ 76 (257)
++|+|++|+++ .+|. .|+.+++|++|++++|.+. .+| .|+.+++|++|++++|.++ ..|..+. ... +..+..
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 35666666666 5565 6666667777777766666 455 5666666666666666666 3333232 223 445555
Q ss_pred CCCCCCCCcchhhhhhh-----------------h----hhh--cccchhhcccccccccccccc--ccccccceEEccc
Q 048153 77 NGSSLKPFETSFLVKNI-----------------Y----IYR--EKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSC 131 (257)
Q Consensus 77 ~~~~l~~~~~~~~~~~~-----------------~----~~~--~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~ 131 (257)
..+.+..++........ . ... ....++.+++..+.+...... ..+++|++|++++
T Consensus 627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred cCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 55554443322111000 0 000 112455566666655533222 1367899999999
Q ss_pred CccccccCCCcCCC-------CCcCEEeccCCccccCCCcccc--CccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153 132 NKLICHISPQIGNL-------TRIQTLNLSHNDLIGTIPSTFS--NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA 202 (257)
Q Consensus 132 n~~~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 202 (257)
|.++...+..+... ++|+.|++++|.++ ..|..+. .+++|+.|++++|++++ +|..+..+++|+.|+++
T Consensus 707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred CcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 99984433334332 38999999999999 5677776 88999999999999996 78888899999999997
Q ss_pred C------CcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153 203 H------NNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 203 ~------n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
+ |++.+.+|..+..+++|+.|++++|.+ ..+|..++ +.|+.|++++|...
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNPNI 840 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCTTC
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCCCC
Confidence 6 788889999999999999999999998 88998866 69999999999764
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-25 Score=180.53 Aligned_cols=214 Identities=21% Similarity=0.200 Sum_probs=131.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|++++..|..|+.+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+. ..+..+....+.
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~----~~L~~L~l~~n~ 110 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNN 110 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSC
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCC----CCcCEEECCCCc
Confidence 468888888887767778888888888888888875443 77888888888888888765432 334444445555
Q ss_pred CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCc-CCCCCcCEEeccCCc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHND 157 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~-~~l~~L~~L~l~~n~ 157 (257)
+..+.... +..++.+++..+.+...... ..+++|++|++++|.+++..+..+ ..+++|++|++++|.
T Consensus 111 l~~~~~~~----------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 111 ISRVSCSR----------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CSEEEECC----------CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCCcCccc----------cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 44333211 23344455555544433221 225566666777666665555444 356666777777766
Q ss_pred cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153 158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL 234 (257)
Q Consensus 158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 234 (257)
+++... ...+++|+.|++++|++++ ++..+..+++|+.|++++|++. .+|..+..+++|+.+++++|++.|++
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred Cccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence 664422 2235666777777776663 3444666666777777777666 44555666666777777777666543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.9e-24 Score=178.31 Aligned_cols=242 Identities=20% Similarity=0.244 Sum_probs=153.2
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
++|++++|.+....+..|+.+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.... +..+....+
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 5789999999977667789999999999999999988888999999999999999999988888765544 667777777
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCC------------
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNL------------ 145 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l------------ 145 (257)
.+..++... +..+..++.+++..+.+..... ...+++|++|++++|.+++.....+..+
T Consensus 128 ~l~~l~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 128 DLSSLPRGI-------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCCCCCTTT-------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred ccCcCCHHH-------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence 776554432 2344556666776666554432 2336789999999988875432222211
Q ss_pred -------------------------CCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 146 -------------------------TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 146 -------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 1233333333333321 2344555555556665555554455555555666666
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK 253 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~ 253 (257)
+++|++.+ +|.....+++|++|++++|++. .+|..+ ..+.++.|++++|..
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence 66665552 3333344555666666666544 233222 225556666655543
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.1e-24 Score=191.44 Aligned_cols=207 Identities=21% Similarity=0.151 Sum_probs=170.1
Q ss_pred CEEEccccccccc--CCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCC-CCCcCC-ccccccc
Q 048153 1 MILDLSYNRLNGS--IPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIP-PCFDNT-TLHESYS 76 (257)
Q Consensus 1 ~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~-~l~~~~~ 76 (257)
++|++++|.+++. .|..+..+++|++|++++|.+.+ .|..+..+++|++|++++|.+.+..+ ..+... .+..+..
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 5799999999966 48889999999999999999984 56789999999999999999987766 344332 2333333
Q ss_pred CCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccc-ccCCCcCCCCCcCEEeccC
Q 048153 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSH 155 (257)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~ 155 (257)
..+.+..... .....+++|++|++++|.+.+ ..|..+..+++|+.|++++
T Consensus 432 ~~n~l~~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 432 SYTNTKIDFD-----------------------------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TTSCCEECCT-----------------------------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred cCCCCCccch-----------------------------hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 3333221110 011226789999999999987 4788999999999999999
Q ss_pred CccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-CCCeeccccCcccccC
Q 048153 156 NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-TFSESSYEGNHFLCGL 234 (257)
Q Consensus 156 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~ 234 (257)
|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|+|.|+|
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 9999888999999999999999999999888999999999999999999999 6676688887 5999999999999999
Q ss_pred CCCC
Q 048153 235 PLPI 238 (257)
Q Consensus 235 ~~~~ 238 (257)
+...
T Consensus 562 ~~~~ 565 (606)
T 3vq2_A 562 EHQK 565 (606)
T ss_dssp TTHH
T ss_pred ccHH
Confidence 8643
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.5e-24 Score=187.85 Aligned_cols=242 Identities=19% Similarity=0.248 Sum_probs=161.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
+++++++|.+....+..|+.+++|++|++++|.+.+..|..|+.+++|++|++++|.+++.++..+..+. +..+....+
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 4689999999987777889999999999999999988888999999999999999999998888766544 667777777
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCcCCC------------
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNL------------ 145 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l------------ 145 (257)
.+..++... +..+..|+.+++..+.+...... ..+++|++|++++|.+++.....+..+
T Consensus 134 ~l~~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 134 DLSSLPRGI-------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCCCCCTTT-------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CCCCCCHHH-------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 776554432 23445566667776665544332 336788888888888775432222221
Q ss_pred -------------------------CCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 146 -------------------------TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 146 -------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 123344444444442 24455566666666666666665566666666666666
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK 253 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~ 253 (257)
+++|.+.+ +|..+..+++|+.|++++|.+. .+|..+ ..+.|+.|++++|..
T Consensus 285 Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 66666663 3444455666666666666655 344333 336666666666654
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=6.8e-25 Score=170.95 Aligned_cols=194 Identities=15% Similarity=0.144 Sum_probs=139.6
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCc-ccccCChhhhCCCCCCeeeccC-ceecccCCCCCcCCcccccccCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNN-LEGKVPVQLCRLNQLQLLDLSN-NNLHGLIPPCFDNTTLHESYSNG 78 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~~~~~~ 78 (257)
++|++++|++++..+..|+++++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..+..
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~---------- 103 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE---------- 103 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC----------
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC----------
Confidence 357777777776666677777777777777775 6655555677777777777776 7776655444432
Q ss_pred CCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcC---EEeccC
Q 048153 79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQ---TLNLSH 155 (257)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~---~L~l~~ 155 (257)
+++|++|++++|.+++ +|. +..+++|+ .|++++
T Consensus 104 ------------------------------------------l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 104 ------------------------------------------LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITD 139 (239)
T ss_dssp ------------------------------------------CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEES
T ss_pred ------------------------------------------CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCC
Confidence 5678888888888875 454 77777777 888888
Q ss_pred C-ccccCCCccccCccCCC-EEEccCCcccccCChhhhcCCCCCEEEccCCc-ccCCCChhhhhc-cCCCeeccccCccc
Q 048153 156 N-DLIGTIPSTFSNLKHIE-SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN-LSGKIPEWTAQF-ATFSESSYEGNHFL 231 (257)
Q Consensus 156 n-~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~l~l~~n~~~ 231 (257)
| .++++.+..|..+++|+ .|++++|+++...+..+.. ++|+.|++++|+ +.+..+..+..+ ++|+.+++++|++.
T Consensus 140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 8 78877777788888888 8888888887433334444 788888888884 776666777777 88888888888865
Q ss_pred ccCCCCCccCcccccccccC
Q 048153 232 CGLPLPICRSPVTMLKASTT 251 (257)
Q Consensus 232 ~~~~~~~~~~~l~~l~~~~~ 251 (257)
. +|.. ....++.|+++++
T Consensus 219 ~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 219 A-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp C-CCCT-TCTTCSEEECTTC
T ss_pred c-CChh-HhccCceeeccCc
Confidence 3 5544 5677777777765
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.7e-23 Score=177.63 Aligned_cols=241 Identities=18% Similarity=0.127 Sum_probs=194.2
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS 80 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~ 80 (257)
.++.+++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+... .+..+....+.
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4566677777 4665443 689999999999998889999999999999999999999888877654 47777777777
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEccc-CccccccCCCcCCCCCcCEEeccCCc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSC-NKLICHISPQIGNLTRIQTLNLSHND 157 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~-n~~~~~~~~~~~~l~~L~~L~l~~n~ 157 (257)
+..++... +..+..|+.+++..+.+..... ...+++|++|++++ +.+....+..|..+++|+.|++++|.
T Consensus 135 l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 135 LTVIPSGA-------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CSBCCTTT-------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCccChhh-------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 77655432 2345567777777777665433 23478899999998 45555555679999999999999999
Q ss_pred cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153 158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP 237 (257)
Q Consensus 158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 237 (257)
+++. | .+..+++|+.|++++|++++..|..+.++++|+.|++++|++.+..+..+..+++|+.|++++|.+..-.+..
T Consensus 208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 9954 3 5778899999999999999888899999999999999999999888999999999999999999987543343
Q ss_pred C-ccCcccccccccCCcc
Q 048153 238 I-CRSPVTMLKASTTNKE 254 (257)
Q Consensus 238 ~-~~~~l~~l~~~~~~~~ 254 (257)
+ ....++.|++++|.-.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 3 3478999999998743
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=9.3e-24 Score=173.25 Aligned_cols=243 Identities=18% Similarity=0.195 Sum_probs=170.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|......+.......+..+....+.
T Consensus 91 ~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 91 TNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp CEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC
T ss_pred CEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC
Confidence 468888888885 33 588888888888888888743 33 777788888888877543333322222223333333333
Q ss_pred CCCCcchhhhh-------------hhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC
Q 048153 81 LKPFETSFLVK-------------NIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR 147 (257)
Q Consensus 81 l~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 147 (257)
+.......... ..........++.+.+..+.+........+++|++|++++|.++...+ +..+++
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~ 244 (347)
T 4fmz_A 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQ 244 (347)
T ss_dssp CCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred cCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCC
Confidence 32222100000 001133344555566666555544444557889999999999885543 888999
Q ss_pred cCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeecccc
Q 048153 148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEG 227 (257)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~ 227 (257)
|++|++++|.+++. +.+..+++|+.|++++|++++. ..+..+++|+.|++++|.+.+..+..++.+++|+.+++++
T Consensus 245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 99999999999854 5688889999999999999853 4578899999999999999988888899999999999999
Q ss_pred CcccccCCCCCccCcccccccccCCcc
Q 048153 228 NHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 228 n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
|++.+..| ....+.++.|++++|..+
T Consensus 321 n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 321 NHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CccccccC-hhhhhccceeehhhhccc
Confidence 99887666 335589999999998753
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2e-24 Score=189.71 Aligned_cols=223 Identities=22% Similarity=0.137 Sum_probs=180.2
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCccccc--CChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGK--VPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSN 77 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~ 77 (257)
+.|++++|+..+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.+ ..+.. ..+..+...
T Consensus 331 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 331 KSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQ 407 (606)
T ss_dssp CEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECT
T ss_pred ceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECC
Confidence 57899999665444 578999999999999999865 3888999999999999999998754 33332 223333333
Q ss_pred CCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCc
Q 048153 78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND 157 (257)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 157 (257)
.+.+..... ......+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 408 ~n~l~~~~~----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 408 HSTLKRVTE----------------------------FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp TSEEESTTT----------------------------TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCccCCccC----------------------------hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 322221110 0111236889999999999998889999999999999999999
Q ss_pred ccc-CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 158 LIG-TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 158 l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
+++ ..|..+..+++|+.|++++|++++..|..+.++++|++|++++|++.+..|..+..+++|++|++++|.+. .+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 997 47889999999999999999999888889999999999999999999888999999999999999999977 5777
Q ss_pred CCcc--CcccccccccCCccc
Q 048153 237 PICR--SPVTMLKASTTNKEM 255 (257)
Q Consensus 237 ~~~~--~~l~~l~~~~~~~~~ 255 (257)
.+.. ..++.+++++|...+
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCC
T ss_pred hHhhhcccCcEEEccCCCccc
Confidence 6643 359999999987653
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=8.1e-24 Score=167.98 Aligned_cols=179 Identities=25% Similarity=0.219 Sum_probs=157.8
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+.+. ..++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 66 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------ 131 (272)
T 3rfs_A 66 RYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK------------ 131 (272)
T ss_dssp CEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred cEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc------------
Confidence 5799999999963 47999999999999999999877778899999999999999998766655443
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 132 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 132 ----------------------------------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 6779999999999998878788999999999999999998
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCcc
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICR 240 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 240 (257)
..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+. +++|+.+++..|.+.+.+|..++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 8888889999999999999999987777789999999999999988754 557888999999999988887744
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=9.5e-25 Score=176.71 Aligned_cols=222 Identities=21% Similarity=0.182 Sum_probs=111.4
Q ss_pred EEEccccccc-ccCCcccc-------CcccCcEeeCcCCcccccCChhh--hCCCCCCeeeccCceecccCCCCCcCCcc
Q 048153 2 ILDLSYNRLN-GSIPDLVD-------GLSQLSHLILAHNNLEGKVPVQL--CRLNQLQLLDLSNNNLHGLIPPCFDNTTL 71 (257)
Q Consensus 2 ~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 71 (257)
+|+|++|.+. ...|..+. ++++|++|++++|++++..|..+ ..+++|++|++++|.+++. |..+.....
T Consensus 67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~ 145 (312)
T 1wwl_A 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ 145 (312)
T ss_dssp HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT
T ss_pred hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH
Confidence 3566666663 33444333 56667777777776666566554 5666677777777666654 322211100
Q ss_pred cccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccc--cCCC--cCCC
Q 048153 72 HESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICH--ISPQ--IGNL 145 (257)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~--~~~~--~~~l 145 (257)
.....++.+++..+.+..... -..+++|++|++++|.+.+. .+.. +..+
T Consensus 146 -------------------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 146 -------------------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp -------------------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred -------------------------hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 000111222222222211110 01145566666666664432 1112 2556
Q ss_pred CCcCEEeccCCcccc---CCCccccCccCCCEEEccCCcccccCC-hhhhcCCCCCEEEccCCcccCCCChhhhhccCCC
Q 048153 146 TRIQTLNLSHNDLIG---TIPSTFSNLKHIESLDLSYNQLNGKIP-LQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS 221 (257)
Q Consensus 146 ~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 221 (257)
++|++|++++|.+++ .....+..+++|+.|++++|++++..| ..+..+++|++|++++|++. .+|..+. ++|+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 666666666666652 112223445566666666666664442 23344566666666666666 4454443 5666
Q ss_pred eeccccCcccccCCCCCccCcccccccccCCc
Q 048153 222 ESSYEGNHFLCGLPLPICRSPVTMLKASTTNK 253 (257)
Q Consensus 222 ~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (257)
.|++++|.+... |...-.+.++.|++++|..
T Consensus 278 ~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred EEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 666666665443 4422335666666666543
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.8e-23 Score=165.18 Aligned_cols=218 Identities=21% Similarity=0.233 Sum_probs=159.4
Q ss_pred EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCCC
Q 048153 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSSL 81 (257)
Q Consensus 3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~l 81 (257)
.+..+.++. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.... +..+....+.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 445555555 4565443 5799999999999987777899999999999999999887776655432 33444433333
Q ss_pred CCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153 82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT 161 (257)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 161 (257)
..+... ....+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 89 ~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 139 (276)
T 2z62_A 89 QSLALG-----------------------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (276)
T ss_dssp CEECTT-----------------------------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CccChh-----------------------------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee
Confidence 222110 012267788999999988877666788889999999999988864
Q ss_pred -CCccccCccCCCEEEccCCcccccCChhhhcCCCCC----EEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 162 -IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLA----VFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 162 -~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
.|..+..+++|+.|++++|++++..+..+..+++|+ .|++++|.+.+..+..+ ...+|++|++++|.+.. +|.
T Consensus 140 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~ 217 (276)
T 2z62_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKS-VPD 217 (276)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSC-CCT
T ss_pred cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceee-cCH
Confidence 478888889999999999998876666776666666 88999999885555444 34589999999998665 444
Q ss_pred C-C-ccCcccccccccCCcc
Q 048153 237 P-I-CRSPVTMLKASTTNKE 254 (257)
Q Consensus 237 ~-~-~~~~l~~l~~~~~~~~ 254 (257)
. + ..+.++.|++++|...
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBC
T ss_pred hHhcccccccEEEccCCccc
Confidence 3 3 3478899999987654
No 50
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.5e-23 Score=164.43 Aligned_cols=157 Identities=28% Similarity=0.311 Sum_probs=142.8
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+.|++++|++.+..+..|+++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------ 105 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH------------ 105 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc------------
Confidence 57999999999888889999999999999999999888888999999999999999998766655443
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 106 ----------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 106 ----------------------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 6779999999999997777788999999999999999998
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCC
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGK 209 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 209 (257)
+.+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888899999999999999999977777889999999999999999865
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.4e-23 Score=175.26 Aligned_cols=240 Identities=17% Similarity=0.138 Sum_probs=193.2
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS 80 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~ 80 (257)
.++.+++.+. .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.++.+.+..+... .+..+....+.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4566777777 5665554 789999999999998888999999999999999999998877776654 46777777777
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccC-ccccccCCCcCCCCCcCEEeccCCc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCN-KLICHISPQIGNLTRIQTLNLSHND 157 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~n~ 157 (257)
+..++... +..+..|+.+++..+.+..... ...+++|++|++++| .+....+..|..+++|++|++++|.
T Consensus 124 l~~~~~~~-------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 124 LTTIPNGA-------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp CSSCCTTT-------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred CCeeCHhH-------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 77655422 2345667777777776665433 233788999999994 4555555689999999999999999
Q ss_pred cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153 158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP 237 (257)
Q Consensus 158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 237 (257)
++. .| .+..+++|+.|++++|++++..+..+.++++|+.|++++|++.+..+..+..+++|+.|++++|.+....+..
T Consensus 197 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 197 LRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp CSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred Ccc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 994 44 4788899999999999999888899999999999999999999888889999999999999999987644444
Q ss_pred C-ccCcccccccccCCc
Q 048153 238 I-CRSPVTMLKASTTNK 253 (257)
Q Consensus 238 ~-~~~~l~~l~~~~~~~ 253 (257)
+ -...++.|++++|.-
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 3 348899999999874
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=190.88 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=96.3
Q ss_pred cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEc
Q 048153 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV 201 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 201 (257)
++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+.+|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 56888888888887777778888888888888888888777778888888888888888887666777888888888888
Q ss_pred cCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCC
Q 048153 202 AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTN 252 (257)
Q Consensus 202 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~ 252 (257)
++|++.+..+..+..+++|+.|++++|.+.. ++. .++++.+++++|.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGNK 392 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS---CCSCSEEEEESCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC---CCCcchhccCCCC
Confidence 8888876666677778888888888887653 221 3344445444443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=175.06 Aligned_cols=242 Identities=17% Similarity=0.164 Sum_probs=194.4
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS 80 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~ 80 (257)
+.+.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+... .+..+....+.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3578888888 5665554 589999999999997777789999999999999999998888777654 47777777787
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccc---cccccccceEEcccC-ccccccCCCcCCCCCcCEEeccCC
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ---GRVVSYLSGLDLSCN-KLICHISPQIGNLTRIQTLNLSHN 156 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~n 156 (257)
+..++... +..+..++.+++..+.+..... ...+++|++|++++| .+....+..+..+++|++|++++|
T Consensus 112 l~~~~~~~-------~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 112 LSNLSSSW-------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp CSSCCHHH-------HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCcCCHhH-------hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 77655432 2345567777777776655433 344789999999999 477677788999999999999999
Q ss_pred ccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC--------------------------
Q 048153 157 DLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-------------------------- 210 (257)
Q Consensus 157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------------------------- 210 (257)
.+++..+..+..+++|+.|++++|+++......+..+++|+.|++++|.+.+..
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 999888999999999999999999997443334566899999999999998643
Q ss_pred -----ChhhhhccCCCeeccccCcccccCCCCC--ccCcccccccccCCcc
Q 048153 211 -----PEWTAQFATFSESSYEGNHFLCGLPLPI--CRSPVTMLKASTTNKE 254 (257)
Q Consensus 211 -----~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~l~~~~~~~~ 254 (257)
|..+..+++|++|++++|.+. .+|... -.+.++.|++++|...
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 345677899999999999977 677764 3488999999999754
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=4e-23 Score=181.96 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=63.5
Q ss_pred ccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh
Q 048153 137 HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ 216 (257)
Q Consensus 137 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 216 (257)
..|..|..+++|+.|++++|.++++.|.+|..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|..+..
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 34455556666666666666666666666666666666666666666555556666666666666666666666666655
Q ss_pred c-cCCCeeccccCcccccCCC
Q 048153 217 F-ATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 217 ~-~~L~~l~l~~n~~~~~~~~ 236 (257)
+ ++|+.|++++|||.|+|..
T Consensus 565 l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CCTTCCEEECTTCCBCCSGGG
T ss_pred hhCcCCEEEeeCCCCcccCCc
Confidence 5 4566666666666666653
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=4.5e-23 Score=183.40 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=72.2
Q ss_pred cceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccc-----cCC----hhhhcCC
Q 048153 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG-----KIP----LQLVELN 194 (257)
Q Consensus 124 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~~~~~~~ 194 (257)
|++|++++|.+.+..+..|..+++|++|++++|.+++..+.++..+++|+.|++++|...+ .+| ..+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 5555555555554444455555555555555555555555555555555555555443221 111 1445566
Q ss_pred CCCEEEccCCcccCCCChhhhhccCCCeeccccCcccc-cCCCCC----ccCcccccccccCCccc
Q 048153 195 TLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC-GLPLPI----CRSPVTMLKASTTNKEM 255 (257)
Q Consensus 195 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~----~~~~l~~l~~~~~~~~~ 255 (257)
+|++|++++|.+.+..+..+..+++|+++++++|.+.. .++... ...+++.|+++.|....
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~ 395 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence 67777777777776666666777777777777775432 222211 11467777777776543
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.5e-24 Score=185.49 Aligned_cols=206 Identities=21% Similarity=0.221 Sum_probs=168.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccC--ChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKV--PVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSN 77 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~ 77 (257)
+.|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+ .+..+..
T Consensus 328 ~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l- 403 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF- 403 (570)
T ss_dssp CEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEEC-
T ss_pred CEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEc-
Confidence 4688999998866654 78999999999999998554 67888999999999999998876544 3221 2222322
Q ss_pred CCCCCCCcchhhhhhhhhhhcccchhhcccccccccccc---ccccccccceEEcccCccccccCCCcCCCCCcCEEecc
Q 048153 78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY---QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLS 154 (257)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~ 154 (257)
..+.+.... ....+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 404 ------------------------------~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 404 ------------------------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp ------------------------------TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ------------------------------cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 222221111 11236889999999999998889999999999999999
Q ss_pred CCccc-cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153 155 HNDLI-GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 155 ~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 233 (257)
+|.++ +..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.+..+..+..+++|+.+++++|++.|+
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99987 56888999999999999999999988899999999999999999999988888899999999999999999999
Q ss_pred CCCCCcc
Q 048153 234 LPLPICR 240 (257)
Q Consensus 234 ~~~~~~~ 240 (257)
||...+.
T Consensus 534 ~~~~~~~ 540 (570)
T 2z63_A 534 CPRIDYL 540 (570)
T ss_dssp TTTTHHH
T ss_pred CcchHHH
Confidence 9976543
No 57
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.91 E-value=9.3e-24 Score=174.22 Aligned_cols=180 Identities=25% Similarity=0.242 Sum_probs=153.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhh-CCCCCCeeeccCceecccCCCCCcCCcccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~ 79 (257)
++++++++++. .+|..+. ..++.|++++|++++..+..|. .+++|++|++++|.++++.+..+..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 86 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence 36889999998 4665543 4689999999999987777787 8999999999999998877665543
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI 159 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (257)
+++|++|++++|.++...+..|..+++|+.|++++|.++
T Consensus 87 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 87 -----------------------------------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 678999999999999888888999999999999999999
Q ss_pred cCCCccccCccCCCEEEccCCcccccCChhh---hcCCCCCEEEccCCcccCCCChhhhhccC--CCeeccccCcccccC
Q 048153 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQL---VELNTLAVFSVAHNNLSGKIPEWTAQFAT--FSESSYEGNHFLCGL 234 (257)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~ 234 (257)
.+.+..|..+++|+.|++++|++++..+..+ ..+++|+.|+|++|++.+..+..+..++. ++.+++++|+|.|+|
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 8889999999999999999999995444444 56899999999999999666677888877 489999999999987
Q ss_pred C
Q 048153 235 P 235 (257)
Q Consensus 235 ~ 235 (257)
.
T Consensus 206 ~ 206 (361)
T 2xot_A 206 K 206 (361)
T ss_dssp H
T ss_pred C
Confidence 5
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=5.4e-25 Score=178.14 Aligned_cols=223 Identities=15% Similarity=0.151 Sum_probs=165.8
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCccc-ccCChhhh-------CCCCCCeeeccCceecccCCCCC--cC-Cc
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE-GKVPVQLC-------RLNQLQLLDLSNNNLHGLIPPCF--DN-TT 70 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~-~~ 70 (257)
+|++++|.+ .+|..+... |+.|++++|.+. ...|..+. .+++|++|++++|.+++..|..+ .. ..
T Consensus 47 ~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 47 YLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp THHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred eEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 456788888 567655544 999999999995 45666555 79999999999999997777653 22 22
Q ss_pred ccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCE
Q 048153 71 LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQT 150 (257)
Q Consensus 71 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 150 (257)
+..+....+.+...+.... . .....+++|++|++++|.+.+..+..+..+++|++
T Consensus 123 L~~L~Ls~N~l~~~~~~~~------------------------~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLA------------------------E-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp CSEEEEESCBCSSSSSHHH------------------------H-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred ccEEEccCCCCcchhHHHH------------------------H-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 4444444444333211000 0 00001378999999999999888899999999999
Q ss_pred EeccCCccccC--CCccc--cCccCCCEEEccCCccccc---CChhhhcCCCCCEEEccCCcccCCCC-hhhhhccCCCe
Q 048153 151 LNLSHNDLIGT--IPSTF--SNLKHIESLDLSYNQLNGK---IPLQLVELNTLAVFSVAHNNLSGKIP-EWTAQFATFSE 222 (257)
Q Consensus 151 L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~ 222 (257)
|++++|.+.+. .+..+ ..+++|+.|++++|++++. ....+..+++|+.|++++|++.+..| ..+..+++|+.
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 99999997654 23333 7889999999999999832 12334677999999999999998775 45566899999
Q ss_pred eccccCcccccCCCCCccCcccccccccCCccc
Q 048153 223 SSYEGNHFLCGLPLPICRSPVTMLKASTTNKEM 255 (257)
Q Consensus 223 l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (257)
|++++|.+. .+|..+. +.++.|++++|....
T Consensus 258 L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDR 288 (312)
T ss_dssp EECTTSCCS-SCCSSCC-SEEEEEECCSSCCCS
T ss_pred EECCCCccC-hhhhhcc-CCceEEECCCCCCCC
Confidence 999999987 7887766 899999999997653
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.5e-24 Score=192.01 Aligned_cols=222 Identities=18% Similarity=0.218 Sum_probs=129.6
Q ss_pred CEEEcccccccc-----------------cCCcccc--CcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCce-ecc
Q 048153 1 MILDLSYNRLNG-----------------SIPDLVD--GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNN-LHG 60 (257)
Q Consensus 1 ~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 60 (257)
++|+|++|++++ .+|+.++ ++++|++|++++|.+.+.+|..|+.+++|++|++++|+ +++
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 578999999997 3788877 99999999999999888899999999999999999997 776
Q ss_pred -cCCCCCcCC--------cccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEccc
Q 048153 61 -LIPPCFDNT--------TLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSC 131 (257)
Q Consensus 61 -~~~~~~~~~--------~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 131 (257)
..|..+... .+..+....+.+..++.. ..+..+..|+.+++..+.+........+++|++|++++
T Consensus 531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~------~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS------ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH------HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh------hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence 444433222 455666666666544330 01223334455555555444322223355666666666
Q ss_pred CccccccCCCcCCCCC-cCEEeccCCccccCCCccccCccC--CCEEEccCCcccccCChh---hh--cCCCCCEEEccC
Q 048153 132 NKLICHISPQIGNLTR-IQTLNLSHNDLIGTIPSTFSNLKH--IESLDLSYNQLNGKIPLQ---LV--ELNTLAVFSVAH 203 (257)
Q Consensus 132 n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~---~~--~~~~L~~L~L~~ 203 (257)
|.+. .+|..+..+++ |+.|++++|.++ ..|..+...+. |+.|++++|++++..|.. +. ..++|+.|++++
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 6666 55555666666 666666666666 34444443332 555555555554433211 11 122444555555
Q ss_pred CcccCCCChhh-hhccCCCeeccccCccc
Q 048153 204 NNLSGKIPEWT-AQFATFSESSYEGNHFL 231 (257)
Q Consensus 204 n~l~~~~~~~~-~~~~~L~~l~l~~n~~~ 231 (257)
|.+. .+|..+ ..+++|+.|++++|.+.
T Consensus 683 N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 683 NEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp SCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 5544 333222 23444555555554443
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=180.59 Aligned_cols=82 Identities=20% Similarity=0.226 Sum_probs=67.7
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++||+++|+++ .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+... .+..+..+.+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57999999999 5676665 899999999999998788899999999999999999998878776654 4666777666
Q ss_pred CCCCCc
Q 048153 80 SLKPFE 85 (257)
Q Consensus 80 ~l~~~~ 85 (257)
.+..++
T Consensus 80 ~l~~lp 85 (520)
T 2z7x_B 80 KLVKIS 85 (520)
T ss_dssp CCCEEE
T ss_pred ceeecC
Confidence 665443
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=7.5e-23 Score=185.94 Aligned_cols=255 Identities=19% Similarity=0.197 Sum_probs=159.1
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccC-ChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKV-PVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNG 78 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~ 78 (257)
++|||++|.+++..|..|+++++|++|++++|...+.+ |.+|+.+++|++|++++|.+++..|..+..+. +..+....
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 46777777777666666777777777777766433233 55666666677777777766666565554433 33344333
Q ss_pred CCCCC--Ccchhhh----------------h--hhhhhhcccchhhccccccccccccccc-------------------
Q 048153 79 SSLKP--FETSFLV----------------K--NIYIYREKKILEIFEFTTKNIAYTYQGR------------------- 119 (257)
Q Consensus 79 ~~l~~--~~~~~~~----------------~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------- 119 (257)
+.+.. .....+. . ....+..+..|+.+++..+.+.......
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 33321 0000000 0 0011223333444444433322110000
Q ss_pred ---------------cccccceEEcccCccccccCCCcC------------------------------------C--CC
Q 048153 120 ---------------VVSYLSGLDLSCNKLICHISPQIG------------------------------------N--LT 146 (257)
Q Consensus 120 ---------------~~~~L~~L~ls~n~~~~~~~~~~~------------------------------------~--l~ 146 (257)
....|++|++++|.+++..+..+. + .+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 001266777777755433332221 1 25
Q ss_pred CcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccc
Q 048153 147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE 226 (257)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~ 226 (257)
+|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 68888888888887778888888899999999999987778888888999999999999987778888889999999999
Q ss_pred cCcccccCCCCC-ccCcccccccccCCccc
Q 048153 227 GNHFLCGLPLPI-CRSPVTMLKASTTNKEM 255 (257)
Q Consensus 227 ~n~~~~~~~~~~-~~~~l~~l~~~~~~~~~ 255 (257)
+|.+..-.+..+ ..+.++.|++++|....
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 998765444444 34789999999887543
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=7.5e-23 Score=167.86 Aligned_cols=242 Identities=18% Similarity=0.224 Sum_probs=165.7
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|++++..+ ++.+++|++|++++|.++. + +.+..+++|++|++++|.+.+..+ ......+..+....+.
T Consensus 69 ~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 69 EYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred cEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence 579999999995443 9999999999999999984 3 468999999999999999986544 2222334444444442
Q ss_pred -CCCCcchhhh-------------hhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCC
Q 048153 81 -LKPFETSFLV-------------KNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLT 146 (257)
Q Consensus 81 -l~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~ 146 (257)
.......... ........+..++.+++..+.+........+++|+++++++|.+....+ +..++
T Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 221 (347)
T 4fmz_A 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMT 221 (347)
T ss_dssp TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCC
Confidence 2211110000 0011133344555555555555444444446667777777777664433 67778
Q ss_pred CcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccc
Q 048153 147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE 226 (257)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~ 226 (257)
+|++|++++|.+++..+ +..+++|+.|++++|.+++ . ..+..+++|+.|++++|++.+. ..+..+++|+.++++
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence 88888888888885443 7778888888888888874 3 4577788888888888888753 346778889999999
Q ss_pred cCcccccCCCCC-ccCcccccccccCCccc
Q 048153 227 GNHFLCGLPLPI-CRSPVTMLKASTTNKEM 255 (257)
Q Consensus 227 ~n~~~~~~~~~~-~~~~l~~l~~~~~~~~~ 255 (257)
+|++....|..+ ..+.++.|++++|....
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 988776655544 34788888888887543
No 63
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.90 E-value=6.2e-23 Score=157.78 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=110.4
Q ss_pred cEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccchhh
Q 048153 25 SHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEI 104 (257)
Q Consensus 25 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (257)
+.++++++.++ .+|..+. ++++.|++++|.++++.+..+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------ 54 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------ 54 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence 45666666666 4454443 46777777777776655544432
Q ss_pred ccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccc
Q 048153 105 FEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG 184 (257)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 184 (257)
+++|++|++++|.+++..|..|.++++|++|++++|.++.+.+..|..+++|+.|++++|++++
T Consensus 55 ----------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 55 ----------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp ----------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 4567777777777776667777777777777777777776666667777777777777777776
Q ss_pred cCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 185 KIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 185 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 6667777777777777777777766666677777777788888877776653
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.6e-22 Score=161.90 Aligned_cols=203 Identities=19% Similarity=0.165 Sum_probs=162.9
Q ss_pred cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhh
Q 048153 17 LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIY 96 (257)
Q Consensus 17 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (257)
.++.+++++.++++++.++ .+|..+. +++++|++++|.+++..+..+....
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~-------------------------- 55 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYT-------------------------- 55 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCT--------------------------
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCC--------------------------
Confidence 3678899999999999998 5665554 5899999999999877665544322
Q ss_pred hcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEE
Q 048153 97 REKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 176 (257)
.++.+++..+.+........+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|+.|+
T Consensus 56 ----~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 56 ----RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp ----TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred ----CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 22333333333333222234788999999999998 6677889999999999999999988888999999999999
Q ss_pred ccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCcc
Q 048153 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNKE 254 (257)
Q Consensus 177 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~~ 254 (257)
+++|++++..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+. .+|..+ -...++.+++++|.-.
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9999999776777889999999999999999666667788999999999999977 577666 3467899999988643
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.2e-22 Score=176.86 Aligned_cols=250 Identities=16% Similarity=0.131 Sum_probs=170.4
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
+++|+++|++++ +|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+... .+..+..+.+
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 479999999995 665554 899999999999998888899999999999999999999988877664 4667777777
Q ss_pred CCCCCcchhhhh---------------hhhhhhcccchhhccccccccccccccc-------------------------
Q 048153 80 SLKPFETSFLVK---------------NIYIYREKKILEIFEFTTKNIAYTYQGR------------------------- 119 (257)
Q Consensus 80 ~l~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------- 119 (257)
.+..++...... ....+..+..++.+++..+.+.......
T Consensus 111 ~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 111 RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp CCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred cCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCccc
Confidence 665544321000 0012223333444333333221100000
Q ss_pred --------------------------------------------------------------------------------
Q 048153 120 -------------------------------------------------------------------------------- 119 (257)
Q Consensus 120 -------------------------------------------------------------------------------- 119 (257)
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence
Q ss_pred ---cccccceEEcccCccccccCCCc-----------------------------------------------------C
Q 048153 120 ---VVSYLSGLDLSCNKLICHISPQI-----------------------------------------------------G 143 (257)
Q Consensus 120 ---~~~~L~~L~ls~n~~~~~~~~~~-----------------------------------------------------~ 143 (257)
...+|++|++++|.+.+.+|..+ .
T Consensus 271 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 00145666666666665555443 5
Q ss_pred CCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc--CChhhhcCCCCCEEEccCCcccCCCCh-hhhhccCC
Q 048153 144 NLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK--IPLQLVELNTLAVFSVAHNNLSGKIPE-WTAQFATF 220 (257)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L 220 (257)
.+++|++|++++|.+++..|..+..+++|+.|++++|++++. .|..+..+++|+.|++++|++.+.+|. .+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 567788888888888877777788888888888888888742 234567778888888888888764553 46667888
Q ss_pred CeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153 221 SESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 221 ~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
+++++++|.+....|..+. +.++.|++++|...
T Consensus 431 ~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM 463 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC
T ss_pred CEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc
Confidence 8888888887766665433 67888888888654
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=168.24 Aligned_cols=195 Identities=19% Similarity=0.152 Sum_probs=109.1
Q ss_pred CEEEcccccccccCCccc--cCcccCcEeeCcCCcccccCC----hhhhCCCCCCeeeccCceecccCCCCCcCCccccc
Q 048153 1 MILDLSYNRLNGSIPDLV--DGLSQLSHLILAHNNLEGKVP----VQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHES 74 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~ 74 (257)
++|++++|++.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~------ 167 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA------ 167 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC------
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc------
Confidence 356677777766666665 666777777777776664333 23345666777777777766555444433
Q ss_pred ccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccc---cc-CCCcCCCCCcCE
Q 048153 75 YSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC---HI-SPQIGNLTRIQT 150 (257)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~---~~-~~~~~~l~~L~~ 150 (257)
+++|++|++++|.+.+ .. +..+..+++|++
T Consensus 168 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 168 ----------------------------------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp ----------------------------------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred ----------------------------------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 4556666666665432 11 122345566666
Q ss_pred EeccCCccccCCCc----cccCccCCCEEEccCCcccccCChhhhcC---CCCCEEEccCCcccCCCChhhhhccCCCee
Q 048153 151 LNLSHNDLIGTIPS----TFSNLKHIESLDLSYNQLNGKIPLQLVEL---NTLAVFSVAHNNLSGKIPEWTAQFATFSES 223 (257)
Q Consensus 151 L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l 223 (257)
|++++|.++. .+. .+..+++|+.|++++|++++..|..+..+ ++|++|++++|++. .+|..+ .++|++|
T Consensus 202 L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L 277 (310)
T 4glp_A 202 LALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVL 277 (310)
T ss_dssp CBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCE
T ss_pred EECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEE
Confidence 6666666652 121 23455666666666666665445444443 46666666666666 445443 2566666
Q ss_pred ccccCcccccCCCCCccCcccccccccCC
Q 048153 224 SYEGNHFLCGLPLPICRSPVTMLKASTTN 252 (257)
Q Consensus 224 ~l~~n~~~~~~~~~~~~~~l~~l~~~~~~ 252 (257)
++++|.+.. +|.....+.++.|++++|.
T Consensus 278 ~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred ECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 666666553 2332233556666666654
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.3e-23 Score=182.47 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=76.5
Q ss_pred ccccceEEcccCc-cccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChh-hhcCCCCCE
Q 048153 121 VSYLSGLDLSCNK-LICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQ-LVELNTLAV 198 (257)
Q Consensus 121 ~~~L~~L~ls~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~ 198 (257)
+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+. ..+.. +..+++|+.
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccE
Confidence 5566667776666 33333345666667777777777666666666666666777777766665 33333 244667777
Q ss_pred EEccCCcccCCC--C-hhhhhccCCCeeccccCcccccCCCCC-----ccCcccccccccCC
Q 048153 199 FSVAHNNLSGKI--P-EWTAQFATFSESSYEGNHFLCGLPLPI-----CRSPVTMLKASTTN 252 (257)
Q Consensus 199 L~L~~n~l~~~~--~-~~~~~~~~L~~l~l~~n~~~~~~~~~~-----~~~~l~~l~~~~~~ 252 (257)
|++++|++.+.. + .....+++|+.+++++|.+.+..+..+ ....++.++++++.
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 777777666431 1 122235666777777766554333222 22466666666665
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.2e-22 Score=173.01 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=75.8
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.+.+. +.+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 44555555555555432 245556666666666666664433 5566667777777776664322 56667777777
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
+++|++.+..+ +..+++|+.|++++|.+....|. ...+.++.|++++|...
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGG-GGCTTCCEEECCSSCCC
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchhh-ccCccCCEeECCCCccC
Confidence 77777764433 55677777777777776654441 24467777777776543
No 69
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=155.87 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=81.0
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 45566777777777666666677777777777777777766666677777777777777777766566667777777777
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+++|++.+..|..+..+++|+.+++++|+|.|+|+
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77777776666667777777777777777777665
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=177.03 Aligned_cols=223 Identities=20% Similarity=0.168 Sum_probs=168.3
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~ 79 (257)
++|++++|++++..+..|+++++|++|++++|++.+..+..|+.+++|++|++++|.+++..+..+..+. +..+....+
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 4688888888877777888888888888888888877777888888888888888888877766665433 333444333
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccc-ccCCCcCCCCCcCEEeccCCcc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSHNDL 158 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~n~l 158 (257)
.+..++.. ....+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 111 ~l~~l~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 111 NLASLENF-----------------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CCCCSTTC-----------------------------SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccccCCCc-----------------------------cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 33322210 01226789999999998876 3588889999999999999999
Q ss_pred ccCCCccccCccCC----CEEEccCCcccccCChhhhcCCCCCEEEccCC------------------------------
Q 048153 159 IGTIPSTFSNLKHI----ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN------------------------------ 204 (257)
Q Consensus 159 ~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n------------------------------ 204 (257)
++..+..++.+.+| ..+++++|.+++..+..+... +|+.|++++|
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 88778888888888 889999999987777666554 7888888776
Q ss_pred ----------------------------cccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153 205 ----------------------------NLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 205 ----------------------------~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
.+.+..|..+..+++|+.+++++|.+. .+|..+....++.|++++|...
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~ 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCccc
Confidence 334456677778899999999999866 5776664448999999888654
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=9.6e-22 Score=166.86 Aligned_cols=235 Identities=19% Similarity=0.177 Sum_probs=134.6
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++.. ......+..+....+.
T Consensus 45 ~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 45 TSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp CEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC
T ss_pred CEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc
Confidence 4678888888854 4 577888888888888887753 3 677777888888888777642 2122234455555554
Q ss_pred CCCCcchhhhhhhh-----------hhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcC
Q 048153 81 LKPFETSFLVKNIY-----------IYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQ 149 (257)
Q Consensus 81 l~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~ 149 (257)
+..++........+ .......++.+++..+..........+++|++|++++|.+++. | +..+++|+
T Consensus 118 l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~ 194 (457)
T 3bz5_A 118 LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D--VSQNKLLN 194 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C--CTTCTTCC
T ss_pred CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-c--cccCCCCC
Confidence 44432100000000 0112223333344333111111223356677777777777643 3 66677777
Q ss_pred EEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-------CCCe
Q 048153 150 TLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-------TFSE 222 (257)
Q Consensus 150 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-------~L~~ 222 (257)
.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++.+..+..+..+. +|+.
T Consensus 195 ~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 195 RLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp EEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred EEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence 777777777754 25666777777777777775 44 66677777777777777765444433332 4455
Q ss_pred eccccCcccccCCCCCccCcccccccccCC
Q 048153 223 SSYEGNHFLCGLPLPICRSPVTMLKASTTN 252 (257)
Q Consensus 223 l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~ 252 (257)
+++++|++.+.+|...| +.++.|++++|.
T Consensus 269 L~l~~n~~~~~~~~~~l-~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 269 IDLTHNTQLIYFQAEGC-RKIKELDVTHNT 297 (457)
T ss_dssp CCCTTCTTCCEEECTTC-TTCCCCCCTTCT
T ss_pred EECCCCccCCccccccc-ccCCEEECCCCc
Confidence 55556655555553222 556666665554
No 72
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.89 E-value=4.3e-22 Score=154.02 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=80.2
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|+
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 455677777777776555556677777777777777777666666677777777777777777 5666667777777777
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+++|++.+..+..+..+++|+.+++++|+|.|+|+
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 77777775555566667777777777777777665
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=7.9e-22 Score=168.03 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=105.5
Q ss_pred chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCC
Q 048153 101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180 (257)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 180 (257)
.++.+++..+.+........+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence 444455555544443334456788888898888875544 7788888999998888886544 777888889999988
Q ss_pred cccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE 254 (257)
Q Consensus 181 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (257)
++++..+ +..+++|+.|++++|++.+..| +..+++|+++++++|++.+. +.-...+.++.|++++|...
T Consensus 298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC
Confidence 8885433 6778888999999988886655 66788889999988887653 32224478888888887654
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=6.2e-22 Score=159.84 Aligned_cols=188 Identities=21% Similarity=0.261 Sum_probs=135.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+.. ++ .++.+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +.
T Consensus 44 ~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~------------- 104 (308)
T 1h6u_A 44 TTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-SA-IA------------- 104 (308)
T ss_dssp CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-GG-GT-------------
T ss_pred CEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-hh-hc-------------
Confidence 467777777774 34 47777788888888887774333 77777788888887777643 21 11
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
.+..++.+++..+.+........+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 105 -----------------~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 105 -----------------GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp -----------------TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred -----------------CCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 122233333333333333223347889999999999885543 7888999999999999986
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 232 (257)
..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++.+..+ +..+++|+.+++++|++.+
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 444 7888999999999999985433 7888999999999999985543 7789999999999999865
No 75
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-21 Score=149.47 Aligned_cols=176 Identities=22% Similarity=0.179 Sum_probs=142.1
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL 81 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l 81 (257)
.++.+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------- 74 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK------------- 74 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-------------
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC-------------
Confidence 5677888877 445333 468999999999998766777888999999999999988665544432
Q ss_pred CCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153 82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT 161 (257)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 161 (257)
+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 75 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 115 (208)
T 2o6s_A 75 ---------------------------------------LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115 (208)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ---------------------------------------CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCccc
Confidence 56789999999999877777788899999999999999977
Q ss_pred CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCc
Q 048153 162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPIC 239 (257)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 239 (257)
.+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+. +++|+.++++.|.+.+.+|..+.
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCc
Confidence 777788889999999999999866666678889999999999987643 56788888888988888887663
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=8.5e-22 Score=151.44 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=151.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+.++++++.++ .+|..+. ++++.|++++|.++...+..|..+++|++|++++|.+++..|..+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 35788999998 5665554 78999999999999888888999999999999999999877776654
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+++|++|++++|.++...+..|..+++|+.|++++|.+++
T Consensus 79 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 79 ----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp ----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 6789999999999997777778999999999999999999
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCC-hhhhhccCCCeeccccCcccccCCCCCc
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP-EWTAQFATFSESSYEGNHFLCGLPLPIC 239 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 239 (257)
..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+...-. .++.. .++.-.+......|.-|...-
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~--~l~~~~~~~~~~~C~~P~~l~ 196 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLAD--YLHTNPIETSGARCTSPRRLA 196 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHH--HHHHCCCBCSCCBEEESGGGT
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHH--HHHhCCCCccCCCcCCchHHc
Confidence 989999999999999999999997777788999999999999999975332 11111 111112233444566665554
Q ss_pred cCcccccccc
Q 048153 240 RSPVTMLKAS 249 (257)
Q Consensus 240 ~~~l~~l~~~ 249 (257)
...+..++.+
T Consensus 197 g~~l~~l~~~ 206 (220)
T 2v9t_B 197 NKRIGQIKSK 206 (220)
T ss_dssp TCBGGGSCGG
T ss_pred CCchhhCCHH
Confidence 5555555443
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.6e-22 Score=175.55 Aligned_cols=82 Identities=26% Similarity=0.287 Sum_probs=56.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~ 79 (257)
++|++++|++++..|..|+++++|++|++++|++.+..|..|+.+++|++|++++|.+++..+..+..+ .+..+....+
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 467888888877777777888888888888888777777777777788888888887776655534333 3444444444
Q ss_pred CCC
Q 048153 80 SLK 82 (257)
Q Consensus 80 ~l~ 82 (257)
.+.
T Consensus 109 ~l~ 111 (549)
T 2z81_A 109 PYQ 111 (549)
T ss_dssp CCS
T ss_pred ccc
Confidence 443
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=9.1e-22 Score=173.27 Aligned_cols=241 Identities=22% Similarity=0.219 Sum_probs=157.5
Q ss_pred CEEEccccccc--ccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCC-CCcCCc-cccccc
Q 048153 1 MILDLSYNRLN--GSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPP-CFDNTT-LHESYS 76 (257)
Q Consensus 1 ~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~-l~~~~~ 76 (257)
+.|++++|.+. +..+..+..+.+|+++++..+.... .+..+..+++|+.+++.++......+. .+.... +..+..
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred ccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccc
Confidence 46788888876 3456666778888888888888773 455677788888888887776544332 222222 233333
Q ss_pred CCCCCCCCcchhhhhhhhhhhcccchhhcccccccccc-c--cccccccccceEEcccCccccccCCCcCCCCCcCEEec
Q 048153 77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY-T--YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNL 153 (257)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 153 (257)
..+.+...... .......++.+.+..+.... . .....+++|++|++++|.+++..|..|.++++|+.|++
T Consensus 453 s~n~l~~~~~~-------~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 453 SHTHTRVAFNG-------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TTSCCEECCTT-------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccc-------ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 33333222211 11122334444444433211 1 11233678999999999998888888999999999999
Q ss_pred cCCccccCCCccccCccCCCEEEccCCcccccCChhhhcC-CCCCEEEccCCcccCCCC-hhhh-hccCCCeeccccCcc
Q 048153 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVEL-NTLAVFSVAHNNLSGKIP-EWTA-QFATFSESSYEGNHF 230 (257)
Q Consensus 154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~-~~~~L~~l~l~~n~~ 230 (257)
++|.+++..+.+|..+++|+.|++++|++++..|..+..+ ++|+.|++++|.+...-. .++. .+..-..........
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~ 605 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 605 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCc
Confidence 9999998888888888999999999999988778888777 589999999998875322 1111 121112222233456
Q ss_pred cccCCCCCccCcccccccc
Q 048153 231 LCGLPLPICRSPVTMLKAS 249 (257)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~~ 249 (257)
.|.-|...-..++..++++
T Consensus 606 ~C~~P~~~~g~~l~~~~~~ 624 (635)
T 4g8a_A 606 ECATPSDKQGMPVLSLNIT 624 (635)
T ss_dssp BBCSSTTTTTCBGGGCCCC
T ss_pred eeCCchHHCCCEeeeeccC
Confidence 7888888777788777763
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-22 Score=172.93 Aligned_cols=217 Identities=19% Similarity=0.199 Sum_probs=172.7
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|+|++|.+++..| |+.+++|++|++++|.+++.. ..++|++|++++|.+++..+..+ ..+..+....+.
T Consensus 61 ~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~~l--~~L~~L~L~~N~ 131 (487)
T 3oja_A 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNK 131 (487)
T ss_dssp CEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEECCC--SSCEEEECCSSC
T ss_pred CEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcccc--CCCCEEECCCCC
Confidence 579999999997665 999999999999999998543 23799999999999988776654 345666777777
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccc---cccccceEEcccCccccccCCCcCCCCCcCEEeccCCc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR---VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND 157 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 157 (257)
+.......+ ..+..++.++++.+.+....... .+++|++|++++|.+++..+ ...+++|+.|++++|.
T Consensus 132 l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 132 ITMLRDLDE-------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp CCSGGGBCG-------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSC
T ss_pred CCCCCchhh-------cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCC
Confidence 665533222 23456677777777665543222 36899999999999986643 3468999999999999
Q ss_pred cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCccc-CCCChhhhhccCCCeeccc-------cCc
Q 048153 158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS-GKIPEWTAQFATFSESSYE-------GNH 229 (257)
Q Consensus 158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~l~l~-------~n~ 229 (257)
+++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++ .++
T Consensus 203 l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 280 (487)
T 3oja_A 203 LAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (487)
T ss_dssp CCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSS
T ss_pred CCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCc
Confidence 996544 5889999999999999999 46777888999999999999998 5677888888999999987 888
Q ss_pred ccccCCCC
Q 048153 230 FLCGLPLP 237 (257)
Q Consensus 230 ~~~~~~~~ 237 (257)
+.|.++..
T Consensus 281 ~~c~~~~~ 288 (487)
T 3oja_A 281 EECTVPTL 288 (487)
T ss_dssp CCCSSTTC
T ss_pred ccccCCcc
Confidence 88888754
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=5.4e-23 Score=166.77 Aligned_cols=234 Identities=18% Similarity=0.156 Sum_probs=185.2
Q ss_pred EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK 82 (257)
Q Consensus 3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~ 82 (257)
.+++.+.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ ......+..+....+.+.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc
Confidence 4566666665555667788899999999999998888899999999999999999987655 222234556666666554
Q ss_pred CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC
Q 048153 83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI 162 (257)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 162 (257)
.++ ....++.+.+..+.+....... +++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 94 ~l~------------~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 94 ELL------------VGPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp EEE------------ECTTCCEEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred ccc------------CCCCcCEEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 333 2245667777777665554433 678999999999999888888999999999999999999877
Q ss_pred Cccc-cCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-cc
Q 048153 163 PSTF-SNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CR 240 (257)
Q Consensus 163 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~ 240 (257)
+..+ ..+++|+.|++++|++++. +. ...+++|+.|++++|++.+ +|..+..+++|+.|++++|.+. .+|..+ ..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 7776 4789999999999999854 32 3358999999999999995 5555889999999999999977 467665 45
Q ss_pred CcccccccccCCcc
Q 048153 241 SPVTMLKASTTNKE 254 (257)
Q Consensus 241 ~~l~~l~~~~~~~~ 254 (257)
+.++.|++++|...
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 89999999999765
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.2e-21 Score=149.30 Aligned_cols=157 Identities=25% Similarity=0.268 Sum_probs=135.2
Q ss_pred CcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccchh
Q 048153 24 LSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILE 103 (257)
Q Consensus 24 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (257)
-+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~----------------------------------- 50 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDE----------------------------------- 50 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcc-----------------------------------
Confidence 467888888887 455444 358999999999998765554433
Q ss_pred hccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccc
Q 048153 104 IFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 183 (257)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 51 -----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 51 -----------------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp -----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 677999999999999777777899999999999999999887778899999999999999999
Q ss_pred ccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 184 GKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 184 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+..+..+..+++|++|++++|++.+..+..+..+++|+.+++++|++.|.+|
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 7666678899999999999999997777778899999999999999999876
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8e-22 Score=153.53 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=144.7
Q ss_pred CEEEccccc-ccccCCccccCcccCcEeeCcC-CcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCC
Q 048153 1 MILDLSYNR-LNGSIPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNG 78 (257)
Q Consensus 1 ~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~ 78 (257)
++|++++|+ ++...+..|+++++|++|++++ |.++...+..|..+++|++|++++|.+++. |. +..
T Consensus 58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-p~-~~~---------- 125 (239)
T 2xwt_C 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PD-LTK---------- 125 (239)
T ss_dssp CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-CC-CTT----------
T ss_pred cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-cc-ccc----------
Confidence 579999997 9877778999999999999998 999977778899999999999999999763 32 222
Q ss_pred CCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccc---eEEcccC-ccccccCCCcCCCCCcC-EEec
Q 048153 79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLS---GLDLSCN-KLICHISPQIGNLTRIQ-TLNL 153 (257)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~~~~~~~~~~~~l~~L~-~L~l 153 (257)
+++|+ +|++++| .+++..+..|..+++|+ .|++
T Consensus 126 ------------------------------------------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 126 ------------------------------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp ------------------------------------------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ------------------------------------------ccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 33444 9999999 89877778899999999 9999
Q ss_pred cCCccccCCCccccCccCCCEEEccCCc-ccccCChhhhcC-CCCCEEEccCCcccCCCChhhhhccCCCeeccccCc
Q 048153 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVEL-NTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNH 229 (257)
Q Consensus 154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 229 (257)
++|.++.+.+..+.. ++|+.|++++|+ ++...+..+..+ ++|+.|++++|++.+ +|.. .+++|+.|+++++.
T Consensus 164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 999999666666666 899999999995 986667788889 999999999999984 4543 58899999998874
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=150.62 Aligned_cols=191 Identities=21% Similarity=0.304 Sum_probs=150.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCC-hhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~ 79 (257)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.++++.+..+..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46899999999 4665553 467899999999997754 45889999999999999998877665544
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI 159 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (257)
+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 80 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 80 -----------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred -----------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 677999999999999888888999999999999999999
Q ss_pred cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCCh-hhhhccCCCeec-cccCcccccCCCC
Q 048153 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE-WTAQFATFSESS-YEGNHFLCGLPLP 237 (257)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~l~-l~~n~~~~~~~~~ 237 (257)
+..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|.+....+- ++... ++.-. ..+++ .|..|..
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~--~~~~~~~~~~~-~C~~P~~ 195 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEW--LRKKRIVTGNP-RCQKPYF 195 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHH--HHHSCCBCCCC-EEEESGG
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHH--HHhcCccccCC-ccCCChH
Confidence 98899999999999999999999987789999999999999999999865542 22111 11111 13333 5666655
Q ss_pred CccCcccccccc
Q 048153 238 ICRSPVTMLKAS 249 (257)
Q Consensus 238 ~~~~~l~~l~~~ 249 (257)
.-..++..+..+
T Consensus 196 l~g~~l~~l~~~ 207 (220)
T 2v70_A 196 LKEIPIQDVAIQ 207 (220)
T ss_dssp GTTEEGGGSCGG
T ss_pred HCCCChhhCCHH
Confidence 444455555443
No 84
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.2e-20 Score=160.13 Aligned_cols=198 Identities=17% Similarity=0.137 Sum_probs=125.6
Q ss_pred cccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhh
Q 048153 11 NGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLV 90 (257)
Q Consensus 11 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 90 (257)
.+..+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+++.. ......+..+....+.+..++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~----- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD----- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-----
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-----
Confidence 334555788999999999999999964 5 6899999999999999998763 222334666666666666542
Q ss_pred hhhhhhhcccchhhccccccccccccccccccccceEEcccCcccccc-------------------CCCcCCCCCcCEE
Q 048153 91 KNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHI-------------------SPQIGNLTRIQTL 151 (257)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~-------------------~~~~~~l~~L~~L 151 (257)
...+..++.+++..+.+.... ...+++|++|++++|.+++.. ...+..+++|++|
T Consensus 102 -----~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 102 -----VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp -----CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred -----cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence 122334444444444443322 223445555555555554321 0024455566666
Q ss_pred eccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153 152 NLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL 231 (257)
Q Consensus 152 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 231 (257)
++++|.+++. + +..+++|+.|++++|++++. .+..+++|+.|++++|++.+ +| ++.+++|+.+++++|++.
T Consensus 176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 6666666643 2 55666677777777776643 25666777777777777775 44 566777777777777765
Q ss_pred c
Q 048153 232 C 232 (257)
Q Consensus 232 ~ 232 (257)
+
T Consensus 247 ~ 247 (457)
T 3bz5_A 247 E 247 (457)
T ss_dssp C
T ss_pred C
Confidence 5
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=2.9e-21 Score=163.76 Aligned_cols=224 Identities=17% Similarity=0.192 Sum_probs=112.1
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCC-------------CeeeccCceecccCCCCCc
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQL-------------QLLDLSNNNLHGLIPPCFD 67 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~~~~~~ 67 (257)
++|++++|.+ +.+|+.++++++|++|++++|.+.+..|..++.+++| ++|++++|.+++++. ..
T Consensus 14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-~~- 90 (454)
T 1jl5_A 14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-LP- 90 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-CC-
T ss_pred hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-Cc-
Confidence 4688999999 5889999999999999999999998899888887764 888888888876433 21
Q ss_pred CCcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC
Q 048153 68 NTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR 147 (257)
Q Consensus 68 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 147 (257)
..+..+....+.+..++.. ...++.+++..+.+..... ..++|++|++++|.+++ +| .+..+++
T Consensus 91 -~~L~~L~l~~n~l~~lp~~-----------~~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 91 -PHLESLVASCNSLTELPEL-----------PQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp -TTCSEEECCSSCCSSCCCC-----------CTTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred -CCCCEEEccCCcCCccccc-----------cCCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 2344555555555544321 1233333333333322111 12445555555555543 33 3455555
Q ss_pred cCEEeccCCccccCCCc-------------------cccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC
Q 048153 148 IQTLNLSHNDLIGTIPS-------------------TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208 (257)
Q Consensus 148 L~~L~l~~n~l~~~~~~-------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 208 (257)
|++|++++|.+++ .|. .+..+++|+.|++++|++++ +|.. .++|+.|++++|.+.
T Consensus 155 L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 5555555555443 222 34445555555555555542 2221 135556666666555
Q ss_pred CCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCc
Q 048153 209 KIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNK 253 (257)
Q Consensus 209 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (257)
.+|. ++.+++|+++++++|.+.. +|.. ...++.|++++|..
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYL 269 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCC
T ss_pred cccc-cCCCCCCCEEECCCCcCCc-cccc--ccccCEEECCCCcc
Confidence 4443 5566777777777776553 3432 25566666665543
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.3e-20 Score=150.94 Aligned_cols=104 Identities=21% Similarity=0.317 Sum_probs=83.5
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.++.. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence 67788889998888754 4577888899999999988864 567788889999999998885443 77888999999
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 232 (257)
+++|.+.+ ++ .+..+++|+.|++++|++.+
T Consensus 185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 185 LSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 99998884 44 37788889999999888765
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.3e-20 Score=152.02 Aligned_cols=204 Identities=17% Similarity=0.263 Sum_probs=154.2
Q ss_pred ccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCc
Q 048153 6 SYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFE 85 (257)
Q Consensus 6 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~ 85 (257)
..+.+.+.. .++.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..
T Consensus 27 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~----------------- 83 (308)
T 1h6u_A 27 GKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKN----------------- 83 (308)
T ss_dssp TCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT-----------------
T ss_pred CCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--Hcc-----------------
Confidence 344444332 35678999999999999984 44 68899999999999999976543 222
Q ss_pred chhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCcc
Q 048153 86 TSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPST 165 (257)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 165 (257)
+..++.+++..+.+........+++|++|++++|.+++. + .+..+++|++|++++|.+++..+
T Consensus 84 -------------l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-- 146 (308)
T 1h6u_A 84 -------------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-- 146 (308)
T ss_dssp -------------CCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--
T ss_pred -------------CCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--
Confidence 122333344444333333334478899999999999864 3 38899999999999999996544
Q ss_pred ccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccc
Q 048153 166 FSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTM 245 (257)
Q Consensus 166 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~ 245 (257)
+..+++|+.|++++|++++ .+. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++....+ ....+.++.
T Consensus 147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~ 221 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFI 221 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCE
T ss_pred ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCE
Confidence 8889999999999999985 333 8889999999999999985443 7889999999999999876543 224578899
Q ss_pred cccccCCcc
Q 048153 246 LKASTTNKE 254 (257)
Q Consensus 246 l~~~~~~~~ 254 (257)
|++++|...
T Consensus 222 L~l~~N~i~ 230 (308)
T 1h6u_A 222 VTLTNQTIT 230 (308)
T ss_dssp EEEEEEEEE
T ss_pred EEccCCeee
Confidence 998887643
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=4.2e-20 Score=142.86 Aligned_cols=155 Identities=25% Similarity=0.280 Sum_probs=134.5
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+.++.+++++. .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.++.+.+..+..
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~------------ 86 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS------------ 86 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc------------
Confidence 35788888888 5665443 89999999999999888899999999999999999997665554433
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+++|++|++++|.+++..+..|..+++|+.|++++|.++
T Consensus 87 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 87 ----------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ----------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence 678999999999999887788899999999999999999
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCC
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 211 (257)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 677888999999999999999996666778999999999999999986544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=156.20 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=111.8
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC---C-CccccCccCCCEEEccCCcccccCCh----hhhc
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT---I-PSTFSNLKHIESLDLSYNQLNGKIPL----QLVE 192 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~ 192 (257)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|+++ ..+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 67899999999999988888999999999999999997642 2 233467889999999999997 3333 2577
Q ss_pred CCCCCEEEccCCcccCCCChhhhhc---cCCCeeccccCcccccCCCCCccCcccccccccCCccc
Q 048153 193 LNTLAVFSVAHNNLSGKIPEWTAQF---ATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEM 255 (257)
Q Consensus 193 ~~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (257)
+++|++|++++|++.+..|..+..+ ++|++|++++|.+. .+|..++ +.++.|++++|....
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCC
Confidence 8999999999999998878777766 69999999999988 6787766 899999999998654
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.6e-22 Score=164.19 Aligned_cols=250 Identities=16% Similarity=0.155 Sum_probs=164.6
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCC----hhhhCCC-CCCeeeccCceecccCCCCCcC------Cc
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP----VQLCRLN-QLQLLDLSNNNLHGLIPPCFDN------TT 70 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~------~~ 70 (257)
++.+++|.+++.+|+.+...++|++|++++|.+.+..+ ..|..++ +|++|++++|.++...+..+.. ..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 56788888888888777777778888888888886666 6677787 7888888888887655443333 34
Q ss_pred ccccccCCCCCCCCcchhhhhhhhhhhcc-cchhhcccccccccccccccc-------ccccceEEcccCccccc----c
Q 048153 71 LHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQGRV-------VSYLSGLDLSCNKLICH----I 138 (257)
Q Consensus 71 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~-------~~~L~~L~ls~n~~~~~----~ 138 (257)
+..+..+.+.+........... +... ..++.++++.+.+........ ..+|++|++++|.++.. +
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~---l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT---LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH---HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHH---HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 5566666666554433322221 2222 456666666666544332211 35788999999888732 2
Q ss_pred CCCcCCCC-CcCEEeccCCccccCCCcccc----Cc-cCCCEEEccCCccccc----CChhhhc-CCCCCEEEccCCccc
Q 048153 139 SPQIGNLT-RIQTLNLSHNDLIGTIPSTFS----NL-KHIESLDLSYNQLNGK----IPLQLVE-LNTLAVFSVAHNNLS 207 (257)
Q Consensus 139 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~L~~n~l~ 207 (257)
+..+..++ +|++|++++|.+++..+..+. .. ++|+.|++++|++++. ++..+.. .++|++|++++|.+.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33344454 899999999988876665444 33 5899999999988853 3444544 358999999999888
Q ss_pred CCCChhh----hhccCCCeeccccCcccc-------cCCCCC-ccCcccccccccCCcc
Q 048153 208 GKIPEWT----AQFATFSESSYEGNHFLC-------GLPLPI-CRSPVTMLKASTTNKE 254 (257)
Q Consensus 208 ~~~~~~~----~~~~~L~~l~l~~n~~~~-------~~~~~~-~~~~l~~l~~~~~~~~ 254 (257)
+..+..+ ..+++|+.|++++|.+.. .++..+ ....+++||+++|...
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 6555333 446788999998887322 111122 4467888888888643
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.7e-20 Score=154.78 Aligned_cols=156 Identities=28% Similarity=0.304 Sum_probs=136.5
Q ss_pred CEEEcccccccccCCcccc-CcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC
Q 048153 1 MILDLSYNRLNGSIPDLVD-GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS 79 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~ 79 (257)
+.|+|++|++++..+..|. .+++|++|++++|++.+..+..|..+++|++|++++|.++...+..+..
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 110 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD----------- 110 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC-----------
Confidence 4799999999988888888 9999999999999999888888999999999999999998876665543
Q ss_pred CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153 80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI 159 (257)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (257)
+++|++|++++|.+....+..|..+++|++|++++|.++
T Consensus 111 -----------------------------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 111 -----------------------------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 678999999999999888999999999999999999999
Q ss_pred cCCCccc---cCccCCCEEEccCCcccccCChhhhcCCC--CCEEEccCCcccC
Q 048153 160 GTIPSTF---SNLKHIESLDLSYNQLNGKIPLQLVELNT--LAVFSVAHNNLSG 208 (257)
Q Consensus 160 ~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~L~~n~l~~ 208 (257)
.+.+..+ ..+++|+.|++++|+++...+..+..++. ++.|++++|.+..
T Consensus 150 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 7666666 56899999999999999655567788877 4889999998874
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=1.3e-19 Score=158.34 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=79.3
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.+... +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|+
T Consensus 108 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence 66788888888887743 3577788888888888888754 567778888888888888875444 77788888888
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 233 (257)
|++|++.+. + .+..+++|+.|++++|++...
T Consensus 182 Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 182 LSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 888888743 3 467788888888888876653
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=5.5e-20 Score=138.91 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=125.6
Q ss_pred ccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhh
Q 048153 18 VDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYR 97 (257)
Q Consensus 18 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (257)
.+.+++|++|++++|.+. .+| .+..+++|++|++++|.++.. ..+.
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~------------------------------ 85 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPIS------------------------------ 85 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGT------------------------------
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhh------------------------------
Confidence 467788999999999888 445 588888999999998865421 1111
Q ss_pred cccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEc
Q 048153 98 EKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 177 (257)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 86 ----------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 86 ----------------------GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp ----------------------TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred ----------------------cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 1677999999999998777888999999999999999999878888999999999999
Q ss_pred cCCc-ccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153 178 SYNQ-LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL 231 (257)
Q Consensus 178 ~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 231 (257)
++|+ ++ .++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.+++++|++-
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 9998 66 455 68889999999999999985 44 6788999999999999864
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=2.3e-21 Score=161.33 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=165.6
Q ss_pred CEEEcccccccccC----CccccCcccCcEeeCcCC---cccccCChhh-------hCCCCCCeeeccCceeccc----C
Q 048153 1 MILDLSYNRLNGSI----PDLVDGLSQLSHLILAHN---NLEGKVPVQL-------CRLNQLQLLDLSNNNLHGL----I 62 (257)
Q Consensus 1 ~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n---~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~----~ 62 (257)
++|+|++|.+++.. +..+..+++|++|++++| ++.+..|..+ ..+++|++|++++|.+... .
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 57999999998653 345778999999999996 4444555554 6889999999999998752 2
Q ss_pred CCCCc-CCcccccccCCCCCCCCcchhhhhhhhhhhcc---------cchhhcccccccccccc------ccccccccce
Q 048153 63 PPCFD-NTTLHESYSNGSSLKPFETSFLVKNIYIYREK---------KILEIFEFTTKNIAYTY------QGRVVSYLSG 126 (257)
Q Consensus 63 ~~~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~~------~~~~~~~L~~ 126 (257)
+..+. ...+..+....+.+.......+... .... ..++.+.+..+.+.... ....+++|++
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHHHHHHHHH---HHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHhCCCCCEEECcCCCCCHHHHHHHHHH---HHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 32222 2345566666665543222222222 1222 56677777777654221 1123668999
Q ss_pred EEcccCcccc-----ccCCCcCCCCCcCEEeccCCccc----cCCCccccCccCCCEEEccCCccccc----CChhhhc-
Q 048153 127 LDLSCNKLIC-----HISPQIGNLTRIQTLNLSHNDLI----GTIPSTFSNLKHIESLDLSYNQLNGK----IPLQLVE- 192 (257)
Q Consensus 127 L~ls~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~- 192 (257)
|++++|.++. ..+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|++++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999998872 34447888999999999999985 45677788889999999999999865 3455533
Q ss_pred -CCCCCEEEccCCcccC----CCChhh-hhccCCCeeccccCcccccCC
Q 048153 193 -LNTLAVFSVAHNNLSG----KIPEWT-AQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 193 -~~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+++|++|++++|.+.+ .+|..+ ..+++|+.|++++|++.+..+
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8999999999999986 377776 568999999999999887653
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.8e-19 Score=155.99 Aligned_cols=180 Identities=23% Similarity=0.322 Sum_probs=103.2
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
+.|++++|++++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.++++ |. +.. .+..+....+.
T Consensus 62 ~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~-~L~~L~Ls~N~ 131 (571)
T 3cvr_A 62 SELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA-SLKHLDVDNNQ 131 (571)
T ss_dssp SEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT-TCCEEECCSSC
T ss_pred cEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc-CCCEEECCCCc
Confidence 468888888886 56544 378899999999888 555 3467889999999988874 33 433 55555555555
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+..++. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 132 l~~lp~---------------------------------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 132 LTMLPE---------------------------------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CSCCCC---------------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCCC---------------------------------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 544332 14455555555555553 232 34455555555555554
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCC-------CEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTL-------AVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 233 (257)
.|. +. ++|+.|++++|+++ .+|. +.. +| +.|++++|++. .+|..+..+++|+.|++++|++.+.
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 333 33 45555555555555 3333 322 44 55555555555 3454444555555555555555554
Q ss_pred CCC
Q 048153 234 LPL 236 (257)
Q Consensus 234 ~~~ 236 (257)
.|.
T Consensus 246 ~p~ 248 (571)
T 3cvr_A 246 IRE 248 (571)
T ss_dssp HHH
T ss_pred CHH
Confidence 443
No 96
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=6.2e-19 Score=154.28 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=39.7
Q ss_pred cCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCccccccc
Q 048153 170 KHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKA 248 (257)
Q Consensus 170 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~ 248 (257)
++|+.|++++|++++ +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+|..+ ..+.++.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 455566666665553 33 23455666666666555 3333 3455666666666554 445443 2255666666
Q ss_pred ccCCc
Q 048153 249 STTNK 253 (257)
Q Consensus 249 ~~~~~ 253 (257)
++|..
T Consensus 292 ~~N~l 296 (622)
T 3g06_A 292 EGNPL 296 (622)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 65543
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=7.1e-22 Score=164.42 Aligned_cols=239 Identities=13% Similarity=0.157 Sum_probs=172.8
Q ss_pred cCCccccCcccCcEeeCcCCcccccCCh----hhhCCCCCCeeeccCcee---cccCCCCC--------cCCcccccccC
Q 048153 13 SIPDLVDGLSQLSHLILAHNNLEGKVPV----QLCRLNQLQLLDLSNNNL---HGLIPPCF--------DNTTLHESYSN 77 (257)
Q Consensus 13 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l---~~~~~~~~--------~~~~l~~~~~~ 77 (257)
.++..+..+++|++|++++|.+....+. .+..+++|++|++++|.+ .+..|..+ ....+..+..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3566788899999999999999865443 366899999999999754 33333222 22345566666
Q ss_pred CCCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc------ccc---------cccceEEcccCccc-cccC--
Q 048153 78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG------RVV---------SYLSGLDLSCNKLI-CHIS-- 139 (257)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~---------~~L~~L~ls~n~~~-~~~~-- 139 (257)
.+.+.......... .+.....++.+++..+.+...... ..+ ++|++|++++|.++ ...+
T Consensus 103 ~n~l~~~~~~~l~~---~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 103 DNAFGPTAQEPLID---FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp SCCCCTTTHHHHHH---HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCcCCHHHHHHHHH---HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 66655433222222 234455667777777765422111 112 78999999999986 3333
Q ss_pred -CCcCCCCCcCEEeccCCcccc-----CCCccccCccCCCEEEccCCccc----ccCChhhhcCCCCCEEEccCCcccCC
Q 048153 140 -PQIGNLTRIQTLNLSHNDLIG-----TIPSTFSNLKHIESLDLSYNQLN----GKIPLQLVELNTLAVFSVAHNNLSGK 209 (257)
Q Consensus 140 -~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~ 209 (257)
..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ..+|..+..+++|+.|++++|.+.+.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 356678899999999999883 34447788899999999999995 46777888999999999999999865
Q ss_pred ----CChhhhh--ccCCCeeccccCcccc----cCCCCC-c-cCcccccccccCCcc
Q 048153 210 ----IPEWTAQ--FATFSESSYEGNHFLC----GLPLPI-C-RSPVTMLKASTTNKE 254 (257)
Q Consensus 210 ----~~~~~~~--~~~L~~l~l~~n~~~~----~~~~~~-~-~~~l~~l~~~~~~~~ 254 (257)
++..+.. +++|+.|++++|.+.. .+|..+ . .+.++.|++++|...
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4556644 8999999999999887 466655 3 389999999998753
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=3.6e-21 Score=157.08 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=96.3
Q ss_pred ccccceEEcccC-ccccc-cCCCcCCCC-CcCEEeccCC--ccc-cCCCccccCccCCCEEEccCCc-ccccCChhhhcC
Q 048153 121 VSYLSGLDLSCN-KLICH-ISPQIGNLT-RIQTLNLSHN--DLI-GTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVEL 193 (257)
Q Consensus 121 ~~~L~~L~ls~n-~~~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 193 (257)
+++|++|++++| .++.. .+..+..++ +|++|++++| .++ +..+..+..+++|+.|++++|. +++..+..+..+
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 678999999999 77743 456677888 9999999999 454 3456667788999999999998 776777788889
Q ss_pred CCCCEEEccCCc-ccCCCChhhhhccCCCeeccccCcccccCCCCC---ccCcccccccccCCcc
Q 048153 194 NTLAVFSVAHNN-LSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI---CRSPVTMLKASTTNKE 254 (257)
Q Consensus 194 ~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~l~~l~~~~~~~~ 254 (257)
++|++|++++|. +.......++.+++|+.|++++| ++... ....+..|+++.|...
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCc
Confidence 999999999995 32222235778899999999988 33322 1244777777776554
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=6.8e-20 Score=144.55 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=120.5
Q ss_pred EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK 82 (257)
Q Consensus 3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~ 82 (257)
++++++.+++.. .++.+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~-------------- 83 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKD-------------- 83 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT--------------
T ss_pred HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hcc--------------
Confidence 456777777443 47888999999999998873 44 67888899999999998875433 221
Q ss_pred CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC
Q 048153 83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI 162 (257)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 162 (257)
+++|++|++++|.+++. +. +.. ++|++|++++|.+++.
T Consensus 84 --------------------------------------l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~- 121 (263)
T 1xeu_A 84 --------------------------------------LTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT- 121 (263)
T ss_dssp --------------------------------------CSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-
T ss_pred --------------------------------------CCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-
Confidence 56688888888887743 32 233 7788888888888753
Q ss_pred CccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153 163 PSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 163 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 233 (257)
+.+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+. ..+..+++|+.+++++|++.+.
T Consensus 122 -~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 -DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3577778888888888888743 3 577788888888888888755 5567778888888888887664
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.6e-18 Score=146.96 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=55.1
Q ss_pred cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC--CCcccc-------------Cc-cCCCEEEccCCccccc
Q 048153 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT--IPSTFS-------------NL-KHIESLDLSYNQLNGK 185 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~-------------~~-~~L~~L~l~~n~l~~~ 185 (257)
++|++|++++|.+++ +|.. .++|+.|++++|.+++. .|..+. .. ++|+.|++++|++++
T Consensus 257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~- 331 (454)
T 1jl5_A 257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE- 331 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-
T ss_pred cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-
Confidence 455555555555543 2222 24555566665555541 111110 11 355556666665553
Q ss_pred CChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccc--cCCCCCcc--------------Ccccccccc
Q 048153 186 IPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC--GLPLPICR--------------SPVTMLKAS 249 (257)
Q Consensus 186 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~--------------~~l~~l~~~ 249 (257)
+|.. +++|+.|++++|++. .+|. .+++|+++++++|++.+ .+|..+.. ..++.|+++
T Consensus 332 lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 332 LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 3322 356666666666666 3444 35677777777777666 55554411 456777777
Q ss_pred cCCc
Q 048153 250 TTNK 253 (257)
Q Consensus 250 ~~~~ 253 (257)
+|..
T Consensus 405 ~N~l 408 (454)
T 1jl5_A 405 TNPL 408 (454)
T ss_dssp ----
T ss_pred CCcC
Confidence 6654
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=6.3e-19 Score=154.23 Aligned_cols=103 Identities=24% Similarity=0.260 Sum_probs=80.6
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ .| ..+++|+.|++++|+++ .+|. .+++|+.|+
T Consensus 200 ~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 200 PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 345556666666555 2222 23679999999999986 44 45689999999999999 5555 578999999
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
+++|.+. .+|..+..+++|+.|++++|++.+..|.
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9999999 7788899999999999999998875554
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.6e-19 Score=144.55 Aligned_cols=182 Identities=21% Similarity=0.301 Sum_probs=146.3
Q ss_pred cccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCC
Q 048153 5 LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPF 84 (257)
Q Consensus 5 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~ 84 (257)
+..+.+.+.. .++.+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..
T Consensus 31 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~---------------- 88 (291)
T 1h6t_A 31 LKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LAN---------------- 88 (291)
T ss_dssp TTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTT----------------
T ss_pred hcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--ccc----------------
Confidence 3444444332 356789999999999999843 3 48889999999999999876433 211
Q ss_pred cchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCc
Q 048153 85 ETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS 164 (257)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 164 (257)
+++|++|++++|.++.. + .+..+++|++|++++|.+++. +
T Consensus 89 ------------------------------------l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~ 128 (291)
T 1h6t_A 89 ------------------------------------LKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--N 128 (291)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--G
T ss_pred ------------------------------------CCCCCEEECCCCcCCCC-h-hhccCCCCCEEECCCCcCCCC--h
Confidence 67899999999999853 3 489999999999999999964 5
Q ss_pred cccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCccc
Q 048153 165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVT 244 (257)
Q Consensus 165 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~ 244 (257)
.+..+++|+.|++++|++++. ..+..+++|+.|++++|++.+..+ ++.+++|+.|++++|.+.. +|.......++
T Consensus 129 ~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~ 203 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLD 203 (291)
T ss_dssp GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCS
T ss_pred hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCC
Confidence 688899999999999999854 578899999999999999996554 8899999999999998765 45433557899
Q ss_pred ccccccCCc
Q 048153 245 MLKASTTNK 253 (257)
Q Consensus 245 ~l~~~~~~~ 253 (257)
.|++++|..
T Consensus 204 ~L~l~~n~i 212 (291)
T 1h6t_A 204 VLELFSQEC 212 (291)
T ss_dssp EEEEEEEEE
T ss_pred EEECcCCcc
Confidence 999988753
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=3.8e-21 Score=156.98 Aligned_cols=230 Identities=17% Similarity=0.136 Sum_probs=163.2
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCccccc-CChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGK-VPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSNG 78 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~~ 78 (257)
++|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+.. ..+..+....
T Consensus 73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 4689999999976665 56799999999999998765 7778889999999999999887554443332 2344444444
Q ss_pred C-CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccc---ccccccc-ccceEEcccCc--cc-cccCCCcCCCCCcC
Q 048153 79 S-SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYT---YQGRVVS-YLSGLDLSCNK--LI-CHISPQIGNLTRIQ 149 (257)
Q Consensus 79 ~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~---~~~~~~~-~L~~L~ls~n~--~~-~~~~~~~~~l~~L~ 149 (257)
+ .+. ... ..........++.+++..+ .+... .....++ +|++|++++|. ++ ..++..+..+++|+
T Consensus 152 ~~~l~---~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 152 CSGFS---EFA---LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp CBSCC---HHH---HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred CCCCC---HHH---HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 3 222 111 1122334456666776666 54431 1223366 99999999994 44 34566677899999
Q ss_pred EEeccCCc-cccCCCccccCccCCCEEEccCCc-ccccCChhhhcCCCCCEEEccCCcccCCCChhhhhc-cCCCeeccc
Q 048153 150 TLNLSHND-LIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQF-ATFSESSYE 226 (257)
Q Consensus 150 ~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~l~l~ 226 (257)
+|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +.. ..+..+ ..+..|+++
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQIN 301 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEES
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEe
Confidence 99999999 777778888999999999999995 44333336788999999999999 442 233344 347778899
Q ss_pred cCcccccCCCCCccC
Q 048153 227 GNHFLCGLPLPICRS 241 (257)
Q Consensus 227 ~n~~~~~~~~~~~~~ 241 (257)
+|.+.+..|......
T Consensus 302 ~n~l~~~~~~~~~~~ 316 (336)
T 2ast_B 302 CSHFTTIARPTIGNK 316 (336)
T ss_dssp CCCSCCTTCSSCSST
T ss_pred cccCccccCCccccc
Confidence 999998888766543
No 104
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=2e-19 Score=135.26 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=89.3
Q ss_pred ccceEEcccCccccccCC-CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEc
Q 048153 123 YLSGLDLSCNKLICHISP-QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV 201 (257)
Q Consensus 123 ~L~~L~ls~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 201 (257)
++++|++++|.+++..+. .+..+++|++|++++|.+++..|.+|..+++|+.|++++|++++..+..+.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 577788888887766553 4777888888888888888777778888888888888888888766667777888888888
Q ss_pred cCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 202 AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 202 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
++|++.+..|..+..+++|+.+++++|+|.|+|+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 88888877777777788888888888888887764
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=3e-19 Score=134.89 Aligned_cols=148 Identities=15% Similarity=0.259 Sum_probs=124.1
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|.+. .+| .++.+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..
T Consensus 47 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------ 110 (197)
T 4ezg_A 47 TYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------------ 110 (197)
T ss_dssp CEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------------
T ss_pred cEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------------
Confidence 57999999999 455 5999999999999999776 4457899999999999999998655554433
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCc-cc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND-LI 159 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~ 159 (257)
+++|++|++++|.++...+..+..+++|++|++++|. ++
T Consensus 111 ----------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 111 ----------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150 (197)
T ss_dssp ----------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred ----------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence 6789999999999997777889999999999999998 77
Q ss_pred cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC
Q 048153 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208 (257)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 208 (257)
. .+ .+..+++|+.|++++|++++ .+ .+..+++|+.|++++|++.+
T Consensus 151 ~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 151 D-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred c-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 4 44 68899999999999999985 44 68889999999999999863
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.6e-19 Score=145.54 Aligned_cols=236 Identities=13% Similarity=0.094 Sum_probs=155.3
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceeccc-CCCCCcCCc-ccc-cccCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL-IPPCFDNTT-LHE-SYSNG 78 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~-l~~-~~~~~ 78 (257)
+++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|++++|.+.+. .+..|.... +.. .....
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4667777787 556544 35788888888888866666788888888888888887543 344554433 222 22223
Q ss_pred CCCCCCcchhhhhhhhhhhcccchhhcccccccccccccccc--ccccceEEccc-CccccccCCCcCCCC-CcCEEecc
Q 048153 79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV--VSYLSGLDLSC-NKLICHISPQIGNLT-RIQTLNLS 154 (257)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~L~~L~ls~-n~~~~~~~~~~~~l~-~L~~L~l~ 154 (257)
+.+..++.. .+..+..|+.+.+..+.+........ ...+..+++.+ +.+....+..|..+. .++.|+++
T Consensus 90 N~l~~l~~~-------~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 90 NNLLYINPE-------AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp TTCCEECTT-------SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred CcccccCch-------hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 444333221 22344556666666666554433322 34566777765 556656666777765 58889999
Q ss_pred CCccccCCCccccCccCCCEEEccC-CcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153 155 HNDLIGTIPSTFSNLKHIESLDLSY-NQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 155 ~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 233 (257)
+|.++.+.+.+|. ..+|+.+++.+ |.++...+..+.++++|+.|++++|+++...+.. +.+|+.|.+.++.-+..
T Consensus 163 ~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 163 KNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK 238 (350)
T ss_dssp SSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC
T ss_pred cccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc
Confidence 9999966666654 46788999874 6777444557788999999999999998444433 56677777777766777
Q ss_pred CCCCCccCcccccccccC
Q 048153 234 LPLPICRSPVTMLKASTT 251 (257)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~ 251 (257)
+|...-.+.|+.++++++
T Consensus 239 lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 239 LPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCTTTCCSCCEEECSCH
T ss_pred CCCchhCcChhhCcCCCC
Confidence 775445577787777654
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=133.02 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=104.7
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
.+++++|++++|.++ .+|..|..+++|+.|++++|.++++.+.+|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 456899999999998 6678899999999999999999988888999999999999999999987788899999999999
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
+++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 999999976667788999999999999999998864
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=7.1e-19 Score=132.24 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=84.3
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 55677777777777767677777778888888888888777777777778888888888888777777777778888888
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCccccc
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTML 246 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l 246 (257)
+++|.+.+..+... ....++...+.++...|..|...-..++..+
T Consensus 133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l 177 (192)
T 1w8a_A 133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKVRDVQIKDL 177 (192)
T ss_dssp CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTTTTSBGGGS
T ss_pred eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChHHcCCChhhC
Confidence 88888776544211 1111223344555566666665544444443
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1e-20 Score=156.15 Aligned_cols=231 Identities=18% Similarity=0.145 Sum_probs=165.8
Q ss_pred CEEEcccccccccCC----ccccCcc-cCcEeeCcCCcccccCChhhhCC-----CCCCeeeccCceecccCCCCCcC--
Q 048153 1 MILDLSYNRLNGSIP----DLVDGLS-QLSHLILAHNNLEGKVPVQLCRL-----NQLQLLDLSNNNLHGLIPPCFDN-- 68 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~-- 68 (257)
++|||++|.+++..+ +.|+.++ +|++|++++|.+.+..+..+..+ ++|++|++++|.++...+..+..
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 579999999997666 7788898 99999999999998778777775 89999999999998655442211
Q ss_pred ----CcccccccCCCCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc-------ccccccceEEcccCccccc
Q 048153 69 ----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG-------RVVSYLSGLDLSCNKLICH 137 (257)
Q Consensus 69 ----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~L~~L~ls~n~~~~~ 137 (257)
..+..+....+.+.......+....... ...++.++++.+.+...... ...+.|++|++++|.++..
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL--PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS--CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhC--CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 3566677777776555443332222110 13566677777766532211 1124899999999999865
Q ss_pred cCCC----cCCC-CCcCEEeccCCccccCC----CccccC-ccCCCEEEccCCcccccCCh----hhhcCCCCCEEEccC
Q 048153 138 ISPQ----IGNL-TRIQTLNLSHNDLIGTI----PSTFSN-LKHIESLDLSYNQLNGKIPL----QLVELNTLAVFSVAH 203 (257)
Q Consensus 138 ~~~~----~~~l-~~L~~L~l~~n~l~~~~----~~~~~~-~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~ 203 (257)
.+.. +..+ ++|++|++++|.+++.. +..+.. .++|+.|++++|.+++..+. .+..+++|+.|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 5433 3445 59999999999998643 334444 45999999999999865443 345679999999999
Q ss_pred CcccCCCCh-------hhhhccCCCeeccccCccccc
Q 048153 204 NNLSGKIPE-------WTAQFATFSESSYEGNHFLCG 233 (257)
Q Consensus 204 n~l~~~~~~-------~~~~~~~L~~l~l~~n~~~~~ 233 (257)
|.+.+..+. .+..+++|+.+++++|++...
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 996644333 344667899999999998765
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=3.1e-21 Score=167.47 Aligned_cols=205 Identities=18% Similarity=0.148 Sum_probs=144.4
Q ss_pred cCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhc
Q 048153 19 DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYRE 98 (257)
Q Consensus 19 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (257)
..+++|+.|++++|+++ .+|..++.+++|+.|++++|......+..... .+... ..+.....+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~---------~~~~~-----~~~~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRA---------LDPLL-----YEKETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------HCTGG-----GHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHh---------ccccc-----CCHHHHHHHHh
Confidence 56889999999999998 78999999999999999776421100100000 00000 00001111111
Q ss_pred cc-----------chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCcccc
Q 048153 99 KK-----------ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS 167 (257)
Q Consensus 99 ~~-----------~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 167 (257)
+. .+..+.+..+.+... ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ ..|..++
T Consensus 411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l----~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 411 LKAVDPMRAAYLDDLRSKFLLENSVLKM----EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred cccCcchhhcccchhhhhhhhccccccc----CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 11 111122222222111 12358999999999986 565 999999999999999999 6788999
Q ss_pred CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCeeccccCcccccCCCCC----ccCc
Q 048153 168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLCGLPLPI----CRSP 242 (257)
Q Consensus 168 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~ 242 (257)
.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+.. |..++.+++|+.|++++|++.+..|... ..+.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 99999999999999995 66 7899999999999999999776 9999999999999999999887655443 1355
Q ss_pred ccccc
Q 048153 243 VTMLK 247 (257)
Q Consensus 243 l~~l~ 247 (257)
++.|+
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 66554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.6e-19 Score=154.27 Aligned_cols=183 Identities=22% Similarity=0.326 Sum_probs=148.3
Q ss_pred EcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCC
Q 048153 4 DLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKP 83 (257)
Q Consensus 4 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~ 83 (257)
.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~--------------- 85 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTN--------------- 85 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGG---------------
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hcc---------------
Confidence 345555554433 5788999999999999883 33 58889999999999999875433 111
Q ss_pred CcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCC
Q 048153 84 FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP 163 (257)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 163 (257)
+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++.
T Consensus 86 -------------------------------------l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-- 124 (605)
T 1m9s_A 86 -------------------------------------LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-- 124 (605)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--
T ss_pred -------------------------------------CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--
Confidence 6789999999999985 33 689999999999999999953
Q ss_pred ccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcc
Q 048153 164 STFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPV 243 (257)
Q Consensus 164 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l 243 (257)
+.+..+++|+.|++++|++++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|++++|.+.. +|.....+.|
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L 199 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNL 199 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTC
T ss_pred ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCC
Confidence 4688899999999999999854 678899999999999999997666 8899999999999998765 4433355889
Q ss_pred cccccccCCc
Q 048153 244 TMLKASTTNK 253 (257)
Q Consensus 244 ~~l~~~~~~~ 253 (257)
+.|+++.|..
T Consensus 200 ~~L~L~~N~l 209 (605)
T 1m9s_A 200 DVLELFSQEC 209 (605)
T ss_dssp SEEECCSEEE
T ss_pred CEEEccCCcC
Confidence 9999988754
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=2.6e-21 Score=164.52 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=42.4
Q ss_pred CEEEcccccccc----cCCccccCcccCcEeeCcCCcccccCChhhhC-----CCCCCeeeccCceecc
Q 048153 1 MILDLSYNRLNG----SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-----LNQLQLLDLSNNNLHG 60 (257)
Q Consensus 1 ~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~ 60 (257)
++|++++|++++ .++..++.+++|++|++++|.+.+..+..+.. .++|++|++++|.++.
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 468899998884 45778888888999999988887544433322 3457777777776654
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.4e-18 Score=142.65 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=147.7
Q ss_pred cEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCCCCC-Ccchhhhhhhhhhhcccch
Q 048153 25 SHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSSLKP-FETSFLVKNIYIYREKKIL 102 (257)
Q Consensus 25 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l 102 (257)
+.++.++++++ .+|..+. +++++|++++|+++.+.++.|... .+..+..+.+.+.. ++...+ ..+..+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-------~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-------SNLPKL 81 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-------CSCTTC
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-------hcchhh
Confidence 67889999998 6776653 589999999999998888877665 46677777766532 322211 112221
Q ss_pred h-hcccccccccccccc--ccccccceEEcccCccccccCCCcCCCCCcCEEeccC-CccccCCCccccCcc-CCCEEEc
Q 048153 103 E-IFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSH-NDLIGTIPSTFSNLK-HIESLDL 177 (257)
Q Consensus 103 ~-~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l 177 (257)
. ......+.+...... ..+++|++|++++|.+....+..+.....+..+++.+ +.+..+.+.+|..+. .++.|++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 1 222333333333221 3378899999999999877777777777888888866 568767777777665 6889999
Q ss_pred cCCcccccCChhhhcCCCCCEEEccC-CcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCC
Q 048153 178 SYNQLNGKIPLQLVELNTLAVFSVAH-NNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTN 252 (257)
Q Consensus 178 ~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~ 252 (257)
++|+++...+..+ ...+|+.+++.+ |.+....+..++.+++|++|++++|.+.. +|... ...++.|....+.
T Consensus 162 ~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~~-~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 162 NKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYG-LENLKKLRARSTY 234 (350)
T ss_dssp CSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSSS-CTTCCEEECTTCT
T ss_pred ccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChhh-hccchHhhhccCC
Confidence 9999995444444 457899999986 55664444577899999999999998654 66543 4456666655543
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=2.2e-21 Score=164.86 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccCChhhhc-----CCCCCEEEccCCcccCC----CC
Q 048153 145 LTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKIPLQLVE-----LNTLAVFSVAHNNLSGK----IP 211 (257)
Q Consensus 145 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~~----~~ 211 (257)
+++|++|++++|.++.. .+..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|.+.+. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 44455555555544432 2333334455555555555554332222222 14555555555555533 23
Q ss_pred hhhhhccCCCeeccccCcccccCCCCCc------cCcccccccccCCc
Q 048153 212 EWTAQFATFSESSYEGNHFLCGLPLPIC------RSPVTMLKASTTNK 253 (257)
Q Consensus 212 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~------~~~l~~l~~~~~~~ 253 (257)
..+..+++|++|++++|.+....+..++ .+.++.|++++|..
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 4444556666666666665543332222 35677777776654
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=4.1e-18 Score=126.37 Aligned_cols=115 Identities=22% Similarity=0.249 Sum_probs=103.2
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
.+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 45689999999999977777889999999999999999988778889999999999999999976666788899999999
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+++|.+.+..+..+..+++|+.+++++|++.|.||
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999996666667889999999999999999887
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.3e-17 Score=131.54 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=121.9
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|++++|+++. ++ .++.+++|++|++++|++++..+ +..+++|++|++++|++++..+..
T Consensus 44 ~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~--------------- 104 (263)
T 1xeu_A 44 QNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP--------------- 104 (263)
T ss_dssp SEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC---------------
T ss_pred cEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc---------------
Confidence 579999999994 45 68999999999999999995444 899999999999999997542211
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
.++|++|++++|.+++. +.+..+++|+.|++++|.+++
T Consensus 105 ----------------------------------------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 105 ----------------------------------------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp ----------------------------------------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred ----------------------------------------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 14588999999999854 358899999999999999996
Q ss_pred CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC
Q 048153 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI 210 (257)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 210 (257)
. +.+..+++|+.|++++|++++. ..+..+++|+.|++++|.+.+..
T Consensus 143 ~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 143 I--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred C--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 5 3688899999999999999865 66888999999999999998553
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=7e-18 Score=124.02 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=76.1
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVF 199 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L 199 (257)
+++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++.. +..+..+++|++|
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 45566777777766644 56677777777777777777656666666777777888777777432 2566777788888
Q ss_pred EccCCcccCCCC---hhhhhccCCCeeccccCccc
Q 048153 200 SVAHNNLSGKIP---EWTAQFATFSESSYEGNHFL 231 (257)
Q Consensus 200 ~L~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~ 231 (257)
++++|.+.+..+ ..+..+++|+.+++++|+..
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888887775544 46677778888888877643
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.7e-17 Score=142.36 Aligned_cols=166 Identities=23% Similarity=0.299 Sum_probs=130.2
Q ss_pred CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153 1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80 (257)
Q Consensus 1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 80 (257)
++|+|++|+++ .+| ..+++|++|++++|.+++ +|. ++. +|++|++++|.++++++ ....+..+....+.
T Consensus 83 ~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 83 TVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp SEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc
Confidence 57999999999 566 557999999999999996 666 665 99999999999988544 23334445444444
Q ss_pred CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 160 (257)
+..++. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 152 l~~lp~---------------------------------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 152 LTMLPE---------------------------------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSCCCC---------------------------------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred cCcCCC---------------------------------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 443221 26789999999999986 565 65 89999999999999
Q ss_pred CCCccccCccCC-------CEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccC
Q 048153 161 TIPSTFSNLKHI-------ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFAT 219 (257)
Q Consensus 161 ~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 219 (257)
..|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+.+.+|..+..+..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 4555 544 67 99999999999 67888888999999999999999988888877543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=3.9e-17 Score=120.02 Aligned_cols=138 Identities=21% Similarity=0.255 Sum_probs=105.0
Q ss_pred CcccCcEeeCcCCccc-ccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhc
Q 048153 20 GLSQLSHLILAHNNLE-GKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYRE 98 (257)
Q Consensus 20 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (257)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------ 69 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------ 69 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC------------------------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc------------------------------
Confidence 3477888888888887 56677778888888888888888654 22211
Q ss_pred ccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCC-ccccCccCCCEEEc
Q 048153 99 KKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP-STFSNLKHIESLDL 177 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l 177 (257)
+++|++|++++|.+.+.+|..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus 70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 5678888888888886677777778888888888888886432 67788888888888
Q ss_pred cCCcccccCC---hhhhcCCCCCEEEccCCcccCCCCh
Q 048153 178 SYNQLNGKIP---LQLVELNTLAVFSVAHNNLSGKIPE 212 (257)
Q Consensus 178 ~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~ 212 (257)
++|.+++..+ ..+..+++|+.|++++|.+. ++|.
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 8888885444 36778888888888888887 4443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=4.8e-17 Score=117.13 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=52.9
Q ss_pred ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc-CChhhhcCCCCCEEEc
Q 048153 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK-IPLQLVELNTLAVFSV 201 (257)
Q Consensus 123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L 201 (257)
+|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++. .+..+..+++|++|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 344444444444432 3444555555555555555544444444455566666666655532 1244555566666666
Q ss_pred cCCcccCCCC---hhhhhccCCCeeccc
Q 048153 202 AHNNLSGKIP---EWTAQFATFSESSYE 226 (257)
Q Consensus 202 ~~n~l~~~~~---~~~~~~~~L~~l~l~ 226 (257)
++|.+.+..+ ..+..+++|+.++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666554443 345555666665554
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=119.87 Aligned_cols=89 Identities=28% Similarity=0.306 Sum_probs=72.5
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.+++..+..|..+++|++|++++|.++++.+.+|..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 56677888888888777777788888888888888888888788888888888888888888865555678888899999
Q ss_pred ccCCcccCC
Q 048153 201 VAHNNLSGK 209 (257)
Q Consensus 201 L~~n~l~~~ 209 (257)
+++|.+...
T Consensus 133 L~~N~~~C~ 141 (193)
T 2wfh_A 133 IGANPLYCD 141 (193)
T ss_dssp CCSSCEECS
T ss_pred eCCCCeecC
Confidence 998888743
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.71 E-value=7.1e-17 Score=118.88 Aligned_cols=109 Identities=23% Similarity=0.241 Sum_probs=94.2
Q ss_pred cceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccC
Q 048153 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203 (257)
Q Consensus 124 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 203 (257)
.+.+++++|.++. +|..+. +.|+.|++++|.++++.+..|..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5788999999884 555443 7899999999999988888899999999999999999976666778899999999999
Q ss_pred CcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 204 NNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 204 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
|++.+..+..+..+++|+.|++++|+|.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99997767778889999999999999999886
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=5.8e-18 Score=151.17 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=88.8
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
+++|++|++++|.++ .+|..+..+++|+.|++++|.|+ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 566888888888888 67777888888888888888888 56778888888888888888887 6677788888888888
Q ss_pred ccCCcccCCCChhhhhcc-CCCeeccccCcccccCCCCC
Q 048153 201 VAHNNLSGKIPEWTAQFA-TFSESSYEGNHFLCGLPLPI 238 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~ 238 (257)
|++|.+.+.+|..+..+. ....+++++|.+.+.+|..+
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 888888877777665442 22346677777777666543
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=2.3e-16 Score=116.93 Aligned_cols=134 Identities=24% Similarity=0.291 Sum_probs=102.0
Q ss_pred cCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccch
Q 048153 23 QLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKIL 102 (257)
Q Consensus 23 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 102 (257)
..+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~---------------------------------- 50 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDK---------------------------------- 50 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTT----------------------------------
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcC----------------------------------
Confidence 3567777777776 344433 257888888888877655444332
Q ss_pred hhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcc
Q 048153 103 EIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 182 (257)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 51 ------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 51 ------------------LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp ------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 56688888888888866666778888999999999999877777788888999999999999
Q ss_pred cccCChhhhcCCCCCEEEccCCcccCCCC
Q 048153 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIP 211 (257)
Q Consensus 183 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 211 (257)
++..+..+..+++|++|++++|.+.+..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 86555566788999999999999886554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=8.6e-17 Score=115.80 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=109.7
Q ss_pred ccccceEEcccCccc-cccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEE
Q 048153 121 VSYLSGLDLSCNKLI-CHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVF 199 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 199 (257)
.+++++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 578999999999998 67788889999999999999999966 778899999999999999997678888889999999
Q ss_pred EccCCcccCC-CChhhhhccCCCeeccccCcccccCC---CCC-ccCccccccccc
Q 048153 200 SVAHNNLSGK-IPEWTAQFATFSESSYEGNHFLCGLP---LPI-CRSPVTMLKAST 250 (257)
Q Consensus 200 ~L~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~-~~~~l~~l~~~~ 250 (257)
++++|++.+. .+..+..+++|+++++++|++....+ ..+ ..+.++.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999853 34788899999999999999776433 122 457888888864
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.2e-16 Score=128.52 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=151.5
Q ss_pred CEEEccccccc--------------------ccCCccccC--------cccCcEeeCcCCcccccCChhhhCCCCCCeee
Q 048153 1 MILDLSYNRLN--------------------GSIPDLVDG--------LSQLSHLILAHNNLEGKVPVQLCRLNQLQLLD 52 (257)
Q Consensus 1 ~~L~L~~n~i~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 52 (257)
++|||++|++. .+.+.+|.+ +++|+.+++.+ .++.+...+|.++++|+.++
T Consensus 52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~ 130 (329)
T 3sb4_A 52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ 130 (329)
T ss_dssp CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence 47899999988 344567888 99999999999 88877888899999999999
Q ss_pred ccCceecccCCCCCcCCc-ccccccCCC----CCCCCcchhhh--hhhh-----------------hhhcccchhhcccc
Q 048153 53 LSNNNLHGLIPPCFDNTT-LHESYSNGS----SLKPFETSFLV--KNIY-----------------IYREKKILEIFEFT 108 (257)
Q Consensus 53 l~~n~l~~~~~~~~~~~~-l~~~~~~~~----~l~~~~~~~~~--~~~~-----------------~~~~~~~l~~~~~~ 108 (257)
+.+|.+..+.+..|..+. +..+..... ....+....+. .... .......+..+...
T Consensus 131 l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 210 (329)
T 3sb4_A 131 IRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIE 210 (329)
T ss_dssp BCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEE
T ss_pred cCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEe
Confidence 999998878777776643 111111110 00000000000 0000 00000001111111
Q ss_pred ccccc--cccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCC-EEEccCCccccc
Q 048153 109 TKNIA--YTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE-SLDLSYNQLNGK 185 (257)
Q Consensus 109 ~~~~~--~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~ 185 (257)
..-.. .......+++|+++++++|.++.+.+..|.++++|+.+++.+| ++.+...+|.++.+|+ .+++.+ .++..
T Consensus 211 ~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I 288 (329)
T 3sb4_A 211 GKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI 288 (329)
T ss_dssp ECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE
T ss_pred eeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE
Confidence 00000 0000012578999999998888788888999999999999988 7778888999999999 999988 67766
Q ss_pred CChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeecc
Q 048153 186 IPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSY 225 (257)
Q Consensus 186 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l 225 (257)
.+.+|.++++|+.+++++|.+....+..+.++++|+.+..
T Consensus 289 ~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7788999999999999999998777788889999988753
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.68 E-value=1.8e-16 Score=117.40 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=60.8
Q ss_pred ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCCh--hhhcCCCCCEEE
Q 048153 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL--QLVELNTLAVFS 200 (257)
Q Consensus 123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~ 200 (257)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 455555555555533 34555666666666666666544444456666666666666665 3333 555666666666
Q ss_pred ccCCcccCCCCh----hhhhccCCCeeccccCcc
Q 048153 201 VAHNNLSGKIPE----WTAQFATFSESSYEGNHF 230 (257)
Q Consensus 201 L~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~ 230 (257)
+++|.+. ..|. .+..+++|+.+++++|+.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666665 3333 255666666666666653
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=2.5e-16 Score=116.31 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=87.6
Q ss_pred cceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccC
Q 048153 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203 (257)
Q Consensus 124 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 203 (257)
-+.+++++|.++ .+|..+. ++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+.++++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 356788888886 4555443 7788889999988887788888888899999999988865555677888899999999
Q ss_pred CcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 204 NNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 204 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
|++.+..+..+..+++|+.|++++|+|.|.|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 98886666668888889999999998888775
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3.3e-16 Score=139.86 Aligned_cols=143 Identities=24% Similarity=0.284 Sum_probs=94.7
Q ss_pred CccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhh
Q 048153 15 PDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIY 94 (257)
Q Consensus 15 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 94 (257)
+..|..+++|+.|+|++|.+. .+|..+..+++|++|++++|.++ ..|..+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------- 268 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-------------------------- 268 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG--------------------------
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC--------------------------
Confidence 455566666666666666665 44444556666666666666665 22322211
Q ss_pred hhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCE
Q 048153 95 IYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174 (257)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 174 (257)
+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..|..+++|+.
T Consensus 269 --------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 269 --------------------------LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320 (727)
T ss_dssp --------------------------GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCC
T ss_pred --------------------------CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccE
Confidence 677899999999988 66888899999999999999988 56777888999999
Q ss_pred EEccCCcccccCChhhhcCC-CCCEEEccCCcccCCCChh
Q 048153 175 LDLSYNQLNGKIPLQLVELN-TLAVFSVAHNNLSGKIPEW 213 (257)
Q Consensus 175 L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~ 213 (257)
|++++|.+++..|..+.... .+..+++++|.+.+.+|..
T Consensus 321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 99999999877776664321 1123556666666555543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=7e-16 Score=114.18 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=110.3
Q ss_pred cccCcccCcEeeCcCCcccccCChhhhCCC-CCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhh
Q 048153 17 LVDGLSQLSHLILAHNNLEGKVPVQLCRLN-QLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYI 95 (257)
Q Consensus 17 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 95 (257)
.+..+.+|+.|++++|.++. ++. +..+. +|++|++++|.+++. ..+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~--------------------------- 62 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPL--------------------------- 62 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCC---------------------------
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--ccccc---------------------------
Confidence 47788999999999999984 454 55555 999999999999864 22221
Q ss_pred hhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCc--cccCccCCC
Q 048153 96 YREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS--TFSNLKHIE 173 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~ 173 (257)
+++|++|++++|.+++..+..+..+++|++|++++|.++. .+. .+..+++|+
T Consensus 63 -------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 63 -------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLT 116 (176)
T ss_dssp -------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCC
T ss_pred -------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCC
Confidence 6789999999999997655556899999999999999984 444 788899999
Q ss_pred EEEccCCcccccCChh----hhcCCCCCEEEccCCccc
Q 048153 174 SLDLSYNQLNGKIPLQ----LVELNTLAVFSVAHNNLS 207 (257)
Q Consensus 174 ~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~ 207 (257)
.|++++|.++ ..|.. +..+++|+.||+++|...
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999998 55654 889999999999999876
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=6.6e-17 Score=140.39 Aligned_cols=197 Identities=18% Similarity=0.199 Sum_probs=146.6
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCc-------------ccccCChhhhCCCCCCeee-ccCceecccCCCCCc
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNN-------------LEGKVPVQLCRLNQLQLLD-LSNNNLHGLIPPCFD 67 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~ 67 (257)
.|+|++|+++ .+|+.++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.......+.
T Consensus 353 ~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~ 431 (567)
T 1dce_A 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431 (567)
T ss_dssp SCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred eccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhh
Confidence 5889999998 789999999999999998775 4556777888888899888 666654321100000
Q ss_pred CCcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC
Q 048153 68 NTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR 147 (257)
Q Consensus 68 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 147 (257)
. + .+... ....++.++++.+.+........+++|++|++++|.++ .+|..+..+++
T Consensus 432 ~----------n------------~i~~l-~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 432 E----------N------------SVLKM-EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp H----------H------------HHHHH-HHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred c----------c------------ccccc-CccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCC
Confidence 0 0 00000 00113344444444433333334788999999999999 77889999999
Q ss_pred cCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEEEccCCcccCCCCh---hhhhccCCCee
Q 048153 148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVFSVAHNNLSGKIPE---WTAQFATFSES 223 (257)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~l 223 (257)
|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+.+.+|. ....+++|+.|
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 9999999999996 45 8899999999999999999765 89999999999999999999976553 34458999988
Q ss_pred cc
Q 048153 224 SY 225 (257)
Q Consensus 224 ~l 225 (257)
++
T Consensus 566 ~l 567 (567)
T 1dce_A 566 LT 567 (567)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=5.4e-18 Score=128.04 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=114.5
Q ss_pred ccCcccCcEeeCcCCcccccCCh------hhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhh
Q 048153 18 VDGLSQLSHLILAHNNLEGKVPV------QLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVK 91 (257)
Q Consensus 18 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 91 (257)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.++++ | .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-cccc-----------------------
Confidence 45556777777887777766665 788888888888888888752 2 2211
Q ss_pred hhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccC
Q 048153 92 NIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171 (257)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 171 (257)
+++|++|++++|.++ .+|..+..+++|+.|++++|.+++. + .+..+++
T Consensus 69 -----------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 69 -----------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN 116 (198)
T ss_dssp -----------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred -----------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence 567888888888887 5566666678888999998888853 3 5777888
Q ss_pred CCEEEccCCcccccCC-hhhhcCCCCCEEEccCCcccCCCCh----------hhhhccCCCeeccccCccc
Q 048153 172 IESLDLSYNQLNGKIP-LQLVELNTLAVFSVAHNNLSGKIPE----------WTAQFATFSESSYEGNHFL 231 (257)
Q Consensus 172 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~~~~~L~~l~l~~n~~~ 231 (257)
|+.|++++|++++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.++ +|++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9999999998874332 4677888899999999988765443 367788888886 66654
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=2.2e-17 Score=124.72 Aligned_cols=148 Identities=24% Similarity=0.293 Sum_probs=119.5
Q ss_pred EEEcccccccccCCc------cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccc
Q 048153 2 ILDLSYNRLNGSIPD------LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESY 75 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 75 (257)
.++++.+.+.+..|. .++.+++|++|++++|.+++ +| .+..+++|++|++++|.++.+ |..+.
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~-------- 90 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA-------- 90 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHH--------
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhh--------
Confidence 356777888877776 89999999999999999995 56 889999999999999999742 22111
Q ss_pred cCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccC
Q 048153 76 SNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSH 155 (257)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 155 (257)
.+++|++|++++|.+++. | .+..+++|++|++++
T Consensus 91 --------------------------------------------~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 91 --------------------------------------------VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp --------------------------------------------HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESE
T ss_pred --------------------------------------------cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCC
Confidence 146799999999999864 4 578889999999999
Q ss_pred CccccCCC-ccccCccCCCEEEccCCcccccCCh----------hhhcCCCCCEEEccCCcccC
Q 048153 156 NDLIGTIP-STFSNLKHIESLDLSYNQLNGKIPL----------QLVELNTLAVFSVAHNNLSG 208 (257)
Q Consensus 156 n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~L~~L~L~~n~l~~ 208 (257)
|.+++..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.|| ++.+..
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99996443 5788899999999999999765443 378899999997 777763
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=6.6e-14 Score=102.88 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=82.1
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
.+.+++|++++|.+++..|..|..+++|++|++++|.++++.+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 35689999999999988899999999999999999999988888899999999999999999976666789999999999
Q ss_pred ccCCcccCCC
Q 048153 201 VAHNNLSGKI 210 (257)
Q Consensus 201 L~~n~l~~~~ 210 (257)
+++|.+....
T Consensus 109 L~~N~~~c~c 118 (170)
T 3g39_A 109 LLNNPWDCAC 118 (170)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCCCCCc
Confidence 9999998554
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.55 E-value=2e-14 Score=117.67 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=88.5
Q ss_pred ceEEcccC-ccccccCCCcCCCCCcCEEeccC-CccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153 125 SGLDLSCN-KLICHISPQIGNLTRIQTLNLSH-NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA 202 (257)
Q Consensus 125 ~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 202 (257)
..++++++ .++ .+|. +..+++|+.|++++ |.++++.+..|..+++|+.|++++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 777 4566 88888899999986 88988777888889999999999999988778888889999999999
Q ss_pred CCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153 203 HNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235 (257)
Q Consensus 203 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 235 (257)
+|++.+..+..+..++ |+.|++.+|+|.|+|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 9999866555555554 9999999999988876
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=1e-13 Score=102.27 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=80.7
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
.++|++|++++|.+++..|..|..+++|+.|++++|.++++.+..|..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 35689999999999988899999999999999999999988777889999999999999999966566689999999999
Q ss_pred ccCCcccCC
Q 048153 201 VAHNNLSGK 209 (257)
Q Consensus 201 L~~n~l~~~ 209 (257)
+++|.+...
T Consensus 112 L~~N~~~c~ 120 (174)
T 2r9u_A 112 LYNNPWDCE 120 (174)
T ss_dssp CCSSCBCTT
T ss_pred eCCCCcccc
Confidence 999999844
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=3.2e-16 Score=137.08 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=26.4
Q ss_pred CEEEccccccccc----CCccccCcccCcEeeCcCCcccc----cCChhhhCCCCCCeeeccCce
Q 048153 1 MILDLSYNRLNGS----IPDLVDGLSQLSHLILAHNNLEG----KVPVQLCRLNQLQLLDLSNNN 57 (257)
Q Consensus 1 ~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~ 57 (257)
++|+|++|.+++. ++..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 3566666665433 22233445555555555555431 222223344555555555544
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=6.9e-16 Score=134.99 Aligned_cols=108 Identities=11% Similarity=0.024 Sum_probs=50.9
Q ss_pred CCCcCEEeccCCccccCCCccccC-ccCCCEEEcc----CCccccc-----CChhhhcCCCCCEEEccCCc--ccCCCCh
Q 048153 145 LTRIQTLNLSHNDLIGTIPSTFSN-LKHIESLDLS----YNQLNGK-----IPLQLVELNTLAVFSVAHNN--LSGKIPE 212 (257)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~~~~ 212 (257)
+++|++|++..|.+++..+..+.. +++|+.|+++ .|++++. ++..+.++++|+.|+++.|. +.+..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 444444444444444333333332 4455555553 3444431 11223445555555554332 3333333
Q ss_pred hhhh-ccCCCeeccccCcccc-cCCCCC-ccCcccccccccCC
Q 048153 213 WTAQ-FATFSESSYEGNHFLC-GLPLPI-CRSPVTMLKASTTN 252 (257)
Q Consensus 213 ~~~~-~~~L~~l~l~~n~~~~-~~~~~~-~~~~l~~l~~~~~~ 252 (257)
.+.. +++|+.|++++|.+.. .++... ..+.|+.|++++|.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 3332 5667777777666543 122111 22667777777775
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=3.6e-13 Score=109.47 Aligned_cols=202 Identities=10% Similarity=0.068 Sum_probs=133.5
Q ss_pred cccCcEeeCcCCccc--------------------ccCChhhhC--------CCCCCeeeccCceecccCCCCCcCCc-c
Q 048153 21 LSQLSHLILAHNNLE--------------------GKVPVQLCR--------LNQLQLLDLSNNNLHGLIPPCFDNTT-L 71 (257)
Q Consensus 21 l~~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~-l 71 (257)
+++|+.|+|++|++. .....+|.+ +++|+.+++.+ .++.+.+..|..+. +
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999988 234456777 89999999988 78777778787654 6
Q ss_pred cccccCCCCCCCCcchhhhhhhhhhhcccchhhccccc-------cccccc-c------------------------ccc
Q 048153 72 HESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTT-------KNIAYT-Y------------------------QGR 119 (257)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~-~------------------------~~~ 119 (257)
..+....+.+..+....+.... .+..+.... ..+... + ...
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~-------~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSV-------TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTT-------CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred ceEEcCCCCccccchhhhcCCC-------ceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 6666666665544443332110 011111100 000000 0 000
Q ss_pred cccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCC-E
Q 048153 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLA-V 198 (257)
Q Consensus 120 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~ 198 (257)
...++..+.+.++-...........+++|+.+++++|.++.+...+|.++.+|+.+++.+| ++.....+|.++++|+ .
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 1223333433332111010001113789999999999999888889999999999999998 7767778899999999 9
Q ss_pred EEccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153 199 FSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232 (257)
Q Consensus 199 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 232 (257)
+++.+ .+....+.++.+|++|+.+++++|.+..
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 99998 7776777899999999999998887654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=4.7e-12 Score=105.43 Aligned_cols=232 Identities=11% Similarity=0.039 Sum_probs=144.6
Q ss_pred EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153 3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK 82 (257)
Q Consensus 3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~ 82 (257)
+++..+ +..+...+|.++ +|+.+.+.. .+......+|.++++|+.+++.+|.++.+....|....+..+... ..+.
T Consensus 140 i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~ 215 (401)
T 4fdw_A 140 VVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLK 215 (401)
T ss_dssp EECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCC
T ss_pred EEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-Cchh
Confidence 444333 554556667764 677777775 555566677888888888888888888777777765544444332 1222
Q ss_pred CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc---
Q 048153 83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI--- 159 (257)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--- 159 (257)
.+.... +.....|+.+.+..+-.........-..|+.+.+. +.+......+|.++++|+.+.+.+|.+.
T Consensus 216 ~I~~~a-------F~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 216 EIGSQA-------FLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp EECTTT-------TTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred eehhhH-------hhCCCCCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 222211 11112233333322210000111112468888884 4566577788899999999998887664
Q ss_pred --cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153 160 --GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP 237 (257)
Q Consensus 160 --~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 237 (257)
.+...+|.++++|+.+.+.+ .++.....+|.++.+|+.+.+..+ +......++..+ +|+.+.+.+|....-.+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 46777888889999999985 466566778888899999999655 665666778888 8999999988654422222
Q ss_pred C--ccCcccccccc
Q 048153 238 I--CRSPVTMLKAS 249 (257)
Q Consensus 238 ~--~~~~l~~l~~~ 249 (257)
+ |...++.+.+-
T Consensus 365 F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 365 WYGFPDDITVIRVP 378 (401)
T ss_dssp CCCSCTTCCEEEEC
T ss_pred ccCCCCCccEEEeC
Confidence 2 33445555443
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=1.4e-12 Score=106.73 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=92.7
Q ss_pred ccccceEEccc-CccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEE
Q 048153 121 VSYLSGLDLSC-NKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVF 199 (257)
Q Consensus 121 ~~~L~~L~ls~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 199 (257)
+++|++|++++ |.+++..+..|..+++|+.|+|++|.|+++.+.+|..+++|+.|+|++|++++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 56799999996 999988888999999999999999999999999999999999999999999966666666655 9999
Q ss_pred EccCCcccCCCC-hhhhhccCCCeeccccCcccccCCC
Q 048153 200 SVAHNNLSGKIP-EWTAQFATFSESSYEGNHFLCGLPL 236 (257)
Q Consensus 200 ~L~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~ 236 (257)
++++|.+...-. ..+..........+..+.+.|..|.
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 999999985433 2333333344455566777776665
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=4.8e-15 Score=122.31 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=20.2
Q ss_pred ccCcEeeCcCCcccccCChhhhCC-----CCCCeeeccCceec
Q 048153 22 SQLSHLILAHNNLEGKVPVQLCRL-----NQLQLLDLSNNNLH 59 (257)
Q Consensus 22 ~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~ 59 (257)
++|+.|++++|.++......+... ++|++|++++|.+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 114 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence 456666666666654333333222 45666666666553
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=3.1e-14 Score=117.44 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=35.2
Q ss_pred ccceEEcccCcccc----ccCCCcCCCCCcCEEeccCCccccCC----CccccCccCCCEEEccCCcccccC----Chhh
Q 048153 123 YLSGLDLSCNKLIC----HISPQIGNLTRIQTLNLSHNDLIGTI----PSTFSNLKHIESLDLSYNQLNGKI----PLQL 190 (257)
Q Consensus 123 ~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~ 190 (257)
.|++|++++|.++. .++..+..++.|++|++++|.++... ...+...++|+.|++++|.+++.. +..+
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 34555555554432 11222233444555555555444221 222333344555555555444321 1222
Q ss_pred hcCCCCCEEEccCCccc
Q 048153 191 VELNTLAVFSVAHNNLS 207 (257)
Q Consensus 191 ~~~~~L~~L~L~~n~l~ 207 (257)
...++|++|+|++|.+.
T Consensus 236 ~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 236 REHPSLELLHLYFNELS 252 (372)
T ss_dssp HHCSSCCEEECTTSSCC
T ss_pred HhCCCCCEEeccCCCCC
Confidence 23344555555555444
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.31 E-value=4.7e-11 Score=99.40 Aligned_cols=214 Identities=7% Similarity=-0.004 Sum_probs=150.8
Q ss_pred EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC
Q 048153 2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS 80 (257)
Q Consensus 2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~ 80 (257)
.+.+.. .+..+.+.+|.+|++|+.+++.+|.++.....+|. ..+|+.+.+..+ ++.+....|..+. +..+.... .
T Consensus 161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~ 236 (401)
T 4fdw_A 161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-N 236 (401)
T ss_dssp EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-T
T ss_pred EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-C
Confidence 355553 56667778999999999999999999866666676 588999999855 6667777776664 44444332 2
Q ss_pred CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccc-----cccCCCcCCCCCcCEEec
Q 048153 81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLI-----CHISPQIGNLTRIQTLNL 153 (257)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~-----~~~~~~~~~l~~L~~L~l 153 (257)
+..+....+.. ..++.+.+..+ +...... ..+++|+.+.+.++... ...+..|.++++|+.+.+
T Consensus 237 l~~I~~~aF~~--------~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 237 VSTIGQEAFRE--------SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CCEECTTTTTT--------CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ccCcccccccc--------CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 33222222211 12222222211 1111111 22678999999887664 466789999999999999
Q ss_pred cCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-CCCeeccccCccc
Q 048153 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-TFSESSYEGNHFL 231 (257)
Q Consensus 154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~ 231 (257)
. +.++.+...+|.++.+|+.+.+..+ ++.....+|.++ +|+.+++++|.+....+..+..++ +++.+.+..+.+.
T Consensus 308 ~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 308 P-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp C-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred C-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 9 4588788889999999999999765 665677889998 999999999998866667777774 7888888877544
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=2.5e-13 Score=118.73 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=27.2
Q ss_pred EEEcccc-ccccc-CCccccCcccCcEeeCcCCcccccCChhhh----CCCCCCeeeccCce
Q 048153 2 ILDLSYN-RLNGS-IPDLVDGLSQLSHLILAHNNLEGKVPVQLC----RLNQLQLLDLSNNN 57 (257)
Q Consensus 2 ~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~ 57 (257)
+|+|++| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 4556555 33321 233334566666666666655543332222 34455555555554
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=7.9e-13 Score=115.60 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=43.5
Q ss_pred CccccCccCCCEEEccCCcccccCCh-hhhcCCCCCEEEccCCcccCC-CChhhhhccCCCeecccc
Q 048153 163 PSTFSNLKHIESLDLSYNQLNGKIPL-QLVELNTLAVFSVAHNNLSGK-IPEWTAQFATFSESSYEG 227 (257)
Q Consensus 163 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~l~l~~ 227 (257)
+..+..+++|+.|++++|.+++.... .+..+++|++|++++| +.+. ++.....+++|++|++.+
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 33334678899999999987644332 3457899999999988 4422 223334588999998844
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.2e-09 Score=89.48 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=53.1
Q ss_pred CCCCcCEEeccCCccccCCCccc---cCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCCCChhhhh
Q 048153 144 NLTRIQTLNLSHNDLIGTIPSTF---SNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGKIPEWTAQ 216 (257)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 216 (257)
.+++|++|++.+|.+.+.....+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.+.+..-..++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46788888888887764332222 24678888888888877532 223345678888888888776443333333
Q ss_pred ccCCCeeccccCc
Q 048153 217 FATFSESSYEGNH 229 (257)
Q Consensus 217 ~~~L~~l~l~~n~ 229 (257)
.- ..++++++++
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 11 3567777765
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=1.3e-09 Score=89.29 Aligned_cols=162 Identities=13% Similarity=0.139 Sum_probs=101.8
Q ss_pred CccccCcccCcEeeCcCCccc---------ccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCc
Q 048153 15 PDLVDGLSQLSHLILAHNNLE---------GKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFE 85 (257)
Q Consensus 15 ~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~ 85 (257)
.++...+++|+.|.+...... +.+...+..+|+|+.|.++++.-.. .+. +.
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~------------------ 191 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-KP------------------ 191 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-CB------------------
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-cc------------------
Confidence 345667889999988765331 1233456788999999998872100 110 00
Q ss_pred chhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCc--CCCCCcCEEeccC--CccccC
Q 048153 86 TSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQI--GNLTRIQTLNLSH--NDLIGT 161 (257)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~--~~l~~L~~L~l~~--n~l~~~ 161 (257)
.++|++|++..+.+.......+ ..+++|++|+++. +...+.
T Consensus 192 -----------------------------------~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 192 -----------------------------------RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp -----------------------------------CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred -----------------------------------CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 4567888887776643222222 2577888888753 111111
Q ss_pred -----CCccc--cCccCCCEEEccCCcccccCChhhh---cCCCCCEEEccCCcccCC----CChhhhhccCCCeecccc
Q 048153 162 -----IPSTF--SNLKHIESLDLSYNQLNGKIPLQLV---ELNTLAVFSVAHNNLSGK----IPEWTAQFATFSESSYEG 227 (257)
Q Consensus 162 -----~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~l~l~~ 227 (257)
....+ ..+++|+.|++++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 11122 2468999999999988754433343 467899999999988753 334445678999999998
Q ss_pred Cccc
Q 048153 228 NHFL 231 (257)
Q Consensus 228 n~~~ 231 (257)
|.+.
T Consensus 317 n~i~ 320 (362)
T 2ra8_A 317 NYLS 320 (362)
T ss_dssp BBCC
T ss_pred CcCC
Confidence 8765
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=2.9e-09 Score=79.06 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=83.2
Q ss_pred ccccceEEcccC-cccc----ccCCCcCCCCCcCEEeccCCccccCC----CccccCccCCCEEEccCCccccc----CC
Q 048153 121 VSYLSGLDLSCN-KLIC----HISPQIGNLTRIQTLNLSHNDLIGTI----PSTFSNLKHIESLDLSYNQLNGK----IP 187 (257)
Q Consensus 121 ~~~L~~L~ls~n-~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~ 187 (257)
.+.|++|++++| .+.. .+...+...+.|++|++++|.+.... ...+...++|++|++++|.+.+. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 567999999998 7752 23345666788999999999987533 33445557899999999999864 34
Q ss_pred hhhhcCCCCCEEEc--cCCcccCCC----ChhhhhccCCCeeccccCccc
Q 048153 188 LQLVELNTLAVFSV--AHNNLSGKI----PEWTAQFATFSESSYEGNHFL 231 (257)
Q Consensus 188 ~~~~~~~~L~~L~L--~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~ 231 (257)
..+...++|++|++ ++|.+...- ...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 55666789999999 889987543 344555689999999999764
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=1.1e-08 Score=74.47 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=41.1
Q ss_pred CcCEEeccCCccccCCCccccCccCCCEEEccCCc-ccccCChhhhcC----CCCCEEEccCCc-ccCCCChhhhhccCC
Q 048153 147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVEL----NTLAVFSVAHNN-LSGKIPEWTAQFATF 220 (257)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~~~~L 220 (257)
.|++|++++|.++...-..+..+++|+.|++++|. +++.....+..+ ++|++|++++|. +++.--..++.+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444444555555555555553 444333333332 245555555553 443333344455555
Q ss_pred CeeccccCc
Q 048153 221 SESSYEGNH 229 (257)
Q Consensus 221 ~~l~l~~n~ 229 (257)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=9.5e-09 Score=80.28 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCCCcCEEeccCCccccC--CCccccCccCCCEEEccCCcccccCChhhhcCC--CCCEEEccCCcccCCCC-------h
Q 048153 144 NLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELN--TLAVFSVAHNNLSGKIP-------E 212 (257)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~-------~ 212 (257)
.+++|+.|++++|.++++ .+..+..+++|+.|++++|++++. ..+..+. +|+.|+|++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 355666666666666642 234445566666666666666543 1222222 66666666666654443 1
Q ss_pred hhhhccCCCeec
Q 048153 213 WTAQFATFSESS 224 (257)
Q Consensus 213 ~~~~~~~L~~l~ 224 (257)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666553
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.61 E-value=1.1e-06 Score=72.81 Aligned_cols=86 Identities=9% Similarity=0.034 Sum_probs=58.6
Q ss_pred CCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccC
Q 048153 140 PQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFAT 219 (257)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 219 (257)
..|..+.+|+.+.+..+ ++.+...+|..+.+|+.+++..+ ++.....+|.++.+|+.+++..+ +...-..++.+|.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 45666777777777544 55466667777777887777654 55455667777778888877766 55455567777778
Q ss_pred CCeeccccC
Q 048153 220 FSESSYEGN 228 (257)
Q Consensus 220 L~~l~l~~n 228 (257)
|+.+.+..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 887777654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=1.4e-08 Score=79.32 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=74.8
Q ss_pred cCCCCCcCE--EeccCCccc---cCCCccccCccCCCEEEccCCcccc--cCChhhhcCCCCCEEEccCCcccCCCChhh
Q 048153 142 IGNLTRIQT--LNLSHNDLI---GTIPSTFSNLKHIESLDLSYNQLNG--KIPLQLVELNTLAVFSVAHNNLSGKIPEWT 214 (257)
Q Consensus 142 ~~~l~~L~~--L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 214 (257)
+...+.|+. ++++.|... .........++.|+.|++++|++++ .++..+..+++|+.|+|++|++.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 333444444 566666433 2222222467899999999999996 3456677899999999999999965 334
Q ss_pred hhcc--CCCeeccccCcccccCCCC-------C-ccCccccccccc
Q 048153 215 AQFA--TFSESSYEGNHFLCGLPLP-------I-CRSPVTMLKAST 250 (257)
Q Consensus 215 ~~~~--~L~~l~l~~n~~~~~~~~~-------~-~~~~l~~l~~~~ 250 (257)
..+. +|++|++++|++...+|.. + ..+.|+.||...
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 4454 9999999999987766632 1 557788887654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=1.3e-08 Score=75.45 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=86.4
Q ss_pred CCCcCCCCCcCEEeccCC-ccccC----CCccccCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCC
Q 048153 139 SPQIGNLTRIQTLNLSHN-DLIGT----IPSTFSNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGK 209 (257)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~ 209 (257)
...+...+.|++|++++| .+... ....+...++|++|++++|.+.+.. ...+...++|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667889999999999 88753 2344556689999999999997543 34455668999999999999854
Q ss_pred ----CChhhhhccCCCeecc--ccCcccccCCCCC-----ccCcccccccccCCc
Q 048153 210 ----IPEWTAQFATFSESSY--EGNHFLCGLPLPI-----CRSPVTMLKASTTNK 253 (257)
Q Consensus 210 ----~~~~~~~~~~L~~l~l--~~n~~~~~~~~~~-----~~~~l~~l~~~~~~~ 253 (257)
+...+...++|++|++ ++|.+..+....+ ....+++|++++|..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3455666789999999 8898765432222 347899999998863
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.42 E-value=1.2e-05 Score=66.71 Aligned_cols=126 Identities=11% Similarity=0.147 Sum_probs=85.4
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
...|+.+.+..+.. .....+|..++.|+.+.+. +.++.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.
T Consensus 264 c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 34567777755433 3556678888889998886 4566577788999999999999875 5546677899999999999
Q ss_pred ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCC
Q 048153 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTN 252 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~ 252 (257)
+..+ ++..-..++.+|.+|+.+.+.++..... .-.....++.+.+..+.
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~--~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN--AISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH--TCBCCCCC---------
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCceeehh--hhhccCCCCEEEeCCCC
Confidence 9765 6645567889999999999998854432 11233567776665543
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.39 E-value=1.5e-05 Score=66.10 Aligned_cols=110 Identities=6% Similarity=0.101 Sum_probs=81.7
Q ss_pred ccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh
Q 048153 137 HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ 216 (257)
Q Consensus 137 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 216 (257)
.-..+|..+..|+.+.+..+..+ +...+|..++.|+.+.+.. .++......|.++.+|+.+++..+ ++..-..++.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 44557888899999998766544 6777888999999999974 455466678899999999999865 65455678889
Q ss_pred ccCCCeeccccCcccccCCCCC--ccCcccccccccC
Q 048153 217 FATFSESSYEGNHFLCGLPLPI--CRSPVTMLKASTT 251 (257)
Q Consensus 217 ~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~l~~~~~ 251 (257)
|.+|+.+.+.++ ...+...- -...|+.+++..+
T Consensus 333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 999999999765 33444332 2267777776654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.2e-07 Score=69.03 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=69.8
Q ss_pred cccceEEcccCccccccCCCcCCCCCcCEEeccCCc-cccCCCccccCc----cCCCEEEccCCc-ccccCChhhhcCCC
Q 048153 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND-LIGTIPSTFSNL----KHIESLDLSYNQ-LNGKIPLQLVELNT 195 (257)
Q Consensus 122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 195 (257)
..|++|+++++.++..--..+.++++|++|++++|. +++..-..+..+ ++|+.|++++|. +++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999998875444556889999999999995 876655566653 489999999985 88776777888999
Q ss_pred CCEEEccCCccc
Q 048153 196 LAVFSVAHNNLS 207 (257)
Q Consensus 196 L~~L~L~~n~l~ 207 (257)
|++|++++|.-.
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 999999999633
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=1.6e-05 Score=65.86 Aligned_cols=207 Identities=10% Similarity=0.027 Sum_probs=103.1
Q ss_pred ccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhh
Q 048153 10 LNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFL 89 (257)
Q Consensus 10 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 89 (257)
++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+....|..+...........+..+....+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 44455678999999999999754 66566778999999999999765 55555566655442211111111211111111
Q ss_pred hhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCc
Q 048153 90 VKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNL 169 (257)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 169 (257)
... ..................-....+|+.+.+..+. .......|.++.+|+.+.+..+ ++.+...+|..+
T Consensus 137 ~~~-------~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 137 KGC-------DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp TTC-------CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred ecc-------cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 000 0000000000000000000114556666665443 3345556666777777766554 333444455555
Q ss_pred cCCCEEEccCCcc---------------------cccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccC
Q 048153 170 KHIESLDLSYNQL---------------------NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGN 228 (257)
Q Consensus 170 ~~L~~L~l~~n~l---------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n 228 (257)
..|+.+.+..+.. +......+..+..++.+.+..+... .....+..+..++.+....+
T Consensus 208 ~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 208 ILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp TTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred cccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 5555555444322 1122334445556666666555333 44445555666665554443
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.19 E-value=3.5e-06 Score=58.42 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=29.7
Q ss_pred EEeccCCccc-cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCccc
Q 048153 150 TLNLSHNDLI-GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207 (257)
Q Consensus 150 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 207 (257)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5555666554 12332221 24666666666666444445555666666666666554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.14 E-value=3.3e-05 Score=63.56 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=38.6
Q ss_pred CCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc
Q 048153 139 SPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA 218 (257)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 218 (257)
..+|..+..|+.+.+..+ +..+...+|..+.+|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..-..++.+|.
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 334444445555444322 33233444444455555555444444333444445555555555432 3323334444455
Q ss_pred CCCeeccc
Q 048153 219 TFSESSYE 226 (257)
Q Consensus 219 ~L~~l~l~ 226 (257)
+|+.+.+.
T Consensus 334 ~L~~i~ip 341 (379)
T 4h09_A 334 ALSTISYP 341 (379)
T ss_dssp TCCCCCCC
T ss_pred CCCEEEEC
Confidence 55555443
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=7.2e-05 Score=61.48 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=72.5
Q ss_pred ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200 (257)
Q Consensus 121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 200 (257)
...++.+.+..+ +.......|.++.+|+.+.+..+.++.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 456777777553 55466678999999999999998888788889999999999999765 6646677899999999998
Q ss_pred ccCCcccCCCChhhhhcc
Q 048153 201 VAHNNLSGKIPEWTAQFA 218 (257)
Q Consensus 201 L~~n~l~~~~~~~~~~~~ 218 (257)
+..+ ++..-..++.++.
T Consensus 340 ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 340 YPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCTT-CCEECTTTTTTSS
T ss_pred ECCc-cCEEchhHhhCCC
Confidence 8655 5434445565553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=1.8e-05 Score=58.59 Aligned_cols=109 Identities=7% Similarity=0.077 Sum_probs=75.2
Q ss_pred ccccceEEcccC-cccc----ccCCCcCCCCCcCEEeccCCccccCCCcc----ccCccCCCEEEccCCcccccCC----
Q 048153 121 VSYLSGLDLSCN-KLIC----HISPQIGNLTRIQTLNLSHNDLIGTIPST----FSNLKHIESLDLSYNQLNGKIP---- 187 (257)
Q Consensus 121 ~~~L~~L~ls~n-~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~---- 187 (257)
-+.|++|++++| .+.. .+...+...+.|+.|++++|.+......+ +..-.+|++|+++.|+|.+...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456889999885 6542 23445667788999999999988543333 3455789999999999976433
Q ss_pred hhhhcCCCCCEEEccCCcc---cC----CCChhhhhccCCCeeccccCc
Q 048153 188 LQLVELNTLAVFSVAHNNL---SG----KIPEWTAQFATFSESSYEGNH 229 (257)
Q Consensus 188 ~~~~~~~~L~~L~L~~n~l---~~----~~~~~~~~~~~L~~l~l~~n~ 229 (257)
..+..-..|+.|+|++|.. .. .+...+..-++|+.++++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3445567899999986533 32 233445556789999988764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00086 Score=46.21 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=17.3
Q ss_pred cCEEeccCCccccCCCccccCccCCCEEEccCCc
Q 048153 148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181 (257)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 181 (257)
|++|+|++|.|+.+.+..|..+++|+.|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555554444445555555555555553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.0004 Score=51.39 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=75.9
Q ss_pred CcCCCCCcCEEeccCC-ccccC----CCccccCccCCCEEEccCCcccccCC----hhhhcCCCCCEEEccCCcccCCCC
Q 048153 141 QIGNLTRIQTLNLSHN-DLIGT----IPSTFSNLKHIESLDLSYNQLNGKIP----LQLVELNTLAVFSVAHNNLSGKIP 211 (257)
Q Consensus 141 ~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~ 211 (257)
.+..-+.|+.|++++| .+... ..+++..-.+|+.|++++|++.+... ..+...+.|++|+|++|.+.+.-.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455678999999986 77642 33445566799999999999986433 344567899999999999985333
Q ss_pred ----hhhhhccCCCeeccccCcc---cccC----CCCC-ccCcccccccccCC
Q 048153 212 ----EWTAQFATFSESSYEGNHF---LCGL----PLPI-CRSPVTMLKASTTN 252 (257)
Q Consensus 212 ----~~~~~~~~L~~l~l~~n~~---~~~~----~~~~-~~~~l~~l~~~~~~ 252 (257)
+.+..-..|++|++++|.. -... -.-. .+++++.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3344456899999986532 2111 1111 45778888877654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.92 E-value=4.9 Score=25.72 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=27.1
Q ss_pred cccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCC
Q 048153 134 LICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180 (257)
Q Consensus 134 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 180 (257)
++.+-...|.++..|+.+.+..+ ++.+...+|..+.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33344456666777777666554 33355566666666666666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.22 E-value=10 Score=24.14 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=34.5
Q ss_pred CccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCC
Q 048153 156 NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN 204 (257)
Q Consensus 156 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 204 (257)
..++.+...+|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3456666777888888888888775 44355667788888888888764
Done!