BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048157
(982 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0C|A Chain A, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0F|X Chain X, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0F|A Chain A, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0D|X Chain X, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
pdb|3Q0D|A Chain A, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
Length = 167
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 108/160 (67%), Gaps = 33/160 (20%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKG-KILATSIVASGGYDDNLDNSD 617
G+VPGVEVGDEFQYR+ELN++G+H Q GIDY+K G +++ATSIV+SGGY+D LDNSD
Sbjct: 4 GTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSD 63
Query: 618 VLIYTGQGGNV--MNGGKEPEDQKLERGNLALANSIHEQNP------------------- 656
VLIYTGQGGNV + P+DQ+L GNLAL NSI+++NP
Sbjct: 64 VLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAK 123
Query: 657 -----------RYWQDVGSHGKLVFKFKLARIPGQPELSW 685
YW++ GSHGKLVFKFKL RIPGQPEL W
Sbjct: 124 NYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPW 163
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna
Complex In Space Group P42212
Length = 167
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 106/160 (66%), Gaps = 33/160 (20%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKG-KILATSIVASGGYDDNLDNSD 617
G+VPGVEVGDEFQYR ELN++G+H Q GIDY K G +++ATSIV+SGGY+D LDNSD
Sbjct: 4 GTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDYXKDDGGELVATSIVSSGGYNDVLDNSD 63
Query: 618 VLIYTGQGGNV--MNGGKEPEDQKLERGNLALANSIHEQNP------------------- 656
VLIYTGQGGNV + P+DQ+L GNLAL NSI+++NP
Sbjct: 64 VLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAK 123
Query: 657 -----------RYWQDVGSHGKLVFKFKLARIPGQPELSW 685
YW++ GSHGKLVFKFKL RIPGQPEL W
Sbjct: 124 NYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPW 163
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 151/292 (51%), Gaps = 47/292 (16%)
Query: 698 EGLCVDDISQGKELIPICAVNTVDDEK-PPSFKYI-----TNIIYPDWCRPVPP-KGCDC 750
E + D+++G E +PI VN VD E P +KYI T+ + D R + + C C
Sbjct: 7 EKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNID--RNITHLQHCTC 64
Query: 751 TNGCSELGKCACVAKNGGELPYNHNGAIVQA-----KPLVYECGPSCKCPPSCYNRVSQQ 805
+ CS C C + Y+ +G ++Q PL++EC +C C +C NRV Q
Sbjct: 65 VDDCSS-SNCLC-GQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQS 122
Query: 806 GIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNY 865
GIK +L++++T GWGVR+L +IP G+FICEY GEL+ + EA+ R +D YLFD+ N
Sbjct: 123 GIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-EDDSYLFDLDN-- 179
Query: 866 NDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDH 925
DG + + IDA YGN+ RF+NH C PN+ V H
Sbjct: 180 KDGEV-----------------------YCIDARYYGNISRFINHLCDPNIIPVRVFMLH 216
Query: 926 EDKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSEC 977
+D R P I F++ +I +EL + Y D+ +D K +C CGS +C
Sbjct: 217 QDLRFPRIAFFSSRDIRTGEELGFDYG---DRFWDIKS--KYFTCQCGSEKC 263
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 151/292 (51%), Gaps = 47/292 (16%)
Query: 698 EGLCVDDISQGKELIPICAVNTVDDEK-PPSFKYI-----TNIIYPDWCRPVPP-KGCDC 750
E + D+++G E +PI VN VD E P +KYI T+ + D R + + C C
Sbjct: 9 EKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNID--RNITHLQHCTC 66
Query: 751 TNGCSELGKCACVAKNGGELPYNHNGAIVQA-----KPLVYECGPSCKCPPSCYNRVSQQ 805
+ CS C C + Y+ +G ++Q PL++EC +C C +C NRV Q
Sbjct: 67 VDDCSS-SNCLC-GQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQS 124
Query: 806 GIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNY 865
GIK +L++++T GWGVR+L +IP G+FICEY GEL+ + EA+ R +D YLFD+ N
Sbjct: 125 GIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-EDDSYLFDLDN-- 181
Query: 866 NDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDH 925
DG + + IDA YGN+ RF+NH C PN+ V H
Sbjct: 182 KDGEV-----------------------YCIDARYYGNISRFINHLCDPNIIPVRVFMLH 218
Query: 926 EDKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSEC 977
+D R P I F++ +I +EL + Y D+ +D K +C CGS +C
Sbjct: 219 QDLRFPRIAFFSSRDIRTGEELGFDYG---DRFWDIKS--KYFTCQCGSEKC 265
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 146/289 (50%), Gaps = 53/289 (18%)
Query: 704 DISQGKELIPICAVNTVDDEKPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 750
DI++G E IPI VN VD E PS +KY++ NI + +C V C
Sbjct: 32 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYC--VCIDDCSS 89
Query: 751 TNG-CSELGKCACVAKNGGELP-YNHNGAIVQAKPLVYECGPSCKCPPSCYNRVSQQGIK 808
+N C +L K+G LP +N + PL++EC +C C +C NRV Q G++
Sbjct: 90 SNCMCGQLSMRCWYDKDGRLLPEFN-----MAEPPLIFECNHACSCWRNCRNRVVQNGLR 144
Query: 809 FQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDG 868
+L++++T GWGVRSL IP G+F+CEY GEL+ + EA+ R D YLFD+ N DG
Sbjct: 145 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--KDG 201
Query: 869 SLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDK 928
+ + IDA YGNV RF+NH C PNL V H+D
Sbjct: 202 EV-----------------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDL 238
Query: 929 RMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSEC 977
R P I F+ I ++L + Y ++ +D G K SC CGS +C
Sbjct: 239 RFPRIAFFSTRLIEAGEQLGFDYG---ERFWDIKG--KLFSCRCGSPKC 282
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 147/291 (50%), Gaps = 57/291 (19%)
Query: 704 DISQGKELIPICAVNTVDDEKPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 750
DI++G E IPI VN VD E PS +KY++ NI + +C + DC
Sbjct: 34 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCID----DC 89
Query: 751 TNG---CSELGKCACVAKNGGELP-YNHNGAIVQAKPLVYECGPSCKCPPSCYNRVSQQG 806
++ C +L K+G LP +N + PL++EC +C C +C NRV Q G
Sbjct: 90 SSSNCMCGQLSMRCWYDKDGRLLPEFN-----MAEPPLIFECNHACSCWRNCRNRVVQNG 144
Query: 807 IKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYN 866
++ +L++++T GWGVRSL IP G+F+CEY GEL+ + EA+ R D YLFD+ N
Sbjct: 145 LRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--K 201
Query: 867 DGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHE 926
DG + + IDA YGNV RF+NH C PNL V H+
Sbjct: 202 DGEV-----------------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQ 238
Query: 927 DKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSEC 977
D R P I F+ I ++L + Y ++ +D G K SC CGS +C
Sbjct: 239 DLRFPRIAFFSTRLIEAGEQLGFDYG---ERFWDIKG--KLFSCRCGSPKC 284
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 147/291 (50%), Gaps = 57/291 (19%)
Query: 704 DISQGKELIPICAVNTVDDEKPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 750
DI++G E IPI VN VD E PS +KY++ NI + +C + DC
Sbjct: 8 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCID----DC 63
Query: 751 TNG---CSELGKCACVAKNGGELP-YNHNGAIVQAKPLVYECGPSCKCPPSCYNRVSQQG 806
++ C +L K+G LP +N + PL++EC +C C +C NRV Q G
Sbjct: 64 SSSNCMCGQLSMRCWYDKDGRLLPEFN-----MAEPPLIFECNHACSCWRNCRNRVVQNG 118
Query: 807 IKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYN 866
++ +L++++T GWGVRSL IP G+F+CEY GEL+ + EA+ R D YLFD+ N
Sbjct: 119 LRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--K 175
Query: 867 DGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHE 926
DG + + IDA YGNV RF+NH C PNL V H+
Sbjct: 176 DGEV-----------------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQ 212
Query: 927 DKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSEC 977
D R P I F+ I ++L + Y ++ +D G K SC CGS +C
Sbjct: 213 DLRFPRIAFFSTRLIEAGEQLGFDYG---ERFWDIKG--KLFSCRCGSPKC 258
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 146/291 (50%), Gaps = 57/291 (19%)
Query: 704 DISQGKELIPICAVNTVDDEKPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 750
DI++G E IPI VN VD E PS +KY++ NI + +C + DC
Sbjct: 33 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCID----DC 88
Query: 751 TNG---CSELGKCACVAKNGGELP-YNHNGAIVQAKPLVYECGPSCKCPPSCYNRVSQQG 806
++ C +L K+G LP +N + PL++EC +C C +C NRV Q G
Sbjct: 89 SSSNCMCGQLSMRCWYDKDGRLLPEFN-----MAEPPLIFECNHACSCWRNCRNRVVQNG 143
Query: 807 IKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYN 866
++ +L++++T GWGVRSL IP G+F+CEY GEL+ + EA+ R D YLFD+ N
Sbjct: 144 LRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--K 200
Query: 867 DGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHE 926
DG + + IDA YGNV RF+NH C PNL V H+
Sbjct: 201 DGEV-----------------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQ 237
Query: 927 DKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSEC 977
D R P I F+ I ++L + ++ +D G K SC CGS +C
Sbjct: 238 DLRFPRIAFFSTRLIEAGEQLGFDAG---ERFWDIKG--KLFSCRCGSPKC 283
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 134/287 (46%), Gaps = 58/287 (20%)
Query: 718 NTVDDEKPPS-FKYITNIIYPDWCRPVP--------PKGCDCTNGCSELGKCACVAKNGG 768
NTVD E PPS F YI +P P GC CT+ KC C A+ G
Sbjct: 48 NTVDLEGPPSDFYYINEY------KPAPGISLVNEATFGCSCTD--CFFQKC-CPAEAGV 98
Query: 769 ELPYNHNGAI-VQAKPLVYECGPSCKCPPSCYNRVSQQGIKFQLEIFKTE-ARGWGVRSL 826
L YN N I + +YEC C+C P C NR+ Q+G ++ L IF+T RGWGV++L
Sbjct: 99 LLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTL 158
Query: 827 NSIPSGSFICEYAGELLEEKEAERR-----TSNDEYLFDIGNNYNDGSLWGGLSNVMPDA 881
I SF+ EY GE++ +EAERR YLFD+
Sbjct: 159 VKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLD------------------- 199
Query: 882 PSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENI 941
E FT+DA YGNV FVNHSC PNL NV D+ D R+P I LF+ I
Sbjct: 200 -------YESDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTI 252
Query: 942 PPLQELTYHY------NYVIDQVYDSSGNIKKKS-CFCGSSECTGRL 981
+ELT+ Y + D + S + ++ C CG+ C G L
Sbjct: 253 NAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 147/296 (49%), Gaps = 54/296 (18%)
Query: 714 ICAVNTVDDEKPPS--FKYITN------IIYPDWCRPVPPKGCDCTN--GC--SELGKCA 761
+ VN VDDE PS F++I+ +I PD P GC+C++ GC + +C
Sbjct: 30 VTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPD---PNFQSGCNCSSLGGCDLNNPSRCE 86
Query: 762 CV--AKNGGELPYNHNGAI-VQAKPLVYECGPSCKCPPSCYNRVSQQGIKFQLEIFKTEA 818
C+ Y+ G + ++YEC C C C NRV Q+G LEIFKT+
Sbjct: 87 CLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKE 146
Query: 819 RGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDE-----YLFDIGNNYNDGSLWGG 873
+GWGVRSL P+G+FI Y GE++ EA +R N + YLFD+ + ++D S
Sbjct: 147 KGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDL-DMFDDAS---- 201
Query: 874 LSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHI 933
+T+DA YG+V RF NHSCSPN+ + + +H + + +
Sbjct: 202 -------------------EYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDL 242
Query: 934 MLFAAENIPPLQELTYHYNYVID----QVYDSSGN-IKK--KSCFCGSSECTGRLY 982
FA ++I PL+ELT+ Y D Q S N I K + C CGS+ C G L+
Sbjct: 243 AFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 125/253 (49%), Gaps = 46/253 (18%)
Query: 747 GCDCTNGCSELGKCACVAKNGGELPYNHNGAIVQ-------AKPLVYECGPSCKCPPSCY 799
GC C G C+C+ ++G Y+ N + A+P V+EC C+C C
Sbjct: 61 GCICVKTPCLPGTCSCL-RHGEN--YDDNSCLRDIGSGGKYAEP-VFECNVLCRCSDHCR 116
Query: 800 NRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRT-----SN 854
NRV Q+G++F ++FKT +GWG+R+L IP G F+CEYAGE+L E +RR S+
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSD 176
Query: 855 DEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSP 914
Y+ I + +G + +D GN+GRF+NHSC P
Sbjct: 177 SNYIIAIREHVYNGQVMETF---------------------VDPTYIGNIGRFLNHSCEP 215
Query: 915 NLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYN--YVIDQVYDSSGNIK----KK 968
NL V D +P + LFAA++I P +EL+Y Y+ Y+ V S + +K
Sbjct: 216 NLLMIPV---RIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRK 272
Query: 969 SCFCGSSECTGRL 981
C+CG+ CT L
Sbjct: 273 PCYCGAKSCTAFL 285
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 26/216 (12%)
Query: 778 IVQAKPLVYECGPSCKCPPSCYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICE 837
++Q++ +YEC C C C NRV ++G L+IF+T+ RGWGV+ +I G F+
Sbjct: 102 VLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDR 161
Query: 838 YAGELLEEKEAERRTS-------NDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVVE 890
Y GE++ +EA+RR + D YLF + + ++D P S ++
Sbjct: 162 YLGEIITSEEADRRRAESTIARRKDVYLFAL-DKFSD--------------PDSLDPLLA 206
Query: 891 DGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYH 950
+D RF+NHSC PN+ + DH DK + + LFA ++IP ELT+
Sbjct: 207 GQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFD 266
Query: 951 Y----NYVIDQVYDSSGNIKKKSCFCGSSECTGRLY 982
Y + +D S + C CG+++C G L+
Sbjct: 267 YVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYLW 302
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 87/198 (43%), Gaps = 33/198 (16%)
Query: 784 LVYECGPSCKCPPSCYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELL 843
L+ EC C C NR Q+ +E+ TE +GWG+R+ +PS +F+ EY GE+L
Sbjct: 92 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVL 151
Query: 844 EEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGN 903
+ KE + R + N N + L N IDA + GN
Sbjct: 152 DHKEFKARVK------EYARNKNIHYYFMALKN----------------DEIIDATQKGN 189
Query: 904 VGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSG 963
RF+NHSC PN Q + + + + F + +P ELT+ Y + Q Y
Sbjct: 190 CSRFMNHSCEPNCETQKWTVNGQLR----VGFFTTKLVPSGSELTFDYQF---QRYGKEA 242
Query: 964 NIKKKSCFCGSSECTGRL 981
+ CFCGS+ C G L
Sbjct: 243 ----QKCFCGSANCRGYL 256
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 118/263 (44%), Gaps = 46/263 (17%)
Query: 721 DDEKPPSFKYITNIIYPDWCRPVPPKGCDCTNGCSELGKCACVAKNGGELPYNHNGAIVQ 780
+D+KPP +K+I RP+ T SE+ +C C A + E P + +
Sbjct: 13 NDKKPPPYKHIKVN------RPIGRVQIF-TADLSEIPRCNCKATD--ENPCGIDSECIN 63
Query: 781 AKPLVYECGPSCKCPPS--CYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEY 838
+ L+YEC P+ CP C N+ + ++EIF+T RGWG+R+ I G F+ EY
Sbjct: 64 -RMLLYECHPT-VCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEY 121
Query: 839 AGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDA 898
GEL++E+E R + DI N Y + D IDA
Sbjct: 122 VGELIDEEECRARIRYAQE-HDITNFYM---------------------LTLDKDRIIDA 159
Query: 899 VEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQV 958
GN RF+NH C PN Q + + + + LFA +I ELT++YN
Sbjct: 160 GPKGNYARFMNHCCQPNCETQKWSVNGDTR----VGLFALSDIKAGTELTFNYN------ 209
Query: 959 YDSSGNIKKKSCFCGSSECTGRL 981
+ GN K C CG+ C+G L
Sbjct: 210 LECLGN-GKTVCKCGAPNCSGFL 231
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 37/201 (18%)
Query: 782 KPLVYECGP-SCKCPPSCYNRVSQQGIKFQ-LEIFKTEARGWGVRSLNSIPSGSFICEYA 839
+ + EC P +C C C N+ Q+ Q LE F+ E +GWG+R+ + +G FI EY
Sbjct: 45 RMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYL 104
Query: 840 GELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAV 899
GE++ E+E R + + +N++D + D G ID+
Sbjct: 105 GEVVSEQEFRNR------MIEQYHNHSDHYC-----------------LNLDSGMVIDSY 141
Query: 900 EYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQVY 959
GN RF+NHSC PN Q + + I L+A +++P ELTY YN+
Sbjct: 142 RMGNEARFINHSCDPNCEMQKWSVNG----VYRIGLYALKDMPAGTELTYDYNF------ 191
Query: 960 DSSGNIKKKS-CFCGSSECTG 979
S N++K+ C CG +C G
Sbjct: 192 -HSFNVEKQQLCKCGFEKCRG 211
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 33/169 (19%)
Query: 813 IFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWG 872
++++ G G+ +I +G + EYAG ++ + ++R Y D G
Sbjct: 56 VYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKR-----------EKYYDSKGIG 104
Query: 873 GLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPH 932
+ D+ +DA +GN RF+NHSC PN Y++ + D + H
Sbjct: 105 CYMFRIDDSE------------VVDATMHGNAARFINHSCEPNCYSRVINIDGQK----H 148
Query: 933 IMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSECTGRL 981
I++FA I +ELTY Y + I+ D+S K C CG+ +C L
Sbjct: 149 IVIFAMRKIYRGEELTYDYKFPIE---DASN---KLPCNCGAKKCRKFL 191
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKD|B Chain B, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKE|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKF|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKG|A Chain A, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|B Chain B, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|C Chain C, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|D Chain D, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
Length = 210
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PGV VG +++RV+++ G+H GI + G A S+V +GGY+D++DN +
Sbjct: 21 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGNY 77
Query: 619 LIYTGQGGNVMNGGK----EPEDQKLERGNLALANSIH 652
YTG GG ++G K + DQKL N ALA + H
Sbjct: 78 FTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCH 115
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg,
Crystal Structure In Space Group C222(1)
Length = 212
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PGV VG +++RV+++ G+H GI + G A S+V +GGY+D++DN +
Sbjct: 8 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGNY 64
Query: 619 LIYTGQGGNVMNGGK----EPEDQKLERGNLALANSIH 652
YTG GG ++G K + DQKL N ALA + H
Sbjct: 65 FTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCH 102
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1
pdb|2ZO1|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 2
pdb|2ZO2|B Chain B, Mouse Np95 Sra Domain Non-Specific Dna Complex
pdb|3F8I|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3F8I|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3FDE|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
pdb|3FDE|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
Length = 212
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PGV VG +++RV+++ G+H GI + G A S+V +GGY+D++DN +
Sbjct: 8 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGNY 64
Query: 619 LIYTGQGGNVMNGGK----EPEDQKLERGNLALANSIH 652
YTG GG ++G K + DQKL N ALA + H
Sbjct: 65 FTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCH 102
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1
Protein
Length = 239
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PG+ VG +++RV+++ G+H GI + G A S+V +GGY+D++D+ +
Sbjct: 15 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 71
Query: 619 LIYTGQGGNVMNGGKEPE----DQKLERGNLALA 648
YTG GG ++G K DQKL N ALA
Sbjct: 72 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALA 105
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf1
Length = 212
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PG+ VG +++RV+++ G+H GI + G A S+V +GGY+D++D+ +
Sbjct: 7 GPIPGIPVGTXWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 63
Query: 619 LIYTGQGGNVMNGGKEPE----DQKLERGNLALA 648
YTG GG ++G K DQKL N ALA
Sbjct: 64 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALA 97
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain
Length = 208
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PG+ VG +++RV+++ G+H GI + G A S+V +GGY+D++D+ +
Sbjct: 10 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 66
Query: 619 LIYTGQGGNVMNGGKEPE----DQKLERGNLALA 648
YTG GG ++G K DQKL N ALA
Sbjct: 67 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALA 100
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|B Chain B, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|C Chain C, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|D Chain D, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
Length = 212
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PG+ VG +++RV+++ G+H GI + G A S+V +GGY+D++D+ +
Sbjct: 7 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 63
Query: 619 LIYTGQGGNVMNGGKEPE----DQKLERGNLALA 648
YTG GG ++G K DQKL N ALA
Sbjct: 64 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALA 97
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
pdb|3OLN|B Chain B, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
Length = 231
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 559 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDV 618
G +PG+ VG +++RV+++ G+H GGI + G A S+V +GG+ D +D D
Sbjct: 31 GPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDG---AYSLVLAGGFADEVDRGDE 87
Query: 619 LIYTGQGGNVMNG----GKEPEDQKLERGNLALA 648
YTG GG + G G DQ L N ALA
Sbjct: 88 FTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALA 121
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 36/153 (23%)
Query: 804 QQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGN 863
++G+K L + +G GV + G F+ EY G+L+E +A++R +
Sbjct: 28 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 73
Query: 864 NYNDGSLWGGLSNVMPDAPSSSCGVVE----DGGFTIDAV-EYGNVGRFVNHSCSPNLYA 918
+ PS+ C + + +DA E +GR +NHS S N
Sbjct: 74 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKSGN--C 118
Query: 919 QNVLYDHEDKRMPHIMLFAAENIPPLQELTYHY 951
Q L+D + +PH++L A+ +I +EL Y Y
Sbjct: 119 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 149
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 36/153 (23%)
Query: 804 QQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGN 863
++G+K L + +G GV + G F+ E+ G+L+E +A++R +
Sbjct: 29 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREA---------- 74
Query: 864 NYNDGSLWGGLSNVMPDAPSSSCGVVE----DGGFTIDAV-EYGNVGRFVNHSCSPNLYA 918
+ PS+ C + + +DA E +GR +NHS N
Sbjct: 75 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 119
Query: 919 QNVLYDHEDKRMPHIMLFAAENIPPLQELTYHY 951
Q L+D + +PH++L A+ +I +EL Y Y
Sbjct: 120 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 36/153 (23%)
Query: 804 QQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGN 863
++G+K L + +G GV + G F+ EY G+L+E +A++R +
Sbjct: 29 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 74
Query: 864 NYNDGSLWGGLSNVMPDAPSSSCGVVE----DGGFTIDAV-EYGNVGRFVNHSCSPNLYA 918
+ PS+ C + + +DA E +GR +NHS N
Sbjct: 75 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 119
Query: 919 QNVLYDHEDKRMPHIMLFAAENIPPLQELTYHY 951
Q L+D + +PH++L A+ +I +EL + Y
Sbjct: 120 QTKLHDIDG--VPHLILIASRDIAAGEELLFDY 150
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 36/153 (23%)
Query: 804 QQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGN 863
++G+K L + +G GV + G F+ EY G+L+E +A++R +
Sbjct: 24 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 69
Query: 864 NYNDGSLWGGLSNVMPDAPSSSCGVVE----DGGFTIDAV-EYGNVGRFVNHSCSPNLYA 918
+ PS+ C + + +DA E +GR +NHS N
Sbjct: 70 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 114
Query: 919 QNVLYDHEDKRMPHIMLFAAENIPPLQELTYHY 951
Q L+D + +PH++L A+ +I +EL Y Y
Sbjct: 115 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 145
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 36/153 (23%)
Query: 804 QQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGN 863
++G+K L + +G GV + G F+ EY G+L+E +A++R +
Sbjct: 30 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 75
Query: 864 NYNDGSLWGGLSNVMPDAPSSSCGVVE----DGGFTIDAV-EYGNVGRFVNHSCSPNLYA 918
+ PS+ C + + +DA E +GR +NHS N
Sbjct: 76 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 120
Query: 919 QNVLYDHEDKRMPHIMLFAAENIPPLQELTYHY 951
Q L+D + +PH++L A+ +I +EL Y Y
Sbjct: 121 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 151
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 894 FTIDAVEYGNVG-------RFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQE 946
FTI E VG +NHSC PN +++++ PH++L A +I +E
Sbjct: 219 FTICNAEMQEVGVGLYPSISLLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGEE 270
Query: 947 LTYHYNYVIDQVYDSSGNIKKKSCF-CGSSEC 977
LT Y ++ + ++ + CF C C
Sbjct: 271 LTICYLDMLMTSEERRKQLRDQYCFECDCFRC 302
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 893 GFTIDAVEYGNVG-------RFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQ 945
FTI E VG +NHSC PN +++++ PH++L A +I +
Sbjct: 184 SFTICNAEMQEVGVGLYPSISLLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGE 235
Query: 946 ELTYHYNYVIDQVYDSSGNIKKKSCF-CGSSEC 977
ELT Y ++ + ++ + CF C C
Sbjct: 236 ELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 268
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 893 GFTIDAVEYGNVG-------RFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQ 945
FTI E VG +NHSC PN +++++ PH++L A +I +
Sbjct: 183 SFTICNAEMQEVGVGLYPSISLLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGE 234
Query: 946 ELTYHYNYVIDQVYDSSGNIKKKSCF-CGSSEC 977
ELT Y ++ + ++ + CF C C
Sbjct: 235 ELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 267
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 893 GFTIDAVEYGNVG-------RFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQ 945
FTI E VG +NHSC PN +++++ PH++L A +I +
Sbjct: 182 SFTICNAEMQEVGVGLYPSISLLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGE 233
Query: 946 ELTYHYNYVIDQVYDSSGNIKKKSCF-CGSSEC 977
ELT Y ++ + ++ + CF C C
Sbjct: 234 ELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 266
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 893 GFTIDAVEYGNVG-------RFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQ 945
FTI E VG +NHSC PN +++++ PH++L A +I +
Sbjct: 182 SFTICNAEMQEVGVGLYPSISLLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGE 233
Query: 946 ELTYHYNYVIDQVYDSSGNIKKKSCF-CGSSEC 977
ELT Y ++ + ++ + CF C C
Sbjct: 234 ELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 266
>pdb|3VOO|A Chain A, Cytochrome P450sp Alpha (cyp152b1) Mutant A245e
Length = 407
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 13/135 (9%)
Query: 830 PSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVV 889
P +C +AG L + EA R LFD + + LW L+ DA +
Sbjct: 132 PLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRI--- 188
Query: 890 EDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENI-PPLQELT 948
I+ + G++G + + ++ H+D PH+ N+ P E+
Sbjct: 189 ------IEGIRAGSIGSGSGTAAYAIAWHRD---RHDDLLSPHVAAVELVNVLRPTVEIA 239
Query: 949 YHYNYVIDQVYDSSG 963
+ +V + SG
Sbjct: 240 VYITFVAHALQTCSG 254
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 893 GFTIDAVEYGNVG-------RFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQ 945
FTI E VG +NHSC PN +++++ PH++L A +I +
Sbjct: 183 SFTICNAEXQEVGVGLYPSISLLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGE 234
Query: 946 ELTYHYNYVIDQVYDSSGNIKKKSCF-CGSSEC 977
ELT Y + + ++ + CF C C
Sbjct: 235 ELTICYLDXLXTSEERRKQLRDQYCFECDCFRC 267
>pdb|2GL6|A Chain A, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|B Chain B, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|C Chain C, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|D Chain D, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|E Chain E, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|F Chain F, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|G Chain G, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|H Chain H, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
Length = 392
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 234 QIRVNGYDGDVCMNEFGGDVSKITSGKVLADFEEHATMETKNRDG 278
++R NGYD V + D SKIT G+ F+EH + ++ R G
Sbjct: 104 KLRHNGYDPRVMKHTTDLDASKITQGQ----FDEHYVLSSRVRTG 144
>pdb|3AWP|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Mutant F288g
Length = 415
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 830 PSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVV 889
P +C +AG L + EA R LFD + + LW L+ DA +
Sbjct: 140 PLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRI--- 196
Query: 890 EDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENI-PPLQELT 948
I+ + G++G + + ++ H+D PH+ N+ P +
Sbjct: 197 ------IEGIRAGSIGSGSGTAAYAIAWHRD---RHDDLLSPHVAAVELVNVLRPTVAIA 247
Query: 949 YHYNYVIDQVYDSSG 963
+ +V + SG
Sbjct: 248 VYITFVAHALQTCSG 262
>pdb|3VNO|A Chain A, Cytochrome P450sp Alpha (cyp152b1) Mutant R241e
Length = 407
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 830 PSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVV 889
P +C +AG L + EA R LFD + + LW L+ DA +
Sbjct: 132 PLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRI--- 188
Query: 890 EDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENI-PPLQELT 948
I+ + G++G + + ++ H+D PH+ N+ P +
Sbjct: 189 ------IEGIRAGSIGSGSGTAAYAIAWHRD---RHDDLLSPHVAAVELVNVLEPTVAIA 239
Query: 949 YHYNYVIDQVYDSSG 963
+ +V + SG
Sbjct: 240 VYITFVAHALQTCSG 254
>pdb|3AWM|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Wild-Type With Palmitic
Acid
Length = 415
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 830 PSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVV 889
P +C +AG L + EA R LFD + + LW L+ DA +
Sbjct: 140 PLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRI--- 196
Query: 890 EDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENI-PPLQELT 948
I+ + G++G + + ++ H+D PH+ N+ P +
Sbjct: 197 ------IEGIRAGSIGSGSGTAAYAIAWHRD---RHDDLLSPHVAAVELVNVLRPTVAIA 247
Query: 949 YHYNYVIDQVYDSSG 963
+ +V + SG
Sbjct: 248 VYITFVAHALQTCSG 262
>pdb|3AWQ|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Mutant L78f
Length = 415
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 830 PSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVV 889
P +C +AG L + EA R LFD + + LW L+ DA +
Sbjct: 140 PLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRI--- 196
Query: 890 EDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENI-PPLQELT 948
I+ + G++G + + ++ H+D PH+ N+ P +
Sbjct: 197 ------IEGIRAGSIGSGSGTAAYAIAWHRD---RHDDLLSPHVAAVELVNVLRPTVAIA 247
Query: 949 YHYNYVIDQVYDSSG 963
+ +V + SG
Sbjct: 248 VYITFVAHALQTCSG 262
>pdb|3VM4|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) In Complex With
(R)-Ibuprophen
Length = 407
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 830 PSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVV 889
P +C +AG L + EA R LFD + + LW L+ DA +
Sbjct: 132 PLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRI--- 188
Query: 890 EDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENI-PPLQELT 948
I+ + G++G + + ++ H+D PH+ N+ P +
Sbjct: 189 ------IEGIRAGSIGSGSGTAAYAIAWHRD---RHDDLLSPHVAAVELVNVLRPTVAIA 239
Query: 949 YHYNYVIDQVYDSSG 963
+ +V + SG
Sbjct: 240 VYITFVAHALQTCSG 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,145,347
Number of Sequences: 62578
Number of extensions: 1379261
Number of successful extensions: 2269
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2191
Number of HSP's gapped (non-prelim): 56
length of query: 982
length of database: 14,973,337
effective HSP length: 108
effective length of query: 874
effective length of database: 8,214,913
effective search space: 7179833962
effective search space used: 7179833962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)