Query 048157
Match_columns 982
No_of_seqs 445 out of 1725
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1082 Histone H3 (Lys9) meth 100.0 1.2E-51 2.5E-56 460.0 19.4 288 694-982 54-354 (364)
2 smart00466 SRA SET and RING fi 100.0 1.2E-42 2.7E-47 346.2 11.8 125 555-680 2-155 (155)
3 PF02182 SAD_SRA: SAD/SRA doma 100.0 6.2E-41 1.3E-45 334.8 9.7 126 555-680 1-155 (155)
4 KOG4442 Clathrin coat binding 100.0 1.1E-40 2.4E-45 383.4 11.5 209 727-981 43-259 (729)
5 KOG1141 Predicted histone meth 100.0 2.5E-38 5.5E-43 363.9 9.4 153 696-849 669-839 (1262)
6 KOG1080 Histone H3 (Lys4) meth 99.9 3.8E-28 8.3E-33 294.8 9.8 132 809-981 866-1004(1005)
7 KOG1079 Transcriptional repres 99.9 1.4E-26 2.9E-31 266.3 10.5 140 785-957 559-714 (739)
8 smart00317 SET SET (Su(var)3-9 99.9 1.7E-21 3.7E-26 178.5 13.3 109 810-951 1-116 (116)
9 KOG1083 Putative transcription 99.8 6.8E-22 1.5E-26 234.6 2.4 132 797-955 1165-1297(1306)
10 PF05033 Pre-SET: Pre-SET moti 99.8 5.2E-19 1.1E-23 164.5 7.3 98 704-801 1-103 (103)
11 smart00468 PreSET N-terminal t 99.7 4.9E-18 1.1E-22 157.5 8.0 91 703-793 2-98 (98)
12 COG2940 Proteins containing SE 99.6 1.2E-16 2.7E-21 185.0 5.4 168 788-981 311-479 (480)
13 KOG1085 Predicted methyltransf 99.6 1.2E-15 2.7E-20 162.8 7.9 120 805-954 252-379 (392)
14 PF00856 SET: SET domain; Int 99.3 5.9E-12 1.3E-16 119.8 8.1 56 893-952 107-162 (162)
15 KOG1141 Predicted histone meth 98.8 4.5E-09 9.8E-14 124.4 6.6 280 698-982 873-1262(1262)
16 KOG1081 Transcription factor N 98.7 5.2E-09 1.1E-13 121.6 1.9 150 782-981 286-436 (463)
17 KOG2589 Histone tail methylase 98.1 1.5E-06 3.3E-11 96.8 4.2 103 818-957 136-242 (453)
18 KOG2461 Transcription factor B 97.6 5.3E-05 1.1E-09 87.2 4.6 116 807-957 26-148 (396)
19 smart00508 PostSET Cysteine-ri 95.5 0.0065 1.4E-07 44.8 1.2 15 967-981 2-16 (26)
20 smart00570 AWS associated with 93.9 0.027 5.9E-07 47.8 1.3 26 781-806 24-49 (51)
21 KOG2084 Predicted histone tail 85.2 0.72 1.6E-05 53.0 3.5 43 907-957 208-251 (482)
22 COG3440 Predicted restriction 74.6 0.57 1.2E-05 52.5 -1.8 88 563-654 10-98 (301)
23 KOG1337 N-methyltransferase [G 59.8 7.3 0.00016 46.4 3.2 40 907-953 239-278 (472)
24 KOG3813 Uncharacterized conser 46.1 11 0.00023 45.5 1.6 42 746-802 308-350 (640)
25 KOG1081 Transcription factor N 24.8 20 0.00043 43.1 -0.8 131 785-946 95-230 (463)
26 PF08666 SAF: SAF domain; Int 23.6 43 0.00093 28.3 1.3 16 934-949 3-18 (63)
No 1
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-51 Score=460.05 Aligned_cols=288 Identities=39% Similarity=0.662 Sum_probs=239.0
Q ss_pred cccccCceecccCCCCCccCeEEEeccCCCCCCCCEEecccccCC-CCC-CCCCCCCCCCCCCcCCC--CccccccCCCC
Q 048157 694 SKVREGLCVDDISQGKELIPICAVNTVDDEKPPSFKYITNIIYPD-WCR-PVPPKGCDCTNGCSELG--KCACVAKNGGE 769 (982)
Q Consensus 694 ~k~R~gli~~DIS~GkE~iPI~vvN~VDde~pP~F~YI~~~iyp~-~~~-~~p~~GCdC~~~C~d~~--~C~C~~kngg~ 769 (982)
.+.+.+....||+.|.|.+||+++|+||++.++.|+|++..++.. ... ..+..+|.|.+.|.... .|.|...|++.
T Consensus 54 ~~~~~~~~~~d~~~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~ 133 (364)
T KOG1082|consen 54 DKLEAKSELEDIALGSENLPVPLVNRIDEDAPLYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLTCLCERHNGGL 133 (364)
T ss_pred cccccccccccccCccccCceeeeeeccCCccccceeccccccCccccccCccccCCCccCCCCCCCCccccChHhhCCc
Confidence 445567789999999999999999999988888899999987765 322 24568899998887642 39999999999
Q ss_pred cccCCCC---ceeccCCeeeccCCCCCCCCCCCCccccccceeeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHH
Q 048157 770 LPYNHNG---AIVQAKPLVYECGPSCKCPPSCYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEK 846 (982)
Q Consensus 770 ~pYn~nG---~Lv~~rplIyECgp~C~C~~sC~NRvvQrG~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~e 846 (982)
++|+.+| .+...+..+|||++.|+|++.|.||++|+|++.+|+||+|+.+||||||++.|++|+|||||+||+++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~ 213 (364)
T KOG1082|consen 134 VAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSE 213 (364)
T ss_pred cccccCCccccccccCccccccccCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChH
Confidence 9999888 6778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeccCCCCCCCCccCCc--cccCCCCCCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEc
Q 048157 847 EAERRTSNDEYLFDIGNNYNDGSLWGGL--SNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYD 924 (982)
Q Consensus 847 Eae~R~~~d~YlFdl~~~~~~~~~w~~l--s~~~pd~~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd 924 (982)
+++++..+..|.++....+.. ..|... ...+...+..+........++|||..+||++|||||||.||+.++.|+.+
T Consensus 214 e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~ 292 (364)
T KOG1082|consen 214 EAQRRTHLREYLDDDCDAYSI-ADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQD 292 (364)
T ss_pred Hhhhccccccccccccccchh-hhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeec
Confidence 999998788888875543321 222222 22222222333334456789999999999999999999999999999999
Q ss_pred CCCCcccEEEEEEccCCCCCCeEEEecCCCccc-ccccC---CCCcCeeeecCCCCCccccC
Q 048157 925 HEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQ-VYDSS---GNIKKKSCFCGSSECTGRLY 982 (982)
Q Consensus 925 ~~d~~~PrIafFA~RDI~pGEELTfDYG~~~~~-v~ds~---G~ikk~~ClCGS~nCRG~Ly 982 (982)
+.+..++||+|||+++|+||||||||||..+.. +.+.. ....+..|.||+.+||++++
T Consensus 293 ~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~ 354 (364)
T KOG1082|consen 293 EFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLG 354 (364)
T ss_pred CCccchheeeeeeccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccC
Confidence 999999999999999999999999999987641 11111 12356899999999999885
No 2
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=1.2e-42 Score=346.22 Aligned_cols=125 Identities=60% Similarity=0.970 Sum_probs=119.1
Q ss_pred CceeccCCCcccCceechhhhhhhhcccCCccCCceecc-cCCceeEEEEEecCCCCCCCCCCCeEEEEcCCcccCCCCC
Q 048157 555 KKVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVK-HKGKILATSIVASGGYDDNLDNSDVLIYTGQGGNVMNGGK 633 (982)
Q Consensus 555 ~~~~G~IPGV~VGd~F~~R~El~~vGlH~~~~aGId~~~-~~G~~~A~SIV~SGgYeDD~D~gD~liYTG~GG~~~~~~k 633 (982)
+++||+||||+|||+|+||+||+++|||+++|+||||++ .+|.++|+|||+||||+||+|+||+|||||+||++. .++
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~-~~~ 80 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM-THG 80 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCCEEEEEccCCccC-CCC
Confidence 468999999999999999999999999999999999998 457889999999999999999999999999999987 567
Q ss_pred CCCcccccchhHHHHhhHHhcC----------------------------CCcccccCCCCceEEEEEeeecCCC
Q 048157 634 EPEDQKLERGNLALANSIHEQN----------------------------PRYWQDVGSHGKLVFKFKLARIPGQ 680 (982)
Q Consensus 634 q~~DQklerGNlAL~~S~~~~~----------------------------~~~W~e~G~~G~~V~KFkL~RlpGQ 680 (982)
|..||+|++||+||++|+++++ ++||.++|++||.||||+|+|+|||
T Consensus 81 ~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 81 QPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence 9999999999999999999988 7899999999999999999999998
No 3
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=6.2e-41 Score=334.76 Aligned_cols=126 Identities=61% Similarity=1.010 Sum_probs=103.4
Q ss_pred CceeccCCCcccCceechhhhhhhhcccCCccCCceecccCCceeEEEEEecCCCCCCCCCCCeEEEEcCCcccCCCCCC
Q 048157 555 KKVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDVLIYTGQGGNVMNGGKE 634 (982)
Q Consensus 555 ~~~~G~IPGV~VGd~F~~R~El~~vGlH~~~~aGId~~~~~G~~~A~SIV~SGgYeDD~D~gD~liYTG~GG~~~~~~kq 634 (982)
+++|||||||+|||||++|+||+++|||+++|+||||++..|.++|+|||+||+|+||+|+||+|||||+||++..+.+|
T Consensus 1 ~k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg~~~~~~~~ 80 (155)
T PF02182_consen 1 EKRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKEGGPVAYSIVLSGGYEDDEDNGDVLIYTGQGGNDLSGNKQ 80 (155)
T ss_dssp -TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEETTTESEEEEEEEESSSSTTCEECSSEEEEE-SSSB--TTT-B
T ss_pred CCcEeCCCCccCccEEhHHHHHhHhccCCCccCCeecccCCCceeeEEEEECCCcccccCCCCEEEEEcCCCcccccccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CCcccccchhHHHHhhHHhcC-----------------------------CCcccccCCCCceEEEEEeeecCCC
Q 048157 635 PEDQKLERGNLALANSIHEQN-----------------------------PRYWQDVGSHGKLVFKFKLARIPGQ 680 (982)
Q Consensus 635 ~~DQklerGNlAL~~S~~~~~-----------------------------~~~W~e~G~~G~~V~KFkL~RlpGQ 680 (982)
..||+|++||+||++|+++++ ++||.+++++|+.||||+|+|+|||
T Consensus 81 ~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R~~gQ 155 (155)
T PF02182_consen 81 PKDQKLERGNLALANSMKTGNPVRVIRGYKLKSSYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVRLPGQ 155 (155)
T ss_dssp -S---SSHHHHHHHHHSGGS-EEEEEEEGGGGGTTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-TSS
T ss_pred cccccccchhHHHHHHHhcCCCeEEEeecCCCCccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEECCCC
Confidence 999999999999999999988 6899999999999999999999998
No 4
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-40 Score=383.44 Aligned_cols=209 Identities=33% Similarity=0.601 Sum_probs=162.0
Q ss_pred CCEEecccccCCCCCC----CCCCCCCCCCCCcC--CCCccccccCCCCcccCCCCceeccCCeeeccCC-CCC-CCCCC
Q 048157 727 SFKYITNIIYPDWCRP----VPPKGCDCTNGCSE--LGKCACVAKNGGELPYNHNGAIVQAKPLVYECGP-SCK-CPPSC 798 (982)
Q Consensus 727 ~F~YI~~~iyp~~~~~----~p~~GCdC~~~C~d--~~~C~C~~kngg~~pYn~nG~Lv~~rplIyECgp-~C~-C~~sC 798 (982)
.|.-+...+|...... .+..-|+|...-.+ ...|.|.. -|.++....||++ .|. |+..|
T Consensus 43 ~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~-------------~CiNr~t~iECs~~~C~~cg~~C 109 (729)
T KOG4442|consen 43 KFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGE-------------DCINRMTSIECSDRECPRCGVYC 109 (729)
T ss_pred hhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCc-------------cccchhhhcccCCccCCCccccc
Confidence 4555555566541111 13457888753332 24555543 2335566789999 798 99999
Q ss_pred CCccccccceeeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcCCCceeeccCCCCCCCCccCCccccC
Q 048157 799 YNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVM 878 (982)
Q Consensus 799 ~NRvvQrG~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~~d~YlFdl~~~~~~~~~w~~ls~~~ 878 (982)
.|+.+|+....+++||.|.++||||||..+|++|+||.||.||||+..|++.|.. .|.-+-..
T Consensus 110 ~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~--~Y~~d~~k--------------- 172 (729)
T KOG4442|consen 110 KNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVK--RYAKDGIK--------------- 172 (729)
T ss_pred cchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHH--HHHhcCCc---------------
Confidence 9999999999999999999999999999999999999999999999999998863 12111000
Q ss_pred CCCCCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCcccc
Q 048157 879 PDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQV 958 (982)
Q Consensus 879 pd~~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~~~~~v 958 (982)
....+.....++|||+.+||.||||||||+|||+++.|.+.+ ..||+|||.|.|+|||||||||++..
T Consensus 173 -----h~Yfm~L~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~----~lRvGiFakk~I~~GEEITFDYqf~r--- 240 (729)
T KOG4442|consen 173 -----HYYFMALQGGEYIDATKKGNLARFINHSCDPNAEVQKWTVPD----ELRVGIFAKKVIKPGEEITFDYQFDR--- 240 (729)
T ss_pred -----eEEEEEecCCceecccccCcHHHhhcCCCCCCceeeeeeeCC----eeEEEEeEecccCCCceeeEeccccc---
Confidence 001123356789999999999999999999999999999965 57899999999999999999999854
Q ss_pred cccCCCCcCeeeecCCCCCcccc
Q 048157 959 YDSSGNIKKKSCFCGSSECTGRL 981 (982)
Q Consensus 959 ~ds~G~ikk~~ClCGS~nCRG~L 981 (982)
+|. ...+|+||+++|||||
T Consensus 241 ---YGr-~AQ~CyCgeanC~G~I 259 (729)
T KOG4442|consen 241 ---YGR-DAQPCYCGEANCRGWI 259 (729)
T ss_pred ---ccc-cccccccCCccccccc
Confidence 232 3579999999999997
No 5
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-38 Score=363.94 Aligned_cols=153 Identities=33% Similarity=0.664 Sum_probs=123.3
Q ss_pred cccCceecccCCCCCccCeEEEeccCCCCCCCCEEecccccCCCC----CCCCCCCCCCCCCCcCCCCccccccCC----
Q 048157 696 VREGLCVDDISQGKELIPICAVNTVDDEKPPSFKYITNIIYPDWC----RPVPPKGCDCTNGCSELGKCACVAKNG---- 767 (982)
Q Consensus 696 ~R~gli~~DIS~GkE~iPI~vvN~VDde~pP~F~YI~~~iyp~~~----~~~p~~GCdC~~~C~d~~~C~C~~kng---- 767 (982)
..+++-+.||+.|+|.+||..+|+||..++|.|.|-...+-.... .+....+|+|..+|.+...|+|.+..-
T Consensus 669 ~kp~~~~~Di~~g~e~vpis~~neids~~lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~ 748 (1262)
T KOG1141|consen 669 LKPGNRCTDIPCGREHVPISEKNEIDSHRLPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKT 748 (1262)
T ss_pred cCCcceeccccCCccccccceeecccCcCCccchhheeeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhc
Confidence 347888899999999999999999999999999998876543321 233468999999999999999987421
Q ss_pred ----CCcc----cCCCCceec-cCCeeeccCCCCCCCC-CCCCccccccceeeEEEEEcCCCceeEeeccccCCCCeEEE
Q 048157 768 ----GELP----YNHNGAIVQ-AKPLVYECGPSCKCPP-SCYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICE 837 (982)
Q Consensus 768 ----g~~p----Yn~nG~Lv~-~rplIyECgp~C~C~~-sC~NRvvQrG~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcE 837 (982)
+... |... ++.+ ...-+|||...|+|.+ .|.||++|+|.+.+|++|+|..+|||+|++++|..|+|||-
T Consensus 749 t~p~~~v~~t~gykyK-Rl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVci 827 (1262)
T KOG1141|consen 749 TGPNQNVASTNGYKYK-RLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCI 827 (1262)
T ss_pred cCCCcccccCcchhhH-HHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEE
Confidence 1111 2111 2222 3345899999999865 79999999999999999999999999999999999999999
Q ss_pred eceEeccHHHHH
Q 048157 838 YAGELLEEKEAE 849 (982)
Q Consensus 838 YvGEVIt~eEae 849 (982)
|.|.++++.-++
T Consensus 828 y~g~~l~~~~sd 839 (1262)
T KOG1141|consen 828 YPGGALLHQISD 839 (1262)
T ss_pred ecchhhhhhhch
Confidence 999998765443
No 6
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=3.8e-28 Score=294.85 Aligned_cols=132 Identities=34% Similarity=0.747 Sum_probs=115.0
Q ss_pred eeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhc-------CCCceeeccCCCCCCCCccCCccccCCCC
Q 048157 809 FQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRT-------SNDEYLFDIGNNYNDGSLWGGLSNVMPDA 881 (982)
Q Consensus 809 ~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~-------~~d~YlFdl~~~~~~~~~w~~ls~~~pd~ 881 (982)
.+|.-.++..+||||||++.|.+|++|+||+||+|...-++.|. ..+.|+|.++
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid------------------- 926 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRID------------------- 926 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecc-------------------
Confidence 34666688899999999999999999999999999876665553 2578888874
Q ss_pred CCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCccccccc
Q 048157 882 PSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDS 961 (982)
Q Consensus 882 ~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~~~~~v~ds 961 (982)
...+|||+++||+||||||||.|||++..+.+++. .+|+|||.|||.+||||||||.+..+.
T Consensus 927 ----------~~~ViDAtk~gniAr~InHsC~PNCyakvi~V~g~----~~IvIyakr~I~~~EElTYDYkF~~e~---- 988 (1005)
T KOG1080|consen 927 ----------DEVVVDATKKGNIARFINHSCNPNCYAKVITVEGD----KRIVIYSKRDIAAGEELTYDYKFPTED---- 988 (1005)
T ss_pred ----------cceEEeccccCchhheeecccCCCceeeEEEecCe----eEEEEEEecccccCceeeeeccccccc----
Confidence 35899999999999999999999999999988765 489999999999999999999987653
Q ss_pred CCCCcCeeeecCCCCCcccc
Q 048157 962 SGNIKKKSCFCGSSECTGRL 981 (982)
Q Consensus 962 ~G~ikk~~ClCGS~nCRG~L 981 (982)
.+.+|+|||++|||+|
T Consensus 989 ----~kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 989 ----DKIPCLCGAPNCRGFL 1004 (1005)
T ss_pred ----cccccccCCCcccccc
Confidence 2579999999999997
No 7
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.93 E-value=1.4e-26 Score=266.29 Aligned_cols=140 Identities=34% Similarity=0.613 Sum_probs=123.2
Q ss_pred eeccCCC-CCCC----------CCCCCccccccceeeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcC
Q 048157 785 VYECGPS-CKCP----------PSCYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTS 853 (982)
Q Consensus 785 IyECgp~-C~C~----------~sC~NRvvQrG~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~ 853 (982)
..||.|. |.|. -+|.|--+|+|.+.++-+..+...|||+|+.+.+.+++||.||+||+|+++|+++|..
T Consensus 559 ~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGk 638 (739)
T KOG1079|consen 559 VRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGK 638 (739)
T ss_pred ccccCchHHhccCcccccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhccc
Confidence 5799974 7552 2899999999999999999999999999999999999999999999999999999974
Q ss_pred -----CCceeeccCCCCCCCCccCCccccCCCCCCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCC
Q 048157 854 -----NDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDK 928 (982)
Q Consensus 854 -----~d~YlFdl~~~~~~~~~w~~ls~~~pd~~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~ 928 (982)
.-.|+|++. ..|+|||+++||.+||+|||-.|||++..+++.+.
T Consensus 639 iYDr~~cSflFnln-----------------------------~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~Gd-- 687 (739)
T KOG1079|consen 639 IYDRYMCSFLFNLN-----------------------------NDYVIDSTRKGNKIRFANHSFNPNCYAKVMMVAGD-- 687 (739)
T ss_pred ccccccceeeeecc-----------------------------ccceEeeeeecchhhhccCCCCCCcEEEEEEecCC--
Confidence 345555542 35899999999999999999999999998888653
Q ss_pred cccEEEEEEccCCCCCCeEEEecCCCccc
Q 048157 929 RMPHIMLFAAENIPPLQELTYHYNYVIDQ 957 (982)
Q Consensus 929 ~~PrIafFA~RDI~pGEELTfDYG~~~~~ 957 (982)
.||+|||.|.|.+||||||||.|...+
T Consensus 688 --hRIGifAkRaIeagEELffDYrYs~~~ 714 (739)
T KOG1079|consen 688 --HRIGIFAKRAIEAGEELFFDYRYSPEH 714 (739)
T ss_pred --cceeeeehhhcccCceeeeeeccCccc
Confidence 579999999999999999999997653
No 8
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.86 E-value=1.7e-21 Score=178.50 Aligned_cols=109 Identities=46% Similarity=0.841 Sum_probs=90.4
Q ss_pred eEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcC-----C--CceeeccCCCCCCCCccCCccccCCCCC
Q 048157 810 QLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTS-----N--DEYLFDIGNNYNDGSLWGGLSNVMPDAP 882 (982)
Q Consensus 810 ~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~-----~--d~YlFdl~~~~~~~~~w~~ls~~~pd~~ 882 (982)
++++++++.+|+||+|+++|++|++|++|.|.++...+...+.. . ..|+|..
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 59 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEI--------------------- 59 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEEC---------------------
Confidence 36788999999999999999999999999999998877665421 1 1333322
Q ss_pred CCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEec
Q 048157 883 SSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHY 951 (982)
Q Consensus 883 ~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDY 951 (982)
...++||+...||++|||||||.||+.+..+..++. .++.|+|+|||++|||||+||
T Consensus 60 --------~~~~~id~~~~~~~~~~iNHsc~pN~~~~~~~~~~~----~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 60 --------DSDLCIDARRKGNIARFINHSCEPNCELLFVEVNGD----SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred --------CCCEEEeCCccCcHHHeeCCCCCCCEEEEEEEECCC----cEEEEEECCCcCCCCEEeecC
Confidence 125899999999999999999999999988876443 379999999999999999999
No 9
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.83 E-value=6.8e-22 Score=234.58 Aligned_cols=132 Identities=40% Similarity=0.652 Sum_probs=107.4
Q ss_pred CCCCccccc-cceeeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcCCCceeeccCCCCCCCCccCCcc
Q 048157 797 SCYNRVSQQ-GIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLS 875 (982)
Q Consensus 797 sC~NRvvQr-G~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~~d~YlFdl~~~~~~~~~w~~ls 875 (982)
+|.|+.+|+ +.-.+|+||+.+.+||||++..+|++|+|||||+|||++..+.+.+.. .+-.+..
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mm------tl~~~d~--------- 1229 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMM------TLYHNDD--------- 1229 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhccccc------ccCCCCC---------
Confidence 477777665 566789999999999999999999999999999999999988776621 1100100
Q ss_pred ccCCCCCCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCc
Q 048157 876 NVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVI 955 (982)
Q Consensus 876 ~~~pd~~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~~~ 955 (982)
.+.| ...+.+.+||+.++||.+|||||||.|||..|.|-+++ ++||++||+|||++||||||||++..
T Consensus 1230 -------~~~c-L~I~p~l~id~~R~~n~~RfinhscKPNc~~qkwSVNG----~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1230 -------DHYC-LVIDPGLFIDIPRMGNGARFINHSCKPNCEMQKWSVNG----EYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred -------cccc-cccCccccCChhhccccccccccccCCCCccccccccc----eeeeeeeecCCCCCCceEEEeccccc
Confidence 0111 23356789999999999999999999999999998864 48999999999999999999998654
No 10
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.77 E-value=5.2e-19 Score=164.46 Aligned_cols=98 Identities=48% Similarity=1.010 Sum_probs=71.1
Q ss_pred ccCCCCCccCeEEEeccCCCCC-CCCEEecccccCCCCC---CCCCCCCCCCCCCcCCCCccccccCCCCcccCCCCcee
Q 048157 704 DISQGKELIPICAVNTVDDEKP-PSFKYITNIIYPDWCR---PVPPKGCDCTNGCSELGKCACVAKNGGELPYNHNGAIV 779 (982)
Q Consensus 704 DIS~GkE~iPI~vvN~VDde~p-P~F~YI~~~iyp~~~~---~~p~~GCdC~~~C~d~~~C~C~~kngg~~pYn~nG~Lv 779 (982)
|||.|+|.+||+++|+||++.| |.|+||.++++..... .....+|+|.++|....+|+|...+++.++|+.+|+|.
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~ 80 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLR 80 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBS
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccccccccCccCccCCCCCCCCCCcCccccCccccccCCCcCc
Confidence 8999999999999999999987 5799999998876322 22357999999998788999999998889999999997
Q ss_pred -ccCCeeeccCCCCCCCCCCCCc
Q 048157 780 -QAKPLVYECGPSCKCPPSCYNR 801 (982)
Q Consensus 780 -~~rplIyECgp~C~C~~sC~NR 801 (982)
....+||||++.|.|+.+|+||
T Consensus 81 ~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 81 IPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp SSSTSEEE---TTSSS-TTSTT-
T ss_pred cCCCCeEEeCCCCCCCCCCCCCC
Confidence 6788999999999999999998
No 11
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.73 E-value=4.9e-18 Score=157.47 Aligned_cols=91 Identities=46% Similarity=0.963 Sum_probs=80.5
Q ss_pred cccCCCCCccCeEEEeccCCCCCC-CCEEecccccCCCC----CCCCCCCCCCCCCCcCCCCccccccCCCCccc-CCCC
Q 048157 703 DDISQGKELIPICAVNTVDDEKPP-SFKYITNIIYPDWC----RPVPPKGCDCTNGCSELGKCACVAKNGGELPY-NHNG 776 (982)
Q Consensus 703 ~DIS~GkE~iPI~vvN~VDde~pP-~F~YI~~~iyp~~~----~~~p~~GCdC~~~C~d~~~C~C~~kngg~~pY-n~nG 776 (982)
.|||+|+|.+||+++|+||++.|| .|+||++++++... ...+..||+|.++|.+...|.|.+++++.++| ...+
T Consensus 2 ~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~~~C~C~~~~~~~~~Y~~~~~ 81 (98)
T smart00468 2 LDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSSNKCECARKNGGEFAYELNGG 81 (98)
T ss_pred ccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCCCcCCcHhhcCCccCcccCCC
Confidence 699999999999999999998874 79999999887643 34567899999999987679999999999999 7777
Q ss_pred ceeccCCeeeccCCCCC
Q 048157 777 AIVQAKPLVYECGPSCK 793 (982)
Q Consensus 777 ~Lv~~rplIyECgp~C~ 793 (982)
+++..+++||||++.|+
T Consensus 82 ~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 82 LRLKRKPLIYECNSRCS 98 (98)
T ss_pred EEeCCCCEEEcCCCCCC
Confidence 78889999999999985
No 12
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.63 E-value=1.2e-16 Score=184.99 Aligned_cols=168 Identities=30% Similarity=0.500 Sum_probs=124.5
Q ss_pred cCCCCCCCCCCCCccccccceeeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcCCCceeeccCCCCCC
Q 048157 788 CGPSCKCPPSCYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYND 867 (982)
Q Consensus 788 Cgp~C~C~~sC~NRvvQrG~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~~d~YlFdl~~~~~~ 867 (982)
+...+.+...|.|...+........+..+...||||||++.|++|++|.+|.|+++...++..+... | ..+...+
T Consensus 311 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-- 385 (480)
T COG2940 311 SKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREEN--Y-DLLGNEF-- 385 (480)
T ss_pred ccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhcc--c-ccccccc--
Confidence 3334444455666666666677778888899999999999999999999999999998887766532 2 2221111
Q ss_pred CCccCCccccCCCCCCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeE
Q 048157 868 GSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQEL 947 (982)
Q Consensus 868 ~~~w~~ls~~~pd~~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEEL 947 (982)
.+| ...+...++|+...|+++|||||||.||+.+......+ ..++.++|++||.+||||
T Consensus 386 -~~~----------------~~~~~~~~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~g----~~~~~~~~~rDI~~geEl 444 (480)
T COG2940 386 -SFG----------------LLEDKDKVRDSQKAGDVARFINHSCTPNCEASPIEVNG----IFKISIYAIRDIKAGEEL 444 (480)
T ss_pred -chh----------------hccccchhhhhhhcccccceeecCCCCCcceecccccc----cceeeecccccchhhhhh
Confidence 011 11122678999999999999999999999988765542 568999999999999999
Q ss_pred EEecCCCcccccc-cCCCCcCeeeecCCCCCcccc
Q 048157 948 TYHYNYVIDQVYD-SSGNIKKKSCFCGSSECTGRL 981 (982)
Q Consensus 948 TfDYG~~~~~v~d-s~G~ikk~~ClCGS~nCRG~L 981 (982)
|+||+...+.... ..-......|.||+..|+++|
T Consensus 445 ~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
T COG2940 445 TYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTM 479 (480)
T ss_pred ccccccccccchhhhhhhhhhhccccCCCccCCCC
Confidence 9999988764321 011123578999999999987
No 13
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.60 E-value=1.2e-15 Score=162.83 Aligned_cols=120 Identities=33% Similarity=0.522 Sum_probs=95.3
Q ss_pred ccceeeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcC---C----CceeeccCCCCCCCCccCCcccc
Q 048157 805 QGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTS---N----DEYLFDIGNNYNDGSLWGGLSNV 877 (982)
Q Consensus 805 rG~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~---~----d~YlFdl~~~~~~~~~w~~ls~~ 877 (982)
.|..-.|.+..-.++|.||+|...+.+|+||.||.|.+|.-.|+..|.. + ..|+|.+.+
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h-------------- 317 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEH-------------- 317 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeec--------------
Confidence 3444556666666799999999999999999999999998877766642 1 123332211
Q ss_pred CCCCCCCCCccccCCcEEEeccccCC-cccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCC
Q 048157 878 MPDAPSSSCGVVEDGGFTIDAVEYGN-VGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYV 954 (982)
Q Consensus 878 ~pd~~~~s~~~~~d~~~vIDA~~~GN-vARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~~ 954 (982)
....|||||+.--| .+|.||||-.+||....|.+++ .||+.+.|.|||.+||||+||||.-
T Consensus 318 ------------~sk~yCiDAT~et~~lGRLINHS~~gNl~TKvv~Idg----~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 318 ------------NSKKYCIDATKETPWLGRLINHSVRGNLKTKVVEIDG----SPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred ------------cCeeeeeecccccccchhhhcccccCcceeeEEEecC----CceEEEEeccccccchhhhhhcccc
Confidence 13469999987554 7999999999999999998875 4899999999999999999999974
No 14
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.29 E-value=5.9e-12 Score=119.77 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=44.9
Q ss_pred cEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecC
Q 048157 893 GFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYN 952 (982)
Q Consensus 893 ~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG 952 (982)
....++.....++.|+||||.|||.+...... .-.++.|.|.|||++|||||++||
T Consensus 107 ~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~----~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 107 EDDRDGIALYPFADMLNHSCDPNCEVSFDFDG----DGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp TEEEEEEEEETGGGGSEEESSTSEEEEEEEET----TTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccccccCcHhHheccccccccceeeEeec----ccceEEEEECCccCCCCEEEEEEC
Confidence 34566777888999999999999998876542 235799999999999999999997
No 15
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.81 E-value=4.5e-09 Score=124.38 Aligned_cols=280 Identities=36% Similarity=0.614 Sum_probs=201.8
Q ss_pred cCceecccCCCCCccCeEEEeccCCCCCCCCEEecccccCC------CCCCCCCCCCCCCCCCcCCCCccccccCC---C
Q 048157 698 EGLCVDDISQGKELIPICAVNTVDDEKPPSFKYITNIIYPD------WCRPVPPKGCDCTNGCSELGKCACVAKNG---G 768 (982)
Q Consensus 698 ~gli~~DIS~GkE~iPI~vvN~VDde~pP~F~YI~~~iyp~------~~~~~p~~GCdC~~~C~d~~~C~C~~kng---g 768 (982)
.|+-..|.+.|-+.+|||++|.+|...||.-+|......+. ........+|.|.+.|.+...|.|.+..- +
T Consensus 873 ~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~d~~~~~~~~~~~~~s~~~~~~~~~~s~d~hp~d~~~~~~~~~~~~~~~ 952 (1262)
T KOG1141|consen 873 KGLDVADFSLGTSGIPIPLVNSVDNDEPPSCEDSKRRFQYNDQVDISSVSRDFCSGCSCDGHPSDASKCECQQLSIEAMK 952 (1262)
T ss_pred cccchhhhhccccCCCCccccccccCCCccccccceeecccccchhhhhccccccccccCCCCcccCcccCCCCChhhhc
Confidence 47778899999999999999999999998655544322111 12333468999999999999999987431 1
Q ss_pred Ccc--cCCCCc--ee--------ccCCeeeccCCCCCCCCCCCCccccccceee--------EEEEEcCCCceeEeeccc
Q 048157 769 ELP--YNHNGA--IV--------QAKPLVYECGPSCKCPPSCYNRVSQQGIKFQ--------LEIFKTEARGWGVRSLNS 828 (982)
Q Consensus 769 ~~p--Yn~nG~--Lv--------~~rplIyECgp~C~C~~sC~NRvvQrG~k~~--------LEVFrT~~KGWGVRA~e~ 828 (982)
..| +..+|. +. ..+...+||+..|.|...|.||++|.+.+++ |.||++...|||+++..+
T Consensus 953 ~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD 1032 (1262)
T KOG1141|consen 953 RCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTD 1032 (1262)
T ss_pred CCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcCCccceeeeeccccccccccccccccccccc
Confidence 121 222221 11 1234578999999999999999999998776 557788889999999999
Q ss_pred cCCCCeEEEeceEeccHHHHHHh--cCCCceeeccCCC----------------------CCCCCcc-------------
Q 048157 829 IPSGSFICEYAGELLEEKEAERR--TSNDEYLFDIGNN----------------------YNDGSLW------------- 871 (982)
Q Consensus 829 IpaGtFIcEYvGEVIt~eEae~R--~~~d~YlFdl~~~----------------------~~~~~~w------------- 871 (982)
|+.-+|||+|+|...+..-+.+. ...+.|.-+++-. |.+..-.
T Consensus 1033 ~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve 1112 (1262)
T KOG1141|consen 1033 IPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVE 1112 (1262)
T ss_pred CCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHHHhh
Confidence 99999999999999876654432 1123332222110 0000000
Q ss_pred -------CCccccCC------------------CCCCC--C-----------------CccccCCcEEEeccccCCcccc
Q 048157 872 -------GGLSNVMP------------------DAPSS--S-----------------CGVVEDGGFTIDAVEYGNVGRF 907 (982)
Q Consensus 872 -------~~ls~~~p------------------d~~~~--s-----------------~~~~~d~~~vIDA~~~GNvARF 907 (982)
......|. ++..+ + ........|+|||+..||++||
T Consensus 1113 ~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRf 1192 (1262)
T KOG1141|consen 1113 RQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRF 1192 (1262)
T ss_pred cccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccchhhh
Confidence 00000000 00000 0 0011124689999999999999
Q ss_pred cccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCcccccccCCCCcCeeeecCCCCCccccC
Q 048157 908 VNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSECTGRLY 982 (982)
Q Consensus 908 INHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~~~~~v~ds~G~ikk~~ClCGS~nCRG~Ly 982 (982)
+||||+||+.+|+|+++.+|.++|.+||||.+-|++|+||||||+|+..++.. +...|+||+.+|||+|+
T Consensus 1193 LNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~-----keL~C~CGa~~CrgrLL 1262 (1262)
T KOG1141|consen 1193 LNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVAT-----KELTCHCGAENCRGRLL 1262 (1262)
T ss_pred hccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccccccccc-----ceEEEecChhhhhcccC
Confidence 99999999999999999999999999999999999999999999999887653 56899999999999985
No 16
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.69 E-value=5.2e-09 Score=121.60 Aligned_cols=150 Identities=29% Similarity=0.447 Sum_probs=103.5
Q ss_pred CCeeeccC-CCCCCCCCCCCccccccceeeEEEEEcCCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcCCCceeec
Q 048157 782 KPLVYECG-PSCKCPPSCYNRVSQQGIKFQLEIFKTEARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFD 860 (982)
Q Consensus 782 rplIyECg-p~C~C~~sC~NRvvQrG~k~~LEVFrT~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~~d~YlFd 860 (982)
+...++|. ..|.+...|.|+..-...... . .+ +|..+|.+| +|++++..+...+.. .
T Consensus 286 ~~~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~------~ 343 (463)
T KOG1081|consen 286 KMLAYEVHPKVCSAEERCHNQQFSKESYPE------P-QK---TAKADIRKG------VGEVIDDKECKARLQ------R 343 (463)
T ss_pred Hhhhhhhcccccccccccccchhhhhcccc------c-ch---hhHHhhhcc------cCcccchhhheeehh------h
Confidence 34456765 469998899988764433211 2 22 778888888 999999887655432 1
Q ss_pred cCCCCCCCCccCCccccCCCCCCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccC
Q 048157 861 IGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAEN 940 (982)
Q Consensus 861 l~~~~~~~~~w~~ls~~~pd~~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RD 940 (982)
....... .+. .. +... ...||+..+||.+||+||||.||+.-+.+.+. ...++.+||.++
T Consensus 344 ~~~~~~~-----~~~---------~~-~~e~-~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~----~~t~~~~~a~~~ 403 (463)
T KOG1081|consen 344 VKESDLV-----DFY---------MV-FIQK-DRIIDAGPKGNYSRFLNHSCQPNVETEKWQVI----GDTRVGLFAPRQ 403 (463)
T ss_pred hhccchh-----hhh---------hh-hhhc-ccccccccccchhhhhcccCCCceeechhhee----cccccccccccc
Confidence 1000000 000 00 1111 22899999999999999999999998887664 336789999999
Q ss_pred CCCCCeEEEecCCCcccccccCCCCcCeeeecCCCCCcccc
Q 048157 941 IPPLQELTYHYNYVIDQVYDSSGNIKKKSCFCGSSECTGRL 981 (982)
Q Consensus 941 I~pGEELTfDYG~~~~~v~ds~G~ikk~~ClCGS~nCRG~L 981 (982)
|++|+||||+|+..-. ...+.|.||+.+|.+.+
T Consensus 404 i~~g~e~t~~~n~~~~--------~~~~~~~~~~e~~~~~~ 436 (463)
T KOG1081|consen 404 IEAGEELTFNYNGNCE--------GNEKRCCCGSENCTETK 436 (463)
T ss_pred cccchhhhheeecccc--------CCcceEeecccccccCC
Confidence 9999999999986422 23578999999998864
No 17
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.15 E-value=1.5e-06 Score=96.82 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCceeEeeccccCCCCeEEEeceEeccHHHHHHh----cCCCceeeccCCCCCCCCccCCccccCCCCCCCCCccccCCc
Q 048157 818 ARGWGVRSLNSIPSGSFICEYAGELLEEKEAERR----TSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGG 893 (982)
Q Consensus 818 ~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R----~~~d~YlFdl~~~~~~~~~w~~ls~~~pd~~~~s~~~~~d~~ 893 (982)
..|--|.|+..+.+|+=|--.+|-|..-.+++.+ ....+|..-....-. -..
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~------------------------caq 191 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR------------------------CAQ 191 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc------------------------hhh
Confidence 4566788899999999999999988765555544 112222110000000 011
Q ss_pred EEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCccc
Q 048157 894 FTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQ 957 (982)
Q Consensus 894 ~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~~~~~ 957 (982)
+++ .-|+||||-|.|||.+..- +. -.+.+-++|||.||||||--||..+..
T Consensus 192 LwL------GPaafINHDCrpnCkFvs~---g~----~tacvkvlRDIePGeEITcFYgs~fFG 242 (453)
T KOG2589|consen 192 LWL------GPAAFINHDCRPNCKFVST---GR----DTACVKVLRDIEPGEEITCFYGSGFFG 242 (453)
T ss_pred hee------ccHHhhcCCCCCCceeecC---CC----ceeeeehhhcCCCCceeEEeecccccC
Confidence 222 2478999999999975421 11 347999999999999999999998764
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.59 E-value=5.3e-05 Score=87.16 Aligned_cols=116 Identities=28% Similarity=0.374 Sum_probs=82.6
Q ss_pred ceeeEEEEEc--CCCceeEeeccccCCCCeEEEeceEeccHHHHHHhcCCCceeeccCCCCCCCCccCCccccCCCCCCC
Q 048157 807 IKFQLEIFKT--EARGWGVRSLNSIPSGSFICEYAGELLEEKEAERRTSNDEYLFDIGNNYNDGSLWGGLSNVMPDAPSS 884 (982)
Q Consensus 807 ~k~~LEVFrT--~~KGWGVRA~e~IpaGtFIcEYvGEVIt~eEae~R~~~d~YlFdl~~~~~~~~~w~~ls~~~pd~~~~ 884 (982)
+...|.|+.+ ...|.||++...|++|+--+-|.|+++... . ....+..|.+.+-..
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~-~-~~~~n~~y~W~I~~~-------------------- 83 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASI-D-SKSANNRYMWEIFSS-------------------- 83 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccc-c-cccccCcceEEEEeC--------------------
Confidence 5566788877 467899999999999999999999982111 1 112234444433110
Q ss_pred CCccccCCcEEEecc--ccCCcccccccCCCC---CceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCccc
Q 048157 885 SCGVVEDGGFTIDAV--EYGNVGRFVNHSCSP---NLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNYVIDQ 957 (982)
Q Consensus 885 s~~~~~d~~~vIDA~--~~GNvARFINHSC~P---N~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~~~~~ 957 (982)
...-++||++ ...|+.||+|=.++. |+.+.- .+ -.|.++|+|+|+|+|||.+.|+.++.+
T Consensus 84 -----d~~~~~iDg~d~~~sNWmRYV~~Ar~~eeQNL~A~Q---~~-----~~Ifyrt~r~I~p~eELlVWY~~e~~~ 148 (396)
T KOG2461|consen 84 -----DNGYEYIDGTDEEHSNWMRYVNSARSEEEQNLLAFQ---IG-----ENIFYRTIRDIRPNEELLVWYGSEYAE 148 (396)
T ss_pred -----CCceEEeccCChhhcceeeeecccCChhhhhHHHHh---cc-----CceEEEecccCCCCCeEEEEeccchHh
Confidence 0134789986 578999999999885 775432 12 238999999999999999999987643
No 19
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=95.48 E-value=0.0065 Score=44.84 Aligned_cols=15 Identities=47% Similarity=1.283 Sum_probs=13.7
Q ss_pred CeeeecCCCCCcccc
Q 048157 967 KKSCFCGSSECTGRL 981 (982)
Q Consensus 967 k~~ClCGS~nCRG~L 981 (982)
.+.|+|||++|||+|
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 478999999999998
No 20
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=93.90 E-value=0.027 Score=47.80 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=23.4
Q ss_pred cCCeeeccCCCCCCCCCCCCcccccc
Q 048157 781 AKPLVYECGPSCKCPPSCYNRVSQQG 806 (982)
Q Consensus 781 ~rplIyECgp~C~C~~sC~NRvvQrG 806 (982)
+|.+.+||...|.|+..|.||.+|+.
T Consensus 24 NR~l~~EC~~~C~~G~~C~NqrFqk~ 49 (51)
T smart00570 24 NRMLLIECSSDCPCGSYCSNQRFQKR 49 (51)
T ss_pred HHHHhhhcCCCCCCCcCccCcccccC
Confidence 57788999888999999999999985
No 21
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=85.19 E-value=0.72 Score=52.96 Aligned_cols=43 Identities=33% Similarity=0.536 Sum_probs=33.0
Q ss_pred ccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCC-eEEEecCCCccc
Q 048157 907 FVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQ-ELTYHYNYVIDQ 957 (982)
Q Consensus 907 FINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGE-ELTfDYG~~~~~ 957 (982)
++||||.||+. +.++. ...++++...+.+++ ||+..|-...+.
T Consensus 208 ~~~hsC~pn~~---~~~~~-----~~~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDG-----RGLALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeE---EEECC-----ceeEEEeecccCCCCCEEEEeecccccC
Confidence 88999999997 33332 236788888888887 999999877654
No 22
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=74.65 E-value=0.57 Score=52.46 Aligned_cols=88 Identities=13% Similarity=-0.092 Sum_probs=69.4
Q ss_pred CcccCceech-hhhhhhhcccCCccCCceecccCCceeEEEEEecCCCCCCCCCCCeEEEEcCCcccCCCCCCCCccccc
Q 048157 563 GVEVGDEFQY-RVELNMIGLHLQIQGGIDYVKHKGKILATSIVASGGYDDNLDNSDVLIYTGQGGNVMNGGKEPEDQKLE 641 (982)
Q Consensus 563 GV~VGd~F~~-R~El~~vGlH~~~~aGId~~~~~G~~~A~SIV~SGgYeDD~D~gD~liYTG~GG~~~~~~kq~~DQkle 641 (982)
++..+-.+-. +.+..-.+.|-|++.++.+..-.+ +.+++.+|+|+++.+.+++..|++-|+.. ....+..-+.+.
T Consensus 10 sf~~~~a~~~i~~~~~~~a~~kp~l~l~v~~~~~~---~~~~~n~~~~~~e~~~~f~~l~~~~g~~~-~~~~~~~p~~~l 85 (301)
T COG3440 10 SFSQRNASLKIFGGNREAAPHKPILLLDVGRKIST---FFITENQGIYETELIEPFIQLWSFFGPKL-QKYGVDAPFELL 85 (301)
T ss_pred chhhhhhhhhhcccccccCCcCceeehhhHhhhhc---ccccccccccchhccchHHHHHhhcCccc-ccCCCCCchHHh
Confidence 4555555544 667778899999999999887666 78999999999999999999999999973 334455667778
Q ss_pred chhHHHHhhHHhc
Q 048157 642 RGNLALANSIHEQ 654 (982)
Q Consensus 642 rGNlAL~~S~~~~ 654 (982)
+|+.++..++..+
T Consensus 86 ~~d~~~h~~~k~~ 98 (301)
T COG3440 86 QGDGKWHLDIKEG 98 (301)
T ss_pred hccchhhhccccc
Confidence 8888888766554
No 23
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=59.79 E-value=7.3 Score=46.37 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=31.6
Q ss_pred ccccCCCCCceeEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCC
Q 048157 907 FVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAENIPPLQELTYHYNY 953 (982)
Q Consensus 907 FINHSC~PN~~vq~V~vd~~d~~~PrIafFA~RDI~pGEELTfDYG~ 953 (982)
+.||+|.+ ....+...+. .+.+.+.++|.+|+|+.+.||.
T Consensus 239 ~~NH~~~~----~~~~~~~~d~---~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEV----IKAGYNQEDE---AVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchh----ccccccCCCC---cEEEEEeeeecCCCeEEEecCC
Confidence 57999999 2233444443 6899999999999999999986
No 24
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=46.12 E-value=11 Score=45.46 Aligned_cols=42 Identities=31% Similarity=0.695 Sum_probs=27.5
Q ss_pred CCCCCCCCCcCCCCccccccCCCCcccCCCCceeccCCeeeccCCCCCCCC-CCCCcc
Q 048157 746 KGCDCTNGCSELGKCACVAKNGGELPYNHNGAIVQAKPLVYECGPSCKCPP-SCYNRV 802 (982)
Q Consensus 746 ~GCdC~~~C~d~~~C~C~~kngg~~pYn~nG~Lv~~rplIyECgp~C~C~~-sC~NRv 802 (982)
-||+|..-|. +++|+|.+. |..++-....|- |+|.. .|.|-+
T Consensus 308 CGCsCr~~Cd-PETCaCSqa----------GIkCQvDr~~fP----CgC~rEgCgNp~ 350 (640)
T KOG3813|consen 308 CGCSCRGVCD-PETCACSQA----------GIKCQVDRGEFP----CGCFREGCGNPE 350 (640)
T ss_pred hCCcccceeC-hhhcchhcc----------CceEeecCcccc----cccchhhcCCCc
Confidence 5899997776 579999873 444332222232 78875 798854
No 25
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=24.77 E-value=20 Score=43.12 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=74.1
Q ss_pred eeccCCCCCCCCCCCCccccccceeeEEEEEcCCCcee---EeeccccCCCCeEEEeceEeccHH--HHHHhcCCCceee
Q 048157 785 VYECGPSCKCPPSCYNRVSQQGIKFQLEIFKTEARGWG---VRSLNSIPSGSFICEYAGELLEEK--EAERRTSNDEYLF 859 (982)
Q Consensus 785 IyECgp~C~C~~sC~NRvvQrG~k~~LEVFrT~~KGWG---VRA~e~IpaGtFIcEYvGEVIt~e--Eae~R~~~d~YlF 859 (982)
.++|++.|.|.+.+.+- . ++. .-+.++..+|+ .++...+..|+||++++|+..-.. -...+ ++
T Consensus 95 c~~ggs~v~~~s~~~~~-~-r~c----~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~------~~ 162 (463)
T KOG1081|consen 95 CFKGGSLVTCKSRIQAP-H-RKC----KPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDP------LL 162 (463)
T ss_pred ccCCCccceeccccccc-c-ccC----cCccCcccccCCcceeeeccccceeEEeEEcCcccccccceecCc------cc
Confidence 35566666666544433 1 111 11234556666 888889999999999999986543 11111 11
Q ss_pred ccCCCCCCCCccCCccccCCCCCCCCCccccCCcEEEeccccCCcccccccCCCCCceeEEEEEcCCCCcccEEEEEEcc
Q 048157 860 DIGNNYNDGSLWGGLSNVMPDAPSSSCGVVEDGGFTIDAVEYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHIMLFAAE 939 (982)
Q Consensus 860 dl~~~~~~~~~w~~ls~~~pd~~~~s~~~~~d~~~vIDA~~~GNvARFINHSC~PN~~vq~V~vd~~d~~~PrIafFA~R 939 (982)
.+........++ ... . -.....++...|+..++|+|++.|+-....+.... .+++..++.+
T Consensus 163 ~~~~~~~~~~f~-------~~~---~-----~~~~~~~~~~~g~~~~~l~~~~~~~s~~~~~~~~~----~~r~~~~~~q 223 (463)
T KOG1081|consen 163 PKGMKHDHVNFF-------GCY---A-----WTHEKRVFPYEGQSSKLIPHSKKPASTMSEKIKEA----KARFGKLKAQ 223 (463)
T ss_pred chhhccccceec-------cch---h-----hHHHhhhhhccchHHHhhhhccccchhhhhhhhcc----cchhhhcccc
Confidence 100000000000 000 0 00122333339999999999999998887776643 3567788888
Q ss_pred CCCCCCe
Q 048157 940 NIPPLQE 946 (982)
Q Consensus 940 DI~pGEE 946 (982)
-++-++-
T Consensus 224 ~~~~~~~ 230 (463)
T KOG1081|consen 224 WEAGIKQ 230 (463)
T ss_pred hhhccch
Confidence 7777766
No 26
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=23.57 E-value=43 Score=28.27 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=11.8
Q ss_pred EEEEccCCCCCCeEEE
Q 048157 934 MLFAAENIPPLQELTY 949 (982)
Q Consensus 934 afFA~RDI~pGEELTf 949 (982)
.+.|.+||++|+.||-
T Consensus 3 vvVA~~di~~G~~i~~ 18 (63)
T PF08666_consen 3 VVVAARDIPAGTVITA 18 (63)
T ss_dssp EEEESSTB-TT-BECT
T ss_pred EEEEeCccCCCCEEcc
Confidence 5789999999999953
Done!