BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048158
         (249 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9H7M6|ZSWM4_HUMAN Zinc finger SWIM domain-containing protein 4 OS=Homo sapiens
           GN=ZSWIM4 PE=2 SV=3
          Length = 989

 Score = 34.7 bits (78), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%)

Query: 31  GCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDC 90
           G G+ + CR+    +  L  C+ + PHC P  R+  L  + R+   DV  L +     D 
Sbjct: 323 GAGMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQLLSRWDKLDVCPLEEGNYSFDG 382

Query: 91  AYIQP 95
             +QP
Sbjct: 383 PSLQP 387


>sp|Q8C7B8|ZSWM4_MOUSE Zinc finger SWIM domain-containing protein 4 OS=Mus musculus
           GN=Zswim4 PE=1 SV=2
          Length = 1101

 Score = 33.1 bits (74), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%)

Query: 31  GCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDC 90
           G G+ + CR+    +  L  C+ + PHC P  RS  L  +  +   DV  L +    +D 
Sbjct: 318 GAGMTDKCRQLWDELGALWVCVILSPHCKPDERSGWLQLLGTWDKLDVCPLEEGNYSLDI 377

Query: 91  AYIQP 95
             +QP
Sbjct: 378 PSLQP 382


>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
           GN=At3g50808 PE=4 SV=1
          Length = 110

 Score = 32.3 bits (72), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 84  LEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANM---CFTCDRIL--QDSFHFCSL 138
           + + +D + I  Y+IN   ++++NQR  + + +  +N+   C  C+  +    S  FCS+
Sbjct: 1   MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60

Query: 139 SCK--------VDYMVYQGQDLSSILYRIDE 161
            CK        +D ++    +++ I   IDE
Sbjct: 61  ECKFRSVLGSQLDELMENSSEVTEISEEIDE 91


>sp|O73683|A4_TETFL Amyloid beta A4 protein OS=Tetraodon fluviatilis GN=app PE=2 SV=1
          Length = 780

 Score = 31.2 bits (69), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 24  MGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPS 61
           M E  +GGCG + N  ++E+  +CL  C S+ P  +PS
Sbjct: 353 MYELMYGGCGGNMNNFESEE--YCLSVCSSVVPTDMPS 388


>sp|Q9UIW2|PLXA1_HUMAN Plexin-A1 OS=Homo sapiens GN=PLXNA1 PE=1 SV=3
          Length = 1896

 Score = 30.8 bits (68), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 32/169 (18%)

Query: 2   GRGDDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPS 61
           G+GD  VV + ++ K    +    +  F  C VH++             CLS      P 
Sbjct: 631 GQGDQRVVKLYLKSKETGKKFASVDFVFYNCSVHQS-------------CLSCVNGSFPC 677

Query: 62  HRSHPLLQVRRYVYHDVVRLGDLEKLI----DCAYIQPYT-----INHAKVIFLNQR--P 110
           H      + R    H+V     LE  +    DC  I P T     +   K I L  R  P
Sbjct: 678 H----WCKYRHVCTHNVADCAFLEGRVNVSEDCPQILPSTQIYVPVGVVKPITLAARNLP 733

Query: 111 QSRSCKGSANMCF----TCDRILQDSFHFCSLSCKVDYMVYQGQDLSSI 155
           Q +S +      F    +  R+    F+  SL C+     Y+G D+S +
Sbjct: 734 QPQSGQRGYECLFHIPGSPARVTALRFNSSSLQCQNSSYSYEGNDVSDL 782


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,966,534
Number of Sequences: 539616
Number of extensions: 3934349
Number of successful extensions: 7084
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7077
Number of HSP's gapped (non-prelim): 10
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)