Query 048158
Match_columns 249
No_of_seqs 135 out of 184
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04640 PLATZ: PLATZ transcri 100.0 3.9E-39 8.4E-44 243.4 5.0 72 71-142 1-72 (72)
2 PF00643 zf-B_box: B-box zinc 96.5 0.00048 1E-08 45.6 -0.6 37 31-70 5-42 (42)
3 cd00021 BBOX B-Box-type zinc f 95.4 0.012 2.6E-07 37.8 2.2 36 31-69 2-38 (39)
4 smart00336 BBOX B-Box-type zin 94.5 0.034 7.4E-07 36.0 2.5 35 31-68 5-40 (42)
5 PF12855 Ecl1: Life-span regul 87.1 0.16 3.5E-06 35.3 -0.3 27 119-145 6-35 (43)
6 PF03884 DUF329: Domain of unk 87.0 0.19 4.1E-06 36.9 0.0 39 121-170 4-47 (57)
7 PRK01343 zinc-binding protein; 80.8 1.2 2.5E-05 33.0 1.9 39 119-168 9-48 (57)
8 COG3024 Uncharacterized protei 74.2 1.2 2.5E-05 33.8 0.3 25 119-143 7-36 (65)
9 PRK00418 DNA gyrase inhibitor; 73.9 1.3 2.7E-05 33.2 0.4 39 119-168 6-49 (62)
10 PF10013 DUF2256: Uncharacteri 68.5 1.8 3.8E-05 30.3 0.2 24 119-142 8-40 (42)
11 PF09889 DUF2116: Uncharacteri 59.3 3.1 6.7E-05 30.8 0.0 29 120-148 4-32 (59)
12 PF02207 zf-UBR: Putative zinc 58.6 4.3 9.4E-05 30.0 0.7 33 41-73 10-48 (71)
13 PF13240 zinc_ribbon_2: zinc-r 56.3 5.1 0.00011 24.2 0.6 16 122-137 2-17 (23)
14 KOG2177 Predicted E3 ubiquitin 56.1 6.9 0.00015 32.5 1.6 37 31-71 88-126 (386)
15 KOG4367 Predicted Zn-finger pr 49.6 4.6 9.9E-05 41.0 -0.6 35 29-66 223-259 (699)
16 COG4338 Uncharacterized protei 47.9 2 4.2E-05 31.3 -2.5 25 118-142 11-44 (54)
17 cd02340 ZZ_NBR1_like Zinc fing 46.7 9.5 0.00021 26.1 0.8 27 44-70 14-43 (43)
18 PF13248 zf-ribbon_3: zinc-rib 41.0 14 0.00031 22.5 0.9 18 120-137 3-20 (26)
19 PLN00209 ribosomal protein S27 39.1 30 0.00064 27.6 2.6 59 61-142 20-85 (86)
20 smart00396 ZnF_UBR1 Putative z 37.8 33 0.00072 25.6 2.6 29 39-67 8-42 (71)
21 COG4068 Uncharacterized protei 33.0 15 0.00033 27.7 0.1 23 119-141 8-30 (64)
22 PTZ00083 40S ribosomal protein 32.3 45 0.00097 26.6 2.6 49 61-132 19-67 (85)
23 PF08002 DUF1697: Protein of u 31.1 20 0.00044 29.8 0.6 71 76-159 16-89 (137)
24 PF06467 zf-FCS: MYM-type Zinc 28.6 17 0.00036 23.8 -0.3 24 119-142 6-41 (43)
25 PF01412 ArfGap: Putative GTPa 28.3 5 0.00011 32.2 -3.4 49 41-90 10-72 (116)
26 KOG2807 RNA polymerase II tran 24.9 37 0.00081 33.3 1.2 17 43-59 352-374 (378)
27 PF12156 ATPase-cat_bd: Putati 23.5 14 0.00031 28.6 -1.5 38 121-158 2-50 (88)
28 smart00105 ArfGap Putative GTP 22.4 11 0.00023 30.2 -2.5 42 43-85 2-57 (112)
29 PF00649 Copper-fist: Copper f 22.3 46 0.001 23.1 1.0 19 54-72 10-35 (40)
30 KOG2932 E3 ubiquitin ligase in 21.8 33 0.00071 33.6 0.2 10 85-94 142-151 (389)
No 1
>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins.
Probab=100.00 E-value=3.9e-39 Score=243.36 Aligned_cols=72 Identities=68% Similarity=1.195 Sum_probs=71.1
Q ss_pred EeccccceeeecccccccccCCeeeeEecCceEEeeecCCCCCCCCCCCCcccccccccCCCceeecccccc
Q 048158 71 RRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKV 142 (249)
Q Consensus 71 RR~sYhdVVRv~DIqkliD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~C~~C~R~L~d~~~FCSL~CKv 142 (249)
|||||||||||+|||||||||+||||+||++||||||+|||+++.+++++.|++|+|+|+|+|+||||+|||
T Consensus 1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv 72 (72)
T PF04640_consen 1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV 72 (72)
T ss_pred CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=96.51 E-value=0.00048 Score=45.62 Aligned_cols=37 Identities=27% Similarity=0.739 Sum_probs=29.9
Q ss_pred ccCCCCCCCCCCcceeecccccccCCCcCCC-CCCCCeeEE
Q 048158 31 GCGVHENCRKNEKNIFCLLCCLSICPHCLPS-HRSHPLLQV 70 (249)
Q Consensus 31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~~-H~~H~vlQI 70 (249)
.|..|.. .+.++||.+|...+|..|... |++|.++.|
T Consensus 5 ~C~~H~~---~~~~~~C~~C~~~~C~~C~~~~H~~H~~~~i 42 (42)
T PF00643_consen 5 KCPEHPE---EPLSLFCEDCNEPLCSECTVSGHKGHKIVPI 42 (42)
T ss_dssp B-SSTTT---SBEEEEETTTTEEEEHHHHHTSTTTSEEEEC
T ss_pred cCccCCc---cceEEEecCCCCccCccCCCCCCCCCEEeEC
Confidence 5888874 348999999999999999765 999987754
No 3
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=95.43 E-value=0.012 Score=37.76 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=28.4
Q ss_pred ccCCCCCCCCCCcceeecccccccCCCcCC-CCCCCCeeE
Q 048158 31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP-SHRSHPLLQ 69 (249)
Q Consensus 31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~-~H~~H~vlQ 69 (249)
.|+.|.. +...+||.+|...+|..|.. .|++|.++.
T Consensus 2 ~C~~H~~---~~~~~fC~~~~~~iC~~C~~~~H~~H~~~~ 38 (39)
T cd00021 2 LCDEHGE---EPLSLFCETDRALLCVDCDLSVHSGHRRVP 38 (39)
T ss_pred CCCccCC---cceEEEeCccChhhhhhcChhhcCCCCEee
Confidence 4788853 24689999999999999965 488898754
No 4
>smart00336 BBOX B-Box-type zinc finger.
Probab=94.49 E-value=0.034 Score=36.05 Aligned_cols=35 Identities=29% Similarity=0.761 Sum_probs=28.2
Q ss_pred ccCCCCCCCCCCcceeecccccccCCCcCCC-CCCCCee
Q 048158 31 GCGVHENCRKNEKNIFCLLCCLSICPHCLPS-HRSHPLL 68 (249)
Q Consensus 31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~~-H~~H~vl 68 (249)
.|+.|.. ....+||.+|...+|..|... |++|+++
T Consensus 5 ~C~~h~~---~~~~~~C~~c~~~iC~~C~~~~H~~H~~~ 40 (42)
T smart00336 5 KCDSHGD---EPAEFFCEECGALLCRTCDEAEHRGHTVV 40 (42)
T ss_pred cCCCCCC---CceEEECCCCCcccccccChhhcCCCcee
Confidence 5777764 335899999999999999865 8889865
No 5
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=87.07 E-value=0.16 Score=35.33 Aligned_cols=27 Identities=26% Similarity=0.792 Sum_probs=23.4
Q ss_pred CCccccccccc---CCCceeecccccccce
Q 048158 119 ANMCFTCDRIL---QDSFHFCSLSCKVDYM 145 (249)
Q Consensus 119 ~~~C~~C~R~L---~d~~~FCSL~CKv~~v 145 (249)
.+.|.+|+|.+ .+...|||-.|++...
T Consensus 6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~ 35 (43)
T PF12855_consen 6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQ 35 (43)
T ss_pred hhHHHHhhccccCCCCCccccCHHHHhHhh
Confidence 46899999999 6779999999999744
No 6
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=87.03 E-value=0.19 Score=36.95 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=19.9
Q ss_pred cccccccccCC----Cce-eecccccccceeeccCCcccccccccCCCccccccc
Q 048158 121 MCFTCDRILQD----SFH-FCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFD 170 (249)
Q Consensus 121 ~C~~C~R~L~d----~~~-FCSL~CKv~~v~~~~~dls~~l~~~~~~d~~~p~~e 170 (249)
.|-+|++...- +|+ |||-.||+- ||- +|...++.+|.-+
T Consensus 4 ~CP~C~k~~~~~~~n~~rPFCS~RCk~i-------DLg----~W~~e~Y~Ip~~~ 47 (57)
T PF03884_consen 4 KCPICGKPVEWSPENPFRPFCSERCKLI-------DLG----RWANEEYRIPGEP 47 (57)
T ss_dssp E-TTT--EEE-SSSSS--SSSSHHHHHH-------HHS-----SSSSS----SSS
T ss_pred cCCCCCCeecccCCCCcCCcccHhhccc-------CHH----HHhcCCcccCCCC
Confidence 58999998765 565 999999986 443 4545566665533
No 7
>PRK01343 zinc-binding protein; Provisional
Probab=80.81 E-value=1.2 Score=32.97 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=28.0
Q ss_pred CCcccccccccCCCc-eeecccccccceeeccCCcccccccccCCCccccc
Q 048158 119 ANMCFTCDRILQDSF-HFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQ 168 (249)
Q Consensus 119 ~~~C~~C~R~L~d~~-~FCSL~CKv~~v~~~~~dls~~l~~~~~~d~~~p~ 168 (249)
...|-+|++....++ -|||-.||.- ||. +|...++.+|-
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~i-------DLg----~W~~e~Y~Ip~ 48 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDI-------DLN----RWLSGSYVIPG 48 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhh-------hHH----HHhCCCcccCC
Confidence 356999999876554 7999999986 444 45455666654
No 8
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.22 E-value=1.2 Score=33.79 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=19.9
Q ss_pred CCcccccccccCC----Cc-eeeccccccc
Q 048158 119 ANMCFTCDRILQD----SF-HFCSLSCKVD 143 (249)
Q Consensus 119 ~~~C~~C~R~L~d----~~-~FCSL~CKv~ 143 (249)
+--|-+|++...- +| -|||-.||+-
T Consensus 7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCklI 36 (65)
T COG3024 7 TVPCPTCGKPVVWGEESPFRPFCSKRCKLI 36 (65)
T ss_pred cccCCCCCCcccccccCCcCcchhHhhhhc
Confidence 3459999998764 55 5999999996
No 9
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=73.89 E-value=1.3 Score=33.25 Aligned_cols=39 Identities=26% Similarity=0.547 Sum_probs=26.9
Q ss_pred CCcccccccccC----CCc-eeecccccccceeeccCCcccccccccCCCccccc
Q 048158 119 ANMCFTCDRILQ----DSF-HFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQ 168 (249)
Q Consensus 119 ~~~C~~C~R~L~----d~~-~FCSL~CKv~~v~~~~~dls~~l~~~~~~d~~~p~ 168 (249)
.-.|-+|++... .+| -|||-.||+- ||.. |...++.+|.
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~I-------DLg~----W~~e~y~Ip~ 49 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLI-------DLGE----WAAEEKRIPS 49 (62)
T ss_pred cccCCCCCCcccccCCCCcCCcccHHHHhh-------hHHH----HHcCCcccCC
Confidence 356999999863 356 5999999996 4544 4445566654
No 10
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.53 E-value=1.8 Score=30.30 Aligned_cols=24 Identities=29% Similarity=0.836 Sum_probs=20.0
Q ss_pred CCcccccccccC---------CCceeecccccc
Q 048158 119 ANMCFTCDRILQ---------DSFHFCSLSCKV 142 (249)
Q Consensus 119 ~~~C~~C~R~L~---------d~~~FCSL~CKv 142 (249)
..+|.+|+|... |..+|||-.|.-
T Consensus 8 ~K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 8 SKICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CCcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 457999999987 567999999963
No 11
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=59.31 E-value=3.1 Score=30.77 Aligned_cols=29 Identities=28% Similarity=0.644 Sum_probs=24.3
Q ss_pred CcccccccccCCCceeecccccccceeec
Q 048158 120 NMCFTCDRILQDSFHFCSLSCKVDYMVYQ 148 (249)
Q Consensus 120 ~~C~~C~R~L~d~~~FCSL~CKv~~v~~~ 148 (249)
.+|..||..+...-.|||-.|+-+...++
T Consensus 4 kHC~~CG~~Ip~~~~fCS~~C~~~~~k~q 32 (59)
T PF09889_consen 4 KHCPVCGKPIPPDESFCSPKCREEYRKRQ 32 (59)
T ss_pred CcCCcCCCcCCcchhhhCHHHHHHHHHHH
Confidence 47999999998889999999997765544
No 12
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=58.61 E-value=4.3 Score=30.05 Aligned_cols=33 Identities=33% Similarity=0.662 Sum_probs=24.4
Q ss_pred CCcceeeccccc----ccCCCc-CCC-CCCCCeeEEEec
Q 048158 41 NEKNIFCLLCCL----SICPHC-LPS-HRSHPLLQVRRY 73 (249)
Q Consensus 41 nE~N~FCldC~~----s~C~~C-~~~-H~~H~vlQIRR~ 73 (249)
++-...|++|.. .+|..| ... |.+|++..++-.
T Consensus 10 ~q~~y~C~tC~~~~~~~iC~~CF~~~~H~gH~~~~~~~~ 48 (71)
T PF02207_consen 10 GQIFYRCLTCSLDESSGICEECFANSCHEGHRVVYYRSS 48 (71)
T ss_dssp T-EEEEETTTBSSTT-BBEHHHHCTSGGGGSSEEEEE--
T ss_pred CCEEEECccCCCCCCEEEchhhCCCCCcCCCcEEEEEeC
Confidence 467788999985 699999 654 999998866543
No 13
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=56.31 E-value=5.1 Score=24.19 Aligned_cols=16 Identities=31% Similarity=0.904 Sum_probs=14.2
Q ss_pred ccccccccCCCceeec
Q 048158 122 CFTCDRILQDSFHFCS 137 (249)
Q Consensus 122 C~~C~R~L~d~~~FCS 137 (249)
|..|+..+.+...||+
T Consensus 2 Cp~CG~~~~~~~~fC~ 17 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCP 17 (23)
T ss_pred CcccCCCCCCcCcchh
Confidence 7889999999899986
No 14
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.12 E-value=6.9 Score=32.52 Aligned_cols=37 Identities=30% Similarity=0.565 Sum_probs=29.9
Q ss_pred ccCCCCCCCCCCcceeecccccccCCCcC--CCCCCCCeeEEE
Q 048158 31 GCGVHENCRKNEKNIFCLLCCLSICPHCL--PSHRSHPLLQVR 71 (249)
Q Consensus 31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~H~vlQIR 71 (249)
.|..|... ..+||..|...+|..|. ..|..|+++.+.
T Consensus 88 ~c~~~~~~----~~~~c~~~~~~~c~~c~~~~~h~~h~~~~~~ 126 (386)
T KOG2177|consen 88 LCEKHGEE----LKLFCEEDEKLLCVLCRESGEHRGHPVLPLE 126 (386)
T ss_pred hhhhcCCc----ceEEecccccccCCCCCCcccccCCccccHH
Confidence 67777653 78999999999999996 369999887664
No 15
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=49.61 E-value=4.6 Score=40.98 Aligned_cols=35 Identities=31% Similarity=0.814 Sum_probs=28.1
Q ss_pred cCccCCCCCCCCCCcceeecccccccCCCcCCC--CCCCC
Q 048158 29 FGGCGVHENCRKNEKNIFCLLCCLSICPHCLPS--HRSHP 66 (249)
Q Consensus 29 F~~C~~H~~~~knE~N~FCldC~~s~C~~C~~~--H~~H~ 66 (249)
-..|..|+.. ...|||+.|.-.+|..|+.. |..|.
T Consensus 223 ~~~ct~h~~e---~~smyc~~ck~pvc~~clee~khs~he 259 (699)
T KOG4367|consen 223 VSTCTDHELE---NHSMYCVQCKMPVCYQCLEEGKHSSHE 259 (699)
T ss_pred hhhccCCCCC---CceEEEEecCChHHHHHHHhhcccchh
Confidence 4578888753 35799999999999999984 87774
No 16
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.89 E-value=2 Score=31.26 Aligned_cols=25 Identities=28% Similarity=0.818 Sum_probs=20.9
Q ss_pred CCCcccccccccC---------CCceeecccccc
Q 048158 118 SANMCFTCDRILQ---------DSFHFCSLSCKV 142 (249)
Q Consensus 118 ~~~~C~~C~R~L~---------d~~~FCSL~CKv 142 (249)
...+|.+|+|.+. |..+|||-.|+-
T Consensus 11 p~KICpvCqRPFsWRkKW~~cWDeVKyCSeRCrr 44 (54)
T COG4338 11 PDKICPVCQRPFSWRKKWARCWDEVKYCSERCRR 44 (54)
T ss_pred chhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999886 567899999993
No 17
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=46.67 E-value=9.5 Score=26.06 Aligned_cols=27 Identities=30% Similarity=0.779 Sum_probs=20.0
Q ss_pred ceeeccccc-ccCCCcCC--CCCCCCeeEE
Q 048158 44 NIFCLLCCL-SICPHCLP--SHRSHPLLQV 70 (249)
Q Consensus 44 N~FCldC~~-s~C~~C~~--~H~~H~vlQI 70 (249)
-.-|+.|.+ .+|..|.. .|..|+.++|
T Consensus 14 ry~C~~C~d~dLC~~C~~~~~H~~H~f~~~ 43 (43)
T cd02340 14 RYKCLVCPDYDLCESCEAKGVHPEHAMLKI 43 (43)
T ss_pred eEECCCCCCccchHHhhCcCCCCCCCEEeC
Confidence 466888865 79999955 4888887754
No 18
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=41.00 E-value=14 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=15.0
Q ss_pred CcccccccccCCCceeec
Q 048158 120 NMCFTCDRILQDSFHFCS 137 (249)
Q Consensus 120 ~~C~~C~R~L~d~~~FCS 137 (249)
..|..|+..+.+..+||+
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~ 20 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCP 20 (26)
T ss_pred CCCcccCCcCCcccccCh
Confidence 468889998888889996
No 19
>PLN00209 ribosomal protein S27; Provisional
Probab=39.10 E-value=30 Score=27.63 Aligned_cols=59 Identities=25% Similarity=0.401 Sum_probs=40.2
Q ss_pred CCCCCCeeEEEeccccceeeecccccccccCCeeeeEecCceEEeeecCCCCCCCCCCCCcccccccccCCC-------c
Q 048158 61 SHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDS-------F 133 (249)
Q Consensus 61 ~H~~H~vlQIRR~sYhdVVRv~DIqkliD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~C~~C~R~L~d~-------~ 133 (249)
-|..++++|-=++-+.|| |--||..||+-.-....+| .|..|+..|..| .
T Consensus 20 khK~k~Lv~~PnS~Fm~V-------kCp~C~n~q~VFShA~t~V----------------~C~~Cg~~L~~PTGGKa~l~ 76 (86)
T PLN00209 20 KHKLKRLVQSPNSFFMDV-------KCQGCFNITTVFSHSQTVV----------------VCGSCQTVLCQPTGGKARLT 76 (86)
T ss_pred hhhceeeecCCCCEEEEE-------ECCCCCCeeEEEecCceEE----------------EccccCCEeeccCCCCeEec
Confidence 366677888777766665 4678888887655555555 399999999765 2
Q ss_pred eeecccccc
Q 048158 134 HFCSLSCKV 142 (249)
Q Consensus 134 ~FCSL~CKv 142 (249)
.=||+..|+
T Consensus 77 ~gc~fr~k~ 85 (86)
T PLN00209 77 EGCSFRKKG 85 (86)
T ss_pred CCceEEecC
Confidence 346665554
No 20
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=37.81 E-value=33 Score=25.62 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=23.1
Q ss_pred CCCCcceeeccccc----ccCCCcCC--CCCCCCe
Q 048158 39 RKNEKNIFCLLCCL----SICPHCLP--SHRSHPL 67 (249)
Q Consensus 39 ~knE~N~FCldC~~----s~C~~C~~--~H~~H~v 67 (249)
.++|.-..|++|.. .+|..|.. .|.+|++
T Consensus 8 ~~~~~~y~C~tC~~~~~~~iC~~Cf~~~~H~gH~~ 42 (71)
T smart00396 8 TGGEVIYRCKTCGLDPTCVLCSDCFRSNCHKGHDY 42 (71)
T ss_pred CCCCEEEECcCCCCCCCEeEChHHCCCCCCCCCCE
Confidence 45677789999974 59999966 4999983
No 21
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=32.99 E-value=15 Score=27.69 Aligned_cols=23 Identities=22% Similarity=0.647 Sum_probs=20.7
Q ss_pred CCcccccccccCCCceeeccccc
Q 048158 119 ANMCFTCDRILQDSFHFCSLSCK 141 (249)
Q Consensus 119 ~~~C~~C~R~L~d~~~FCSL~CK 141 (249)
..+|.+|+..+...-+|||-.|.
T Consensus 8 H~HC~VCg~aIp~de~~CSe~C~ 30 (64)
T COG4068 8 HRHCVVCGKAIPPDEQVCSEECG 30 (64)
T ss_pred CccccccCCcCCCccchHHHHHH
Confidence 35799999999988999999997
No 22
>PTZ00083 40S ribosomal protein S27; Provisional
Probab=32.26 E-value=45 Score=26.58 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=35.7
Q ss_pred CCCCCCeeEEEeccccceeeecccccccccCCeeeeEecCceEEeeecCCCCCCCCCCCCcccccccccCCC
Q 048158 61 SHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDS 132 (249)
Q Consensus 61 ~H~~H~vlQIRR~sYhdVVRv~DIqkliD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~C~~C~R~L~d~ 132 (249)
-|..++++|-=++-+.|| |--||..||+-.-....+| .|..|+..|..|
T Consensus 19 khK~k~Lv~~PnS~Fm~V-------kCp~C~n~q~VFShA~t~V----------------~C~~Cg~~L~~P 67 (85)
T PTZ00083 19 KHKLKRLVQGPNSYFMDV-------KCPGCSQITTVFSHAQTVV----------------LCGGCSSQLCQP 67 (85)
T ss_pred hhhceeEecCCCCeEEEE-------ECCCCCCeeEEEecCceEE----------------EccccCCEeecc
Confidence 366678888777766666 4678889887665555555 388999998765
No 23
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=31.10 E-value=20 Score=29.78 Aligned_cols=71 Identities=20% Similarity=0.470 Sum_probs=38.0
Q ss_pred cceeeecccccc---cccCCeeeeEecCceEEeeecCCCCCCCCCCCCcccccccccCCCceeecccccccceeeccCCc
Q 048158 76 HDVVRLGDLEKL---IDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDL 152 (249)
Q Consensus 76 hdVVRv~DIqkl---iD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~C~~C~R~L~d~~~FCSL~CKv~~v~~~~~dl 152 (249)
++-|+..|+... +-..+|||| |+|+.|||-..+. ....-..+.+.|.+.|-| -+..++.....|
T Consensus 16 ~nki~MaeLr~~l~~~Gf~~V~Ty-i~SGNvvf~~~~~-------~~~l~~~ie~~l~~~fG~-----~v~v~vrs~~el 82 (137)
T PF08002_consen 16 KNKIKMAELREALEDLGFTNVRTY-IQSGNVVFESDRD-------PAELAAKIEKALEERFGF-----DVPVIVRSAEEL 82 (137)
T ss_dssp BS---HHHHHHHHHHCT-EEEEEE-TTTTEEEEEESS--------HHHHHHHHHHHHHHH-TT--------EEEEEHHHH
T ss_pred CCcccHHHHHHHHHHcCCCCceEE-EeeCCEEEecCCC-------hHHHHHHHHHHHHHhcCC-----CeEEEEeeHHHH
Confidence 345677777664 578899998 6999999962211 112233455556554444 255666666777
Q ss_pred ccccccc
Q 048158 153 SSILYRI 159 (249)
Q Consensus 153 s~~l~~~ 159 (249)
..++...
T Consensus 83 ~~i~~~n 89 (137)
T PF08002_consen 83 RAIIAAN 89 (137)
T ss_dssp HHHHTT-
T ss_pred HHHHHHC
Confidence 7777433
No 24
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=28.62 E-value=17 Score=23.78 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=14.3
Q ss_pred CCcccccccccCC-C-----------ceeecccccc
Q 048158 119 ANMCFTCDRILQD-S-----------FHFCSLSCKV 142 (249)
Q Consensus 119 ~~~C~~C~R~L~d-~-----------~~FCSL~CKv 142 (249)
.+.|..|++.+.. + ..|||.+|.-
T Consensus 6 ~~~C~~C~~~~~~~~~~~~~~~~g~~~~FCS~~C~~ 41 (43)
T PF06467_consen 6 MKTCSYCKKYIPNKPTMIEVQYDGKMKQFCSQSCLS 41 (43)
T ss_dssp CEE-TTT--EEECCC----EE-TTTTSCCSSHHHHH
T ss_pred CCcCcccCCcccCCCccccccccCcccChhCHHHHh
Confidence 4568888877632 1 3799999853
No 25
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=28.30 E-value=5 Score=32.23 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=28.9
Q ss_pred CCcceeeccccc------------ccCCCcCCCCCC--CCeeEEEeccccceeeeccccccccc
Q 048158 41 NEKNIFCLLCCL------------SICPHCLPSHRS--HPLLQVRRYVYHDVVRLGDLEKLIDC 90 (249)
Q Consensus 41 nE~N~FCldC~~------------s~C~~C~~~H~~--H~vlQIRR~sYhdVVRv~DIqkliD~ 90 (249)
..-|..|.||.. -+|..|...|+. .++-+| |+.-.|-...+||+.+...
T Consensus 10 ~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~V-kSi~~d~w~~~ev~~~~~~ 72 (116)
T PF01412_consen 10 KPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRV-KSITMDNWSPEEVQRMREG 72 (116)
T ss_dssp STTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--E-EETTTS---HHHHHHHHHS
T ss_pred CcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhc-cccccCCCCHHHHHHHHHH
Confidence 346899999963 179999887874 233344 7777888888888776544
No 26
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.87 E-value=37 Score=33.28 Aligned_cols=17 Identities=53% Similarity=1.216 Sum_probs=14.4
Q ss_pred cceeeccccc------ccCCCcC
Q 048158 43 KNIFCLLCCL------SICPHCL 59 (249)
Q Consensus 43 ~N~FCldC~~------s~C~~C~ 59 (249)
+|.||+||-. ..|+.|.
T Consensus 352 k~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 352 KNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeccchHHHHhhhhcCCCcC
Confidence 8999999963 5799997
No 27
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=23.54 E-value=14 Score=28.61 Aligned_cols=38 Identities=21% Similarity=0.567 Sum_probs=29.0
Q ss_pred cccccccccCC-----------CceeecccccccceeeccCCccccccc
Q 048158 121 MCFTCDRILQD-----------SFHFCSLSCKVDYMVYQGQDLSSILYR 158 (249)
Q Consensus 121 ~C~~C~R~L~d-----------~~~FCSL~CKv~~v~~~~~dls~~l~~ 158 (249)
.|.+|+-.+.+ .-.||.-+|+-.+-+-++.+|..+-..
T Consensus 2 ~C~HCg~~~p~~~~~~~~~~g~~~~FCC~GC~~V~~~i~~~gL~~yY~~ 50 (88)
T PF12156_consen 2 KCYHCGLPVPEGAKITVEIDGEERPFCCPGCQAVYQLIHENGLESYYQK 50 (88)
T ss_pred CCCCCCCCCCCCCCeeeeeCCCccccccHHHHHHHHHHHHcchHHHHhc
Confidence 48889888741 258999999998777777888777633
No 28
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=22.43 E-value=11 Score=30.19 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=26.0
Q ss_pred cceeecccccc------------cCCCcCCCCCCC--CeeEEEeccccceeeecccc
Q 048158 43 KNIFCLLCCLS------------ICPHCLPSHRSH--PLLQVRRYVYHDVVRLGDLE 85 (249)
Q Consensus 43 ~N~FCldC~~s------------~C~~C~~~H~~H--~vlQIRR~sYhdVVRv~DIq 85 (249)
-|..|.||... +|..|...|+.. ++-. .|+.-.|....++|+
T Consensus 2 ~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~-VkSl~md~w~~~~i~ 57 (112)
T smart00105 2 GNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISK-VRSLTLDTWTEEELR 57 (112)
T ss_pred CCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCe-eeecccCCCCHHHHH
Confidence 38899999641 799998888864 3323 344445544444443
No 29
>PF00649 Copper-fist: Copper fist DNA binding domain; InterPro: IPR001083 Some fungal transcription factors contain an N-terminal domain, the copper fist, which seems to be involved in copper-dependent DNA-binding [, ]. These proteins activate the transcription of the metallothionein gene in response to copper. Metallothionein maintains copper levels in yeast [, ]. The copper fist domain, which is similar in structure to metallothionein itself, undergoes a large conformational change on copper-binding that allows DNA-binding. The domain contains a conserved array of zinc-binding residues (Cys-X2-Cys-X8-Cys-X-His) and forms a three-stranded antiparallel beta-sheet with two short helical segments that project from one end of the beta-sheet []. Conserved residues form a basic patch that may be important for DNA binding. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0005507 copper ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1CO4_A.
Probab=22.28 E-value=46 Score=23.12 Aligned_cols=19 Identities=42% Similarity=1.078 Sum_probs=11.3
Q ss_pred cCCCcCCCCC-------CCCeeEEEe
Q 048158 54 ICPHCLPSHR-------SHPLLQVRR 72 (249)
Q Consensus 54 ~C~~C~~~H~-------~H~vlQIRR 72 (249)
.|..|+..|+ +-++++||+
T Consensus 10 AC~~CirGHRss~C~H~dR~L~~v~~ 35 (40)
T PF00649_consen 10 ACESCIRGHRSSTCNHTDRPLVEVRK 35 (40)
T ss_dssp EETTTTTTSGGGG----SS-EEEE-S
T ss_pred EhhhhhCccccCcccCCCccceeecC
Confidence 4777777665 337777775
No 30
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=21.76 E-value=33 Score=33.58 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=6.6
Q ss_pred ccccccCCee
Q 048158 85 EKLIDCAYIQ 94 (249)
Q Consensus 85 qkliD~S~IQ 94 (249)
..+|=|+.+|
T Consensus 142 g~iFmC~~~~ 151 (389)
T KOG2932|consen 142 GGIFMCAAPH 151 (389)
T ss_pred cceEEeecch
Confidence 3467777777
Done!