Query 048159
Match_columns 840
No_of_seqs 290 out of 936
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 11:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 4.6E-18 1.6E-22 148.1 6.0 69 622-690 6-74 (83)
2 2lk2_A Homeobox protein TGIF1; 99.7 9.8E-18 3.3E-22 149.8 4.6 62 628-689 10-71 (89)
3 1x2n_A Homeobox protein pknox1 99.7 5.5E-17 1.9E-21 137.1 6.3 67 622-688 6-72 (73)
4 3k2a_A Homeobox protein MEIS2; 99.7 4.2E-17 1.4E-21 137.1 5.2 63 628-690 3-65 (67)
5 1du6_A PBX1, homeobox protein 99.6 5.2E-16 1.8E-20 127.9 6.5 62 623-684 3-64 (64)
6 1puf_B PRE-B-cell leukemia tra 99.6 9E-16 3.1E-20 129.7 5.9 64 624-687 2-65 (73)
7 1b72_B Protein (PBX1); homeodo 99.6 1E-15 3.5E-20 133.0 6.0 65 624-688 2-66 (87)
8 1k61_A Mating-type protein alp 99.6 2.5E-15 8.4E-20 122.4 6.0 59 626-684 1-59 (60)
9 1le8_B Mating-type protein alp 99.6 3E-15 1E-19 130.0 6.8 64 625-688 4-67 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.5 6.5E-15 2.2E-19 128.6 6.7 60 623-682 27-86 (87)
11 2ecc_A Homeobox and leucine zi 99.4 1.2E-13 4.3E-18 120.1 5.2 61 625-688 5-65 (76)
12 1akh_A Protein (mating-type pr 99.4 2.6E-13 8.8E-18 110.7 5.6 57 623-682 5-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.4 5.1E-13 1.7E-17 110.8 6.4 60 623-685 3-62 (66)
14 2da4_A Hypothetical protein DK 99.3 2.4E-13 8E-18 116.9 3.1 63 622-684 7-70 (80)
15 2cra_A Homeobox protein HOX-B1 99.3 1.2E-12 4.2E-17 109.8 6.7 61 622-685 6-66 (70)
16 2dmu_A Homeobox protein goosec 99.3 1.2E-12 4E-17 109.8 6.2 61 622-685 6-66 (70)
17 2da3_A Alpha-fetoprotein enhan 99.3 1.4E-12 4.8E-17 111.3 6.7 62 621-685 15-76 (80)
18 2da2_A Alpha-fetoprotein enhan 99.3 1.6E-12 5.4E-17 108.8 6.6 61 622-685 6-66 (70)
19 2dmq_A LIM/homeobox protein LH 99.3 1.2E-12 4E-17 112.2 5.8 62 622-686 6-67 (80)
20 2hdd_A Protein (engrailed home 99.3 1.2E-12 4.2E-17 107.0 5.6 58 623-683 3-60 (61)
21 2k40_A Homeobox expressed in E 99.3 8.2E-13 2.8E-17 109.9 4.6 61 624-687 2-62 (67)
22 2da1_A Alpha-fetoprotein enhan 99.3 1E-12 3.4E-17 110.0 5.1 61 622-685 6-66 (70)
23 1ig7_A Homeotic protein MSX-1; 99.3 1.4E-12 4.9E-17 105.3 5.8 57 624-683 1-57 (58)
24 2e1o_A Homeobox protein PRH; D 99.3 1.5E-12 5E-17 109.4 6.0 61 622-685 6-66 (70)
25 2djn_A Homeobox protein DLX-5; 99.3 1.5E-12 5.2E-17 109.3 6.0 61 622-685 6-66 (70)
26 2dmt_A Homeobox protein BARH-l 99.3 3.5E-12 1.2E-16 109.7 8.0 61 622-685 16-76 (80)
27 1jgg_A Segmentation protein EV 99.3 1.8E-12 6.2E-17 105.7 5.7 58 624-684 2-59 (60)
28 1fjl_A Paired protein; DNA-bin 99.3 2.1E-12 7.2E-17 111.2 6.4 62 621-685 16-77 (81)
29 2h1k_A IPF-1, pancreatic and d 99.3 1.9E-12 6.6E-17 106.6 5.6 59 623-684 3-61 (63)
30 2l7z_A Homeobox protein HOX-A1 99.3 3E-12 1E-16 108.6 6.9 62 621-685 5-66 (73)
31 1nk2_P Homeobox protein VND; h 99.3 3.5E-12 1.2E-16 109.0 7.0 64 622-688 8-71 (77)
32 2vi6_A Homeobox protein nanog; 99.3 3E-12 1E-16 105.0 6.1 59 623-684 3-61 (62)
33 3rkq_A Homeobox protein NKX-2. 99.3 3.2E-12 1.1E-16 102.5 5.7 57 623-682 2-58 (58)
34 1wh5_A ZF-HD homeobox family p 99.3 7.4E-12 2.5E-16 108.7 8.3 62 622-683 16-78 (80)
35 2dms_A Homeobox protein OTX2; 99.3 4.1E-12 1.4E-16 109.2 6.2 60 622-684 6-65 (80)
36 2cue_A Paired box protein PAX6 99.3 4.4E-12 1.5E-16 109.1 5.9 64 622-688 6-69 (80)
37 3a02_A Homeobox protein arista 99.3 4.9E-12 1.7E-16 103.1 5.6 56 626-684 2-57 (60)
38 1ahd_P Antennapedia protein mu 99.3 4.1E-12 1.4E-16 106.5 5.2 60 623-685 2-61 (68)
39 2kt0_A Nanog, homeobox protein 99.3 8.2E-12 2.8E-16 107.8 7.2 62 621-685 20-81 (84)
40 1puf_A HOX-1.7, homeobox prote 99.3 8.8E-12 3E-16 106.6 7.3 64 621-687 11-74 (77)
41 2dn0_A Zinc fingers and homeob 99.2 6.2E-12 2.1E-16 107.2 6.3 59 624-685 9-67 (76)
42 1ftt_A TTF-1 HD, thyroid trans 99.2 4.7E-12 1.6E-16 105.9 5.1 60 624-686 3-62 (68)
43 1zq3_P PRD-4, homeotic bicoid 99.2 5.1E-12 1.8E-16 105.7 5.2 60 623-685 2-61 (68)
44 2m0c_A Homeobox protein arista 99.2 1.1E-11 3.8E-16 104.4 7.3 60 622-684 8-67 (75)
45 1yz8_P Pituitary homeobox 2; D 99.2 2.5E-12 8.6E-17 107.4 3.0 60 623-685 3-62 (68)
46 3a01_A Homeodomain-containing 99.2 6.8E-12 2.3E-16 111.3 5.5 64 622-688 16-79 (93)
47 1b8i_A Ultrabithorax, protein 99.2 8E-12 2.7E-16 108.1 5.5 61 622-685 19-79 (81)
48 2d5v_A Hepatocyte nuclear fact 99.2 1.3E-11 4.6E-16 118.6 6.4 61 622-685 96-156 (164)
49 2hi3_A Homeodomain-only protei 99.2 1.5E-11 5E-16 104.2 5.7 59 624-685 3-62 (73)
50 3a03_A T-cell leukemia homeobo 99.2 1.3E-11 4.6E-16 99.6 5.0 54 628-684 2-55 (56)
51 2cuf_A FLJ21616 protein; homeo 99.2 1.4E-11 4.7E-16 109.3 5.5 62 622-686 6-82 (95)
52 1uhs_A HOP, homeodomain only p 99.2 1.6E-11 5.4E-16 103.6 5.5 58 625-685 3-61 (72)
53 3nar_A ZHX1, zinc fingers and 99.2 2E-11 6.9E-16 108.6 6.4 64 623-689 25-88 (96)
54 2ly9_A Zinc fingers and homeob 99.2 2.5E-11 8.6E-16 102.5 6.6 60 623-685 6-65 (74)
55 3d1n_I POU domain, class 6, tr 99.2 2.2E-11 7.5E-16 116.1 6.7 59 622-683 92-150 (151)
56 2da5_A Zinc fingers and homeob 99.2 2.2E-11 7.4E-16 104.0 5.9 57 625-684 9-65 (75)
57 2ecb_A Zinc fingers and homeob 99.2 1.7E-11 5.9E-16 109.2 5.4 56 626-684 14-69 (89)
58 3nau_A Zinc fingers and homeob 99.2 1.5E-11 5.2E-16 104.8 4.6 55 629-686 10-64 (66)
59 2r5y_A Homeotic protein sex co 99.2 1.8E-11 6.1E-16 107.1 5.0 61 621-684 26-86 (88)
60 1wh7_A ZF-HD homeobox family p 99.2 5.4E-11 1.8E-15 103.6 7.5 61 622-683 16-78 (80)
61 1b72_A Protein (homeobox prote 99.1 2.1E-11 7.2E-16 108.5 4.6 61 622-685 33-93 (97)
62 2dmp_A Zinc fingers and homeob 99.1 7.8E-11 2.7E-15 103.9 5.9 56 626-684 16-71 (89)
63 1au7_A Protein PIT-1, GHF-1; c 99.1 1.2E-10 4.1E-15 111.0 6.4 60 622-684 86-145 (146)
64 1e3o_C Octamer-binding transcr 99.1 1.2E-10 4E-15 112.4 6.0 60 622-684 100-159 (160)
65 2e19_A Transcription factor 8; 99.0 1.8E-10 6E-15 96.4 5.7 53 628-683 8-60 (64)
66 2xsd_C POU domain, class 3, tr 99.0 1.4E-10 4.9E-15 112.6 5.6 61 622-685 98-158 (164)
67 2l9r_A Homeobox protein NKX-3. 99.0 2.3E-10 7.8E-15 97.5 5.3 54 630-686 11-64 (69)
68 2cqx_A LAG1 longevity assuranc 99.0 1.2E-10 4E-15 99.4 3.4 58 625-685 10-68 (72)
69 2da6_A Hepatocyte nuclear fact 99.0 2.8E-10 9.6E-15 104.1 6.0 65 622-689 5-90 (102)
70 1lfb_A Liver transcription fac 99.0 3E-10 1E-14 102.8 5.0 63 621-686 7-90 (99)
71 3l1p_A POU domain, class 5, tr 99.0 2.7E-10 9.1E-15 109.5 4.0 60 622-684 95-154 (155)
72 1wi3_A DNA-binding protein SAT 98.9 1.5E-09 5.1E-14 93.6 6.4 62 621-684 5-66 (71)
73 1x2m_A LAG1 longevity assuranc 98.9 1.1E-09 3.9E-14 92.5 4.0 51 632-684 9-59 (64)
74 1mh3_A Maltose binding-A1 home 98.8 1.4E-09 4.7E-14 113.7 3.8 53 627-682 369-421 (421)
75 2h8r_A Hepatocyte nuclear fact 98.8 5.7E-09 2E-13 106.5 6.0 57 622-681 141-218 (221)
76 1ic8_A Hepatocyte nuclear fact 98.7 5.3E-09 1.8E-13 104.7 3.4 59 622-683 114-193 (194)
77 2da7_A Zinc finger homeobox pr 98.6 5.4E-08 1.9E-12 84.1 5.1 46 632-680 14-59 (71)
78 2nzz_A Penetratin conjugated G 95.6 0.0023 8E-08 49.2 0.4 22 668-689 1-22 (37)
79 2ys9_A Homeobox and leucine zi 90.2 0.14 4.8E-06 44.4 2.5 44 630-676 13-56 (70)
80 1hlv_A CENP-B, major centromer 58.1 16 0.00055 32.5 5.8 50 625-680 3-52 (131)
81 3hug_A RNA polymerase sigma fa 53.4 8.3 0.00029 32.8 3.0 52 629-688 37-88 (92)
82 2o8x_A Probable RNA polymerase 44.7 13 0.00043 29.4 2.6 50 629-686 15-64 (70)
83 2glo_A Brinker CG9653-PA; prot 44.2 29 0.001 27.4 4.6 47 626-676 2-48 (59)
84 3mzy_A RNA polymerase sigma-H 42.8 14 0.00049 32.8 2.9 50 629-687 109-158 (164)
85 2p7v_B Sigma-70, RNA polymeras 42.0 17 0.00057 29.2 2.9 56 629-688 5-60 (68)
86 2elh_A CG11849-PA, LD40883P; s 39.6 61 0.0021 27.5 6.2 44 624-675 17-60 (87)
87 1tty_A Sigma-A, RNA polymerase 36.3 22 0.00074 30.1 2.9 56 629-688 18-73 (87)
88 1ku3_A Sigma factor SIGA; heli 35.9 22 0.00076 28.9 2.8 55 629-687 10-65 (73)
89 1tc3_C Protein (TC3 transposas 35.0 47 0.0016 23.5 4.2 43 628-678 4-46 (51)
90 1rp3_A RNA polymerase sigma fa 32.3 24 0.00081 33.5 2.7 50 629-686 187-236 (239)
91 1gs9_A Apolipoprotein E, APOE4 31.5 1.7E+02 0.0057 28.5 8.6 64 496-571 95-158 (165)
92 1x3u_A Transcriptional regulat 30.9 29 0.00099 28.0 2.7 53 629-690 16-68 (79)
93 1fse_A GERE; helix-turn-helix 29.9 45 0.0015 26.4 3.6 55 626-689 8-62 (74)
94 1or7_A Sigma-24, RNA polymeras 29.4 27 0.00094 32.2 2.6 49 629-685 140-188 (194)
95 1je8_A Nitrate/nitrite respons 28.8 42 0.0014 28.2 3.4 54 628-690 20-73 (82)
96 2rnj_A Response regulator prot 28.2 57 0.0019 27.6 4.2 53 628-689 28-80 (91)
97 3t72_q RNA polymerase sigma fa 27.7 58 0.002 29.0 4.3 57 629-689 19-75 (99)
98 1p4w_A RCSB; solution structur 25.5 89 0.003 27.6 5.0 54 627-689 32-85 (99)
99 2k27_A Paired box protein PAX- 25.0 1.3E+02 0.0044 27.6 6.3 50 627-679 81-137 (159)
100 3c57_A Two component transcrip 24.3 45 0.0015 28.8 2.8 53 628-689 26-78 (95)
101 1s7o_A Hypothetical UPF0122 pr 23.3 65 0.0022 29.1 3.8 51 629-687 22-72 (113)
102 3lsg_A Two-component response 21.9 1E+02 0.0035 26.2 4.6 41 634-677 3-43 (103)
103 2q1z_A RPOE, ECF SIGE; ECF sig 21.2 21 0.00072 32.8 0.2 48 629-684 135-182 (184)
104 1xsv_A Hypothetical UPF0122 pr 21.0 56 0.0019 29.4 2.9 51 629-687 25-75 (113)
105 3mqp_B Phorbol-12-myristate-13 20.9 36 0.0012 24.2 1.2 18 11-28 5-24 (25)
106 1iuf_A Centromere ABP1 protein 20.5 83 0.0028 29.2 4.0 48 624-677 6-60 (144)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=148.09 Aligned_cols=69 Identities=39% Similarity=0.744 Sum_probs=63.6
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHhh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIH 690 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~~ 690 (840)
.++|+|+.|+++++.+|++||.+|..+|||+.++|..||.+|||+..||++||+|+|+|.|++++++..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 456677779999999999999999999999999999999999999999999999999999999887643
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.69 E-value=9.8e-18 Score=149.76 Aligned_cols=62 Identities=47% Similarity=0.807 Sum_probs=59.4
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHh
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~ 689 (840)
.-||++++.+|++||.+|..+|||++++|..||++|||+..||+|||+|+|+|.|++++++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 45999999999999999999999999999999999999999999999999999999998864
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=5.5e-17 Score=137.05 Aligned_cols=67 Identities=42% Similarity=0.731 Sum_probs=62.3
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
..+|+++.|++.++.+|+.||.+|..+|||+.++|..||..|||+..||.+||+|+|+|.++++++.
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 4566677799999999999999999999999999999999999999999999999999999998763
No 4
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=4.2e-17 Score=137.07 Aligned_cols=63 Identities=49% Similarity=0.934 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHhh
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIH 690 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~~ 690 (840)
..||++++.+|+.||.+|..+|||+..+|..||..|||+..||++||+|+|+|.|++++++..
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 469999999999999999999999999999999999999999999999999999999988753
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=5.2e-16 Score=127.92 Aligned_cols=62 Identities=35% Similarity=0.631 Sum_probs=58.3
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.+|+++.|++.++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|+|.+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35677789999999999999999999999999999999999999999999999999999874
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.59 E-value=9e-16 Score=129.66 Aligned_cols=64 Identities=36% Similarity=0.680 Sum_probs=60.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhH
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVE 687 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmie 687 (840)
+|+++.|++.++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.++.+.+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5677889999999999999999999999999999999999999999999999999999887654
No 7
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.58 E-value=1e-15 Score=133.02 Aligned_cols=65 Identities=35% Similarity=0.650 Sum_probs=60.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
+|+|+.|++.++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.|+.+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 56778899999999999999999999999999999999999999999999999999999887664
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.56 E-value=2.5e-15 Score=122.43 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=55.7
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 626 PQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 626 krR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
+++.|+++++.+|+.||..|+.+|||+.++|..||.++||+..||.+||+|+|+|.++.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 35679999999999999999999999999999999999999999999999999998763
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=3e-15 Score=130.04 Aligned_cols=64 Identities=23% Similarity=0.396 Sum_probs=58.5
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 625 RPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 625 RkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
++++.|+++++.+|+.||..|+.+|||+..++..||..+||+..||.+||+|+|+|.++..+..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~ 67 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAP 67 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCH
Confidence 3444599999999999999999999999999999999999999999999999999999876654
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.54 E-value=6.5e-15 Score=128.57 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=56.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhcc
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVW 682 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlk 682 (840)
++|+++.|+++++.+|+.||..|+.+|||+..+|..||..+||+..||.+||+|+|+|.|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 445566799999999999999999999999999999999999999999999999999976
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=1.2e-13 Score=120.12 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=55.9
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 625 RPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 625 RkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
.+++.|+++++.+|++||.. +|||+.+++..||+.|||++.||.+||+|+|.|.|+..+.-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 35667999999999999999 89999999999999999999999999999999998876554
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.39 E-value=2.6e-13 Score=110.66 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=47.9
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhcc
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVW 682 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlk 682 (840)
.+|+++.|++.++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3556667999999999999999 79999999999999999999999999999999864
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.37 E-value=5.1e-13 Score=110.83 Aligned_cols=60 Identities=30% Similarity=0.374 Sum_probs=56.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.+|+++.|+++++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4667778999999999999998 89999999999999999999999999999999988754
No 14
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.4e-13 Score=116.88 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=56.3
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEH-FLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH-~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
..+|+|+.|+.+++.+|+.||..+ ..+|||+..++..||.++||+..||.+||+|+|+|.++.
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 446667779999999999999885 445999999999999999999999999999999998774
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.2e-12 Score=109.83 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=56.4
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45667778999999999999998 89999999999999999999999999999999988754
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=109.80 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=56.2
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 45677778999999999999998 99999999999999999999999999999999987653
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=111.32 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=56.5
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
...+|+|+.|+++++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++..
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 345667778999999999999998 89999999999999999999999999999999988753
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=108.83 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=56.3
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 45667778999999999999998 99999999999999999999999999999999988753
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=112.16 Aligned_cols=62 Identities=21% Similarity=0.418 Sum_probs=57.1
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMV 686 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmi 686 (840)
..+|+++.|+++++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 45677888999999999999998 899999999999999999999999999999999987653
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.32 E-value=1.2e-12 Score=107.00 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=52.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccc
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWK 683 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkK 683 (840)
.+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4667778999999999999998 999999999999999999999999999999999876
No 21
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.32 E-value=8.2e-13 Score=109.87 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=56.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhH
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVE 687 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmie 687 (840)
+|+++.|++.++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 567788999999999999987 9999999999999999999999999999999998876544
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=110.04 Aligned_cols=61 Identities=18% Similarity=0.400 Sum_probs=56.4
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45677788999999999999998 89999999999999999999999999999999988753
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=1.4e-12 Score=105.27 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=53.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccc
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWK 683 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkK 683 (840)
+|+++.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467778999999999999998 999999999999999999999999999999999765
No 24
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=1.5e-12 Score=109.36 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=56.0
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|+++++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 45667778999999999999988 99999999999999999999999999999999987653
No 25
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=109.26 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=56.0
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 45667778999999999999987 99999999999999999999999999999999988753
No 26
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.5e-12 Score=109.71 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=56.1
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 44566777999999999999999 99999999999999999999999999999999988754
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.30 E-value=1.8e-12 Score=105.68 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=53.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 567788999999999999998 8999999999999999999999999999999998763
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.30 E-value=2.1e-12 Score=111.18 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=56.0
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
...+|+++.|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 345667777999999999999988 89999999999999999999999999999999988754
No 29
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.30 E-value=1.9e-12 Score=106.61 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=54.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.+|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4567778999999999999998 8999999999999999999999999999999998764
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.30 E-value=3e-12 Score=108.60 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
...+|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 345677778999999999999998 99999999999999999999999999999999988754
No 31
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.29 E-value=3.5e-12 Score=109.03 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=57.6
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
..+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...+.
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 34566667999999999999998 99999999999999999999999999999999998866543
No 32
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.29 E-value=3e-12 Score=105.01 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=51.7
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.+|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 3567778999999999999998 9999999999999999999999999999999998763
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.28 E-value=3.2e-12 Score=102.51 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=52.5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhcc
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVW 682 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlk 682 (840)
++|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 3566777999999999999987 99999999999999999999999999999999864
No 34
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.27 E-value=7.4e-12 Score=108.72 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred CcCCCCCCCChHHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccc
Q 048159 622 HVWRPQRGLPERAVAILRAWLFE-HFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWK 683 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~e-H~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkK 683 (840)
.++|+|+.|+.+++.+|+.+|.. ++.+|||+..++..||..+||++.||++||+|+|.++++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45667777999999999998875 677999999999999999999999999999999999875
No 35
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=4.1e-12 Score=109.17 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=55.6
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
..+|+|+.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 45677778999999999999999 8999999999999999999999999999999998764
No 36
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=4.4e-12 Score=109.10 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=58.1
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
..+|+|+.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45677778999999999999987 99999999999999999999999999999999998876544
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.25 E-value=4.9e-12 Score=103.14 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=49.8
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 626 PQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 626 krR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
+|..|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 4567999999999999988 9999999999999999999999999999999998874
No 38
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.25 E-value=4.1e-12 Score=106.46 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=55.3
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
++|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 3567778999999999999998 89999999999999999999999999999999988753
No 39
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.25 E-value=8.2e-12 Score=107.85 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=56.5
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
...+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345667777999999999999998 99999999999999999999999999999999988753
No 40
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.25 E-value=8.8e-12 Score=106.57 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=57.9
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhH
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVE 687 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmie 687 (840)
...+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...+
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 345667778999999999999998 8999999999999999999999999999999998876544
No 41
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.2e-12 Score=107.24 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=54.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.+.|+.|+++++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.++..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 345777999999999999988 99999999999999999999999999999999988753
No 42
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.24 E-value=4.7e-12 Score=105.91 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=55.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhh
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMV 686 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmi 686 (840)
+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 466777999999999999998 999999999999999999999999999999999887543
No 43
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.24 E-value=5.1e-12 Score=105.69 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=55.4
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 3567778999999999999988 99999999999999999999999999999999988754
No 44
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=104.39 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=55.2
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.++|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 34566777999999999999998 8999999999999999999999999999999998875
No 45
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.23 E-value=2.5e-12 Score=107.39 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=55.3
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.+|+++.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4567778999999999999988 99999999999999999999999999999999987654
No 46
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.22 E-value=6.8e-12 Score=111.33 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=57.9
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
..+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...++
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 44566777999999999999998 89999999999999999999999999999999998876544
No 47
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.22 E-value=8e-12 Score=108.05 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=53.3
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|.+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34667778999999999999998 99999999999999999999999999999999988754
No 48
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.19 E-value=1.3e-11 Score=118.57 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=53.7
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+|+.|++.++.+|+.||.. +|||+..+|..||..+||+..||.+||+|+|+|.++..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 45667778999999999999999 79999999999999999999999999999999988754
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.19 E-value=1.5e-11 Score=104.20 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=53.8
Q ss_pred CCCCCCCChHHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 624 WRPQRGLPERAVAILRAWLF-EHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~-eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.++++.|++.++.+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 35666799999999999998 5 89999999999999999999999999999999988743
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=99.62 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=49.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
+.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 35899999999999998 8999999999999999999999999999999998763
No 51
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=1.4e-11 Score=109.33 Aligned_cols=62 Identities=18% Similarity=0.374 Sum_probs=56.7
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChhhHhhccchhhhhccchhh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTG---------------LSRNQVSNWFINARVRVWKPMV 686 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTG---------------LS~kQVsNWFiNaRrRlkKpmi 686 (840)
..+|+|..|++.++.+|+.||.+ +|||+..++..||..++ |+..||.+||+|+|.|.++...
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 45667777999999999999999 99999999999999999 9999999999999999887643
No 52
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=1.6e-11 Score=103.62 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=53.4
Q ss_pred CCCCCCChHHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 625 RPQRGLPERAVAILRAWLF-EHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 625 RkrR~Lpk~av~iLr~WL~-eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
++++.|+..++.+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 5677899999999999997 4 89999999999999999999999999999999988753
No 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=108.60 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=58.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHh
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~ 689 (840)
.+|+|+.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..++-+
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~ 88 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWY 88 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHH
Confidence 4567778999999999999998 999999999999999999999999999999999998877654
No 54
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=102.54 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=55.6
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 623 VWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 623 ~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.++.|+.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4567778999999999999998 99999999999999999999999999999999988753
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.17 E-value=2.2e-11 Score=116.15 Aligned_cols=59 Identities=22% Similarity=0.410 Sum_probs=54.6
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccc
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWK 683 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkK 683 (840)
.++|+|+.|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34556667999999999999999 999999999999999999999999999999999886
No 56
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.2e-11 Score=103.96 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=52.9
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 625 RPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 625 RkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
++++.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 45566999999999999999 9999999999999999999999999999999998764
No 57
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.17 E-value=1.7e-11 Score=109.23 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=51.7
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 626 PQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 626 krR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
+.+.++.+++.+|+.||.. +|||+..+|..||..|||+..||.+||+|+|.|.++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 3447999999999999998 9999999999999999999999999999999997654
No 58
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=104.77 Aligned_cols=55 Identities=27% Similarity=0.536 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhh
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMV 686 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmi 686 (840)
.-+++++.+|+.+|.. +|||+..|+..||..|||+..||++||+|+|.|+++..+
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 3479999999999999 999999999999999999999999999999999887543
No 59
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.16 E-value=1.8e-11 Score=107.07 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=53.2
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
...+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 345677788999999999999987 9999999999999999999999999999999998764
No 60
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.15 E-value=5.4e-11 Score=103.65 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=54.3
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccC--CCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccc
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFL--HPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWK 683 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~--nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkK 683 (840)
.++|+|+.|+.+++.+|+ -|.+++. +|||+..++..||..+||++.||++||+|+|.++++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 456677779999999999 5777544 999999999999999999999999999999999875
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=2.1e-11 Score=108.50 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=53.7
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
..+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 45667778999999999999987 89999999999999999999999999999999988754
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.8e-11 Score=103.90 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=51.1
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 626 PQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 626 krR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
+.++++++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3345999999999999998 8999999999999999999999999999999887653
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.07 E-value=1.2e-10 Score=111.05 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=53.8
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 44566777999999999999999 9999999999999999999999999999999998763
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.06 E-value=1.2e-10 Score=112.36 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=53.4
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 45667777999999999999999 9999999999999999999999999999999998874
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=96.41 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=49.0
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccc
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWK 683 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkK 683 (840)
..+.++++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34578999999999977 999999999999999999999999999999998765
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.03 E-value=1.4e-10 Score=112.62 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=51.0
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 44566777999999999999999 99999999999999999999999999999999988754
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=97.49 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhh
Q 048159 630 LPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMV 686 (840)
Q Consensus 630 Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmi 686 (840)
++..++..|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++..+
T Consensus 11 ~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 11 MSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 689999999999988 999999999999999999999999999999999887653
No 68
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.01 E-value=1.2e-10 Score=99.38 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=52.4
Q ss_pred CCCCCCChHHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 625 RPQRGLPERAVAILRAWL-FEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 625 RkrR~Lpk~av~iLr~WL-~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
++++.++.+++.+|+..| .. ++||+..++..||.++||+..||.+||+|+|.|.++.+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 456668888899999999 66 89999999999999999999999999999999988754
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.8e-10 Score=104.09 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=57.9
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChhhHhhccchhhhh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQT---------------------GLSRNQVSNWFINARVR 680 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qT---------------------GLS~kQVsNWFiNaRrR 680 (840)
.++|+|..|++.++.+|+.+|.. +|||+..+|+.||..+ .|+..+|.+||+|+|.|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 45667777999999999999998 8999999999999999 79999999999999999
Q ss_pred ccchhhHHh
Q 048159 681 VWKPMVEEI 689 (840)
Q Consensus 681 lkKpmiee~ 689 (840)
.++....++
T Consensus 82 ~kr~~~~~~ 90 (102)
T 2da6_A 82 EAFRQKLAM 90 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhHhhh
Confidence 887765544
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.98 E-value=3e-10 Score=102.83 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChhhHhhccchhhh
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQ------------------TG---LSRNQVSNWFINARV 679 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~q------------------TG---LS~kQVsNWFiNaRr 679 (840)
+..+|+|..|++.++.+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|.
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 344566777999999999999988 999999999999999 88 999999999999999
Q ss_pred hccchhh
Q 048159 680 RVWKPMV 686 (840)
Q Consensus 680 RlkKpmi 686 (840)
+.++...
T Consensus 84 k~k~k~~ 90 (99)
T 1lfb_A 84 EEAFRHK 90 (99)
T ss_dssp TTSCCC-
T ss_pred HHHHhch
Confidence 8876543
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.96 E-value=2.7e-10 Score=109.49 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=54.5
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
..+|+|+.|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 45667777999999999999977 9999999999999999999999999999999998763
No 72
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.91 E-value=1.5e-09 Score=93.56 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=56.0
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 621 QHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 621 ~~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
..+||+|+.|+.++..+|+..|..- +|||+.++++.||.+|||++.+|..||+|+|--++.+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 4578888899999999999998873 6999999999999999999999999999999877643
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.86 E-value=1.1e-09 Score=92.51 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 632 ERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 632 k~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.....+|+..|..+ ++||+..++..||+++||+..||..||+|+|.+.++.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34588999999432 7999999999999999999999999999999998764
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.82 E-value=1.4e-09 Score=113.71 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=49.6
Q ss_pred CCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhcc
Q 048159 627 QRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVW 682 (840)
Q Consensus 627 rR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlk 682 (840)
++.|.+.++..|+++|.. +|||+..+|.+||++|||++.||++||+|+|+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 445889999999999988 89999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.76 E-value=5.7e-09 Score=106.51 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=51.5
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhHhhccchhhhh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTG---------------------LSRNQVSNWFINARVR 680 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTG---------------------LS~kQVsNWFiNaRrR 680 (840)
..+|.|..|++.++.+|+.||.. +|||+..+|+.||..++ ||..||.|||+|+|++
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 44556667999999999999999 99999999999999988 8999999999999987
Q ss_pred c
Q 048159 681 V 681 (840)
Q Consensus 681 l 681 (840)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 5
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.69 E-value=5.3e-09 Score=104.71 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=52.2
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhHhhccchhhhh
Q 048159 622 HVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTG---------------------LSRNQVSNWFINARVR 680 (840)
Q Consensus 622 ~~kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTG---------------------LS~kQVsNWFiNaRrR 680 (840)
..+|+|..|++.++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 34566677999999999999999 89999999999999999 9999999999999999
Q ss_pred ccc
Q 048159 681 VWK 683 (840)
Q Consensus 681 lkK 683 (840)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=5.4e-08 Score=84.09 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhh
Q 048159 632 ERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 680 (840)
Q Consensus 632 k~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrR 680 (840)
++++.+|++.|.. +|||+.+|+..||..+||++..|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6789999999999 999999999999999999999999999999974
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.61 E-value=0.0023 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.1
Q ss_pred hhHhhccchhhhhccchhhHHh
Q 048159 668 NQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 668 kQVsNWFiNaRrRlkKpmiee~ 689 (840)
.||..||+|+|.|.+|...+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 4899999999999999877754
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.20 E-value=0.14 Score=44.42 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccch
Q 048159 630 LPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFIN 676 (840)
Q Consensus 630 Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiN 676 (840)
.++...++|++.|.+ |-...+++...|+.+++|+..||+.||.-
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 355567899999999 67899999999999999999999999964
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=58.06 E-value=16 Score=32.49 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=38.6
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhh
Q 048159 625 RPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 680 (840)
Q Consensus 625 RkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrR 680 (840)
++++.|+.+.+..+-.++.+ ++.++ ...+|+..|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 35678999998777777766 56655 2368999999999999998776543
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=53.41 E-value=8.3 Score=32.84 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
.||+..+.+|.-.|++. | .-.++|..+|++..-|.++...+|+++++-+.++
T Consensus 37 ~L~~~~r~vl~l~~~~g----~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG----W----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp TSCHHHHHHHHHHHTSC----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999997766552 3 3478999999999999999999999998766443
No 82
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=44.68 E-value=13 Score=29.38 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhh
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMV 686 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmi 686 (840)
.||+....+|.-.|.+ .+ .-.++|...|++...|.++...+|.++++-+.
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 4889999998876654 23 24689999999999999999999999887654
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=44.18 E-value=29 Score=27.37 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccch
Q 048159 626 PQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFIN 676 (840)
Q Consensus 626 krR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiN 676 (840)
+++.|+++.+..+...+.. -++.......+|++.|++...|.+|...
T Consensus 2 ~r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 3557888887655554433 2332223679999999999999999653
No 84
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.84 E-value=14 Score=32.79 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhH
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVE 687 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmie 687 (840)
.||+..+.+|. .+++ .| .-.++|+.+|++...|.++...+|+++++-+.+
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999988 3333 34 346799999999999999999999998876644
No 85
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.00 E-value=17 Score=29.24 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
.||+....+|...|.-.-...+ .-.++|..+|++..-|.++...+++++++.+..+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~ 60 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 60 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999888766511000123 3367999999999999999999999998876554
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=39.56 E-value=61 Score=27.47 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccc
Q 048159 624 WRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFI 675 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFi 675 (840)
+++++.++.+.+......+.. -+ -...+|+++|++...|.+|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 446677988876444444433 12 256889999999999999974
No 87
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.33 E-value=22 Score=30.14 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=42.4
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHH
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEE 688 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee 688 (840)
.||+....+|...|+-.-..++ .-.++|..+|++..-|.++...+++++++.+...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999998777651000133 3467999999999999999999999998876554
No 88
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.86 E-value=22 Score=28.89 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhcc-chhhH
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVW-KPMVE 687 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlk-Kpmie 687 (840)
.||+....+|...|+-.-..++ .-.++|..+|++...|.+|...++.+++ ..+..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~ 65 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESRT 65 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhH
Confidence 4899999999877651000133 2358999999999999999999999998 55443
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=34.98 E-value=47 Score=23.51 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=28.9
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhh
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINAR 678 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaR 678 (840)
+.|+++....+...+.+ -+ ...++|+.+|++..-|..|....+
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 35777666444444433 23 256899999999999999986443
No 90
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.30 E-value=24 Score=33.51 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhh
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMV 686 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmi 686 (840)
.||+....+|.-.|.+ .+ .-.++|+.+|++...|..+...+|.++++-+.
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999876654 34 34679999999999999999999999987653
No 91
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=31.52 E-value=1.7e+02 Score=28.54 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 048159 496 PEYQEMRAKLLYLQEEVSKRYKLYHQQLQMVVSSFESVAGLSGATPYVSLAFKAISKNFRCLKSAIMNQLKHVAKA 571 (840)
Q Consensus 496 ~E~Q~kKaKLl~MLeEVdrRY~qY~~qmq~VvsSFe~vaG~gaA~pYt~lAlKamSRhFr~LrnaI~~QL~~~~k~ 571 (840)
.+.+..+.+|...++||..+-..|.++++.++. ||+.-.-+-|.-++..|+..+...+..+...
T Consensus 95 ~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~------------~~~EelR~kl~P~~eeL~~~~~~~~eeLr~k 158 (165)
T 1gs9_A 95 KELQAAQARLGADMEDVRGRLVQYRGEVQAMLG------------QSTEELRVRLASHLRKLRKRLLRDADDLQKR 158 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 478889999999999999999999999887765 4444444445555556666666555554443
No 92
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.94 E-value=29 Score=28.05 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHhh
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIH 690 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~~ 690 (840)
.||+....+|.-+ .+ .+ .-.++|..+|++...|.++...++.+++.....++.
T Consensus 16 ~L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~ 68 (79)
T 1x3u_A 16 TLSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLV 68 (79)
T ss_dssp HHCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred hCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3788888888763 33 23 235899999999999999999999999987776653
No 93
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.85 E-value=45 Score=26.40 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHh
Q 048159 626 PQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 626 krR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~ 689 (840)
....|++....+|..+ .+ .+ .-.++|..+|++..-|..++...+.++......++
T Consensus 8 ~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 62 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQA 62 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 4456999999999774 33 33 34679999999999999999999999877665554
No 94
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=29.43 E-value=27 Score=32.21 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchh
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPM 685 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpm 685 (840)
.||+....+|.-.+.+ -++ -.++|..+|++...|.++...+|+++++.+
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3788888888766555 232 357999999999999999999999988755
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=28.85 E-value=42 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHhh
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIH 690 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~~ 690 (840)
..|++....+|.-. .+ -+ .-.++|+.+|++..-|.++..+++++++.....++.
T Consensus 20 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp GGSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 35899999999773 33 23 456899999999999999999999999887776654
No 96
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=28.18 E-value=57 Score=27.61 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=41.8
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHh
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~ 689 (840)
..||+....+|.- +.+ .|.. .++|..+|++..-|.++..++|++++.....++
T Consensus 28 ~~Lt~~e~~vl~l-~~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 80 (91)
T 2rnj_A 28 EMLTEREMEILLL-IAK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQA 80 (91)
T ss_dssp GGCCSHHHHHHHH-HHT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHH
T ss_pred hcCCHHHHHHHHH-HHc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 3589999999976 444 2332 468999999999999999999999987766554
No 97
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=27.66 E-value=58 Score=29.03 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHh
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~ 689 (840)
.||+....++.--|+..-..++ .-.++|..+|++...|.+....+++++++.+..+.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~ 75 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 75 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888776652111233 45789999999999999999999999998876654
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.47 E-value=89 Score=27.63 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHh
Q 048159 627 QRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 627 rR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~ 689 (840)
...|++....+|.-+ .+- + .-.++|..+|++..-|.++..+.++++.-.-..++
T Consensus 32 ~~~Lt~re~~Vl~l~-~~G----~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~el 85 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF-AEG----F----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIAL 85 (99)
T ss_dssp SSSCCHHHHHHHHHH-HHT----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred cCCCCHHHHHHHHHH-HcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 456999999999664 442 2 23789999999999999999999999876555554
No 99
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.02 E-value=1.3e+02 Score=27.59 Aligned_cols=50 Identities=8% Similarity=-0.012 Sum_probs=31.0
Q ss_pred CCCCChHHHHHHHHHHHHccCCCCCCHHHHHH-HHHHh------CCChhhHhhccchhhh
Q 048159 627 QRGLPERAVAILRAWLFEHFLHPYPTDTDKHM-LATQT------GLSRNQVSNWFINARV 679 (840)
Q Consensus 627 rR~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~-LA~qT------GLS~kQVsNWFiNaRr 679 (840)
++.++.+....+.+++.+ +|--+..+... |..+. .++...|..|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 456777788888888877 55555444332 32221 3788888888765433
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.28 E-value=45 Score=28.78 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhHHh
Q 048159 628 RGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEI 689 (840)
Q Consensus 628 R~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmiee~ 689 (840)
..|++....+|.-. .+ -+ .-.++|..+|++..-|.++..++|++++.....++
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 78 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQA 78 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC-
T ss_pred hcCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 45899999999875 33 23 23789999999999999999999999987655543
No 101
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.31 E-value=65 Score=29.11 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhH
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVE 687 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmie 687 (840)
.||+....++.-.+.+ -+ .-.++|..+|++..-|.+|...+|.++++-+.+
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998877665 23 246899999999999999999999998876544
No 102
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=21.93 E-value=1e+02 Score=26.19 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchh
Q 048159 634 AVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINA 677 (840)
Q Consensus 634 av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNa 677 (840)
.+..+.+|+.+|+..|-++ ...||+..|++...+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4567788999987775455 4568999999999998888665
No 103
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=21.21 E-value=21 Score=32.78 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccch
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKP 684 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKp 684 (840)
.||+....+|.-.+.+. .+| .++|..+|++...|.++...+|+++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888888887766653 232 3589999999999999999999998764
No 104
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.03 E-value=56 Score=29.36 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=41.3
Q ss_pred CCChHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhccchhhhhccchhhH
Q 048159 629 GLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVE 687 (840)
Q Consensus 629 ~Lpk~av~iLr~WL~eH~~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlkKpmie 687 (840)
.||+....+|.-.+++ -+ .-.++|..+|++..-|.++...+|.++++-+.+
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999888776655 23 336899999999999999999999999876544
No 105
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=20.92 E-value=36 Score=24.22 Aligned_cols=18 Identities=50% Similarity=0.626 Sum_probs=14.0
Q ss_pred hhHHHHhhh--hhhHHHHhh
Q 048159 11 SHVAQQSRR--DKLRIQQHL 28 (840)
Q Consensus 11 ~hvaq~~rr--dklr~q~~l 28 (840)
.-.|+|.|| |||-+.|-|
T Consensus 5 veca~qlrr~gdkln~rqkl 24 (25)
T 3mqp_B 5 VECATQLRRFGDKLNFRQKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhHHHHHHHhh
Confidence 457999999 898877644
No 106
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=20.49 E-value=83 Score=29.17 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=36.7
Q ss_pred CCCCCCCChHHHHHHHHHH-HHccCCCCCCHHHHHHHHH----Hh--CCChhhHhhccchh
Q 048159 624 WRPQRGLPERAVAILRAWL-FEHFLHPYPTDTDKHMLAT----QT--GLSRNQVSNWFINA 677 (840)
Q Consensus 624 kRkrR~Lpk~av~iLr~WL-~eH~~nPYPS~eEK~~LA~----qT--GLS~kQVsNWFiNa 677 (840)
+++|+.|+-+++..|..|+ .+ ||-.+.. +||+ +. +++...|+.|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678889999999999988 45 6655543 4555 67 78999999998663
Done!