BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048162
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
 pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
          Length = 439

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 6/109 (5%)

Query: 44  FQVPLIFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLREGSNGKLMVDCNGEG 103
           F  P ++FY+  P+ S    D  KV+K+ALSRALV +YP AGRL+   +G++ ++CNGEG
Sbjct: 39  FHTPSVYFYR--PTGSSNFFD-AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEG 95

Query: 104 VLFTEADADFSLDQLGDDEIKPPCPYLDELLYDVPGSEGILGCPLLLIR 152
           VLF EA++D  +D  GD     P   L  L+  V  S+GI    LL+++
Sbjct: 96  VLFVEAESDGVVDDFGD---FAPTLELRRLIPAVDYSQGISSYALLVLQ 141


>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 2)
          Length = 439

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 6/109 (5%)

Query: 44  FQVPLIFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLREGSNGKLMVDCNGEG 103
           F  P ++FY+  P+ S    D  KV+K+ALSRALV +YP AGRL+   +G++ ++CNGEG
Sbjct: 39  FHTPSVYFYR--PTGSSNFFD-AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEG 95

Query: 104 VLFTEADADFSLDQLGDDEIKPPCPYLDELLYDVPGSEGILGCPLLLIR 152
           VLF EA++D  +D  GD     P   L  L+  V  S+GI    LL+++
Sbjct: 96  VLFVEAESDGVVDDFGD---FAPTLELRRLIPAVDYSQGISSYALLVLQ 141


>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
 pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
          Length = 436

 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 6/109 (5%)

Query: 44  FQVPLIFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLREGSNGKLMVDCNGEG 103
           F  P ++FY+  P+ S    D  KV+K+ALSRALV +YP AGRL+   +G++ ++CNGEG
Sbjct: 36  FHTPSVYFYR--PTGSSNFFD-AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEG 92

Query: 104 VLFTEADADFSLDQLGDDEIKPPCPYLDELLYDVPGSEGILGCPLLLIR 152
           VLF EA++D  +D  GD     P   L  L+  V  S+GI    LL+++
Sbjct: 93  VLFVEAESDGVVDDFGD---FAPTLELRRLIPAVDYSQGISSYALLVLQ 138


>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
 pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
          Length = 421

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 12/111 (10%)

Query: 11  VKRRAPELIGPAL-APKSHEVKQLSDIDDQQGLWFQVPLIFFYKNNPSPSMKGKDPVKV- 68
           +++ + ELI P+   P+S +  ++S +D Q  L   +P I FY   P+P     DP +  
Sbjct: 5   MEKVSEELILPSSPTPQSLKCYKISHLD-QLLLTCHIPFILFY---PNPLDSNLDPAQTS 60

Query: 69  --IKEALSRALVYYYPFAGRLREGSNGKLMVDCNGEGVLFTEADADFSLDQ 117
             +K++LS+ L ++YP AGR+   S+    VDCN  GV F EA     L Q
Sbjct: 61  QHLKQSLSKVLTHFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQ 107


>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
           Complexed With Malonyl-coa
 pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
           Complexed With Malonyl-coa
 pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
 pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
          Length = 454

 Score = 31.6 bits (70), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 42  LWFQVPLI---FFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLR---EGSNGKL 95
            W + P I   FFY+   + S   +  V  IK +LS  L ++YPF G+L      +    
Sbjct: 35  FWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPE 94

Query: 96  MVDCNGEGVLFTEADADFSLDQLGDDE 122
           +    G+ V  T A+ +  L++L  + 
Sbjct: 95  ICYVEGDSVAVTFAECNLDLNELTGNH 121


>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
           Methionine Derivative
 pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
           Methionine Derivative
          Length = 454

 Score = 31.2 bits (69), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 42  LWFQVPLI---FFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLR---EGSNGKL 95
            W + P I   FFY+   + S   +  V  IK +LS  L ++YPF G+L      +    
Sbjct: 35  FWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPE 94

Query: 96  MVDCNGEGVLFTEADADFSLDQLGDDE 122
           +    G+ V  T A+ +  L++L  + 
Sbjct: 95  ICYVEGDSVAVTFAECNLDLNELTGNH 121


>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
           Complex With Galactose
 pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
           Complex With Galactose
 pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
 pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
          Length = 595

 Score = 30.8 bits (68), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 63  KDPVKVIKEALSRALVYYYPFAGRLREGSNGKLMVDCNGEGVLFTEADADFSLDQLGDDE 122
           K+    ++E L +  +  Y F G    G+N   M  C+  G L       +  D L D+E
Sbjct: 257 KELADAVREVLEQGSINLYMFHG----GTNFGFMNGCSARGTLDLPQVTSYDYDALLDEE 312

Query: 123 IKPPCPYL 130
             P   YL
Sbjct: 313 GNPTAKYL 320


>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
           (Ntmat1) Complexed With Malonyl-Coa
          Length = 453

 Score = 30.4 bits (67), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 49  IFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLR-----EGSNGKLMVDCNGEG 103
           I FYK   S     +  +  +K++LS  L YY P AG +       G      V  N   
Sbjct: 40  ILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVS 99

Query: 104 VLFTEADADFS 114
           V+F+E+D DF+
Sbjct: 100 VIFSESDXDFN 110


>pdb|2JOZ|A Chain A, Solution Nmr Structure Of Protein Yxef, Northeast
           Structural Genomics Consortium Target Sr500a
          Length = 135

 Score = 28.1 bits (61), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 80  YYPFAGRLREGSNGKLMVDCNGEGVLFTEADA 111
           YYP    L+ G NG L+ + NG+    T  ++
Sbjct: 83  YYPLKSTLKRGENGTLIWEQNGQRKTMTRIES 114


>pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
 pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
 pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
          Length = 248

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 19  IGPALAPKSHEVKQLSDIDDQQGL---WFQVPLIFFYKNNPSPSMKGKDPVKVIKEALSR 75
           I     PK    + LS + D+  L   +   P     + NP+PS +  +  KVI+EAL  
Sbjct: 55  IAAVYGPKEMHPRHLS-LPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALES 113

Query: 76  A-LVYYYP 82
           A LV  +P
Sbjct: 114 AVLVELFP 121


>pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
          Length = 245

 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 19  IGPALAPKSHEVKQLSDIDDQQGL---WFQVPLIFFYKNNPSPSMKGKDPVKVIKEALSR 75
           I     PK    + LS + D+  L   +   P     + NP+PS +  +  KVI+EAL  
Sbjct: 52  IAAVYGPKEMHPRHLS-LPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALES 110

Query: 76  A-LVYYYP 82
           A LV  +P
Sbjct: 111 AVLVELFP 118


>pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
 pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
 pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
           Inorganic Phosphate
 pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
           Inorganic Phosphate
          Length = 250

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 43  WFQVPLIFFYKNNPSPSMKGKDPVKVIKEALSRA-LVYYYP 82
           +   P     + NP+PS +  +  KVI+EAL  A LV  +P
Sbjct: 83  YHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFP 123


>pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 With And Without Nad Cofactor
 pdb|3OWO|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 With And Without Nad Cofactor
 pdb|3OWO|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 With And Without Nad Cofactor
 pdb|3OWO|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 With And Without Nad Cofactor
 pdb|3OX4|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
 pdb|3OX4|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
 pdb|3OX4|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
 pdb|3OX4|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
           Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
          Length = 383

 Score = 26.2 bits (56), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 78  VYYYPFAGRLREGSNGKLMVDCNGEG 103
            +Y PF   + EGS  K + D NG G
Sbjct: 5   TFYIPFVNEMGEGSLEKAIKDLNGSG 30


>pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase
 pdb|2QVH|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
           With O- Succinyl Benzoate (Osb)
 pdb|2QVH|B Chain B, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
           With O- Succinyl Benzoate (Osb)
          Length = 327

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 90  GSNGKLMVDCNGEGVLFTEADADFSLDQLGDDEIKPPCPYLDEL 133
           G  G++ +D NG   + T       LD+   + ++ PC  +DEL
Sbjct: 122 GPRGRVRIDVNGAWDVDTAVRXIRLLDRFELEYVEQPCATVDEL 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.142    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,050,213
Number of Sequences: 62578
Number of extensions: 215510
Number of successful extensions: 370
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 16
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)