Query 048162
Match_columns 152
No_of_seqs 102 out of 1057
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 11:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048162.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048162hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zq1c3 d.128.1.5 (C:5-276,C:4 38.4 14 0.001 27.7 3.9 24 93-116 170-193 (321)
2 d1f7la_ d.150.1.2 (A:) Holo-(a 38.3 37 0.0027 21.0 5.5 36 68-103 55-95 (118)
3 d2d6fc3 d.128.1.5 (C:1-270,C:3 29.6 22 0.0016 26.5 3.7 22 95-116 171-192 (319)
4 d2f2ab2 d.128.1.5 (B:4-293) As 26.2 30 0.0022 25.4 3.8 21 96-116 135-155 (290)
5 d1q9ja1 c.43.1.2 (A:1-175) Pol 20.4 81 0.0059 19.7 4.9 35 64-98 34-68 (175)
6 d1bvsa3 b.40.4.2 (A:1-63) DNA 19.1 37 0.0027 18.7 2.4 22 82-103 4-25 (63)
7 g2gac.1 d.153.1.5 (A:,B:) Glyc 18.1 1E+02 0.0074 22.1 5.3 49 64-112 212-268 (275)
8 d2joza1 b.60.1.1 (A:2-127) Hyp 16.8 40 0.0029 20.9 2.3 29 75-103 77-105 (126)
9 d2vqei1 d.14.1.1 (I:2-128) Rib 16.6 35 0.0026 21.8 2.1 20 63-82 70-89 (127)
10 d1ixra2 b.40.4.2 (A:1-62) DNA 12.6 53 0.0039 17.9 1.9 33 83-117 5-37 (62)
No 1
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=38.39 E-value=14 Score=27.70 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=17.6
Q ss_pred CcEEEEecCCCeEEEEEEecCCcc
Q 048162 93 GKLMVDCNGEGVLFTEADADFSLD 116 (152)
Q Consensus 93 g~~~i~cn~~Gv~fveA~~~~~l~ 116 (152)
+...++.|..|++++|=.+.-++.
T Consensus 170 ~~~lvD~NRaGvPLiEIVTePd~~ 193 (321)
T d1zq1c3 170 KEVIYRLDRLGIPLIEISTTPDIH 193 (321)
T ss_dssp TEEEEESTTTTCEEEEEECCTTBC
T ss_pred CceEEeecccCcceEEEecccccc
Confidence 344578899999999988764443
No 2
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=38.25 E-value=37 Score=21.02 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhh-----cCCceeeeecCCCcEEEEecCCC
Q 048162 68 VIKEALSRALVYY-----YPFAGRLREGSNGKLMVDCNGEG 103 (152)
Q Consensus 68 ~Lk~sLs~~L~~f-----~plAGRl~~~~~g~~~i~cn~~G 103 (152)
+.|+|+.++|..- .+--=.+..+++|+|.+.+++.+
T Consensus 55 AaKEA~~Kalg~g~~~~~~~~dieI~~~~~G~P~~~~~~~~ 95 (118)
T d1f7la_ 55 AAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLS 95 (118)
T ss_dssp HHHHHHHHHHTSCSBTTBCGGGCEEEECTTSCEEEEETTTE
T ss_pred HHHHHHHHhcccCCCCCCcccEEEEEECCCCCcEEEecCCc
Confidence 6899999999641 11111233345677777666544
No 3
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.60 E-value=22 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=16.2
Q ss_pred EEEEecCCCeEEEEEEecCCcc
Q 048162 95 LMVDCNGEGVLFTEADADFSLD 116 (152)
Q Consensus 95 ~~i~cn~~Gv~fveA~~~~~l~ 116 (152)
..++.|..||+++|=.++-++.
T Consensus 171 ~~vD~NRaGvPLiEIVTePd~~ 192 (319)
T d2d6fc3 171 VVFRLDRLGIPLVEITTDPSMS 192 (319)
T ss_dssp EEEETTSTTCEEEEEECCSCCC
T ss_pred eEecccccCceeEEEEeecccC
Confidence 3467888999999988764433
No 4
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=26.18 E-value=30 Score=25.42 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=16.0
Q ss_pred EEEecCCCeEEEEEEecCCcc
Q 048162 96 MVDCNGEGVLFTEADADFSLD 116 (152)
Q Consensus 96 ~i~cn~~Gv~fveA~~~~~l~ 116 (152)
.|+.|..|++++|-.++-++.
T Consensus 135 lvD~NRaGvPLiEIVTePd~~ 155 (290)
T d2f2ab2 135 LVDLNRQGTPLIEIVSEPDIR 155 (290)
T ss_dssp EEECSSTTCEEEEEEECTTBC
T ss_pred EEeeccCCCceeeeeccCCcC
Confidence 467789999999988764443
No 5
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.39 E-value=81 Score=19.75 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHhhhhhcCCceeeeecCCCcEEEE
Q 048162 64 DPVKVIKEALSRALVYYYPFAGRLREGSNGKLMVD 98 (152)
Q Consensus 64 ~~v~~Lk~sLs~~L~~f~plAGRl~~~~~g~~~i~ 98 (152)
...++|++++-.++..++-|-.+++.+++|.+...
T Consensus 34 ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~~ 68 (175)
T d1q9ja1 34 IDVDALSDAFDALLETHPVLASHLEQSSDGGWNLV 68 (175)
T ss_dssp CCHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHhchhheEEEEEeCCeeEEEE
Confidence 34789999999999999999999988776655443
No 6
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=19.10 E-value=37 Score=18.70 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=17.2
Q ss_pred CCceeeeecCCCcEEEEecCCC
Q 048162 82 PFAGRLREGSNGKLMVDCNGEG 103 (152)
Q Consensus 82 plAGRl~~~~~g~~~i~cn~~G 103 (152)
-+.|++...+.+...|+||+=|
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvG 25 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIG 25 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEE
T ss_pred EEEEEEEEECCCEEEEEECCEE
Confidence 3679998888889999997433
No 7
>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Flavobacterium meningosepticum [TaxId: 238]}
Probab=18.07 E-value=1e+02 Score=22.06 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHhhhhhcC--------CceeeeecCCCcEEEEecCCCeEEEEEEec
Q 048162 64 DPVKVIKEALSRALVYYYP--------FAGRLREGSNGKLMVDCNGEGVLFTEADAD 112 (152)
Q Consensus 64 ~~v~~Lk~sLs~~L~~f~p--------lAGRl~~~~~g~~~i~cn~~Gv~fveA~~~ 112 (152)
.+-+..++++.+.+..+.. ..|=|..+.+|+....||.+|..|.....+
T Consensus 212 ~~~~A~~~ai~~~~~~~~~~g~~~~~~~~G~Iavd~~G~~~~~~~t~~m~~av~~~~ 268 (275)
T g2gac.1 212 TPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQK 268 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSCEEEEESSSCCCEEEEETT
T ss_pred CHHHHHHHHHHHHHHHhccCCccccccceeEEEEcCCCCEEEEEcCCCceEEEECCC
Confidence 4567778888887765432 346678888999999999999888777543
No 8
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=16.84 E-value=40 Score=20.87 Aligned_cols=29 Identities=38% Similarity=0.708 Sum_probs=23.8
Q ss_pred HhhhhhcCCceeeeecCCCcEEEEecCCC
Q 048162 75 RALVYYYPFAGRLREGSNGKLMVDCNGEG 103 (152)
Q Consensus 75 ~~L~~f~plAGRl~~~~~g~~~i~cn~~G 103 (152)
+-|-+|||+--.|.+.++|.+...-|++-
T Consensus 77 ~ylg~~~p~kstlkrg~n~tliw~~~g~~ 105 (126)
T d2joza1 77 QYLGPYYPLKSTLKRGENGTLIWEQNGQR 105 (126)
T ss_dssp EEESTTCSCEEEEEECSTTCEEEEETTEE
T ss_pred EEcCCCcchhhHHhCCCCCcEEEEecCce
Confidence 45789999999999999888877777653
No 9
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=16.58 E-value=35 Score=21.76 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=17.4
Q ss_pred CCcHHHHHHHHHHhhhhhcC
Q 048162 63 KDPVKVIKEALSRALVYYYP 82 (152)
Q Consensus 63 ~~~v~~Lk~sLs~~L~~f~p 82 (152)
...+.+++.++|++|+.|.|
T Consensus 70 ~gQa~Air~aIaRaL~~~~~ 89 (127)
T d2vqei1 70 SGQIDAIKLGIARALVQYNP 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHHHCH
Confidence 34689999999999999976
No 10
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=12.57 E-value=53 Score=17.94 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=21.4
Q ss_pred CceeeeecCCCcEEEEecCCCeEEEEEEecCCccc
Q 048162 83 FAGRLREGSNGKLMVDCNGEGVLFTEADADFSLDQ 117 (152)
Q Consensus 83 lAGRl~~~~~g~~~i~cn~~Gv~fveA~~~~~l~~ 117 (152)
+.|++.....+...|+|| ||-+-.--+..+++.
T Consensus 5 i~G~i~~~~~~~ivi~~~--GvGY~v~v~~~~~~~ 37 (62)
T d1ixra2 5 LRGLVLKKEAGGFVLLAG--GVGFFLQAPTPFLQA 37 (62)
T ss_dssp EEEEEEEECSSEEEEECS--SEEEEEECCHHHHHH
T ss_pred EEEEEEEEcCCEEEEEEC--CEEEEEEECHHHHhh
Confidence 568888878888999997 555544333333333
Done!