Query 048163
Match_columns 350
No_of_seqs 188 out of 1770
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 7.4E-25 2.5E-29 215.0 14.3 149 191-350 131-291 (549)
2 1vt4_I APAF-1 related killer D 99.8 4.8E-21 1.6E-25 193.9 10.9 139 190-342 130-282 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.8 1.7E-20 5.9E-25 200.1 12.9 152 185-349 121-282 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.8 2.4E-18 8.1E-23 170.3 11.9 142 187-342 123-274 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 7.7E-18 2.6E-22 129.7 7.9 79 12-90 2-82 (115)
6 1w5s_A Origin recognition comp 99.3 4.7E-12 1.6E-16 119.2 9.2 152 187-338 21-192 (412)
7 1fnn_A CDC6P, cell division co 99.2 1.5E-10 5E-15 108.1 12.5 152 187-339 16-173 (389)
8 2qby_B CDC6 homolog 3, cell di 99.2 3.7E-11 1.3E-15 112.0 8.0 146 188-335 20-174 (384)
9 2v1u_A Cell division control p 99.1 1.4E-10 4.8E-15 108.0 10.7 147 187-335 18-177 (387)
10 2qby_A CDC6 homolog 1, cell di 99.1 1.5E-10 5E-15 107.8 6.9 147 187-337 19-175 (386)
11 2qen_A Walker-type ATPase; unk 99.0 2.2E-10 7.4E-15 105.2 7.2 136 186-337 10-176 (350)
12 1njg_A DNA polymerase III subu 99.0 2.9E-09 1E-13 92.0 10.7 137 188-336 23-167 (250)
13 2fna_A Conserved hypothetical 98.9 2.7E-09 9.1E-14 98.1 9.5 136 186-337 11-182 (357)
14 2chg_A Replication factor C sm 98.9 7.3E-09 2.5E-13 88.3 11.1 126 188-335 17-142 (226)
15 3te6_A Regulatory protein SIR3 98.7 3.5E-08 1.2E-12 89.1 9.6 117 188-307 20-144 (318)
16 1sxj_B Activator 1 37 kDa subu 98.7 2.7E-08 9.3E-13 90.1 7.4 125 188-335 21-147 (323)
17 1iqp_A RFCS; clamp loader, ext 98.5 1.1E-07 3.8E-12 86.2 6.2 125 188-335 25-150 (327)
18 1jbk_A CLPB protein; beta barr 98.5 1.2E-07 4.2E-12 78.5 5.9 45 188-238 22-66 (195)
19 1jr3_A DNA polymerase III subu 98.4 8.3E-07 2.8E-11 82.0 9.7 136 188-335 16-159 (373)
20 2chq_A Replication factor C sm 98.4 5.6E-07 1.9E-11 81.2 7.4 122 188-335 17-142 (319)
21 2p65_A Hypothetical protein PF 98.2 7.4E-07 2.5E-11 73.5 4.7 45 188-238 22-66 (187)
22 3n70_A Transport activator; si 98.2 2.5E-06 8.4E-11 68.0 7.3 114 189-334 2-115 (145)
23 3u61_B DNA polymerase accessor 98.2 1.8E-06 6.1E-11 78.4 7.2 121 188-336 26-147 (324)
24 3ec2_A DNA replication protein 98.2 2.3E-06 7.8E-11 70.7 6.4 122 193-335 19-143 (180)
25 2w58_A DNAI, primosome compone 98.1 4.3E-06 1.5E-10 70.4 6.8 118 196-334 37-158 (202)
26 1sxj_D Activator 1 41 kDa subu 98.1 4.1E-06 1.4E-10 76.7 6.9 135 188-334 37-172 (353)
27 3syl_A Protein CBBX; photosynt 98.0 1.6E-05 5.4E-10 71.4 8.5 130 189-335 32-179 (309)
28 1hqc_A RUVB; extended AAA-ATPa 98.0 4E-06 1.4E-10 75.9 4.1 50 188-238 12-61 (324)
29 3h4m_A Proteasome-activating n 98.0 8.1E-06 2.8E-10 72.5 6.0 52 187-238 16-74 (285)
30 3pvs_A Replication-associated 97.9 1.3E-05 4.4E-10 76.0 7.3 104 188-321 26-132 (447)
31 1sxj_E Activator 1 40 kDa subu 97.9 2.9E-05 9.8E-10 71.1 8.9 45 188-238 14-59 (354)
32 2qz4_A Paraplegin; AAA+, SPG7, 97.9 3.8E-05 1.3E-09 67.1 9.0 51 188-238 6-62 (262)
33 2gno_A DNA polymerase III, gam 97.9 4.8E-05 1.6E-09 68.4 9.7 119 193-335 2-122 (305)
34 3co5_A Putative two-component 97.9 5.9E-06 2E-10 65.6 3.1 47 188-238 4-50 (143)
35 1sxj_C Activator 1 40 kDa subu 97.9 2E-05 6.7E-10 72.0 7.0 124 188-334 25-149 (340)
36 1a5t_A Delta prime, HOLB; zinc 97.9 7.6E-05 2.6E-09 68.0 10.6 118 194-335 8-148 (334)
37 2kjq_A DNAA-related protein; s 97.9 8.4E-06 2.9E-10 65.3 3.6 101 215-348 36-146 (149)
38 2z4s_A Chromosomal replication 97.8 3.2E-05 1.1E-09 73.3 7.7 102 215-334 130-236 (440)
39 3bos_A Putative DNA replicatio 97.8 3.4E-06 1.2E-10 72.6 0.8 60 188-255 28-90 (242)
40 3uk6_A RUVB-like 2; hexameric 97.8 5.9E-05 2E-09 69.4 8.2 48 188-239 44-94 (368)
41 3pfi_A Holliday junction ATP-d 97.8 4.3E-05 1.5E-09 69.5 7.1 51 187-238 28-78 (338)
42 1sxj_A Activator 1 95 kDa subu 97.7 5.7E-05 2E-09 73.0 8.2 111 188-307 39-160 (516)
43 4fcw_A Chaperone protein CLPB; 97.7 6.9E-05 2.4E-09 67.2 8.0 123 188-319 17-143 (311)
44 1d2n_A N-ethylmaleimide-sensit 97.7 3.4E-05 1.2E-09 68.1 5.7 47 189-238 34-87 (272)
45 2bjv_A PSP operon transcriptio 97.7 4.6E-05 1.6E-09 66.9 5.8 47 188-238 6-52 (265)
46 3eie_A Vacuolar protein sortin 97.7 0.00018 6.2E-09 65.1 9.9 51 188-238 18-74 (322)
47 1ojl_A Transcriptional regulat 97.6 0.0001 3.5E-09 66.2 7.4 47 188-238 2-48 (304)
48 2cvh_A DNA repair and recombin 97.6 0.00029 1E-08 59.5 9.5 87 214-306 19-116 (220)
49 3pxg_A Negative regulator of g 97.6 0.00016 5.6E-09 68.9 8.6 45 188-238 180-224 (468)
50 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00054 1.8E-08 69.4 12.8 45 188-238 186-230 (758)
51 1qvr_A CLPB protein; coiled co 97.6 8.8E-05 3E-09 76.2 6.7 45 188-238 170-214 (854)
52 1l8q_A Chromosomal replication 97.5 0.00015 5E-09 65.6 6.7 102 214-334 36-140 (324)
53 2vhj_A Ntpase P4, P4; non- hyd 97.5 9.4E-05 3.2E-09 66.4 4.8 69 215-306 123-193 (331)
54 2qp9_X Vacuolar protein sortin 97.4 0.00039 1.3E-08 63.8 8.9 51 188-238 51-107 (355)
55 3b9p_A CG5977-PA, isoform A; A 97.4 0.00045 1.5E-08 61.5 9.0 51 188-238 21-77 (297)
56 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.001 3.4E-08 60.2 11.4 51 188-238 12-68 (322)
57 2zan_A Vacuolar protein sortin 97.4 0.0019 6.4E-08 61.1 13.6 51 188-238 134-190 (444)
58 3cf0_A Transitional endoplasmi 97.4 0.00045 1.5E-08 61.9 8.3 51 188-238 15-72 (301)
59 3pxi_A Negative regulator of g 97.3 0.00057 2E-08 69.2 9.2 45 188-238 180-224 (758)
60 2qgz_A Helicase loader, putati 97.3 0.00018 6.1E-09 64.7 4.8 41 195-238 135-175 (308)
61 1lv7_A FTSH; alpha/beta domain 97.3 0.001 3.5E-08 57.9 9.3 51 188-238 12-68 (257)
62 3d8b_A Fidgetin-like protein 1 97.2 0.00052 1.8E-08 63.0 7.3 51 188-238 84-140 (357)
63 3hu3_A Transitional endoplasmi 97.2 0.00032 1.1E-08 67.1 5.4 51 188-238 204-261 (489)
64 3vfd_A Spastin; ATPase, microt 97.2 0.00087 3E-08 62.2 8.2 52 187-238 114-171 (389)
65 3hr8_A Protein RECA; alpha and 97.1 0.0017 5.9E-08 59.3 9.0 86 214-306 60-150 (356)
66 3pxi_A Negative regulator of g 97.1 0.0004 1.4E-08 70.4 4.9 124 188-333 491-628 (758)
67 3m6a_A ATP-dependent protease 97.0 0.0016 5.5E-08 63.2 8.8 51 188-238 81-131 (543)
68 4b4t_K 26S protease regulatory 97.0 0.0013 4.6E-08 61.5 7.4 52 187-238 171-229 (428)
69 4b4t_L 26S protease subunit RP 97.0 0.0014 4.8E-08 61.5 7.6 52 187-238 180-238 (437)
70 1qvr_A CLPB protein; coiled co 97.0 0.00063 2.1E-08 69.8 5.6 137 188-334 558-710 (854)
71 3io5_A Recombination and repai 97.0 0.0035 1.2E-07 56.0 9.5 85 217-306 30-122 (333)
72 1v5w_A DMC1, meiotic recombina 96.9 0.0026 9E-08 58.0 8.8 91 213-304 120-228 (343)
73 4b4t_J 26S protease regulatory 96.9 0.0013 4.6E-08 60.8 6.7 51 188-238 148-205 (405)
74 2c9o_A RUVB-like 1; hexameric 96.9 0.0013 4.5E-08 62.4 6.8 50 188-238 37-86 (456)
75 1xp8_A RECA protein, recombina 96.9 0.0035 1.2E-07 57.6 9.4 85 214-305 73-162 (366)
76 1n0w_A DNA repair protein RAD5 96.9 0.0027 9.2E-08 54.4 8.1 91 215-306 24-130 (243)
77 3t15_A Ribulose bisphosphate c 96.8 0.0015 5.1E-08 58.2 6.1 26 213-238 34-59 (293)
78 4b4t_M 26S protease regulatory 96.8 0.0015 5E-08 61.3 6.2 51 188-238 181-238 (434)
79 1odf_A YGR205W, hypothetical 3 96.8 0.0077 2.6E-07 53.4 10.6 82 212-293 28-116 (290)
80 3cf2_A TER ATPase, transitiona 96.8 0.0056 1.9E-07 61.8 10.1 98 188-306 204-308 (806)
81 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0028 9.7E-08 53.7 7.0 116 215-335 23-168 (235)
82 2zr9_A Protein RECA, recombina 96.7 0.0051 1.7E-07 56.1 8.9 85 214-305 60-149 (349)
83 1rz3_A Hypothetical protein rb 96.7 0.002 6.9E-08 53.8 5.7 43 193-238 3-45 (201)
84 4b4t_H 26S protease regulatory 96.7 0.0025 8.6E-08 59.9 6.6 51 188-238 209-266 (467)
85 2z43_A DNA repair and recombin 96.7 0.0048 1.6E-07 55.7 8.3 90 214-304 106-212 (324)
86 2ce7_A Cell division protein F 96.7 0.0031 1.1E-07 60.0 7.3 51 188-238 16-72 (476)
87 2b8t_A Thymidine kinase; deoxy 96.6 0.00082 2.8E-08 57.3 2.8 112 215-334 12-125 (223)
88 2i1q_A DNA repair and recombin 96.6 0.0053 1.8E-07 55.3 8.4 90 214-304 97-213 (322)
89 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0011 3.8E-08 67.1 3.8 133 188-334 458-607 (758)
90 4b4t_I 26S protease regulatory 96.5 0.0029 9.9E-08 58.9 5.8 51 188-238 182-239 (437)
91 2px0_A Flagellar biosynthesis 96.5 0.0088 3E-07 53.2 8.7 25 214-238 104-128 (296)
92 1u94_A RECA protein, recombina 96.5 0.0074 2.5E-07 55.2 8.1 85 214-305 62-151 (356)
93 1ofh_A ATP-dependent HSL prote 96.4 0.002 6.7E-08 57.4 3.9 51 188-238 15-73 (310)
94 3tqc_A Pantothenate kinase; bi 96.4 0.012 4E-07 53.0 8.9 45 192-238 71-115 (321)
95 1ypw_A Transitional endoplasmi 96.3 0.0048 1.6E-07 62.8 6.7 52 187-238 203-261 (806)
96 3c8u_A Fructokinase; YP_612366 96.3 0.0034 1.2E-07 52.7 4.7 38 197-238 8-45 (208)
97 1in4_A RUVB, holliday junction 96.3 0.0015 5E-08 59.4 2.6 50 188-238 25-74 (334)
98 2dhr_A FTSH; AAA+ protein, hex 96.3 0.0083 2.8E-07 57.4 7.9 52 187-238 30-87 (499)
99 3lw7_A Adenylate kinase relate 96.3 0.0021 7.1E-08 51.9 2.9 20 216-235 2-21 (179)
100 3kb2_A SPBC2 prophage-derived 96.2 0.0023 8E-08 51.5 3.1 23 216-238 2-24 (173)
101 1gvn_B Zeta; postsegregational 96.2 0.006 2E-07 54.1 5.8 42 196-238 15-56 (287)
102 3sr0_A Adenylate kinase; phosp 96.2 0.0056 1.9E-07 51.5 5.2 76 217-306 2-85 (206)
103 1zp6_A Hypothetical protein AT 96.2 0.0032 1.1E-07 51.9 3.7 24 215-238 9-32 (191)
104 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0065 2.2E-07 57.3 6.0 88 216-304 152-254 (473)
105 3ice_A Transcription terminati 96.1 0.0051 1.8E-07 56.5 5.0 53 199-257 163-216 (422)
106 1qhx_A CPT, protein (chloramph 96.1 0.0029 9.9E-08 51.4 3.1 23 216-238 4-26 (178)
107 1pzn_A RAD51, DNA repair and r 96.1 0.009 3.1E-07 54.5 6.6 92 214-306 130-242 (349)
108 2r62_A Cell division protease 96.1 0.003 1E-07 55.1 3.3 51 188-238 11-67 (268)
109 3dm5_A SRP54, signal recogniti 96.1 0.051 1.7E-06 51.0 11.8 25 214-238 99-123 (443)
110 1g5t_A COB(I)alamin adenosyltr 96.1 0.003 1E-07 52.5 3.0 118 216-335 29-163 (196)
111 1ly1_A Polynucleotide kinase; 96.1 0.0036 1.2E-07 50.9 3.4 22 216-237 3-24 (181)
112 3lda_A DNA repair protein RAD5 96.1 0.02 6.8E-07 53.2 8.8 90 214-304 177-282 (400)
113 3vaa_A Shikimate kinase, SK; s 96.1 0.0033 1.1E-07 52.4 3.2 24 215-238 25-48 (199)
114 1kgd_A CASK, peripheral plasma 96.0 0.0037 1.3E-07 51.2 3.4 24 215-238 5-28 (180)
115 2r44_A Uncharacterized protein 96.0 0.0038 1.3E-07 56.4 3.7 43 188-238 27-69 (331)
116 3nbx_X ATPase RAVA; AAA+ ATPas 96.0 0.0056 1.9E-07 58.6 5.0 44 188-239 22-65 (500)
117 2rhm_A Putative kinase; P-loop 96.0 0.005 1.7E-07 50.6 4.0 25 214-238 4-28 (193)
118 3upu_A ATP-dependent DNA helic 96.0 0.019 6.6E-07 54.3 8.6 22 217-238 47-68 (459)
119 2p5t_B PEZT; postsegregational 96.0 0.0076 2.6E-07 52.3 5.3 43 195-238 13-55 (253)
120 3uie_A Adenylyl-sulfate kinase 96.0 0.0045 1.5E-07 51.6 3.6 24 215-238 25-48 (200)
121 1kag_A SKI, shikimate kinase I 95.9 0.0031 1.1E-07 51.0 2.5 23 216-238 5-27 (173)
122 3asz_A Uridine kinase; cytidin 95.9 0.0049 1.7E-07 51.7 3.6 25 214-238 5-29 (211)
123 1nks_A Adenylate kinase; therm 95.9 0.0049 1.7E-07 50.6 3.5 23 216-238 2-24 (194)
124 1knq_A Gluconate kinase; ALFA/ 95.9 0.0059 2E-07 49.5 3.9 25 214-238 7-31 (175)
125 3bh0_A DNAB-like replicative h 95.9 0.036 1.2E-06 49.7 9.4 50 214-267 67-116 (315)
126 3tau_A Guanylate kinase, GMP k 95.9 0.0049 1.7E-07 51.8 3.5 24 215-238 8-31 (208)
127 1vma_A Cell division protein F 95.9 0.036 1.2E-06 49.5 9.2 43 196-238 83-127 (306)
128 3tr0_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 51.2 3.3 24 215-238 7-30 (205)
129 3t61_A Gluconokinase; PSI-biol 95.8 0.0041 1.4E-07 51.8 2.8 24 215-238 18-41 (202)
130 4gp7_A Metallophosphoesterase; 95.8 0.0042 1.4E-07 50.4 2.8 22 215-236 9-30 (171)
131 3trf_A Shikimate kinase, SK; a 95.8 0.0048 1.6E-07 50.5 3.1 24 215-238 5-28 (185)
132 1uf9_A TT1252 protein; P-loop, 95.8 0.0062 2.1E-07 50.5 3.8 25 213-237 6-30 (203)
133 4eun_A Thermoresistant glucoki 95.8 0.0051 1.7E-07 51.2 3.2 24 215-238 29-52 (200)
134 3hws_A ATP-dependent CLP prote 95.8 0.0079 2.7E-07 55.1 4.8 50 189-238 16-74 (363)
135 3jvv_A Twitching mobility prot 95.8 0.012 4.2E-07 53.8 5.9 112 216-339 124-235 (356)
136 1ex7_A Guanylate kinase; subst 95.8 0.0048 1.7E-07 50.9 3.0 23 216-238 2-24 (186)
137 2ga8_A Hypothetical 39.9 kDa p 95.8 0.012 4E-07 53.5 5.7 45 192-238 3-47 (359)
138 1ukz_A Uridylate kinase; trans 95.8 0.0069 2.4E-07 50.4 4.0 26 213-238 13-38 (203)
139 2j41_A Guanylate kinase; GMP, 95.7 0.006 2.1E-07 50.8 3.4 24 215-238 6-29 (207)
140 1ye8_A Protein THEP1, hypothet 95.7 0.0055 1.9E-07 50.2 3.0 22 217-238 2-23 (178)
141 1kht_A Adenylate kinase; phosp 95.7 0.0056 1.9E-07 50.2 3.1 23 216-238 4-26 (192)
142 2yvu_A Probable adenylyl-sulfa 95.7 0.0084 2.9E-07 49.1 4.1 26 213-238 11-36 (186)
143 3a00_A Guanylate kinase, GMP k 95.7 0.0045 1.5E-07 50.9 2.4 23 216-238 2-24 (186)
144 2bdt_A BH3686; alpha-beta prot 95.7 0.0066 2.3E-07 49.9 3.4 22 216-237 3-24 (189)
145 2qt1_A Nicotinamide riboside k 95.6 0.0077 2.6E-07 50.3 3.8 26 213-238 19-44 (207)
146 2xxa_A Signal recognition part 95.6 0.077 2.6E-06 49.7 11.0 42 197-238 79-123 (433)
147 2c95_A Adenylate kinase 1; tra 95.6 0.0068 2.3E-07 49.9 3.4 24 215-238 9-32 (196)
148 1qf9_A UMP/CMP kinase, protein 95.6 0.009 3.1E-07 49.0 4.1 25 214-238 5-29 (194)
149 1tev_A UMP-CMP kinase; ploop, 95.6 0.0072 2.4E-07 49.7 3.4 24 215-238 3-26 (196)
150 1g8p_A Magnesium-chelatase 38 95.6 0.0069 2.4E-07 54.9 3.6 45 188-238 24-68 (350)
151 1y63_A LMAJ004144AAA protein; 95.6 0.008 2.7E-07 49.3 3.6 25 214-238 9-33 (184)
152 2qor_A Guanylate kinase; phosp 95.6 0.0054 1.9E-07 51.2 2.6 25 214-238 11-35 (204)
153 2if2_A Dephospho-COA kinase; a 95.6 0.0067 2.3E-07 50.5 3.2 22 216-237 2-23 (204)
154 3umf_A Adenylate kinase; rossm 95.6 0.0079 2.7E-07 50.9 3.6 27 212-238 26-52 (217)
155 1cke_A CK, MSSA, protein (cyti 95.6 0.0067 2.3E-07 51.3 3.2 22 216-237 6-27 (227)
156 2ze6_A Isopentenyl transferase 95.6 0.0073 2.5E-07 52.4 3.4 23 216-238 2-24 (253)
157 1lvg_A Guanylate kinase, GMP k 95.6 0.0052 1.8E-07 51.2 2.4 23 216-238 5-27 (198)
158 3iij_A Coilin-interacting nucl 95.6 0.0058 2E-07 49.8 2.6 24 215-238 11-34 (180)
159 2jaq_A Deoxyguanosine kinase; 95.6 0.0066 2.3E-07 50.3 3.1 22 217-238 2-23 (205)
160 1fx0_B ATP synthase beta chain 95.5 0.046 1.6E-06 51.7 8.9 100 199-304 154-275 (498)
161 2cdn_A Adenylate kinase; phosp 95.5 0.0087 3E-07 49.7 3.7 25 214-238 19-43 (201)
162 1uj2_A Uridine-cytidine kinase 95.5 0.0082 2.8E-07 52.0 3.6 26 213-238 20-45 (252)
163 1xjc_A MOBB protein homolog; s 95.5 0.0075 2.6E-07 48.9 3.1 25 214-238 3-27 (169)
164 3kl4_A SRP54, signal recogniti 95.5 0.062 2.1E-06 50.3 9.7 26 213-238 95-120 (433)
165 3cm0_A Adenylate kinase; ATP-b 95.5 0.0092 3.1E-07 48.8 3.6 24 215-238 4-27 (186)
166 1jjv_A Dephospho-COA kinase; P 95.5 0.0082 2.8E-07 50.1 3.4 22 216-237 3-24 (206)
167 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0084 2.9E-07 52.2 3.5 24 215-238 4-27 (260)
168 2ewv_A Twitching motility prot 95.5 0.01 3.6E-07 54.6 4.3 109 215-338 136-247 (372)
169 1zuh_A Shikimate kinase; alpha 95.5 0.0077 2.6E-07 48.4 3.0 25 214-238 6-30 (168)
170 1aky_A Adenylate kinase; ATP:A 95.4 0.008 2.7E-07 50.8 3.2 24 215-238 4-27 (220)
171 2bbw_A Adenylate kinase 4, AK4 95.4 0.0079 2.7E-07 51.8 3.1 23 215-237 27-49 (246)
172 1znw_A Guanylate kinase, GMP k 95.4 0.0084 2.9E-07 50.2 3.1 24 215-238 20-43 (207)
173 2plr_A DTMP kinase, probable t 95.4 0.0098 3.3E-07 49.6 3.5 23 216-238 5-27 (213)
174 2bwj_A Adenylate kinase 5; pho 95.4 0.0086 2.9E-07 49.4 3.1 24 215-238 12-35 (199)
175 1via_A Shikimate kinase; struc 95.4 0.0082 2.8E-07 48.7 2.9 23 216-238 5-27 (175)
176 3ney_A 55 kDa erythrocyte memb 95.4 0.0092 3.2E-07 49.7 3.2 25 214-238 18-42 (197)
177 2hf9_A Probable hydrogenase ni 95.4 0.019 6.4E-07 48.5 5.2 25 214-238 37-61 (226)
178 2iyv_A Shikimate kinase, SK; t 95.3 0.0065 2.2E-07 49.6 2.2 23 216-238 3-25 (184)
179 2jeo_A Uridine-cytidine kinase 95.3 0.011 3.6E-07 51.0 3.7 25 214-238 24-48 (245)
180 2vli_A Antibiotic resistance p 95.3 0.0064 2.2E-07 49.5 2.1 24 215-238 5-28 (183)
181 3aez_A Pantothenate kinase; tr 95.3 0.01 3.5E-07 53.2 3.6 26 213-238 88-113 (312)
182 2z0h_A DTMP kinase, thymidylat 95.3 0.026 8.7E-07 46.4 5.7 22 217-238 2-23 (197)
183 1e6c_A Shikimate kinase; phosp 95.2 0.008 2.7E-07 48.5 2.4 23 216-238 3-25 (173)
184 2pbr_A DTMP kinase, thymidylat 95.2 0.0099 3.4E-07 48.8 3.1 22 217-238 2-23 (195)
185 1rj9_A FTSY, signal recognitio 95.2 0.011 3.7E-07 52.9 3.5 25 214-238 101-125 (304)
186 1nn5_A Similar to deoxythymidy 95.2 0.011 3.9E-07 49.3 3.5 24 215-238 9-32 (215)
187 2pt5_A Shikimate kinase, SK; a 95.2 0.01 3.5E-07 47.5 3.0 22 217-238 2-23 (168)
188 1zd8_A GTP:AMP phosphotransfer 95.2 0.011 3.6E-07 50.3 3.2 24 215-238 7-30 (227)
189 2ged_A SR-beta, signal recogni 95.2 0.018 6.1E-07 47.1 4.5 26 213-238 46-71 (193)
190 2wwf_A Thymidilate kinase, put 95.2 0.012 4.3E-07 49.0 3.6 25 214-238 9-33 (212)
191 3b9q_A Chloroplast SRP recepto 95.2 0.023 7.8E-07 50.7 5.5 26 213-238 98-123 (302)
192 1z6g_A Guanylate kinase; struc 95.2 0.0087 3E-07 50.7 2.6 24 215-238 23-46 (218)
193 1gtv_A TMK, thymidylate kinase 95.2 0.007 2.4E-07 50.7 1.9 22 217-238 2-23 (214)
194 1s96_A Guanylate kinase, GMP k 95.1 0.011 3.8E-07 50.1 3.2 25 214-238 15-39 (219)
195 1sq5_A Pantothenate kinase; P- 95.1 0.027 9.2E-07 50.3 5.8 25 214-238 79-103 (308)
196 2wsm_A Hydrogenase expression/ 95.1 0.016 5.6E-07 48.6 4.2 40 193-238 14-53 (221)
197 1htw_A HI0065; nucleotide-bind 95.1 0.015 5E-07 46.6 3.6 24 215-238 33-56 (158)
198 1ixz_A ATP-dependent metallopr 95.1 0.01 3.6E-07 51.2 2.9 21 218-238 52-72 (254)
199 2pez_A Bifunctional 3'-phospho 95.1 0.014 4.8E-07 47.5 3.5 25 214-238 4-28 (179)
200 4e22_A Cytidylate kinase; P-lo 95.1 0.012 4E-07 51.1 3.2 23 215-237 27-49 (252)
201 2f6r_A COA synthase, bifunctio 95.1 0.014 4.7E-07 51.5 3.7 25 213-237 73-97 (281)
202 2x8a_A Nuclear valosin-contain 95.1 0.01 3.6E-07 52.1 2.9 51 188-238 10-67 (274)
203 1tue_A Replication protein E1; 95.1 0.019 6.5E-07 48.0 4.2 37 197-238 45-81 (212)
204 2ck3_D ATP synthase subunit be 95.1 0.13 4.5E-06 48.4 10.4 100 199-304 142-262 (482)
205 1zak_A Adenylate kinase; ATP:A 95.1 0.011 3.7E-07 50.0 2.8 24 215-238 5-28 (222)
206 3cmu_A Protein RECA, recombina 95.0 0.04 1.4E-06 60.7 7.8 84 214-304 1426-1514(2050)
207 4a74_A DNA repair and recombin 95.0 0.014 4.8E-07 49.3 3.4 46 214-259 24-73 (231)
208 3e1s_A Exodeoxyribonuclease V, 95.0 0.041 1.4E-06 53.6 7.1 23 216-238 205-227 (574)
209 3fwy_A Light-independent proto 95.0 0.014 4.7E-07 52.4 3.5 25 213-237 46-70 (314)
210 4a1f_A DNAB helicase, replicat 95.0 0.066 2.3E-06 48.4 8.0 49 215-267 46-94 (338)
211 2yhs_A FTSY, cell division pro 95.0 0.088 3E-06 50.0 9.1 26 213-238 291-316 (503)
212 1um8_A ATP-dependent CLP prote 95.0 0.019 6.6E-07 52.7 4.6 24 215-238 72-95 (376)
213 3cf2_A TER ATPase, transitiona 95.0 0.049 1.7E-06 55.0 7.8 52 187-238 476-534 (806)
214 3tlx_A Adenylate kinase 2; str 95.0 0.016 5.3E-07 50.0 3.6 25 214-238 28-52 (243)
215 2og2_A Putative signal recogni 95.0 0.028 9.7E-07 51.3 5.5 26 213-238 155-180 (359)
216 2ehv_A Hypothetical protein PH 95.0 0.013 4.4E-07 50.2 3.1 23 215-237 30-52 (251)
217 3be4_A Adenylate kinase; malar 95.0 0.012 4.2E-07 49.5 2.9 24 215-238 5-28 (217)
218 2v54_A DTMP kinase, thymidylat 95.0 0.015 5.1E-07 48.2 3.4 24 215-238 4-27 (204)
219 2grj_A Dephospho-COA kinase; T 94.9 0.016 5.5E-07 48.0 3.4 26 213-238 10-35 (192)
220 3fb4_A Adenylate kinase; psych 94.9 0.014 4.9E-07 48.9 3.2 22 217-238 2-23 (216)
221 3l0o_A Transcription terminati 94.9 0.0079 2.7E-07 55.2 1.6 54 198-257 163-217 (427)
222 1m7g_A Adenylylsulfate kinase; 94.9 0.018 6.1E-07 48.3 3.7 24 215-238 25-48 (211)
223 2f1r_A Molybdopterin-guanine d 94.9 0.0094 3.2E-07 48.5 1.8 23 216-238 3-25 (171)
224 1vht_A Dephospho-COA kinase; s 94.9 0.018 6.2E-07 48.4 3.7 23 215-237 4-26 (218)
225 2ffh_A Protein (FFH); SRP54, s 94.8 0.088 3E-06 49.1 8.6 24 215-238 98-121 (425)
226 3dl0_A Adenylate kinase; phosp 94.8 0.016 5.4E-07 48.7 3.2 22 217-238 2-23 (216)
227 3tif_A Uncharacterized ABC tra 94.8 0.015 5.1E-07 49.9 2.9 53 287-339 155-210 (235)
228 2pcj_A ABC transporter, lipopr 94.8 0.016 5.3E-07 49.4 3.0 52 287-338 150-203 (224)
229 2onk_A Molybdate/tungstate ABC 94.8 0.016 5.6E-07 49.8 3.2 22 216-237 25-46 (240)
230 3hjn_A DTMP kinase, thymidylat 94.7 0.043 1.5E-06 45.6 5.6 85 217-304 2-90 (197)
231 1iy2_A ATP-dependent metallopr 94.7 0.015 5.2E-07 51.0 2.9 52 187-238 39-96 (278)
232 3lnc_A Guanylate kinase, GMP k 94.7 0.011 3.7E-07 50.4 1.9 22 215-236 27-48 (231)
233 2i3b_A HCR-ntpase, human cance 94.7 0.014 4.8E-07 48.3 2.5 23 217-239 3-25 (189)
234 2qe7_A ATP synthase subunit al 94.7 0.063 2.2E-06 50.8 7.2 97 199-304 151-263 (502)
235 2j37_W Signal recognition part 94.7 0.31 1.1E-05 46.5 12.1 42 197-238 80-124 (504)
236 3e70_C DPA, signal recognition 94.7 0.021 7.2E-07 51.5 3.8 25 214-238 128-152 (328)
237 1ls1_A Signal recognition part 94.6 0.094 3.2E-06 46.5 7.9 24 215-238 98-121 (295)
238 3b85_A Phosphate starvation-in 94.6 0.015 5.3E-07 48.8 2.6 23 216-238 23-45 (208)
239 1np6_A Molybdopterin-guanine d 94.6 0.02 6.9E-07 46.6 3.2 25 214-238 5-29 (174)
240 3llm_A ATP-dependent RNA helic 94.6 0.11 3.8E-06 44.2 8.0 90 216-306 77-187 (235)
241 3ake_A Cytidylate kinase; CMP 94.5 0.021 7.2E-07 47.4 3.2 22 217-238 4-25 (208)
242 1oix_A RAS-related protein RAB 94.5 0.028 9.6E-07 46.1 3.9 25 214-238 28-52 (191)
243 2cbz_A Multidrug resistance-as 94.5 0.019 6.5E-07 49.3 2.9 24 215-238 31-54 (237)
244 3gfo_A Cobalt import ATP-bindi 94.5 0.019 6.4E-07 50.5 2.9 56 286-341 152-210 (275)
245 2r9v_A ATP synthase subunit al 94.5 0.057 2E-06 51.2 6.3 97 199-304 164-276 (515)
246 1b0u_A Histidine permease; ABC 94.5 0.019 6.5E-07 50.1 2.9 23 215-237 32-54 (262)
247 1a7j_A Phosphoribulokinase; tr 94.5 0.012 4.2E-07 52.1 1.7 25 214-238 4-28 (290)
248 3r20_A Cytidylate kinase; stru 94.4 0.021 7.3E-07 48.8 3.1 24 215-238 9-32 (233)
249 1ak2_A Adenylate kinase isoenz 94.4 0.023 7.9E-07 48.4 3.4 25 214-238 15-39 (233)
250 1e4v_A Adenylate kinase; trans 94.4 0.024 8.1E-07 47.6 3.3 22 217-238 2-23 (214)
251 1g41_A Heat shock protein HSLU 94.4 0.033 1.1E-06 52.3 4.5 51 188-238 15-73 (444)
252 1ji0_A ABC transporter; ATP bi 94.4 0.021 7.1E-07 49.1 2.9 22 216-237 33-54 (240)
253 1g6h_A High-affinity branched- 94.4 0.021 7E-07 49.7 2.9 22 216-237 34-55 (257)
254 4g1u_C Hemin import ATP-bindin 94.4 0.021 7.1E-07 50.0 2.9 23 215-237 37-59 (266)
255 2d2e_A SUFC protein; ABC-ATPas 94.3 0.023 7.8E-07 49.2 3.1 22 216-237 30-51 (250)
256 1j8m_F SRP54, signal recogniti 94.3 0.13 4.5E-06 45.6 8.2 24 215-238 98-121 (297)
257 2xb4_A Adenylate kinase; ATP-b 94.3 0.024 8.1E-07 48.0 3.2 22 217-238 2-23 (223)
258 2vp4_A Deoxynucleoside kinase; 94.3 0.027 9.3E-07 47.9 3.6 26 213-238 18-43 (230)
259 3k1j_A LON protease, ATP-depen 94.3 0.03 1E-06 55.0 4.3 43 188-238 41-83 (604)
260 3p32_A Probable GTPase RV1496/ 94.3 0.048 1.7E-06 49.7 5.4 38 197-238 65-102 (355)
261 4eaq_A DTMP kinase, thymidylat 94.3 0.055 1.9E-06 46.0 5.4 26 214-239 25-50 (229)
262 2wji_A Ferrous iron transport 94.3 0.03 1E-06 44.7 3.5 23 216-238 4-26 (165)
263 2dyk_A GTP-binding protein; GT 94.3 0.029 1E-06 44.1 3.5 23 216-238 2-24 (161)
264 1yrb_A ATP(GTP)binding protein 94.3 0.031 1.1E-06 48.3 3.9 26 213-238 12-37 (262)
265 2olj_A Amino acid ABC transpor 94.3 0.022 7.6E-07 49.7 2.9 23 215-237 50-72 (263)
266 3nwj_A ATSK2; P loop, shikimat 94.3 0.019 6.6E-07 49.7 2.5 23 216-238 49-71 (250)
267 2pze_A Cystic fibrosis transme 94.3 0.023 7.8E-07 48.5 2.9 23 216-238 35-57 (229)
268 3d3q_A TRNA delta(2)-isopenten 94.2 0.026 9E-07 51.0 3.4 23 216-238 8-30 (340)
269 2zu0_C Probable ATP-dependent 94.2 0.025 8.4E-07 49.5 3.1 24 215-238 46-69 (267)
270 2ff7_A Alpha-hemolysin translo 94.2 0.023 7.9E-07 49.1 2.9 22 216-237 36-57 (247)
271 1mv5_A LMRA, multidrug resista 94.2 0.025 8.5E-07 48.7 3.1 23 215-237 28-50 (243)
272 1q57_A DNA primase/helicase; d 94.2 0.22 7.5E-06 47.6 10.1 51 214-267 241-291 (503)
273 1sgw_A Putative ABC transporte 94.2 0.019 6.6E-07 48.4 2.3 124 216-339 36-197 (214)
274 1vpl_A ABC transporter, ATP-bi 94.2 0.024 8.1E-07 49.3 2.9 23 215-237 41-63 (256)
275 2f9l_A RAB11B, member RAS onco 94.2 0.024 8.4E-07 46.7 2.9 24 215-238 5-28 (199)
276 2zej_A Dardarin, leucine-rich 94.2 0.022 7.5E-07 46.4 2.6 22 217-238 4-25 (184)
277 2dr3_A UPF0273 protein PH0284; 94.2 0.041 1.4E-06 46.9 4.4 39 215-255 23-61 (247)
278 2v3c_C SRP54, signal recogniti 94.1 0.038 1.3E-06 51.9 4.4 42 197-238 78-122 (432)
279 2ixe_A Antigen peptide transpo 94.1 0.024 8.3E-07 49.7 2.9 53 287-339 166-221 (271)
280 1ltq_A Polynucleotide kinase; 94.1 0.028 9.7E-07 49.7 3.4 22 216-237 3-24 (301)
281 2ghi_A Transport protein; mult 94.1 0.025 8.4E-07 49.3 2.9 23 216-238 47-69 (260)
282 3vr4_D V-type sodium ATPase su 94.1 0.049 1.7E-06 51.0 5.1 99 199-304 140-257 (465)
283 2qi9_C Vitamin B12 import ATP- 94.1 0.026 8.8E-07 48.9 2.9 23 216-238 27-49 (249)
284 3sop_A Neuronal-specific septi 94.1 0.029 9.8E-07 49.2 3.3 22 217-238 4-25 (270)
285 2nq2_C Hypothetical ABC transp 94.1 0.026 9E-07 48.9 3.0 23 216-238 32-54 (253)
286 3cmu_A Protein RECA, recombina 94.1 0.1 3.6E-06 57.5 8.1 85 214-305 382-471 (2050)
287 2yz2_A Putative ABC transporte 94.0 0.026 9E-07 49.3 2.9 23 215-237 33-55 (266)
288 3zvl_A Bifunctional polynucleo 94.0 0.029 1E-06 52.4 3.4 26 213-238 256-281 (416)
289 2ce2_X GTPase HRAS; signaling 94.0 0.031 1E-06 44.0 3.1 22 217-238 5-26 (166)
290 3bgw_A DNAB-like replicative h 94.0 0.26 9E-06 46.3 9.9 40 214-255 196-235 (444)
291 1zu4_A FTSY; GTPase, signal re 94.0 0.034 1.2E-06 50.0 3.6 25 214-238 104-128 (320)
292 2ihy_A ABC transporter, ATP-bi 94.0 0.027 9.3E-07 49.6 2.9 22 216-237 48-69 (279)
293 3crm_A TRNA delta(2)-isopenten 94.0 0.036 1.2E-06 49.7 3.7 23 216-238 6-28 (323)
294 2eyu_A Twitching motility prot 94.0 0.036 1.2E-06 48.2 3.7 24 215-238 25-48 (261)
295 2wjg_A FEOB, ferrous iron tran 94.0 0.039 1.3E-06 44.8 3.6 25 214-238 6-30 (188)
296 2v9p_A Replication protein E1; 94.0 0.031 1E-06 49.9 3.2 25 214-238 125-149 (305)
297 1z2a_A RAS-related protein RAB 94.0 0.04 1.4E-06 43.5 3.7 25 214-238 4-28 (168)
298 3cmw_A Protein RECA, recombina 93.9 0.095 3.3E-06 57.0 7.4 86 214-306 382-472 (1706)
299 3exa_A TRNA delta(2)-isopenten 93.9 0.038 1.3E-06 49.3 3.6 24 215-238 3-26 (322)
300 3foz_A TRNA delta(2)-isopenten 93.8 0.042 1.4E-06 48.9 3.9 25 214-238 9-33 (316)
301 3a8t_A Adenylate isopentenyltr 93.8 0.039 1.3E-06 49.7 3.7 24 215-238 40-63 (339)
302 1q3t_A Cytidylate kinase; nucl 93.8 0.036 1.2E-06 47.3 3.4 26 212-237 13-38 (236)
303 1nlf_A Regulatory protein REPA 93.8 0.034 1.2E-06 48.8 3.2 120 215-338 30-184 (279)
304 3ld9_A DTMP kinase, thymidylat 93.8 0.094 3.2E-06 44.4 5.8 57 213-269 19-75 (223)
305 3end_A Light-independent proto 93.8 0.037 1.3E-06 49.2 3.5 27 212-238 38-64 (307)
306 2r6a_A DNAB helicase, replicat 93.8 0.18 6.3E-06 47.5 8.5 89 214-305 202-323 (454)
307 4edh_A DTMP kinase, thymidylat 93.8 0.11 3.9E-06 43.6 6.3 25 215-239 6-30 (213)
308 2lkc_A Translation initiation 93.8 0.052 1.8E-06 43.4 4.1 25 214-238 7-31 (178)
309 2nzj_A GTP-binding protein REM 93.8 0.046 1.6E-06 43.6 3.7 24 215-238 4-27 (175)
310 3gqb_B V-type ATP synthase bet 93.8 0.035 1.2E-06 52.0 3.3 100 199-304 136-260 (464)
311 2aka_B Dynamin-1; fusion prote 93.7 0.085 2.9E-06 46.4 5.8 42 197-238 8-49 (299)
312 1cr0_A DNA primase/helicase; R 93.7 0.035 1.2E-06 49.1 3.2 39 215-254 35-73 (296)
313 2q6t_A DNAB replication FORK h 93.7 0.29 1E-05 45.9 9.7 51 214-267 199-249 (444)
314 1nij_A Hypothetical protein YJ 93.7 0.04 1.4E-06 49.4 3.6 25 214-238 3-27 (318)
315 3oaa_A ATP synthase subunit al 93.7 0.29 9.8E-06 46.3 9.3 97 199-304 151-263 (513)
316 1svm_A Large T antigen; AAA+ f 93.6 0.038 1.3E-06 50.8 3.3 25 214-238 168-192 (377)
317 2ck3_A ATP synthase subunit al 93.6 0.068 2.3E-06 50.7 5.0 101 199-304 151-271 (510)
318 3thx_A DNA mismatch repair pro 93.6 0.085 2.9E-06 54.3 6.2 117 214-340 661-790 (934)
319 3vkw_A Replicase large subunit 93.6 0.11 3.8E-06 48.6 6.4 27 211-237 157-183 (446)
320 2pjz_A Hypothetical protein ST 93.6 0.036 1.2E-06 48.3 2.9 22 216-237 31-52 (263)
321 1m7b_A RND3/RHOE small GTP-bin 93.6 0.053 1.8E-06 43.9 3.8 25 214-238 6-30 (184)
322 3lv8_A DTMP kinase, thymidylat 93.5 0.12 4E-06 44.2 6.0 52 215-267 27-78 (236)
323 3con_A GTPase NRAS; structural 93.5 0.04 1.4E-06 44.8 3.0 23 216-238 22-44 (190)
324 1z08_A RAS-related protein RAB 93.5 0.053 1.8E-06 42.9 3.6 25 214-238 5-29 (170)
325 2ocp_A DGK, deoxyguanosine kin 93.5 0.05 1.7E-06 46.5 3.6 24 215-238 2-25 (241)
326 1svi_A GTP-binding protein YSX 93.5 0.056 1.9E-06 44.1 3.8 25 214-238 22-46 (195)
327 3nh6_A ATP-binding cassette SU 93.4 0.03 1E-06 50.0 2.2 23 215-237 80-102 (306)
328 2gj8_A MNME, tRNA modification 93.4 0.045 1.5E-06 44.0 3.1 23 216-238 5-27 (172)
329 1ky3_A GTP-binding protein YPT 93.4 0.056 1.9E-06 43.3 3.7 25 214-238 7-31 (182)
330 1nrj_B SR-beta, signal recogni 93.4 0.049 1.7E-06 45.4 3.4 25 214-238 11-35 (218)
331 2erx_A GTP-binding protein DI- 93.4 0.044 1.5E-06 43.5 2.9 23 216-238 4-26 (172)
332 2fn4_A P23, RAS-related protei 93.4 0.064 2.2E-06 42.9 4.0 25 214-238 8-32 (181)
333 1fzq_A ADP-ribosylation factor 93.4 0.053 1.8E-06 43.9 3.4 25 214-238 15-39 (181)
334 1ek0_A Protein (GTP-binding pr 93.3 0.045 1.6E-06 43.3 3.0 23 216-238 4-26 (170)
335 1u8z_A RAS-related protein RAL 93.3 0.067 2.3E-06 42.1 4.0 24 215-238 4-27 (168)
336 2bbs_A Cystic fibrosis transme 93.3 0.043 1.5E-06 48.6 3.0 24 215-238 64-87 (290)
337 1kao_A RAP2A; GTP-binding prot 93.3 0.046 1.6E-06 43.0 3.0 23 216-238 4-26 (167)
338 3fvq_A Fe(3+) IONS import ATP- 93.3 0.045 1.5E-06 49.9 3.2 56 287-342 148-206 (359)
339 3pqc_A Probable GTP-binding pr 93.3 0.058 2E-06 43.8 3.7 25 214-238 22-46 (195)
340 1c1y_A RAS-related protein RAP 93.3 0.046 1.6E-06 43.1 3.0 23 216-238 4-26 (167)
341 4tmk_A Protein (thymidylate ki 93.3 0.13 4.3E-06 43.3 5.8 52 216-268 4-55 (213)
342 1z0j_A RAB-22, RAS-related pro 93.3 0.046 1.6E-06 43.3 3.0 24 215-238 6-29 (170)
343 1fx0_A ATP synthase alpha chai 93.3 0.06 2.1E-06 51.0 4.1 84 215-304 163-264 (507)
344 3q72_A GTP-binding protein RAD 93.3 0.045 1.5E-06 43.2 2.8 22 217-238 4-25 (166)
345 2c61_A A-type ATP synthase non 93.3 0.07 2.4E-06 50.2 4.5 101 199-304 141-258 (469)
346 2hxs_A RAB-26, RAS-related pro 93.3 0.077 2.6E-06 42.4 4.3 25 214-238 5-29 (178)
347 3kta_A Chromosome segregation 93.2 0.052 1.8E-06 44.0 3.2 22 216-237 27-48 (182)
348 1g16_A RAS-related protein SEC 93.2 0.05 1.7E-06 43.0 3.1 24 215-238 3-26 (170)
349 3ihw_A Centg3; RAS, centaurin, 93.2 0.049 1.7E-06 44.4 3.0 25 214-238 19-43 (184)
350 2www_A Methylmalonic aciduria 93.2 0.057 2E-06 49.1 3.7 24 214-237 73-96 (349)
351 2cxx_A Probable GTP-binding pr 93.2 0.05 1.7E-06 44.1 3.0 22 217-238 3-24 (190)
352 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.05 1.7E-06 43.5 3.0 25 214-238 6-30 (177)
353 3tui_C Methionine import ATP-b 93.1 0.049 1.7E-06 49.8 3.1 57 286-342 172-231 (366)
354 1r8s_A ADP-ribosylation factor 93.1 0.052 1.8E-06 42.8 2.9 21 218-238 3-23 (164)
355 1r2q_A RAS-related protein RAB 93.0 0.054 1.9E-06 42.8 3.0 24 215-238 6-29 (170)
356 1p5z_B DCK, deoxycytidine kina 93.0 0.039 1.3E-06 47.9 2.2 25 214-238 23-47 (263)
357 1m2o_B GTP-binding protein SAR 93.0 0.055 1.9E-06 44.2 3.1 23 216-238 24-46 (190)
358 2qmh_A HPR kinase/phosphorylas 93.0 0.06 2.1E-06 44.7 3.2 23 216-238 35-57 (205)
359 2qnr_A Septin-2, protein NEDD5 93.0 0.049 1.7E-06 48.5 2.9 21 217-237 20-40 (301)
360 2y8e_A RAB-protein 6, GH09086P 92.9 0.058 2E-06 43.1 3.1 23 216-238 15-37 (179)
361 1z47_A CYSA, putative ABC-tran 92.9 0.054 1.8E-06 49.3 3.1 127 216-342 42-213 (355)
362 1f6b_A SAR1; gtpases, N-termin 92.9 0.064 2.2E-06 44.2 3.3 23 216-238 26-48 (198)
363 2iwr_A Centaurin gamma 1; ANK 92.9 0.047 1.6E-06 43.8 2.5 24 215-238 7-30 (178)
364 2bme_A RAB4A, RAS-related prot 92.9 0.059 2E-06 43.5 3.1 25 214-238 9-33 (186)
365 1u0j_A DNA replication protein 92.9 0.11 3.7E-06 45.2 4.9 37 198-238 91-127 (267)
366 3q85_A GTP-binding protein REM 92.9 0.071 2.4E-06 42.2 3.5 22 216-237 3-24 (169)
367 2yv5_A YJEQ protein; hydrolase 92.9 0.08 2.7E-06 47.1 4.1 33 196-238 155-187 (302)
368 1z0f_A RAB14, member RAS oncog 92.9 0.077 2.6E-06 42.3 3.7 25 214-238 14-38 (179)
369 4dsu_A GTPase KRAS, isoform 2B 92.9 0.058 2E-06 43.6 3.0 24 215-238 4-27 (189)
370 1jr3_D DNA polymerase III, del 92.8 0.28 9.4E-06 44.2 7.8 96 215-333 18-115 (343)
371 1cp2_A CP2, nitrogenase iron p 92.8 0.066 2.3E-06 46.4 3.5 23 216-238 2-24 (269)
372 3t1o_A Gliding protein MGLA; G 92.8 0.058 2E-06 43.9 2.9 24 214-237 13-36 (198)
373 2oil_A CATX-8, RAS-related pro 92.8 0.08 2.7E-06 43.1 3.8 25 214-238 24-48 (193)
374 3rlf_A Maltose/maltodextrin im 92.8 0.057 2E-06 49.6 3.1 22 216-237 30-51 (381)
375 1upt_A ARL1, ADP-ribosylation 92.8 0.08 2.7E-06 41.9 3.7 25 214-238 6-30 (171)
376 3mfy_A V-type ATP synthase alp 92.8 0.27 9.2E-06 47.1 7.7 59 199-266 216-275 (588)
377 2qm8_A GTPase/ATPase; G protei 92.8 0.069 2.4E-06 48.3 3.6 24 214-237 54-77 (337)
378 3eph_A TRNA isopentenyltransfe 92.8 0.068 2.3E-06 49.4 3.5 23 216-238 3-25 (409)
379 3iev_A GTP-binding protein ERA 92.8 0.07 2.4E-06 47.6 3.6 28 211-238 6-33 (308)
380 1pui_A ENGB, probable GTP-bind 92.8 0.044 1.5E-06 45.4 2.1 25 214-238 25-49 (210)
381 2yyz_A Sugar ABC transporter, 92.8 0.059 2E-06 49.2 3.1 128 215-342 29-201 (359)
382 3v9p_A DTMP kinase, thymidylat 92.7 0.12 4E-06 44.0 4.8 25 215-239 25-49 (227)
383 3kkq_A RAS-related protein M-R 92.7 0.096 3.3E-06 42.1 4.1 25 214-238 17-41 (183)
384 3tw8_B RAS-related protein RAB 92.7 0.066 2.3E-06 42.8 3.1 25 214-238 8-32 (181)
385 3bc1_A RAS-related protein RAB 92.7 0.085 2.9E-06 42.7 3.9 25 214-238 10-34 (195)
386 2efe_B Small GTP-binding prote 92.7 0.063 2.2E-06 43.1 3.0 25 214-238 11-35 (181)
387 1lw7_A Transcriptional regulat 92.7 0.06 2.1E-06 49.2 3.1 24 215-238 170-193 (365)
388 2afh_E Nitrogenase iron protei 92.7 0.073 2.5E-06 46.8 3.6 24 215-238 2-25 (289)
389 2r8r_A Sensor protein; KDPD, P 92.7 0.086 2.9E-06 44.7 3.8 23 216-238 7-29 (228)
390 2ew1_A RAS-related protein RAB 92.7 0.084 2.9E-06 43.7 3.8 25 214-238 25-49 (201)
391 3c5c_A RAS-like protein 12; GD 92.7 0.082 2.8E-06 43.0 3.7 25 214-238 20-44 (187)
392 2bov_A RAla, RAS-related prote 92.7 0.09 3.1E-06 43.2 4.0 25 214-238 13-37 (206)
393 2it1_A 362AA long hypothetical 92.7 0.061 2.1E-06 49.1 3.1 128 215-342 29-201 (362)
394 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.087 3E-06 42.4 3.8 24 215-238 5-28 (186)
395 1g29_1 MALK, maltose transport 92.6 0.063 2.1E-06 49.3 3.1 22 216-237 30-51 (372)
396 3bwd_D RAC-like GTP-binding pr 92.6 0.065 2.2E-06 43.0 3.0 24 215-238 8-31 (182)
397 3t5g_A GTP-binding protein RHE 92.6 0.085 2.9E-06 42.4 3.7 25 214-238 5-29 (181)
398 2g6b_A RAS-related protein RAB 92.6 0.082 2.8E-06 42.3 3.6 25 214-238 9-33 (180)
399 2cjw_A GTP-binding protein GEM 92.6 0.064 2.2E-06 44.0 2.9 23 215-237 6-28 (192)
400 1v43_A Sugar-binding transport 92.5 0.065 2.2E-06 49.1 3.1 23 215-237 37-59 (372)
401 3k53_A Ferrous iron transport 92.5 0.086 2.9E-06 45.9 3.8 24 215-238 3-26 (271)
402 2fg5_A RAB-22B, RAS-related pr 92.5 0.07 2.4E-06 43.6 3.1 25 214-238 22-46 (192)
403 2atv_A RERG, RAS-like estrogen 92.5 0.068 2.3E-06 43.8 3.0 24 215-238 28-51 (196)
404 4bas_A ADP-ribosylation factor 92.5 0.073 2.5E-06 43.5 3.2 26 213-238 15-40 (199)
405 1gwn_A RHO-related GTP-binding 92.5 0.07 2.4E-06 44.3 3.1 25 214-238 27-51 (205)
406 2a9k_A RAS-related protein RAL 92.5 0.09 3.1E-06 42.3 3.7 25 214-238 17-41 (187)
407 1vg8_A RAS-related protein RAB 92.5 0.089 3E-06 43.3 3.7 25 214-238 7-31 (207)
408 3d31_A Sulfate/molybdate ABC t 92.5 0.054 1.8E-06 49.2 2.4 127 216-342 27-195 (348)
409 3cbq_A GTP-binding protein REM 92.5 0.074 2.5E-06 43.7 3.1 23 214-236 22-44 (195)
410 2p67_A LAO/AO transport system 92.5 0.081 2.8E-06 47.9 3.6 24 214-237 55-78 (341)
411 3dz8_A RAS-related protein RAB 92.4 0.07 2.4E-06 43.5 2.9 24 215-238 23-46 (191)
412 2fh5_B SR-beta, signal recogni 92.4 0.074 2.5E-06 44.2 3.1 25 214-238 6-30 (214)
413 3vr4_A V-type sodium ATPase ca 92.4 0.4 1.4E-05 46.1 8.4 58 199-265 221-279 (600)
414 2qu8_A Putative nucleolar GTP- 92.4 0.088 3E-06 44.4 3.6 25 214-238 28-52 (228)
415 3clv_A RAB5 protein, putative; 92.4 0.11 3.6E-06 42.4 4.0 25 214-238 6-30 (208)
416 3oes_A GTPase rhebl1; small GT 92.4 0.075 2.6E-06 43.7 3.1 25 214-238 23-47 (201)
417 2gf9_A RAS-related protein RAB 92.4 0.074 2.5E-06 43.2 3.0 25 214-238 21-45 (189)
418 1zbd_A Rabphilin-3A; G protein 92.4 0.073 2.5E-06 43.8 3.0 25 214-238 7-31 (203)
419 1jwy_B Dynamin A GTPase domain 92.3 0.16 5.5E-06 45.0 5.5 41 197-238 7-47 (315)
420 3tkl_A RAS-related protein RAB 92.3 0.13 4.4E-06 41.8 4.5 25 214-238 15-39 (196)
421 1moz_A ARL1, ADP-ribosylation 92.3 0.073 2.5E-06 42.8 2.9 25 214-238 17-41 (183)
422 3gmt_A Adenylate kinase; ssgci 92.3 0.074 2.5E-06 45.2 2.9 24 215-238 8-31 (230)
423 3llu_A RAS-related GTP-binding 92.3 0.075 2.6E-06 43.6 2.9 25 214-238 19-43 (196)
424 1zd9_A ADP-ribosylation factor 92.3 0.077 2.6E-06 43.2 3.0 25 214-238 21-45 (188)
425 1ega_A Protein (GTP-binding pr 92.3 0.082 2.8E-06 47.0 3.4 25 214-238 7-31 (301)
426 2a5j_A RAS-related protein RAB 92.3 0.12 4.2E-06 42.0 4.2 25 214-238 20-44 (191)
427 3cmw_A Protein RECA, recombina 92.2 0.24 8.2E-06 53.9 7.4 85 213-304 1429-1518(1706)
428 3reg_A RHO-like small GTPase; 92.2 0.078 2.7E-06 43.3 3.0 25 214-238 22-46 (194)
429 1ny5_A Transcriptional regulat 92.2 0.28 9.6E-06 45.2 7.1 45 190-238 139-183 (387)
430 2o52_A RAS-related protein RAB 92.2 0.096 3.3E-06 43.1 3.5 25 214-238 24-48 (200)
431 3gd7_A Fusion complex of cysti 92.2 0.079 2.7E-06 48.9 3.2 23 215-237 47-69 (390)
432 1oxx_K GLCV, glucose, ABC tran 92.2 0.05 1.7E-06 49.6 1.9 56 287-342 150-208 (353)
433 4akg_A Glutathione S-transfera 92.2 0.43 1.5E-05 54.4 9.6 80 216-306 1268-1347(2695)
434 2gf0_A GTP-binding protein DI- 92.2 0.11 3.9E-06 42.3 3.9 25 214-238 7-31 (199)
435 2axn_A 6-phosphofructo-2-kinas 92.2 0.09 3.1E-06 50.6 3.7 25 214-238 34-58 (520)
436 3lxx_A GTPase IMAP family memb 92.2 0.1 3.4E-06 44.5 3.7 25 214-238 28-52 (239)
437 2bcg_Y Protein YP2, GTP-bindin 92.1 0.083 2.8E-06 43.6 3.1 25 214-238 7-31 (206)
438 2h92_A Cytidylate kinase; ross 92.1 0.069 2.4E-06 44.7 2.6 22 216-237 4-25 (219)
439 1tq4_A IIGP1, interferon-induc 92.1 0.16 5.3E-06 47.3 5.2 23 215-237 69-91 (413)
440 1mky_A Probable GTP-binding pr 92.1 0.19 6.7E-06 47.1 5.9 47 192-238 152-203 (439)
441 2h17_A ADP-ribosylation factor 92.1 0.082 2.8E-06 42.6 3.0 25 214-238 20-44 (181)
442 2orw_A Thymidine kinase; TMTK, 92.1 0.089 3E-06 43.1 3.2 23 216-238 4-26 (184)
443 2obl_A ESCN; ATPase, hydrolase 92.1 0.086 2.9E-06 47.9 3.3 25 215-239 71-95 (347)
444 1u0l_A Probable GTPase ENGC; p 92.0 0.12 4.2E-06 45.8 4.2 34 196-238 159-192 (301)
445 1zj6_A ADP-ribosylation factor 92.0 0.12 4.2E-06 41.8 3.9 24 215-238 16-39 (187)
446 1x3s_A RAS-related protein RAB 92.0 0.085 2.9E-06 42.8 3.0 24 215-238 15-38 (195)
447 2q3h_A RAS homolog gene family 92.0 0.08 2.7E-06 43.4 2.8 25 214-238 19-43 (201)
448 1ksh_A ARF-like protein 2; sma 92.0 0.1 3.5E-06 42.1 3.4 26 214-239 17-42 (186)
449 2j1l_A RHO-related GTP-binding 92.0 0.084 2.9E-06 44.0 2.9 25 214-238 33-57 (214)
450 4b3f_X DNA-binding protein smu 91.9 0.22 7.5E-06 49.2 6.3 48 217-268 207-255 (646)
451 1w36_D RECD, exodeoxyribonucle 91.9 0.17 5.9E-06 49.6 5.5 41 216-256 165-206 (608)
452 2rcn_A Probable GTPase ENGC; Y 91.9 0.088 3E-06 48.0 3.1 23 216-238 216-238 (358)
453 2b6h_A ADP-ribosylation factor 91.9 0.11 3.7E-06 42.5 3.5 24 215-238 29-52 (192)
454 2gza_A Type IV secretion syste 91.9 0.077 2.6E-06 48.5 2.7 23 216-238 176-198 (361)
455 2fv8_A H6, RHO-related GTP-bin 91.9 0.093 3.2E-06 43.4 3.1 24 215-238 25-48 (207)
456 4dkx_A RAS-related protein RAB 91.8 0.091 3.1E-06 44.2 3.0 22 217-238 15-36 (216)
457 2atx_A Small GTP binding prote 91.8 0.095 3.3E-06 42.7 3.1 24 215-238 18-41 (194)
458 2p5s_A RAS and EF-hand domain 91.8 0.11 3.8E-06 42.6 3.4 25 214-238 27-51 (199)
459 2il1_A RAB12; G-protein, GDP, 91.8 0.077 2.6E-06 43.4 2.4 24 215-238 26-49 (192)
460 1z06_A RAS-related protein RAB 91.8 0.12 4.2E-06 41.8 3.7 25 214-238 19-43 (189)
461 2qag_B Septin-6, protein NEDD5 91.7 0.083 2.8E-06 49.3 2.8 23 216-238 43-65 (427)
462 3ch4_B Pmkase, phosphomevalona 91.7 0.14 4.8E-06 42.5 3.9 24 214-237 10-33 (202)
463 2hup_A RAS-related protein RAB 91.7 0.13 4.3E-06 42.4 3.7 25 214-238 28-52 (201)
464 4gzl_A RAS-related C3 botulinu 91.7 0.1 3.4E-06 43.2 3.1 24 215-238 30-53 (204)
465 3cph_A RAS-related protein SEC 91.7 0.097 3.3E-06 43.3 3.0 25 214-238 19-43 (213)
466 2gco_A H9, RHO-related GTP-bin 91.7 0.1 3.5E-06 43.0 3.1 24 215-238 25-48 (201)
467 2h57_A ADP-ribosylation factor 91.6 0.078 2.7E-06 43.1 2.3 25 215-239 21-45 (190)
468 1p9r_A General secretion pathw 91.6 0.19 6.6E-06 46.8 5.2 24 215-238 167-190 (418)
469 3f9v_A Minichromosome maintena 91.6 0.062 2.1E-06 52.6 1.9 22 217-238 329-350 (595)
470 3a1s_A Iron(II) transport prot 91.6 0.12 4E-06 44.8 3.5 25 214-238 4-28 (258)
471 2fz4_A DNA repair protein RAD2 91.6 0.43 1.5E-05 40.6 7.0 104 218-332 111-226 (237)
472 4hlc_A DTMP kinase, thymidylat 91.6 0.34 1.1E-05 40.4 6.2 50 216-268 3-52 (205)
473 3iby_A Ferrous iron transport 91.6 0.11 3.7E-06 45.0 3.3 23 216-238 2-24 (256)
474 2g3y_A GTP-binding protein GEM 91.6 0.14 4.6E-06 43.0 3.7 24 214-237 36-59 (211)
475 3fdi_A Uncharacterized protein 91.5 0.12 4E-06 43.0 3.3 24 215-238 6-29 (201)
476 2zts_A Putative uncharacterize 91.5 0.13 4.6E-06 43.6 3.8 50 214-266 29-78 (251)
477 3b1v_A Ferrous iron uptake tra 91.5 0.15 5E-06 44.6 4.0 24 215-238 3-26 (272)
478 1bif_A 6-phosphofructo-2-kinas 91.4 0.12 4E-06 49.1 3.5 24 215-238 39-62 (469)
479 2j0v_A RAC-like GTP-binding pr 91.4 0.17 5.7E-06 41.9 4.2 25 214-238 8-32 (212)
480 2pt7_A CAG-ALFA; ATPase, prote 91.4 0.089 3.1E-06 47.4 2.6 107 216-338 172-278 (330)
481 3q3j_B RHO-related GTP-binding 91.4 0.11 3.7E-06 43.4 3.0 24 215-238 27-50 (214)
482 3cr8_A Sulfate adenylyltranfer 91.4 0.093 3.2E-06 50.8 2.8 25 214-238 368-392 (552)
483 2fu5_C RAS-related protein RAB 91.3 0.062 2.1E-06 43.3 1.4 25 214-238 7-31 (183)
484 1m8p_A Sulfate adenylyltransfe 91.3 0.22 7.7E-06 48.4 5.5 26 213-238 394-419 (573)
485 4dhe_A Probable GTP-binding pr 91.2 0.087 3E-06 44.0 2.3 26 214-239 28-53 (223)
486 1h65_A Chloroplast outer envel 91.2 0.28 9.6E-06 42.6 5.6 25 214-238 38-62 (270)
487 1c9k_A COBU, adenosylcobinamid 91.2 0.21 7.2E-06 40.7 4.4 35 218-258 2-36 (180)
488 2qag_C Septin-7; cell cycle, c 91.1 0.1 3.4E-06 48.7 2.7 21 218-238 34-54 (418)
489 2npi_A Protein CLP1; CLP1-PCF1 91.1 0.099 3.4E-06 49.4 2.7 24 215-238 138-161 (460)
490 2f7s_A C25KG, RAS-related prot 91.1 0.11 3.8E-06 43.2 2.8 25 214-238 24-48 (217)
491 2xtp_A GTPase IMAP family memb 91.1 0.15 5.1E-06 43.9 3.7 25 214-238 21-45 (260)
492 1wf3_A GTP-binding protein; GT 91.0 0.15 5.3E-06 45.2 3.8 25 214-238 6-30 (301)
493 3ea0_A ATPase, para family; al 91.0 0.15 5.2E-06 43.3 3.6 25 214-238 3-28 (245)
494 1f2t_A RAD50 ABC-ATPase; DNA d 90.9 0.16 5.4E-06 40.0 3.3 22 216-237 24-45 (149)
495 2dpy_A FLII, flagellum-specifi 90.9 0.13 4.4E-06 48.3 3.3 24 215-238 157-180 (438)
496 3def_A T7I23.11 protein; chlor 90.9 0.32 1.1E-05 42.0 5.6 25 214-238 35-59 (262)
497 1g8f_A Sulfate adenylyltransfe 90.8 0.14 4.7E-06 49.0 3.4 26 214-239 394-419 (511)
498 1ypw_A Transitional endoplasmi 90.8 0.1 3.5E-06 53.0 2.6 51 188-238 477-534 (806)
499 1t9h_A YLOQ, probable GTPase E 90.8 0.07 2.4E-06 47.6 1.2 23 216-238 174-196 (307)
500 3euj_A Chromosome partition pr 90.7 0.13 4.6E-06 48.7 3.1 23 216-238 30-52 (483)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=7.4e-25 Score=215.04 Aligned_cols=149 Identities=22% Similarity=0.301 Sum_probs=122.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHh--ccccccccCceeEEEeCCCC--CHHHHHHHH
Q 048163 191 YGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYN--DKQVQDHFDLKAWTCVSDDF--DVFRLTKTI 266 (350)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 266 (350)
+||++++++|.++|.... ....++|+|+||||+||||||+++|+ +.++..+|+.++||++++.+ ++..++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997652 34579999999999999999999998 67899999999999999985 789999999
Q ss_pred HHHhCCCCC------CCCCCHHHHHHHHHHHcCCc-eEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCChhHHH
Q 048163 267 LISIVPDQN------VDNHNLNKLQEELKKKLSGK-IFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQEVAA 339 (350)
Q Consensus 267 l~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~ 339 (350)
+.+++.... ....+...+...+++.|+++ ||||||||||+.....|.. .+||+||||||++.|+.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 02335677889999999996 9999999999853223332 26999999999999999
Q ss_pred hcCCC-CceeCC
Q 048163 340 IMGTV-RAYQLK 350 (350)
Q Consensus 340 ~~~~~-~~~~l~ 350 (350)
.+++. .+|+|+
T Consensus 280 ~~~~~~~~~~l~ 291 (549)
T 2a5y_B 280 AASQTCEFIEVT 291 (549)
T ss_dssp GCCSCEEEEECC
T ss_pred HcCCCCeEEECC
Confidence 88643 456653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=4.8e-21 Score=193.88 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=110.1
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCc-eeEEEeCCCCCHHHHHHHHHH
Q 048163 190 VYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDDFDVFRLTKTILI 268 (350)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~il~ 268 (350)
.+||++++++|.++|...+ ..++|+|+||||+||||||+++|++.++..+|+. ++|+++++.++...++..|+.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999998643 3689999999999999999999998888899997 999999999998888888776
Q ss_pred HhCCC---CCCC-------CCCHHHHHHHHHHHc---CCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 269 SIVPD---QNVD-------NHNLNKLQEELKKKL---SGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 269 ~l~~~---~~~~-------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
.+... .... ..+.+.+...+++.| .+||+||||||||+. ..|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 53221 1101 113455666777765 789999999999984 566654 2 699999999999
Q ss_pred hHHHhcC
Q 048163 336 EVAAIMG 342 (350)
Q Consensus 336 ~va~~~~ 342 (350)
.++..++
T Consensus 276 ~Va~~l~ 282 (1221)
T 1vt4_I 276 QVTDFLS 282 (1221)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9986543
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.83 E-value=1.7e-20 Score=200.11 Aligned_cols=152 Identities=20% Similarity=0.335 Sum_probs=116.4
Q ss_pred ccccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcccc-cccc-CceeEEEeCCCCC--HH
Q 048163 185 VKEAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHF-DLKAWTCVSDDFD--VF 260 (350)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~ 260 (350)
.....|+||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 35789999999999999999999998543 4445 5677999988543 44
Q ss_pred HHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHcCCc--eEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 261 RLTKTILISIVPDQN---VDNHNLNKLQEELKKKLSGK--IFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 261 ~~~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
..+..++..+..... ....+.+.+...++..|.++ ||||||||||+. ..|..+ .+||+||+|||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 557777777766432 13467788999999999877 999999999874 344332 4689999999999
Q ss_pred hHHHh-cCCCCceeC
Q 048163 336 EVAAI-MGTVRAYQL 349 (350)
Q Consensus 336 ~va~~-~~~~~~~~l 349 (350)
.++.. ++....+++
T Consensus 268 ~~~~~~~~~~~~~~~ 282 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPV 282 (1249)
T ss_dssp TTTTTCCSCBCCEEC
T ss_pred HHHHhhcCCceEEEe
Confidence 99855 344455554
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=170.34 Aligned_cols=142 Identities=23% Similarity=0.331 Sum_probs=106.0
Q ss_pred ccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcccc-ccccC-ceeEEEeCCCCCHHHHHH
Q 048163 187 EAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHFD-LKAWTCVSDDFDVFRLTK 264 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~~ 264 (350)
...||||+.++++|.++|.... ...++|+|+||||+||||||..+|++..+ ..+|. .++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4679999999999999997532 35789999999999999999999998655 77894 7999999875 3333443
Q ss_pred H---HHHHhCCCC---CCCCCCHHHHHHHHHHHcCC--ceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCChh
Q 048163 265 T---ILISIVPDQ---NVDNHNLNKLQEELKKKLSG--KIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQE 336 (350)
Q Consensus 265 ~---il~~l~~~~---~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 336 (350)
. ++..+.... .....+...+...+...+.+ +++||||||+|+. ..+. .+ .+||+||+|||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcH
Confidence 3 344554211 11345677788888888865 7899999999863 2222 23 45899999999999
Q ss_pred HHHhcC
Q 048163 337 VAAIMG 342 (350)
Q Consensus 337 va~~~~ 342 (350)
++..++
T Consensus 269 ~~~~~~ 274 (591)
T 1z6t_A 269 VTDSVM 274 (591)
T ss_dssp GGTTCC
T ss_pred HHHhcC
Confidence 887654
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.72 E-value=7.7e-18 Score=129.66 Aligned_cols=79 Identities=25% Similarity=0.429 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccCChHHHHHHHHHHHHhhchhhhhhhHHHH
Q 048163 12 SVDLLVNKLASEGIRLFARQEQIQADLKKWKNMLVMIKAVLADAEEK--KTTDQSVKLWLGELQNLAYDVEDLLDEFQTE 89 (350)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~lr~~ay~~eD~lD~~~~~ 89 (350)
+++++++||.+++.++|.++.+|+++++.|+++|..|++||.+|+.+ +..++.++.|+++||++|||+|||||+|.|+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999987 5689999999999999999999999999997
Q ss_pred H
Q 048163 90 V 90 (350)
Q Consensus 90 ~ 90 (350)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=4.7e-12 Score=119.23 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=99.1
Q ss_pred ccccccchhhHHHHHHHH-hcCCCCCCCCeEEEEE--eecCCCchHHHHHHHHhccccc---cccC-ceeEEEeCCCCCH
Q 048163 187 EAKVYGRETEKKDVVELL-LRDDLSNDGEFSVIPI--IGMGGLGKTTLAQLVYNDKQVQ---DHFD-LKAWTCVSDDFDV 259 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~ 259 (350)
+..++||++++++|.++| .............+.| +|++|+|||+|++.+++..... ..|. ..+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321000012345666 9999999999999999863221 0122 3678888777788
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCC------cccHhhhcCccCCC---C--CCc
Q 048163 260 FRLTKTILISIVPDQNVDNHNLNKLQEELKKKLS--GKIFLLVLDDVWNEN------YNDWDRLRPPFEAG---A--PGS 326 (350)
Q Consensus 260 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 326 (350)
..++..++.+++...+....+...+...+.+.+. +++++|||||++... ...+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8999999999876543223445566666666664 679999999996531 12333333333211 1 344
Q ss_pred eEEEecCChhHH
Q 048163 327 KIIVTARNQEVA 338 (350)
Q Consensus 327 ~iivTtr~~~va 338 (350)
.+|+||+..++.
T Consensus 181 ~lI~~~~~~~~~ 192 (412)
T 1w5s_A 181 GFLLVASDVRAL 192 (412)
T ss_dssp EEEEEEEETHHH
T ss_pred EEEEEeccccHH
Confidence 588888766543
No 7
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=1.5e-10 Score=108.05 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=104.5
Q ss_pred ccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHH
Q 048163 187 EAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTI 266 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 266 (350)
+..++||+.+++++.+++........+..+.+.|+|++|+|||||++.++....... -...+|++++...+...++..+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 367999999999999988752110122335899999999999999999987632111 1246788888888888999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCCcccHhhhcCccCCCC----CCceEEEecCChhHHH
Q 048163 267 LISIVPDQNVDNHNLNKLQEELKKKLS--GKIFLLVLDDVWNENYNDWDRLRPPFEAGA----PGSKIIVTARNQEVAA 339 (350)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~va~ 339 (350)
+..++............+...+...+. +++.+||||+++..+......+...+.... .+..||++|+..+...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 998876543233455666666666553 668999999996654445555554443211 4678888888765443
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=3.7e-11 Score=112.04 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=97.8
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccc----cc--cCceeEEEeCCCC-CHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DH--FDLKAWTCVSDDF-DVF 260 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~--F~~~~wv~~~~~~-~~~ 260 (350)
..++||+++++.+.+++.... .......+.|+|++|+|||+||+.+++..... .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 779999999999998886521 11235689999999999999999999863211 11 3356788887767 888
Q ss_pred HHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCccc-HhhhcCccCCCCCCceEEEecCCh
Q 048163 261 RLTKTILISIVPDQ-NVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYND-WDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 261 ~~~~~il~~l~~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
.++..++..+.... .....+...+...+.+.+..++.+|||||++...... .+.+...|.....+..+|+||+..
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 89999998873322 2123445666777788887766699999995432111 122011222111677899998875
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.14 E-value=1.4e-10 Score=107.95 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=99.1
Q ss_pred ccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccc----cccCceeEEEeCCCCCHHHH
Q 048163 187 EAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVFRL 262 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~ 262 (350)
+..++||+.+++.+..++...- .......+.|+|++|+|||+||+.+++..... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 3779999999999999886531 12345688999999999999999998763211 10234678888888888999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHc--CCceEEEEEeCCCCCCcc--cHhhhcCccC--CC---CCCceEEEecC
Q 048163 263 TKTILISIVPDQNVDNHNLNKLQEELKKKL--SGKIFLLVLDDVWNENYN--DWDRLRPPFE--AG---APGSKIIVTAR 333 (350)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~--~~---~~gs~iivTtr 333 (350)
+..++.+++...+....+...+...+.+.+ .+++.+|||||++..... ..+.+...+. .. ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 999999997654433445666666777766 356899999999543211 2222322221 11 34567777777
Q ss_pred Ch
Q 048163 334 NQ 335 (350)
Q Consensus 334 ~~ 335 (350)
..
T Consensus 176 ~~ 177 (387)
T 2v1u_A 176 SL 177 (387)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=1.5e-10 Score=107.76 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=96.3
Q ss_pred ccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccc---cCceeEEEeCCCCCHHHHH
Q 048163 187 EAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH---FDLKAWTCVSDDFDVFRLT 263 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---F~~~~wv~~~~~~~~~~~~ 263 (350)
+..++||+++++.|.+++...- .......+.|+|++|+|||||++.+++.. ... -...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSKL--HKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHHH--HHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHHH--HHHhcCCceEEEEECCCCCCHHHHH
Confidence 4779999999999999887521 01245688999999999999999998853 222 2246788877767778888
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCC----cccHhhhcCccCC-CCCCceEEEecCChh
Q 048163 264 KTILISIVPDQNVDNHNLNKLQEELKKKLS--GKIFLLVLDDVWNEN----YNDWDRLRPPFEA-GAPGSKIIVTARNQE 336 (350)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 336 (350)
..++..++........+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..+
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888887765443233345555666666553 458999999995421 1223333222211 233557788887765
Q ss_pred H
Q 048163 337 V 337 (350)
Q Consensus 337 v 337 (350)
.
T Consensus 175 ~ 175 (386)
T 2qby_A 175 F 175 (386)
T ss_dssp G
T ss_pred h
Confidence 4
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.05 E-value=2.2e-10 Score=105.20 Aligned_cols=136 Identities=18% Similarity=0.288 Sum_probs=90.0
Q ss_pred cccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCC------CH
Q 048163 186 KEAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF------DV 259 (350)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~ 259 (350)
.+..|+||+++++.|.+++... +++.|+|++|+|||+|++++++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 3567999999999999988541 589999999999999999998752 1 6788775432 56
Q ss_pred HHHHHHHHHHhCC-----------------CCCCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCCCc-------ccHhh
Q 048163 260 FRLTKTILISIVP-----------------DQNVDNHNLNKLQEELKKKLSG-KIFLLVLDDVWNENY-------NDWDR 314 (350)
Q Consensus 260 ~~~~~~il~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~~ 314 (350)
..++..+...+.. .......+...+...+.+.... ++++|||||++.... ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6677766665532 0000124556666666665542 389999999955321 11222
Q ss_pred hcCccCCCCCCceEEEecCChhH
Q 048163 315 LRPPFEAGAPGSKIIVTARNQEV 337 (350)
Q Consensus 315 l~~~l~~~~~gs~iivTtr~~~v 337 (350)
+...+.. .++.++|+|++...+
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGL 176 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHH
Confidence 3222222 247789999888654
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.96 E-value=2.9e-09 Score=91.96 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=76.8
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
..++|++..++.|..++.... ....+.|+|++|+|||||++.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 468999999999999997643 2358899999999999999999875322111100 00000000 00110
Q ss_pred HHhCCC----CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCChh
Q 048163 268 ISIVPD----QNVDNHNLNKLQEELKKK----LSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQE 336 (350)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 336 (350)
...... ..........+...+... ..+++.+||+||++......++.+...+.....+..+|+||+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000000 000001111122212111 135689999999976555567777666655456778888887643
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=2.7e-09 Score=98.05 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=84.5
Q ss_pred cccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCC-----CCHH
Q 048163 186 KEAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-----FDVF 260 (350)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~ 260 (350)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++.+++... . ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHH
Confidence 35678999999999998 631 5899999999999999999987632 1 2578887642 3444
Q ss_pred HHHHHHHHHhC-------------CCC-----CC----------CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCc---
Q 048163 261 RLTKTILISIV-------------PDQ-----NV----------DNHNLNKLQEELKKKLSGKIFLLVLDDVWNENY--- 309 (350)
Q Consensus 261 ~~~~~il~~l~-------------~~~-----~~----------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--- 309 (350)
.++..+...+. ... +. .......+...+.+.-. ++++|||||++....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 55554443321 000 00 12345666666655433 499999999954211
Q ss_pred ccHhhhcCccCCCCCCceEEEecCChhH
Q 048163 310 NDWDRLRPPFEAGAPGSKIIVTARNQEV 337 (350)
Q Consensus 310 ~~~~~l~~~l~~~~~gs~iivTtr~~~v 337 (350)
.++..+...+.....+.++|+|++....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHH
Confidence 1222222222222246799999998764
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.91 E-value=7.3e-09 Score=88.27 Aligned_cols=126 Identities=16% Similarity=0.096 Sum_probs=77.5
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
..++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++.......-...+.++.+...+...+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 468999999999999986542 23489999999999999999987521111111233344444333322222211
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 268 ISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
..... .. ...+++.+||+||++......++.+...+.....++.+|+||+..
T Consensus 91 ~~~~~-~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 91 EFART-AP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp HHHTS-CC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHhcc-cC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 11111 00 012578999999997655455666666555445677888888765
No 15
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.5e-08 Score=89.13 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=80.7
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcccccc------ccCceeEEEeCCCCCHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD------HFDLKAWTCVSDDFDVFR 261 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~~~~~~~~~~ 261 (350)
..+.||+++.++|...|...- .......+.|+|++|+|||++++.|++...... .| ..+.+++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 347899999999998876532 123567889999999999999999998742211 12 357788888888899
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHH--cCCceEEEEEeCCCCC
Q 048163 262 LTKTILISIVPDQNVDNHNLNKLQEELKKK--LSGKIFLLVLDDVWNE 307 (350)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~ 307 (350)
++..|++++.............+...+... -.+++++++||++...
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 999999999765332223344444444432 2457899999999654
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=2.7e-08 Score=90.12 Aligned_cols=125 Identities=16% Similarity=0.220 Sum_probs=77.7
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccC-ceeEEEeCCCCCHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVFRLTKTI 266 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 266 (350)
..++|++..++.|..++.... .+.+.++|++|+|||++|+.+++.... ..+. ..++++.+...+. +.++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~-~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGI-DVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSH-HHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccCh-HHHHHH
Confidence 568999999999999986543 233899999999999999999875211 1111 2344444432232 222222
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHc-CCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 267 LISIVPDQNVDNHNLNKLQEELKKKL-SGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
+..+.... ..+ .+++.++|+||++......++.+...+.....++.+|+||...
T Consensus 93 ~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 93 IKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 22221000 011 3568999999997665556666666665445677888887664
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=1.1e-07 Score=86.19 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=75.6
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccC-ceeEEEeCCCCCHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVFRLTKTI 266 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 266 (350)
..++|++..++.+..++.... .+.+.++|++|+|||++|+.+++.... ..+. ..+.++.+...+. +.++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCch-HHHHHH
Confidence 458999999999999887643 334899999999999999999875211 1111 1233333321111 111111
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 267 LISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
+..+....+ ...+++.++|+||++......++.+...+.....++++|+||...
T Consensus 97 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 97 VKEFARTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp HHHHHHSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHHhhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 111100000 112568899999997665566777776665445677888887664
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.50 E-value=1.2e-07 Score=78.55 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=38.5
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++||+++++++.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999998653 2456789999999999999999875
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.41 E-value=8.3e-07 Score=82.04 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=75.5
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
..++|++..++.|...+.... ....+.|+|++|+|||++|+.+.+.......+.. .++........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHh
Confidence 458999999999999987643 2357889999999999999999875322111100 0000001111111
Q ss_pred HHh-------CCCCCCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 268 ISI-------VPDQNVDNHNLNKLQEELKKK-LSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 268 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
... .............+...+... ..+++.+||+||+...+...++.+...+.....+..+|++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 100 000000122233333222211 13567899999996655556677766665444566777776543
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.37 E-value=5.6e-07 Score=81.22 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=74.2
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccC-ceeEEEeCCCCCHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVFRLTKTI 266 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 266 (350)
..++|++..++.+..++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 45899999999988887543 233389999999999999999987521 11111 123334433211
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHH--c-CCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 267 LISIVPDQNVDNHNLNKLQEELKKK--L-SGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
..........+... + .+++.++|+|++........+.+...+.....++.+|+||...
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 11111111111111 1 2568899999996655556677777665545677888877654
No 21
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.25 E-value=7.4e-07 Score=73.54 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=38.3
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|++.+++.+.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999998653 2456789999999999999999875
No 22
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.23 E-value=2.5e-06 Score=68.02 Aligned_cols=114 Identities=13% Similarity=-0.041 Sum_probs=67.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 048163 189 KVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILI 268 (350)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 268 (350)
.++|+...+.++.+.+..-.. ...-|.|+|+.|+|||++|+.+++.... .... .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 478999899888887754321 1234789999999999999999875211 1112 23 666543221
Q ss_pred HhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCC
Q 048163 269 SIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 334 (350)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 334 (350)
..... .+... ..-.|+||++..........+...+.......+||.||..
T Consensus 66 ----------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 11111 2357899999766555555665555433445577776654
No 23
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.23 E-value=1.8e-06 Score=78.40 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=75.0
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+.+.. . ...+.++++. .. .+.++.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTT-CC-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccc-cC-HHHHHHHH
Confidence 568999999999999987543 34678889999999999999998753 1 1234445443 22 22222222
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-cccHhhhcCccCCCCCCceEEEecCChh
Q 048163 268 ISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNEN-YNDWDRLRPPFEAGAPGSKIIVTARNQE 336 (350)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~ 336 (350)
........ +.+++.+|++||+.... ....+.+...+.....+.++|+||....
T Consensus 94 ~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 94 TNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred HHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 22111000 12478899999996654 4455555555533234567777776543
No 24
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.19 E-value=2.3e-06 Score=70.74 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=65.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCC
Q 048163 193 RETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVP 272 (350)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 272 (350)
....++.+.+++..-. ......+.|+|+.|+|||||++.++........+ .++++ +..+++..+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 3344555555554322 1234689999999999999999998763212222 22333 344555554443322
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHh--hhcCccCC-CCCCceEEEecCCh
Q 048163 273 DQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWD--RLRPPFEA-GAPGSKIIVTARNQ 335 (350)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 335 (350)
... . .....+. +.-+|||||++....+.|. .+...+.. ...|..+|+||...
T Consensus 89 ~~~---~---~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKD---T---KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCC---S---HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chH---H---HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 1 2222222 4568999999743333443 23332321 12467888888653
No 25
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.12 E-value=4.3e-06 Score=70.36 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=62.8
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 048163 196 EKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQN 275 (350)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 275 (350)
.++.+.+++..... ......+.|+|++|+|||+||+.+++.. .......++++++ +++..+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555666654421 1122678999999999999999999863 2233445666543 444444433211
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhh--hcC-ccCCC-CCCceEEEecCC
Q 048163 276 VDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDR--LRP-PFEAG-APGSKIIVTARN 334 (350)
Q Consensus 276 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 334 (350)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 122333333332 2399999996643333332 221 12111 235578887774
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=4.1e-06 Score=76.73 Aligned_cols=135 Identities=12% Similarity=0.085 Sum_probs=74.1
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccC-ceeEEEeCCCCCHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVFRLTKTI 266 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 266 (350)
..++|++..++.+..++.... ...+.++|++|+||||+|+.+.........+. ..+.++.+...... .+++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHH
Confidence 568999999999999886542 22389999999999999999987532111122 12333444322322 22222
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCC
Q 048163 267 LISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 334 (350)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 334 (350)
+............... ....-.+++-+|++|++........+.+...+.......++|++|..
T Consensus 110 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHD-----LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp HHHHHHSCCCCCCTTH-----HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHhhhcccccchhh-----cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 2221111100100000 01111245679999999655544555666555444445677776644
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.00 E-value=1.6e-05 Score=71.43 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=68.7
Q ss_pred ccccchhhHHHHHHHHhcC---------CCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCH
Q 048163 189 KVYGRETEKKDVVELLLRD---------DLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 259 (350)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 259 (350)
.++|.+..++.|.+++... ..........+.|+|++|+|||+||+.+.+...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4688888887777655421 0001234567899999999999999988775322222211223333210
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC---------CcccHhhhcCccCCCCCCceEEE
Q 048163 260 FRLTKTILISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNE---------NYNDWDRLRPPFEAGAPGSKIIV 330 (350)
Q Consensus 260 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiv 330 (350)
.+.... .......+...+... +..+|+||++... .....+.+...+.....+..||+
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 111100 011112222222222 3459999999632 33344555555544455667888
Q ss_pred ecCCh
Q 048163 331 TARNQ 335 (350)
Q Consensus 331 Ttr~~ 335 (350)
||...
T Consensus 175 ~~~~~ 179 (309)
T 3syl_A 175 AGYAD 179 (309)
T ss_dssp EECHH
T ss_pred eCChH
Confidence 87654
No 28
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.97 E-value=4e-06 Score=75.87 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|++..+..+..++..... .......+.|+|++|+|||+||+.+++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 5689999998888887753210 0112356889999999999999999875
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.97 E-value=8.1e-06 Score=72.49 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=38.9
Q ss_pred ccccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLRDDL-------SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-..++|.+..+++|.+.+...-. .+......+.|+|++|+|||+||+.+++.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999887743200 00123466899999999999999999875
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.95 E-value=1.3e-05 Score=76.03 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=58.4
Q ss_pred cccccchhhH---HHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHH
Q 048163 188 AKVYGRETEK---KDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTK 264 (350)
Q Consensus 188 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 264 (350)
..++|.+..+ ..|...+... ....+.|+|++|+||||||+.+.+.. ...| +.++.......-++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~--~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYA--NADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHT--TCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHh--CCCe-----EEEEeccCCHHHHH
Confidence 5678888777 6676766554 34789999999999999999998852 2222 22222111111112
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCC
Q 048163 265 TILISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEA 321 (350)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 321 (350)
.++.. .......+++.+|+||++........+.+...+..
T Consensus 93 ~~~~~-----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~ 132 (447)
T 3pvs_A 93 EAIER-----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132 (447)
T ss_dssp HHHHH-----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT
T ss_pred HHHHH-----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc
Confidence 22211 01111246788999999977655555555555543
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=2.9e-05 Score=71.14 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=35.0
Q ss_pred cccccchhhHHHHHHHH-hcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELL-LRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+...+.+..++ .... ... +.|+|+.|+||||+++.+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHH
Confidence 45789988888888877 3322 223 899999999999999998763
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.90 E-value=3.8e-05 Score=67.08 Aligned_cols=51 Identities=25% Similarity=0.231 Sum_probs=35.1
Q ss_pred cccccchhhHHHHHHHHh---cCCC---CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLL---RDDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.+..++.|.+++. .... .+......+.|+|++|+|||++|+.+++.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 467888877776665542 2211 01133466889999999999999999885
No 33
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=4.8e-05 Score=68.38 Aligned_cols=119 Identities=8% Similarity=-0.066 Sum_probs=73.3
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccc-cccccCceeEEEeCC-CCCHHHHHHHHHHHh
Q 048163 193 RETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSD-DFDVFRLTKTILISI 270 (350)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l 270 (350)
-++.++.|...+... +.+...++|+.|+|||++|+.+.+... ....+....+++.+. ..++. -.++++..+
T Consensus 2 ~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id-~ir~li~~~ 74 (305)
T 2gno_A 2 AKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTIKDFL 74 (305)
T ss_dssp --CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH-HHHHHHHHH
Confidence 345566666666433 257889999999999999999976411 111122335555443 23332 234455554
Q ss_pred CCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 271 VPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
..... .+++-++|+|++...+....+.+...+....+.+.+|++|.+.
T Consensus 75 ~~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 75 NYSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp TSCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred hhccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 32221 2467889999997776677888888776555677777776543
No 34
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.88 E-value=5.9e-06 Score=65.63 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=32.9
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|+...+.++.+.+..... ...-|.|+|+.|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3578888888888887754211 1234779999999999999998774
No 35
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=2e-05 Score=72.03 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=67.6
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccC-ceeEEEeCCCCCHHHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVFRLTKTI 266 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 266 (350)
..++|.+..++.|...+.... .+.+.++|+.|+||||+|+.+..... ...+. ...-++.+...+... .+++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDV-VRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHH-HHHH
Confidence 456788888888888776542 23388999999999999999987521 11111 112222222112211 1111
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCC
Q 048163 267 LISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 334 (350)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 334 (350)
+..+.... ..+.+.+-++|+|++...+....+.+...+......+.+|++|..
T Consensus 97 i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 97 IKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp HHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 11111000 001234678899999655545566666655433445666666544
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.86 E-value=7.6e-05 Score=67.99 Aligned_cols=118 Identities=12% Similarity=0.073 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcccccc--------------------ccCceeEEEe
Q 048163 194 ETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD--------------------HFDLKAWTCV 253 (350)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~ 253 (350)
++..+.+...+.... -.+.+.++|+.|+|||++|+.+.....-.. |++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 345566777665443 346789999999999999999986521111 111 122222
Q ss_pred C---CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEE
Q 048163 254 S---DDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV 330 (350)
Q Consensus 254 ~---~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 330 (350)
. ....+. ..+++...+.... ..+++-++|+|++...+....+.+...+.....++.+|+
T Consensus 82 ~~~~~~~~i~-~ir~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EKGKNTLGVD-AVREVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CTTCSSBCHH-HHHHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cccCCCCCHH-HHHHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 1 111111 1222222221111 125678999999976665667777777765455677777
Q ss_pred ecCCh
Q 048163 331 TARNQ 335 (350)
Q Consensus 331 Ttr~~ 335 (350)
+|.+.
T Consensus 144 ~t~~~ 148 (334)
T 1a5t_A 144 ATREP 148 (334)
T ss_dssp EESCG
T ss_pred EeCCh
Confidence 76654
No 37
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.86 E-value=8.4e-06 Score=65.28 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=56.5
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKLSG 294 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (350)
-..+.|+|+.|+|||||++.++...... . ...+++........ ..+ .
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~~~~~------------------------------~~~-~ 82 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAASMPLT------------------------------DAA-F 82 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTTSCCC------------------------------GGG-G
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHHhhHH------------------------------HHH-h
Confidence 3588999999999999999998863221 1 12556555432211 111 2
Q ss_pred ceEEEEEeCCCCCCcccHhhhcCccCC-CCCCce-EEEecCC--------hhHHHhcCCCCcee
Q 048163 295 KIFLLVLDDVWNENYNDWDRLRPPFEA-GAPGSK-IIVTARN--------QEVAAIMGTVRAYQ 348 (350)
Q Consensus 295 kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~-iivTtr~--------~~va~~~~~~~~~~ 348 (350)
+.-+|||||+........+.+...+.. ...|.. ||+||+. +++++.+.....+.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 456889999965432222333333221 123444 8888874 34555554443333
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.82 E-value=3.2e-05 Score=73.26 Aligned_cols=102 Identities=24% Similarity=0.273 Sum_probs=59.1
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccC--ceeEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD--LKAWTCVSDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKL 292 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (350)
...+.|+|++|+||||||+.+++.. ...|. ..+++++. ++..++...+... ... .+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------~~~----~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITSE------KFLNDLVDSMKEG------KLN----EFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEHH------HHHHHHHHHHHTT------CHH----HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeHH------HHHHHHHHHHHcc------cHH----HHHHHh
Confidence 6779999999999999999999853 22221 23444433 3444444444321 111 233344
Q ss_pred CCceEEEEEeCCCCCCc--ccHhhhcCccCC-CCCCceEEEecCC
Q 048163 293 SGKIFLLVLDDVWNENY--NDWDRLRPPFEA-GAPGSKIIVTARN 334 (350)
Q Consensus 293 ~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~ 334 (350)
..+.-+|+|||+..... ...+.+...+.. ...|..||+||.+
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44677999999954322 122334333311 2357788888876
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.82 E-value=3.4e-06 Score=72.61 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=38.5
Q ss_pred cccccc---hhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCC
Q 048163 188 AKVYGR---ETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 255 (350)
Q Consensus 188 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 255 (350)
..++|. +..++.+..++... ....+.|+|++|+|||+||+.+++... .......|++++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHH
Confidence 345653 24455555555432 346889999999999999999987532 2233456666654
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.76 E-value=5.9e-05 Score=69.42 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=35.9
Q ss_pred cccccchhhHHH---HHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcc
Q 048163 188 AKVYGRETEKKD---VVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999988766 444444332 124688999999999999999998863
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.75 E-value=4.3e-05 Score=69.53 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=39.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-..++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35689999999999888865310 0123456899999999999999999875
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=5.7e-05 Score=73.03 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=62.7
Q ss_pred cccccchhhHHHHHHHHhcCC-----------CCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCC
Q 048163 188 AKVYGRETEKKDVVELLLRDD-----------LSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 256 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 256 (350)
.+++|++..++.|.+++.... ..+.+..+.+.|+|++|+|||++|+.+++.. .+ ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 568999999999999987511 0011245789999999999999999998863 12 2344555554
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC
Q 048163 257 FDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNE 307 (350)
Q Consensus 257 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 307 (350)
.+. .++...+........ -..-...... .....+++.+|+||++...
T Consensus 114 ~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l 160 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGM 160 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGC
T ss_pred chH-HHHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCcc
Confidence 443 233333332211110 0000000000 0012357889999999543
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.73 E-value=6.9e-05 Score=67.22 Aligned_cols=123 Identities=13% Similarity=0.198 Sum_probs=66.7
Q ss_pred cccccchhhHHHHHHHHhcCC---CCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTK 264 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 264 (350)
..++|.+..++.+...+.... .........+.++|++|+|||++|+.++... ...-...+.++++...... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHH
Confidence 346788888888877776431 0012234689999999999999999998752 1111234555655433211 112
Q ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCcc
Q 048163 265 TILISIVPDQNV-DNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPF 319 (350)
Q Consensus 265 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l 319 (350)
.++ +..... .......+...+.. ....+|+||++.......++.+...+
T Consensus 94 ~l~---g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 94 RLI---GAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HHH---CCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred Hhc---CCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 221 111110 11111222233322 34579999999665555555555544
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.72 E-value=3.4e-05 Score=68.08 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 189 KVYGRETEKKDVVE-------LLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 189 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++|....+++++. .+... .......+.|+|++|+|||+||+.+++.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45676666555555 33221 1345688999999999999999999885
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.67 E-value=4.6e-05 Score=66.88 Aligned_cols=47 Identities=21% Similarity=0.163 Sum_probs=33.6
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|....+..+.+.+..... ....+.|+|+.|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3478998888888876654221 1246789999999999999999875
No 46
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.67 E-value=0.00018 Score=65.07 Aligned_cols=51 Identities=29% Similarity=0.298 Sum_probs=38.3
Q ss_pred cccccchhhHHHHHHHHhcC---C---CCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRD---D---LSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.+..++.|.+.+... + .......+.+.++|++|+|||+||+.+++.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999888877311 0 001223567899999999999999999885
No 47
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.62 E-value=0.0001 Score=66.20 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=36.4
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|....+.++.+.+..... ....|.|+|+.|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3578998888888887765321 2345779999999999999999874
No 48
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.59 E-value=0.00029 Score=59.55 Aligned_cols=87 Identities=21% Similarity=0.106 Sum_probs=54.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCC-----------CCCCCCCCHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVP-----------DQNVDNHNLN 282 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~~~~~~~~~~ 282 (350)
.-.++.|+|++|+|||||+..+.. ..-..++|++....++...+.. +....+. ..........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999987 1224578888776556544432 3333221 1111112223
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC
Q 048163 283 KLQEELKKKLSGKIFLLVLDDVWN 306 (350)
Q Consensus 283 ~~~~~l~~~l~~kr~LlVlDdv~~ 306 (350)
.....+...+..+.-+||+|.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 345555556554577999999944
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.58 E-value=0.00016 Score=68.92 Aligned_cols=45 Identities=33% Similarity=0.446 Sum_probs=38.1
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|++.+++++++.|.... ..-+.|+|++|+|||+||+.++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997643 345679999999999999999875
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.57 E-value=0.00054 Score=69.39 Aligned_cols=45 Identities=27% Similarity=0.385 Sum_probs=38.3
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++||+.+++++++.|.... ...+.|+|++|+|||++|+.+...
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999997543 355689999999999999999875
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.56 E-value=8.8e-05 Score=76.18 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=38.1
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++||++++.++++.|.... ...+.++|++|+|||+||+.+...
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999997643 344689999999999999999875
No 52
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.50 E-value=0.00015 Score=65.64 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=54.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKLS 293 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (350)
....+.|+|++|+||||||+.+++..... -...+++++ .++...+...+.. ...... ...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~------~~~~~~----~~~~~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKK------GTINEF----RNMYK 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHH------TCHHHH----HHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHc------CcHHHH----HHHhc
Confidence 35678999999999999999998853211 122344443 3334444433321 112222 22222
Q ss_pred CceEEEEEeCCCCCCc--ccHhhhcCccCC-CCCCceEEEecCC
Q 048163 294 GKIFLLVLDDVWNENY--NDWDRLRPPFEA-GAPGSKIIVTARN 334 (350)
Q Consensus 294 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~ 334 (350)
+..+|+|||+..... .....+...+.. ...|..||+||.+
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 367999999954321 112233333211 1245678887753
No 53
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.47 E-value=9.4e-05 Score=66.36 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=46.1
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV--SDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKL 292 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (350)
.+++.|+|++|+|||+||.++... ....++|++. .+..+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 356789999999999999999874 2224567777 333110 1144555565566666
Q ss_pred CCceEEEEEeCCCC
Q 048163 293 SGKIFLLVLDDVWN 306 (350)
Q Consensus 293 ~~kr~LlVlDdv~~ 306 (350)
...+ |||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999954
No 54
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.44 E-value=0.00039 Score=63.83 Aligned_cols=51 Identities=31% Similarity=0.345 Sum_probs=37.4
Q ss_pred cccccchhhHHHHHHHHhcC----CC--CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRD----DL--SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.+..++.|.+.+..+ .. ......+.+.|+|++|+|||+||+.+++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46889999998888876321 00 01123456889999999999999999986
No 55
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.44 E-value=0.00045 Score=61.51 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=37.9
Q ss_pred cccccchhhHHHHHHHHhcCCC----C--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDL----S--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~----~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..++.|.+.+..+.. . -......+.|+|++|+|||++|+.++..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5689999999988887643100 0 0113467899999999999999999875
No 56
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.43 E-value=0.001 Score=60.19 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=37.2
Q ss_pred cccccchhhHHHHHHHHhc----CCC--CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLR----DDL--SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.+..++.|.+.+.. ++. ......+.+.|+|++|+|||+||+.+++.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 5678988888888776632 110 01223478899999999999999999985
No 57
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.43 E-value=0.0019 Score=61.11 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=37.9
Q ss_pred cccccchhhHHHHHHHHhcC----CCC--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRD----DLS--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.+..++.|.+.+..+ ... .....+.+.|+|++|+|||+||+.+++.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56889998888888876321 100 0123478899999999999999999985
No 58
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=0.00045 Score=61.85 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=37.5
Q ss_pred cccccchhhHHHHHHHHhcCC-------CCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDD-------LSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.+..++.|.+++...- ..+-.....+.|+|++|+|||+||+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 458899988888887764310 001123567899999999999999999985
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=0.00057 Score=69.19 Aligned_cols=45 Identities=33% Similarity=0.446 Sum_probs=38.3
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|++.+++++++.|.... ..-+.++|++|+|||++|+.+...
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997643 344789999999999999999875
No 60
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.31 E-value=0.00018 Score=64.74 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 195 TEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+.+.+++..... .....+.|+|+.|+|||+||..+++.
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344455566654321 12467889999999999999999985
No 61
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.001 Score=57.89 Aligned_cols=51 Identities=27% Similarity=0.327 Sum_probs=34.1
Q ss_pred cccccchhhHHHHHHHH---hcCCCC---CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELL---LRDDLS---NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.+..++.+.+.+ ...... +....+-+.|+|++|+||||||+.+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 56788887776665543 222100 1112345889999999999999999875
No 62
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.25 E-value=0.00052 Score=62.99 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=38.1
Q ss_pred cccccchhhHHHHHHHHhcC----CCC--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRD----DLS--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..++.|.+.+... ... .....+.+.|+|++|+|||+||+.+++.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999888877431 100 0123567899999999999999999875
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.19 E-value=0.00032 Score=67.14 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=37.9
Q ss_pred cccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDL-------SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..+++|.+++...-. .+......+.|+|++|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 4589999999998887753200 00123456899999999999999999875
No 64
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.19 E-value=0.00087 Score=62.23 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=38.4
Q ss_pred ccccccchhhHHHHHHHHhcC----CCC--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLRD----DLS--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~----~~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-..++|.+..++.|.+++... ... .......+.|+|++|+|||+||+.+++.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999988877321 000 0122467899999999999999999875
No 65
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.0017 Score=59.29 Aligned_cols=86 Identities=21% Similarity=0.204 Sum_probs=56.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQN----VDNHNLNKLQEELK 289 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 289 (350)
.-.++.|.|++|+|||||+.++..... ..-..++|++....++.. .++.++.... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999987522 222357888887776644 3444444321 12445666666666
Q ss_pred HHcC-CceEEEEEeCCCC
Q 048163 290 KKLS-GKIFLLVLDDVWN 306 (350)
Q Consensus 290 ~~l~-~kr~LlVlDdv~~ 306 (350)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5553 4556899999843
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.07 E-value=0.0004 Score=70.37 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=72.2
Q ss_pred cccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTK 264 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 264 (350)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+.. ...-...+.++++.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccc-----
Confidence 4578999988888887764321 012234479999999999999999998752 112223455565542210
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCC-----------CCCceEEEecC
Q 048163 265 TILISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAG-----------APGSKIIVTAR 333 (350)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr 333 (350)
.. .. ...+...++. ....+|+||++.......++.+...+..+ .....||+||.
T Consensus 564 ---------~~-~~--~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 ---------HS-TS--GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---------CC-CC-----CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ---------cc-cc--cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 00 1111122222 23458999999766655566655544321 23457888887
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.04 E-value=0.0016 Score=63.23 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.++-...+.+.+.-...........+.++|++|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456788777766655433211001124568999999999999999999875
No 68
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0013 Score=61.53 Aligned_cols=52 Identities=27% Similarity=0.244 Sum_probs=38.1
Q ss_pred ccccccchhhHHHHHHHHhc----CC---CCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLR----DD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.++.|.++.++.|.+.+.- ++ ..+-...+-+.++||+|+|||+||+.+++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35678888888877775532 10 002345678999999999999999999986
No 69
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0014 Score=61.48 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=37.7
Q ss_pred ccccccchhhHHHHHHHHhc----CCC---CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLR----DDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.++.|.++.++.|.+.+.- ++. .+-...+-|.++||+|+|||+||+.+++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35677888777777665532 110 02345688999999999999999999986
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.98 E-value=0.00063 Score=69.84 Aligned_cols=137 Identities=15% Similarity=0.226 Sum_probs=72.5
Q ss_pred cccccchhhHHHHHHHHhcCC---CCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTK 264 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 264 (350)
..++|.+..++.+...+.... .........+.|+|+.|+|||++|+.+.+... ..-...+.++++...... .
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~-~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-A-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSG-G--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchh-H--
Confidence 357899988888887775421 00122346889999999999999999987521 111123445555432210 0
Q ss_pred HHHHHhCCCCCC--CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCC-----------CCceEEEe
Q 048163 265 TILISIVPDQNV--DNHNLNKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGA-----------PGSKIIVT 331 (350)
Q Consensus 265 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 331 (350)
...+....+. .......+...+.. ...-+|+||++.......++.+...+..+. .+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0111100000 00001122223332 234689999997666556666666554321 24457777
Q ss_pred cCC
Q 048163 332 ARN 334 (350)
Q Consensus 332 tr~ 334 (350)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 765
No 71
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.96 E-value=0.0035 Score=56.01 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=55.8
Q ss_pred EEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHH-HHHHHHH
Q 048163 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKL-QEELKKK 291 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~-~~~l~~~ 291 (350)
++-|.|++|+|||||+.++.........-..++|++..+.++.. .+++++..... ...+.++. .+.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999987653211112468999998887753 35666654321 23455555 4333332
Q ss_pred --c-CCceEEEEEeCCCC
Q 048163 292 --L-SGKIFLLVLDDVWN 306 (350)
Q Consensus 292 --l-~~kr~LlVlDdv~~ 306 (350)
+ +++.-|||+|.|-.
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 3 45778999999943
No 72
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.95 E-value=0.0026 Score=57.96 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=56.6
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhcccccc----ccCceeEEEeCCCCCHHHHHHHHHHHhCCCC-----------CCC
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVFRLTKTILISIVPDQ-----------NVD 277 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~ 277 (350)
+.-.++.|+|++|+|||+|+.++........ .-..++|++....++...+. .++..++... ...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 3457999999999999999999886522111 23468899998877766554 3344443321 001
Q ss_pred CCCHHHHHHHHHHHcC---CceEEEEEeCC
Q 048163 278 NHNLNKLQEELKKKLS---GKIFLLVLDDV 304 (350)
Q Consensus 278 ~~~~~~~~~~l~~~l~---~kr~LlVlDdv 304 (350)
......+...+...++ .+--|||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 1222233334444443 56679999999
No 73
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0013 Score=60.84 Aligned_cols=51 Identities=25% Similarity=0.256 Sum_probs=37.0
Q ss_pred cccccchhhHHHHHHHHhc----CCC---CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLR----DDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.++.++.|.+.+.- ++. .+-...+-+.++||+|+|||.||+.+++.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 5577888887777765432 110 02234678999999999999999999986
No 74
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.91 E-value=0.0013 Score=62.42 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=35.1
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..++.+..++..-.. +....+.+.++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKS-KKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHh-CCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 6789999887765544322110 1123356889999999999999999886
No 75
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.91 E-value=0.0035 Score=57.55 Aligned_cols=85 Identities=21% Similarity=0.160 Sum_probs=56.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQN----VDNHNLNKLQEELK 289 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 289 (350)
.-.++.|.|++|+||||||.++.... ...-..++|++....++.. ....++.... ....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34688889999999999999987652 2223468999998876643 2344443221 12345666666676
Q ss_pred HHcC-CceEEEEEeCCC
Q 048163 290 KKLS-GKIFLLVLDDVW 305 (350)
Q Consensus 290 ~~l~-~kr~LlVlDdv~ 305 (350)
...+ ++--+||+|.+-
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6654 345699999994
No 76
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.0027 Score=54.35 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=54.0
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcccccc----ccCceeEEEeCCCCCHHHHHHHHHHHhCCCCC--------CCCCCHH
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVFRLTKTILISIVPDQN--------VDNHNLN 282 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~~ 282 (350)
-.++.|+|++|+|||||++.+........ .-..++|++....+....+ ..++..++.... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999999886421111 1346788888776555443 234444433210 0112222
Q ss_pred H---HHHHHHHHcC-CceEEEEEeCCCC
Q 048163 283 K---LQEELKKKLS-GKIFLLVLDDVWN 306 (350)
Q Consensus 283 ~---~~~~l~~~l~-~kr~LlVlDdv~~ 306 (350)
+ ....+.+.+. .+.-+||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2233444443 4678999999943
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.83 E-value=0.0015 Score=58.19 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.....+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578889999999999999999986
No 78
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0015 Score=61.34 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=37.7
Q ss_pred cccccchhhHHHHHHHHhc----CCC---CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLR----DDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.++.++.|.+.+.- ++. .+-+..+-|.++||+|+|||.||+.+++.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 5678888888887765432 110 12345688999999999999999999986
No 79
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.83 E-value=0.0077 Score=53.44 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred CCCeEEEEEeecCCCchHHHHHHHHhcccccc-ccCceeEEEeCCCCCHHHHHHHHHHH------hCCCCCCCCCCHHHH
Q 048163 212 DGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-HFDLKAWTCVSDDFDVFRLTKTILIS------IVPDQNVDNHNLNKL 284 (350)
Q Consensus 212 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~il~~------l~~~~~~~~~~~~~~ 284 (350)
.....+|+|+|+.|+|||||++.+........ .......|+...-+-.......+... +.....+...+...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 34678999999999999999998876432211 12234443544433223333333222 111111245566666
Q ss_pred HHHHHHHcC
Q 048163 285 QEELKKKLS 293 (350)
Q Consensus 285 ~~~l~~~l~ 293 (350)
.+.+.....
T Consensus 108 ~~~l~~l~~ 116 (290)
T 1odf_A 108 QEVLNTIFN 116 (290)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 665555433
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.75 E-value=0.0056 Score=61.79 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=58.0
Q ss_pred cccccchhhHHHHHHHHh----cCCC---CCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHH
Q 048163 188 AKVYGRETEKKDVVELLL----RDDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVF 260 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 260 (350)
.++.|.++.+++|.+++. .++. .+-...+-|.++|++|+|||+||+.+++.. ..+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHH-----
Confidence 456788877777776542 2221 123456789999999999999999999862 3333 3333321
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 048163 261 RLTKTILISIVPDQNVDNHNLNKLQEELKKKLSGKIFLLVLDDVWN 306 (350)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 306 (350)
++ ... .......+...+........++|+||++..
T Consensus 274 -----l~----sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 274 -----IM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp -----HH----SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred -----hh----ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 11 000 111122233334444456789999999943
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.75 E-value=0.0028 Score=53.70 Aligned_cols=116 Identities=14% Similarity=0.001 Sum_probs=61.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC------------------
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV------------------ 276 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~------------------ 276 (350)
-.++.|.|+.|+|||||++.+...... .-..++|++... ...++...+. .++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 368999999999999999999854221 112456665543 3444433332 33221100
Q ss_pred ----CCCCHHHHHHHHHHHcC---CceEEEEEeCCCCC---CcccHhhhcCccCC--CCCCceEEEecCCh
Q 048163 277 ----DNHNLNKLQEELKKKLS---GKIFLLVLDDVWNE---NYNDWDRLRPPFEA--GAPGSKIIVTARNQ 335 (350)
Q Consensus 277 ----~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 335 (350)
...+..++...+...+. -+..+||+|..-.. +......+...|.. ...|..||++|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11145555555555442 23349999998421 11222333333321 13578899999886
No 82
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.73 E-value=0.0051 Score=56.14 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=55.3
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKLQEELK 289 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 289 (350)
.-.++.|.|++|+|||||+.++.... ...-..++|++....++.. ..+.++..... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35789999999999999999987642 2222467899988766643 23444432210 2345566655555
Q ss_pred HHcC-CceEEEEEeCCC
Q 048163 290 KKLS-GKIFLLVLDDVW 305 (350)
Q Consensus 290 ~~l~-~kr~LlVlDdv~ 305 (350)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 456699999994
No 83
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.002 Score=53.82 Aligned_cols=43 Identities=23% Similarity=0.187 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 193 RETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
|.+.++.|.+.+.... .....+++|.|+.|+|||||++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556777777776542 235689999999999999999998763
No 84
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0025 Score=59.90 Aligned_cols=51 Identities=24% Similarity=0.174 Sum_probs=37.1
Q ss_pred cccccchhhHHHHHHHHhc----CC---CCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLR----DD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.++.++.|.+.+.- ++ ..+-...+-|.++||+|+|||.||+.+++.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3577888888877765421 11 002245688999999999999999999986
No 85
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.68 E-value=0.0048 Score=55.72 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=56.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcccccc----ccCceeEEEeCCCCCHHHHHHHHHHHhCCCCC--------CCCCCH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVFRLTKTILISIVPDQN--------VDNHNL 281 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 281 (350)
.-.++.|+|++|+|||+|+.++........ .-..++|++....++...+. .++..++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 346899999999999999999886521111 12468999998877766554 34455543211 012222
Q ss_pred H---HHHHHHHHHcC--CceEEEEEeCC
Q 048163 282 N---KLQEELKKKLS--GKIFLLVLDDV 304 (350)
Q Consensus 282 ~---~~~~~l~~~l~--~kr~LlVlDdv 304 (350)
+ .+...+...++ .+--+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 3 23445555553 46779999999
No 86
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.68 E-value=0.0031 Score=59.96 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=34.3
Q ss_pred cccccchhhHHHHHHHHh---cCC---CCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLL---RDD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|.++.++++.+.+. ... ..+-...+-+.|+|++|+|||+||+.+...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 457888877766665543 210 001112345889999999999999999885
No 87
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.65 E-value=0.00082 Score=57.31 Aligned_cols=112 Identities=10% Similarity=-0.121 Sum_probs=61.1
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHcC
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV-DNHNLNKLQEELKKKLS 293 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~ 293 (350)
-.++.|.|+.|+||||++..+.... ..+-..++.+...... . ....++..++..... ......++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 4788999999999999998887653 2222233444333211 1 112333333322111 12234455566666555
Q ss_pred CceE-EEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCC
Q 048163 294 GKIF-LLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 334 (350)
Q Consensus 294 ~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 334 (350)
+.++ +||+|.+.....+..+.+ ..+.+ .|-.||+|-+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 4445 999999943322222233 22322 37789999884
No 88
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.65 E-value=0.0053 Score=55.27 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=56.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcccccc---------cc-----CceeEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQD---------HF-----DLKAWTCVSDDFDVFRLTKTILISIVPDQN---- 275 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---- 275 (350)
.-.++.|.|++|+|||+||.++........ .. ..++|++....++...+.. ++..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999999876421111 11 4689999988877665553 3444543210
Q ss_pred ----CCCCCHH---HHHHHHHHHcC--CceEEEEEeCC
Q 048163 276 ----VDNHNLN---KLQEELKKKLS--GKIFLLVLDDV 304 (350)
Q Consensus 276 ----~~~~~~~---~~~~~l~~~l~--~kr~LlVlDdv 304 (350)
....+.+ .+...+.+.++ .+--+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0122333 24445555553 45679999999
No 89
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.59 E-value=0.0011 Score=67.10 Aligned_cols=133 Identities=13% Similarity=0.149 Sum_probs=71.2
Q ss_pred cccccchhhHHHHHHHHhcCC---CCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHH
Q 048163 188 AKVYGRETEKKDVVELLLRDD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTK 264 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 264 (350)
..++|.+..++.+...+.... .........+.++|++|+|||++|+.+.+.. . ...+-++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 347888888888777665321 0012234578999999999999999998753 1 2234455544321100
Q ss_pred HHHHHhCCCCCCCCCCH---HHHHHHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCC-----------CCCceEEE
Q 048163 265 TILISIVPDQNVDNHNL---NKLQEELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAG-----------APGSKIIV 330 (350)
Q Consensus 265 ~il~~l~~~~~~~~~~~---~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiv 330 (350)
...+....+ ..... ..+...+.. ....+|+||++.......++.+...+..+ .....||.
T Consensus 530 --~~~l~g~~~-g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ 603 (758)
T 1r6b_X 530 --VSRLIGAPP-GYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_dssp --CSSSCCCCS-CSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred --HhhhcCCCC-CCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEE
Confidence 001111110 10000 112222222 34679999999766555566665554322 12345777
Q ss_pred ecCC
Q 048163 331 TARN 334 (350)
Q Consensus 331 Ttr~ 334 (350)
||..
T Consensus 604 tsN~ 607 (758)
T 1r6b_X 604 TTNA 607 (758)
T ss_dssp EECS
T ss_pred ecCc
Confidence 7754
No 90
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0029 Score=58.93 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=37.0
Q ss_pred cccccchhhHHHHHHHHhc----CCC---CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLR----DDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.++.++.|.+.+.- ++. .+-...+-|.++||+|+|||.||+.+++.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 4567888777777665432 110 12345688999999999999999999986
No 91
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.51 E-value=0.0088 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+++++|++|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998764
No 92
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.47 E-value=0.0074 Score=55.21 Aligned_cols=85 Identities=21% Similarity=0.131 Sum_probs=53.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKLQEELK 289 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 289 (350)
.-.++.|.|++|+||||||.++..... ..-..++|++....++... ...++..... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999876522 2224688999887776431 3444432210 2234555555554
Q ss_pred HHc-CCceEEEEEeCCC
Q 048163 290 KKL-SGKIFLLVLDDVW 305 (350)
Q Consensus 290 ~~l-~~kr~LlVlDdv~ 305 (350)
... +.+--+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 443 2445699999983
No 93
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.41 E-value=0.002 Score=57.39 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=37.2
Q ss_pred cccccchhhHHHHHHHHhcC---CCC-----CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRD---DLS-----NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~---~~~-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..++.+...+... ... .......+.++|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999998888877541 000 0012456789999999999999999875
No 94
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.40 E-value=0.012 Score=52.98 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=31.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 192 GRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
|....+..+...+.... ......+++|.|+.|+|||||++.+..-
T Consensus 71 ~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33344444444444432 2456789999999999999999998654
No 95
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.35 E-value=0.0048 Score=62.76 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=38.5
Q ss_pred ccccccchhhHHHHHHHHhc----CC---CCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLR----DD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-..++|.+..+++|.+++.. ++ ...-.....+.|+|++|+||||||+.+...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35688999888888887753 11 001234567999999999999999999875
No 96
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.33 E-value=0.0034 Score=52.69 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++|.+.+... .+...+++|+|+.|+|||||++.+...
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555432 235689999999999999999998764
No 97
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.33 E-value=0.0015 Score=59.39 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=34.8
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..++.+-..+..... .......+.++|++|+|||||++.+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567887766666655543200 0123467899999999999999999875
No 98
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.33 E-value=0.0083 Score=57.39 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=34.2
Q ss_pred ccccccchhhHHHHHHHH---hcCCCC---CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELL---LRDDLS---NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|.+..+..+.+.. ...... +-.-.+-+.|+|++|+|||+||+.+...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356788887666655543 222100 1111234899999999999999999875
No 99
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.26 E-value=0.0021 Score=51.87 Aligned_cols=20 Identities=50% Similarity=0.755 Sum_probs=18.8
Q ss_pred EEEEEeecCCCchHHHHHHH
Q 048163 216 SVIPIIGMGGLGKTTLAQLV 235 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v 235 (350)
.+|.|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 100
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.24 E-value=0.0023 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 101
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.21 E-value=0.006 Score=54.09 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 196 EKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++++..++.... ......+|.|.|++|+||||+++.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445554444322 2345688999999999999999999764
No 102
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.18 E-value=0.0056 Score=51.45 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=44.7
Q ss_pred EEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCC--------CCCCCCCHHHHHHHH
Q 048163 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPD--------QNVDNHNLNKLQEEL 288 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~--------~~~~~~~~~~~~~~l 288 (350)
+|.|.|++|+||+|+|+.+... |.. ..+ +..+++++.+..-... .....-+.+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g~-~~i------stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KGF-VHI------STGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HCC-EEE------EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HCC-eEE------cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999999874 322 222 3345555443321000 000223344556677
Q ss_pred HHHcCCceEEEEEeCCCC
Q 048163 289 KKKLSGKIFLLVLDDVWN 306 (350)
Q Consensus 289 ~~~l~~kr~LlVlDdv~~ 306 (350)
.+.+..... +|||+.-.
T Consensus 69 ~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHCCSSSC-EEEESCCC
T ss_pred HHhhccCCc-eEecCCch
Confidence 777865444 68899843
No 103
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.18 E-value=0.0032 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999764
No 104
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.15 E-value=0.0065 Score=57.32 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=50.4
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCC-HHHHHHHHHHHhCCCCC----CCCCC---HHH----
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VFRLTKTILISIVPDQN----VDNHN---LNK---- 283 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~~~~---~~~---- 283 (350)
..++|+|+.|+|||||++.+....... +-...+++.+.+..+ ..+++.++...-..... ....+ ...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 358899999999999999988753222 234556777777653 34555555432100000 01111 111
Q ss_pred HHHHHHHHc---CCceEEEEEeCC
Q 048163 284 LQEELKKKL---SGKIFLLVLDDV 304 (350)
Q Consensus 284 ~~~~l~~~l---~~kr~LlVlDdv 304 (350)
..-.+.+++ ++++.||++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 011233333 589999999999
No 105
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.14 E-value=0.0051 Score=56.46 Aligned_cols=53 Identities=15% Similarity=-0.024 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcccc-ccccCceeEEEeCCCC
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHFDLKAWTCVSDDF 257 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~ 257 (350)
+.++.+..-. .-..++|+|+.|+|||||++.+.+.... ...+. ++++-+.+..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 4566665432 3468999999999999999998764211 12233 3457777654
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.11 E-value=0.0029 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.8
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998764
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.11 E-value=0.009 Score=54.50 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=52.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcccccccc----CceeEEEeCCCCCHHHHHHHHHHHhCCCCC--------CCCCC-
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF----DLKAWTCVSDDFDVFRLTKTILISIVPDQN--------VDNHN- 280 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~- 280 (350)
.-.++.|+|+.|+|||||++++.......... ..++|++....+....+ ..+......... ....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45899999999999999999998652111111 23588888765543332 233333322110 00111
Q ss_pred --HHHHHHHHHHHcC------CceEEEEEeCCCC
Q 048163 281 --LNKLQEELKKKLS------GKIFLLVLDDVWN 306 (350)
Q Consensus 281 --~~~~~~~l~~~l~------~kr~LlVlDdv~~ 306 (350)
...+...+...+. .+.-|||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 2223334444443 4677999999943
No 108
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.11 E-value=0.003 Score=55.13 Aligned_cols=51 Identities=27% Similarity=0.318 Sum_probs=34.7
Q ss_pred cccccchhhHHHHHHHHhc---CCC---CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLR---DDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..++.+.+.+.. ++. .+....+.+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 5688988877777765541 000 00011234789999999999999999885
No 109
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.10 E-value=0.051 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.++|++|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999988754
No 110
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.09 E-value=0.003 Score=52.47 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=60.9
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCC---CCCHHHHHHHHHH---HhCCCCCCCC-------CCHH
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD---DFDVFRLTKTILI---SIVPDQNVDN-------HNLN 282 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~il~---~l~~~~~~~~-------~~~~ 282 (350)
..|-|++..|.||||+|--..-. .-++=..+..+..-. ..+...++..+-- ..+....-.. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 56667777779999999877653 223333344444332 2223333333200 0000000001 1112
Q ss_pred HHHHHHHHHcCCce-EEEEEeCCCC---CCcccHhhhcCccCCCCCCceEEEecCCh
Q 048163 283 KLQEELKKKLSGKI-FLLVLDDVWN---ENYNDWDRLRPPFEAGAPGSKIIVTARNQ 335 (350)
Q Consensus 283 ~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 335 (350)
......++.+...+ =|||||++-. ......+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 23344555555444 4999999922 12234455555555555677999999985
No 111
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.07 E-value=0.0036 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 112
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.07 E-value=0.02 Score=53.15 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=52.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcccc----ccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCC--------CCCCCH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQV----QDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQN--------VDNHNL 281 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 281 (350)
.-.++.|+|++|+|||||+..++-.... ...-..++|++....+....+ +.+.+.++.... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 3478999999999999999977532111 112345888888776665443 335555543211 011222
Q ss_pred H---HHHHHHHHHc-CCceEEEEEeCC
Q 048163 282 N---KLQEELKKKL-SGKIFLLVLDDV 304 (350)
Q Consensus 282 ~---~~~~~l~~~l-~~kr~LlVlDdv 304 (350)
. .....+...+ ..+.-+||+|.+
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecch
Confidence 2 2222333333 246789999998
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.0033 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|+|+.|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.04 E-value=0.0037 Score=51.21 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=21.5
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999864
No 115
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.03 E-value=0.0038 Score=56.39 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=35.7
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|++..++.+...+... .-+.++|++|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH
Confidence 45789988888888877653 35889999999999999999874
No 116
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.03 E-value=0.0056 Score=58.60 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=36.1
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
..++|.+..++.+...+... .-+.++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 45688888888888777654 368899999999999999998853
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.00 E-value=0.005 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.|.|++|+||||+++.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998764
No 118
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.00 E-value=0.019 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.3
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+.|.|++|+|||+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999998875
No 119
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.98 E-value=0.0076 Score=52.27 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 195 TEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+.++..+..... ......+|.|.|++|+||||+++.+...
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344455555554432 3445689999999999999999998764
No 120
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.97 E-value=0.0045 Score=51.56 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=21.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|+|+.|+|||||++.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999875
No 121
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.94 E-value=0.0031 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 122
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.92 E-value=0.0049 Score=51.67 Aligned_cols=25 Identities=44% Similarity=0.356 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+++|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 123
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.90 E-value=0.0049 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999875
No 124
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.89 E-value=0.0059 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...++.|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998763
No 125
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.89 E-value=0.036 Score=49.70 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=34.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
.-.++.|.|.+|+|||||+.++....-..+ ..++|++... +..++...++
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHH
Confidence 347899999999999999999886532222 5677877663 4444444444
No 126
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.88 E-value=0.0049 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999865
No 127
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.85 E-value=0.036 Score=49.47 Aligned_cols=43 Identities=28% Similarity=0.238 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCCCC--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 196 EKKDVVELLLRDDLS--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 196 ~~~~l~~~L~~~~~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+.|.+.|...... ......++.|+|++|+||||++..+...
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 344555555432211 1245689999999999999999998865
No 128
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.82 E-value=0.005 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999998764
No 129
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.82 E-value=0.0041 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+++.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 130
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.82 E-value=0.0042 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.6
Q ss_pred eEEEEEeecCCCchHHHHHHHH
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVY 236 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~ 236 (350)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4789999999999999999654
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.80 E-value=0.0048 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+.|.|+|+.|+||||+++.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999764
No 132
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.80 E-value=0.0062 Score=50.48 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHh
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 133
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.79 E-value=0.0051 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+++|.|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999999764
No 134
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.79 E-value=0.0079 Score=55.10 Aligned_cols=50 Identities=30% Similarity=0.256 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHHhc------CC---CCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 189 KVYGRETEKKDVVELLLR------DD---LSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~------~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++|.+..++.+...+.. .. .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 468888888888777731 00 001123467899999999999999999875
No 135
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.78 E-value=0.012 Score=53.75 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=60.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKLSGK 295 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (350)
.+++|+|+.|+|||||.+.+..... ......+ +.+..+.... .......+ .......+.......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i-~t~ed~~e~~--~~~~~~~v--~q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHI-LTIEDPIEFV--HESKKCLV--NQREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEE-EEEESSCCSC--CCCSSSEE--EEEEBTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc--CCCCcEE-EEccCcHHhh--hhccccce--eeeeeccccCCHHHHHHHHhhhC
Confidence 5999999999999999998876421 1111111 2222211100 00000000 00000111123445788888888
Q ss_pred eEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCChhHHH
Q 048163 296 IFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQEVAA 339 (350)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~ 339 (350)
.=+|++|++-+ ...+..+... ...|..||+||...+.+.
T Consensus 197 PdvillDEp~d--~e~~~~~~~~---~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTA---AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence 88999999943 2334433322 224667999999877664
No 136
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.78 E-value=0.0048 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+.|.|+||.|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999998764
No 137
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.77 E-value=0.012 Score=53.53 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=31.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 192 GRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+.-.+.+++.+...- ..+....|.|+|+.|+||||+++.+...
T Consensus 3 ~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34445566666654322 1335677999999999999999988764
No 138
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.77 E-value=0.0069 Score=50.36 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|.|.|+.|+||||+++.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998764
No 139
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.71 E-value=0.006 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+++|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998764
No 140
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.70 E-value=0.0055 Score=50.21 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998765
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.69 E-value=0.0056 Score=50.19 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|.|+.|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 142
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.68 E-value=0.0084 Score=49.14 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999765
No 143
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.68 E-value=0.0045 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.67 E-value=0.0066 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 145
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.65 E-value=0.0077 Score=50.32 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|+|+|+.|+||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998764
No 146
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.64 E-value=0.077 Score=49.74 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCC---CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDL---SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+.|.++|..... ......++|.++|.+|+||||++..+...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456666543211 11245789999999999999999998754
No 147
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.63 E-value=0.0068 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 148
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.63 E-value=0.009 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.|.|+.|+||||+++.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999764
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.61 E-value=0.0072 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998764
No 150
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.60 E-value=0.0069 Score=54.88 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=32.5
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458898876665544443221 223889999999999999999875
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.59 E-value=0.008 Score=49.30 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998763
No 152
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.59 E-value=0.0054 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.|+|+.|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999764
No 153
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.59 E-value=0.0067 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 154
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.57 E-value=0.0079 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 212 DGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 212 ~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-...++|.|.|++|+||||+|+.+...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998875
No 155
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.57 E-value=0.0067 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.57 E-value=0.0073 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999764
No 157
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.56 E-value=0.0052 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998753
No 158
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.56 E-value=0.0058 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467889999999999999998764
No 159
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.56 E-value=0.0066 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 160
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.53 E-value=0.046 Score=51.72 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=63.2
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCC-HHHHHHHHHHHhCCC----
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VFRLTKTILISIVPD---- 273 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~---- 273 (350)
+.++.|..-. +-.-++|.|..|+|||+|+..+.+.. .+.+-+.++++-+.+... +.+++.++...-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 3566665432 34568999999999999999988752 123457888888888774 456777776642221
Q ss_pred ---CCC----CC-CC------HHHHHHHHHHHc---CCceEEEEEeCC
Q 048163 274 ---QNV----DN-HN------LNKLQEELKKKL---SGKIFLLVLDDV 304 (350)
Q Consensus 274 ---~~~----~~-~~------~~~~~~~l~~~l---~~kr~LlVlDdv 304 (350)
... .. .. .....-.+.+++ +++..||++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 100 11 11 112233344555 368999999998
No 161
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.53 E-value=0.0087 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|.|+.|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 162
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.51 E-value=0.0082 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998764
No 163
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.51 E-value=0.0075 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998875
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.50 E-value=0.062 Score=50.28 Aligned_cols=26 Identities=31% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|.++|++|+||||++..+...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988754
No 165
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.49 E-value=0.0092 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|+.|+||||+++.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999763
No 166
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.49 E-value=0.0082 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 167
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.48 E-value=0.0084 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 168
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.47 E-value=0.01 Score=54.57 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=56.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCcee-EEEeCCCCCHHHHHHHHHHH--hCCCCCCCCCCHHHHHHHHHHH
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKA-WTCVSDDFDVFRLTKTILIS--IVPDQNVDNHNLNKLQEELKKK 291 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~il~~--l~~~~~~~~~~~~~~~~~l~~~ 291 (350)
-.+++|+|+.|+|||||.+.+..... ......+ ++...-.+....- ..++.+ ++. .. ..+...+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~----~~---~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DT---KSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TB---SCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhhhhccC-ceEEEeeecCC----CH---HHHHHHHHHH
Confidence 46899999999999999999876421 1111222 2221110000000 000000 000 11 1224567777
Q ss_pred cCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCChhHH
Q 048163 292 LSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQEVA 338 (350)
Q Consensus 292 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va 338 (350)
|....=+|++|++-+ ......+... ...|..|+.|+...++.
T Consensus 206 L~~~pd~illdE~~d--~e~~~~~l~~---~~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 206 LREDPDVIFVGEMRD--LETVETALRA---AETGHLVFGTLHTNTAI 247 (372)
T ss_dssp TTSCCSEEEESCCCS--HHHHHHHHHH---HTTTCEEEECCCCCSHH
T ss_pred hhhCcCEEEECCCCC--HHHHHHHHHH---HhcCCEEEEEECcchHH
Confidence 777777899999943 2222222221 23466788888876644
No 169
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.45 E-value=0.0077 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.|.|+.|+||||+++.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999764
No 170
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.44 E-value=0.008 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 171
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.42 E-value=0.0079 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.39 E-value=0.0084 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998754
No 173
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.39 E-value=0.0098 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 174
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.38 E-value=0.0086 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+++.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 175
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.38 E-value=0.0082 Score=48.68 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+.|.|.|++|+||||+++.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 176
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.36 E-value=0.0092 Score=49.67 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+++.|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3578999999999999999999864
No 177
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.36 E-value=0.019 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999998865
No 178
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.34 E-value=0.0065 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 179
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.34 E-value=0.011 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998763
No 180
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.33 E-value=0.0064 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=17.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 181
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.32 E-value=0.01 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+++|+|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34689999999999999999998764
No 182
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.25 E-value=0.026 Score=46.41 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 183
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.24 E-value=0.008 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|.|+.|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.24 E-value=0.0099 Score=48.78 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 185
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.23 E-value=0.011 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+++|+|++|+|||||++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998753
No 186
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.22 E-value=0.011 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 187
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.20 E-value=0.01 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 188
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.20 E-value=0.011 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|+.|+||||+++.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 189
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.018 Score=47.10 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44568899999999999999999765
No 190
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.19 E-value=0.012 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 191
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.19 E-value=0.023 Score=50.70 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+++|+|+.|+||||+++.+...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998754
No 192
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.18 E-value=0.0087 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999998764
No 193
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.16 E-value=0.007 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 194
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.14 E-value=0.011 Score=50.07 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999998864
No 195
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.13 E-value=0.027 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.3
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+++|.|+.|+|||||++.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998764
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.13 E-value=0.016 Score=48.61 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 193 RETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+..+.+...+... ....+.|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555554322 4689999999999999999998765
No 197
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.12 E-value=0.015 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||.+.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 198
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.12 E-value=0.01 Score=51.24 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEeecCCCchHHHHHHHHhc
Q 048163 218 IPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 218 i~I~G~gGvGKTtLa~~v~~~ 238 (350)
+.|+|+.|+|||||++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999875
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.11 E-value=0.014 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999998764
No 200
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.10 E-value=0.012 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
..+|+|+|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 201
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.10 E-value=0.014 Score=51.52 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.1
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHh
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
+...+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999873
No 202
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.09 E-value=0.01 Score=52.12 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=31.1
Q ss_pred cccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDL-------SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.++.++.|.+.+..+-. .+-.-.+-+.|+|++|+|||||++.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456666666666554321100 00011223999999999999999999875
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.07 E-value=0.019 Score=47.96 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+..+..++..- +....+.|+|++|+|||++|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555655431 23456999999999999999988875
No 204
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.07 E-value=0.13 Score=48.41 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCC-HHHHHHHHHHHhCCC----
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VFRLTKTILISIVPD---- 273 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~---- 273 (350)
+.++.|..-. +-.-++|.|..|+|||+|+..+.+.. .+.+-+.++++-+.+... +.++++++...-...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 4667776432 34678999999999999999988752 123446678888887664 456777777653222
Q ss_pred --CCC----CCCC-H------HHHHHHHHHHc---CCceEEEEEeCC
Q 048163 274 --QNV----DNHN-L------NKLQEELKKKL---SGKIFLLVLDDV 304 (350)
Q Consensus 274 --~~~----~~~~-~------~~~~~~l~~~l---~~kr~LlVlDdv 304 (350)
... .... . ....-.+.+++ +++..||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 100 1111 1 11112233333 579999999998
No 205
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.06 E-value=0.011 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|+.|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 206
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.05 E-value=0.04 Score=60.66 Aligned_cols=84 Identities=21% Similarity=0.149 Sum_probs=55.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKLQEELK 289 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 289 (350)
..+.+-|+|++|+|||+||.++... ....=..++|+++.+.++... ++.++.+... .....+...+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4579999999999999999999775 223334578888887776555 3444422110 2233445555555
Q ss_pred HHc-CCceEEEEEeCC
Q 048163 290 KKL-SGKIFLLVLDDV 304 (350)
Q Consensus 290 ~~l-~~kr~LlVlDdv 304 (350)
+.. +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 544 356779999999
No 207
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.02 E-value=0.014 Score=49.28 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=31.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccc---c-ccCceeEEEeCCCCCH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---D-HFDLKAWTCVSDDFDV 259 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~ 259 (350)
.-.+++|+|+.|+|||||++.+....... . .....+|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 34799999999999999999997531111 1 2334778776654443
No 208
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.02 E-value=0.041 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.|++|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58889999999999999998764
No 209
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.01 E-value=0.014 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHh
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
...++|+|.|-|||||||.+-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3579999999999999999887754
No 210
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.01 E-value=0.066 Score=48.39 Aligned_cols=49 Identities=18% Similarity=-0.025 Sum_probs=33.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
-.++.|.|.+|+|||||+..+...... +=..++|++... +..++...++
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm--s~~ql~~Rll 94 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM--SAEQLALRAL 94 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS--CHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC--CHHHHHHHHH
Confidence 468899999999999999999875322 223566766543 4455555443
No 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.00 E-value=0.088 Score=49.99 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.8
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+++|+|+.|+|||||++.+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 45679999999999999999998764
No 212
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.00 E-value=0.019 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+.++|++|+|||++|+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999875
No 213
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.99 E-value=0.049 Score=54.98 Aligned_cols=52 Identities=25% Similarity=0.199 Sum_probs=36.5
Q ss_pred ccccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLRDDL-------SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-..+.|.++.++.|.+.+.-+-. .+....+-+.++||+|.|||.||+.+.+.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 34567777777777665543210 12234566889999999999999999986
No 214
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.98 E-value=0.016 Score=49.97 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|.|++|+||||+|+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999764
No 215
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.98 E-value=0.028 Score=51.31 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+++|+|+.|+||||+++.+...
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35689999999999999999998754
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.97 E-value=0.013 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998873
No 217
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.96 E-value=0.012 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|+.|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999764
No 218
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.95 E-value=0.015 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 219
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.92 E-value=0.016 Score=48.04 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|+|.|+.|+||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999998763
No 220
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.90 E-value=0.014 Score=48.89 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.5
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 221
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.90 E-value=0.0079 Score=55.16 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcccc-ccccCceeEEEeCCCC
Q 048163 198 KDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHFDLKAWTCVSDDF 257 (350)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~ 257 (350)
-+.++.|..-. +-..++|+|.+|+|||+|+..+.+.... ...+. ++++-+.+..
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 46778776532 3457899999999999999998875321 12233 3556666653
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.87 E-value=0.018 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998764
No 223
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.87 E-value=0.0094 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.9
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 224
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.87 E-value=0.018 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 225
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.83 E-value=0.088 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++.++|++|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 226
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.81 E-value=0.016 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 227
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.77 E-value=0.015 Score=49.89 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=32.1
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEEEecCChhHHH
Q 048163 287 ELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKIIVTARNQEVAA 339 (350)
Q Consensus 287 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~va~ 339 (350)
.+...|-.+.=+|+||+--.. +...-..+...+... ..|..||++|++.+++.
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 455556667778999998432 112222333333321 23778999999988764
No 228
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.76 E-value=0.016 Score=49.36 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=31.6
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCC-CCCCceEEEecCChhHH
Q 048163 287 ELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEA-GAPGSKIIVTARNQEVA 338 (350)
Q Consensus 287 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~va 338 (350)
.+...|-.+.=+++||+--.. +...-..+...+.. ...|..||++|++.+.+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 455666677889999998332 11222223333321 12377899999998876
No 229
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.76 E-value=0.016 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.5
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999874
No 230
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.74 E-value=0.043 Score=45.57 Aligned_cols=85 Identities=21% Similarity=0.147 Sum_probs=47.1
Q ss_pred EEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKLQEELKKKL 292 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~~l 292 (350)
.|+|=|..|+||||.++.+++.. ......+++..-+......+.++.++..-...... -..+..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999998753 22223344444443334455566655432211000 0112233445566666
Q ss_pred CCceEEEEEeCC
Q 048163 293 SGKIFLLVLDDV 304 (350)
Q Consensus 293 ~~kr~LlVlDdv 304 (350)
...+ .+|.|-.
T Consensus 80 ~~g~-~Vi~DRy 90 (197)
T 3hjn_A 80 SEGY-AVLLDRY 90 (197)
T ss_dssp TTTC-EEEEESC
T ss_pred HCCC-eEEeccc
Confidence 5544 4677866
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.72 E-value=0.015 Score=51.01 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=32.8
Q ss_pred ccccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 187 EAKVYGRETEKKDVVELLLRDDL------SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|.+..+.++.+....-.. .+-.-.+-+.|+|+.|+|||||++.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 34678887666655544321100 00011123899999999999999999875
No 232
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.72 E-value=0.011 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.3
Q ss_pred eEEEEEeecCCCchHHHHHHHH
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVY 236 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~ 236 (350)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 233
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.72 E-value=0.014 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEeecCCCchHHHHHHHHhcc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
+++|+|+.|+|||||.+.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999987653
No 234
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.70 E-value=0.063 Score=50.83 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHH-HHHHhccccccccC-ceeEEEeCCCCC-HHHHHHHHHHHhCCCCC
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFD-LKAWTCVSDDFD-VFRLTKTILISIVPDQN 275 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~~~~ 275 (350)
+.++.|..-. +-..++|.|..|+|||+|| ..+.+.. +-+ .++++-+.+..+ +.++...+...-.....
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4566665432 3356789999999999995 5777752 234 357778887664 44666666553222111
Q ss_pred C----CCCC--HHH-----HHHHHHHHc--CCceEEEEEeCC
Q 048163 276 V----DNHN--LNK-----LQEELKKKL--SGKIFLLVLDDV 304 (350)
Q Consensus 276 ~----~~~~--~~~-----~~~~l~~~l--~~kr~LlVlDdv 304 (350)
. ..++ ... ..-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0 1111 111 112333333 589999999999
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.69 E-value=0.31 Score=46.48 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCC-C--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDL-S--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~-~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+.|.++|..... . ......+|.|+|.+|+||||++..+...
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555543221 1 1245789999999999999999998743
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.68 E-value=0.021 Score=51.52 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998764
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.65 E-value=0.094 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+++|+|++|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998765
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.64 E-value=0.015 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998754
No 239
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.60 E-value=0.02 Score=46.60 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...++.|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998864
No 240
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.57 E-value=0.11 Score=44.15 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=47.7
Q ss_pred EEEEEeecCCCchHHHHHHHHhcc-cccccc-CceeEEEeCCCCCHHHHHHHHHHHhCCCCCC--------------C--
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDK-QVQDHF-DLKAWTCVSDDFDVFRLTKTILISIVPDQNV--------------D-- 277 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~-~~~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--------------~-- 277 (350)
..+.|.|+.|+||||+.....-+. ...+.+ ...+.+..........+...+...++..... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 578999999999998776654331 111222 2233333333233334444454443322110 0
Q ss_pred ---CCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 048163 278 ---NHNLNKLQEELKKKLSGKIFLLVLDDVWN 306 (350)
Q Consensus 278 ---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 306 (350)
..+.+.+...+...+++- -+||+|++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 123456666666655443 4789999964
No 241
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.50 E-value=0.021 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998763
No 242
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.50 E-value=0.028 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....++|+|+.|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999998765
No 243
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.48 E-value=0.019 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 244
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.47 E-value=0.019 Score=50.49 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEEEecCChhHHHhc
Q 048163 286 EELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKIIVTARNQEVAAIM 341 (350)
Q Consensus 286 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~va~~~ 341 (350)
-.|...|-.+.=+|+||+--.. +...-..+...+... ..|..||++|.+-+.+..+
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~ 210 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY 210 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGG
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHh
Confidence 3456666777889999998332 222222333333221 2377889999887665543
No 245
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.47 E-value=0.057 Score=51.21 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHH-HHHHhccccccccC-ceeEEEeCCCCC-HHHHHHHHHHHhCCCCC
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFD-LKAWTCVSDDFD-VFRLTKTILISIVPDQN 275 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~~~~ 275 (350)
+.++.|..-. +-..++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ +.++.+.+...-.....
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4566665432 2356899999999999995 5777752 244 357777887664 44666666543111110
Q ss_pred ----CCCCC--HHH-----HHHHHHHHc--CCceEEEEEeCC
Q 048163 276 ----VDNHN--LNK-----LQEELKKKL--SGKIFLLVLDDV 304 (350)
Q Consensus 276 ----~~~~~--~~~-----~~~~l~~~l--~~kr~LlVlDdv 304 (350)
...++ ... ..-.+.+++ +++..||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 01111 111 111233333 589999999999
No 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.46 E-value=0.019 Score=50.08 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.+.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999864
No 247
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.46 E-value=0.012 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=18.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+..+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998763
No 248
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.44 E-value=0.021 Score=48.80 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 249
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.43 E-value=0.023 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|.|+.|+||||+++.+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999774
No 250
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.38 E-value=0.024 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 251
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.38 E-value=0.033 Score=52.30 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=35.6
Q ss_pred cccccchhhHHHHHHHHhcC-------CC-CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRD-------DL-SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.++.++.|...+... .. ......+.+.++|++|+|||++|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45788888777776665321 00 01123456899999999999999999875
No 252
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.38 E-value=0.021 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.37 E-value=0.021 Score=49.69 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 254
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.36 E-value=0.021 Score=49.97 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999864
No 255
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.35 E-value=0.023 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 256
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.35 E-value=0.13 Score=45.59 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++.++|++|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998754
No 257
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.34 E-value=0.024 Score=48.05 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.8
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 258
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.34 E-value=0.027 Score=47.91 Aligned_cols=26 Identities=27% Similarity=0.109 Sum_probs=22.6
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44679999999999999999988763
No 259
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.33 E-value=0.03 Score=55.03 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=35.0
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46789888887777666533 47899999999999999999875
No 260
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.32 E-value=0.048 Score=49.70 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+...+... .+...+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555432 235789999999999999999998653
No 261
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.29 E-value=0.055 Score=46.04 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
....|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998763
No 262
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.29 E-value=0.03 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 263
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.29 E-value=0.029 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.-|.|+|.+|+|||||.+.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998765
No 264
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.28 E-value=0.031 Score=48.28 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999753
No 265
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.27 E-value=0.022 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.+.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 36899999999999999999874
No 266
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.27 E-value=0.019 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..|.|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999763
No 267
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.26 E-value=0.023 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 268
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.25 E-value=0.026 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998875
No 269
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.24 E-value=0.025 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998863
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.23 E-value=0.023 Score=49.07 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.23 E-value=0.025 Score=48.70 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 272
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.23 E-value=0.22 Score=47.60 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=34.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
.-.++.|.|.+|+|||||+.++....... +=..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHH
Confidence 34688999999999999999998753221 123577877655 3445554443
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.22 E-value=0.019 Score=48.41 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=62.7
Q ss_pred EEEEEeecCCCchHHHHHHHHhccc-------ccc----cc-CceeEEEeCCC----CCHHH----------------HH
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQ-------VQD----HF-DLKAWTCVSDD----FDVFR----------------LT 263 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~-------~~~----~F-~~~~wv~~~~~----~~~~~----------------~~ 263 (350)
.+++|+|+.|+|||||.+.++.-.+ +.+ .+ ..+.+|.-... .++.+ -.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 5789999999999999999875321 000 00 11333321111 12222 22
Q ss_pred HHHHHHhCCCCCC---CCCCHHH-HHHHHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC-CCCceEEEecCChhH
Q 048163 264 KTILISIVPDQNV---DNHNLNK-LQEELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG-APGSKIIVTARNQEV 337 (350)
Q Consensus 264 ~~il~~l~~~~~~---~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v 337 (350)
.++++.++..... ..-+-.+ ..-.+...|-.++=+++||+--.. +......+...+... ..|..||++|.+.+.
T Consensus 116 ~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 116 MDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp HHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred HHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3444555443210 1112222 223455666677889999998432 222223333333211 136678888888655
Q ss_pred HH
Q 048163 338 AA 339 (350)
Q Consensus 338 a~ 339 (350)
+.
T Consensus 196 ~~ 197 (214)
T 1sgw_A 196 YC 197 (214)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.19 E-value=0.024 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 275
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.18 E-value=0.024 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...++|+|+.|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999865
No 276
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.18 E-value=0.022 Score=46.37 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-|.|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.041 Score=46.87 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=28.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCC
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 255 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 255 (350)
-.++.|.|++|+|||||+.++..... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 46899999999999999988865421 1223577777654
No 278
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.14 E-value=0.038 Score=51.85 Aligned_cols=42 Identities=31% Similarity=0.368 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCC-C--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDL-S--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~-~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+.|.+++..... . ......+|.|+|++|+||||++..+...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555543311 0 1234579999999999999999998764
No 279
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.14 E-value=0.024 Score=49.65 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=31.8
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEEEecCChhHHH
Q 048163 287 ELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKIIVTARNQEVAA 339 (350)
Q Consensus 287 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~va~ 339 (350)
.|.+.|-.+.=+|+||+--.. +...-..+...+... ..|..||++|.+.+.+.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 355555667789999998432 122222333333322 23778999999987765
No 280
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.14 E-value=0.028 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.13 E-value=0.025 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.7
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998753
No 282
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.13 E-value=0.049 Score=51.02 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccC----ceeEEEeCCCCC-HHHHHHHHHHHhCCC
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD----LKAWTCVSDDFD-VFRLTKTILISIVPD 273 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~~-~~~~~~~il~~l~~~ 273 (350)
+.++.|..-. +-.-++|.|..|+|||+|+.++.+.... +.+ .++++-+.+... +.+++.++...-...
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 3556555432 2234688999999999999999887433 222 567777776553 456666655431111
Q ss_pred CC-----CCCCC-HH-----HHHHHHHHHc---CCceEEEEEeCC
Q 048163 274 QN-----VDNHN-LN-----KLQEELKKKL---SGKIFLLVLDDV 304 (350)
Q Consensus 274 ~~-----~~~~~-~~-----~~~~~l~~~l---~~kr~LlVlDdv 304 (350)
.. ..+.. .. ...-.+.+++ +++..||++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 00 01111 11 1122344444 379999999999
No 283
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.09 E-value=0.026 Score=48.85 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998753
No 284
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.09 E-value=0.029 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=19.8
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998854
No 285
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.08 E-value=0.026 Score=48.91 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.07 E-value=0.1 Score=57.49 Aligned_cols=85 Identities=21% Similarity=0.131 Sum_probs=57.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKLQEELK 289 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 289 (350)
.-.++.|.|++|+||||||.++..... ..-..++|++....++... .+.++..... ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457999999999999999999987532 2234688988888776431 4445443221 3455666666666
Q ss_pred HHc-CCceEEEEEeCCC
Q 048163 290 KKL-SGKIFLLVLDDVW 305 (350)
Q Consensus 290 ~~l-~~kr~LlVlDdv~ 305 (350)
... +.+.-|||+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3456699999994
No 287
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.05 E-value=0.026 Score=49.30 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999864
No 288
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.03 E-value=0.029 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998764
No 289
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.02 E-value=0.031 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-|.++|.+|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999754
No 290
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.99 E-value=0.26 Score=46.28 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=29.3
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCC
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 255 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 255 (350)
.-.++.|.|.+|+||||+|.++....-.. -..++|++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 34689999999999999999998763222 23566766554
No 291
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.99 E-value=0.034 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+++|+|++|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998764
No 292
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.98 E-value=0.027 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999874
No 293
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.96 E-value=0.036 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998864
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.96 E-value=0.036 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||.+.+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 479999999999999999998764
No 295
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.96 E-value=0.039 Score=44.78 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999864
No 296
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.96 E-value=0.031 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.-.+++|+|+.|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3478999999999999999998753
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.95 E-value=0.04 Score=43.52 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999764
No 298
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.92 E-value=0.095 Score=57.00 Aligned_cols=86 Identities=21% Similarity=0.133 Sum_probs=57.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKLQEELK 289 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 289 (350)
.-.++.|.|++|+||||||.++..... ..-..++|++....++.. .++.++..... ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 457899999999999999999987532 233478899888877653 14445443211 2345566666665
Q ss_pred HHc-CCceEEEEEeCCCC
Q 048163 290 KKL-SGKIFLLVLDDVWN 306 (350)
Q Consensus 290 ~~l-~~kr~LlVlDdv~~ 306 (350)
... +.+.-+||+|.+-.
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 34566999999943
No 299
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.85 E-value=0.038 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++|.|.||.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999764
No 300
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.85 E-value=0.042 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.|.||.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999864
No 301
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.84 E-value=0.039 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.|+||.|+|||||+..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 302
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.83 E-value=0.036 Score=47.25 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecCCCchHHHHHHHHh
Q 048163 212 DGEFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 212 ~~~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.....+|+|.|+.|+||||+++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999875
No 303
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.83 E-value=0.034 Score=48.79 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=60.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcccccc--------ccCceeEEEeCCCCCHHHHHH---H------------HHHHhC
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQD--------HFDLKAWTCVSDDFDVFRLTK---T------------ILISIV 271 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------~F~~~~wv~~~~~~~~~~~~~---~------------il~~l~ 271 (350)
-.++.|+|++|+|||||+..+........ .-..+++++..... ..+.. . ++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhhccCceE
Confidence 36899999999999999999875322110 01345677666543 22211 1 122222
Q ss_pred CCCC----CCCCCHHHHHHHHHHHcCCceEEEEEeCCCC--C-Ccc---cHhhhcCccCCC--CCCceEEEecCChhHH
Q 048163 272 PDQN----VDNHNLNKLQEELKKKLSGKIFLLVLDDVWN--E-NYN---DWDRLRPPFEAG--APGSKIIVTARNQEVA 338 (350)
Q Consensus 272 ~~~~----~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~-~~~---~~~~l~~~l~~~--~~gs~iivTtr~~~va 338 (350)
.... ....+.. ....+...+.+ .-+||||.+-. . +.. ....+...|... ..|+.||++|+....+
T Consensus 108 l~~~~~~~~~~ls~g-~~~~i~~l~~~-~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 108 IQPLIGSLPNIMAPE-WFDGLKRAAEG-RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp ECCCTTSCCCTTSHH-HHHHHHHHHTT-CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred EeecCCCCcccCCHH-HHHHHHHhcCC-CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 1111 0111222 23445555554 56899999844 1 111 113333333221 3478899998876654
No 304
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.79 E-value=0.094 Score=44.43 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=34.8
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHH
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILIS 269 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 269 (350)
.....|.|.|+.|+||||+++.+.+.......+.......-+......+.+++++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFK 75 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhC
Confidence 346789999999999999999998753321233333212222222334556666653
No 305
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.79 E-value=0.037 Score=49.19 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 212 DGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 212 ~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....++|+|+|-||+||||+|..+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH
Confidence 345789999999999999999988764
No 306
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.79 E-value=0.18 Score=47.45 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=52.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHH-hCCC-------------------
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILIS-IVPD------------------- 273 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~-l~~~------------------- 273 (350)
.-.++.|.|.+|+|||||+.++....... .-..++|++... +..++...++.. .+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~ 278 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTM 278 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 34689999999999999999998763221 123577777554 334444433221 1000
Q ss_pred --------C----CCCCCCHHHHHHHHHHHcC-CceEEEEEeCCC
Q 048163 274 --------Q----NVDNHNLNKLQEELKKKLS-GKIFLLVLDDVW 305 (350)
Q Consensus 274 --------~----~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~ 305 (350)
. .....+..++...+++... .+.-+||+|.+-
T Consensus 279 a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 279 AMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp HHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGG
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHH
Confidence 0 0012356666666666553 356699999983
No 307
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.77 E-value=0.11 Score=43.58 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.1
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
...|.|-|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.77 E-value=0.052 Score=43.44 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+...|.|+|..|+|||||.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 309
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.75 E-value=0.046 Score=43.55 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.1
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 457899999999999999998754
No 310
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.75 E-value=0.035 Score=52.01 Aligned_cols=100 Identities=11% Similarity=0.154 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccc--------cccC-ceeEEEeCCCCC-HHHHHHHHHH
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ--------DHFD-LKAWTCVSDDFD-VFRLTKTILI 268 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~~-~~~~~~~il~ 268 (350)
+.++.|..-. +-.-++|.|..|+|||+|+.++.+..... ++-+ .++++-+.+... +.+++.++..
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 3556555432 23456888999999999999998875431 1112 567777776554 4456666544
Q ss_pred HhCC-------CCCCCCCCHHH-----HHHHHHHHc---CCceEEEEEeCC
Q 048163 269 SIVP-------DQNVDNHNLNK-----LQEELKKKL---SGKIFLLVLDDV 304 (350)
Q Consensus 269 ~l~~-------~~~~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv 304 (350)
.-.. .+. +...... ..-.+.+++ +++..||++||+
T Consensus 211 ~g~~~rtvvv~~t~-d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKA-DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEET-TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2101 111 1112211 122344444 379999999999
No 311
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.75 E-value=0.085 Score=46.44 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++.+.|.............|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 455666665433222345678999999999999999999765
No 312
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.74 E-value=0.035 Score=49.07 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=27.1
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeC
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS 254 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 254 (350)
-.++.|.|++|+|||||++.+....... .-..++|++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc
Confidence 4689999999999999999988653221 11145566543
No 313
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.74 E-value=0.29 Score=45.92 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=34.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
.-.++.|.|.+|+|||+|+.++....... .-..++|++... +..++...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHH
Confidence 34688999999999999999988753221 123577777654 3445555444
No 314
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.69 E-value=0.04 Score=49.42 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+..++.|.|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999854
No 315
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.68 E-value=0.29 Score=46.34 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHH-HHHHhccccccccC-ceeEEEeCCCCC-HHHHHHHHHHHhCCCCC
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFD-LKAWTCVSDDFD-VFRLTKTILISIVPDQN 275 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~~~~ 275 (350)
+.++.|..-. +-..++|.|..|+|||+|+ ..+.+. .+-+ .++++-+.+..+ +.++..++...-.....
T Consensus 151 kaID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 3566665432 2356789999999999996 567664 2233 367888888764 44566665543212111
Q ss_pred C----CCCC--HHH-----HHHHHHHHc--CCceEEEEEeCC
Q 048163 276 V----DNHN--LNK-----LQEELKKKL--SGKIFLLVLDDV 304 (350)
Q Consensus 276 ~----~~~~--~~~-----~~~~l~~~l--~~kr~LlVlDdv 304 (350)
. ..++ ... ..-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 0 1111 111 111233333 689999999999
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.64 E-value=0.038 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.103 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+++|+|+.|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4569999999999999999999863
No 317
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.63 E-value=0.068 Score=50.73 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHH-HHHHhcccc----ccccC-ceeEEEeCCCCC-HHHHHHHHHHHhC
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLA-QLVYNDKQV----QDHFD-LKAWTCVSDDFD-VFRLTKTILISIV 271 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~ 271 (350)
+.++.|..-. +-..++|.|..|+|||+|| ..+.+.... .++-+ .++++-+.+..+ +.++.+.+...-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4566666432 3356789999999999994 566665321 12234 467888887664 4456666654221
Q ss_pred CCCCC----CCCC--HHH-----HHHHHHHHc--CCceEEEEEeCC
Q 048163 272 PDQNV----DNHN--LNK-----LQEELKKKL--SGKIFLLVLDDV 304 (350)
Q Consensus 272 ~~~~~----~~~~--~~~-----~~~~l~~~l--~~kr~LlVlDdv 304 (350)
..... ..++ ... ..-.+.+++ +++..||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 11100 1111 111 111233333 589999999999
No 318
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.63 E-value=0.085 Score=54.26 Aligned_cols=117 Identities=17% Similarity=0.051 Sum_probs=56.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcc--ccccccCce--eEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDK--QVQDHFDLK--AWTCVSDDFDVFRLTKTILISIVPDQN--VDNHNLNKLQEE 287 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~--~~~~~F~~~--~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~ 287 (350)
.-.+++|.|+.|.||||+.+.+.--. ...+.|-.. .-+..-. .++..++.... ........-...
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d---------~i~~~ig~~d~l~~~lStf~~e~~~ 731 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD---------CILARVGAGDSQLKGVSTFMAEMLE 731 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS---------EEEEECC---------CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH---------HHHHhcCchhhHHHhHhhhHHHHHH
Confidence 35789999999999999999982110 001112110 0000000 00001111000 011122222233
Q ss_pred HHHHc--CCceEEEEEeCCCCCC-cccHhhh----cCccCCCCCCceEEEecCChhHHHh
Q 048163 288 LKKKL--SGKIFLLVLDDVWNEN-YNDWDRL----RPPFEAGAPGSKIIVTARNQEVAAI 340 (350)
Q Consensus 288 l~~~l--~~kr~LlVlDdv~~~~-~~~~~~l----~~~l~~~~~gs~iivTtr~~~va~~ 340 (350)
+...+ ..++-||+||+.-... ..+-..+ ...+.. ..|+.+|++|+..+++..
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTAL 790 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGG
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHH
Confidence 33333 4677899999995432 1111122 222321 348899999999888764
No 319
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.59 E-value=0.11 Score=48.58 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCCeEEEEEeecCCCchHHHHHHHHh
Q 048163 211 NDGEFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 211 ~~~~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.....++..|.|++|.||||+.+..++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 346789999999999999999988765
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.56 E-value=0.036 Score=48.30 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999874
No 321
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.56 E-value=0.053 Score=43.94 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4566889999999999999999765
No 322
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.54 E-value=0.12 Score=44.25 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=32.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHH
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTIL 267 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 267 (350)
...|.|.|+.|+||||+++.+..... ...+.......-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999987633 23455344443332222334444444
No 323
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.50 E-value=0.04 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999765
No 324
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.49 E-value=0.053 Score=42.95 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998765
No 325
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.47 E-value=0.05 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 326
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.45 E-value=0.056 Score=44.08 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|..|+|||||.+.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999999999764
No 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.43 E-value=0.03 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.610 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999864
No 328
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.42 E-value=0.045 Score=44.04 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 329
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.41 E-value=0.056 Score=43.30 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 330
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.38 E-value=0.049 Score=45.44 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|++|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999865
No 331
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.044 Score=43.46 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.3
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999764
No 332
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.37 E-value=0.064 Score=42.90 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998765
No 333
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.36 E-value=0.053 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4577899999999999999998764
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.34 E-value=0.045 Score=43.26 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
--|.|+|..|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998765
No 335
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.34 E-value=0.067 Score=42.09 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|.+|+|||||.+.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999764
No 336
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.34 E-value=0.043 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999998754
No 337
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.34 E-value=0.046 Score=43.04 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
--|.|+|..|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.33 E-value=0.045 Score=49.90 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=33.4
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCC--CCCCceEEEecCChhHHHhcC
Q 048163 287 ELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEA--GAPGSKIIVTARNQEVAAIMG 342 (350)
Q Consensus 287 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~va~~~~ 342 (350)
.|.+.|-.+.=+|+||+--+. +...-..+...+.. ...|..||++|.+.+.+..++
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA 206 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHC
Confidence 456666677889999998432 11112223222211 134778999999988776553
No 339
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.33 E-value=0.058 Score=43.82 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|..|+|||||.+.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4467889999999999999999865
No 340
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.32 E-value=0.046 Score=43.12 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
--|.|+|..|+|||||.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999764
No 341
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.31 E-value=0.13 Score=43.31 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=33.3
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILI 268 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 268 (350)
..|.+-|+.|+||||+++.+....... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999998764322 3323333333332334456666665
No 342
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.30 E-value=0.046 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|..|+|||||.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999998765
No 343
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.30 E-value=0.06 Score=51.03 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=49.4
Q ss_pred eEEEEEeecCCCchHHHH-HHHHhccccccccC-ceeEEEeCCCCC-HHHHHHHHHHHhCCC-------CCCCCCC----
Q 048163 215 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFD-LKAWTCVSDDFD-VFRLTKTILISIVPD-------QNVDNHN---- 280 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~---- 280 (350)
-..++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+... +.++.+.+...-... +..+...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 356789999999999995 5777752 234 357777877654 345555554321111 1101100
Q ss_pred H----HHHHHHHHHHcCCceEEEEEeCC
Q 048163 281 L----NKLQEELKKKLSGKIFLLVLDDV 304 (350)
Q Consensus 281 ~----~~~~~~l~~~l~~kr~LlVlDdv 304 (350)
. -...+.++. +++..||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1 112333443 689999999998
No 344
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.27 E-value=0.045 Score=43.24 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-|.|+|.+|+|||||.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998643
No 345
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.26 E-value=0.07 Score=50.19 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=58.2
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhcccccc--ccCceeEEEeCCCCC-HHHHHHHHHHHhCCCCC
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD--HFDLKAWTCVSDDFD-VFRLTKTILISIVPDQN 275 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~ 275 (350)
+.++.|..-. +-.-++|.|..|+|||+|+.++..+..... .=+.++++-+.+... +.+++.++...-.....
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 3566665432 234567789999999999999988744311 113567777776553 45666676654211110
Q ss_pred C-----CCCC-H-----HHHHHHHHHHc---CCceEEEEEeCC
Q 048163 276 V-----DNHN-L-----NKLQEELKKKL---SGKIFLLVLDDV 304 (350)
Q Consensus 276 ~-----~~~~-~-----~~~~~~l~~~l---~~kr~LlVlDdv 304 (350)
. .... . ....-.+.+++ +++..||++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0 1111 1 11122333444 379999999998
No 346
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.26 E-value=0.077 Score=42.39 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4566889999999999999998754
No 347
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.24 E-value=0.052 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+..|+|+.|+|||||...++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 348
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.23 E-value=0.05 Score=43.04 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|..|+|||||.+.+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998754
No 349
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.19 E-value=0.049 Score=44.36 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999887754
No 350
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.16 E-value=0.057 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHh
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
...+|+|+|++|+|||||.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 351
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.16 E-value=0.05 Score=44.05 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-|.|+|.+|+|||||.+.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998765
No 352
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.16 E-value=0.05 Score=43.50 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999999754
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.14 E-value=0.049 Score=49.79 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=35.8
Q ss_pred HHHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCC--CCCCceEEEecCChhHHHhcC
Q 048163 286 EELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEA--GAPGSKIIVTARNQEVAAIMG 342 (350)
Q Consensus 286 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~va~~~~ 342 (350)
-.|.+.|..+.=+|++|+--+. +...-..+...|.. ...|..||++|.+-+++..++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 4566677788889999998432 11222233333332 134789999999988776543
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.09 E-value=0.052 Score=42.78 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEeecCCCchHHHHHHHHhc
Q 048163 218 IPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 218 i~I~G~gGvGKTtLa~~v~~~ 238 (350)
|.|+|.+|+|||+|.+.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998754
No 355
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.02 E-value=0.054 Score=42.79 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|..|+|||||.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 356
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.01 E-value=0.039 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+...|.|.|+.|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999988764
No 357
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.01 E-value=0.055 Score=44.24 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..|.|+|.+|+|||||.+.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 358
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.00 E-value=0.06 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999998764
No 359
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.99 E-value=0.049 Score=48.47 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.6
Q ss_pred EEEEeecCCCchHHHHHHHHh
Q 048163 217 VIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-|+|+|+.|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999775
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.94 E-value=0.058 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
--|.|+|..|+|||||.+.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999998754
No 361
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.94 E-value=0.054 Score=49.34 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=65.6
Q ss_pred EEEEEeecCCCchHHHHHHHHhccc-------ccc--------ccCceeEEEeC----CCCCHHH---------------
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQ-------VQD--------HFDLKAWTCVS----DDFDVFR--------------- 261 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~-------~~~--------~F~~~~wv~~~----~~~~~~~--------------- 261 (350)
.+++|+|+.|+|||||.+.+.--.. +.+ .-..+.+|.-. ...++.+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 5899999999999999999874311 000 00112333211 1112221
Q ss_pred ---HHHHHHHHhCCCCCC----CCCCHHH-HHHHHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEEE
Q 048163 262 ---LTKTILISIVPDQNV----DNHNLNK-LQEELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKIIV 330 (350)
Q Consensus 262 ---~~~~il~~l~~~~~~----~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iiv 330 (350)
-..++++.++..... ..-+-.+ -.-.|.+.|-.+.=+|+||+--+. +...-..+...+... ..|..||+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 233445554442210 1122222 223556666677889999998432 111222233333211 23678999
Q ss_pred ecCChhHHHhcC
Q 048163 331 TARNQEVAAIMG 342 (350)
Q Consensus 331 Ttr~~~va~~~~ 342 (350)
+|.+.+.+..++
T Consensus 202 vTHd~~~a~~~a 213 (355)
T 1z47_A 202 VTHDQEEALEVA 213 (355)
T ss_dssp ECSCHHHHHHHC
T ss_pred ECCCHHHHHHhC
Confidence 999987776553
No 362
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.92 E-value=0.064 Score=44.22 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.0
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.-|.|+|.+|+|||||.+.+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998753
No 363
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.91 E-value=0.047 Score=43.81 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|.+|+|||+|.+.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998764
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.91 E-value=0.059 Score=43.52 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999998764
No 365
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.91 E-value=0.11 Score=45.21 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 198 KDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.-+..||... .+....|.++||+|+|||.+|..+.+.
T Consensus 91 ~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3455666432 124567999999999999999999874
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.89 E-value=0.071 Score=42.18 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
--|.|+|.+|+|||||.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999853
No 367
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.88 E-value=0.08 Score=47.08 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=26.2
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 196 EKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|.+.+. -.+++|+|+.|+|||||.+.+. .
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH-H
Confidence 3566666653 2588999999999999999998 5
No 368
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.86 E-value=0.077 Score=42.33 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999999765
No 369
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.85 E-value=0.058 Score=43.57 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|..|+|||||.+.+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999865
No 370
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.84 E-value=0.28 Score=44.21 Aligned_cols=96 Identities=14% Similarity=-0.021 Sum_probs=58.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH-HcC
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKK-KLS 293 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~ 293 (350)
.++..++|+.|.||++.+..+..... ...|+....+..... .+..++.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN----------------------TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT----------------------CCHHHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC----------------------CCHHHHHHHhcCcCCc
Confidence 57889999999999999998876422 123332111122222 233333333222 123
Q ss_pred CceEEEEEeCCCC-CCcccHhhhcCccCCCCCCceEEEecC
Q 048163 294 GKIFLLVLDDVWN-ENYNDWDRLRPPFEAGAPGSKIIVTAR 333 (350)
Q Consensus 294 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr 333 (350)
+++-++|+|++.. .+...++.+...+....+++.+|+++-
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEES
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 5677888999866 455678888887765456777776653
No 371
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.83 E-value=0.066 Score=46.43 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
++|+|.|-||+||||+|..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57888899999999999988764
No 372
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.82 E-value=0.058 Score=43.90 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=20.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHh
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
..--|.|+|.+|+|||||.+.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999977764
No 373
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.82 E-value=0.08 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.82 E-value=0.057 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999874
No 375
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.81 E-value=0.08 Score=41.94 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999754
No 376
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.80 E-value=0.27 Score=47.13 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHH-HHHHHH
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVF-RLTKTI 266 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~i 266 (350)
+.++.|..-. +-..++|.|..|+|||+|+.++.+. .+-+.++++-+.+..+.. +++.++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4677776432 3467899999999999999998764 233578888888877644 444443
No 377
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.78 E-value=0.069 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHh
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
...+++|+|+.|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999874
No 378
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.77 E-value=0.068 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+|.|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 68999999999999999998764
No 379
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.77 E-value=0.07 Score=47.58 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 211 NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 211 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++....|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456889999999999999999998764
No 380
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.77 E-value=0.044 Score=45.41 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....++|+|+.|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988754
No 381
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.76 E-value=0.059 Score=49.17 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=66.0
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcccc-------cc--------ccCceeEEEeCC----CCCHH---------------
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQV-------QD--------HFDLKAWTCVSD----DFDVF--------------- 260 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~-------~~--------~F~~~~wv~~~~----~~~~~--------------- 260 (350)
-.+++|+|+.|+|||||.+.+.--... .+ .-..+.+|.-.. ..++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD 108 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 358999999999999999998743110 00 001123332110 01111
Q ss_pred ---HHHHHHHHHhCCCCCC----CCCCHHH-HHHHHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEE
Q 048163 261 ---RLTKTILISIVPDQNV----DNHNLNK-LQEELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKII 329 (350)
Q Consensus 261 ---~~~~~il~~l~~~~~~----~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ii 329 (350)
+-..++++.++..... ..-+-.+ -.-.|.+.|-.+.=+|+||+--+. +...-..+...+... ..|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (359)
T 2yyz_A 109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188 (359)
T ss_dssp HTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1234455555442210 1122222 223466666677889999998432 111122233333211 2367899
Q ss_pred EecCChhHHHhcC
Q 048163 330 VTARNQEVAAIMG 342 (350)
Q Consensus 330 vTtr~~~va~~~~ 342 (350)
++|++.+.+..++
T Consensus 189 ~vTHd~~~~~~~a 201 (359)
T 2yyz_A 189 YVTHDQAEAMTMA 201 (359)
T ss_dssp EEESCHHHHHHHC
T ss_pred EEcCCHHHHHHhC
Confidence 9999987765543
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.75 E-value=0.12 Score=43.97 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
-..|.|-|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.74 E-value=0.096 Score=42.14 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998865
No 384
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.73 E-value=0.066 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998754
No 385
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.73 E-value=0.085 Score=42.68 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999864
No 386
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.71 E-value=0.063 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999998765
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.71 E-value=0.06 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...++|+|+.|+|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998754
No 388
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.69 E-value=0.073 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++|+|.|-||+||||+|..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 468888999999999999988764
No 389
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.69 E-value=0.086 Score=44.68 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=19.7
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.|.+.|.||+||||++..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 45888999999999998888765
No 390
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.084 Score=43.69 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999998754
No 391
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.69 E-value=0.082 Score=43.02 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3467889999999999999998764
No 392
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.69 E-value=0.09 Score=43.17 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998754
No 393
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.68 E-value=0.061 Score=49.13 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcccc-------cc--------ccCceeEEEeCC----CCCHHH--------------
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDKQV-------QD--------HFDLKAWTCVSD----DFDVFR-------------- 261 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~~~-------~~--------~F~~~~wv~~~~----~~~~~~-------------- 261 (350)
-.+++|+|+.|+|||||.+.+.--... .+ .-..+.+|.-.. ..++.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE 108 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 368999999999999999998743110 00 001123332111 112211
Q ss_pred ----HHHHHHHHhCCCCCC----CCCCHHH-HHHHHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEE
Q 048163 262 ----LTKTILISIVPDQNV----DNHNLNK-LQEELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKII 329 (350)
Q Consensus 262 ----~~~~il~~l~~~~~~----~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ii 329 (350)
-..++++.++..... ..-+-.+ -.-.|.+.|-.+.=+|+||+--+. +...-..+...+... ..|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (362)
T 2it1_A 109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188 (362)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 233455555543211 1112222 223466666677889999987322 111122233333221 2367889
Q ss_pred EecCChhHHHhcC
Q 048163 330 VTARNQEVAAIMG 342 (350)
Q Consensus 330 vTtr~~~va~~~~ 342 (350)
++|++.+.+..++
T Consensus 189 ~vTHd~~~a~~~a 201 (362)
T 2it1_A 189 YVTHDQAEALAMA 201 (362)
T ss_dssp EEESCHHHHHHHC
T ss_pred EECCCHHHHHHhC
Confidence 9999987765543
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.63 E-value=0.087 Score=42.36 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|.+|+|||||.+.+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998754
No 395
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.63 E-value=0.063 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999874
No 396
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.63 E-value=0.065 Score=43.01 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|.+|+|||||.+.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 397
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.62 E-value=0.085 Score=42.35 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999999854
No 398
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.082 Score=42.32 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|..|+|||||.+.+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 399
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.58 E-value=0.064 Score=43.99 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
..-|.|+|.+|+|||||.+.+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999874
No 400
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.55 E-value=0.065 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.+.-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 36899999999999999999874
No 401
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.54 E-value=0.086 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|+|+|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999998754
No 402
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.07 Score=43.56 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|..|+|||||.+.+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999999764
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.068 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|.+|+|||||.+.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998765
No 404
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.52 E-value=0.073 Score=43.45 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.....|.|+|..|+|||||.+.+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998765
No 405
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.52 E-value=0.07 Score=44.33 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999999765
No 406
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.51 E-value=0.09 Score=42.27 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3467889999999999999999764
No 407
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.48 E-value=0.089 Score=43.30 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998765
No 408
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.47 E-value=0.054 Score=49.24 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=66.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccc-c--ccC------------ceeEEEeCC----CCCHHH---------------
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQ-D--HFD------------LKAWTCVSD----DFDVFR--------------- 261 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~--~F~------------~~~wv~~~~----~~~~~~--------------- 261 (350)
.+++|+|+.|+|||||.+.+.--.+.. + .|+ .+.+|.-.. ..++.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 589999999999999999987532100 0 000 122322110 112222
Q ss_pred HHHHHHHHhCCCCCC----CCCCHHH-HHHHHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEEEecC
Q 048163 262 LTKTILISIVPDQNV----DNHNLNK-LQEELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKIIVTAR 333 (350)
Q Consensus 262 ~~~~il~~l~~~~~~----~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr 333 (350)
-..++++.++..... ..-+-.+ -.-.|.+.|-.+.=+|+||+--+. +...-..+...+... ..|..||++|+
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 223455555443211 1112222 233566677777889999997432 111222233333211 23778999999
Q ss_pred ChhHHHhcC
Q 048163 334 NQEVAAIMG 342 (350)
Q Consensus 334 ~~~va~~~~ 342 (350)
+.+.+..++
T Consensus 187 d~~~~~~~a 195 (348)
T 3d31_A 187 DQTEARIMA 195 (348)
T ss_dssp CHHHHHHHC
T ss_pred CHHHHHHhC
Confidence 977665543
No 409
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.46 E-value=0.074 Score=43.72 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVY 236 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~ 236 (350)
...-|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999985
No 410
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.46 E-value=0.081 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHh
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
...+++|+|++|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999999864
No 411
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.44 E-value=0.07 Score=43.51 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|..|+|||||.+.+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456889999999999999998864
No 412
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.41 E-value=0.074 Score=44.20 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999765
No 413
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.38 E-value=0.4 Score=46.10 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCC-HHHHHHH
Q 048163 199 DVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VFRLTKT 265 (350)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~ 265 (350)
+.++.|..-. +-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+..+ +.+++.+
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4677776532 34678999999999999999998752 335678888887643 3344433
No 414
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.38 E-value=0.088 Score=44.38 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999999999765
No 415
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.38 E-value=0.11 Score=42.42 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|..|+|||||.+.+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999865
No 416
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.37 E-value=0.075 Score=43.74 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567899999999999999999865
No 417
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.35 E-value=0.074 Score=43.22 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999998765
No 418
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.35 E-value=0.073 Score=43.76 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998765
No 419
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.35 E-value=0.16 Score=45.04 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 197 KKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+++|.+.+..-.. .......|+|+|..|+|||||...+...
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 7 INKLQDVFNTLGS-DPLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp HHHHHHHTTTSSS-CTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC-CCCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4556665543322 1346788999999999999999999764
No 420
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.33 E-value=0.13 Score=41.82 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999999865
No 421
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.30 E-value=0.073 Score=42.81 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4577899999999999999998743
No 422
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.29 E-value=0.074 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...++|.|++|+||||+|+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 423
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.28 E-value=0.075 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=20.3
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||+|.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999977653
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.27 E-value=0.077 Score=43.16 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3466899999999999999999864
No 425
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.26 E-value=0.082 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+...|+|+|.+|+|||||.+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999865
No 426
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.26 E-value=0.12 Score=41.97 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|..|+|||||.+.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.25 E-value=0.24 Score=53.94 Aligned_cols=85 Identities=20% Similarity=0.132 Sum_probs=61.1
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHH
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNV----DNHNLNKLQEEL 288 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 288 (350)
++-++|-|+|+.|+||||||.++... .++.=...+|+.+.+..+..- ++.++.+... .+..-++..+.+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45589999999999999999999864 445567789998888777553 6666655432 334445556666
Q ss_pred HHHcC-CceEEEEEeCC
Q 048163 289 KKKLS-GKIFLLVLDDV 304 (350)
Q Consensus 289 ~~~l~-~kr~LlVlDdv 304 (350)
...++ +.--+||+|.|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 66663 56679999999
No 428
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.23 E-value=0.078 Score=43.29 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4567889999999999999999865
No 429
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.23 E-value=0.28 Score=45.16 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=30.4
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 190 VYGRETEKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
++|....+.++.+.+..-. ..... +.|.|..|+|||++|+.++..
T Consensus 139 ~ig~s~~m~~l~~~i~~~a---~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKIS---CAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHT---TCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhccHHhhHHHHHHHHhc---CCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 4555555666666554422 11233 489999999999999999864
No 430
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.21 E-value=0.096 Score=43.10 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|..|+|||||.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999998754
No 431
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.20 E-value=0.079 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
-.+++|+|+.|+|||||.+.+.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 36899999999999999999875
No 432
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.19 E-value=0.05 Score=49.59 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CcccHhhhcCccCCC--CCCceEEEecCChhHHHhcC
Q 048163 287 ELKKKLSGKIFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKIIVTARNQEVAAIMG 342 (350)
Q Consensus 287 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~va~~~~ 342 (350)
.|.+.|-.+.=+|+||+--+. +...-..+...+... ..|..||++|++.+.+..++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 466666677889999997432 222222333333221 23678999999987765543
No 433
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.19 E-value=0.43 Score=54.41 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=47.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKLSGK 295 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (350)
+-+.++|++|+|||++|+.+.... ..+ ..+.++++...+...+...+-..+.........-.. -.-.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~-------P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL-------PKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE-------EBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc-------CCCCCc
Confidence 578899999999999997776542 122 245677777777666655554443321100000000 000367
Q ss_pred eEEEEEeCCCC
Q 048163 296 IFLLVLDDVWN 306 (350)
Q Consensus 296 r~LlVlDdv~~ 306 (350)
++++.+||+.-
T Consensus 1337 ~~VlFiDEinm 1347 (2695)
T 4akg_A 1337 NLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEEETTTC
T ss_pred eEEEEeccccc
Confidence 88999999743
No 434
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.19 E-value=0.11 Score=42.29 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999998764
No 435
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.16 E-value=0.09 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...+|.++|++|+||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999764
No 436
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.15 E-value=0.1 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|+|+|..|+|||||.+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4578899999999999999999865
No 437
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.14 E-value=0.083 Score=43.57 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 438
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.13 E-value=0.069 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 439
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.13 E-value=0.16 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHh
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
..+++|+|+.|+|||||.+.+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 46999999999999999999986
No 440
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.12 E-value=0.19 Score=47.07 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHHhcCCC---C--CCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 192 GRETEKKDVVELLLRDDL---S--NDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~---~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
|.++-++.+.+.+..... . .......++|+|.+|+|||||.+.+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 455666677666653221 0 1234578999999999999999999765
No 441
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.12 E-value=0.082 Score=42.63 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999754
No 442
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.12 E-value=0.089 Score=43.10 Aligned_cols=23 Identities=26% Similarity=0.013 Sum_probs=19.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++.|+|+.|+||||++..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999666554
No 443
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.06 E-value=0.086 Score=47.90 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
-..++|+|+.|+|||||.+.+....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998863
No 444
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.05 E-value=0.12 Score=45.85 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=26.5
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 196 EKKDVVELLLRDDLSNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.++++..++. -.+++|+|+.|+|||||.+.+...
T Consensus 159 gv~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLK---------GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhccc
Confidence 3566666653 247899999999999999998764
No 445
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.03 E-value=0.12 Score=41.78 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|..|+|||||.+.+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 477899999999999999999854
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.03 E-value=0.085 Score=42.85 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|..|+|||||.+.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999765
No 447
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.02 E-value=0.08 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998754
No 448
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.96 E-value=0.1 Score=42.14 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.3
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
...-|.|+|.+|+|||||.+.+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35778999999999999999998653
No 449
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.95 E-value=0.084 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467889999999999999998754
No 450
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.92 E-value=0.22 Score=49.23 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=32.5
Q ss_pred EEEEeecCCCchHHHHH-HHHhccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 048163 217 VIPIIGMGGLGKTTLAQ-LVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILI 268 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~-~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 268 (350)
+..|+||+|.|||+.+. .|+.- +.. ...+.|+...+..+.+++..+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l--~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQA--VKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH--HHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH--HhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 66799999999995544 44432 111 34688888877777777776643
No 451
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.91 E-value=0.17 Score=49.59 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=26.8
Q ss_pred EEEEEeecCCCchHHHHHHHHhccc-cccccCceeEEEeCCC
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSDD 256 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~ 256 (350)
+.+.|.|++|+||||++..+..... ....-...+.+.++..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg 206 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCCh
Confidence 6889999999999999887765321 1111234566665543
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.89 E-value=0.088 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999864
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.86 E-value=0.11 Score=42.49 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|.+|+|||||.+.+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998653
No 454
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.86 E-value=0.077 Score=48.50 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999864
No 455
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.86 E-value=0.093 Score=43.42 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.0
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|..|+|||||.+.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 456
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.83 E-value=0.091 Score=44.24 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999998754
No 457
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.095 Score=42.69 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|..|+|||+|.+.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999865
No 458
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.80 E-value=0.11 Score=42.63 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4577899999999999999998754
No 459
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.77 E-value=0.077 Score=43.36 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=20.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|..|+|||||.+.+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998754
No 460
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.75 E-value=0.12 Score=41.82 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999998754
No 461
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.73 E-value=0.083 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.-++|+|+.|+|||||.+.++..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCc
Confidence 34999999999999999998753
No 462
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.69 E-value=0.14 Score=42.51 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHh
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999998765
No 463
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.69 E-value=0.13 Score=42.44 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||.+.+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 4567899999999999999998754
No 464
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.67 E-value=0.1 Score=43.17 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|..|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 465
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.67 E-value=0.097 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|.+|+|||||...+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999998754
No 466
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.65 E-value=0.1 Score=42.96 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.0
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..-|.|+|.+|+|||||.+.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998864
No 467
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.64 E-value=0.078 Score=43.12 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhcc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
..-|.|+|..|+|||||.+.+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987653
No 468
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.64 E-value=0.19 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||.+.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998764
No 469
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.63 E-value=0.062 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=19.9
Q ss_pred EEEEeecCCCchHHHHHHHHhc
Q 048163 217 VIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 217 vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-+.++|++|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5889999999999999998764
No 470
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.61 E-value=0.12 Score=44.82 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|+++|.+|+|||||.+.+...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3467899999999999999999764
No 471
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.59 E-value=0.43 Score=40.61 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=52.3
Q ss_pred EEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCC-C----C--CC-----CCCHHHHH
Q 048163 218 IPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPD-Q----N--VD-----NHNLNKLQ 285 (350)
Q Consensus 218 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~-~----~--~~-----~~~~~~~~ 285 (350)
+.|+|+.|.|||.+|..+.... -..++++. ....-+.+....+.. ++.. . . .. ....+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----STPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----CSCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 7789999999999998877642 12233333 221111222222222 2111 0 0 00 01223333
Q ss_pred HHHHHHcCCceEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEec
Q 048163 286 EELKKKLSGKIFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA 332 (350)
Q Consensus 286 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 332 (350)
.... .+..+--+||+|++.......+..+...++ ...++++|.
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333 334445699999997665456666655443 233555553
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.59 E-value=0.34 Score=40.35 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=31.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILI 268 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 268 (350)
+.|+|=|..|+||||+++.+.+.. ...+.. +...-+......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L--~~~~~v-~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL--VKDYDV-IMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH--TTTSCE-EEEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH--HCCCCE-EEeeCCCCChHHHHHHHHHh
Confidence 578899999999999999998763 233333 22222222233455555554
No 473
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.58 E-value=0.11 Score=45.01 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+.|+++|.+|+|||||.+.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998764
No 474
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.14 Score=42.96 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=20.7
Q ss_pred CeEEEEEeecCCCchHHHHHHHHh
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
...-|.|+|.+|+|||||.+.+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346689999999999999999874
No 475
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.51 E-value=0.12 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 476
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.50 E-value=0.13 Score=43.63 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=32.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHH
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTI 266 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 266 (350)
.-.++.|.|.+|+|||++|.++.... ....-..+++++... +..++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 34688999999999999999876431 122233456666554 344444443
No 477
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.48 E-value=0.15 Score=44.62 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999864
No 478
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.40 E-value=0.12 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998764
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.39 E-value=0.17 Score=41.89 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|.+|+|||||.+.+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3466899999999999999998764
No 480
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.37 E-value=0.089 Score=47.43 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=56.5
Q ss_pred EEEEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVFRLTKTILISIVPDQNVDNHNLNKLQEELKKKLSGK 295 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (350)
..++|+|+.|+|||||.+.+..... .-...+.+.-......... + ..+..-. . .-......+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~~--g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLFF--G--GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEEC--B--TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEEe--C--CChhHHHHHHHHhhhC
Confidence 5899999999999999999986421 1233444443221110000 0 0000000 0 1112344566777777
Q ss_pred eEEEEEeCCCCCCcccHhhhcCccCCCCCCceEEEecCChhHH
Q 048163 296 IFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQEVA 338 (350)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va 338 (350)
.=+|++|++-+ ...++.+.. +.. .+.-+|+||+..++.
T Consensus 241 p~ilildE~~~--~e~~~~l~~-~~~--g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 241 PDRIILGELRS--SEAYDFYNV-LCS--GHKGTLTTLHAGSSE 278 (330)
T ss_dssp CSEEEECCCCS--THHHHHHHH-HHT--TCCCEEEEEECSSHH
T ss_pred CCEEEEcCCCh--HHHHHHHHH-Hhc--CCCEEEEEEcccHHH
Confidence 88899999954 234443332 221 122467777776543
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.36 E-value=0.11 Score=43.39 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.--|.|+|.+|+|||||.+.+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998765
No 482
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.35 E-value=0.093 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+-.++.|+|+.|+|||||++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3478999999999999999999875
No 483
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.32 E-value=0.062 Score=43.28 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=11.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
...-|.|+|..|+|||||.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999988654
No 484
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.31 E-value=0.22 Score=48.35 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=22.6
Q ss_pred CCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 213 GEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 213 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+...+|.|.|+.|+||||+|+.+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 485
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.24 E-value=0.087 Score=44.02 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.4
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
....|.|+|..|+|||||.+.+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998753
No 486
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.22 E-value=0.28 Score=42.57 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.++|..|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999865
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.17 E-value=0.21 Score=40.68 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=24.9
Q ss_pred EEEeecCCCchHHHHHHHHhccccccccCceeEEEeCCCCC
Q 048163 218 IPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD 258 (350)
Q Consensus 218 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 258 (350)
+.|+|.+|+|||++|.++... -..++++.-...++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~------~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD------APQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS------CSSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc------CCCeEEEecCCCCC
Confidence 689999999999999998753 12356666555544
No 488
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.13 E-value=0.1 Score=48.71 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEeecCCCchHHHHHHHHhc
Q 048163 218 IPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 218 i~I~G~gGvGKTtLa~~v~~~ 238 (350)
|+|+|+.|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999864
No 489
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.12 E-value=0.099 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-.+++|+|+.|+|||||++.+..-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 368999999999999999998764
No 490
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.11 E-value=0.11 Score=43.17 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..--|.|+|..|+|||||.+.+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 4567899999999999999998754
No 491
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.08 E-value=0.15 Score=43.93 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999764
No 492
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.02 E-value=0.15 Score=45.20 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
+...|+|+|.+|+|||||.+.+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999764
No 493
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.01 E-value=0.15 Score=43.28 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=20.3
Q ss_pred CeEEEEEee-cCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIG-MGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G-~gGvGKTtLa~~v~~~ 238 (350)
..++|+|++ -||+||||+|..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 457888876 4999999999988764
No 494
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.93 E-value=0.16 Score=39.99 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEeecCCCchHHHHHHHHh
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYN 237 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~ 237 (350)
.+..|+|+.|+|||||...++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988763
No 495
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.91 E-value=0.13 Score=48.29 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.9
Q ss_pred eEEEEEeecCCCchHHHHHHHHhc
Q 048163 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 215 ~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
-..++|+|+.|+|||||.+.+...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999875
No 496
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.88 E-value=0.32 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.508 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
....|.|+|..|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999999999865
No 497
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.83 E-value=0.14 Score=49.01 Aligned_cols=26 Identities=8% Similarity=-0.088 Sum_probs=23.0
Q ss_pred CeEEEEEeecCCCchHHHHHHHHhcc
Q 048163 214 EFSVIPIIGMGGLGKTTLAQLVYNDK 239 (350)
Q Consensus 214 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 239 (350)
+..+|.+.|+.|+||||+++.+....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998763
No 498
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.80 E-value=0.1 Score=53.02 Aligned_cols=51 Identities=25% Similarity=0.231 Sum_probs=36.8
Q ss_pred cccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEeecCCCchHHHHHHHHhc
Q 048163 188 AKVYGRETEKKDVVELLLRDDL-------SNDGEFSVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
..+.|.++.++.|.+.+..... ..-.....+.++|++|+|||+||+.+...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 4567888888888776643211 01123456889999999999999999985
No 499
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.76 E-value=0.07 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999998653
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.68 E-value=0.13 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEEEeecCCCchHHHHHHHHhc
Q 048163 216 SVIPIIGMGGLGKTTLAQLVYND 238 (350)
Q Consensus 216 ~vi~I~G~gGvGKTtLa~~v~~~ 238 (350)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 79999999999999999998753
Done!