BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048164
(72 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|10172604|dbj|BAB01408.1| DNA topoisomerase VI, subunit A [Arabidopsis thaliana]
Length = 357
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 21 KLDVNIYHSISL-CCRMVMGWLRFLESGAKFDCINSPN 57
+ ++N+ H I L CCR+VMGWL+F E+G KFDC+NS N
Sbjct: 121 RYNLNVIHLIILLCCRLVMGWLKFREAGRKFDCLNSLN 158
>gi|255563518|ref|XP_002522761.1| meiotic recombination protein spo11, putative [Ricinus communis]
gi|223537999|gb|EEF39612.1| meiotic recombination protein spo11, putative [Ricinus communis]
Length = 373
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 30 ISLCCRMVMGWLRFLESGAKFDCINSPNDVSGRMIYT 66
+S+ +VMGWLRFLE+G KFDCINSPN+V I+
Sbjct: 136 VSVGTGLVMGWLRFLEAGRKFDCINSPNNVHPIPIHV 172
>gi|296089901|emb|CBI39720.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 36 MVMGWLRFLESGAKFDCINSPN 57
+VMGWLRFLE+G KFDCIN PN
Sbjct: 196 LVMGWLRFLEAGKKFDCINGPN 217
>gi|225461890|ref|XP_002264649.1| PREDICTED: meiotic recombination protein SPO11-1-like [Vitis
vinifera]
Length = 361
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 36 MVMGWLRFLESGAKFDCINSPN 57
+VMGWLRFLE+G KFDCIN PN
Sbjct: 142 LVMGWLRFLEAGKKFDCINGPN 163
>gi|224061220|ref|XP_002300376.1| predicted protein [Populus trichocarpa]
gi|222847634|gb|EEE85181.1| predicted protein [Populus trichocarpa]
Length = 365
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 36 MVMGWLRFLESGAKFDCINSP 56
+VMGWL+FLE+G KFDCI+SP
Sbjct: 139 LVMGWLQFLEAGRKFDCISSP 159
>gi|357494925|ref|XP_003617751.1| Meiotic recombination protein SPO11-1 [Medicago truncatula]
gi|355519086|gb|AET00710.1| Meiotic recombination protein SPO11-1 [Medicago truncatula]
Length = 439
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 36 MVMGWLRFLESGAKFDCINSPNDVSGRMIYT 66
+VMGW+RF+E FDCINSPN +Y
Sbjct: 173 LVMGWIRFVEGKKIFDCINSPNTAHPTPVYV 203
>gi|13383478|gb|AAK21002.1| AtSPO11-1 [Arabidopsis thaliana]
Length = 362
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 36 MVMGWLRFLESGAKFDCINSPN 57
+VMGWL+F E+G KFDC+NS N
Sbjct: 142 LVMGWLKFREAGRKFDCLNSLN 163
>gi|297834134|ref|XP_002884949.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330789|gb|EFH61208.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 362
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 36 MVMGWLRFLESGAKFDCINSPN 57
+VMGWL+F E+G KFDC+NS N
Sbjct: 142 LVMGWLKFREAGRKFDCLNSLN 163
>gi|15231162|ref|NP_187923.1| meiotic recombination protein SPO11-1 [Arabidopsis thaliana]
gi|75335900|sp|Q9M4A2.1|SPO11_ARATH RecName: Full=Meiotic recombination protein SPO11-1;
Short=AtSPO11-1
gi|7270975|emb|CAB81544.1| putative topoisomerase VIA [Arabidopsis thaliana]
gi|114050705|gb|ABI49502.1| At3g13170 [Arabidopsis thaliana]
gi|332641783|gb|AEE75304.1| meiotic recombination protein SPO11-1 [Arabidopsis thaliana]
Length = 362
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 36 MVMGWLRFLESGAKFDCINSPN 57
+VMGWL+F E+G KFDC+NS N
Sbjct: 142 LVMGWLKFREAGRKFDCLNSLN 163
>gi|449470686|ref|XP_004153047.1| PREDICTED: meiotic recombination protein SPO11-1-like, partial
[Cucumis sativus]
Length = 79
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 38 MGWLRFLESGAKFDCINSPN 57
MGWLRF E+G +FDC+ PN
Sbjct: 1 MGWLRFSEAGRRFDCLKKPN 20
>gi|357494931|ref|XP_003617754.1| Meiotic recombination protein SPO11 [Medicago truncatula]
gi|355519089|gb|AET00713.1| Meiotic recombination protein SPO11 [Medicago truncatula]
Length = 452
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 36 MVMGWLRFLESGAKFDCINSPN 57
+VMGW+RF+E FDCI+SP+
Sbjct: 193 LVMGWIRFVEGKKIFDCISSPD 214
>gi|356499439|ref|XP_003518548.1| PREDICTED: meiotic recombination protein SPO11-1-like [Glycine max]
Length = 367
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 36 MVMGWLRFLESGAKFDCINSPN 57
++MGW+RF E FDCI+SPN
Sbjct: 148 LIMGWIRFSEGERIFDCISSPN 169
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.331 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,081,571,049
Number of Sequences: 23463169
Number of extensions: 32919994
Number of successful extensions: 60064
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 60052
Number of HSP's gapped (non-prelim): 15
length of query: 72
length of database: 8,064,228,071
effective HSP length: 44
effective length of query: 28
effective length of database: 7,031,848,635
effective search space: 196891761780
effective search space used: 196891761780
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 69 (31.2 bits)