BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048164
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana
           GN=SPO11-1 PE=1 SV=1
          Length = 362

 Score = 40.0 bits (92), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 19/22 (86%)

Query: 36  MVMGWLRFLESGAKFDCINSPN 57
           +VMGWL+F E+G KFDC+NS N
Sbjct: 142 LVMGWLKFREAGRKFDCLNSLN 163


>sp|O12972|RFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Gallus
           gallus GN=RFNG PE=2 SV=2
          Length = 372

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 31  SLCCRMVMGWLRFLESGAKFDC-INSPNDVSGRMI 64
           +LCC+M + + +FLESG K+ C ++  N V+ R +
Sbjct: 168 ALCCKMSVEYDKFLESGQKWFCHVDDDNYVNPRTL 202


>sp|Q9Y644|RFNG_HUMAN Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Homo
           sapiens GN=RFNG PE=2 SV=3
          Length = 331

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 31  SLCCRMVMGWLRFLESGAKFDC-INSPNDVSGR 62
           +LCC+M + + +F+ESG K+ C ++  N V+ R
Sbjct: 122 ALCCKMSVEYDKFIESGRKWFCHVDDDNYVNAR 154


>sp|O09009|RFNG_MOUSE Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Mus
           musculus GN=Rfng PE=2 SV=1
          Length = 332

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 19  GRKLDVN---IYHSISLCCRMVMGWLRFLESGAKFDC 52
           GR ++ N   +    +LCC+M + + +FLESG K+ C
Sbjct: 108 GRMINTNCSAVRTRQALCCKMSVEYDKFLESGRKWFC 144


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.331    0.140    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,621,604
Number of Sequences: 539616
Number of extensions: 791398
Number of successful extensions: 1397
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1394
Number of HSP's gapped (non-prelim): 5
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)