Query 048164
Match_columns 72
No_of_seqs 15 out of 17
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 11:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d3y_A DNA topoisomerase VI A 96.9 0.00025 8.5E-09 51.7 1.0 42 26-67 68-114 (301)
2 2zbk_A Type II DNA topoisomera 96.7 0.00081 2.8E-08 51.0 2.7 38 27-64 153-190 (389)
3 2q2e_A Type II DNA topoisomera 95.7 0.0017 5.8E-08 48.4 0.0 40 26-65 139-184 (369)
4 1igq_A Transcriptional repress 39.6 14 0.00047 22.5 1.6 14 38-51 35-48 (62)
5 4a0t_A Tail fiber protein; vir 22.9 41 0.0014 24.8 1.9 28 39-67 196-225 (227)
6 2jmf_B Neurogenic locus notch 19.0 14 0.00047 19.3 -0.9 17 55-71 5-21 (26)
7 4ar0_A Type IV pilus biogenesi 17.6 91 0.0031 19.7 2.5 19 11-29 23-41 (128)
8 3kny_A Hypothetical protein BT 17.5 2.1E+02 0.0072 20.8 4.7 39 15-53 165-209 (218)
9 3ita_A D-alanyl-D-alanine carb 14.5 1.2E+02 0.0041 22.3 2.8 23 29-51 316-338 (352)
10 3qec_A Putative carbohydrate b 14.1 1.4E+02 0.0048 20.0 2.9 32 31-64 20-52 (150)
No 1
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=96.87 E-value=0.00025 Score=51.72 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=35.0
Q ss_pred EEeeeeeccc-eeEEEEEeee----cCeEEEeecCCCCcccceeeee
Q 048164 26 IYHSISLCCR-MVMGWLRFLE----SGAKFDCINSPNDVSGRMIYTF 67 (72)
Q Consensus 26 ~~nVvsv~kG-LVMGwLrF~E----ggr~iDCi~S~n~~~pIPV~ie 67 (72)
-.||++..|| +|+|.++|.+ +|+.|||.+....|.+||..++
T Consensus 68 ~L~i~a~~kG~lv~G~l~i~~~~~~~~~~id~~~~~~~g~~Ip~~~~ 114 (301)
T 1d3y_A 68 HLGFIPEEDGSSVVGPLKIIEETPEGELVVDCTKLGTGAYNIPNDVT 114 (301)
T ss_dssp GGTEECSSCCCEEESSCEEEEEETTEEEEEETTSCTTSEEECCSCCT
T ss_pred HCCeeeCCCceEEEeeeEEEEeecCCCcEEEeecCCCCceecCccHH
Confidence 3578899999 9999999976 5899999976667888887654
No 2
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=96.70 E-value=0.00081 Score=50.96 Aligned_cols=38 Identities=16% Similarity=0.015 Sum_probs=32.7
Q ss_pred EeeeeeccceeEEEEEeeecCeEEEeecCCCCccccee
Q 048164 27 YHSISLCCRMVMGWLRFLESGAKFDCINSPNDVSGRMI 64 (72)
Q Consensus 27 ~nVvsv~kGLVMGwLrF~Eggr~iDCi~S~n~~~pIPV 64 (72)
.|+++..||+|.|.++|.++|++|||......|..||-
T Consensus 153 L~I~a~~kGlv~G~l~i~~~~~~id~~~~g~~g~~Ip~ 190 (389)
T 2zbk_A 153 MLILSKEKGKVVGNLRIRSGNDVIDLSKTGHGAYAIEP 190 (389)
T ss_dssp HTCCCCCCCCBEESEEEEETTEEEESSCCTTCCBCCCS
T ss_pred cceEecCCcEEEeeeEEEeCCcEEEeecCCCCceeCCc
Confidence 57889999999999999999999999975556777774
No 3
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=95.73 E-value=0.0017 Score=48.38 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=29.3
Q ss_pred EEeeeeeccc-eeEEEEEeee----cCeEEEeec-CCCCcccceee
Q 048164 26 IYHSISLCCR-MVMGWLRFLE----SGAKFDCIN-SPNDVSGRMIY 65 (72)
Q Consensus 26 ~~nVvsv~kG-LVMGwLrF~E----ggr~iDCi~-S~n~~~pIPV~ 65 (72)
-.|+++..+| +|.|.++|.+ +|++|||.. ....+..||..
T Consensus 139 ~L~I~a~~kG~lv~G~l~i~~~~~~~~~~id~~~~~g~~g~~Ip~~ 184 (369)
T 2q2e_A 139 YFHMRPEEDGATMFGPIEITEQTKRGERNIHCQKDVGEGGYQIPFN 184 (369)
T ss_dssp GGTEECSSCCCCEECSCCCCCCSSCC----CCCC-CCSSCCCCCSC
T ss_pred HcceeccCCceEEEEeEEEEEEecCCCcEEEecccCCCCCeeCCcc
Confidence 4688899999 9999999976 689999996 34667788874
No 4
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=39.59 E-value=14 Score=22.54 Aligned_cols=14 Identities=29% Similarity=1.047 Sum_probs=11.8
Q ss_pred EEEEEeeecCeEEE
Q 048164 38 MGWLRFLESGAKFD 51 (72)
Q Consensus 38 MGwLrF~Eggr~iD 51 (72)
++|+.|.++|..|-
T Consensus 35 ~~wiKyED~G~e~E 48 (62)
T 1igq_A 35 YAWLKYEDDGQEFE 48 (62)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eEEEEEecCCcEEE
Confidence 57999999998774
No 5
>4a0t_A Tail fiber protein; viral protein, caudovirales, podoviridae, beta-helix, beta-S; HET: 1PE; 1.90A {Enterobacteria phage T7} PDB: 4a0u_A
Probab=22.94 E-value=41 Score=24.78 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEe--eecCeEEEeecCCCCcccceeeee
Q 048164 39 GWLRF--LESGAKFDCINSPNDVSGRMIYTF 67 (72)
Q Consensus 39 GwLrF--~Eggr~iDCi~S~n~~~pIPV~ie 67 (72)
|||+| ...||.|-=+ +++.+-|--+.++
T Consensus 196 GWLkFtIsnNGrtFrN~-~Dr~svPt~IlV~ 225 (227)
T 4a0t_A 196 GWLRFQIHSNGLGFKNI-ADSRSVPNAIMVE 225 (227)
T ss_dssp SEEEEEEETTTTEEEEE-EEESCCCCEEEEE
T ss_pred CEEEEEEecCCeeeccc-ccccCCCceeEee
Confidence 89999 7789999766 5555555555544
No 6
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=18.96 E-value=14 Score=19.35 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.7
Q ss_pred CCCCcccceeeeeeeec
Q 048164 55 SPNDVSGRMIYTFACIS 71 (72)
Q Consensus 55 S~n~~~pIPV~ie~~~~ 71 (72)
|||++-.-|-..|.||.
T Consensus 5 spntgakqppsyedcik 21 (26)
T 2jmf_B 5 SPNTGAKQPPSYEDCIK 21 (26)
T ss_pred CCCCCCCCCCCHHHHHH
Confidence 78999999999999884
No 7
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=17.59 E-value=91 Score=19.73 Aligned_cols=19 Identities=16% Similarity=0.534 Sum_probs=14.8
Q ss_pred eccCCCcccceeeeEEEee
Q 048164 11 LDSHSSYSGRKLDVNIYHS 29 (72)
Q Consensus 11 ~~~~~~~~~~~~~~~~~nV 29 (72)
+..-.+|+|+++.+|..|+
T Consensus 23 ~~g~~~~~G~~isLnf~da 41 (128)
T 4ar0_A 23 FEGAMGFTGRKISLDFQDV 41 (128)
T ss_dssp CSSCCCCSSCEEEEEEEEE
T ss_pred ccccccCCCCceEEEEeCC
Confidence 3455689999999998765
No 8
>3kny_A Hypothetical protein BT_3535; structural genomics, joint center for structural genomics, J protein structure initiative; 2.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=17.46 E-value=2.1e+02 Score=20.85 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCcccceeeeEEEeeeee--cccee----EEEEEeeecCeEEEee
Q 048164 15 SSYSGRKLDVNIYHSISL--CCRMV----MGWLRFLESGAKFDCI 53 (72)
Q Consensus 15 ~~~~~~~~~~~~~nVvsv--~kGLV----MGwLrF~Eggr~iDCi 53 (72)
|.|-|......--..+++ -+-|+ -|.|.|.+|.|++.-.
T Consensus 165 spylgndpsfsgassvsydkdkkliaascsgtlsfkdgsrkvevt 209 (218)
T 3kny_A 165 SPYLGNDPSFSGASSVSYDKDKKLIAASCSGTLSFKDGSRKVEVT 209 (218)
T ss_dssp CSSTTCCCEEEEEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCccCCCCCcCCccccccccccceeeecccceeeeccCCeeEEEE
Confidence 344444444444455555 33344 4889999999998653
No 9
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A*
Probab=14.47 E-value=1.2e+02 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.6
Q ss_pred eeeeccceeEEEEEeeecCeEEE
Q 048164 29 SISLCCRMVMGWLRFLESGAKFD 51 (72)
Q Consensus 29 Vvsv~kGLVMGwLrF~Eggr~iD 51 (72)
..++.+|-++|.+++..+|+.+-
T Consensus 316 ~APv~kG~~vG~l~~~~~g~~~~ 338 (352)
T 3ita_A 316 TAPLKKGQVVGTIDFQLNGKSIE 338 (352)
T ss_dssp ESCBCTTCEEEEEEEEETTEEEE
T ss_pred cCccCCCCEEEEEEEEECCEEEE
Confidence 35779999999999999998764
No 10
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}
Probab=14.14 E-value=1.4e+02 Score=20.00 Aligned_cols=32 Identities=22% Similarity=0.101 Sum_probs=23.1
Q ss_pred eeccceeEEEEEeee-cCeEEEeecCCCCccccee
Q 048164 31 SLCCRMVMGWLRFLE-SGAKFDCINSPNDVSGRMI 64 (72)
Q Consensus 31 sv~kGLVMGwLrF~E-ggr~iDCi~S~n~~~pIPV 64 (72)
..|++-|.|.+..+. +|.++.|.. .+...+|+
T Consensus 20 ~~G~~tI~G~a~~r~~~G~~~~c~g--~~V~L~P~ 52 (150)
T 3qec_A 20 QVGEGVINGDLYLTSASGAIQKGTN--TKVALEPA 52 (150)
T ss_dssp CCCCEEEEEEEEEECTTSCEEECCS--CEEEEEEC
T ss_pred CCCcceEEEEEEEECCCCCEecCCC--CEEEEEeC
Confidence 348889999999975 888889973 33444443
Done!