BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048165
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 17 NITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA 75
N +S +T L LANLT L++LD+ ++ I LAKL NLE+L ++N + L
Sbjct: 157 NFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLG 214
Query: 76 NLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
LTNL L L+GNQ L +G LA+L NL LDL + I+ + + T
Sbjct: 215 ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 261
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLTNL L L IT I L L NL L+LSSN + L+ LT+LQ L+ S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSS 160
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ LANL L+ LD+ ++ I + + T
Sbjct: 161 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L NL +++ +T I L L L +D+ N + LANLTNL L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKL--VDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
NQ L NL NL L+L I+ I + TS
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 152
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
++NL NL L L I+ I ++ L L+ L +N + LANLTN+ L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGH 358
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGIT 113
NQ LANL + L L D T
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWT 384
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
L+ L LQ L S+N +T L LANLT L++LD+ ++ I LAKL NLE+L
Sbjct: 147 LSGLTSLQQLSFSSN------QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 200
Query: 60 DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGI 118
++N + L LTNL L L+GNQ L +G LA+L NL LDL + I+ + +
Sbjct: 201 IATNNQI--SDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 119 QQFT 122
T
Sbjct: 258 SGLT 261
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLTNL L L IT I L L NL L+LSSN + L+ LT+LQ L S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSS 160
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ LANL L+ LD+ ++ I + + T
Sbjct: 161 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
LANL L+ LD+S+N ++ S+ LA LTNL+ L I+ I L L NL+ L
Sbjct: 169 LANLTTLERLDISSNK-VSDISV----LAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTL-GLANLPNLK 103
L+ N + LA+LTNL LDL+ NQ NL L GL L LK
Sbjct: 224 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L NL +++ +T I L L L +D+ N + LANLTNL L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKL--VDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
NQ L NL NL L+L I+ I + TS
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 152
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
++NL NL L L I+ I ++ L L+ L +N + LANLTN+ L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGH 358
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGIT 113
NQ LANL + L L D T
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWT 384
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
L+ L LQ L S+N +T L LANLT L++LD+ ++ I LAKL NLE+L
Sbjct: 147 LSGLTSLQQLSFSSNQ------VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 200
Query: 60 DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGI 118
++N + L LTNL L L+GNQ L +G LA+L NL LDL + I+ + +
Sbjct: 201 IATNNQI--SDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 119 QQFT 122
T
Sbjct: 258 SGLT 261
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLTNL L L IT I L L NL L+LSSN + L+ LT+LQ L S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSS 160
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ LANL L+ LD+ ++ I + + T
Sbjct: 161 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
LANL L+ LD+S+N ++ S+ LA LTNL+ L I+ I L L NL+ L
Sbjct: 169 LANLTTLERLDISSNK-VSDISV----LAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTL-GLANLPNLK 103
L+ N + LA+LTNL LDL+ NQ NL L GL L LK
Sbjct: 224 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L NL +++ +T I L L L +D+ N + LANLTNL L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKL--VDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
NQ L NL NL L+L I+ I + TS
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 152
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
++NL NL L L I+ I ++ L L+ L S+N + LANLTN+ L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKV--SDVSSLANLTNINWLSAGH 358
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGIT 113
NQ LANL + L L D T
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWT 384
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLT L++LD+ ++ I LAKL NLE+L ++N + L LTNL L L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 225
Query: 88 NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ L +G LA+L NL LDL + I+ + + T
Sbjct: 226 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 260
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLTNL L L IT I L L NL L+LSSN + L+ LT+LQ L+ G
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF-G 159
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ LANL L+ LD+ ++ I + + T
Sbjct: 160 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
LANL L+ LD+S+N ++ S+ LA LTNL+ L I+ I L L NL+ L
Sbjct: 168 LANLTTLERLDISSNK-VSDISV----LAKLTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTL-GLANLPNLK 103
L+ N + LA+LTNL LDL+ NQ NL L GL L LK
Sbjct: 223 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 266
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L NL +++ +T I L L L +D+ N + LANLTNL L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKL--VDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
NQ L NL NL L+L I+ I + TS
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 152
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
++NL NL L L I+ I ++ L L+ L +N + LANLTN+ L
Sbjct: 300 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGH 357
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGIT 113
NQ LANL + L L D T
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWT 383
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLT L++LD+ ++ I LAKL NLE+L ++N + L LTNL L L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 225
Query: 88 NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ L +G LA+L NL LDL + I+ + + T
Sbjct: 226 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 260
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLTNL L L IT I L L NL L+LSSN + L+ LT+LQ L+ G
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF-G 159
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ LANL L+ LD+ ++ I + + T
Sbjct: 160 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
LANL L+ LD+S+N ++ S+ LA LTNL+ L I+ I L L NL+ L
Sbjct: 168 LANLTTLERLDISSNK-VSDISV----LAKLTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTL-GLANLPNLK 103
L+ N + LA+LTNL LDL+ NQ NL L GL L LK
Sbjct: 223 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 266
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L NL +++ +T I L L L +D+ N + LANLTNL L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKL--VDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
NQ L NL NL L+L I+ I + TS
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 152
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
++NL NL L L I+ I ++ L L+ L S+N + LANLTN+ L
Sbjct: 300 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKV--SDVSSLANLTNINWLSAGH 357
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGIT 113
NQ LANL + L L D T
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWT 383
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLT L++LD+ ++ I LAKL NLE+L ++N + L LTNL L L+G
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 230
Query: 88 NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ L +G LA+L NL LDL + I+ + + T
Sbjct: 231 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 265
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLTNL L L IT I L L NL L+LSSN + L+ LT+LQ L G
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-G 164
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ LANL L+ LD+ ++ I + + T
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 199
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L NLTNL +L+L I+ I L+ L +L+ L + L+ LANLT L+ LD+S
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT---DLKPLANLTTLERLDISS 186
Query: 88 NQNLTTLGLANLPNLKTL 105
N+ LA L NL++L
Sbjct: 187 NKVSDISVLAKLTNLESL 204
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
LANL L+ LD+S+N ++ S+ LA LTNL+ L I+ I L L NL+ L
Sbjct: 173 LANLTTLERLDISSNK-VSDISV----LAKLTNLESLIATNNQISDITPLGILTNLDELS 227
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTL-GLANLPNLK 103
L+ N + LA+LTNL LDL+ NQ NL L GL L LK
Sbjct: 228 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L NL +++ +T I L L L +D+ N + LANLTNL L L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITPLKNLTKL--VDILMNNNQIADITPLANLTNLTGLTLF 120
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
NQ L NL NL L+L I+ I + TS
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 157
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
++NL NL L L I+ I ++ L L+ L +N + LANLTN+ L
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGH 362
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGIT 113
NQ LANL + L L D T
Sbjct: 363 NQISDLTPLANLTRITQLGLNDQAWT 388
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLT L++LD+ ++ I LAKL NLE+L ++N + L LTNL L L+G
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 229
Query: 88 NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ L +G LA+L NL LDL + I+ + + T
Sbjct: 230 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 264
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
LANLTNL L L IT I L L NL L+LSSN + L+ LT+LQ L G
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-G 163
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
NQ LANL L+ LD+ ++ I + + T
Sbjct: 164 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 198
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L NLTNL +L+L I+ I L+ L +L+ L + L+ LANLT L+ LD+S
Sbjct: 129 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT---DLKPLANLTTLERLDISS 185
Query: 88 NQNLTTLGLANLPNLKTL 105
N+ LA L NL++L
Sbjct: 186 NKVSDISVLAKLTNLESL 203
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
LANL L+ LD+S+N ++ S+ LA LTNL+ L I+ I L L NL+ L
Sbjct: 172 LANLTTLERLDISSNK-VSDISV----LAKLTNLESLIATNNQISDITPLGILTNLDELS 226
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTL-GLANLPNLK 103
L+ N + LA+LTNL LDL+ NQ NL L GL L LK
Sbjct: 227 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 270
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L NL +++ +T I L L L +D+ N + LANLTNL L L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITPLKNLTKL--VDILMNNNQIADITPLANLTNLTGLTLF 119
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
NQ L NL NL L+L I+ I + TS
Sbjct: 120 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 156
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
++NL NL L L I+ I ++ L L+ L ++N + LANLTN+ L
Sbjct: 304 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGH 361
Query: 88 NQNLTTLGLANLPNLKTLDLRDCGIT 113
NQ LANL + L L D T
Sbjct: 362 NQISDLTPLANLTRITQLGLNDQAWT 387
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 29 ANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
A+L + L G G+TTI+G+ L NL L+L N L L NLT + L+LSGN
Sbjct: 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGN 95
Query: 89 QNLTTLGLANLPNLKTLDLRDCGITTI 115
+A L ++KTLDL IT +
Sbjct: 96 PLKNVSAIAGLQSIKTLDLTSTQITDV 122
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 1 LANLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEA 58
L NL + L+LS N N+++ +A L ++K LDL IT + LA L NL+
Sbjct: 81 LKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 59 LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTIQG 117
L L N + + LA LTNLQ L + GN ++ L LANL L TL D I+ I
Sbjct: 134 LYLDLNQITN--ISPLAGLTNLQYLSI-GNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
Query: 118 I 118
+
Sbjct: 191 L 191
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
+A L+ ++ LDL TS +T + LA L+NL+ L LD IT I LA L NL+ L
Sbjct: 103 IAGLQSIKTLDL------TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156
Query: 60 DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGI 118
+ + L LANL+ L L N+ LA+LPNL + L++ I+ + +
Sbjct: 157 SIGNAQV--SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL 213
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 1 LANLRYLQVL--DLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEA 58
LA L LQVL DL+ NI+ LA LTNL+ L + ++ + LA L L
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177
Query: 59 LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGIT 113
L N + LA+L NL + L NQ LAN NL + L + IT
Sbjct: 178 LKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 24 TRLGLANLTN-LKKLDLDGC--------GITTIQGLAKLKNLEALDLSSNYYLHGSLEGL 74
T G +N+T+ + + DLDG G+TTI+G+ L NL L+L N L L
Sbjct: 30 TATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITD--LTPL 87
Query: 75 ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
NLT + L+LSGN +A L ++KTLDL IT +
Sbjct: 88 KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 128
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
+A L+ ++ LDL TS +T + LA L+NL+ L LD IT I LA L NL+ L
Sbjct: 109 IAGLQSIKTLDL------TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 162
Query: 60 DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGI 118
+ +N L LANL+ L L N+ LA+LPNL + L+D I+ + +
Sbjct: 163 SIGNNQV--NDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPL 219
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 1 LANLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEA 58
L NL + L+LS N N+++ +A L ++K LDL IT + LA L NL+
Sbjct: 87 LKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 139
Query: 59 LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGI 118
L L N + + LA LTNLQ L + NQ LANL L TL D I+ I +
Sbjct: 140 LYLDLNQITN--ISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPL 197
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 1 LANLRYL-----QVLDLSA--------NYNITSGSLTRL-GLANLTNLKKLDLDGCGITT 46
L NL YL Q+ D+S N I + +T + L NLTNL++L L+ I+
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124
Query: 47 IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLD 106
I LA L +L+L +N+ L L L+N T L L ++ ++ +ANL +L +L
Sbjct: 125 ISPLANLTKXYSLNLGANHNL-SDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLS 183
Query: 107 LRDCGITTIQGIQQFTS 123
L I I + TS
Sbjct: 184 LNYNQIEDISPLASLTS 200
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGS-LEGLANLTNL-----QVLD 84
L ++ KL + G + +IQG+ L NLE L+L+ N S L L LTNL ++ D
Sbjct: 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD 102
Query: 85 LSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
+S QNLT NL+ L L + I+ I + T
Sbjct: 103 ISALQNLT--------NLRELYLNEDNISDISPLANLT 132
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 28/144 (19%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
LANL L+L AN+N++ S L+N T L L + + + +A L +L +L
Sbjct: 128 LANLTKXYSLNLGANHNLSDLS----PLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLS 183
Query: 61 LSSNYYLHGSLEGLANLTNL--------QVLDLS-------------GNQNLTTLG-LAN 98
L NY + LA+LT+L Q+ D++ GN +T L LAN
Sbjct: 184 L--NYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLAN 241
Query: 99 LPNLKTLDLRDCGITTIQGIQQFT 122
L L L++ I+ I ++ T
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLT 265
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNY----------------YLH-- 68
G+ LTNL+ L+L+G IT I L+ L L L + +N YL+
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120
Query: 69 --GSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
+ LANLT L+L N NL+ L L+N L L + + + + I T
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLT 177
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 7 LQVLDLSANYNITSGSLTRLGLANL---TNLKKLDLDGCGITTIQGLA--KLKNLEALDL 61
++ LDLS N +T +G +L NL+ L L I TI+G A L +LE LDL
Sbjct: 28 MKSLDLSFN------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 62 SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANL-PNLKTLD-LRDCGITTIQGIQ 119
S N+ S L++L+ L+L GN TLG+ +L PNL L LR + T I+
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140
Query: 120 Q 120
+
Sbjct: 141 R 141
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 7 LQVLDLSANYNITSGSLTRLGLANL---TNLKKLDLDGCGITTIQGLA--KLKNLEALDL 61
++ LDLS N +T +G +L NL+ L L I TI+G A L +LE LDL
Sbjct: 54 MKSLDLSFN------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 62 SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANL-PNLKTLD-LRDCGITTIQGIQ 119
S N+ S L++L+ L+L GN TLG+ +L PNL L LR + T I+
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 166
Query: 120 Q 120
+
Sbjct: 167 R 167
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 48 QGLAKLK----NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
Q LA L+ N++ LDLS N S LA T L++L+LS N TL L +L L+
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83
Query: 104 TLDL 107
TLDL
Sbjct: 84 TLDL 87
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 43 GITTIQGLAKLKNLEALDLSSNYYLHGSLEGLAN-LTNLQVLDLSGNQ--NLTTL-GLAN 98
G+T+I L KL L+ L+LS N + G LE LA NL+ L+LSGN+ +L+T+ L
Sbjct: 58 GLTSISNLPKLNKLKKLELSENR-ISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKK 116
Query: 99 LPNLKTLDLRDCGITTIQGIQQ 120
L NLK+LDL +C +T + ++
Sbjct: 117 LENLKSLDLFNCEVTNLNAYRE 138
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 48 QGLAKLK----NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
Q LA L+ N++ LDLS N S LA T L++L+LS N TL L +L L+
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83
Query: 104 TLDL 107
TLDL
Sbjct: 84 TLDL 87
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLH---GSLEGLANLTNLQVLD 84
L NLK L+L C I + L L LE L++S N++ GS GL++L L V++
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 21 GSLTRL------GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNY---YLHGSL 71
G L RL L+NL+ L+L C + I L L L+ LDLS N+ GS
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 72 EGLANL-------TNLQVLDLSGNQNLTTLGLANL 99
+GL +L + +QV++ + NL +L NL
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 3 NLRYLQVLDLSANYNIT---SGSLTRLGLANLTN-----LKKLDLDGCGITTIQGLAKLK 54
+L + Q+ DLS ++T S+ R L NL L +L LD + L LK
Sbjct: 69 HLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLK 128
Query: 55 NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
NLE L + +N S+ L L+ L+VLDL GN+ T GL L + +DL
Sbjct: 129 NLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
L +L+ L++L + N S+ LG L+ L+ LDL G IT GL +LK + +D
Sbjct: 124 LIHLKNLEILSIRNN---KLKSIVMLGF--LSKLEVLDLHGNEITNTGGLTRLKKVNWID 178
Query: 61 LS 62
L+
Sbjct: 179 LT 180
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYY--LHG--------------- 69
G+ TNLK+L L I+ + L L LE L ++ N L+G
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNE 117
Query: 70 --SLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGI 118
+ L +L NL++L + N+ + + L L L+ LDL IT G+
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGL 168
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 27 GLANLTNLKKLDLDGCGITT--------------IQGLAKLKNLEALDLSSNYYLHGSLE 72
+A+L L++L + C T QGL L++L L+ + L S+
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR-LEWTGIRSLPASIA 203
Query: 73 GLANLTNLQVLDLSGNQNLTTLGLA--NLPNLKTLDLRDC 110
L NL +L++ N L+ LG A +LP L+ LDLR C
Sbjct: 204 NLQNLKSLKI----RNSPLSALGPAIHHLPKLEELDLRGC 239
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLA--NLTNLKKLDLDGCGI-----TTIQGLAKL 53
+ANL+ L+ L I + L+ LG A +L L++LDL GC G A L
Sbjct: 202 IANLQNLKSL------KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 54 KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG--LANLP 100
K L D S+ L + LT L+ LDL G NL+ L +A LP
Sbjct: 256 KRLILKDCSNLLTLPLDIH---RLTQLEKLDLRGCVNLSRLPSLIAQLP 301
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 43 GITTIQGLAKLKNLEALDLSSNYYLHGSLEGLAN-LTNLQVLDLSGNQ--NLTTL-GLAN 98
G+T+I L KL L+ L+LS N + G LE LA NL L+LSGN+ +L+T+ L
Sbjct: 53 GLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111
Query: 99 LPNLKTLDLRDCGITTIQGIQQ 120
L NLK+LDL +C +T + ++
Sbjct: 112 LENLKSLDLFNCEVTNLNDYRE 133
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 2 ANLRYLQVLD-LSANY---NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA-----K 52
++L+ QV D L N N+T L RL AN T +L G TI L K
Sbjct: 17 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 53 LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN--QNLTTLGLANLPNLKTLDLRDC 110
L L+ L+L N S + A TNL L L N Q + NL TLDL
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Query: 111 GITTIQ 116
G+++ +
Sbjct: 137 GLSSTK 142
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS 63
L Y + L L+ N SL RL L + LK +D ++ L+NL LDLS+
Sbjct: 442 LSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVD------SSPSPFQPLRNLTILDLSN 494
Query: 64 NYYLHGSLEGLANLTNLQVLDLSGN 88
N + + + L L L++LDL N
Sbjct: 495 NNIANINDDMLEGLEKLEILDLQHN 519
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 2 ANLRYLQVLD-LSANY---NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA-----K 52
++L+ QV D L N N+T L RL AN T +L G TI L K
Sbjct: 12 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 53 LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN--QNLTTLGLANLPNLKTLDLRDC 110
L L+ L+L N S + A TNL L L N Q + NL TLDL
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Query: 111 GITTIQ 116
G+++ +
Sbjct: 132 GLSSTK 137
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS 63
L Y + L L+ N SL RL L + LK +D ++ L+NL LDLS+
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVD------SSPSPFQPLRNLTILDLSN 489
Query: 64 NYYLHGSLEGLANLTNLQVLDLSGN 88
N + + + L L L++LDL N
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHN 514
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 2 ANLRYLQVLD-LSANY---NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA-----K 52
++L+ QV D L N N+T L RL AN T +L G TI L K
Sbjct: 22 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 53 LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN--QNLTTLGLANLPNLKTLDLRDC 110
L L+ L+L N S + A TNL L L N Q + NL TLDL
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Query: 111 GITTIQ 116
G+++ +
Sbjct: 142 GLSSTK 147
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS 63
L Y + L L+ N SL RL L + LK +D ++ L+NL LDLS+
Sbjct: 447 LSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVD------SSPSPFQPLRNLTILDLSN 499
Query: 64 NYYLHGSLEGLANLTNLQVLDLSGN 88
N + + + L L L++LDL N
Sbjct: 500 NNIANINDDMLEGLEKLEILDLQHN 524
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 68 HGSLEGLANLTNLQVLDLSGNQNLTTLG-------LANLPNLKTLDLRDC 110
H LEGLA L+VLDL N T LG L + PNL+ L L DC
Sbjct: 205 HLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC 253
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 68 HGSLEGLANLTNLQVLDLSGNQNLTTLG-------LANLPNLKTLDLRDC 110
H LEGLA L+VLDL N T LG L + PNL+ L L DC
Sbjct: 206 HLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC 254
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 20/84 (23%)
Query: 33 NLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEG-------LANLTNLQVLDL 85
N++KLDL + L KL+NL+ LDLS H +E L NL +LQ L+L
Sbjct: 334 NMRKLDLG------TRCLEKLENLQKLDLS-----HSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 86 SGNQN--LTTLGLANLPNLKTLDL 107
S N+ L P L+ LD+
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDV 406
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLT-NLKKLDLDGCGITTI--QGLAKLKNLE 57
LA L+ L+ L+L N + GS+++ L + +L+ L L C + +I Q L+N+
Sbjct: 444 LAGLQDLRHLNLQGN-SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVN 502
Query: 58 ALDLSSNYYLHGSLEGLANLTNL 80
LDLS N S++ L++L L
Sbjct: 503 HLDLSHNSLTGDSMDALSHLKGL 525
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 34 LKKLDLDGCGITTIQGLA--KLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
LK L L GI+ ++ + L+NLE+L L SN+ +L NL+VLD N
Sbjct: 106 LKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNN 162
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYY 66
L+ LDLS N IT S LGL L +L + ++ L+NL LD+S + +
Sbjct: 375 LKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTH 432
Query: 67 LHGSLEGLAN-LTNLQVLDLSGN---QNLTTLGLANLPNLKTLDLRDC 110
+ G+ N L++L+VL ++GN +N L NL LDL C
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSNYYLHGSL-EGLANLTNLQVL 83
+ L++L+KL + +++ LK L+ L+++ N L E +NLTNL+ L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 84 DLSGNQ 89
DLS N+
Sbjct: 155 DLSSNK 160
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 50 LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
+L+NL LDLS S +L++LQVL+++ NQ
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 16 YNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGL 74
+NI+S + + L++LDL ++ + GL L L+ L LS+N + +
Sbjct: 267 FNISSNTF-----HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 75 ANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITT 114
+N +L L + GN LG L NL NL+ LDL I T
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 4 LRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALD 60
L LQ L+L N+ G++ + L L L+ L L C +++I LK + +D
Sbjct: 448 LPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG--LANLPNLKTLDLR----DCGITT 114
LS N S+E L++L + L+L+ N L L L +T++LR DC +
Sbjct: 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565
Query: 115 IQGIQQF 121
I ++ +
Sbjct: 566 IYFLEWY 572
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 28 LANLTNLKKLDLDGCGITTIQ----GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83
L NL NL++LDL I T L L +L++L+LS N L E L++L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 84 DLS 86
DL+
Sbjct: 406 DLA 408
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 21 GSLTRL------GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNY---YLHGSL 71
G L RL L NL+ L+L C + I L L LE L+LS N GS
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 72 EGLANLTNLQVL 83
+GL +L L ++
Sbjct: 199 QGLTSLRKLWLM 210
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 21 GSLTRL------GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNY---YLHGSL 71
G L RL L NL+ L+L C + I L L LE L+LS N GS
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 72 EGLANLTNLQVL 83
+GL +L L ++
Sbjct: 199 QGLTSLRKLWLM 210
>pdb|2RJO|A Chain A, Crystal Structure Of Twin-Arginine Translocation Pathway
Signal Protein From Burkholderia Phytofirmans
Length = 332
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 41 GCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA--NLTNLQVLDLSGNQ-NLTTLG-- 95
G +TTI K K+L D + NY H S +G+A T Q+ G + + LG
Sbjct: 88 GAYVTTIWN--KPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSXGGKGGVVALGGI 145
Query: 96 LANLPNLKTLDLRDCGITTIQGIQ 119
+N+P ++ D + GIQ
Sbjct: 146 FSNVPAIERKAGLDAALKKFPGIQ 169
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSN 64
++ LDLS N IT ++ L NL+ L L GI TI+ + L +LE LDLS N
Sbjct: 28 VKSLDLSNN-RITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
Query: 65 YYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANL 99
Y + S L++L L+L GN TLG +L
Sbjct: 85 YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSL 118
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLH------------------ 68
G+ L N+ KL L+G +T I+ LA LKNL L L N
Sbjct: 61 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 120
Query: 69 --GSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
+ GL +L L+ L L N+ L+ L L TL L D I I + + T
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTK 177
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANL 77
+ LA LT L+ L L I+ ++ L LKNL+ L+L S L+ + +NL
Sbjct: 170 VPLARLTKLQNLYLSKNHISDLRALRGLKNLDVLELFSQEALNKPINHQSNL 221
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSN 64
++ LDLS N IT ++ L NL+ L L GI TI+ + L +LE LDLS N
Sbjct: 54 VKSLDLSNN-RITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 65 YYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANL 99
Y + S L++L L+L GN TLG +L
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSL 144
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ LA LKNL L L N S L+ +
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 123 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 157
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANL 77
+ LA LT L+ L L I+ ++ LA LKNL+ L+L S L+ + +NL
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 223
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ LA LKNL L L N S L+ +
Sbjct: 61 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 120
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 121 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 155
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANL 77
+ LA LT L+ L L I+ ++ LA LKNL+ L+L S L+ + +NL
Sbjct: 170 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 221
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ LA LKNL L L N S L+ +
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 123 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 157
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANL 77
+ LA LT L+ L L I+ ++ LA LKNL+ L+L S L+ + +NL
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 223
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ LA LKNL L L N S L+ +
Sbjct: 58 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 117
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 118 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 152
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANL 77
+ LA LT L+ L L I+ ++ L LKNL+ L+L S L+ + +NL
Sbjct: 167 VPLACLTKLQNLYLSKNHISDLRALCGLKNLDVLELFSQEALNKPINHQSNL 218
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 33 NLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLT 92
+++ L L +T + L +L + LDLS N L LA L L+VL S N
Sbjct: 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN 500
Query: 93 TLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G+ANLP L+ L L + + IQ S
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD C +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 33 NLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLT 92
+++ L L +T + L +L + LDLS N L LA L L+VL S N
Sbjct: 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN 500
Query: 93 TLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G+ANLP L+ L L + + IQ S
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD C +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 23 LTRLGLANLTNLKKLDLDGCGITTIQ-----GLAKLKNLEALDLSSNYYLHGSLEGLANL 77
L +N + L+ LDL C I TI+ GL L NL + GS GL +L
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Query: 78 TNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
NL ++ + +L + + L LK L++
Sbjct: 102 ENLVAVE-TKLASLESFPIGQLITLKKLNV 130
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL 85
AN TNL LDL C + I L L+ L++S N L L +L LD
Sbjct: 464 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 523
Query: 86 SGNQNLTTLG-LANLP-NLKTLDLRDCGITTIQGIQQFTSY 124
S N+ T+ G L + P +L +L + + I Q+F +
Sbjct: 524 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 564
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD C +T +Q L L LDLS N L G L L VLD+S
Sbjct: 52 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 110
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 111 NR-LTSLPLGAL 121
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD C +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 23 LTRLGLANLTNLKKLDLDGCGITTIQ-----GLAKLKNLEALDLSSNYYLHGSLEGLANL 77
L +N + L+ LDL C I TI+ GL L NL + GS GL +L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 78 TNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
NL ++ + +L + + L LK L++
Sbjct: 107 ENLVAVE-TKLASLESFPIGQLITLKKLNV 135
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 28 LANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL 85
AN TNL LDL C + I L L+ L++S N L L +L LD
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 86 SGNQNLTTLG-LANLP-NLKTLDLRDCGITTIQGIQQFTSY 124
S N+ T+ G L + P +L +L + + I Q+F +
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 56 LEALDLSSNYYLHGSLEGLA-NLTNLQVLDLSGNQNLTTLGLANLP----NLKTLDLRDC 110
LE + L LE +A + N +VL LS + +T GLA + NLK LDLR+
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166
Query: 111 GITTIQG 117
+ + G
Sbjct: 167 DVDDVSG 173
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD C +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD C +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS 63
L +LQVL L+ NY SL ++LT L+ L L+ +T + NLE LD+S
Sbjct: 479 LSHLQVLYLNHNY---LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535
Query: 64 NYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPN 101
N L + + +L+ VLD++ N+ + L+ N
Sbjct: 536 NQLLAPNPDVFVSLS---VLDITHNKFICECELSTFIN 570
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 29/123 (23%)
Query: 24 TRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81
T GLA ++++ LDL + ++ LK+L+ L+L+ N + E L NLQ
Sbjct: 259 TFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 82 VLDLSGN--QNLTTLGLANLPN------------------------LKTLDLRDCGITTI 115
VL+LS N L + LP L+TLDLRD +TTI
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Query: 116 QGI 118
I
Sbjct: 378 HFI 380
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD C +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 11 DLSANY---NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAK-----LKNLEALDLS 62
DL +N N+T L RL N T +L + G +I L L L+ L+L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 63 SNYYLHGSLEGLANLTNLQVLDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
N S + TNL LDL N + + N NL LDL G+++ +
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTK 137
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS 63
L Y + L LS + SL RL L + LK +D+ + L+NL LDLS+
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVA-LKNVDI------SPSPFRPLRNLTILDLSN 489
Query: 64 NYYLHGSLEGLANLTNLQVLDLSGN 88
N + + + L L NL++LD N
Sbjct: 490 NNIANINEDLLEGLENLEILDFQHN 514
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 25/130 (19%)
Query: 4 LRYLQVLDLSANYNITSGSLTRLGLAN-LTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
L L+VLDLSAN +I+ ++ L++ LK L + G I+ +++ NLE LD+S
Sbjct: 150 LNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 63 SNYYLHG------------------SLEG-----LANLTNLQVLDLSGNQNLTTLGLANL 99
SN + G L G ++ T L++L++S NQ + + L
Sbjct: 209 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 268
Query: 100 PNLKTLDLRD 109
+L+ L L +
Sbjct: 269 KSLQYLSLAE 278
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLK--KLDLDGCGITTIQGLAKLKNLEA 58
L+N L L LS NY SG++ L +L+ L+ KL L+ Q L +K LE
Sbjct: 414 LSNCSELVSLHLSFNY--LSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 59 LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
L L N GL+N TNL + LS N+
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 4 LRYLQVLD-LSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT--TIQGLAKLKNLEALD 60
L Y++ L+ L ++N +G + GL+N TNL + L +T + + +L+NL L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGN 88
LS+N + L + +L LDL+ N
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 7 LQVLDLSANYNITSGSLTRL-GLANLTNLKKLD-----LDGCGITTIQGLAKLKNLEALD 60
L LDLS N SG +T L L + + LK L+ LD G + G KL +LE LD
Sbjct: 102 LTSLDLSRNS--LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLD 157
Query: 61 LSSNYYLHGSLEGLA---NLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT 114
LS+N ++ G L+ L +SGN+ + ++ NL+ LD+ +T
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 214
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 25/130 (19%)
Query: 4 LRYLQVLDLSANYNITSGSLTRLGLAN-LTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
L L+VLDLSAN +I+ ++ L++ LK L + G I+ +++ NLE LD+S
Sbjct: 147 LNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 205
Query: 63 SNYYLHG------------------SLEG-----LANLTNLQVLDLSGNQNLTTLGLANL 99
SN + G L G ++ T L++L++S NQ + + L
Sbjct: 206 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 265
Query: 100 PNLKTLDLRD 109
+L+ L L +
Sbjct: 266 KSLQYLSLAE 275
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLK--KLDLDGCGITTIQGLAKLKNLEA 58
L+N L L LS NY SG++ L +L+ L+ KL L+ Q L +K LE
Sbjct: 411 LSNCSELVSLHLSFNY--LSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 59 LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
L L N GL+N TNL + LS N+
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 4 LRYLQVLD-LSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT--TIQGLAKLKNLEALD 60
L Y++ L+ L ++N +G + GL+N TNL + L +T + + +L+NL L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 61 LSSNYYLHGSLEGLANLTNLQVLDLSGN 88
LS+N + L + +L LDL+ N
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 7 LQVLDLSANYNITSGSLTRL-GLANLTNLKKLD-----LDGCGITTIQGLAKLKNLEALD 60
L LDLS N SG +T L L + + LK L+ LD G + G KL +LE LD
Sbjct: 99 LTSLDLSRNS--LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLD 154
Query: 61 LSSNYYLHGSLEGLA---NLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT 114
LS+N ++ G L+ L +SGN+ + ++ NL+ LD+ +T
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 211
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANL 77
+ LA LT L+ L L I+ ++ LA LKNL+ L+L S L+ + +NL
Sbjct: 192 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 243
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 44 ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPN 101
I ++QG+ L N+ L L N LH + L LTNL L L+GNQ L +LPN
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNK-LH-DISALKELTNLTYLILTGNQ------LQSLPN 102
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ L LKNL L L N S L+ +
Sbjct: 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 120 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 154
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANL 77
+ LA LT L+ L L I+ ++ LA LKNL+ L+L S L+ + +NL
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 220
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 44 ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPN 101
I ++QG+ L N+ L L N LH + L LTNL L L+GNQ L +LPN
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNK-LH-DISALKELTNLTYLILTGNQ------LQSLPN 102
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 41 GCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLP 100
G IT +Q AKLKNLEA D SLEG +N L +L LT L +P
Sbjct: 907 GDSITAVQ--AKLKNLEAFDGECQ-----SLEGQSNSDLLSIL-----AQLTELNYNGVP 954
Query: 101 NL 102
L
Sbjct: 955 EL 956
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 69
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ L LKNL L L N S L+ +
Sbjct: 81 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 140
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
G ++ GL +LP L++L L + IT I + + T
Sbjct: 141 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLT 174
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 70
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ L LKNL L L N S L+ +
Sbjct: 81 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 140
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 141 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 175
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ L LKNL L L N S L+ +
Sbjct: 81 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 140
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 141 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 175
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
G+ L N+ KL L+G +T I+ L LKNL L L N S L+ +
Sbjct: 58 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 117
Query: 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
G ++ GL +LP L++L L + IT I + + T
Sbjct: 118 GISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTK 152
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 50 LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLD- 106
+L+NL LDLS S +L++LQVL++S N +L T L +L+ LD
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 107 -LRDCGITTIQGIQQFTS 123
L + Q +Q F S
Sbjct: 526 SLNHIMTSKKQELQHFPS 543
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSNYYLHGSL-EGLANLTNLQVL 83
+ L++L+KL + +++ LK L+ L+++ N L E +NLTNL+ L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 84 DLSGNQ 89
DLS N+
Sbjct: 155 DLSSNK 160
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 41 GCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLP 100
G IT +Q AKLKNLEA D SLEG +N L +L LT L +P
Sbjct: 915 GDSITAVQ--AKLKNLEAFDGECQ-----SLEGQSNSDLLSIL-----AQLTELNYNGVP 962
Query: 101 NL 102
L
Sbjct: 963 EL 964
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 92
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 50 LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLD- 106
+L+NL LDLS S +L++LQVL++S N +L T L +L+ LD
Sbjct: 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549
Query: 107 -LRDCGITTIQGIQQFTS 123
L + Q +Q F S
Sbjct: 550 SLNHIMTSKKQELQHFPS 567
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 27 GLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSNYYLHGSL-EGLANLTNLQVL 83
+ L++L+KL + +++ LK L+ L+++ N L E +NLTNL+ L
Sbjct: 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178
Query: 84 DLSGNQ 89
DLS N+
Sbjct: 179 DLSSNK 184
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde
Oxidoreductase From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 18 ITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLE 72
I G + R A +T +K++ DG ITTI+G+ + +NL L + + LHG +
Sbjct: 51 ILDGKVVR---ACVTKMKRV-ADGAQITTIEGVGQPENLHPLQKA--WVLHGGAQ 99
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
NL L+VLDLS N+ G + LGL NLK+L LD + ++ +L +L+
Sbjct: 343 FENLDKLEVLDLSYNHIRALGDQSFLGLP---NLKELALDTNQLKSVPDGIFDRLTSLQK 399
Query: 59 LDLSSNYY 66
+ L +N +
Sbjct: 400 IWLHTNPW 407
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 70
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 LDLSGN--QNLTTLGLANLPNLKTLDLRDCGITTIQ 116
LDLS N ++L + + P L+ LDL C I TI+
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 69
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 50 LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLD- 106
+L+NL LDLS S +L++LQVL++S N +L T L +L+ LD
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230
Query: 107 -LRDCGITTIQGIQQFTS 123
L + Q +Q F S
Sbjct: 231 SLNHIMTSKKQELQHFPS 248
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 28 LANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL 85
A+ +L++L+L+ ++ ++ L NL L L SN L L+NL LD+
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111
Query: 86 SGNQNLTTLG--LANLPNLKTLDLRD 109
S N+ + L +L NLK+L++ D
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGD 137
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 23/114 (20%)
Query: 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS--N 64
LQ LDL+A + S G+ L LKKL + ++ +L + A + S +
Sbjct: 277 LQELDLTATHLKGLPS----GMKGLNLLKKL------VLSVNHFDQLCQISAANFPSLTH 326
Query: 65 YYLHGSLEGL-------ANLTNLQVLDLSGN----QNLTTLGLANLPNLKTLDL 107
Y+ G+++ L L NLQ LDLS N + +L L NL +L+TL+L
Sbjct: 327 LYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLT--NLKKLDLDGCGITTIQGLAKLKNLEA 58
NL +LQVL+L+ + TS GL L NLK IT L + +LE
Sbjct: 418 FQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEV 477
Query: 59 LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
L LSS L + +L + +DLS N +LT + +L +LK
Sbjct: 478 LILSSCGLLSIDQQAFHSLGKMSHVDLSHN-SLTCDSIDSLSHLK 521
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 31 LTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
T L++LDL + + G+ L L+ L LS N++ AN +L L + GN
Sbjct: 274 FTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 90 NLTTLG---LANLPNLKTLDL 107
LG L L NL+TLDL
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDL 354
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 52 KLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
+L NL +L LS N+ S E + NL+ LDLS N +L TL +L+ L++
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV 116
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG 43
+L L +Y++TS L RLG+ +L N K DL G
Sbjct: 273 HLPRFKLEESYDLTS-HLARLGVQDLFNRGKADLSGMS 309
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
L T L +L+LD +T +Q L L LDLS N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 88 NQNLTTLGLANL 99
N+ LT+L L L
Sbjct: 110 NR-LTSLPLGAL 120
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQN 90
L L LD IT + G+ KL L L +SN N+ LDLS N N
Sbjct: 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN--------------NITTLDLSQNTN 86
Query: 91 LTTLG 95
LT L
Sbjct: 87 LTYLA 91
>pdb|3U2H|A Chain A, Crystal Structure Of The C-Terminal Duf1608 Domain Of The
Methanosarcina Acetivorans S-Layer (Ma0829) Protein
Length = 286
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 9 VLDLSANYNITSGSLTRLGLANLTNLKKLDLDG 41
VLD Y I +G + LG K++D+DG
Sbjct: 103 VLDSDDKYTIRTGEMLDLGEGYAIEAKQVDVDG 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,134,876
Number of Sequences: 62578
Number of extensions: 108639
Number of successful extensions: 717
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 295
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)