Query 048165
Match_columns 124
No_of_seqs 122 out of 1470
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 06:55:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.5 1.2E-14 2.5E-19 85.8 3.9 110 3-118 17-131 (175)
2 PLN00113 leucine-rich repeat r 99.5 2.2E-13 4.9E-18 98.5 8.1 109 2-112 90-200 (968)
3 PLN00113 leucine-rich repeat r 99.4 5.3E-13 1.1E-17 96.6 7.6 81 5-88 140-222 (968)
4 KOG0617 Ras suppressor protein 99.4 3E-15 6.5E-20 87.4 -3.6 110 2-117 76-190 (264)
5 KOG4194 Membrane glycoprotein 99.4 5.5E-15 1.2E-19 99.6 -3.5 111 3-116 315-432 (873)
6 KOG0617 Ras suppressor protein 99.3 3.3E-14 7.2E-19 83.1 -3.9 81 4-89 32-113 (264)
7 KOG4194 Membrane glycoprotein 99.3 3.2E-13 6.9E-18 91.3 -0.1 84 30-113 267-354 (873)
8 PLN03150 hypothetical protein; 99.2 2.1E-10 4.5E-15 80.0 8.3 102 7-112 420-527 (623)
9 KOG0472 Leucine-rich repeat pr 99.2 7.4E-12 1.6E-16 81.6 1.0 108 2-114 432-542 (565)
10 KOG1259 Nischarin, modulator o 99.2 5.5E-12 1.2E-16 79.7 0.1 106 6-116 285-390 (490)
11 PF13855 LRR_8: Leucine rich r 99.1 7.7E-11 1.7E-15 58.2 3.6 56 33-88 2-59 (61)
12 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.4E-15 57.6 4.0 59 5-66 1-61 (61)
13 KOG0444 Cytoskeletal regulator 99.1 1.5E-12 3.2E-17 89.3 -4.0 110 4-117 244-356 (1255)
14 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 69.2 4.2 93 28-123 15-111 (175)
15 KOG4237 Extracellular matrix p 99.1 1.8E-11 3.9E-16 79.5 0.9 103 22-124 264-370 (498)
16 KOG0618 Serine/threonine phosp 99.1 2E-11 4.3E-16 86.1 1.0 106 2-112 380-488 (1081)
17 KOG0444 Cytoskeletal regulator 99.0 5.9E-12 1.3E-16 86.4 -3.9 107 4-116 221-332 (1255)
18 KOG0472 Leucine-rich repeat pr 99.0 1E-11 2.2E-16 80.9 -3.6 107 4-116 182-291 (565)
19 PLN03150 hypothetical protein; 98.9 3.6E-09 7.7E-14 74.0 7.1 80 34-114 420-504 (623)
20 KOG4237 Extracellular matrix p 98.9 1.9E-11 4.2E-16 79.3 -4.1 114 7-123 69-211 (498)
21 KOG1259 Nischarin, modulator o 98.8 3.9E-10 8.5E-15 71.5 -0.3 108 4-118 306-417 (490)
22 cd00116 LRR_RI Leucine-rich re 98.8 5.8E-09 1.3E-13 67.1 5.1 14 32-45 137-150 (319)
23 cd00116 LRR_RI Leucine-rich re 98.8 2.9E-09 6.4E-14 68.5 3.2 107 5-113 137-263 (319)
24 KOG1859 Leucine-rich repeat pr 98.8 1.6E-10 3.4E-15 80.4 -3.7 109 7-120 166-274 (1096)
25 PLN03210 Resistant to P. syrin 98.7 1.3E-07 2.9E-12 70.3 9.8 82 4-89 610-692 (1153)
26 KOG0618 Serine/threonine phosp 98.7 4.5E-10 9.7E-15 79.5 -3.0 108 4-116 358-468 (1081)
27 PLN03210 Resistant to P. syrin 98.7 8.7E-08 1.9E-12 71.3 8.2 109 3-117 632-742 (1153)
28 KOG0532 Leucine-rich repeat (L 98.7 9.4E-10 2E-14 74.6 -3.0 108 3-117 119-251 (722)
29 KOG1644 U2-associated snRNP A' 98.7 6E-08 1.3E-12 58.2 4.8 87 31-117 41-130 (233)
30 PF12799 LRR_4: Leucine Rich r 98.6 1.3E-07 2.7E-12 43.5 4.1 40 79-119 2-43 (44)
31 PF12799 LRR_4: Leucine Rich r 98.6 2.1E-07 4.6E-12 42.7 4.1 35 33-67 2-37 (44)
32 PRK15370 E3 ubiquitin-protein 98.5 5.1E-07 1.1E-11 64.4 7.5 98 6-116 200-299 (754)
33 PRK15387 E3 ubiquitin-protein 98.5 3.3E-07 7.1E-12 65.4 6.0 36 79-115 423-460 (788)
34 KOG0532 Leucine-rich repeat (L 98.5 3E-08 6.5E-13 67.5 0.4 80 4-89 165-245 (722)
35 KOG0531 Protein phosphatase 1, 98.5 4.2E-08 9.2E-13 65.7 1.1 110 3-118 93-204 (414)
36 KOG3207 Beta-tubulin folding c 98.5 3.2E-08 6.9E-13 65.4 0.3 117 3-121 170-322 (505)
37 COG4886 Leucine-rich repeat (L 98.5 1E-07 2.2E-12 63.4 2.4 109 6-119 141-274 (394)
38 PRK15370 E3 ubiquitin-protein 98.4 4.3E-07 9.4E-12 64.8 5.3 99 6-116 263-383 (754)
39 PRK15387 E3 ubiquitin-protein 98.4 1.1E-06 2.3E-11 62.9 7.2 17 101-117 343-359 (788)
40 KOG3665 ZYG-1-like serine/thre 98.4 1.9E-07 4.2E-12 66.0 3.2 108 3-113 146-263 (699)
41 KOG1909 Ran GTPase-activating 98.4 8.2E-08 1.8E-12 61.8 1.1 111 2-113 182-311 (382)
42 KOG3207 Beta-tubulin folding c 98.4 2.4E-08 5.2E-13 65.9 -1.4 112 3-116 144-262 (505)
43 KOG0531 Protein phosphatase 1, 98.4 4E-08 8.7E-13 65.8 -1.4 83 2-89 115-197 (414)
44 KOG4658 Apoptotic ATPase [Sign 98.3 3.2E-07 7E-12 66.4 2.4 106 3-111 543-653 (889)
45 KOG1859 Leucine-rich repeat pr 98.3 8.7E-09 1.9E-13 72.0 -5.5 106 4-116 186-295 (1096)
46 COG4886 Leucine-rich repeat (L 98.3 5E-07 1.1E-11 60.1 2.3 99 6-110 117-219 (394)
47 KOG1644 U2-associated snRNP A' 98.3 2.2E-06 4.7E-11 51.7 4.6 98 7-109 44-149 (233)
48 KOG4658 Apoptotic ATPase [Sign 98.2 1.3E-06 2.7E-11 63.5 3.5 84 2-88 568-652 (889)
49 KOG4579 Leucine-rich repeat (L 98.1 1.3E-07 2.9E-12 53.7 -2.7 86 30-116 51-139 (177)
50 KOG2123 Uncharacterized conser 98.0 9.5E-08 2.1E-12 60.2 -4.5 98 4-106 18-123 (388)
51 KOG3665 ZYG-1-like serine/thre 98.0 4.5E-06 9.8E-11 59.3 2.6 109 5-116 122-236 (699)
52 KOG4579 Leucine-rich repeat (L 98.0 3.2E-07 6.9E-12 52.2 -2.6 106 5-115 53-161 (177)
53 KOG1909 Ran GTPase-activating 97.8 1.5E-05 3.3E-10 51.7 2.2 112 4-115 156-285 (382)
54 KOG2739 Leucine-rich acidic nu 97.8 1.9E-05 4.1E-10 49.3 2.2 86 29-114 40-130 (260)
55 KOG2120 SCF ubiquitin ligase, 97.7 3.8E-06 8.2E-11 53.7 -1.6 42 4-46 233-274 (419)
56 PF13306 LRR_5: Leucine rich r 97.6 0.00038 8.3E-09 39.0 6.0 102 1-109 8-112 (129)
57 KOG2982 Uncharacterized conser 97.5 5E-05 1.1E-09 48.8 1.1 82 30-112 69-158 (418)
58 KOG2982 Uncharacterized conser 97.3 0.00025 5.4E-09 45.7 3.2 60 5-67 71-134 (418)
59 PF13306 LRR_5: Leucine rich r 97.3 0.0015 3.2E-08 36.6 6.0 95 1-102 31-128 (129)
60 KOG2123 Uncharacterized conser 97.0 2.2E-05 4.7E-10 50.0 -3.6 82 31-114 18-102 (388)
61 KOG1947 Leucine rich repeat pr 96.8 0.00093 2E-08 45.5 2.3 108 4-112 187-307 (482)
62 COG5238 RNA1 Ran GTPase-activa 96.7 0.0028 6.1E-08 40.6 3.8 109 2-114 89-228 (388)
63 KOG2120 SCF ubiquitin ligase, 96.7 0.00012 2.6E-09 47.2 -2.3 81 33-113 186-273 (419)
64 COG5238 RNA1 Ran GTPase-activa 96.6 0.0052 1.1E-07 39.5 4.3 111 4-116 29-173 (388)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0018 3.8E-08 40.7 2.2 63 27-89 60-127 (260)
66 PF13504 LRR_7: Leucine rich r 96.5 0.0024 5.3E-08 22.9 1.5 17 100-116 1-17 (17)
67 PF00560 LRR_1: Leucine Rich R 96.5 0.002 4.4E-08 24.7 1.3 18 56-74 2-19 (22)
68 PRK15386 type III secretion pr 96.4 0.012 2.6E-07 39.9 5.5 54 31-88 51-104 (426)
69 PRK15386 type III secretion pr 96.2 0.023 5E-07 38.6 5.8 53 4-64 51-104 (426)
70 KOG3864 Uncharacterized conser 96.2 0.001 2.2E-08 40.5 -0.5 34 56-89 103-136 (221)
71 KOG4341 F-box protein containi 96.1 0.0013 2.9E-08 44.1 -0.2 92 30-121 318-422 (483)
72 KOG1947 Leucine rich repeat pr 95.9 0.0047 1E-07 42.1 1.9 105 3-107 212-328 (482)
73 smart00370 LRR Leucine-rich re 94.9 0.026 5.5E-07 22.4 1.6 19 99-117 1-19 (26)
74 smart00369 LRR_TYP Leucine-ric 94.9 0.026 5.5E-07 22.4 1.6 19 99-117 1-19 (26)
75 PF13516 LRR_6: Leucine Rich r 94.8 0.0084 1.8E-07 23.4 0.0 15 54-68 2-16 (24)
76 KOG4341 F-box protein containi 94.6 0.043 9.2E-07 37.3 2.9 108 2-111 317-437 (483)
77 KOG3864 Uncharacterized conser 94.2 0.0066 1.4E-07 37.1 -1.2 56 34-89 103-162 (221)
78 smart00365 LRR_SD22 Leucine-ri 93.9 0.063 1.4E-06 21.5 1.7 20 100-119 2-21 (26)
79 smart00364 LRR_BAC Leucine-ric 92.7 0.085 1.8E-06 21.1 1.2 21 100-120 2-22 (26)
80 smart00367 LRR_CC Leucine-rich 92.3 0.055 1.2E-06 21.5 0.4 14 78-91 2-15 (26)
81 smart00368 LRR_RI Leucine rich 88.0 0.43 9.4E-06 19.2 1.4 14 33-46 3-16 (28)
82 KOG3763 mRNA export factor TAP 84.9 0.73 1.6E-05 32.7 2.0 58 31-89 217-281 (585)
83 KOG0473 Leucine-rich repeat pr 83.7 0.022 4.8E-07 35.9 -5.1 56 29-85 39-95 (326)
84 TIGR00864 PCC polycystin catio 82.5 0.84 1.8E-05 38.3 1.6 28 61-88 2-29 (2740)
85 KOG0473 Leucine-rich repeat pr 82.0 0.016 3.4E-07 36.5 -6.2 83 2-89 39-122 (326)
86 KOG3763 mRNA export factor TAP 69.8 2.8 6E-05 30.0 1.3 64 3-69 216-285 (585)
87 KOG4308 LRR-containing protein 53.8 0.7 1.5E-05 32.3 -3.7 85 30-114 202-304 (478)
88 PF07723 LRR_2: Leucine Rich R 39.6 11 0.00023 14.8 0.1 18 102-119 2-19 (26)
89 TIGR00864 PCC polycystin catio 36.6 26 0.00056 30.6 1.8 33 11-46 1-33 (2740)
90 TIGR02167 Liste_lipo_26 bacter 36.2 18 0.0004 14.2 0.6 12 2-13 3-14 (26)
91 smart00446 LRRcap occurring C- 21.8 42 0.00092 13.4 0.4 14 95-108 8-21 (26)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.52 E-value=1.2e-14 Score=85.85 Aligned_cols=110 Identities=39% Similarity=0.494 Sum_probs=45.8
Q ss_pred CCCcCcEEeccccccccCCcccccccc-cccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcc-cCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L 80 (124)
++.++++|++++|. +. .+. .+. .+.+++.|++++|.++....+..++.|++|++++|.+.... ..+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~--I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ--IS-TIE--NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred cccccccccccccc--cc-ccc--chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 34568899999998 66 344 344 57899999999999999988889999999999999998543 333 368899
Q ss_pred CEEeccCCc--cC-ChhhhcCCCCCCEEeeeccCCCCcccc
Q 048165 81 QVLDLSGNQ--NL-TTLGLANLPNLKTLDLRDCGITTIQGI 118 (124)
Q Consensus 81 ~~l~l~~~~--~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~ 118 (124)
++|.+++|+ .+ ....+..+++|+.|++.+|+++..+.+
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y 131 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY 131 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH
Confidence 999999998 22 135677899999999999999876543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.47 E-value=2.2e-13 Score=98.52 Aligned_cols=109 Identities=30% Similarity=0.392 Sum_probs=55.3
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
..+++|+.|++++|. +.+.+|...+..+++|+.|++++|.+++......+++|++|++++|.+.+..|..++.+++|+
T Consensus 90 ~~l~~L~~L~Ls~n~--~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQ--LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCc--cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 456777777777776 555555444445666666666666655421122344455555555544444444444444455
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCC
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGI 112 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~ 112 (124)
+|++++|. ...+..+..+++|++|++++|.+
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 55554443 11133344444444444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.43 E-value=5.3e-13 Score=96.63 Aligned_cols=81 Identities=32% Similarity=0.404 Sum_probs=31.9
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++|++|++++|. +.+.++ ..+..+++|+.|++++|.+.. +..+..+++|++|++++|.+.+..|..++.+.+|++
T Consensus 140 ~~L~~L~Ls~n~--~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNM--LSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCc--ccccCC-hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 344444444444 332333 233344444444444444332 123333444444444444433333333333333333
Q ss_pred EeccCC
Q 048165 83 LDLSGN 88 (124)
Q Consensus 83 l~l~~~ 88 (124)
+++.+|
T Consensus 217 L~L~~n 222 (968)
T PLN00113 217 IYLGYN 222 (968)
T ss_pred EECcCC
Confidence 333333
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3e-15 Score=87.36 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=80.2
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---hhhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
+.+++|++|++..|+ .. ..| ..|+.++.++.||+++|++.. +..+..+..|+.++++.|.+. ..|..++.+.
T Consensus 76 ssl~klr~lnvgmnr--l~-~lp-rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt 150 (264)
T KOG0617|consen 76 SSLPKLRILNVGMNR--LN-ILP-RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT 150 (264)
T ss_pred hhchhhhheecchhh--hh-cCc-cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc
Confidence 456667777777766 44 345 566777777777777777666 335556667777777777776 6677788888
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+|+.+.+..|. ++ |..++.+.+|+.+++.+|.++-+|+
T Consensus 151 ~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 151 NLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecCh
Confidence 88888888887 55 7788888888889998888877663
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.41 E-value=5.5e-15 Score=99.61 Aligned_cols=111 Identities=32% Similarity=0.401 Sum_probs=89.0
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccch---hcccCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSL---EGLANL 77 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~ 77 (124)
-+++|.+|++++|. ++ .++++.+..+.+|++|+++.|.+... ..+..+.+|++||++.|.+.+..- ..+..+
T Consensus 315 ftqkL~~LdLs~N~--i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 315 FTQKLKELDLSSNR--IT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hcccceeEeccccc--cc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 36889999999998 77 55657888899999999999988885 367778889999999988764332 345578
Q ss_pred CCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 78 TNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 78 ~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
++|+.|.+.+|. ++....+.++++|++|++.+|++.++.
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence 889999998887 776677888899999999998887654
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=3.3e-14 Score=83.07 Aligned_cols=81 Identities=27% Similarity=0.349 Sum_probs=55.5
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+.+++.|-++.|. ++ .++ ..+..+.+++.|++.+|+++. +..+..+++|+.++++.|++. ..|.+|+.++.|+.
T Consensus 32 ~s~ITrLtLSHNK--l~-~vp-pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNK--LT-VVP-PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCc--ee-ecC-CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3455566667776 54 444 456677777777777777777 346777777777777777776 66777777777777
Q ss_pred EeccCCc
Q 048165 83 LDLSGNQ 89 (124)
Q Consensus 83 l~l~~~~ 89 (124)
+++..|.
T Consensus 107 ldltynn 113 (264)
T KOG0617|consen 107 LDLTYNN 113 (264)
T ss_pred hhccccc
Confidence 7776554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.30 E-value=3.2e-13 Score=91.33 Aligned_cols=84 Identities=29% Similarity=0.362 Sum_probs=36.3
Q ss_pred cccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEE
Q 048165 30 NLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTL 105 (124)
Q Consensus 30 ~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l 105 (124)
++.+++.|++..|++..+ .++.++..|+.|++++|.+....++.+..+++|+.|+++.|. ++.+..+..+..|+.|
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 334444444444444332 133344444444444444444444444444444444444444 3333334444444444
Q ss_pred eeeccCCC
Q 048165 106 DLRDCGIT 113 (124)
Q Consensus 106 ~l~~n~~~ 113 (124)
.+++|.+.
T Consensus 347 nLs~Nsi~ 354 (873)
T KOG4194|consen 347 NLSHNSID 354 (873)
T ss_pred cccccchH
Confidence 44444433
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=2.1e-10 Score=80.00 Aligned_cols=102 Identities=27% Similarity=0.413 Sum_probs=81.8
Q ss_pred CcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD 84 (124)
Q Consensus 7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 84 (124)
++.|+++.|. +.+.++ ..+..+++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..++.+++|+.|+
T Consensus 420 v~~L~L~~n~--L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQG--LRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCC--ccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 6678888888 776777 567889999999999999876 34788899999999999999988888899999999999
Q ss_pred ccCCc---cCChhhhcC-CCCCCEEeeeccCC
Q 048165 85 LSGNQ---NLTTLGLAN-LPNLKTLDLRDCGI 112 (124)
Q Consensus 85 l~~~~---~~~~~~~~~-~~~L~~l~l~~n~~ 112 (124)
+++|. .+ |..+.. ..++..+++.+|+.
T Consensus 497 Ls~N~l~g~i-P~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRV-PAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccC-ChHHhhccccCceEEecCCcc
Confidence 99887 44 555544 24567788887764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=7.4e-12 Score=81.58 Aligned_cols=108 Identities=31% Similarity=0.392 Sum_probs=81.6
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhh-hccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-LAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
+.+++++.|+++.|. .. .+| ..++.+..|+.++++.|.+...|. +..+..++++-.++|++....++++..+..|
T Consensus 432 ~~l~kLt~L~L~NN~--Ln-~LP-~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNL--LN-DLP-EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred Hhhhcceeeecccch--hh-hcc-hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 346677777777776 55 556 456667777777777776666443 2233456666666677777777778889999
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
.++++++|. .+ |+.++.|.+++++++.+|+|+-
T Consensus 508 ~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 508 TTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ceeccCCCchhhC-ChhhccccceeEEEecCCccCC
Confidence 999999998 66 8899999999999999999983
No 10
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=5.5e-12 Score=79.72 Aligned_cols=106 Identities=33% Similarity=0.384 Sum_probs=58.3
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEec
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL 85 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 85 (124)
.|+++++++|. +. .+. ....-.+.++.|+++.|.+..+..+..+++|+.||+++|.+.. ....-..+.++++|.+
T Consensus 285 ~LtelDLS~N~--I~-~iD-ESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNL--IT-QID-ESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccc--hh-hhh-hhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 45667777776 54 333 4555667777777777777776667777777777777776552 1111123344455555
Q ss_pred cCCccCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 86 SGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
++|..-+...+.++-+|..||+.+|.|....
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHH
Confidence 5554111233344444445555555444433
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=7.7e-11 Score=58.22 Aligned_cols=56 Identities=45% Similarity=0.604 Sum_probs=30.4
Q ss_pred CccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCC
Q 048165 33 NLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88 (124)
Q Consensus 33 ~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 88 (124)
+|++|++++|+++.. ..+..+++|+++++++|.+....+..+..+++|+++++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 455556666655553 24445555555555555555444445555555555555554
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.12 E-value=1.1e-10 Score=57.64 Aligned_cols=59 Identities=39% Similarity=0.529 Sum_probs=52.1
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccc
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYY 66 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~ 66 (124)
|+|+.|++++|. +. .++...+.++++|+++++++|.++.+ ..+..+++|+++++++|.+
T Consensus 1 p~L~~L~l~~n~--l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK--LT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST--ES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC--CC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999998 77 66767899999999999999999984 3688999999999999864
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.11 E-value=1.5e-12 Score=89.25 Aligned_cols=110 Identities=28% Similarity=0.414 Sum_probs=68.2
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCcccc-ccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYL-HGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~ 81 (124)
+++|+.|++++|. ++ .+. .....+.++++|++++|+++.. ..+..+++|+.|.+.+|+++ +-+|.+++.+..|+
T Consensus 244 l~~LrrLNLS~N~--it-eL~-~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNK--IT-ELN-MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhheeccCcCc--ee-eee-ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 4455555555555 44 222 1233455555666666665553 35556666666666666655 23456666666677
Q ss_pred EEeccCCc-cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 82 VLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 82 ~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
.+..++|. .+.|..+.+|+.|+.|.+++|.+..+|.
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhcccccceeechh
Confidence 77776666 4447788888888888888888887774
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=1.1e-10 Score=69.18 Aligned_cols=93 Identities=41% Similarity=0.619 Sum_probs=35.4
Q ss_pred cccccCccEEeccCCCCcchhhhc-cCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhh-cCCCCCC
Q 048165 28 LANLTNLKKLDLDGCGITTIQGLA-KLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGL-ANLPNLK 103 (124)
Q Consensus 28 ~~~~~~l~~L~l~~~~l~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~-~~~~~L~ 103 (124)
+.....++.|++++|.++.+..++ .+.+|+.|++++|.+... +.+..++.|+.|++++|. .+ ...+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 445667899999999999987776 578999999999999843 567789999999999998 45 2334 4689999
Q ss_pred EEeeeccCCCCccccccccc
Q 048165 104 TLDLRDCGITTIQGIQQFTS 123 (124)
Q Consensus 104 ~l~l~~n~~~~~~~~~~l~~ 123 (124)
.|++++|.|.++..+..+..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~ 111 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSS 111 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG
T ss_pred EEECcCCcCCChHHhHHHHc
Confidence 99999999998877766543
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=1.8e-11 Score=79.48 Aligned_cols=103 Identities=24% Similarity=0.244 Sum_probs=84.3
Q ss_pred cccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhc
Q 048165 22 SLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLA 97 (124)
Q Consensus 22 ~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~ 97 (124)
..|+..|..+++|+.+++++|+++.+ .++.+...++.|.+..|++.......|..+..|++|++.+|. .+.+..+.
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 45656788889999999999998885 467788888999999998876666677788889999998887 45577778
Q ss_pred CCCCCCEEeeeccCCCCcccccccccC
Q 048165 98 NLPNLKTLDLRDCGITTIQGIQQFTSY 124 (124)
Q Consensus 98 ~~~~L~~l~l~~n~~~~~~~~~~l~~~ 124 (124)
.+..|..+.+-+|++.+.+.+.|+.+|
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred ccceeeeeehccCcccCccchHHHHHH
Confidence 888899999999999999988888776
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.10 E-value=2e-11 Score=86.06 Aligned_cols=106 Identities=39% Similarity=0.447 Sum_probs=84.7
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
.++.+|++|++++|+ +. .+|+..+..+..|+.|++++|+++.. ..+..++.|++|...+|.+. ..| .+..++.|
T Consensus 380 ~~~~hLKVLhLsyNr--L~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNR--LN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred ccccceeeeeecccc--cc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 468899999999998 76 67777888899999999999999985 46778888999999888887 667 67788899
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCC
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGI 112 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~ 112 (124)
+.++++.|. .+.......-++|++||+++|.-
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999999886 22122222337899999999873
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.03 E-value=5.9e-12 Score=86.41 Aligned_cols=107 Identities=28% Similarity=0.372 Sum_probs=68.7
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+.+|..++++.|. ++ .+| +.+-.+++|+.|++++|+++.. .....+.+|++|+++.|+++ ..|..+..+++|+.
T Consensus 221 l~NL~dvDlS~N~--Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 221 LHNLRDVDLSENN--LP-IVP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhccccccC--CC-cch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 4455556666665 44 445 4455666666666666666664 34555666777777777766 66777777777777
Q ss_pred EeccCCc----cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 83 LDLSGNQ----NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 83 l~l~~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|.+.+|+ .+ |..++++.+|+.+..++|.+.-+|
T Consensus 296 Ly~n~NkL~FeGi-PSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 296 LYANNNKLTFEGI-PSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred HHhccCcccccCC-ccchhhhhhhHHHHhhccccccCc
Confidence 7776666 44 666677777777777777766554
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.99 E-value=1e-11 Score=80.92 Aligned_cols=107 Identities=25% Similarity=0.296 Sum_probs=84.8
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhccc-CCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA-NLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~ 82 (124)
+..|++++.-.|. .. .+| ..++++.+++.||+.+|++...|.|.++..|.++.++.|.+. ..|.... +++++..
T Consensus 182 m~~L~~ld~~~N~--L~-tlP-~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 MKRLKHLDCNSNL--LE-TLP-PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHhcccchhh--hh-cCC-hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 3456666666665 54 566 577888888889999999888888888888888888888887 5565544 7888999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
++++.|+ ++ |+.+..+.+|+.+|+++|.++..|
T Consensus 257 LDLRdNklke~-Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 257 LDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred eeccccccccC-chHHHHhhhhhhhcccCCccccCC
Confidence 9999988 56 778888888999999999998877
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=3.6e-09 Score=73.95 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=72.2
Q ss_pred ccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc---cCChhhhcCCCCCCEEeee
Q 048165 34 LKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLR 108 (124)
Q Consensus 34 l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~ 108 (124)
++.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|. .+ |..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECc
Confidence 7789999999987 4578899999999999999998999899999999999999997 44 7789999999999999
Q ss_pred ccCCCC
Q 048165 109 DCGITT 114 (124)
Q Consensus 109 ~n~~~~ 114 (124)
+|.++.
T Consensus 499 ~N~l~g 504 (623)
T PLN03150 499 GNSLSG 504 (623)
T ss_pred CCcccc
Confidence 999873
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.93 E-value=1.9e-11 Score=79.31 Aligned_cols=114 Identities=24% Similarity=0.256 Sum_probs=73.1
Q ss_pred CcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEcc-CccccccchhcccCCCCCCEE
Q 048165 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLS-SNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~-~~~~~~~~~~~~~~~~~L~~l 83 (124)
.+++.+..|. +. .+|+..|+.+++|+.+|++.|.|+.+ .++.+++.+.++.+- +|+|++.....|..+.+++.|
T Consensus 69 tveirLdqN~--I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQ--IS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCC--cc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4567788887 66 67778888888888888888888873 477777776666444 477775444455555444444
Q ss_pred ------------------------eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165 84 ------------------------DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123 (124)
Q Consensus 84 ------------------------~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~ 123 (124)
.+-+|. .+....+..+.+++++++..|++.+++.+.|++.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 444443 2322234455566677777777777777666543
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=3.9e-10 Score=71.54 Aligned_cols=108 Identities=34% Similarity=0.356 Sum_probs=87.5
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-hhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.|.++.|++++|. +. .+. .+..+.+|+.||+++|.++... .-..+.+.++|.+++|.+.+ ..++..+-+|..
T Consensus 306 ~Pkir~L~lS~N~--i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvn 378 (490)
T KOG1259|consen 306 APKLRRLILSQNR--IR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVN 378 (490)
T ss_pred ccceeEEeccccc--ee-eeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhhee
Confidence 6889999999998 65 334 5788999999999999998854 33467889999999998862 366778889999
Q ss_pred EeccCCc--c-CChhhhcCCCCCCEEeeeccCCCCcccc
Q 048165 83 LDLSGNQ--N-LTTLGLANLPNLKTLDLRDCGITTIQGI 118 (124)
Q Consensus 83 l~l~~~~--~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 118 (124)
|++.+|. . -....++.+|.|+++.+.+|++...+.+
T Consensus 379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred ccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 9999997 1 1134678899999999999999887654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.85 E-value=5.8e-09 Score=67.13 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=6.6
Q ss_pred cCccEEeccCCCCc
Q 048165 32 TNLKKLDLDGCGIT 45 (124)
Q Consensus 32 ~~l~~L~l~~~~l~ 45 (124)
++++.+++++|.++
T Consensus 137 ~~L~~L~L~~n~l~ 150 (319)
T cd00116 137 PALEKLVLGRNRLE 150 (319)
T ss_pred CCceEEEcCCCcCC
Confidence 44444444444444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=2.9e-09 Score=68.51 Aligned_cols=107 Identities=36% Similarity=0.360 Sum_probs=57.1
Q ss_pred CcCcEEeccccccccCCccc---ccccccccCccEEeccCCCCcc------hhhhccCCCCCEEEccCccccccch----
Q 048165 5 RYLQVLDLSANYNITSGSLT---RLGLANLTNLKKLDLDGCGITT------IQGLAKLKNLEALDLSSNYYLHGSL---- 71 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~---~~~~~~~~~l~~L~l~~~~l~~------~~~~~~~~~L~~l~l~~~~~~~~~~---- 71 (124)
++|+++++++|. +.+... ...+..+++++.|++++|.++. ...+...++|+.+++++|.+.+...
T Consensus 137 ~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRNR--LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred CCceEEEcCCCc--CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 667777777776 431111 1234455667777777776663 1233445567777777776653322
Q ss_pred hcccCCCCCCEEeccCCccC--Chhhhc-----CCCCCCEEeeeccCCC
Q 048165 72 EGLANLTNLQVLDLSGNQNL--TTLGLA-----NLPNLKTLDLRDCGIT 113 (124)
Q Consensus 72 ~~~~~~~~L~~l~l~~~~~~--~~~~~~-----~~~~L~~l~l~~n~~~ 113 (124)
..+..+++|+++++++|... ....+. ..+.|+.+++++|.+.
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 22335566777777666411 011111 1246666666666654
No 24
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.79 E-value=1.6e-10 Score=80.39 Aligned_cols=109 Identities=28% Similarity=0.260 Sum_probs=81.5
Q ss_pred CcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEecc
Q 048165 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86 (124)
Q Consensus 7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 86 (124)
|...++++|. +. .+. ..+.-++.++.|++++|+++.+..+..+++|++||+++|.+. ..|..-..-.+|+.|.++
T Consensus 166 L~~a~fsyN~--L~-~mD-~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNR--LV-LMD-ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred Hhhhhcchhh--HH-hHH-HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4445677776 43 233 456678889999999999999888999999999999999887 555433323349999999
Q ss_pred CCccCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165 87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120 (124)
Q Consensus 87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 120 (124)
+|...+...+..+.+|+.||++.|-+.+...+.-
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~p 274 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEP 274 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhH
Confidence 9973335677888899999999998887765543
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.74 E-value=1.3e-07 Score=70.29 Aligned_cols=82 Identities=29% Similarity=0.351 Sum_probs=47.8
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCC-CcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+.+|+.|++.++. +. .++ .....+++|+.++++++. +...+.+..+++|++|++.+|......|..+..+.+|+.
T Consensus 610 ~~~L~~L~L~~s~--l~-~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSK--LE-KLW-DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCcc--cc-ccc-cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 3456667776665 44 333 234556667777776553 444455556666666666666544455555566666666
Q ss_pred EeccCCc
Q 048165 83 LDLSGNQ 89 (124)
Q Consensus 83 l~l~~~~ 89 (124)
|++.+|.
T Consensus 686 L~L~~c~ 692 (1153)
T PLN03210 686 LDMSRCE 692 (1153)
T ss_pred EeCCCCC
Confidence 6666554
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.73 E-value=4.5e-10 Score=79.50 Aligned_cols=108 Identities=34% Similarity=0.345 Sum_probs=83.3
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
++.|+.|.+.+|. +++... ..+.++++|+.|++++|.+..+ ..+.++..|+.|++++|.++ .+|..+..+..|+
T Consensus 358 ~~~Lq~LylanN~--Ltd~c~-p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 358 HAALQELYLANNH--LTDSCF-PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH 433 (1081)
T ss_pred hHHHHHHHHhcCc--ccccch-hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence 3456667777887 665544 4677888899999999988874 35667888889999999888 6778888888888
Q ss_pred EEeccCCc-cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 82 VLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 82 ~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+|...+|. .. .+.+..++.|+.+|++.|.++.+.
T Consensus 434 tL~ahsN~l~~-fPe~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 434 TLRAHSNQLLS-FPELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred HHhhcCCceee-chhhhhcCcceEEecccchhhhhh
Confidence 88887777 33 337888899999999999887653
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.72 E-value=8.7e-08 Score=71.26 Aligned_cols=109 Identities=29% Similarity=0.354 Sum_probs=65.6
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc-hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
.+++|+.++++++. .-..+| .+..+++|+.|++++|. +.. +..+..+++|+.|++++|......|... .+.+|
T Consensus 632 ~l~~Lk~L~Ls~~~--~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 632 SLTGLRNIDLRGSK--NLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cCCCCCEEECCCCC--CcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 46677777777764 222444 35567777777777764 333 3466677777777777765443555433 56677
Q ss_pred CEEeccCCccCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 81 QVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+.|++.+|..+ ........+|+.|++++|.+..+|.
T Consensus 707 ~~L~Lsgc~~L-~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 707 YRLNLSGCSRL-KSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CEEeCCCCCCc-cccccccCCcCeeecCCCccccccc
Confidence 77777777522 0001123467777777777766553
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=9.4e-10 Score=74.58 Aligned_cols=108 Identities=31% Similarity=0.363 Sum_probs=66.7
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hhhhccCCCCCEEEccCccccc-------------
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQGLAKLKNLEALDLSSNYYLH------------- 68 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~~~~~~~~L~~l~l~~~~~~~------------- 68 (124)
++..++.++++.|+ +. ..| ..++.|+ |+.|-+++|+++. +..++..++|..+|.+.|.+..
T Consensus 119 ~L~~lt~l~ls~Nq--lS-~lp-~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQ--LS-HLP-DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhHHHHhhhccch--hh-cCC-hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 34556666777766 44 334 3333333 6666666666665 3355555556666666655441
Q ss_pred ---------cchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 69 ---------GSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 69 ---------~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
..|..+. .-.|..|+++.|+ .+ |..+.++..|++|-|.+|++++-|+
T Consensus 194 l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HHHhhhhhhhCCHHHh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCCCCChH
Confidence 2333343 3357778888887 56 7788888888999999998887653
No 29
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.66 E-value=6e-08 Score=58.24 Aligned_cols=87 Identities=24% Similarity=0.249 Sum_probs=55.2
Q ss_pred ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--c-CChhhhcCCCCCCEEee
Q 048165 31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--N-LTTLGLANLPNLKTLDL 107 (124)
Q Consensus 31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~-~~~~~~~~~~~L~~l~l 107 (124)
..+...+|+++|.+.....+..++.|.+|.+.+|+++...|.--..++++..|.+.+|. . -+...+..||+|+.|.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34566677777777666666677777777777777775555444455667777777765 1 11334556677777777
Q ss_pred eccCCCCccc
Q 048165 108 RDCGITTIQG 117 (124)
Q Consensus 108 ~~n~~~~~~~ 117 (124)
-+|+++....
T Consensus 121 l~Npv~~k~~ 130 (233)
T KOG1644|consen 121 LGNPVEHKKN 130 (233)
T ss_pred cCCchhcccC
Confidence 7777665444
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.60 E-value=1.3e-07 Score=43.46 Aligned_cols=40 Identities=50% Similarity=0.704 Sum_probs=27.5
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 119 (124)
+|++|++++|. .+ +..+..+++|+.|++++|++++++++.
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~~l~ 43 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDISPLS 43 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEGGGT
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCcCCC
Confidence 56777777776 44 334777888888888888887776654
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.55 E-value=2.1e-07 Score=42.70 Aligned_cols=35 Identities=46% Similarity=0.581 Sum_probs=19.3
Q ss_pred CccEEeccCCCCcchhh-hccCCCCCEEEccCcccc
Q 048165 33 NLKKLDLDGCGITTIQG-LAKLKNLEALDLSSNYYL 67 (124)
Q Consensus 33 ~l~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~ 67 (124)
+|++|++++|+++.++. +..+++|+.+++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 45566666666665443 556666666666666554
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.53 E-value=5.1e-07 Score=64.41 Aligned_cols=98 Identities=30% Similarity=0.303 Sum_probs=52.8
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEec
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL 85 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 85 (124)
.++.|++++|. +. .+|.. + ..+|+.|++++|+++..+. ....+|+.|++++|.+. ..|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls~N~--Lt-sLP~~-l--~~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNE--LK-SLPEN-L--QGNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCC--CC-cCChh-h--ccCCCEEECCCCccccCCh-hhhccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 46666777766 54 34422 1 2467777777776665432 11235666666666665 3344332 35666666
Q ss_pred cCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 86 SGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 86 ~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
++|. .+ |..+ +++|+.|++++|.++.++
T Consensus 270 s~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 270 FHNKISCL-PENL--PEELRYLSVYDNSIRTLP 299 (754)
T ss_pred cCCccCcc-cccc--CCCCcEEECCCCccccCc
Confidence 6665 22 2222 235666666666666544
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.51 E-value=3.3e-07 Score=65.42 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
+|+.|++++|. .+ |..+..++.|..+++++|+++..
T Consensus 423 ~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 423 GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCch
Confidence 34555555555 44 55566777888888888888753
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=3e-08 Score=67.54 Aligned_cols=80 Identities=33% Similarity=0.361 Sum_probs=63.7
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+++.+++.+.|. +. .++ ..+.++.+++.|.+.+|++..+ ..+..++ |..||++.|++. .+|-.|..+..|++
T Consensus 165 ~~tl~~ld~s~ne--i~-slp-sql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 165 LPTLAHLDVSKNE--IQ-SLP-SQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred chhHHHhhhhhhh--hh-hch-HHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhee
Confidence 4566677778887 55 445 4567788888888888888884 4666444 899999999999 77888999999999
Q ss_pred EeccCCc
Q 048165 83 LDLSGNQ 89 (124)
Q Consensus 83 l~l~~~~ 89 (124)
|-|-+|.
T Consensus 239 l~LenNP 245 (722)
T KOG0532|consen 239 LQLENNP 245 (722)
T ss_pred eeeccCC
Confidence 9999887
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=4.2e-08 Score=65.67 Aligned_cols=110 Identities=37% Similarity=0.483 Sum_probs=65.8
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+.++..+++..|. +. .+. ..+..+.+|+.|++++|.|+....+..++.|+.|++.+|.+... ..+..+..++.
T Consensus 93 ~~~~l~~l~l~~n~--i~-~i~-~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNK--IE-KIE-NLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred cccceeeeeccccc--hh-hcc-cchhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 45566666777766 54 233 12556777777777777777766666666677777777766522 33444666677
Q ss_pred EeccCCccCChhh--hcCCCCCCEEeeeccCCCCcccc
Q 048165 83 LDLSGNQNLTTLG--LANLPNLKTLDLRDCGITTIQGI 118 (124)
Q Consensus 83 l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~~ 118 (124)
+++++|....... ...+.+++.+.+++|.+..+..+
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhcccch
Confidence 7777665111112 35566666667777666655443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.2e-08 Score=65.38 Aligned_cols=117 Identities=26% Similarity=0.375 Sum_probs=67.0
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hh-------------------------hhccCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQ-------------------------GLAKLKN 55 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~-------------------------~~~~~~~ 55 (124)
.+|+|+.|+++.|. +.-......-..+++++.|.++.|.++. +. ....+..
T Consensus 170 qLp~Le~LNls~Nr--l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 170 QLPSLENLNLSSNR--LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred hcccchhccccccc--ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 46777777777776 3211110111135556666666665554 11 1122445
Q ss_pred CCEEEccCccccccc-hhcccCCCCCCEEeccCCc--cCC-hhh-----hcCCCCCCEEeeeccCCCCccccccc
Q 048165 56 LEALDLSSNYYLHGS-LEGLANLTNLQVLDLSGNQ--NLT-TLG-----LANLPNLKTLDLRDCGITTIQGIQQF 121 (124)
Q Consensus 56 L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~--~~~-~~~-----~~~~~~L~~l~l~~n~~~~~~~~~~l 121 (124)
|++|++++|.+-+.. ....+.++.|+.++++.++ ++. ++. ...+++|+.|++..|++++++++.++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 666666666654221 1335567778888887776 221 111 23567899999999999888876654
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1e-07 Score=63.39 Aligned_cols=109 Identities=41% Similarity=0.481 Sum_probs=57.0
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhc-cCCCCCEEEccCccccccchhc-----------
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA-KLKNLEALDLSSNYYLHGSLEG----------- 73 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~----------- 73 (124)
+++.|++++|. +. .++ .....++.|+.|+++.|++...+... ..+.|+.+++++|.+. ..|..
T Consensus 141 nL~~L~l~~N~--i~-~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSDNK--IE-SLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215 (394)
T ss_pred hcccccccccc--hh-hhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence 56666666665 43 332 23455666666666666666644333 5555666666666555 22222
Q ss_pred ------------ccCCCCCCEEeccCCccCC-hhhhcCCCCCCEEeeeccCCCCccccc
Q 048165 74 ------------LANLTNLQVLDLSGNQNLT-TLGLANLPNLKTLDLRDCGITTIQGIQ 119 (124)
Q Consensus 74 ------------~~~~~~L~~l~l~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~ 119 (124)
+....++..+.+..++... +..+..++.++.+++++|.+++++.+.
T Consensus 216 ~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~ 274 (394)
T COG4886 216 LSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLG 274 (394)
T ss_pred hcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccccc
Confidence 2222333333333333111 344555666777777777777766533
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=4.3e-07 Score=64.77 Aligned_cols=99 Identities=33% Similarity=0.367 Sum_probs=53.7
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhh-hc-------------------cCCCCCEEEccCcc
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-LA-------------------KLKNLEALDLSSNY 65 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~-------------------~~~~L~~l~l~~~~ 65 (124)
+|+.|++++|. +. .+| ..+ .++|+.|++++|+++..+. +. ..++|++|++++|.
T Consensus 263 ~L~~L~Ls~N~--L~-~LP-~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 263 ALQSLDLFHNK--IS-CLP-ENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA 336 (754)
T ss_pred CCCEEECcCCc--cC-ccc-ccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence 56777777776 54 344 222 2467777777776665221 10 12345666666665
Q ss_pred ccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 66 YLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 66 ~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+. ..|..+. ++|+.|++++|. .+ |..+ .++|+.|++++|.++.+|
T Consensus 337 Lt-~LP~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 337 LT-SLPASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLP 383 (754)
T ss_pred cc-cCChhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCC
Confidence 55 2333322 467777777665 23 2222 246677777777666554
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.44 E-value=1.1e-06 Score=62.90 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=9.4
Q ss_pred CCCEEeeeccCCCCccc
Q 048165 101 NLKTLDLRDCGITTIQG 117 (124)
Q Consensus 101 ~L~~l~l~~n~~~~~~~ 117 (124)
+|+.|++++|.++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 343 GLQELSVSDNQLASLPT 359 (788)
T ss_pred ccceEecCCCccCCCCC
Confidence 45555555555555544
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.42 E-value=1.9e-07 Score=65.96 Aligned_cols=108 Identities=31% Similarity=0.430 Sum_probs=77.3
Q ss_pred CCCcCcEEeccccccccCC-cccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccc-cchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSG-SLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLH-GSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L 80 (124)
.||.|+.|.+.+-. +.. .+. ....++++|..||+++++++...+++.+++|+.|.+.+-.+.. .....+..+.+|
T Consensus 146 ~LPsL~sL~i~~~~--~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ--FDNDDFS-QLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCce--ecchhHH-HHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 47888888888866 321 222 3456789999999999999988888889999998888766652 233456788999
Q ss_pred CEEeccCCccCC-h----h---hhcCCCCCCEEeeeccCCC
Q 048165 81 QVLDLSGNQNLT-T----L---GLANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 81 ~~l~l~~~~~~~-~----~---~~~~~~~L~~l~l~~n~~~ 113 (124)
+.||++..+... + . -...+|.|+.||.+++.+.
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999998776110 1 1 1124788999998887664
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=8.2e-08 Score=61.79 Aligned_cols=111 Identities=24% Similarity=0.310 Sum_probs=74.1
Q ss_pred CCCCcCcEEeccccccccCCc-ccccccccccCccEEeccCCCCcc------hhhhccCCCCCEEEccCccccccchhcc
Q 048165 2 ANLRYLQVLDLSANYNITSGS-LTRLGLANLTNLKKLDLDGCGITT------IQGLAKLKNLEALDLSSNYYLHGSLEGL 74 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~l~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 74 (124)
..++.+..+.+.+|.+...+. .-+..+..|++|+.||+++|.++. ...++.+++|+.+++++|.+.......+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 345677788888887333322 122456778888888888887766 1256677788888888888775544433
Q ss_pred c-----CCCCCCEEeccCCc-------cCChhhhcCCCCCCEEeeeccCCC
Q 048165 75 A-----NLTNLQVLDLSGNQ-------NLTTLGLANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 75 ~-----~~~~L~~l~l~~~~-------~~~~~~~~~~~~L~~l~l~~n~~~ 113 (124)
. ..++|+.+.+.+|. .+ ...+...+.|..|++++|.+.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~l-a~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALAL-AACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHH-HHHHhcchhhHHhcCCccccc
Confidence 3 46788888888886 11 223345677888888888873
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.4e-08 Score=65.95 Aligned_cols=112 Identities=22% Similarity=0.237 Sum_probs=57.6
Q ss_pred CCCcCcEEeccccccccCCccc-ccccccccCccEEeccCCCCcchh---hhccCCCCCEEEccCccccccchhcc-cCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLT-RLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSNYYLHGSLEGL-ANL 77 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~ 77 (124)
.|++++.|+++.|- +....+ ......+++|+.|+++.|++..+. .-..+++++.|.+++|.+++...... ..+
T Consensus 144 ~~~~v~~LdLS~NL--~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNL--FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hCCcceeecchhhh--HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 36666667776665 331111 123345677777777777665531 12235566666666666654433322 245
Q ss_pred CCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 78 TNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 78 ~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|+++.|.+..|. .+....-.-++.|+.|++++|++.+++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 566666665553 110111122345666666666665554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=4e-08 Score=65.79 Aligned_cols=83 Identities=47% Similarity=0.592 Sum_probs=66.5
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
..+++|+++++++|. +.. +. .+..++.|+.|++.+|.++....+..+..|+.+++++|.+....+.....+.+++
T Consensus 115 ~~~~~L~~L~ls~N~--I~~-i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNK--ITK-LE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLE 189 (414)
T ss_pred hhhhcchheeccccc--ccc-cc--chhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence 458899999999998 763 33 4567788999999999999988888899999999999998854331035667788
Q ss_pred EEeccCCc
Q 048165 82 VLDLSGNQ 89 (124)
Q Consensus 82 ~l~l~~~~ 89 (124)
.+.+..|.
T Consensus 190 ~l~l~~n~ 197 (414)
T KOG0531|consen 190 ELDLGGNS 197 (414)
T ss_pred HHhccCCc
Confidence 88888776
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=3.2e-07 Score=66.40 Aligned_cols=106 Identities=26% Similarity=0.271 Sum_probs=71.6
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc-hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
.++.++.|-+.+|...+. .+....|..++.|++||+++|. +.. |..++.+.+|++|++++..+. ..|..+..+.+|
T Consensus 543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 355677777777641011 2232346778888888888763 333 457778888888888888877 778888888888
Q ss_pred CEEeccCCc---cCChhhhcCCCCCCEEeeeccC
Q 048165 81 QVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCG 111 (124)
Q Consensus 81 ~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~ 111 (124)
.+|++..+. .+ +.....+.+|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccc-cchhhhcccccEEEeeccc
Confidence 888887766 33 4455567788888776554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=8.7e-09 Score=72.03 Aligned_cols=106 Identities=31% Similarity=0.329 Sum_probs=81.5
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCC-CCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLK-NLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++.+++|+++.|. +. .+. .+..|+.|+.||+++|.+..++.+..-. +|+.|.+++|.++. ..++.++.+|+.
T Consensus 186 l~ale~LnLshNk--~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~LksL~~ 258 (1096)
T KOG1859|consen 186 LPALESLNLSHNK--FT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT--LRGIENLKSLYG 258 (1096)
T ss_pred HHHhhhhccchhh--hh-hhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHh--hhhHHhhhhhhc
Confidence 5678899999998 66 333 5778999999999999999977655432 59999999998873 356668889999
Q ss_pred EeccCCc---cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 83 LDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 83 l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|+++.|- .-....++.+..|..|.+.+|++.+-|
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999886 111334556678889999999987654
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=5e-07 Score=60.08 Aligned_cols=99 Identities=39% Similarity=0.475 Sum_probs=48.5
Q ss_pred cCcEEeccccccccCCccccccccccc-CccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLT-NLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
.++.+.+..+. +. .++ ....... +++.|++++|.+... ..+..++.|+.|++++|++. ..+...+..+.++.+
T Consensus 117 ~l~~L~l~~n~--i~-~i~-~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNN--IT-DIP-PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcc--cc-cCc-cccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 34455555554 43 333 2222332 566666666665554 35555666666666666555 323333344555555
Q ss_pred eccCCc--cCChhhhcCCCCCCEEeeecc
Q 048165 84 DLSGNQ--NLTTLGLANLPNLKTLDLRDC 110 (124)
Q Consensus 84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n 110 (124)
.+++|. .+ +........|+.+.+++|
T Consensus 192 ~ls~N~i~~l-~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKISDL-PPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCccccC-chhhhhhhhhhhhhhcCC
Confidence 555555 23 322233344555555555
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.26 E-value=2.2e-06 Score=51.74 Aligned_cols=98 Identities=35% Similarity=0.421 Sum_probs=72.2
Q ss_pred CcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhcc-CCCCCEEEccCcccccc-chhcccCCCCCCEE
Q 048165 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAK-LKNLEALDLSSNYYLHG-SLEGLANLTNLQVL 83 (124)
Q Consensus 7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~-~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l 83 (124)
...++++.|. +. .. +.+..++.|.+|.+++|.|+.+ +.+.. +++|..|.+.+|.+... ....+..|++|++|
T Consensus 44 ~d~iDLtdNd--l~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 44 FDAIDLTDND--LR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cceecccccc--hh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3456777777 43 22 4678899999999999999995 45544 57899999999988732 23567789999999
Q ss_pred eccCCccCC-----hhhhcCCCCCCEEeeec
Q 048165 84 DLSGNQNLT-----TLGLANLPNLKTLDLRD 109 (124)
Q Consensus 84 ~l~~~~~~~-----~~~~~~~~~L~~l~l~~ 109 (124)
.+-+|..-. .-.+..+|+|+.||+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 998886111 11456789999999765
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=1.3e-06 Score=63.46 Aligned_cols=84 Identities=36% Similarity=0.446 Sum_probs=52.8
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
..++.|++|++++|. ..+.+| ..++.+-+|++|++++..++. |..+..+..|.+|++..+......+.....+++|
T Consensus 568 ~~m~~LrVLDLs~~~--~l~~LP-~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNS--SLSKLP-SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred hhCcceEEEECCCCC--ccCcCC-hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 346677777777765 333556 556667777777777777766 3466667777777776655443433444456677
Q ss_pred CEEeccCC
Q 048165 81 QVLDLSGN 88 (124)
Q Consensus 81 ~~l~l~~~ 88 (124)
+++.+...
T Consensus 645 r~L~l~~s 652 (889)
T KOG4658|consen 645 RVLRLPRS 652 (889)
T ss_pred cEEEeecc
Confidence 77766544
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.3e-07 Score=53.74 Aligned_cols=86 Identities=26% Similarity=0.290 Sum_probs=57.5
Q ss_pred cccCccEEeccCCCCcch-hhhc-cCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc-cCChhhhcCCCCCCEEe
Q 048165 30 NLTNLKKLDLDGCGITTI-QGLA-KLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-NLTTLGLANLPNLKTLD 106 (124)
Q Consensus 30 ~~~~l~~L~l~~~~l~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~l~ 106 (124)
....++..++++|.+..+ +.+. .++..+++++++|.+. ..|..+..++.|+.++++.|. ...+..+..+.++..|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 345566678888877764 3333 3457788888888887 446667788888888888877 22255555566777777
Q ss_pred eeccCCCCcc
Q 048165 107 LRDCGITTIQ 116 (124)
Q Consensus 107 l~~n~~~~~~ 116 (124)
..+|.+..++
T Consensus 130 s~~na~~eid 139 (177)
T KOG4579|consen 130 SPENARAEID 139 (177)
T ss_pred CCCCccccCc
Confidence 7776665544
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=9.5e-08 Score=60.24 Aligned_cols=98 Identities=28% Similarity=0.248 Sum_probs=73.4
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccch-hcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSL-EGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~ 82 (124)
+.+.+.|+..+|. ++ .+. ....++.++.|.|+-|+|+....+..|.+|+++++..|.+.+..- .-+..+++|+.
T Consensus 18 l~~vkKLNcwg~~--L~-DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LD-DIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCC--cc-HHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3456678888888 65 322 456789999999999999998888899999999999998874322 33558899999
Q ss_pred EeccCCc---cC----ChhhhcCCCCCCEEe
Q 048165 83 LDLSGNQ---NL----TTLGLANLPNLKTLD 106 (124)
Q Consensus 83 l~l~~~~---~~----~~~~~~~~~~L~~l~ 106 (124)
|++..|. .- ....+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998776 11 112456778888776
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=4.5e-06 Score=59.27 Aligned_cols=109 Identities=27% Similarity=0.295 Sum_probs=78.6
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--h-hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--I-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.+|++|+++|...... .++...-..+|+|++|.+.+-.+.. . .-...+|+|..||++++.+... .+.+.+.+|+
T Consensus 122 ~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 3688899999764433 3443344568999999999877655 2 3455789999999999988733 6777888899
Q ss_pred EEeccCCcc---CChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 82 VLDLSGNQN---LTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 82 ~l~l~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
.|.+.+=.. -....+..+.+|++||++..+....+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~ 236 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT 236 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch
Confidence 887765441 11346778899999999987655443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=3.2e-07 Score=52.22 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=73.8
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
..|+..++++|. +. .+|...-..++..+++++++|.++.+ ..+..++.|+.++++.|.+. ..|+.+..+.++..|
T Consensus 53 ~el~~i~ls~N~--fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNG--FK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccch--hh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 456667888888 65 44533333466789999999999995 47889999999999999988 667777778888888
Q ss_pred eccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
+..++. .++.+ +-.-......+++.+++.+-
T Consensus 129 ds~~na~~eid~d-l~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 129 DSPENARAEIDVD-LFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred cCCCCccccCcHH-HhccccHHHHHhcCCccccc
Confidence 888886 45222 32222333334455555543
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=1.5e-05 Score=51.69 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=70.6
Q ss_pred CCcCcEEeccccccccCCccc-ccccccccCccEEeccCCCCcc--h----hhhccCCCCCEEEccCccccccch----h
Q 048165 4 LRYLQVLDLSANYNITSGSLT-RLGLANLTNLKKLDLDGCGITT--I----QGLAKLKNLEALDLSSNYYLHGSL----E 72 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~--~----~~~~~~~~L~~l~l~~~~~~~~~~----~ 72 (124)
=++|+++..+.|+..-.+... +..+..++.++.+.++.|.|.. . ..+..+++|+.||++.|-++.... .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 356777887777722111111 1345667788888888777655 1 356678888888888887763322 3
Q ss_pred cccCCCCCCEEeccCCc-------cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 73 GLANLTNLQVLDLSGNQ-------NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 73 ~~~~~~~L~~l~l~~~~-------~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
.+..++.|+.+++++|. .+....-...|.|+.+.+.+|.++..
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 45567778888888775 12111223467888888888877643
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.76 E-value=1.9e-05 Score=49.29 Aligned_cols=86 Identities=37% Similarity=0.496 Sum_probs=49.7
Q ss_pred ccccCccEEeccCCCCcchhhhccCCCCCEEEccCc--cccccchhcccCCCCCCEEeccCCc-cC--ChhhhcCCCCCC
Q 048165 29 ANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSN--YYLHGSLEGLANLTNLQVLDLSGNQ-NL--TTLGLANLPNLK 103 (124)
Q Consensus 29 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~-~~--~~~~~~~~~~L~ 103 (124)
..+..++.+.+.+..++....+..+++|++|.++.| .+....+-..-.+++|+++++++|+ .+ +...+..+.+|.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 345556666666666666666666777777777777 3332222222245777777777776 21 012233445666
Q ss_pred EEeeeccCCCC
Q 048165 104 TLDLRDCGITT 114 (124)
Q Consensus 104 ~l~l~~n~~~~ 114 (124)
.|++..|....
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 77776666554
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=3.8e-06 Score=53.73 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT 46 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 46 (124)
-.+|+.+++++|.- ++..-....+.+|+.|..|++++|.+..
T Consensus 233 N~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSG-FTENALQLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred cccceeeccccccc-cchhHHHHHHHhhhhHhhcCchHhhccc
Confidence 44566667766641 1111111234567777777777776544
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.00038 Score=39.02 Aligned_cols=102 Identities=21% Similarity=0.354 Sum_probs=59.5
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++.+++.+.+... +. .++...+..+.+++.+.+..+ +... ..+..+.+++.+.+.+ .+.......+..+.
T Consensus 8 F~~~~~l~~i~~~~~---~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPNT---IK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECCC---ee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 567888998888753 33 455577888989999999875 5553 3577777899999976 33323345666788
Q ss_pred CCCEEeccCCc-cCChhhhcCCCCCCEEeeec
Q 048165 79 NLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRD 109 (124)
Q Consensus 79 ~L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~ 109 (124)
+++.+.+..+- .+....+..+ .++.+.+..
T Consensus 82 ~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCccccEEchhhhcCC-CceEEEECC
Confidence 99999986553 4545556666 888887764
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=5e-05 Score=48.81 Aligned_cols=82 Identities=34% Similarity=0.498 Sum_probs=50.0
Q ss_pred cccCccEEeccCCCCcchh----hhccCCCCCEEEccCccccccchhcc-cCCCCCCEEeccCCc-cC--ChhhhcCCCC
Q 048165 30 NLTNLKKLDLDGCGITTIQ----GLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQ-NL--TTLGLANLPN 101 (124)
Q Consensus 30 ~~~~l~~L~l~~~~l~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~-~~--~~~~~~~~~~ 101 (124)
.+..++.+|+.+|.++..+ .+.++|.+++|+++.|.+... ...+ ....+|+.+-+.+.. .+ ....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4566777888888877743 344678888888888777632 2222 244567777776665 11 1223455666
Q ss_pred CCEEeeeccCC
Q 048165 102 LKTLDLRDCGI 112 (124)
Q Consensus 102 L~~l~l~~n~~ 112 (124)
++.++++-|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 66666666633
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00025 Score=45.73 Aligned_cols=60 Identities=28% Similarity=0.300 Sum_probs=26.7
Q ss_pred CcCcEEeccccccccCCc--ccccccccccCccEEeccCCCCcch-hhh-ccCCCCCEEEccCcccc
Q 048165 5 RYLQVLDLSANYNITSGS--LTRLGLANLTNLKKLDLDGCGITTI-QGL-AKLKNLEALDLSSNYYL 67 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~--~~~~~~~~~~~l~~L~l~~~~l~~~-~~~-~~~~~L~~l~l~~~~~~ 67 (124)
..++++++.+|. +... +. ..+..++.+++|+++.|.+..+ ... ....+|+.+.+.+..+.
T Consensus 71 ~~v~elDL~~N~--iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 71 TDVKELDLTGNL--ISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhcccch--hccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 344555555555 3311 22 2334555555555555555442 111 13334555555444433
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.32 E-value=0.0015 Score=36.62 Aligned_cols=95 Identities=19% Similarity=0.352 Sum_probs=51.3
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++..++.+.+..+ +. .++...+..++.++.+.+.. .+... ..+..+.+++.+++..+ +.......+..+
T Consensus 31 F~~~~~l~~i~~~~~---~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~- 103 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN---LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC- 103 (129)
T ss_dssp TTT-TT-SEEEESST---TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred ccccccccccccccc---cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence 467778999988775 33 44546788888899999976 44432 35667889999999765 443444566676
Q ss_pred CCCEEeccCCc-cCChhhhcCCCCC
Q 048165 79 NLQVLDLSGNQ-NLTTLGLANLPNL 102 (124)
Q Consensus 79 ~L~~l~l~~~~-~~~~~~~~~~~~L 102 (124)
.++.+.+..+- .+....+..|++|
T Consensus 104 ~l~~i~~~~~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPSNITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TTB-SS----GGG-----
T ss_pred CceEEEECCCccEECCccccccccC
Confidence 89999887643 5656666777655
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=2.2e-05 Score=49.95 Aligned_cols=82 Identities=39% Similarity=0.413 Sum_probs=67.8
Q ss_pred ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCC-hhhhcCCCCCCEEee
Q 048165 31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLT-TLGLANLPNLKTLDL 107 (124)
Q Consensus 31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l 107 (124)
+.+.+.|++-+|.+++++....|+.|+.|.++-|.+.. ...+..|.+|+.+.+..|. .+. ...+..+|+|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 56678889999999999988899999999999999973 3567899999999999886 221 335667899999999
Q ss_pred eccCCCC
Q 048165 108 RDCGITT 114 (124)
Q Consensus 108 ~~n~~~~ 114 (124)
..|+...
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 9998654
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.00093 Score=45.46 Aligned_cols=108 Identities=38% Similarity=0.439 Sum_probs=54.5
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCC-C-Ccc-----hhhhccCCCCCEEEccCcc-ccccchhccc
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-G-ITT-----IQGLAKLKNLEALDLSSNY-YLHGSLEGLA 75 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~-l~~-----~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ 75 (124)
++.++.+.+..+.......+. .....++.|+.|+++++ . +.. ......+..|+.++++++. +++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 455666666665422211111 23445667777777652 1 111 1122234566677776665 5544444444
Q ss_pred -CCCCCCEEeccCCccCChhh----hcCCCCCCEEeeeccCC
Q 048165 76 -NLTNLQVLDLSGNQNLTTLG----LANLPNLKTLDLRDCGI 112 (124)
Q Consensus 76 -~~~~L~~l~l~~~~~~~~~~----~~~~~~L~~l~l~~n~~ 112 (124)
.|++|+.+.+..|..++... ...++.|++++++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 36667777665554222222 23556677777766543
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.73 E-value=0.0028 Score=40.62 Aligned_cols=109 Identities=26% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCCcCcEEeccccccccCCcccc---cccccccCccEEeccCCCCcchh---------------hhccCCCCCEEEccC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTR---LGLANLTNLKKLDLDGCGITTIQ---------------GLAKLKNLEALDLSS 63 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~---~~~~~~~~l~~L~l~~~~l~~~~---------------~~~~~~~L~~l~l~~ 63 (124)
.+||+|+.++++.|. +....++ +.+.....+..|.+++|.+.... ....-|.|+.+.+..
T Consensus 89 lkcp~l~~v~LSDNA--fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 89 LKCPRLQKVDLSDNA--FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred hcCCcceeeeccccc--cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 478999999999998 5433331 23456677888899888765421 122457788888888
Q ss_pred ccccccchhc-----ccCCCCCCEEeccCCccCChh--------hhcCCCCCCEEeeeccCCCC
Q 048165 64 NYYLHGSLEG-----LANLTNLQVLDLSGNQNLTTL--------GLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 64 ~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~--------~~~~~~~L~~l~l~~n~~~~ 114 (124)
|++. ..+.. +.....|..+.+..|. |.|. .+.++.+|+.||+..|-++.
T Consensus 167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 167 NRLE-NGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred chhc-cCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 8775 22321 2223466777776664 1122 34467788888888877653
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00012 Score=47.16 Aligned_cols=81 Identities=28% Similarity=0.280 Sum_probs=63.6
Q ss_pred CccEEeccCCCCcch---hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCC----hhhhcCCCCCCEE
Q 048165 33 NLKKLDLDGCGITTI---QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLT----TLGLANLPNLKTL 105 (124)
Q Consensus 33 ~l~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~L~~l 105 (124)
.++.+|+++..++.. .-+.++.+|+.+.+.++++.+.....+.....|+.++++.+..++ .-.+..|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 488899999888873 356678899999999999987777778888899999999887222 2345678889999
Q ss_pred eeeccCCC
Q 048165 106 DLRDCGIT 113 (124)
Q Consensus 106 ~l~~n~~~ 113 (124)
+++.+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 88887654
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.59 E-value=0.0052 Score=39.46 Aligned_cols=111 Identities=23% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCcCcEEeccccccccCCccc---ccccccccCccEEeccCCCCcc------------hhhhccCCCCCEEEccCccccc
Q 048165 4 LRYLQVLDLSANYNITSGSLT---RLGLANLTNLKKLDLDGCGITT------------IQGLAKLKNLEALDLSSNYYLH 68 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~---~~~~~~~~~l~~L~l~~~~l~~------------~~~~~~~~~L~~l~l~~~~~~~ 68 (124)
+..++.++++||. +.+... ...+..-.+|+..+++.--... .+.+..||+|++.+++.|.+..
T Consensus 29 ~d~~~evdLSGNt--igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNT--IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCc--ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4457788999998 653321 0133455678888887643221 2356679999999999999886
Q ss_pred cchhccc----CCCCCCEEeccCCc--cCChhhh-------------cCCCCCCEEeeeccCCCCcc
Q 048165 69 GSLEGLA----NLTNLQVLDLSGNQ--NLTTLGL-------------ANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 69 ~~~~~~~----~~~~L~~l~l~~~~--~~~~~~~-------------~~~~~L~~l~l~~n~~~~~~ 116 (124)
..|..++ +-..+.+|.+++|+ .+....+ ..-|.|+.+..+.|.+...+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 6665444 56789999999887 2111111 13367888888888876554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0018 Score=40.75 Aligned_cols=63 Identities=33% Similarity=0.395 Sum_probs=36.3
Q ss_pred ccccccCccEEeccCC--CCcc-h-hhhccCCCCCEEEccCcccccc-chhcccCCCCCCEEeccCCc
Q 048165 27 GLANLTNLKKLDLDGC--GITT-I-QGLAKLKNLEALDLSSNYYLHG-SLEGLANLTNLQVLDLSGNQ 89 (124)
Q Consensus 27 ~~~~~~~l~~L~l~~~--~l~~-~-~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~ 89 (124)
.+..+++|+.|.++.| .+.. . .-.-.+|+|+++++++|.+... ....+..+.+|..|++..|.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4556777777787777 3333 1 1222347788888887777631 11223344556666666665
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.48 E-value=0.0024 Score=22.90 Aligned_cols=17 Identities=47% Similarity=0.821 Sum_probs=9.7
Q ss_pred CCCCEEeeeccCCCCcc
Q 048165 100 PNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 100 ~~L~~l~l~~n~~~~~~ 116 (124)
++|+.|++++|.+.++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36788888888877654
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.002 Score=24.72 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=10.1
Q ss_pred CCEEEccCccccccchhcc
Q 048165 56 LEALDLSSNYYLHGSLEGL 74 (124)
Q Consensus 56 L~~l~l~~~~~~~~~~~~~ 74 (124)
|++|++++|.++ ..|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 556666666665 444444
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.42 E-value=0.012 Score=39.87 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=24.1
Q ss_pred ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCC
Q 048165 31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88 (124)
Q Consensus 31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 88 (124)
|.+++.|++++|.++..+. -..+|+.|.+.++.-....|..+. .+|+.|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 4555555555555554431 122455555554332223333221 34555555544
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.18 E-value=0.023 Score=38.59 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=27.5
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCC-CCcchhhhccCCCCCEEEccCc
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTIQGLAKLKNLEALDLSSN 64 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~l~~~~~~~~~~~L~~l~l~~~ 64 (124)
|.+++.|++++|. +. .+| . + -.+|+.|.+++| .++..+.. -.++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~--L~-sLP-~-L--P~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCD--IE-SLP-V-L--PNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCC--Cc-ccC-C-C--CCCCcEEEccCCCCcccCCch-hhhhhhheEccCc
Confidence 5677788888875 54 334 1 1 123666676654 33332211 0235555555555
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.001 Score=40.50 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCEEEccCccccccchhcccCCCCCCEEeccCCc
Q 048165 56 LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89 (124)
Q Consensus 56 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 89 (124)
++.++.+++.+.....+.+..+++++.+.+.+|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 3444444444443333444444444444444444
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.11 E-value=0.0013 Score=44.09 Aligned_cols=92 Identities=27% Similarity=0.376 Sum_probs=37.6
Q ss_pred cccCccEEeccCCC-Ccc--hhh-hccCCCCCEEEccCcccc--ccchhcccCCCCCCEEeccCCccCChhhhc------
Q 048165 30 NLTNLKKLDLDGCG-ITT--IQG-LAKLKNLEALDLSSNYYL--HGSLEGLANLTNLQVLDLSGNQNLTTLGLA------ 97 (124)
Q Consensus 30 ~~~~l~~L~l~~~~-l~~--~~~-~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~------ 97 (124)
++.+|+++.+.+|+ ++. ... -.+++.|+.+++..+... ....+.-..|+.++.+.+++|..++...+.
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34555555555553 222 111 113444555555444322 111122224555555555555433222111
Q ss_pred -CCCCCCEEeeeccCCCCccccccc
Q 048165 98 -NLPNLKTLDLRDCGITTIQGIQQF 121 (124)
Q Consensus 98 -~~~~L~~l~l~~n~~~~~~~~~~l 121 (124)
....++.+.++.++......++++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHH
Confidence 223445555555554444444333
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.95 E-value=0.0047 Score=42.05 Aligned_cols=105 Identities=40% Similarity=0.502 Sum_probs=65.6
Q ss_pred CCCcCcEEeccccccccC--CcccccccccccCccEEeccCCC-Ccc--hhhhc-cCCCCCEEEccCcc-ccccchhccc
Q 048165 3 NLRYLQVLDLSANYNITS--GSLTRLGLANLTNLKKLDLDGCG-ITT--IQGLA-KLKNLEALDLSSNY-YLHGSLEGLA 75 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~-l~~--~~~~~-~~~~L~~l~l~~~~-~~~~~~~~~~ 75 (124)
.++.|+.++++++..... ..........+++++.++++++. +++ ...+. .++.|+.+.+.++. +++.....+.
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 578889999887311111 01111234567889999999987 666 23333 37899999987777 5644444444
Q ss_pred -CCCCCCEEeccCCccCCh----hhhcCCCCCCEEee
Q 048165 76 -NLTNLQVLDLSGNQNLTT----LGLANLPNLKTLDL 107 (124)
Q Consensus 76 -~~~~L~~l~l~~~~~~~~----~~~~~~~~L~~l~l 107 (124)
.++.|+++++..|..+.. .....|++++.+.+
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 678899999998873211 22345666666543
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.88 E-value=0.026 Score=22.36 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=15.4
Q ss_pred CCCCCEEeeeccCCCCccc
Q 048165 99 LPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 99 ~~~L~~l~l~~n~~~~~~~ 117 (124)
+.+|+.|++++|.+..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3578899999999988874
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.88 E-value=0.026 Score=22.36 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=15.4
Q ss_pred CCCCCEEeeeccCCCCccc
Q 048165 99 LPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 99 ~~~L~~l~l~~n~~~~~~~ 117 (124)
+.+|+.|++++|.+..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3578899999999988874
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.76 E-value=0.0084 Score=23.35 Aligned_cols=15 Identities=53% Similarity=0.616 Sum_probs=6.4
Q ss_pred CCCCEEEccCccccc
Q 048165 54 KNLEALDLSSNYYLH 68 (124)
Q Consensus 54 ~~L~~l~l~~~~~~~ 68 (124)
++|++|++++|.+.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.59 E-value=0.043 Score=37.27 Aligned_cols=108 Identities=31% Similarity=0.404 Sum_probs=66.4
Q ss_pred CCCCcCcEEeccccccccCCccccccc-ccccCccEEeccCCCCcc---h-hhhccCCCCCEEEccCcccc-ccchhccc
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGL-ANLTNLKKLDLDGCGITT---I-QGLAKLKNLEALDLSSNYYL-HGSLEGLA 75 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~l~~---~-~~~~~~~~L~~l~l~~~~~~-~~~~~~~~ 75 (124)
.++++|+++.+++|+. ++ ......+ .++++|+.+++.++.... . ..-..++.|+.+.++.+... +.....+.
T Consensus 317 ~~~~~L~~l~l~~c~~-fs-d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQ-FS-DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred cCCCceEEEeccccch-hh-hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 3578899999999873 22 2221222 368889999998885443 1 23346788999888876532 22112222
Q ss_pred ----CCCCCCEEeccCCccCChh---hhcCCCCCCEEeeeccC
Q 048165 76 ----NLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCG 111 (124)
Q Consensus 76 ----~~~~L~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~ 111 (124)
....++.+.+.++..++.. .+..|++|+.+++-.++
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 3456777788888744332 34567788887776553
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.0066 Score=37.07 Aligned_cols=56 Identities=30% Similarity=0.449 Sum_probs=23.4
Q ss_pred ccEEeccCCCCcc--hhhhccCCCCCEEEccCcccc-ccchhccc-CCCCCCEEeccCCc
Q 048165 34 LKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYL-HGSLEGLA-NLTNLQVLDLSGNQ 89 (124)
Q Consensus 34 l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~-~~~~L~~l~l~~~~ 89 (124)
++.++-+++.|.. ...+..++.++.+.+.+|.-- +-..+.++ -.++|+.|++++|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 3444444444433 234444555555555544321 11111111 23455555555555
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=93.91 E-value=0.063 Score=21.52 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.2
Q ss_pred CCCCEEeeeccCCCCccccc
Q 048165 100 PNLKTLDLRDCGITTIQGIQ 119 (124)
Q Consensus 100 ~~L~~l~l~~n~~~~~~~~~ 119 (124)
.+|+.|+++.|.|..+..+.
T Consensus 2 ~~L~~L~L~~NkI~~IEnL~ 21 (26)
T smart00365 2 TNLEELDLSQNKIKKIENLD 21 (26)
T ss_pred CccCEEECCCCccceecCcc
Confidence 57888999999988877665
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.66 E-value=0.085 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=16.8
Q ss_pred CCCCEEeeeccCCCCcccccc
Q 048165 100 PNLKTLDLRDCGITTIQGIQQ 120 (124)
Q Consensus 100 ~~L~~l~l~~n~~~~~~~~~~ 120 (124)
++|+.|++++|.++++|.+..
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~~ 22 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELXX 22 (26)
T ss_pred cccceeecCCCccccCccccc
Confidence 468889999999999887543
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.28 E-value=0.055 Score=21.46 Aligned_cols=14 Identities=57% Similarity=0.805 Sum_probs=6.9
Q ss_pred CCCCEEeccCCccC
Q 048165 78 TNLQVLDLSGNQNL 91 (124)
Q Consensus 78 ~~L~~l~l~~~~~~ 91 (124)
++|++|++++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 44555555555433
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.03 E-value=0.43 Score=19.24 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=7.0
Q ss_pred CccEEeccCCCCcc
Q 048165 33 NLKKLDLDGCGITT 46 (124)
Q Consensus 33 ~l~~L~l~~~~l~~ 46 (124)
+|++|++++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 34555555555443
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.94 E-value=0.73 Score=32.65 Aligned_cols=58 Identities=28% Similarity=0.332 Sum_probs=29.0
Q ss_pred ccCccEEeccCCCCcchh---hh-ccCCCCCEEEccCc--ccccc-chhcccCCCCCCEEeccCCc
Q 048165 31 LTNLKKLDLDGCGITTIQ---GL-AKLKNLEALDLSSN--YYLHG-SLEGLANLTNLQVLDLSGNQ 89 (124)
Q Consensus 31 ~~~l~~L~l~~~~l~~~~---~~-~~~~~L~~l~l~~~--~~~~~-~~~~~~~~~~L~~l~l~~~~ 89 (124)
.+.+..+.+++|++-.+. .+ ...|+|.+|+|++| .+... ....+ ....|+++.+.+|.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNP 281 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCc
Confidence 445566666666655532 22 23566777777776 22211 00111 22346666666665
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.66 E-value=0.022 Score=35.89 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=23.5
Q ss_pred ccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEec
Q 048165 29 ANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL 85 (124)
Q Consensus 29 ~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 85 (124)
......+.+|++.|.+... ..+..+..+..++++.|.+. ..|..+.....++.+++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~ 95 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAAS 95 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHh
Confidence 3444455555555544332 23333344444455444443 33333333333333333
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=82.45 E-value=0.84 Score=38.28 Aligned_cols=28 Identities=43% Similarity=0.364 Sum_probs=13.6
Q ss_pred ccCccccccchhcccCCCCCCEEeccCC
Q 048165 61 LSSNYYLHGSLEGLANLTNLQVLDLSGN 88 (124)
Q Consensus 61 l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 88 (124)
|++|++....+..|..+.+|+.|+|.+|
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCC
Confidence 4555555333334444555555555544
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.00 E-value=0.016 Score=36.54 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
+.+...+.|+++.|+ .. ... ..+.-+..+..++++.|.+... ..+++...+..++...|... ..|..+...+.+
T Consensus 39 ~~~kr~tvld~~s~r--~v-n~~-~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNR--LV-NLG-KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hccceeeeehhhhhH--HH-hhc-cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 345667788888887 43 223 3455677788899999888774 46666666777777777666 778888888899
Q ss_pred CEEeccCCc
Q 048165 81 QVLDLSGNQ 89 (124)
Q Consensus 81 ~~l~l~~~~ 89 (124)
+++++-.+.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 998888775
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.77 E-value=2.8 Score=29.97 Aligned_cols=64 Identities=30% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCcCcEEeccccccccCC--cccccccccccCccEEeccCC--CCcchhhhcc--CCCCCEEEccCcccccc
Q 048165 3 NLRYLQVLDLSANYNITSG--SLTRLGLANLTNLKKLDLDGC--GITTIQGLAK--LKNLEALDLSSNYYLHG 69 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~--~~~~~~~~~~~~l~~L~l~~~--~l~~~~~~~~--~~~L~~l~l~~~~~~~~ 69 (124)
+.+.+..++++.|+ +.. .+. +.-...+.+.+|+|++| .+.....+.. ...|+++-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNr--L~~Ld~~s-slsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR--LYHLDALS-SLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccch--hhchhhhh-HHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 45677788888888 431 122 22345788999999999 4544333332 33589999999988743
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=53.85 E-value=0.7 Score=32.33 Aligned_cols=85 Identities=35% Similarity=0.412 Sum_probs=43.5
Q ss_pred cccCccEEeccCCCCcch------hhhccCCC-CCEEEccCccccccchh----cccCC-CCCCEEeccCCcc------C
Q 048165 30 NLTNLKKLDLDGCGITTI------QGLAKLKN-LEALDLSSNYYLHGSLE----GLANL-TNLQVLDLSGNQN------L 91 (124)
Q Consensus 30 ~~~~l~~L~l~~~~l~~~------~~~~~~~~-L~~l~l~~~~~~~~~~~----~~~~~-~~L~~l~l~~~~~------~ 91 (124)
...++++|.+.+|.++.. ..+...+. +..+++..|.+.+.... .+..+ ..++++++..|.. .
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 355566677777666551 12223333 45566666666533222 12233 4556666666651 0
Q ss_pred ChhhhcCCCCCCEEeeeccCCCC
Q 048165 92 TTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 92 ~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
-...+..++.++.+.+..|++..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 02234455566677777666543
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=39.64 E-value=11 Score=14.85 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=8.8
Q ss_pred CCEEeeeccCCCCccccc
Q 048165 102 LKTLDLRDCGITTIQGIQ 119 (124)
Q Consensus 102 L~~l~l~~n~~~~~~~~~ 119 (124)
|++|++....+.+...++
T Consensus 2 LKtL~L~~v~f~~~~~l~ 19 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLE 19 (26)
T ss_pred CeEEEeeEEEECChhHHH
Confidence 455666555554433333
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.56 E-value=26 Score=30.55 Aligned_cols=33 Identities=36% Similarity=0.418 Sum_probs=22.6
Q ss_pred eccccccccCCcccccccccccCccEEeccCCCCcc
Q 048165 11 DLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT 46 (124)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 46 (124)
+|+.|. +. .++...|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~--Ls-tLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNK--IS-TIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCc--CC-ccChHHhccCCCceEEEeeCCcccc
Confidence 456676 55 4555677778888888888776543
No 90
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=36.17 E-value=18 Score=14.22 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=5.1
Q ss_pred CCCCcCcEEecc
Q 048165 2 ANLRYLQVLDLS 13 (124)
Q Consensus 2 ~~~~~l~~l~l~ 13 (124)
.+|.++..|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 344444444433
No 91
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.84 E-value=42 Score=13.36 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=9.6
Q ss_pred hhcCCCCCCEEeee
Q 048165 95 GLANLPNLKTLDLR 108 (124)
Q Consensus 95 ~~~~~~~L~~l~l~ 108 (124)
.+..+|+|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 44567888888754
Done!