Query 048165
Match_columns 124
No_of_seqs 122 out of 1470
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 11:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.6E-24 109.2 9.3 119 1-122 52-174 (220)
2 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-19 9.6E-24 108.8 9.1 118 2-122 54-175 (220)
3 2wfh_A SLIT homolog 2 protein 99.8 3.9E-18 1.3E-22 101.8 9.6 115 5-123 31-149 (193)
4 3e6j_A Variable lymphocyte rec 99.8 9E-18 3.1E-22 102.6 9.7 111 2-116 61-175 (229)
5 3m19_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 103.4 10.0 112 2-116 56-171 (251)
6 1w8a_A SLIT protein; signaling 99.7 8.8E-18 3E-22 100.2 9.0 116 5-122 29-148 (192)
7 3m19_A Variable lymphocyte rec 99.7 9.4E-17 3.2E-21 99.2 12.7 117 2-121 80-201 (251)
8 4ezg_A Putative uncharacterize 99.7 5.2E-17 1.8E-21 97.1 10.2 115 3-122 64-181 (197)
9 2je0_A Acidic leucine-rich nuc 99.7 4.2E-17 1.4E-21 93.5 8.6 112 3-117 15-130 (149)
10 3v47_A TOLL-like receptor 5B a 99.7 5.1E-17 1.7E-21 107.6 10.0 117 2-121 296-417 (455)
11 1ozn_A Reticulon 4 receptor; N 99.7 4.4E-17 1.5E-21 102.3 9.2 113 3-118 127-243 (285)
12 2o6q_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 99.9 10.5 110 2-114 82-195 (270)
13 3rfs_A Internalin B, repeat mo 99.7 2.7E-16 9.4E-21 98.2 12.2 111 3-116 83-197 (272)
14 2v9t_B SLIT homolog 2 protein 99.7 2.5E-16 8.5E-21 95.7 11.7 110 5-117 32-145 (220)
15 2o6r_A Variable lymphocyte rec 99.7 8.3E-17 2.9E-21 94.7 9.1 115 4-121 27-146 (177)
16 4g8a_A TOLL-like receptor 4; l 99.7 5.2E-17 1.8E-21 110.9 9.2 121 2-124 466-591 (635)
17 2o6s_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 94.1 11.8 109 3-114 50-162 (208)
18 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.7E-21 94.9 10.2 114 4-122 43-159 (197)
19 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.9E-21 92.9 9.7 111 4-117 23-137 (168)
20 2o6q_A Variable lymphocyte rec 99.7 5.1E-16 1.7E-20 96.9 12.7 113 2-117 58-174 (270)
21 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.5E-21 100.2 10.2 107 4-114 76-186 (290)
22 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.7E-21 105.9 9.6 115 3-122 183-301 (440)
23 3e6j_A Variable lymphocyte rec 99.7 6E-16 2E-20 94.6 11.9 110 4-117 39-152 (229)
24 3rfs_A Internalin B, repeat mo 99.7 7.2E-16 2.5E-20 96.3 11.9 113 1-116 105-221 (272)
25 2o6s_A Variable lymphocyte rec 99.7 1.2E-15 4E-20 91.9 12.1 111 4-117 27-141 (208)
26 4g8a_A TOLL-like receptor 4; l 99.7 3.9E-16 1.3E-20 106.5 11.1 110 2-114 73-187 (635)
27 2z66_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 100.5 8.6 113 3-118 148-266 (306)
28 3zyi_A Leucine-rich repeat-con 99.7 2.4E-16 8.1E-21 104.6 9.6 114 3-121 194-311 (452)
29 1ozn_A Reticulon 4 receptor; N 99.7 1E-15 3.5E-20 96.0 11.8 112 2-116 53-169 (285)
30 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-15 4.1E-20 92.7 11.6 110 5-116 32-145 (220)
31 3g39_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 90.8 9.6 111 6-122 10-125 (170)
32 3vq2_A TLR4, TOLL-like recepto 99.7 3.2E-16 1.1E-20 107.0 9.8 117 3-122 446-567 (606)
33 3zyj_A Leucine-rich repeat-con 99.7 1.1E-15 3.9E-20 101.0 11.7 118 1-121 84-206 (440)
34 1a9n_A U2A', U2A'; complex (nu 99.7 2.8E-16 9.5E-21 92.4 7.6 109 3-117 17-130 (176)
35 2xot_A Amphoterin-induced prot 99.7 1.2E-15 4.1E-20 98.7 11.3 111 3-116 62-179 (361)
36 1h6t_A Internalin B; cell adhe 99.7 3E-15 1E-19 94.4 12.3 91 28-120 108-198 (291)
37 3zyi_A Leucine-rich repeat-con 99.7 1.6E-15 5.6E-20 100.6 11.3 117 1-120 95-216 (452)
38 2r9u_A Variable lymphocyte rec 99.7 1.2E-15 4.2E-20 89.7 9.6 110 7-122 14-128 (174)
39 1p9a_G Platelet glycoprotein I 99.7 3.1E-15 1.1E-19 94.3 11.8 115 2-120 97-215 (290)
40 4fcg_A Uncharacterized protein 99.7 9.4E-16 3.2E-20 98.1 9.5 107 3-114 181-291 (328)
41 2z62_A TOLL-like receptor 4, v 99.7 2.3E-15 7.8E-20 94.1 10.9 112 2-116 49-165 (276)
42 2ell_A Acidic leucine-rich nuc 99.6 2.3E-15 7.9E-20 87.8 9.8 111 2-117 46-164 (168)
43 1h6t_A Internalin B; cell adhe 99.6 4.9E-15 1.7E-19 93.4 11.7 113 2-121 65-177 (291)
44 4fcg_A Uncharacterized protein 99.6 9.7E-16 3.3E-20 98.1 8.6 108 4-116 103-222 (328)
45 1h6u_A Internalin H; cell adhe 99.6 7E-15 2.4E-19 93.4 12.3 14 100-113 195-208 (308)
46 1h6u_A Internalin H; cell adhe 99.6 7.6E-15 2.6E-19 93.2 12.3 112 2-120 82-193 (308)
47 2z66_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 94.5 10.2 111 2-115 123-238 (306)
48 3v47_A TOLL-like receptor 5B a 99.6 4.9E-15 1.7E-19 98.1 11.2 110 5-117 275-388 (455)
49 3vq2_A TLR4, TOLL-like recepto 99.6 4E-15 1.4E-19 101.6 11.0 113 1-116 52-169 (606)
50 1m9s_A Internalin B; cell inva 99.6 7.9E-15 2.7E-19 100.5 11.9 91 28-120 105-195 (605)
51 2id5_A Lingo-1, leucine rich r 99.6 5.4E-15 1.8E-19 98.5 10.7 113 1-116 52-168 (477)
52 1xeu_A Internalin C; cellular 99.6 1.1E-14 3.9E-19 90.6 11.3 105 4-116 62-166 (263)
53 4fmz_A Internalin; leucine ric 99.6 9.9E-15 3.4E-19 93.7 11.2 113 3-122 219-333 (347)
54 2z63_A TOLL-like receptor 4, v 99.6 2.5E-15 8.7E-20 101.8 8.8 113 2-117 418-535 (570)
55 1ogq_A PGIP-2, polygalacturona 99.6 1.8E-15 6.2E-20 96.2 7.3 106 4-113 75-187 (313)
56 3o6n_A APL1; leucine-rich repe 99.6 7.4E-15 2.5E-19 95.7 10.2 110 3-115 67-180 (390)
57 2xot_A Amphoterin-induced prot 99.6 8.8E-15 3E-19 94.7 10.4 110 5-117 39-153 (361)
58 4fmz_A Internalin; leucine ric 99.6 1.1E-14 3.6E-19 93.6 10.2 109 1-114 239-347 (347)
59 1ogq_A PGIP-2, polygalacturona 99.6 7.1E-15 2.4E-19 93.5 9.2 82 4-88 100-184 (313)
60 2z7x_B TOLL-like receptor 1, v 99.6 5.3E-15 1.8E-19 99.4 9.0 115 4-121 373-489 (520)
61 1xeu_A Internalin C; cellular 99.6 1.1E-14 3.7E-19 90.7 9.5 112 3-122 39-150 (263)
62 3t6q_A CD180 antigen; protein- 99.6 1.3E-14 4.3E-19 99.1 10.6 110 2-114 54-167 (606)
63 1m9s_A Internalin B; cell inva 99.6 1.9E-14 6.6E-19 98.6 11.4 114 2-122 62-175 (605)
64 4glp_A Monocyte differentiatio 99.6 5.4E-15 1.8E-19 93.9 8.1 113 3-120 167-292 (310)
65 2z63_A TOLL-like receptor 4, v 99.6 1.5E-14 5.2E-19 98.0 10.7 112 1-115 48-164 (570)
66 2id5_A Lingo-1, leucine rich r 99.6 2E-14 6.8E-19 95.8 11.0 113 1-116 76-192 (477)
67 4b8c_D Glucose-repressible alc 99.6 6.7E-15 2.3E-19 102.7 8.8 109 2-116 221-332 (727)
68 2z62_A TOLL-like receptor 4, v 99.6 3.2E-14 1.1E-18 88.8 11.0 108 5-115 28-139 (276)
69 3rgz_A Protein brassinosteroid 99.6 1.8E-14 6.1E-19 101.0 10.6 107 4-113 417-527 (768)
70 3oja_B Anopheles plasmodium-re 99.6 1.2E-14 4E-19 99.5 9.3 110 3-115 73-186 (597)
71 3t6q_A CD180 antigen; protein- 99.6 2.4E-14 8.2E-19 97.8 10.7 108 5-115 33-144 (606)
72 3rgz_A Protein brassinosteroid 99.6 1.6E-14 5.4E-19 101.3 9.8 108 2-113 439-551 (768)
73 2wfh_A SLIT homolog 2 protein 99.6 9.5E-14 3.3E-18 82.8 11.8 104 8-117 13-119 (193)
74 1ziw_A TOLL-like receptor 3; i 99.6 2.6E-14 8.9E-19 98.8 10.5 95 30-124 534-634 (680)
75 1ziw_A TOLL-like receptor 3; i 99.6 1.4E-14 4.7E-19 100.1 9.1 108 4-114 48-159 (680)
76 3o6n_A APL1; leucine-rich repe 99.6 2.7E-14 9.4E-19 93.1 10.0 110 4-116 44-157 (390)
77 3o53_A Protein LRIM1, AGAP0063 99.6 3.4E-15 1.1E-19 95.1 5.5 107 4-116 119-230 (317)
78 2je0_A Acidic leucine-rich nuc 99.6 2.4E-14 8.3E-19 81.9 8.6 103 1-108 38-148 (149)
79 3j0a_A TOLL-like receptor 5; m 99.6 3.8E-14 1.3E-18 100.2 11.1 113 1-115 44-163 (844)
80 2z80_A TOLL-like receptor 2, v 99.6 2.1E-14 7.1E-19 92.5 8.6 109 3-114 74-188 (353)
81 1o6v_A Internalin A; bacterial 99.6 1.1E-13 3.7E-18 92.2 12.3 108 3-117 263-370 (466)
82 1xku_A Decorin; proteoglycan, 99.6 4.6E-14 1.6E-18 90.2 10.1 83 33-116 193-279 (330)
83 1dce_A Protein (RAB geranylger 99.6 6E-14 2E-18 95.6 11.1 105 6-117 442-550 (567)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.3E-14 1.5E-18 96.0 10.3 66 54-120 450-517 (562)
85 4eco_A Uncharacterized protein 99.5 5.2E-15 1.8E-19 101.9 5.8 113 2-118 203-349 (636)
86 1w8a_A SLIT protein; signaling 99.5 8.7E-14 3E-18 82.9 10.3 104 7-116 10-118 (192)
87 2ifg_A High affinity nerve gro 99.5 3.7E-14 1.3E-18 91.2 8.9 110 8-123 11-126 (347)
88 1wwl_A Monocyte differentiatio 99.5 2.4E-14 8.1E-19 91.0 7.9 109 3-113 93-214 (312)
89 3oja_B Anopheles plasmodium-re 99.5 8E-14 2.7E-18 95.4 10.9 110 1-114 95-206 (597)
90 1xku_A Decorin; proteoglycan, 99.5 1.3E-13 4.6E-18 88.0 11.3 109 3-116 74-187 (330)
91 2z7x_B TOLL-like receptor 1, v 99.5 1.1E-13 3.6E-18 93.2 11.0 112 2-117 321-461 (520)
92 2z81_A CD282 antigen, TOLL-lik 99.5 3.6E-14 1.2E-18 95.9 8.7 103 6-111 27-134 (549)
93 2xwt_C Thyrotropin receptor; s 99.5 2.8E-14 9.7E-19 87.4 7.4 85 28-114 76-170 (239)
94 4ecn_A Leucine-rich repeat pro 99.5 1E-14 3.5E-19 103.3 6.1 86 30-116 489-589 (876)
95 2z80_A TOLL-like receptor 2, v 99.5 1.5E-14 5.1E-19 93.2 6.1 113 1-116 96-214 (353)
96 3oja_A Leucine-rich immune mol 99.5 1.1E-14 3.8E-19 97.6 5.6 108 3-116 118-230 (487)
97 1o6v_A Internalin A; bacterial 99.5 2.4E-13 8.2E-18 90.5 11.5 91 28-120 261-351 (466)
98 2xwt_C Thyrotropin receptor; s 99.5 1.8E-14 6.1E-19 88.3 5.5 80 36-116 134-221 (239)
99 2z81_A CD282 antigen, TOLL-lik 99.5 1.1E-13 3.6E-18 93.6 9.5 112 1-115 46-163 (549)
100 1wwl_A Monocyte differentiatio 99.5 1.2E-13 4.3E-18 87.7 8.3 109 2-114 118-242 (312)
101 2ft3_A Biglycan; proteoglycan, 99.5 3.3E-13 1.1E-17 86.3 10.2 103 5-113 54-160 (332)
102 3oja_A Leucine-rich immune mol 99.5 3E-13 1E-17 90.7 10.3 105 4-113 143-250 (487)
103 3j0a_A TOLL-like receptor 5; m 99.5 3.6E-13 1.2E-17 95.3 10.8 110 5-117 266-379 (844)
104 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 6E-13 2E-17 90.4 11.4 104 5-114 52-160 (562)
105 1dce_A Protein (RAB geranylger 99.5 2.3E-13 7.7E-18 92.8 9.3 102 2-107 460-567 (567)
106 2o6r_A Variable lymphocyte rec 99.5 1.5E-12 5.1E-17 76.4 11.7 105 7-117 9-117 (177)
107 3o53_A Protein LRIM1, AGAP0063 99.5 5.2E-13 1.8E-17 85.0 10.2 107 3-113 142-250 (317)
108 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-13 7.3E-18 80.1 7.6 103 5-114 42-154 (176)
109 4glp_A Monocyte differentiatio 99.5 1.8E-13 6.1E-18 86.9 7.0 109 4-116 144-267 (310)
110 4eco_A Uncharacterized protein 99.5 4.9E-13 1.7E-17 92.2 9.6 108 4-116 456-582 (636)
111 4ecn_A Leucine-rich repeat pro 99.4 2.4E-13 8.3E-18 96.4 7.9 108 3-116 489-611 (876)
112 3bz5_A Internalin-J, INLJ; leu 99.4 2.4E-12 8.2E-17 85.8 11.4 85 28-116 102-186 (457)
113 2ft3_A Biglycan; proteoglycan, 99.4 1.4E-12 4.7E-17 83.4 9.4 105 5-113 193-307 (332)
114 2ast_B S-phase kinase-associat 99.4 2.2E-13 7.5E-18 87.1 4.4 60 29-88 139-205 (336)
115 3bz5_A Internalin-J, INLJ; leu 99.4 1.7E-12 5.9E-17 86.4 8.6 103 3-115 40-142 (457)
116 4b8c_D Glucose-repressible alc 99.4 2.1E-12 7.1E-17 90.3 7.8 95 26-122 218-316 (727)
117 2r9u_A Variable lymphocyte rec 99.4 6.2E-12 2.1E-16 73.8 8.6 82 5-89 33-116 (174)
118 3g39_A Variable lymphocyte rec 99.4 7.8E-12 2.7E-16 73.1 8.8 83 4-89 29-113 (170)
119 2ast_B S-phase kinase-associat 99.4 1.4E-12 4.6E-17 83.4 6.0 106 3-110 140-257 (336)
120 1ds9_A Outer arm dynein; leuci 99.3 8.4E-15 2.9E-19 87.6 -4.7 106 3-115 46-155 (198)
121 1ds9_A Outer arm dynein; leuci 99.3 1.4E-14 4.9E-19 86.6 -4.6 82 4-89 69-151 (198)
122 1jl5_A Outer protein YOPM; leu 99.2 1.2E-10 4.2E-15 77.5 10.6 55 6-67 132-186 (454)
123 2ca6_A RAN GTPase-activating p 99.2 6.5E-12 2.2E-16 81.8 4.3 17 29-45 119-135 (386)
124 3goz_A Leucine-rich repeat-con 99.2 7.5E-12 2.6E-16 81.0 4.1 14 32-45 80-93 (362)
125 2ca6_A RAN GTPase-activating p 99.2 2.1E-11 7.3E-16 79.4 6.0 60 30-89 185-255 (386)
126 3cvr_A Invasion plasmid antige 99.2 1.5E-10 5.1E-15 79.1 10.3 33 33-67 121-153 (571)
127 3cvr_A Invasion plasmid antige 99.2 6.9E-11 2.3E-15 80.7 8.6 77 31-114 159-244 (571)
128 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.7E-15 75.0 9.0 84 2-89 28-114 (347)
129 3goz_A Leucine-rich repeat-con 99.2 1.7E-11 5.8E-16 79.3 5.2 108 4-114 21-152 (362)
130 4ay9_X Follicle-stimulating ho 99.2 6.9E-11 2.3E-15 76.2 7.1 82 5-89 30-115 (350)
131 3g06_A SSPH2 (leucine-rich rep 99.2 3.2E-10 1.1E-14 78.2 10.5 76 32-114 221-298 (622)
132 1jl5_A Outer protein YOPM; leu 99.2 3.8E-10 1.3E-14 75.1 10.4 101 3-116 151-253 (454)
133 1z7x_W Ribonuclease inhibitor; 99.1 1.5E-11 5.3E-16 81.4 2.4 13 53-65 112-124 (461)
134 1z7x_W Ribonuclease inhibitor; 99.1 1E-11 3.5E-16 82.3 1.2 63 52-114 339-412 (461)
135 4ay9_X Follicle-stimulating ho 99.1 4.2E-10 1.4E-14 72.5 8.0 86 32-117 30-121 (350)
136 3un9_A NLR family member X1; l 99.1 5.7E-11 2E-15 77.3 3.2 40 5-46 101-140 (372)
137 3un9_A NLR family member X1; l 99.1 1.1E-10 3.6E-15 76.1 3.9 109 4-115 125-254 (372)
138 3sb4_A Hypothetical leucine ri 99.1 1.8E-09 6.2E-14 69.0 9.5 85 31-116 225-313 (329)
139 3g06_A SSPH2 (leucine-rich rep 99.0 1.7E-09 5.8E-14 74.6 9.6 53 6-67 62-114 (622)
140 1io0_A Tropomodulin; LRR prote 99.0 3.1E-10 1.1E-14 67.1 4.7 110 2-115 33-166 (185)
141 3sb4_A Hypothetical leucine ri 99.0 1.7E-09 5.7E-14 69.2 8.1 99 4-107 225-328 (329)
142 3e4g_A ATP synthase subunit S, 98.9 1.6E-09 5.3E-14 63.5 4.6 79 33-111 62-150 (176)
143 3ogk_B Coronatine-insensitive 98.8 3.4E-09 1.2E-13 72.2 5.2 87 28-115 432-528 (592)
144 3e4g_A ATP synthase subunit S, 98.8 5.8E-09 2E-13 61.1 4.7 84 6-92 62-153 (176)
145 3rw6_A Nuclear RNA export fact 98.8 1.3E-08 4.6E-13 63.4 5.6 77 29-106 167-257 (267)
146 2p1m_B Transport inhibitor res 98.8 9.8E-09 3.4E-13 70.0 5.0 104 4-110 104-221 (594)
147 3ogk_B Coronatine-insensitive 98.7 4.9E-08 1.7E-12 66.6 6.9 79 3-85 162-250 (592)
148 2p1m_B Transport inhibitor res 98.7 1.1E-08 3.6E-13 69.8 3.1 84 28-112 428-518 (594)
149 1io0_A Tropomodulin; LRR prote 98.6 8E-08 2.8E-12 56.8 4.6 88 27-115 31-138 (185)
150 4fdw_A Leucine rich hypothetic 98.5 8.4E-07 2.9E-11 58.4 9.4 91 23-115 262-360 (401)
151 3rw6_A Nuclear RNA export fact 98.5 5.5E-07 1.9E-11 56.2 7.2 87 28-114 137-234 (267)
152 4fdw_A Leucine rich hypothetic 98.4 2.4E-06 8.1E-11 56.2 8.7 103 2-110 223-333 (401)
153 2ra8_A Uncharacterized protein 98.4 1.6E-07 5.6E-12 61.0 3.0 54 3-62 170-227 (362)
154 4gt6_A Cell surface protein; l 98.3 1.6E-05 5.3E-10 52.0 10.6 105 1-111 261-368 (394)
155 4h09_A Hypothetical leucine ri 98.2 1.5E-05 5.1E-10 51.8 8.5 103 2-109 237-342 (379)
156 4gt6_A Cell surface protein; l 98.1 1.9E-05 6.4E-10 51.7 8.1 104 1-111 284-389 (394)
157 3rfe_A Platelet glycoprotein I 98.1 5.3E-06 1.8E-10 46.3 4.7 54 35-89 11-66 (130)
158 2ra8_A Uncharacterized protein 98.0 1.4E-05 4.8E-10 52.0 6.3 107 4-113 138-265 (362)
159 4fs7_A Uncharacterized protein 98.0 3.8E-05 1.3E-09 50.2 7.2 101 2-110 273-376 (394)
160 1pgv_A TMD-1, tropomodulin TMD 97.8 2.5E-05 8.5E-10 46.6 4.1 106 3-111 39-168 (197)
161 4fs7_A Uncharacterized protein 97.8 0.00025 8.4E-09 46.4 9.0 103 2-110 250-353 (394)
162 4h09_A Hypothetical leucine ri 97.7 0.00017 5.7E-09 46.8 7.6 95 1-100 259-356 (379)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00028 9.5E-09 42.1 5.2 81 29-110 38-136 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0023 7.9E-08 35.5 5.5 35 33-67 32-68 (130)
165 2lz0_A Uncharacterized protein 91.5 0.26 8.7E-06 25.9 3.4 41 23-64 11-53 (100)
166 2lz0_A Uncharacterized protein 89.2 0.79 2.7E-05 24.0 4.0 39 49-88 15-53 (100)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.2e-19 Score=109.19 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=91.8
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|..+++|+.|++++|. +.+..+ ..+..+++|+.|++++|.++..+ .+..+++|++|++++|.+.+..+..+..++
T Consensus 52 ~~~l~~L~~L~Ls~N~--i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQ--ISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128 (220)
T ss_dssp STTCTTCCEEECCSSC--CCEECT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhCCCCCCEEECCCCc--CCCcCH-HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence 3567788888888887 663333 66778888888888888888743 356788888888888888877777788888
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
+|+.|++++|. .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus 129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~ 174 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLA 174 (220)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHH
Confidence 88888888887 454556777888888899888888887776654
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=108.75 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=95.0
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
..+++|+.|++++|. +. .++...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..|..+..+++
T Consensus 54 ~~l~~L~~L~L~~N~--i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 54 KKLPQLRKINFSNNK--IT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GGCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred ccCCCCCEEECCCCc--CC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 457788888888888 66 34435678888899999999988884 34778889999999999988777788888889
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
|+.|++++|. .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHH
Confidence 9999999887 444667888889999999999998887766654
No 3
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=101.84 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=100.1
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+++++|++++|. +. .++ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 31 ~~l~~L~L~~n~--i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQ--FT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSC--CC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCc--Cc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 578999999998 76 667 6788999999999999999985 35889999999999999999777788999999999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~ 123 (124)
|++++|. .+.+..+..+++|+.+++++|++.+.+.+.++..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred EECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHH
Confidence 9999998 5545568889999999999999999888777654
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=9e-18 Score=102.63 Aligned_cols=111 Identities=25% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|++|++++|. +. .++...+..+++|+.|++++|.++..+ .+..+++|++|++++|.+. ..|..+..+++
T Consensus 61 ~~l~~L~~L~L~~N~--l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 136 (229)
T 3e6j_A 61 DSLINLKELYLGSNQ--LG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH 136 (229)
T ss_dssp TTCTTCCEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT
T ss_pred hCccCCcEEECCCCC--CC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC
Confidence 345666666666665 44 333344556666666666666666632 2455666666666666666 44555566666
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|++|++++|. .+.+..+..+++|+.+++++|++.+.+
T Consensus 137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6666666665 343344566667777777777766555
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.1e-17 Score=103.41 Aligned_cols=112 Identities=25% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|++|++++|. +.+. ++..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 56 ~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQ--LQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTCTTCCEEECTTSC--CCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcccCCEEECCCCc--CCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 445666666666666 5432 224455566666666666666552 23445556666666666555443334455555
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|+.|++++|. .+.+..+..+++|+.|++++|.+..++
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 5555555554 332334455555555555555555443
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=8.8e-18 Score=100.19 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=97.6
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.++++|++++|. +.+..+...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 378999999998 76433323478899999999999999984 47888999999999999999877777889999999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
|++++|. .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~ 148 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH
Confidence 9999998 343677888999999999999999888766553
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=9.4e-17 Score=99.22 Aligned_cols=117 Identities=29% Similarity=0.314 Sum_probs=81.6
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|+.|++++|. +. .++...+..+++|+.|++++|.++..+ .+..+++|++|++++|.+.+..+..+..+++
T Consensus 80 ~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 80 DDLTELGTLGLANNQ--LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTCTTCCEEECTTSC--CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCcCCEEECCCCc--cc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 456778888888877 65 334356677778888888888777743 3566778888888888777555556777778
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc-cccccc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI-QGIQQF 121 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~l 121 (124)
|++|++++|. .+.+..+..+++|+.+++++|++.+. +.+.++
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l 201 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHH
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHH
Confidence 8888887776 44344666777788888888887766 444433
No 8
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=5.2e-17 Score=97.15 Aligned_cols=115 Identities=26% Similarity=0.404 Sum_probs=71.8
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
.+++|+.|++++|. +. .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 64 ~l~~L~~L~l~~n~--~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 64 YAHNIKDLTINNIH--AT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp GCTTCSEEEEESCC--CS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred cCCCCCEEEccCCC--CC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 45666666666664 43 222 45566677777777776665 4456666777777777777665556666667777
Q ss_pred CEEeccCCc-cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 81 QVLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 81 ~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
++|++++|. ......+..+++|+.|++++|.+++++.+..++
T Consensus 139 ~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~ 181 (197)
T 4ezg_A 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP 181 (197)
T ss_dssp CEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCS
T ss_pred CEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCC
Confidence 777777765 222235666677777777777776665544443
No 9
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=4.2e-17 Score=93.51 Aligned_cols=112 Identities=32% Similarity=0.401 Sum_probs=96.1
Q ss_pred CCCcCcEEeccccccccC-CcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 3 NLRYLQVLDLSANYNITS-GSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
..+++++|++++|. +. +.++ ..+..+++++.|++++|.++....+..+++|+++++++|.+.+..|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~--l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSR--SNEGKLE-GLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCB--CBTTBCC-SCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCc--CChhHHH-HHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 35789999999998 65 4566 56788999999999999999887788899999999999999976777777899999
Q ss_pred EEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCccc
Q 048165 82 VLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 82 ~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
++++++|. .+. +..+..+++|+.+++++|.+++.+.
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999998 221 2678899999999999999988765
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=5.1e-17 Score=107.56 Aligned_cols=117 Identities=26% Similarity=0.217 Sum_probs=88.6
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
..+++|++|++++|. +.+..+ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..|..+..+++
T Consensus 296 ~~l~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 296 SHFTDLEQLTLAQNE--INKIDD-NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTCTTCCEEECTTSC--CCEECT-TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ccCCCCCEEECCCCc--ccccCh-hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 457778888888887 663333 5677788888888888888773 35677888888888888888777777888888
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-cccc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQF 121 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l 121 (124)
|+++++++|. .+.+..+..+++|+.+++++|++++.++ +.++
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 8888888887 4534456788888888888888887764 4443
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=4.4e-17 Score=102.26 Aligned_cols=113 Identities=30% Similarity=0.280 Sum_probs=59.7
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
++++|++|++++|. +. .++...+..+++|+.|++++|.++..+ .+..+++|+.+++++|.+.+..|..+..+++|
T Consensus 127 ~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 127 GLAALQYLYLQDNA--LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp TCTTCCEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCcCCCEEECCCCc--cc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 34445555555554 33 222233444555555555555555422 24455555555555555554445555556666
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGI 118 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 118 (124)
+.+++++|. .+.+..+..+++|+.+++++|++.+.+.+
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 666666665 33234455666666666666666655544
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.1e-16 Score=99.87 Aligned_cols=110 Identities=26% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|++|++++|. +. .++...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 82 ~~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 82 KELKNLETLWVTDNK--LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp SSCTTCCEEECCSSC--CC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCc--CC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 345556666666655 44 22323444555555555555555542 12344455555555555444333333444444
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
|+.+++++|. .+.+..+..+++|+.|++++|.++.
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 4444444443 2222233344444444444444443
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=2.7e-16 Score=98.20 Aligned_cols=111 Identities=32% Similarity=0.316 Sum_probs=51.3
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
.+++|++|++++|. +.+ ++...+..+++|++|++++|.++..+ .+..+++|++|++++|.+.+..+..+..+++|
T Consensus 83 ~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 83 ELTNLTYLILTGNQ--LQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp TCTTCCEEECTTSC--CCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCc--cCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 34445555555554 432 22233444555555555555554421 23445555555555555543333334445555
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+.|++++|. .+.+..+..+++|+.|++++|.+.+.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 555555554 222223344455555555555554433
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=2.5e-16 Score=95.73 Aligned_cols=110 Identities=24% Similarity=0.296 Sum_probs=94.9
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+++++|++++|. +. .++...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 32 ~~l~~L~l~~n~--i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNT--IK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSC--CC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCc--CC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 478999999998 76 45546788999999999999999984 57889999999999999999665566788999999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
|++++|. .+.+..+..+++|+.|++++|.++.++.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 9999998 5556778899999999999999988764
No 15
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=8.3e-17 Score=94.70 Aligned_cols=115 Identities=25% Similarity=0.197 Sum_probs=94.6
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.+++++|++++|. +. .++...+..+++|+.|++++|.++..+ .+..+++|+++++++|.+.+..+..+..+++|+
T Consensus 27 ~~~l~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNK--LQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEeCCCc--cc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 4678999999998 76 445466788999999999999998853 467899999999999999966666678899999
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-cccc
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQF 121 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l 121 (124)
++++++|. .+.+..+..+++|+.+++++|++.+.+. +.++
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l 146 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHH
Confidence 99999998 5544456789999999999999987664 4443
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=5.2e-17 Score=110.85 Aligned_cols=121 Identities=26% Similarity=0.337 Sum_probs=100.0
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
..++.++.+++++|. ....+.+..+..+++|++|++++|+++.. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 466 ~~~~~L~~L~Ls~N~--~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccchhhhhhhhhhcc--cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 456788889998886 33233336788899999999999999984 46888999999999999999777788899999
Q ss_pred CCEEeccCCc--cCChhhhcCC-CCCCEEeeeccCCCCcccccccccC
Q 048165 80 LQVLDLSGNQ--NLTTLGLANL-PNLKTLDLRDCGITTIQGIQQFTSY 124 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~l~~~ 124 (124)
|++|++++|. .+.+..+..+ .+|+.|++++|++.+.+.+.++..|
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 9999999998 5546677777 5899999999999999987776543
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.5e-16 Score=94.15 Aligned_cols=109 Identities=27% Similarity=0.237 Sum_probs=54.2
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
++++|++|++++|. +. .++...+..+++|++|++++|.++..+ .+..+++|+++++++|.+.+..+..+..+++|
T Consensus 50 ~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 50 ELTSLTQLYLGGNK--LQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TCTTCSEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCCc--cC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 44555555555554 43 223233445555555555555555422 23455555555555555553333334455555
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
+++++++|. .+.+..+..+++|+.+++++|++..
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 555555554 2322334455555555555555543
No 18
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.7e-16 Score=94.92 Aligned_cols=114 Identities=25% Similarity=0.400 Sum_probs=98.8
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
+++++.|++++|. +. .++ .+..+++|+.|++++|.++.++.+..+++|+++++++|.+.+..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~--i~-~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANIN--VT-DLT--GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSC--CS-CCT--TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCC--cc-ChH--HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5689999999998 76 455 478899999999999998888889999999999999999997778889999999999
Q ss_pred eccCCc--cCChhhhcCCCCCCEEeeeccC-CCCcccccccc
Q 048165 84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCG-ITTIQGIQQFT 122 (124)
Q Consensus 84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~l~ 122 (124)
++++|. ...+..+..+++|+.|++++|. +.+++.+..++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~ 159 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCC
Confidence 999997 2226778999999999999998 88887665554
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=1.4e-16 Score=92.94 Aligned_cols=111 Identities=32% Similarity=0.411 Sum_probs=66.0
Q ss_pred CCcCcEEeccccccccC-CcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITS-GSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+++++|++++|. +. +.++ ..+..+++|+.|++++|.++....+..+++|+++++++|.+.+..|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~--l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCK--SNDGKIE-GLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCB--CBTTBCS-SCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCC--CChhhHH-HHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3556667776666 43 3444 345566666666666666666555556666666666666666444444445666666
Q ss_pred EeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCccc
Q 048165 83 LDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 83 l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
|++++|. .+. ...+..+++|+.|++++|+++..+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 6666665 221 1455566666666666666665543
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=5.1e-16 Score=96.87 Aligned_cols=113 Identities=25% Similarity=0.251 Sum_probs=79.0
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|+.|++++|. +. .++...+..+++|++|++++|.++..+ .+..+++|++|++++|.+.+..+..+..+++
T Consensus 58 ~~l~~L~~L~l~~n~--l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNK--LQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSCTTCCEEECCSSC--CS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCc--cC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 456777777777776 55 344345566777777777777777632 4566777888888877777665566777788
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
|++|++++|. .+.+..+..+++|+.|++++|.+..++.
T Consensus 135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 8888888776 4434446777888888888887776653
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.6e-16 Score=100.17 Aligned_cols=107 Identities=33% Similarity=0.288 Sum_probs=46.7
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
+++|+.|++++|. +. .++ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 76 l~~L~~L~Ls~N~--l~-~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ--LQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CTTCCEEECCSSC--CS-SCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCEEECCCCc--CC-cCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 4445555555554 33 333 2334444555555555544442 1344444455555555444433333334444444
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
.|++++|. .+.+..+..+++|+.|++++|.++.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 44444444 2222223334444444444444433
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=105.93 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=69.9
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
++++|+.|++++|. +. .++ .+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 183 ~l~~L~~L~L~~n~--l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 183 GLSNLRYLNLAMCN--LR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TCSSCCEEECTTSC--CS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred cccccCeecCCCCc--Cc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 34555555555554 43 233 244555566666666655552 345556666666666666665555666666777
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
+.|++++|. .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~ 301 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS 301 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHH
Confidence 777777776 443445566777777777777777777666553
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=6e-16 Score=94.56 Aligned_cols=110 Identities=25% Similarity=0.252 Sum_probs=94.8
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.++++.|++++|. +.+..+ ..+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 39 ~~~L~~L~Ls~n~--i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQ--ITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEcCCCc--cCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 3579999999998 774444 67889999999999999998853 468899999999999999966666778999999
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
.|++++|. .+ +..+..+++|+.|++++|.+..++.
T Consensus 116 ~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 116 ELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp EEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred eEeccCCccccc-CcccccCCCCCEEECCCCcCCccCH
Confidence 99999998 55 6778899999999999999998763
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=7.2e-16 Score=96.30 Aligned_cols=113 Identities=28% Similarity=0.240 Sum_probs=96.0
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++++|++|++++|. +.+ ++...+..+++|+.|++++|.++..+ .+..+++|+++++++|.+.+..+..+..++
T Consensus 105 ~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQ--LQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp TTTCTTCCEEECTTSC--CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hcCCcCCCEEECCCCc--CCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence 4578999999999998 774 44366788999999999999999853 467899999999999999977667788999
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+|+++++++|. .+.+..+..+++|+.+++++|++.+.+
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 99999999998 454556788999999999999987654
No 25
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-15 Score=91.86 Aligned_cols=111 Identities=29% Similarity=0.300 Sum_probs=93.6
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.++++.|++++|. +. .++...+..+++|++|++++|.++..+ .+..+++|+++++++|.+.+..+..+..+++|+
T Consensus 27 ~~~l~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNS--LK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCc--cC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 4579999999998 76 445466788999999999999999853 467899999999999999966666678999999
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
++++++|. .+.+..+..+++|+.|++++|.+++++.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 99999997 5545557889999999999999987764
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=3.9e-16 Score=106.54 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=51.2
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|++|++++|. +. .+++..|..+++|++|++++|+++.. ..+..+++|++|++++|.+.+..+..++.+++
T Consensus 73 ~~l~~L~~L~Ls~N~--i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 73 FSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTCTTCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred hCCCCCCEEECCCCc--CC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 344455555555554 43 23323444455555555555554442 13444555555555555554333334445555
Q ss_pred CCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCC
Q 048165 80 LQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 80 L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
|++|++++|. .+. +..+..++.|++|++++|.+++
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 5555555544 111 3334445555555555555543
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.7e-16 Score=100.48 Aligned_cols=113 Identities=27% Similarity=0.347 Sum_probs=56.1
Q ss_pred CCCcCcEEeccccccccCC-cccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 3 NLRYLQVLDLSANYNITSG-SLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
++++|++|++++|. +.+ ..+ ..+..+++|+.|++++|.++.. ..+..+++|+++++++|.+.+..+..+..+++
T Consensus 148 ~l~~L~~L~l~~n~--l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 148 GLSSLEVLKMAGNS--FQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TCTTCCEEECTTCE--EGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred cCcCCCEEECCCCc--cccccch-hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 34445555555554 332 122 3444555555555555555542 23445555555555555555443344455555
Q ss_pred CCEEeccCCc--cCChhhhcCCC-CCCEEeeeccCCCCcccc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLP-NLKTLDLRDCGITTIQGI 118 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~ 118 (124)
|+.+++++|. ...+..+..++ +|+.+++++|++.+.+.+
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 5555555554 22233444443 566666666666555443
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=2.4e-16 Score=104.60 Aligned_cols=114 Identities=21% Similarity=0.206 Sum_probs=63.9
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
++++|+.|++++|. +. .++ .+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 194 ~l~~L~~L~L~~n~--l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 194 GLFNLKYLNLGMCN--IK-DMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TCTTCCEEECTTSC--CS-SCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCc--cc-ccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 34445555555554 33 222 244455555555555555552 245555666666666666655555556666666
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF 121 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l 121 (124)
+.|++++|. .+.+..+..+++|+.+++++|++.+.+.+.++
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence 666666665 33334455666677777777777666665554
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=1e-15 Score=96.04 Aligned_cols=112 Identities=24% Similarity=0.238 Sum_probs=57.6
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
..+++|++|++++|. +.+..+ ..+..+++|++|++++|. ++.. ..+..+++|+++++++|.+.+..+..+..++
T Consensus 53 ~~~~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 53 RACRNLTILWLHSNV--LARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTCTTCCEEECCSSC--CCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccCCCCCEEECCCCc--cceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 345556666666665 442222 445555566666666554 4442 2444555555555555555544444455555
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+|+++++++|. .+.+..+..+++|+.|++++|.+..++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 55555555554 232233445555555555555554433
No 30
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=1.2e-15 Score=92.70 Aligned_cols=110 Identities=23% Similarity=0.249 Sum_probs=93.9
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
..+++|++++|. +.+..+...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 32 ~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 32 QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 357889999998 76443434578899999999999999985 36889999999999999999777778899999999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|++++|. .+.+..+..+++|+.|++++|.++.++
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 9999998 554677889999999999999998874
No 31
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.68 E-value=5.5e-16 Score=90.81 Aligned_cols=111 Identities=24% Similarity=0.219 Sum_probs=92.0
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
..++++++++. +. .+|. .+ .++++.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 10 ~~~~l~~s~n~--l~-~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKS--LA-SVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSC--CS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCC--cC-ccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 36789999998 76 5663 33 37899999999999995 358889999999999999997666677899999999
Q ss_pred eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-ccccc
Q 048165 84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQFT 122 (124)
Q Consensus 84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l~ 122 (124)
++++|. .+.+..+..+++|+.|++++|++.+.+. +.++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS 125 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence 999998 5645568899999999999999998874 55544
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=3.2e-16 Score=106.98 Aligned_cols=117 Identities=28% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
++++|+.|++++|. +.+......+..+++|+.|++++|.++.. ..+..+++|+++++++|.+.+..|..+..+++|
T Consensus 446 ~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 446 GLTSLNTLKMAGNS--FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred CCCCCCEEECCCCc--CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 45556666666665 44321114455666666666666666652 345566677777777776666556666666777
Q ss_pred CEEeccCCc--cCChhhhcCCC-CCCEEeeeccCCCCcccccccc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLP-NLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
+.+++++|. .+ +..+..++ +|+.+++++|++.+.+.+.++.
T Consensus 524 ~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~ 567 (606)
T 3vq2_A 524 STLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFL 567 (606)
T ss_dssp CEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSSTTHHHH
T ss_pred CEEECCCCcCccc-CHhHhhhcccCcEEEccCCCcccCCccHHHH
Confidence 777777766 34 33455555 4777777777777666655443
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=101.02 Aligned_cols=118 Identities=26% Similarity=0.354 Sum_probs=83.8
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++++|+.|++++|. +. .++...+..+++|+.|++++|.++..+ .+..+++|++|++++|.+....+..+..++
T Consensus 84 ~~~l~~L~~L~Ls~n~--i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNH--IR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160 (440)
T ss_dssp TSSCSSCCEEECCSSC--CC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred hhCCCCCCEEECCCCc--CC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence 4567788888888887 65 334356777888888888888887742 467778888888888887755555677777
Q ss_pred CCCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165 79 NLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF 121 (124)
Q Consensus 79 ~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l 121 (124)
+|++|++++|. .+.+..+..+++|+.|++++|.++.++.+..+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l 206 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTC
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCC
Confidence 88888887754 34344566777777888777777776654443
No 34
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=2.8e-16 Score=92.45 Aligned_cols=109 Identities=22% Similarity=0.189 Sum_probs=86.7
Q ss_pred CCCcCcEEeccccccccCCccccccccccc-CccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLT-NLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.+.++++|++++|. +. .++ . +..+. +|+.|++++|.++....+..+++|+++++++|.+.+..+..+..+++|+
T Consensus 17 ~~~~L~~L~l~~n~--l~-~i~-~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYK--IP-VIE-N-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSC--CC-SCC-C-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCC--Cc-hhH-H-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 57788999999998 66 444 3 44444 8999999999998887788889999999999998855434457888999
Q ss_pred EEeccCCc--cCChh--hhcCCCCCCEEeeeccCCCCccc
Q 048165 82 VLDLSGNQ--NLTTL--GLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 82 ~l~l~~~~--~~~~~--~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
++++++|. .+ +. .+..+++|+.+++++|++...+.
T Consensus 92 ~L~L~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 92 ELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp EEECCSCCCCCG-GGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred EEECCCCcCCcc-hhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 99999997 44 33 67788999999999999887765
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1.2e-15 Score=98.73 Aligned_cols=111 Identities=28% Similarity=0.319 Sum_probs=74.6
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
++++|+.|++++|. +. .++...+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+....+..+..+++|
T Consensus 62 ~l~~L~~L~L~~N~--i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNH--LN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cccccCEEECCCCc--CC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 56777777777776 55 33335566777777777777777763 246667777777777777776666667777777
Q ss_pred CEEeccCCc--cCChhhh---cCCCCCCEEeeeccCCCCcc
Q 048165 81 QVLDLSGNQ--NLTTLGL---ANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~---~~~~~L~~l~l~~n~~~~~~ 116 (124)
+.|++++|. .+....+ ..+++|+.|++++|.++.++
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 777777776 4423333 45677777777777777655
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=3e-15 Score=94.42 Aligned_cols=91 Identities=35% Similarity=0.459 Sum_probs=44.1
Q ss_pred cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107 (124)
Q Consensus 28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l 107 (124)
+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.......+..+++|+.|++
T Consensus 108 l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L 185 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEEC
Confidence 344444445555544444444444445555555555554422 334455555555555554111112555556666666
Q ss_pred eccCCCCcccccc
Q 048165 108 RDCGITTIQGIQQ 120 (124)
Q Consensus 108 ~~n~~~~~~~~~~ 120 (124)
++|.+++++.+..
T Consensus 186 ~~N~i~~l~~l~~ 198 (291)
T 1h6t_A 186 SKNHISDLRALAG 198 (291)
T ss_dssp CSSCCCBCGGGTT
T ss_pred CCCcCCCChhhcc
Confidence 6665555544433
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=1.6e-15 Score=100.58 Aligned_cols=117 Identities=25% Similarity=0.282 Sum_probs=76.0
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++++|+.|++++|. +.+ ++...+..+++|+.|++++|.++..+ .+..+++|++|++++|.+....+..+..++
T Consensus 95 ~~~l~~L~~L~Ls~n~--i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNS--IRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp TTTCTTCCEEECCSSC--CCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred cCCCCCCCEEECCCCc--cCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 3456777777777776 553 33356667777777777777777632 366677777777777777654445566667
Q ss_pred CCCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165 79 NLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120 (124)
Q Consensus 79 ~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 120 (124)
+|+.|++++|. .+....+..+++|+.|++++|.+++++.+..
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 216 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP 216 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTT
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccc
Confidence 77777776643 3333446667777777777777776665443
No 38
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.66 E-value=1.2e-15 Score=89.66 Aligned_cols=110 Identities=23% Similarity=0.223 Sum_probs=90.0
Q ss_pred CcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD 84 (124)
Q Consensus 7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 84 (124)
-+.++++++. +. .+|. .+ .++++.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 14 ~~~l~~~~n~--l~-~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIR--LA-SVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSC--CS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCC--CC-ccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 3678899988 65 5663 33 37899999999999985 3688899999999999999966555678899999999
Q ss_pred ccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-ccccc
Q 048165 85 LSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQFT 122 (124)
Q Consensus 85 l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l~ 122 (124)
+++|. .+.+..+..+++|+.|++++|++...+. +.++.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 99998 5644558899999999999999998874 55544
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=3.1e-15 Score=94.33 Aligned_cols=115 Identities=29% Similarity=0.218 Sum_probs=67.2
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|+.|++++|. +. .+++..+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+....+..+..+++
T Consensus 97 ~~l~~L~~L~l~~N~--l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 97 QTLPALTVLDVSFNR--LT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp TTCTTCCEEECCSSC--CC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred ccCCCCCEEECCCCc--Cc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 345666666666666 54 333345566666666666666666532 3455666666666666666433334455666
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 120 (124)
|+++++++|. .+ +..+.....|+.+++++|++.+.+.+.+
T Consensus 174 L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~~~ 215 (290)
T 1p9a_G 174 LDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEILY 215 (290)
T ss_dssp CCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred CCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCccHH
Confidence 6666666665 34 4445555566666666666666555443
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=9.4e-16 Score=98.14 Aligned_cols=107 Identities=31% Similarity=0.370 Sum_probs=86.7
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
++++|++|++++|. +. .++ ..+..+++|+.|++++|.++.. +.+..+++|++|++++|.+.+..|..++.+++|+
T Consensus 181 ~l~~L~~L~L~~n~--l~-~lp-~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 181 GLVNLQSLRLEWTG--IR-SLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp ESTTCCEEEEEEEC--CC-CCC-GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred cCCCCCEEECcCCC--cC-cch-HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 37788888888887 65 566 4577888899999999988884 5678888999999999888878888888889999
Q ss_pred EEeccCCc---cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 82 VLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 82 ~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
.|++++|. .+ +..+..+++|+.|++++|.+.+
T Consensus 257 ~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 257 RLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EEECTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCC
T ss_pred EEECCCCCchhhc-chhhhcCCCCCEEeCCCCCchh
Confidence 99998876 44 6678888999999999977543
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=2.3e-15 Score=94.06 Aligned_cols=112 Identities=26% Similarity=0.288 Sum_probs=70.2
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|++|++++|. +. .++...+..+++|++|++++|.++.. ..+..+++|+++++++|.+.+..+..+..+++
T Consensus 49 ~~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 49 FSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTCTTCSEEECTTCC--CC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred ccccCCcEEECCCCc--CC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 455666667776665 54 33324556666677777777766653 34566667777777776666444445666677
Q ss_pred CCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCcc
Q 048165 80 LQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 80 L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|++|++++|. .+. +..+..+++|+.|++++|.+.+++
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 7777777765 221 556667777777777777766543
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.3e-15 Score=87.78 Aligned_cols=111 Identities=33% Similarity=0.290 Sum_probs=93.0
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hh-hhccCCCCCEEEccCccccccc-hhcccCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQ-GLAKLKNLEALDLSSNYYLHGS-LEGLANLT 78 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~-~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~ 78 (124)
..+++|+.|++++|. +.+. ..+..+++|+.|++++|.++. ++ .+..+++|+++++++|.+.+.. +..+..++
T Consensus 46 ~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 46 AEFVNLEFLSLINVG--LISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp GGGGGCCEEEEESSC--CCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred HhCCCCCEEeCcCCC--CCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 467899999999998 7643 467889999999999999998 54 4556999999999999998542 26788999
Q ss_pred CCCEEeccCCc--cCCh---hhhcCCCCCCEEeeeccCCCCccc
Q 048165 79 NLQVLDLSGNQ--NLTT---LGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~---~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+|+++++++|. .+.+ ..+..+++|+.|++++|.+.+.+.
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999999998 4422 378899999999999999988774
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=4.9e-15 Score=93.41 Aligned_cols=113 Identities=32% Similarity=0.352 Sum_probs=82.5
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
..+++|+.|++++|. +. .++ . +..+++|+.|++++|.++.++.+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 65 ~~l~~L~~L~L~~n~--l~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNK--LT-DIK-P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGCTTCCEEECCSSC--CC-CCG-G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred hcCCCCCEEEccCCc--cC-CCc-c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 346778888888887 65 334 2 677888888888888888777777888888888888887743 4566778888
Q ss_pred EEeccCCccCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165 82 VLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQF 121 (124)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l 121 (124)
.|++++|.......+..+++|+.|++++|.+.+.+.+..+
T Consensus 138 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l 177 (291)
T 1h6t_A 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177 (291)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred EEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCC
Confidence 8888888722235677888888888888888877654443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=9.7e-16 Score=98.09 Aligned_cols=108 Identities=29% Similarity=0.363 Sum_probs=59.9
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccC------
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLAN------ 76 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~------ 76 (124)
+++|+.|++++|. +. .++ ..+..+++|++|++++|.++.. ..+..+++|++|++++|...+..|..+..
T Consensus 103 l~~L~~L~L~~n~--l~-~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 103 LSHLQHMTIDAAG--LM-ELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GTTCSEEEEESSC--CC-CCC-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred CCCCCEEECCCCC--cc-chh-HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 4556666666665 44 444 3455666666666666666553 35555666666666665544444443332
Q ss_pred ---CCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 77 ---LTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 77 ---~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+++|++|++++|. .+ +..+..+++|+.|++++|.+..++
T Consensus 179 ~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp EEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCC
T ss_pred hccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCc
Confidence 5555555555554 33 344555566666666666655543
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=7e-15 Score=93.38 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=5.3
Q ss_pred CCCCEEeeeccCCC
Q 048165 100 PNLKTLDLRDCGIT 113 (124)
Q Consensus 100 ~~L~~l~l~~n~~~ 113 (124)
++|+.|++++|.+.
T Consensus 195 ~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 195 PNLIEVHLKNNQIS 208 (308)
T ss_dssp TTCCEEECTTSCCC
T ss_pred CCCCEEEccCCccC
Confidence 33333333333333
No 46
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=7.6e-15 Score=93.19 Aligned_cols=112 Identities=38% Similarity=0.421 Sum_probs=72.6
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
..+++|++|++++|. +.+ ++ .+..+++|+.|++++|.++..+.+..+++|++|++++|.+.+..+ +..+++|+
T Consensus 82 ~~l~~L~~L~L~~n~--l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 154 (308)
T 1h6u_A 82 KNLTKITELELSGNP--LKN-VS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154 (308)
T ss_dssp TTCCSCCEEECCSCC--CSC-CG--GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred ccCCCCCEEEccCCc--CCC-ch--hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence 456777777777776 552 33 456677777777777777776566677777777777777664322 56667777
Q ss_pred EEeccCCccCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165 82 VLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120 (124)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 120 (124)
.|++++|.......+..+++|+.|++++|.+++++.+..
T Consensus 155 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~ 193 (308)
T 1h6u_A 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193 (308)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred EEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcC
Confidence 777777761112226667777777777777766655433
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=3.3e-15 Score=94.53 Aligned_cols=111 Identities=31% Similarity=0.324 Sum_probs=71.1
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---hhhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
..+++|+.|++++|. +.+..+ ..+..+++|+.|++++|.++. +..+..+++|+++++++|.+.+..|..+..++
T Consensus 123 ~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 123 LSLRNLIYLDISHTH--TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTCTTCCEEECTTSC--CEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhccCCCEEECCCCc--CCccch-hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 345566666666665 442323 445566677777777776654 23556667777777777777765566666777
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
+|+.+++++|. .+.+..+..+++|+.|++++|.+.+.
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 77777777776 33344566677777777777777654
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=4.9e-15 Score=98.07 Aligned_cols=110 Identities=30% Similarity=0.353 Sum_probs=96.0
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++++.+++++|. +.+..+ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 275 ~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSK--IFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSC--CCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred cCceEEEecCcc--ccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 679999999998 764445 6788999999999999999984 47888999999999999998777888999999999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
|++++|. .+.+..+..+++|+.|++++|.+++++.
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 9999998 4446778899999999999999998774
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=4e-15 Score=101.56 Aligned_cols=113 Identities=27% Similarity=0.249 Sum_probs=75.0
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|+++++|++|++++|. +.+ +++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..++.++
T Consensus 52 ~~~l~~L~~L~Ls~n~--l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCE--IET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTCTTCCEEECTTCC--CCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred ccCCccCcEEeCCCCc--ccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 3456777777777776 553 3325566777777777777777663 3566777777777777777655555667777
Q ss_pred CCCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCcc
Q 048165 79 NLQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+|++|++++|. .+. +..+..+++|++|++++|.+...+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 77777777776 212 556777777777777777776543
No 50
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=7.9e-15 Score=100.51 Aligned_cols=91 Identities=35% Similarity=0.459 Sum_probs=45.9
Q ss_pred cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107 (124)
Q Consensus 28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l 107 (124)
+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.......+..+++|+.|++
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182 (605)
T ss_dssp STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEEC
Confidence 344445555555555554444444555555555555555432 344455556666665554111112555566666666
Q ss_pred eccCCCCcccccc
Q 048165 108 RDCGITTIQGIQQ 120 (124)
Q Consensus 108 ~~n~~~~~~~~~~ 120 (124)
++|.+++++.+..
T Consensus 183 s~N~i~~l~~l~~ 195 (605)
T 1m9s_A 183 SKNHISDLRALAG 195 (605)
T ss_dssp CSSCCCBCGGGTT
T ss_pred cCCCCCCChHHcc
Confidence 6666655544433
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=5.4e-15 Score=98.55 Aligned_cols=113 Identities=28% Similarity=0.376 Sum_probs=66.6
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++++|++|++++|. +.+..+ ..+..+++|++|++++|.++..+ .+..+++|++|++++|.+.+..+..+..++
T Consensus 52 ~~~l~~L~~L~L~~n~--i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 52 FASFPHLEELELNENI--VSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTCTTCCEEECTTSC--CCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCCEEECCCCc--cCEeCh-hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 3456666777776666 543223 45666666777777666666632 345666666666666666655555566666
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+|++|++++|. .+.+..+..+++|+.|++++|.+..++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 66666666664 232344555566666666666555443
No 52
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=1.1e-14 Score=90.56 Aligned_cols=105 Identities=30% Similarity=0.400 Sum_probs=47.8
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
+++|+.|++++|. +. .++ . +..+++|+.|++++|.++..+.+.. ++|++|++++|.+.+. ..+..+++|+.|
T Consensus 62 l~~L~~L~L~~N~--i~-~~~-~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQ--IS-DLS-P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSC--CC-CCG-G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred CCCCCEEECCCCc--cC-CCh-h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCC--hhhcCcccccEE
Confidence 3444445555444 33 222 1 4444445555555554444332222 4444444444444421 234455555555
Q ss_pred eccCCccCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 84 DLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
++++|.......+..+++|+.|++++|.+++..
T Consensus 134 ~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~ 166 (263)
T 1xeu_A 134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG 166 (263)
T ss_dssp ECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCT
T ss_pred ECCCCcCCCChHHccCCCCCEEECCCCcCcchH
Confidence 555554111124455555555555555555443
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=9.9e-15 Score=93.69 Aligned_cols=113 Identities=32% Similarity=0.382 Sum_probs=83.9
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+++|+.|++++|. +. .++ .+..+++|+.|++++|.++..+.+..+++|+++++++|.+.+. ..+..+++|+.
T Consensus 219 ~~~~L~~L~l~~n~--l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 219 NMTRLNSLKIGNNK--IT-DLS--PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp GCTTCCEEECCSSC--CC-CCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cCCcCCEEEccCCc--cC-CCc--chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 46677788888877 55 333 2667788888888888887777777788888888888877743 34667788888
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
+++++|. ...+..+..+++|+.+++++|++++.+.+..++
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 333 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS 333 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCT
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhh
Confidence 8888887 343566778888888888888888876655444
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=101.76 Aligned_cols=113 Identities=26% Similarity=0.258 Sum_probs=77.2
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---hhhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
.++++|+.|++++|. +.+..+ ..+..+++|+.|++++|.++. +..+..+++|+++++++|.+.+..|..+..++
T Consensus 418 ~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 418 LSLRNLIYLDISHTH--TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTCTTCCEEECTTSC--CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hcCCCCCEEeCcCCc--ccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 345666666666665 443333 456667777777777777652 34566677778888887777766677777777
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+|+++++++|. .+.+..+..+++|+.+++++|++++.+.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 88888887776 4434556777788888888888776654
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=1.8e-15 Score=96.23 Aligned_cols=106 Identities=23% Similarity=0.325 Sum_probs=46.8
Q ss_pred CCcCcEEeccc-cccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 4 LRYLQVLDLSA-NYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 4 ~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
+++|++|++++ |. +.+.++ ..+..+++|++|++++|.++. +..+..+++|+++++++|.+.+..|..+..+++|
T Consensus 75 l~~L~~L~L~~~n~--l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 75 LPYLNFLYIGGINN--LVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp CTTCSEEEEEEETT--EESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred CCCCCeeeCCCCCc--ccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 44444444442 33 332333 334444445555554444442 2234444445555555444444444444444444
Q ss_pred CEEeccCCc---cCChhhhcCCC-CCCEEeeeccCCC
Q 048165 81 QVLDLSGNQ---NLTTLGLANLP-NLKTLDLRDCGIT 113 (124)
Q Consensus 81 ~~l~l~~~~---~~~~~~~~~~~-~L~~l~l~~n~~~ 113 (124)
++|++++|. .+ +..+..++ .|+.+++++|.+.
T Consensus 152 ~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 152 VGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEE
T ss_pred CeEECcCCcccCcC-CHHHhhhhhcCcEEECcCCeee
Confidence 444444443 12 33344443 4444444444443
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=7.4e-15 Score=95.72 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
.+++|++|++++|. +. .++...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|
T Consensus 67 ~l~~L~~L~L~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 67 SFRQVELLNLNDLQ--IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HCCCCSEEECTTSC--CC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCCc--cc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 35667777777776 55 33334566777777777777777663 245667777777777777764333335667777
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
++|++++|. .+.+..+..+++|+.|++++|.+..+
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 777777776 34344566777777777777776654
No 57
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=8.8e-15 Score=94.71 Aligned_cols=110 Identities=30% Similarity=0.290 Sum_probs=94.1
Q ss_pred CcCcEEeccccccccCCcccccccc-cccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
+.++.|++++|. +. .++...+. .+++|+.|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 39 ~~l~~L~Ls~N~--l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN--LS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC--CC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCC--CC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 347899999998 77 44435666 899999999999999985 3688999999999999999977667788999999
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
.|++++|. .+.+..+..+++|+.|++++|.++.++.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 99999998 4546778899999999999999998764
No 58
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=1.1e-14 Score=93.56 Aligned_cols=109 Identities=32% Similarity=0.383 Sum_probs=91.3
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
+..+++|++|++++|. +.+ ++ .+..+++|+.|++++|.++..+.+..+++|+.+++++|.+.+..+..+..+++|
T Consensus 239 ~~~l~~L~~L~l~~n~--l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQ--ISD-IN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp GTTCTTCCEEECCSSC--CCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred hhcCCCCCEEECCCCc--cCC-Ch--hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 3578999999999998 663 33 578899999999999999998888899999999999999998888889999999
Q ss_pred CEEeccCCccCChhhhcCCCCCCEEeeeccCCCC
Q 048165 81 QVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
+.+++++|.......+..+++|+.+++++|++++
T Consensus 314 ~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 314 TTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347 (347)
T ss_dssp SEEECCSSSCCCCGGGGGCTTCSEESSSCC----
T ss_pred CEEEccCCccccccChhhhhccceeehhhhcccC
Confidence 9999999982222338889999999999999863
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=7.1e-15 Score=93.51 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCC-CC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT-NL 80 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L 80 (124)
+++|+.|++++|. +.+.++ ..+..+++|++|++++|.++. +..+..+++|+++++++|.+.+..|..++.+. +|
T Consensus 100 l~~L~~L~Ls~n~--l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 100 LTQLHYLYITHTN--VSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp CTTCSEEEEEEEC--CEEECC-GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred CCCCCEEECcCCe--eCCcCC-HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 3444444444444 332333 233444444444444444442 12333444444444444444333333333333 33
Q ss_pred CEEeccCC
Q 048165 81 QVLDLSGN 88 (124)
Q Consensus 81 ~~l~l~~~ 88 (124)
+.+++++|
T Consensus 177 ~~L~L~~N 184 (313)
T 1ogq_A 177 TSMTISRN 184 (313)
T ss_dssp CEEECCSS
T ss_pred cEEECcCC
Confidence 33333333
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=5.3e-15 Score=99.43 Aligned_cols=115 Identities=21% Similarity=0.151 Sum_probs=57.6
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
+++|+.|++++|. +.+.++...+..+++|+.|++++|.++........++|+.+++++|.+. ..|..+..+++|+++
T Consensus 373 l~~L~~L~Ls~N~--l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSC--CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCc--CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 3444444444444 3322332223344444444444444433110000145666666666655 445545566667777
Q ss_pred eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165 84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF 121 (124)
Q Consensus 84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l 121 (124)
++++|. .+....+..+++|+.+++++|++++.+.+.++
T Consensus 450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 776665 34222355666777777777777666554443
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.1e-14 Score=90.69 Aligned_cols=112 Identities=27% Similarity=0.305 Sum_probs=92.1
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+++|+.|++++|. +. .++ .+..+++|+.|++++|.++..+.+..+++|++|++++|.+.+. +. +.. ++|+.
T Consensus 39 ~l~~L~~L~l~~n~--i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~ 110 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN--IQ-SLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSR 110 (263)
T ss_dssp HHTTCSEEECTTSC--CC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCE
T ss_pred hcCcCcEEECcCCC--cc-cch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc-Cc-ccc-CcccE
Confidence 46789999999998 66 445 5788999999999999999976688999999999999999853 33 233 89999
Q ss_pred EeccCCccCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 83 LDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
|++++|.......+..+++|+.|++++|.+++++.+..+.
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~ 150 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLS 150 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCT
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCC
Confidence 9999998222446889999999999999999887665544
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.59 E-value=1.3e-14 Score=99.12 Aligned_cols=110 Identities=21% Similarity=0.128 Sum_probs=51.4
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|++|++++|. +.+..+ ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 54 ~~l~~L~~L~Ls~n~--i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQ--IYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTCTTCSEEECTTCC--CCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred ccCccceEEECCCCc--cceeCh-hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 344555555555554 332222 3444555555555555554442 23444555555555555554433444445555
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
|++|++++|. .+....+..+++|+.|++++|.+..
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 5555555554 2212233334555555555555443
No 63
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=1.9e-14 Score=98.61 Aligned_cols=114 Identities=32% Similarity=0.355 Sum_probs=89.2
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
..+++|+.|++++|. +.+ ++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 62 ~~l~~L~~L~Ls~N~--l~~-~~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNK--LTD-IK--PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134 (605)
T ss_dssp GGCTTCCEEECTTSC--CCC-CG--GGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred ccCCCCCEEEeeCCC--CCC-Ch--hhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence 457888889998887 663 34 2678888999999999888877888888999999999988743 4577888999
Q ss_pred EEeccCCccCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165 82 VLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122 (124)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~ 122 (124)
.|++++|.......+..+++|+.|++++|.+.+.+.+..+.
T Consensus 135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~ 175 (605)
T 1m9s_A 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 175 (605)
T ss_dssp EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred EEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCC
Confidence 99999887222357788899999999999988776554443
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=5.4e-15 Score=93.85 Aligned_cols=113 Identities=27% Similarity=0.274 Sum_probs=63.0
Q ss_pred CCCcCcEEeccccccccCCc--cc-ccccccccCccEEeccCCCCcchhh-----hccCCCCCEEEccCccccccchhcc
Q 048165 3 NLRYLQVLDLSANYNITSGS--LT-RLGLANLTNLKKLDLDGCGITTIQG-----LAKLKNLEALDLSSNYYLHGSLEGL 74 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~--~~-~~~~~~~~~l~~L~l~~~~l~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~ 74 (124)
.+++|++|++++|. +.+. ++ ...+..+++|++|++++|.++..+. +..+++|++|++++|.+.+..|..+
T Consensus 167 ~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 167 AFPALTSLDLSDNP--GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCTTCCEEECCSCT--TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred cCCCCCEEECCCCC--CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 45555555555554 2211 11 1112345556666666666654321 3456677777777777765555555
Q ss_pred cCC---CCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165 75 ANL---TNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120 (124)
Q Consensus 75 ~~~---~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 120 (124)
..+ ++|++|++++|. .+ +..+ .++|+.|++++|.+++++....
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~~~~~~ 292 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRAPQPDE 292 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSCCCTTS
T ss_pred HhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCCchhhh
Confidence 544 577777777776 33 2222 2577777777777776654433
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=1.5e-14 Score=97.96 Aligned_cols=112 Identities=26% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++++|++|++++|. +. .++...+..+++|++|++++|.++.. ..+..+++|+++++++|.+....+..++.++
T Consensus 48 ~~~l~~L~~L~Ls~n~--i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 48 FFSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTCSSCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hhCCCCceEEECCCCc--CC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 3456677777777776 55 23334566677777777777776663 3566677777777777776644334566777
Q ss_pred CCCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCc
Q 048165 79 NLQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
+|++|++++|. .+. +..+..+++|++|++++|.+...
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 77777777775 211 55667777777777777776654
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=2e-14 Score=95.82 Aligned_cols=113 Identities=28% Similarity=0.349 Sum_probs=94.0
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.++++|+.|++++|. +. .++...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..++
T Consensus 76 ~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNR--LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TTTCTTCCEEECCSSC--CC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred hhCCccCCEEECCCCc--CC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 4678899999999998 76 45546678899999999999998883 4678889999999999999877778888999
Q ss_pred CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+|+.|++.+|. .+.+..+..+++|+.|++++|.+...+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 99999999887 554556788889999999888877654
No 67
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=6.7e-15 Score=102.69 Aligned_cols=109 Identities=24% Similarity=0.266 Sum_probs=93.7
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
..++.|+.|++++|. +. .++ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+. ..|..++.+.+|
T Consensus 221 ~~l~~L~~L~Ls~n~--l~-~l~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ--IF-NIS-ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp -CCCCCCEEECTTSC--CS-CCC-GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred ccCCCCcEEECCCCC--CC-CCC-hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 457889999999998 66 566 3455899999999999999874 57889999999999999999 778889999999
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
++|++++|. .+ |..+..+++|+.|++++|.++...
T Consensus 296 ~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 296 KYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp SEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCC
Confidence 999999997 56 666899999999999999998643
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=3.2e-14 Score=88.85 Aligned_cols=108 Identities=28% Similarity=0.329 Sum_probs=92.2
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+++++|++++|. +. .++...+..+++|++|++++|.++.. ..+..+++|+++++++|.+.+..+..+..+++|++
T Consensus 28 ~~l~~L~ls~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNP--LR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCC--CC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCc--cc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 359999999998 76 44435788899999999999999884 36888999999999999999777788899999999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
+++.+|. .+.+..+..+++|+.|++++|.+..+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 139 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCcccee
Confidence 9999997 44344688899999999999999873
No 69
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=1.8e-14 Score=101.03 Aligned_cols=107 Identities=33% Similarity=0.329 Sum_probs=48.2
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
+++|+.|++++|. +.+.++ ..+..+++|+.|++++|.+++ +..+..+++|+++++++|.+.+..|..+..+++|+
T Consensus 417 l~~L~~L~Ls~N~--l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 417 CSELVSLHLSFNY--LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp CTTCCEEECCSSE--EESCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCCEEECcCCc--ccCccc-HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 4445555555554 333333 334444444444444444443 22344444444444444444444444444444444
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~ 113 (124)
.+++++|. ...|..++.+++|+.|++++|.++
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 55444444 111334444444444444444443
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.2e-14 Score=99.48 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=74.9
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
++++|+.|++++|. +.+ ++...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..++.+++|
T Consensus 73 ~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 73 SFRQVELLNLNDLQ--IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HCCCCSEEECTTSC--CCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCcEEECCCCC--CCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 35677777777776 553 3325667777777777777777773 245677777777777777774444445677777
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
++|++++|. .+.+..+..+++|+.|++++|.+..+
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 777777776 44345567777777777777777654
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.57 E-value=2.4e-14 Score=97.77 Aligned_cols=108 Identities=24% Similarity=0.284 Sum_probs=94.4
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+.+++|++++|. +.+ +++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..|..++.+++|++
T Consensus 33 ~~l~~L~Ls~n~--i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNV--LPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCC--CSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCc--cCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 468999999998 774 4437889999999999999999883 46889999999999999999888889999999999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
|++++|. .+.+..+..+++|++|++++|.+.++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 9999997 44456788999999999999999876
No 72
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.57 E-value=1.6e-14 Score=101.28 Aligned_cols=108 Identities=30% Similarity=0.313 Sum_probs=97.7
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++++|+.|++++|. +.+.++ ..+..+++|++|++++|.+++ +..+..+++|+++++++|.+.+..|..++.+++
T Consensus 439 ~~l~~L~~L~L~~n~--l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNM--LEGEIP-QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGCTTCCEEECCSSC--CCSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hcCCCCCEEECCCCc--ccCcCC-HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 467899999999999 776777 678899999999999999986 457889999999999999999999999999999
Q ss_pred CCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCC
Q 048165 80 LQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 80 L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~ 113 (124)
|+++++++|. .+ |..+..+++|+.+++++|+++
T Consensus 516 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 516 LAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSSEEE
T ss_pred CCEEECCCCcccCcC-CHHHcCCCCCCEEECCCCccC
Confidence 9999999998 44 788999999999999999987
No 73
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=9.5e-14 Score=82.80 Aligned_cols=104 Identities=28% Similarity=0.353 Sum_probs=88.4
Q ss_pred cEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEecc
Q 048165 8 QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86 (124)
Q Consensus 8 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 86 (124)
+.++.+++. +. .+|. .+ .++++.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 13 ~~l~~~~~~--l~-~ip~-~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKG--LK-VLPK-GI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSC--CS-SCCS-CC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC--CC-cCCC-CC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 567888887 66 5662 22 36899999999999985 578889999999999999997777889999999999999
Q ss_pred CCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 87 GNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 87 ~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+|. .+.+..+..+++|+.|++++|.++.++.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 998 5656678899999999999999998774
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=2.6e-14 Score=98.76 Aligned_cols=95 Identities=23% Similarity=0.280 Sum_probs=49.7
Q ss_pred cccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhc-CCCCCCE
Q 048165 30 NLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLA-NLPNLKT 104 (124)
Q Consensus 30 ~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~-~~~~L~~ 104 (124)
.+++|+.|++++|.++..+ .+..+++|+.+++++|.+++..+..+..+++|+.+++++|. .+.+..+. .+++|+.
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE
T ss_pred CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE
Confidence 3444444444444444422 24445555555555555553333344455566666666655 33233343 4566777
Q ss_pred EeeeccCCCCcccc-cccccC
Q 048165 105 LDLRDCGITTIQGI-QQFTSY 124 (124)
Q Consensus 105 l~l~~n~~~~~~~~-~~l~~~ 124 (124)
+++++|++.+.+.. .++..|
T Consensus 614 l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 614 LDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp EECTTCCCCBCCCCCSSEECC
T ss_pred EEccCCCcccCCccHHHHHHH
Confidence 77777777766653 555443
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=1.4e-14 Score=100.13 Aligned_cols=108 Identities=28% Similarity=0.202 Sum_probs=46.9
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
+++|++|++++|. +.+..+ ..+..+++|++|++++|.++..+ .+..+++|+++++++|.+.+..+..++.+++|+
T Consensus 48 l~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 48 YSQLTSLDVGFNT--ISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GTTCSEEECCSSC--CCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred CCcCcEEECCCCc--cCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 3444444444444 332222 33444444444444444444422 244444455555554444433333444444555
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
++++++|. .+.+..+..+++|++|++++|.++.
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 55554443 2212333444444444444444443
No 76
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.57 E-value=2.7e-14 Score=93.05 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=94.9
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
+++++.++++++. +. .++...+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 44 l~~l~~l~l~~~~--l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNST--MR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCE--ES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCc--hh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 5788999999998 66 56656678899999999999999884 4788999999999999999977778889999999
Q ss_pred EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+|++++|. .+....+..+++|++|++++|.+...+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99999998 553444688999999999999998765
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=3.4e-15 Score=95.10 Aligned_cols=107 Identities=24% Similarity=0.264 Sum_probs=59.0
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhh-ccCCCCCEEEccCccccccchhcccCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGL-AKLKNLEALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
+++|+.|++++|. +.+ ++...+..+++|+.|++++|.++.. ..+ ..+++|+++++++|.+.+. + ....+++|
T Consensus 119 ~~~L~~L~l~~N~--l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L 193 (317)
T 3o53_A 119 GQGKKNIYLANNK--ITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKL 193 (317)
T ss_dssp CSSCEEEECCSSC--CCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTC
T ss_pred cCCCCEEECCCCC--CCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccC
Confidence 4566667777766 553 2324555666666666666666652 222 2456666666666665533 1 22235566
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+++++++|. .+ +..+..+++|+.|++++|.++.++
T Consensus 194 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 194 KTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp CEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchh
Confidence 666666665 33 233555556666666666555544
No 78
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=2.4e-14 Score=81.92 Aligned_cols=103 Identities=30% Similarity=0.312 Sum_probs=85.3
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hh-hhccCCCCCEEEccCcccccc-chhcccCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQ-GLAKLKNLEALDLSSNYYLHG-SLEGLANL 77 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~ 77 (124)
+..+++|+.|++++|. +.+. ..+..+++|+.|++++|.++. .+ .+..+++|+++++++|.+.+. .+..+..+
T Consensus 38 ~~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 38 TDEFEELEFLSTINVG--LTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp CTTCTTCCEEECTTSC--CCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred HhhcCCCcEEECcCCC--CCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence 3578999999999998 7643 467889999999999999998 54 455699999999999999863 34778899
Q ss_pred CCCCEEeccCCc--cCCh---hhhcCCCCCCEEeee
Q 048165 78 TNLQVLDLSGNQ--NLTT---LGLANLPNLKTLDLR 108 (124)
Q Consensus 78 ~~L~~l~l~~~~--~~~~---~~~~~~~~L~~l~l~ 108 (124)
++|+++++++|. .+.+ ..+..+++|+.++++
T Consensus 113 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 113 ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999998 4422 367889999999875
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=3.8e-14 Score=100.21 Aligned_cols=113 Identities=31% Similarity=0.385 Sum_probs=69.5
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhc--ccC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEG--LAN 76 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~ 76 (124)
|.++++|+.|++++|. ..+.+++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+.. +..
T Consensus 44 ~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred CcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 3456666666666664 33344335566677777777777766662 35666777777777777666544433 566
Q ss_pred CCCCCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCc
Q 048165 77 LTNLQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 77 ~~~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
+++|++|++++|. .+. +..++.+++|+.|++++|.+...
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 6777777777765 221 23566677777777777766543
No 80
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.1e-14 Score=92.55 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=52.0
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccch-hcccCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSL-EGLANLTN 79 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~ 79 (124)
++++|+.|++++|. +.+ ++...+..+++|++|++++|.++..+ .+..+++|+++++++|.+..... ..+..+++
T Consensus 74 ~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 74 RCVNLQALVLTSNG--INT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TCTTCCEEECTTSC--CCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred cCCCCCEEECCCCc--cCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 44555555555554 432 22134445555555555555555421 24455555555555555542222 23445555
Q ss_pred CCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCC
Q 048165 80 LQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 80 L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
|+++++++|. .+.+..+..+++|+.+++++|.+.+
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 5555555542 2223344445555555555555443
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.56 E-value=1.1e-13 Score=92.18 Aligned_cols=108 Identities=33% Similarity=0.343 Sum_probs=50.9
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+++|+.|++++|. +.+ ++ .+..+++|+.|++++|.++..+.+..+++|+.+++++|.+.+..+ +..+++|+.
T Consensus 263 ~l~~L~~L~l~~n~--l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 263 GLTKLTELKLGANQ--ISN-IS--PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TCTTCSEEECCSSC--CCC-CG--GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred cCCCCCEEECCCCc--cCc-cc--cccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 34444445554444 331 22 134455555555555555544334455555555555555543322 344455555
Q ss_pred EeccCCccCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 83 LDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+++.+|.......+..+++|+.+++++|.+++...
T Consensus 336 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred eECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 55555541112344455555555555555554443
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=4.6e-14 Score=90.17 Aligned_cols=83 Identities=34% Similarity=0.416 Sum_probs=44.5
Q ss_pred CccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeee
Q 048165 33 NLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLR 108 (124)
Q Consensus 33 ~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~ 108 (124)
+|+.|++++|.++.. ..+..+++|+++++++|.+.+..+..+..+++|+.+++++|. .+ +..+..+++|+.++++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECC
Confidence 344444444444432 244455566666666666554444455555666666666665 33 3445555666666666
Q ss_pred ccCCCCcc
Q 048165 109 DCGITTIQ 116 (124)
Q Consensus 109 ~n~~~~~~ 116 (124)
+|.++.++
T Consensus 272 ~N~i~~~~ 279 (330)
T 1xku_A 272 NNNISAIG 279 (330)
T ss_dssp SSCCCCCC
T ss_pred CCcCCccC
Confidence 66665544
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=6e-14 Score=95.60 Aligned_cols=105 Identities=30% Similarity=0.361 Sum_probs=92.3
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD 84 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 84 (124)
.|+.|++++|. +. .+| . +..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+ .| .++.+++|+.|+
T Consensus 442 ~L~~L~Ls~n~--l~-~lp-~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKD--LT-VLC-H-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSC--CS-SCC-C-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCC--CC-CCc-C-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 57899999998 77 466 3 88999999999999999984 588899999999999999995 56 788999999999
Q ss_pred ccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCccc
Q 048165 85 LSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 85 l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+++|. .+. |..+..+++|+.|++++|++++.+.
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99998 443 6789999999999999999988764
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=4.3e-14 Score=95.99 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=38.9
Q ss_pred CCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165 54 KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120 (124)
Q Consensus 54 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 120 (124)
++|+++++++|.+. ..|..+..+++|+.+++++|. .+.+..+..+++|+.+++++|++.+.+.+.+
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 45666666666655 444444466666777776666 4422225666667777777777666554433
No 85
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=5.2e-15 Score=101.87 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=82.5
Q ss_pred CCCCcCcEEeccccccccCCc-----------------ccccccc--cccCccEEeccCCCCcc--hhhhccCCCCCEEE
Q 048165 2 ANLRYLQVLDLSANYNITSGS-----------------LTRLGLA--NLTNLKKLDLDGCGITT--IQGLAKLKNLEALD 60 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~-----------------~~~~~~~--~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~ 60 (124)
.++++|++|++++|. +.+. +| ..+. .+++|++|++++|.+.+ +..+..+++|++|+
T Consensus 203 ~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP--FVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred hcccCCCEEECcCCc--cccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 457788888888887 6653 56 4566 78888888888887666 35677788888888
Q ss_pred ccCcc-ccc-cchhcccCC------CCCCEEeccCCc--cCChh--hhcCCCCCCEEeeeccCCC-Ccccc
Q 048165 61 LSSNY-YLH-GSLEGLANL------TNLQVLDLSGNQ--NLTTL--GLANLPNLKTLDLRDCGIT-TIQGI 118 (124)
Q Consensus 61 l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~--~~~~~--~~~~~~~L~~l~l~~n~~~-~~~~~ 118 (124)
+++|. +.+ ..|..++.+ ++|++|++++|. .+ +. .+..+++|+.|++++|.+. .++.+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip~~ 349 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLPAF 349 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECCCC
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchhhh
Confidence 88887 776 567666554 788888888876 44 44 6777888888888888777 55533
No 86
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=8.7e-14 Score=82.85 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=87.1
Q ss_pred CcEEeccccccccCCcccccccccccCccEEeccCCCCcchh---hhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
.+.++++++. +. .+|. .+. .+++.|++++|.++..+ .+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 10 ~~~l~~s~~~--l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 10 GTTVDCTGRG--LK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TTEEECTTSC--CS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCEEEcCCCC--cC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 4678999988 65 5663 332 38999999999998853 37899999999999999998888899999999999
Q ss_pred eccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
++++|. .+.+..+..+++|+.|++++|.++...
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC
Confidence 999998 443556888999999999999998763
No 87
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=3.7e-14 Score=91.16 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=90.5
Q ss_pred cEEecccc-ccccCCcccccccccccCccEEeccC-CCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 8 QVLDLSAN-YNITSGSLTRLGLANLTNLKKLDLDG-CGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 8 ~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~l~~-~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
..++.+++ . +. .+| . +..+++|+.|++++ |.++.. ..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 11 ~~v~~~~~n~--l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGA--LD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCC--CT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCC--CC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 34677776 6 65 577 4 88899999999996 999984 368899999999999999998888889999999999
Q ss_pred eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165 84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123 (124)
Q Consensus 84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~ 123 (124)
++++|. .+.+..+..++ |+.|++.+|++.+.+.+.++..
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~ 126 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQR 126 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHH
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHH
Confidence 999998 55344445555 9999999999999888776643
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=2.4e-14 Score=91.00 Aligned_cols=109 Identities=30% Similarity=0.345 Sum_probs=57.1
Q ss_pred CCCcCcEEeccccccccCCccccccc-ccccCccEEeccCCCCcch-hhhccC-----CCCCEEEccCccccccchhccc
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGL-ANLTNLKKLDLDGCGITTI-QGLAKL-----KNLEALDLSSNYYLHGSLEGLA 75 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~l~~~-~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~ 75 (124)
++++|++|++++|. +.+..+...+ ..+++|+.|++++|.++.. ..+..+ ++|++|++++|.+.+..+..++
T Consensus 93 ~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLE--VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEB--CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCc--ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 35666666666666 5544442221 5566666666666666552 222222 5566666666665544445555
Q ss_pred CCCCCCEEeccCCccCC----hhhh--cCCCCCCEEeeeccCCC
Q 048165 76 NLTNLQVLDLSGNQNLT----TLGL--ANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 76 ~~~~L~~l~l~~~~~~~----~~~~--~~~~~L~~l~l~~n~~~ 113 (124)
.+++|++|++++|.... +..+ ..+++|+.|++++|.+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 55566666665554110 1122 44455555555555554
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=8e-14 Score=95.38 Aligned_cols=110 Identities=22% Similarity=0.192 Sum_probs=86.3
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|..+++|+.|++++|. +.+ +++..+..+++|+.|++++|.++..+ .+..+++|++|++++|.+.+..|..+..++
T Consensus 95 ~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNA--IRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTCTTCCEEECCSSC--CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred hcCCCCCCEEECCCCc--CCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 4678899999999998 774 44367889999999999999999853 367899999999999999988788899999
Q ss_pred CCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCC
Q 048165 79 NLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 79 ~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
+|++|++++|... ...+..+++|+.+++++|.+..
T Consensus 172 ~L~~L~L~~N~l~-~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 172 SLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp TCCEEECTTSCCS-BCCGGGCTTCSEEECCSSCCSE
T ss_pred cCcEEECcCCCCC-CcChhhhhhhhhhhcccCcccc
Confidence 9999999999711 1234445556555555555544
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.54 E-value=1.3e-13 Score=88.03 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=53.9
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
++++|+.|++++|. +.+..+ ..+..+++|++|++++|.++..+ .+ .++|+++++++|.+.+..+..+..+++|+
T Consensus 74 ~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 74 NLKNLHTLILINNK--ISKISP-GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TCTTCCEEECCSSC--CCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred cCCCCCEEECCCCc--CCeeCH-HHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCcccccCHhHhcCCcccc
Confidence 44555555555554 432222 34445555555555555544422 11 13455555555555444444455566666
Q ss_pred EEeccCCcc----CChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 82 VLDLSGNQN----LTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 82 ~l~l~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
.+++++|.. +.+..+..+++|+.+++++|.+..++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 666666541 22344555666666666666555443
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=93.17 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch----hhhccCCCCCEEEccCccccccchhc-ccC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI----QGLAKLKNLEALDLSSNYYLHGSLEG-LAN 76 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~ 76 (124)
..+++|+.|++++|. +.+..+ ..+..+++|+.|++++|.++.. ..+..+++|+++++++|.+.+..|.. +..
T Consensus 321 ~~l~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL--LTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSC--CCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCc--cChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 456778888888887 665455 5667788888888888887762 24667777888888887777534432 444
Q ss_pred CCCCCEEe----------------------ccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 77 LTNLQVLD----------------------LSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 77 ~~~L~~l~----------------------l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+++|++++ +++|. .+ +..+..+++|+.+++++|.++.++.
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~ 461 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPD 461 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCH
Confidence 44455554 44444 33 3334466666666666666666553
No 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.53 E-value=3.6e-14 Score=95.89 Aligned_cols=103 Identities=35% Similarity=0.340 Sum_probs=50.5
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 83 (124)
++++|++++|. +.+..+ ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..++.+++|++|
T Consensus 27 ~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNK--ITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSC--CCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CccEEECcCCc--cCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 45555555555 442222 3445555555555555555552 234455555555555555554444445555555555
Q ss_pred eccCCc--cCC-hhhhcCCCCCCEEeeeccC
Q 048165 84 DLSGNQ--NLT-TLGLANLPNLKTLDLRDCG 111 (124)
Q Consensus 84 ~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~ 111 (124)
++++|. .+. +..+..+++|++|++++|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 555554 111 2234444555555555544
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=2.8e-14 Score=87.44 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=34.2
Q ss_pred cccccCccEEeccC-CCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC---EEeccCC-c--cCChhhhcC
Q 048165 28 LANLTNLKKLDLDG-CGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ---VLDLSGN-Q--NLTTLGLAN 98 (124)
Q Consensus 28 ~~~~~~l~~L~l~~-~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~--~~~~~~~~~ 98 (124)
+..+++|+.|++++ |.++.. ..+..+++|+++++++|.+.+ .|. +..+++++ ++++++| . .+.+..+..
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 34444444444444 444432 123344444444444444432 222 33333333 4444444 2 222223344
Q ss_pred CCCCC-EEeeeccCCCC
Q 048165 99 LPNLK-TLDLRDCGITT 114 (124)
Q Consensus 99 ~~~L~-~l~l~~n~~~~ 114 (124)
+++|+ .+++++|.++.
T Consensus 154 l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTS 170 (239)
T ss_dssp TBSSEEEEECCSCCCCE
T ss_pred hhcceeEEEcCCCCCcc
Confidence 44444 44444444443
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1e-14 Score=103.31 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=45.7
Q ss_pred cccCccEEeccCCCCcc--hhhhccCCCCCEEEccCcc-ccc-cchhcccC-------CCCCCEEeccCCc--cCChh--
Q 048165 30 NLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNY-YLH-GSLEGLAN-------LTNLQVLDLSGNQ--NLTTL-- 94 (124)
Q Consensus 30 ~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~-------~~~L~~l~l~~~~--~~~~~-- 94 (124)
.+++|+.|++++|.+.. +..+..+++|+.|++++|. +.+ ..|..++. +++|+.|++++|. .+ |.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChh
Confidence 56666666666665444 2345556666666666665 544 34443332 2355566555554 33 33
Q ss_pred hhcCCCCCCEEeeeccCCCCcc
Q 048165 95 GLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 95 ~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
.+..+++|+.|++++|.+..+|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC
T ss_pred hhhcCCCCCEEECCCCCcccch
Confidence 4555555555555555555444
No 95
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=93.22 Aligned_cols=113 Identities=25% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh---hhccCCCCCEEEccCc-cccccchhcccC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSN-YYLHGSLEGLAN 76 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~-~~~~~~~~~~~~ 76 (124)
|.++++|++|++++|. +. .++...+..+++|++|++++|.++..+ .+..+++|+++++++| .+....+..+..
T Consensus 96 ~~~l~~L~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNY--LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTCTTCCEEECCSSC--CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred cCCCCCCCEEECCCCc--CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 3567788888888887 66 345345777888888888888877743 3667788888888877 355444566777
Q ss_pred CCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 77 LTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 77 ~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+++|+++++++|. .+.+..+..+++|++|++++|.+..++
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 7777777777775 222455566666666666666654433
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=1.1e-14 Score=97.57 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=70.3
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhc-cCCCCCEEEccCccccccchhcccCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLA-KLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.+++|+.|++++|. +.+..+ ..+..+++|+.|++++|.++. +..+. .+++|++|++++|.+.+. .....+++
T Consensus 118 ~l~~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~ 192 (487)
T 3oja_A 118 RGQGKKNIYLANNK--ITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAK 192 (487)
T ss_dssp CCSSCEEEECCSSC--CCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTT
T ss_pred ccCCCCEEECCCCC--CCCCCc-hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCC
Confidence 35677778888877 664434 556677778888888877776 23443 567777777777777643 22334667
Q ss_pred CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
|+.|++++|. .+ +..+..+++|+.|++++|.++.+|
T Consensus 193 L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp CCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccc
Confidence 7777777776 33 334666677777777777776655
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.52 E-value=2.4e-13 Score=90.53 Aligned_cols=91 Identities=29% Similarity=0.338 Sum_probs=45.9
Q ss_pred cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107 (124)
Q Consensus 28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l 107 (124)
+..+++|+.|++++|.++..+.+..+++|+.+++++|.+.+..+ +..+++|+.+++++|.......+..+++|+.|++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeEC
Confidence 34445555555555555443334445555555555555543222 4455556666666555111122455666666666
Q ss_pred eccCCCCcccccc
Q 048165 108 RDCGITTIQGIQQ 120 (124)
Q Consensus 108 ~~n~~~~~~~~~~ 120 (124)
++|.+.+++.+..
T Consensus 339 ~~n~l~~~~~l~~ 351 (466)
T 1o6v_A 339 YNNKVSDVSSLAN 351 (466)
T ss_dssp CSSCCCCCGGGTT
T ss_pred CCCccCCchhhcc
Confidence 6666665544433
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1.8e-14 Score=88.35 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=42.2
Q ss_pred EEeccCC-CCcchh--hhccCCCCC-EEEccCccccccchhcccCCCCCCEEeccCCc---cCChhhhcCC-CCCCEEee
Q 048165 36 KLDLDGC-GITTIQ--GLAKLKNLE-ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ---NLTTLGLANL-PNLKTLDL 107 (124)
Q Consensus 36 ~L~l~~~-~l~~~~--~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~-~~L~~l~l 107 (124)
.+++++| .++..+ .+..+++|+ .+++++|.+. ..|.......+|+.+++++|+ .+.+..+..+ ++|+.+++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 4444444 444421 244555566 6666666555 222222222556666666662 3333445566 67777777
Q ss_pred eccCCCCcc
Q 048165 108 RDCGITTIQ 116 (124)
Q Consensus 108 ~~n~~~~~~ 116 (124)
++|.++.++
T Consensus 213 ~~N~l~~l~ 221 (239)
T 2xwt_C 213 SQTSVTALP 221 (239)
T ss_dssp TTCCCCCCC
T ss_pred CCCccccCC
Confidence 777776655
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.51 E-value=1.1e-13 Score=93.61 Aligned_cols=112 Identities=25% Similarity=0.331 Sum_probs=93.2
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-h-hhccCCCCCEEEccCcccccc-chhcccCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-Q-GLAKLKNLEALDLSSNYYLHG-SLEGLANL 77 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~ 77 (124)
|.++++|++|++++|. +.+. ++..+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+. .|..++.+
T Consensus 46 ~~~l~~L~~L~Ls~n~--i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 46 LRACANLQVLILKSSR--INTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp TSSCTTCCEEECTTSC--CCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhcCCcccEEECCCCC--cCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 4678999999999998 7744 436788999999999999999884 3 488999999999999998853 45678899
Q ss_pred CCCCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 78 TNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 78 ~~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
++|+++++++|. .+.+..+..+++|++|++++|.+...
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 999999999886 34345788899999999999998763
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=87.69 Aligned_cols=109 Identities=26% Similarity=0.234 Sum_probs=53.6
Q ss_pred CCCCcCcEEeccccccccCCcccccccccc-----cCccEEeccCCCCcch--hhhccCCCCCEEEccCcccccc--chh
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANL-----TNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHG--SLE 72 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-----~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~ 72 (124)
..+++|++|++++|. +.+. + ..+..+ ++|++|++++|.++.. ..+..+++|+++++++|.+.+. .+.
T Consensus 118 ~~l~~L~~L~Ls~N~--l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS--WATR-D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CCSCCCSEEEEESCB--CSSS-S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred hcCCCccEEEccCCC--Ccch-h-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 455666666666666 5433 3 333333 5566666666655552 2455555566666665554322 122
Q ss_pred cc--cCCCCCCEEeccCCc-c-C---ChhhhcCCCCCCEEeeeccCCCC
Q 048165 73 GL--ANLTNLQVLDLSGNQ-N-L---TTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 73 ~~--~~~~~L~~l~l~~~~-~-~---~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
.+ ..+++|++|++++|. . + ....+..+++|+.|++++|.+.+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 22 445555555555554 1 1 00112244555555555555544
No 101
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.49 E-value=3.3e-13 Score=86.29 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=54.2
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++++.|++++|. +. .+++..+..+++|++|++++|.++.. ..+..+++|+++++++|.+. ..|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNND--IS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCE
T ss_pred CCCeEEECCCCc--CC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCE
Confidence 355666666665 44 22224455666666666666666552 34555666666666666555 3333222 45555
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~ 113 (124)
+++++|. .+.+..+..+++|+.|++++|.+.
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 5555554 332333455555555555555543
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=3e-13 Score=90.69 Aligned_cols=105 Identities=27% Similarity=0.259 Sum_probs=55.9
Q ss_pred CCcCcEEeccccccccCCcccccccc-cccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+++|+.|++++|. +.+..+ ..+. .+++|+.|++++|.++..+....+++|++|++++|.+.+. |..+..+++|+.
T Consensus 143 l~~L~~L~Ls~N~--l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~ 218 (487)
T 3oja_A 143 RSRVQYLDLKLNE--IDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW 218 (487)
T ss_dssp GSSEEEEECTTSC--CCEEEG-GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE
T ss_pred CCCCCEEECCCCC--CCCcCh-HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC-CHhHcCCCCccE
Confidence 4555556666665 443333 2222 4556666666666655544444455566666666665533 233555556666
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~ 113 (124)
+++++|. .+ |..+..+++|+.+++++|++.
T Consensus 219 L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 219 ISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTSCCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred EEecCCcCccc-chhhccCCCCCEEEcCCCCCc
Confidence 6666555 33 334455555666666666555
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=3.6e-13 Score=95.29 Aligned_cols=110 Identities=30% Similarity=0.330 Sum_probs=89.1
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++++.|++++|. +.+..+ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 266 ~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGF--VFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCC--CCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred CCccEEECCCCc--ccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 678899999987 664433 6778889999999999988873 46778889999999999988777778888899999
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+++++|. .+.+..+..+++|+.|++++|.++.++.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 9999887 4545567788899999999988877654
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.48 E-value=6e-13 Score=90.41 Aligned_cols=104 Identities=28% Similarity=0.263 Sum_probs=77.0
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
+++++|++++|. +.+ +++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+. ..|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~--i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNS--ISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSC--CCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCcCEEECCCCC--ccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 567888888887 663 3435677888888888888888773 35777888888888888877 44444 6788888
Q ss_pred EeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCC
Q 048165 83 LDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 83 l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
|++++|. .+. +..+..+++|++|++++|.+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 8888887 332 3577788888888888887765
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=2.3e-13 Score=92.78 Aligned_cols=102 Identities=26% Similarity=0.339 Sum_probs=86.5
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccc-hhcccCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGS-LEGLANLTNL 80 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L 80 (124)
..+++|+.|++++|. +. .+| ..+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+.. |..++.+++|
T Consensus 460 ~~l~~L~~L~Ls~N~--l~-~lp-~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 460 EQLLLVTHLDLSHNR--LR-ALP-PALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGTTCCEEECCSSC--CC-CCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cccccCcEeecCccc--cc-ccc-hhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 457899999999998 77 677 578999999999999999999888999999999999999999766 8899999999
Q ss_pred CEEeccCCc--cCCh---hhhcCCCCCCEEee
Q 048165 81 QVLDLSGNQ--NLTT---LGLANLPNLKTLDL 107 (124)
Q Consensus 81 ~~l~l~~~~--~~~~---~~~~~~~~L~~l~l 107 (124)
+.|++++|. .+.+ .....+++|+.|++
T Consensus 536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999997 2211 22345788888864
No 106
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=1.5e-12 Score=76.45 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=85.5
Q ss_pred CcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165 7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD 84 (124)
Q Consensus 7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 84 (124)
.+.++.+++. +. .++. . ..++++.|++++|.++..+ .+..+++|+++++++|.+.+..+..+..+++|+.++
T Consensus 9 ~~~l~~~~~~--l~-~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKG--LT-SVPT-G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSC--CS-SCCT-T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCC--Cc-cCCC-C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 5678888887 65 4452 2 2468999999999998843 467899999999999999966666678999999999
Q ss_pred ccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165 85 LSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117 (124)
Q Consensus 85 l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (124)
+++|. .+.+..+..+++|+.|++++|.++.++.
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 99998 5545567889999999999999988774
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.48 E-value=5.2e-13 Score=85.02 Aligned_cols=107 Identities=25% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+++|+.|++++|. +.+..+......+++|+.|++++|.++..+....+++|+++++++|.+.+. +..+..+++|+.
T Consensus 142 ~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~ 218 (317)
T 3o53_A 142 CRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW 218 (317)
T ss_dssp GGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE
T ss_pred ccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc-hhhhcccCcccE
Confidence 45677888888887 653333222245777888888888877765555577888888888887743 444667778888
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~ 113 (124)
+++++|. .+ +..+..+++|+.+++++|++.
T Consensus 219 L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 219 ISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECTTSCCCEE-CTTCCCCTTCCEEECTTCCCB
T ss_pred EECcCCcccch-hhHhhcCCCCCEEEccCCCcc
Confidence 8888876 44 455667778888888888776
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=2.1e-13 Score=80.06 Aligned_cols=103 Identities=26% Similarity=0.321 Sum_probs=86.3
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-h-hccCCCCCEEEccCccccccchh--cccCCCCC
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-G-LAKLKNLEALDLSSNYYLHGSLE--GLANLTNL 80 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~-~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L 80 (124)
++|+.|++++|. +.+ + ..+..+++|+.|++++|.++..+ . +..+++|+++++++|.+. ..|. .+..+++|
T Consensus 42 ~~L~~L~Ls~N~--l~~-~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 42 DQFDAIDFSDNE--IRK-L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSL 115 (176)
T ss_dssp TCCSEEECCSSC--CCE-E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTC
T ss_pred CCCCEEECCCCC--CCc-c--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCC
Confidence 489999999998 763 3 36788999999999999999853 3 488999999999999997 4454 78889999
Q ss_pred CEEeccCCc--cCChh----hhcCCCCCCEEeeeccCCCC
Q 048165 81 QVLDLSGNQ--NLTTL----GLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~----~~~~~~~L~~l~l~~n~~~~ 114 (124)
+.+++++|. .+ +. .+..+++|+.++++.|...+
T Consensus 116 ~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 116 TYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998 44 44 37889999999999988654
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=86.87 Aligned_cols=109 Identities=18% Similarity=0.133 Sum_probs=63.0
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---h---hhhccCCCCCEEEccCccccccchh----c
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---I---QGLAKLKNLEALDLSSNYYLHGSLE----G 73 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~---~~~~~~~~L~~l~l~~~~~~~~~~~----~ 73 (124)
+++|++|++++|. +.+..+ ..+..+++|++|++++|++.. . ..+..+++|++|++++|.++. .+. .
T Consensus 144 ~~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 144 KPGLKVLSIAQAH--SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp CSCCCEEEEECCS--SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred ccCCCEEEeeCCC--cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 5566666666666 543222 455666667777777776543 1 112456667777777776652 122 1
Q ss_pred ccCCCCCCEEeccCCc--cCChhhhcCC---CCCCEEeeeccCCCCcc
Q 048165 74 LANLTNLQVLDLSGNQ--NLTTLGLANL---PNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 74 ~~~~~~L~~l~l~~~~--~~~~~~~~~~---~~L~~l~l~~n~~~~~~ 116 (124)
+..+++|++|++++|. ...|..+..+ ++|++|++++|.++.++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 3455677777777776 2213344444 57777777777777655
No 110
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.46 E-value=4.9e-13 Score=92.17 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCcCcEEeccccccccCCcccccccccc-------cCccEEeccCCCCcch-hhhc--cCCCCCEEEccCccccccchhc
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANL-------TNLKKLDLDGCGITTI-QGLA--KLKNLEALDLSSNYYLHGSLEG 73 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-------~~l~~L~l~~~~l~~~-~~~~--~~~~L~~l~l~~~~~~~~~~~~ 73 (124)
+++|+.|++++|. +. .++...+... ++|+.|++++|.++.. ..+. .+++|+.|++++|.+.+ .|..
T Consensus 456 l~~L~~L~Ls~N~--l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 531 (636)
T 4eco_A 456 GSPLSSINLMGNM--LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531 (636)
T ss_dssp TCCCSEEECCSSC--CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred CCCCCEEECCCCC--CC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence 4555566666655 44 3342222222 2566666666666653 2343 56666666666666664 5555
Q ss_pred ccCCCCCCEEeccC------Cc---cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 74 LANLTNLQVLDLSG------NQ---NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 74 ~~~~~~L~~l~l~~------~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+..+++|+.|++++ |. .+ +..+..+++|+.|++++|.+..+|
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~ip 582 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDIRKVN 582 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCC-CTTGGGCSSCCEEECCSSCCCBCC
T ss_pred hhcCCCCCEEECCCCcccccCcccccC-hHHHhcCCCCCEEECCCCcCCccC
Confidence 66666666666633 22 22 445566666666666666665554
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=2.4e-13 Score=96.41 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=85.6
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc--h-hhhcc-------CCCCCEEEccCccccccch
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT--I-QGLAK-------LKNLEALDLSSNYYLHGSL 71 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~--~-~~~~~-------~~~L~~l~l~~~~~~~~~~ 71 (124)
++++|+.|++++|. +.+.+| ..+..+++|+.|++++|+ +++ . ..+.. +++|+.|++++|.+. ..|
T Consensus 489 ~L~~L~~L~Ls~N~--l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCP--NMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GCTTCCEEEEESCT--TCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred cCCCCCEEECcCCC--CCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 78899999999998 776777 678899999999999997 775 2 23443 448999999999888 667
Q ss_pred h--cccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 72 E--GLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 72 ~--~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
. .++.+++|+.|++++|. .+ + .+..+++|+.|++++|.+..++
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~L~~L~~L~Ls~N~l~~lp 611 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVRHL-E-AFGTNVKLTDLKLDYNQIEEIP 611 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCCBC-C-CCCTTSEESEEECCSSCCSCCC
T ss_pred ChhhhhcCCCCCEEECCCCCcccc-h-hhcCCCcceEEECcCCccccch
Confidence 7 78888888888888887 34 3 6677778888888888777665
No 112
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=2.4e-12 Score=85.76 Aligned_cols=85 Identities=26% Similarity=0.271 Sum_probs=40.8
Q ss_pred cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107 (124)
Q Consensus 28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l 107 (124)
+..+++|++|++++|.++..+ +..+++|+++++++|.+.+. .++.+++|+.+++++|..+....+..+++|+.|++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 344455555555555544432 44455555555555555432 13444455555555553111113444555566666
Q ss_pred eccCCCCcc
Q 048165 108 RDCGITTIQ 116 (124)
Q Consensus 108 ~~n~~~~~~ 116 (124)
++|.++.++
T Consensus 178 s~n~l~~l~ 186 (457)
T 3bz5_A 178 SFNKITELD 186 (457)
T ss_dssp CSSCCCCCC
T ss_pred CCCccceec
Confidence 655555543
No 113
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.42 E-value=1.4e-12 Score=83.42 Aligned_cols=105 Identities=24% Similarity=0.229 Sum_probs=85.1
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++|++|++++|. +.+..+ ..+..+++|+.|++++|.++.. ..+..+++|+.+++++|.+. ..|..+..+++|+.
T Consensus 193 ~~L~~L~l~~n~--i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 193 ETLNELHLDHNK--IQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp SSCSCCBCCSSC--CCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred CCCCEEECCCCc--CCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 578999999998 764433 6788899999999999999884 36888999999999999998 66777889999999
Q ss_pred EeccCCc--cCChhhhcC------CCCCCEEeeeccCCC
Q 048165 83 LDLSGNQ--NLTTLGLAN------LPNLKTLDLRDCGIT 113 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~------~~~L~~l~l~~n~~~ 113 (124)
+++++|. .+....+.. ...++.+++++|++.
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999997 443333332 356889999999887
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=2.2e-13 Score=87.05 Aligned_cols=60 Identities=30% Similarity=0.496 Sum_probs=23.7
Q ss_pred ccccCccEEeccCC-CCcc--h-hhhccCCCCCEEEccCc-ccccc-chhcccCCC-CCCEEeccCC
Q 048165 29 ANLTNLKKLDLDGC-GITT--I-QGLAKLKNLEALDLSSN-YYLHG-SLEGLANLT-NLQVLDLSGN 88 (124)
Q Consensus 29 ~~~~~l~~L~l~~~-~l~~--~-~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~ 88 (124)
..+++|+.|++++| .++. . ..+..+++|++|++++| .+.+. .+..+..++ +|++|++++|
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 33444444444444 3332 1 12333444444444444 33321 122233344 4444444444
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.39 E-value=1.7e-12 Score=86.43 Aligned_cols=103 Identities=30% Similarity=0.318 Sum_probs=71.4
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
.+++|++|++++|. +.+ ++ .+..+++|+.|++++|.++..+ +..+++|+++++++|.+.+. + ++.+++|++
T Consensus 40 ~l~~L~~L~Ls~n~--l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSS--ITD-MT--GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSC--CCC-CT--TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred HcCCCCEEEccCCC--ccc-Ch--hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 35678888888887 653 34 4667788888888888777754 66777788888888877743 2 667777777
Q ss_pred EeccCCccCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 83 LDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
|++++|... ...+..+++|+.|++++|.++.+
T Consensus 111 L~L~~N~l~-~l~~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 111 LNCDTNKLT-KLDVSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp EECCSSCCS-CCCCTTCTTCCEEECTTSCCSCC
T ss_pred EECCCCcCC-eecCCCCCcCCEEECCCCcccee
Confidence 777777611 11256677777777777777665
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=2.1e-12 Score=90.30 Aligned_cols=95 Identities=28% Similarity=0.242 Sum_probs=80.3
Q ss_pred cccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCC
Q 048165 26 LGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNL 102 (124)
Q Consensus 26 ~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L 102 (124)
..+..++.|+.|++++|.+..+ ..+..+++|++|++++|.+. ..|..++.+++|+.|++++|. .+ |..+..+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCC
Confidence 5677889999999999999885 56778999999999999999 778889999999999999998 56 7788999999
Q ss_pred CEEeeeccCCCCccc-ccccc
Q 048165 103 KTLDLRDCGITTIQG-IQQFT 122 (124)
Q Consensus 103 ~~l~l~~n~~~~~~~-~~~l~ 122 (124)
+.|++++|.+..+|. +..+.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLC 316 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCT
T ss_pred CEEECCCCCCCccChhhhcCC
Confidence 999999999998874 44443
No 117
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=6.2e-12 Score=73.79 Aligned_cols=82 Identities=27% Similarity=0.222 Sum_probs=70.9
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++++.|++++|. +.+..+ ..+..+++|+.|++++|+++..+ .+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 33 ~~L~~L~Ls~N~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQ--ITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCC--ccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 678999999999 774434 67889999999999999999953 3678999999999999999665556889999999
Q ss_pred EeccCCc
Q 048165 83 LDLSGNQ 89 (124)
Q Consensus 83 l~l~~~~ 89 (124)
+++++|.
T Consensus 110 L~L~~N~ 116 (174)
T 2r9u_A 110 IYLYNNP 116 (174)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9999997
No 118
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=7.8e-12 Score=73.09 Aligned_cols=83 Identities=29% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.++++.|++++|. +.+..+ ..+..+++|+.|++++|+++..+ .+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 29 ~~~l~~L~L~~N~--i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 29 PTTTQVLYLYDNQ--ITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp CTTCSEEECCSSC--CCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCc--CCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 3678999999999 774434 67889999999999999999953 467899999999999999976666788999999
Q ss_pred EEeccCCc
Q 048165 82 VLDLSGNQ 89 (124)
Q Consensus 82 ~l~l~~~~ 89 (124)
++++++|.
T Consensus 106 ~L~L~~N~ 113 (170)
T 3g39_A 106 HIWLLNNP 113 (170)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 99999996
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=1.4e-12 Score=83.37 Aligned_cols=106 Identities=26% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCCcCcEEeccccccccCCc-ccccccccccCccEEeccCC-CCcc---hhhhccCC-CCCEEEccCcc--cc-ccchhc
Q 048165 3 NLRYLQVLDLSANYNITSGS-LTRLGLANLTNLKKLDLDGC-GITT---IQGLAKLK-NLEALDLSSNY--YL-HGSLEG 73 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~-~~~~~~~~~~~l~~L~l~~~-~l~~---~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~ 73 (124)
.+++|++|++++|.. +.+. ++ ..+..+++|+.|++++| .++. ...+..++ +|++|++++|. ++ ...+..
T Consensus 140 ~~~~L~~L~L~~~~~-l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 140 KNSNLVRLNLSGCSG-FSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp TCTTCSEEECTTCBS-CCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred cCCCCCEEECCCCCC-CCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 355556666655521 2211 22 23344555555555555 4443 12334444 55555555542 22 122233
Q ss_pred ccCCCCCCEEeccCCccC---ChhhhcCCCCCCEEeeecc
Q 048165 74 LANLTNLQVLDLSGNQNL---TTLGLANLPNLKTLDLRDC 110 (124)
Q Consensus 74 ~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~l~l~~n 110 (124)
+..+++|++|++++|..+ .+..+..+++|+.|++++|
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 334444444444444311 1223334444444444444
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=8.4e-15 Score=87.59 Aligned_cols=106 Identities=31% Similarity=0.294 Sum_probs=79.8
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.+++|++|++++|. +.+ ++ .+..+++|+.|++++|.++..+ .+..+++|+++++++|.+.+ .| .+..+++|+
T Consensus 46 ~l~~L~~L~ls~n~--l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 46 TLKACKHLALSTNN--IEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HTTTCSEEECSEEE--ESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred cCCCCCEEECCCCC--Ccc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 46788888888887 663 45 5677888888888888888753 44556788888998888874 33 566778889
Q ss_pred EEeccCCc--cCCh-hhhcCCCCCCEEeeeccCCCCc
Q 048165 82 VLDLSGNQ--NLTT-LGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 82 ~l~l~~~~--~~~~-~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
++++++|. .+.. ..+..+++|+.+++++|++.+.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 99998886 2211 3577888999999999888665
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=1.4e-14 Score=86.55 Aligned_cols=82 Identities=29% Similarity=0.323 Sum_probs=45.1
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccch-hcccCCCCCCE
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSL-EGLANLTNLQV 82 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~ 82 (124)
+++|+.|++++|. +. .++ ..+..+++|+.|++++|.++.++.+..+++|+.+++++|.+.+..+ ..+..+++|++
T Consensus 69 l~~L~~L~l~~n~--l~-~l~-~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 69 MENLRILSLGRNL--IK-KIE-NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HTTCCEEEEEEEE--EC-SCS-SHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred CCCCCEEECCCCC--cc-ccc-chhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 4556666666665 44 334 3334455666666666666655555555666666666666553221 34555566666
Q ss_pred EeccCCc
Q 048165 83 LDLSGNQ 89 (124)
Q Consensus 83 l~l~~~~ 89 (124)
+++++|.
T Consensus 145 L~l~~N~ 151 (198)
T 1ds9_A 145 LLLAGNP 151 (198)
T ss_dssp EEECSCH
T ss_pred EEecCCc
Confidence 6666654
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.24 E-value=1.2e-10 Score=77.51 Aligned_cols=55 Identities=27% Similarity=0.320 Sum_probs=25.7
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCcccc
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYL 67 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~ 67 (124)
+|++|++++|. +.+ ++ .+..+++|++|++++|.++..+.. .++|+++++++|.+.
T Consensus 132 ~L~~L~L~~n~--l~~-lp--~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 132 LLEYLGVSNNQ--LEK-LP--ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLE 186 (454)
T ss_dssp TCCEEECCSSC--CSS-CC--CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred CCCEEECcCCC--CCC-Cc--ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCC
Confidence 45555555555 442 33 245555555555555555442211 124444444444444
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=6.5e-12 Score=81.79 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=7.8
Q ss_pred ccccCccEEeccCCCCc
Q 048165 29 ANLTNLKKLDLDGCGIT 45 (124)
Q Consensus 29 ~~~~~l~~L~l~~~~l~ 45 (124)
..+++|+.|++++|.++
T Consensus 119 ~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHCTTCCEEECCSSCCH
T ss_pred HhCCCCCEEECcCCCCC
Confidence 34444444444444443
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=7.5e-12 Score=80.98 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=5.9
Q ss_pred cCccEEeccCCCCc
Q 048165 32 TNLKKLDLDGCGIT 45 (124)
Q Consensus 32 ~~l~~L~l~~~~l~ 45 (124)
++|++|++++|.++
T Consensus 80 ~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 80 ANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECCSSCGG
T ss_pred CCccEEECcCCcCC
Confidence 34444444444433
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.21 E-value=2.1e-11 Score=79.38 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=27.6
Q ss_pred cccCccEEeccCCCCcc------hh-hhccCCCCCEEEccCcccc----ccchhcccCCCCCCEEeccCCc
Q 048165 30 NLTNLKKLDLDGCGITT------IQ-GLAKLKNLEALDLSSNYYL----HGSLEGLANLTNLQVLDLSGNQ 89 (124)
Q Consensus 30 ~~~~l~~L~l~~~~l~~------~~-~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~ 89 (124)
.+++|+.|++++|.++. .+ .+..+++|+.|++++|.+. ...|..+..+++|++|++++|.
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 44455555555555442 12 3344455555555555443 2233344444455555555443
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=1.5e-10 Score=79.08 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=14.9
Q ss_pred CccEEeccCCCCcchhhhccCCCCCEEEccCcccc
Q 048165 33 NLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYL 67 (124)
Q Consensus 33 ~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~ 67 (124)
+|+.|++++|.++..+. .+++|+.|++++|.+.
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLT 153 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccC
Confidence 44444444444444322 3344444444444444
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=6.9e-11 Score=80.70 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=39.6
Q ss_pred ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCC-------CEEeccCCc--cCChhhhcCCCC
Q 048165 31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL-------QVLDLSGNQ--NLTTLGLANLPN 101 (124)
Q Consensus 31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~~~--~~~~~~~~~~~~ 101 (124)
+++|+.|++++|.++..+.+. ++|+.|++++|.+. ..|. +.. +| +.|++++|. .+ |..+..+++
T Consensus 159 l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~ 231 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDP 231 (571)
T ss_dssp CTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCC-CGGGGGSCT
T ss_pred CCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCC
Confidence 445555555555555533322 45566666665555 3333 322 44 666666665 44 444455666
Q ss_pred CCEEeeeccCCCC
Q 048165 102 LKTLDLRDCGITT 114 (124)
Q Consensus 102 L~~l~l~~n~~~~ 114 (124)
|+.|++++|++++
T Consensus 232 L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 232 TCTIILEDNPLSS 244 (571)
T ss_dssp TEEEECCSSSCCH
T ss_pred CCEEEeeCCcCCC
Confidence 6666666666653
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=1.1e-10 Score=75.04 Aligned_cols=84 Identities=26% Similarity=0.263 Sum_probs=69.0
Q ss_pred CCCCcCcEEeccc-cccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 2 ANLRYLQVLDLSA-NYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 2 ~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
..+++|+.|++++ |. +. .++...+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+.
T Consensus 28 ~~~~~L~~L~l~~~n~--l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 28 PGAENLTELYIENQQH--LQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104 (347)
T ss_dssp CSCSCCSEEECCSCSS--CC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred CCCCCeeEEEccCCCC--CC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence 4567899999996 88 76 44546789999999999999999994 3678999999999999999955444454444
Q ss_pred CCCEEeccCCc
Q 048165 79 NLQVLDLSGNQ 89 (124)
Q Consensus 79 ~L~~l~l~~~~ 89 (124)
|+.|++.+|.
T Consensus 105 -L~~l~l~~N~ 114 (347)
T 2ifg_A 105 -LQELVLSGNP 114 (347)
T ss_dssp -CCEEECCSSC
T ss_pred -ceEEEeeCCC
Confidence 9999999886
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.21 E-value=1.7e-11 Score=79.34 Aligned_cols=108 Identities=25% Similarity=0.360 Sum_probs=76.7
Q ss_pred CCcCcEEeccccccccCCcccc----ccccccc-CccEEeccCCCCcc--hhhhccC-----CCCCEEEccCccccccch
Q 048165 4 LRYLQVLDLSANYNITSGSLTR----LGLANLT-NLKKLDLDGCGITT--IQGLAKL-----KNLEALDLSSNYYLHGSL 71 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~----~~~~~~~-~l~~L~l~~~~l~~--~~~~~~~-----~~L~~l~l~~~~~~~~~~ 71 (124)
..+|++|++++|. +.+ .+. ..+..++ +|+.|++++|.++. +..+..+ ++|++|++++|.+.+..+
T Consensus 21 ~~~L~~L~Ls~n~--l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNN--LYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSC--GGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCC--CCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 4459999999998 653 332 3456777 89999999999987 3344443 889999999999886666
Q ss_pred hccc----CC-CCCCEEeccCCc--cCChhh----hcC-CCCCCEEeeeccCCCC
Q 048165 72 EGLA----NL-TNLQVLDLSGNQ--NLTTLG----LAN-LPNLKTLDLRDCGITT 114 (124)
Q Consensus 72 ~~~~----~~-~~L~~l~l~~~~--~~~~~~----~~~-~~~L~~l~l~~n~~~~ 114 (124)
..+. .+ ++|++|++++|. ...... +.. +.+|++|++++|.+.+
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 5433 44 788999998887 222222 333 3578888888887763
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.18 E-value=6.9e-11 Score=76.20 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=53.6
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-h--hhhccCCCCCE-EEccCccccccchhcccCCCCC
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-I--QGLAKLKNLEA-LDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~--~~~~~~~~L~~-l~l~~~~~~~~~~~~~~~~~~L 80 (124)
+++++|++++|. +. .+++..|.++++|++|++++|.+.. + ..+..++++++ +.+..|.+....+..+..+++|
T Consensus 30 ~~l~~L~Ls~N~--i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 457778888887 65 5564567778888888888887644 2 24556666554 3445566665555666677777
Q ss_pred CEEeccCCc
Q 048165 81 QVLDLSGNQ 89 (124)
Q Consensus 81 ~~l~l~~~~ 89 (124)
+++++++|.
T Consensus 107 ~~L~l~~n~ 115 (350)
T 4ay9_X 107 QYLLISNTG 115 (350)
T ss_dssp CEEEEEEEC
T ss_pred ccccccccc
Confidence 777766654
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.18 E-value=3.2e-10 Score=78.18 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=46.2
Q ss_pred cCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeec
Q 048165 32 TNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRD 109 (124)
Q Consensus 32 ~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~ 109 (124)
++|+.|++++|.++..+ ..+++|+.|++++|.+. ..|. .+++|+.|++++|. .+ |..+..+++|+.|++++
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecC
Confidence 44555555555555533 33456666666666665 3333 44567777777776 44 55667777777777777
Q ss_pred cCCCC
Q 048165 110 CGITT 114 (124)
Q Consensus 110 n~~~~ 114 (124)
|++++
T Consensus 294 N~l~~ 298 (622)
T 3g06_A 294 NPLSE 298 (622)
T ss_dssp CCCCH
T ss_pred CCCCC
Confidence 77764
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.17 E-value=3.8e-10 Score=75.15 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 82 (124)
++++|++|++++|. +. .++ .. ..+|++|++++|.++..+.+..+++|+++++++|.+.+ .|.. ..+|++
T Consensus 151 ~l~~L~~L~l~~N~--l~-~lp-~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 151 NSSFLKIIDVDNNS--LK-KLP-DL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp TCTTCCEEECCSSC--CS-CCC-CC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred CCCCCCEEECCCCc--Cc-ccC-CC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence 44455555555554 33 122 11 23455555555555544444455555555555554442 1211 134555
Q ss_pred EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165 83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116 (124)
Q Consensus 83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (124)
+++++|. .+ + .+..+++|+.+++++|.++.++
T Consensus 220 L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 220 IVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp EECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC
T ss_pred EECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCccc
Confidence 5555554 22 2 2445555555555555555443
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=1.5e-11 Score=81.45 Aligned_cols=13 Identities=46% Similarity=0.629 Sum_probs=5.0
Q ss_pred CCCCCEEEccCcc
Q 048165 53 LKNLEALDLSSNY 65 (124)
Q Consensus 53 ~~~L~~l~l~~~~ 65 (124)
+++|++|++++|.
T Consensus 112 ~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 112 LPTLQELHLSDNL 124 (461)
T ss_dssp CTTCCEEECCSSB
T ss_pred CCceeEEECCCCc
Confidence 3333333333333
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=1e-11 Score=82.27 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=35.0
Q ss_pred cCCCCCEEEccCccccccchhcccC-----CCCCCEEeccCCccC------ChhhhcCCCCCCEEeeeccCCCC
Q 048165 52 KLKNLEALDLSSNYYLHGSLEGLAN-----LTNLQVLDLSGNQNL------TTLGLANLPNLKTLDLRDCGITT 114 (124)
Q Consensus 52 ~~~~L~~l~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~------~~~~~~~~~~L~~l~l~~n~~~~ 114 (124)
.+++|+++++++|.+.+..+..+.. .++|+++++++|... -+..+..+++|+.+++++|.+.+
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 4456666666666655443333321 456666666666411 03344556677777777776654
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.10 E-value=4.2e-10 Score=72.53 Aligned_cols=86 Identities=24% Similarity=0.331 Sum_probs=43.2
Q ss_pred cCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccch-hcccCCCCCCEE-eccCCc--cCChhhhcCCCCCCEE
Q 048165 32 TNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSL-EGLANLTNLQVL-DLSGNQ--NLTTLGLANLPNLKTL 105 (124)
Q Consensus 32 ~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l-~l~~~~--~~~~~~~~~~~~L~~l 105 (124)
++++.|++++|+++.++ .+..+++|++|++++|.+.+..+ ..+..++++..+ .+..|. .+.+..+..+++|+.+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 34555666666655532 34555566666666665543322 334455554432 233333 3334445555566666
Q ss_pred eeeccCCCCccc
Q 048165 106 DLRDCGITTIQG 117 (124)
Q Consensus 106 ~l~~n~~~~~~~ 117 (124)
++++|.+..++.
T Consensus 110 ~l~~n~l~~~~~ 121 (350)
T 4ay9_X 110 LISNTGIKHLPD 121 (350)
T ss_dssp EEEEECCSSCCC
T ss_pred cccccccccCCc
Confidence 666665555443
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=5.7e-11 Score=77.32 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=18.2
Q ss_pred CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc
Q 048165 5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT 46 (124)
Q Consensus 5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 46 (124)
++|++|++++|. +...-.......+++++.|++++|.++.
T Consensus 101 ~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 101 HALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp SCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred CCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 456666666665 4321111112234445555555555544
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=76.07 Aligned_cols=109 Identities=19% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCcCcEEeccccccccCCccccccc-----ccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccc--
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGL-----ANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGS-- 70 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~-----~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~-- 70 (124)
+++++.|++++|. +...-. ..+ ...++|+.|++++|.++.. ..+...++|++|++++|.+.+..
T Consensus 125 L~~L~~L~Ls~n~--l~~~~~-~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~ 201 (372)
T 3un9_A 125 FLRARKLGLQLNS--LGPEAC-KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE 201 (372)
T ss_dssp HHTEEEEECCSSC--CCHHHH-HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred HHhccHhhcCCCC--CCHHHH-HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence 3467888888887 542211 222 2457788888888888661 23456778888888888877543
Q ss_pred --hhcccCCCCCCEEeccCCccC--C----hhhhcCCCCCCEEeeeccCCCCc
Q 048165 71 --LEGLANLTNLQVLDLSGNQNL--T----TLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 71 --~~~~~~~~~L~~l~l~~~~~~--~----~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
...+...++|+.|++++|... . ...+...++|+.|++++|.+.+.
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 344556678888888888611 0 22344567888888888887643
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.8e-09 Score=68.99 Aligned_cols=85 Identities=25% Similarity=0.229 Sum_probs=56.9
Q ss_pred ccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC-EEeccCCc-cCChhhhcCCCCCCEEe
Q 048165 31 LTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ-VLDLSGNQ-NLTTLGLANLPNLKTLD 106 (124)
Q Consensus 31 ~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~-~~~~~~~~~~~~L~~l~ 106 (124)
+++|+.+++++|.++.. ..+..+.+|+.+++.+| +......+|..|.+|+ .+.+..+- .+....+..|++|+.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence 55666677776666663 25666777777777766 5545556677777777 77776633 55566777778888888
Q ss_pred eeccCCCCcc
Q 048165 107 LRDCGITTIQ 116 (124)
Q Consensus 107 l~~n~~~~~~ 116 (124)
+.+|.+..++
T Consensus 304 l~~n~i~~I~ 313 (329)
T 3sb4_A 304 ATGDKITTLG 313 (329)
T ss_dssp ECSSCCCEEC
T ss_pred eCCCccCccc
Confidence 7777776654
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.05 E-value=1.7e-09 Score=74.62 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=26.2
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCcccc
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYL 67 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~ 67 (124)
+|+.|++++|. +. .++. .+++|++|++++|.++..+. .+++|++|++++|.+.
T Consensus 62 ~L~~L~L~~N~--l~-~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 62 HITTLVIPDNN--LT-SLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TCSEEEECSCC--CS-CCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCC--CC-CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC
Confidence 45555555554 43 3331 34555555555555554332 3445555555555444
No 140
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.03 E-value=3.1e-10 Score=67.14 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=81.4
Q ss_pred CCCCcCcEEecccc-ccccCCc----ccccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccc
Q 048165 2 ANLRYLQVLDLSAN-YNITSGS----LTRLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGS 70 (124)
Q Consensus 2 ~~~~~l~~l~l~~~-~~~~~~~----~~~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~ 70 (124)
...+.|++|++++| . +... +. ..+...+++++|++++|.+... ..+...+.|++|++++|.+.+..
T Consensus 33 ~~~~~L~~L~L~~n~~--i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMN--IPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTT--CCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred hcCCCCCEEEecCCCC--CCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 45788999999999 6 5421 12 3455678899999999999872 24556788999999999998543
Q ss_pred ----hhcccCCCCCCEEec--cCCc-------cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165 71 ----LEGLANLTNLQVLDL--SGNQ-------NLTTLGLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 71 ----~~~~~~~~~L~~l~l--~~~~-------~~~~~~~~~~~~L~~l~l~~n~~~~~ 115 (124)
...+...+.|++|++ ++|. .+ ...+...+.|+.|++++|.+...
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l-~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI-ANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH-HHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH-HHHHHhCCCcCEEeccCCCCChH
Confidence 345567789999999 7775 12 23455678999999999987543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1.7e-09 Score=69.17 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=84.2
Q ss_pred CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCC-EEEccCccccccchhcccCCCCC
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLE-ALDLSSNYYLHGSLEGLANLTNL 80 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L 80 (124)
|++|+.++++.|. +. .+++..|.+|.+|+.+++..+ ++.. ..+..+.+|+ .+++.+ .+....+.+|..|.+|
T Consensus 225 ~~~L~~l~L~~n~--i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTN--AT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBC--CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCC--cc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 7899999999987 66 677788999999999999998 6664 4788999999 999988 6665667889999999
Q ss_pred CEEeccCCc--cCChhhhcCCCCCCEEee
Q 048165 81 QVLDLSGNQ--NLTTLGLANLPNLKTLDL 107 (124)
Q Consensus 81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l 107 (124)
+.+++..+. .+....+..|++|+.+..
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999997776 676778899999998763
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.91 E-value=1.6e-09 Score=63.53 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=51.3
Q ss_pred CccEEeccCCCCcc--hhhhccCCCCCEEEccCcc-ccccchhcccCC----CCCCEEeccCCccCChh---hhcCCCCC
Q 048165 33 NLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNY-YLHGSLEGLANL----TNLQVLDLSGNQNLTTL---GLANLPNL 102 (124)
Q Consensus 33 ~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~~~~~~---~~~~~~~L 102 (124)
.|+.||+++|.++. ...+..+++|+.|++++|. +++.....+... ++|++|++++|..++.. .+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47777777777666 3456677777777777774 665555555543 36777777777644333 34466777
Q ss_pred CEEeeeccC
Q 048165 103 KTLDLRDCG 111 (124)
Q Consensus 103 ~~l~l~~n~ 111 (124)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777765
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.85 E-value=3.4e-09 Score=72.23 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred cccccCccEEeccCCC--Ccc--hhhhc-cCCCCCEEEccCccccccc-hhcccCCCCCCEEeccCCccCC----hhhhc
Q 048165 28 LANLTNLKKLDLDGCG--ITT--IQGLA-KLKNLEALDLSSNYYLHGS-LEGLANLTNLQVLDLSGNQNLT----TLGLA 97 (124)
Q Consensus 28 ~~~~~~l~~L~l~~~~--l~~--~~~~~-~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~----~~~~~ 97 (124)
+..+++|+.|+++.|. ++. +..+. .+++|++|++++|.+++.. +..+..+++|+.|++++|. ++ +....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 510 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVT 510 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence 4557788888886543 444 22333 4788999999998887533 3445678899999999996 22 23345
Q ss_pred CCCCCCEEeeeccCCCCc
Q 048165 98 NLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 98 ~~~~L~~l~l~~n~~~~~ 115 (124)
.+++|+.|++++|.++..
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 788999999999997654
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.81 E-value=5.8e-09 Score=61.12 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=66.7
Q ss_pred cCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc--hhhhccC----CCCCEEEccCcc-ccccchhcccCC
Q 048165 6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT--IQGLAKL----KNLEALDLSSNY-YLHGSLEGLANL 77 (124)
Q Consensus 6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~--~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~ 77 (124)
+|++|++++|. ++.. .-..+.+|++|+.|++++|. +++ ...+..+ ++|++|++++|. +++.....+..+
T Consensus 62 ~L~~LDLs~~~--Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC--IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCC--CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCC--ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 58999999998 6533 22456789999999999995 777 3455553 479999999985 887777778899
Q ss_pred CCCCEEeccCCccCC
Q 048165 78 TNLQVLDLSGNQNLT 92 (124)
Q Consensus 78 ~~L~~l~l~~~~~~~ 92 (124)
++|++|++++|..++
T Consensus 139 ~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCCEEEEESCTTCC
T ss_pred CCCCEEECCCCCCCC
Confidence 999999999998443
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.77 E-value=1.3e-08 Score=63.38 Aligned_cols=77 Identities=29% Similarity=0.382 Sum_probs=55.8
Q ss_pred ccccCccEEeccCCCCcchh----hhccCCCCCEEEccCcccccc-chhcccCCCCCCEEeccCCc---cCC------hh
Q 048165 29 ANLTNLKKLDLDGCGITTIQ----GLAKLKNLEALDLSSNYYLHG-SLEGLANLTNLQVLDLSGNQ---NLT------TL 94 (124)
Q Consensus 29 ~~~~~l~~L~l~~~~l~~~~----~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~---~~~------~~ 94 (124)
..+++|+.|++++|.++.+. .+..+++|+.|++++|.+.+. ....+..+ +|+.|++.+|. .+. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 45788999999999998843 344789999999999998854 12333344 89999999886 121 12
Q ss_pred hhcCCCCCCEEe
Q 048165 95 GLANLPNLKTLD 106 (124)
Q Consensus 95 ~~~~~~~L~~l~ 106 (124)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 466788898887
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.75 E-value=9.8e-09 Score=69.97 Aligned_cols=104 Identities=27% Similarity=0.341 Sum_probs=59.7
Q ss_pred CCcCcEEeccccccccCCcccccccc-cccCccEEeccCC-CCcc--hhh-hccCCCCCEEEccCccccccchhccc---
Q 048165 4 LRYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGC-GITT--IQG-LAKLKNLEALDLSSNYYLHGSLEGLA--- 75 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~-~l~~--~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~--- 75 (124)
+++|++|++++|. +.+... ..+. .+++|+.|++++| .++. .+. ...+++|++|++++|.+.+..+..+.
T Consensus 104 ~~~L~~L~L~~~~--~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 104 YTWLEEIRLKRMV--VTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp CTTCCEEEEESCB--CCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCCeEEeeCcE--EcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4566666666665 443322 2222 4667777777776 4443 222 33577777777777776644433332
Q ss_pred -CCCCCCEEeccCCc-cCChhh----hcCCCCCCEEeeecc
Q 048165 76 -NLTNLQVLDLSGNQ-NLTTLG----LANLPNLKTLDLRDC 110 (124)
Q Consensus 76 -~~~~L~~l~l~~~~-~~~~~~----~~~~~~L~~l~l~~n 110 (124)
.+++|+.|++.+|. .++... ...+++|+.|++++|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55677777777764 232222 234577777777766
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.69 E-value=4.9e-08 Score=66.58 Aligned_cols=79 Identities=14% Similarity=0.054 Sum_probs=48.9
Q ss_pred CCCcCcEEeccccccccCCc----ccccccccccCccEEeccCCCCcc-----h-hhhccCCCCCEEEccCccccccchh
Q 048165 3 NLRYLQVLDLSANYNITSGS----LTRLGLANLTNLKKLDLDGCGITT-----I-QGLAKLKNLEALDLSSNYYLHGSLE 72 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~----~~~~~~~~~~~l~~L~l~~~~l~~-----~-~~~~~~~~L~~l~l~~~~~~~~~~~ 72 (124)
+|++|++|++++|. +.+. ++ .....+++|+.|++++|.++. . ..+..+++|++|++++|.+.+ .+.
T Consensus 162 ~~~~L~~L~L~~~~--~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~ 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESS--FSEKDGKWLH-ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG 237 (592)
T ss_dssp HCTTCSEEECTTCE--EECCCSHHHH-HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH
T ss_pred hCCCCCEEECcccc--ccCcchhHHH-HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH
Confidence 47888999998887 5422 22 234567888888888887762 1 234567888888888876653 233
Q ss_pred cccCCCCCCEEec
Q 048165 73 GLANLTNLQVLDL 85 (124)
Q Consensus 73 ~~~~~~~L~~l~l 85 (124)
.+..+++|+.+++
T Consensus 238 ~~~~~~~L~~L~l 250 (592)
T 3ogk_B 238 FFKAAANLEEFCG 250 (592)
T ss_dssp HHHHCTTCCEEEE
T ss_pred HHhhhhHHHhhcc
Confidence 3333344444433
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.67 E-value=1.1e-08 Score=69.80 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=52.4
Q ss_pred cccccCccEEeccCCCCcc--hhhhcc-CCCCCEEEccCccccccchhcc-cCCCCCCEEeccCCccCC---hhhhcCCC
Q 048165 28 LANLTNLKKLDLDGCGITT--IQGLAK-LKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLT---TLGLANLP 100 (124)
Q Consensus 28 ~~~~~~l~~L~l~~~~l~~--~~~~~~-~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~---~~~~~~~~ 100 (124)
+..+++|+.|++++ .++. +..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.... ......++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34566777777765 4444 233333 6778888888777765544444 457788888888776210 11234567
Q ss_pred CCCEEeeeccCC
Q 048165 101 NLKTLDLRDCGI 112 (124)
Q Consensus 101 ~L~~l~l~~n~~ 112 (124)
+|+.|++++|++
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 788888888876
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=8e-08 Score=56.75 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=67.9
Q ss_pred ccccccCccEEeccCC-CCcch------hhhccCCCCCEEEccCccccccchh----cccCCCCCCEEeccCCc------
Q 048165 27 GLANLTNLKKLDLDGC-GITTI------QGLAKLKNLEALDLSSNYYLHGSLE----GLANLTNLQVLDLSGNQ------ 89 (124)
Q Consensus 27 ~~~~~~~l~~L~l~~~-~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~------ 89 (124)
.+...+.++.|++++| .+... ..+...++|++|++++|.+.+.... .+...+.|++|++++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4567889999999999 88761 3456678999999999999854433 34456889999999996
Q ss_pred -cCChhhhcCCCCCCEEee--eccCCCCc
Q 048165 90 -NLTTLGLANLPNLKTLDL--RDCGITTI 115 (124)
Q Consensus 90 -~~~~~~~~~~~~L~~l~l--~~n~~~~~ 115 (124)
.+ ...+...+.|+.|++ ++|.+.+.
T Consensus 111 ~~l-~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 111 LAL-VEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHH-HHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHH-HHHHHhCCCceEEEecCCCCCCCHH
Confidence 12 345667789999999 88988753
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.54 E-value=8.4e-07 Score=58.37 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=59.7
Q ss_pred ccccccccccCccEEeccCCCCc-----c--hhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc-cCChh
Q 048165 23 LTRLGLANLTNLKKLDLDGCGIT-----T--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-NLTTL 94 (124)
Q Consensus 23 ~~~~~~~~~~~l~~L~l~~~~l~-----~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~ 94 (124)
++...|..|++|+.+.+.++.+. . ...+..+++|+.+++.++ +.......|..|.+|+.+.+..+- .+...
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~ 340 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPANVTQINFS 340 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTTCCEECTT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECccccEEcHH
Confidence 33355667777777777766554 1 235667777777777743 554555667777788888776553 55556
Q ss_pred hhcCCCCCCEEeeeccCCCCc
Q 048165 95 GLANLPNLKTLDLRDCGITTI 115 (124)
Q Consensus 95 ~~~~~~~L~~l~l~~n~~~~~ 115 (124)
.+..| +|+.+++.+|.+..+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBC
T ss_pred hCCCC-CCCEEEEcCCCCccc
Confidence 67777 788888877766544
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=5.5e-07 Score=56.16 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=57.4
Q ss_pred cccccCccE--EeccCCCCcchh-----hhccCCCCCEEEccCccccc--cchhcccCCCCCCEEeccCCccCChhhhcC
Q 048165 28 LANLTNLKK--LDLDGCGITTIQ-----GLAKLKNLEALDLSSNYYLH--GSLEGLANLTNLQVLDLSGNQNLTTLGLAN 98 (124)
Q Consensus 28 ~~~~~~l~~--L~l~~~~l~~~~-----~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 98 (124)
+...+.|.. ++++.|.....+ ....+++|++|++++|.+.+ ..+..+..+++|+.|++++|..-....+..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 333444554 556666444321 12357899999999999885 233455678899999999997221233444
Q ss_pred CC--CCCEEeeeccCCCC
Q 048165 99 LP--NLKTLDLRDCGITT 114 (124)
Q Consensus 99 ~~--~L~~l~l~~n~~~~ 114 (124)
+. .|+.|++++|++..
T Consensus 217 l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp GTTSCCSEEECTTSTTGG
T ss_pred cccCCcceEEccCCcCcc
Confidence 44 89999999999874
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=2.4e-06 Score=56.25 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=59.9
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCcccc-----ccchhcc
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYL-----HGSLEGL 74 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~-----~~~~~~~ 74 (124)
.+|++|+.+.+..+- . .++...|.+ .+|+.+.+.. .++.. ..+..+++|+.+++.++.+. ......|
T Consensus 223 ~~~~~L~~l~l~~~l---~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 223 LKTSQLKTIEIPENV---S-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTCTTCCCEECCTTC---C-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hCCCCCCEEecCCCc---c-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 344555555554432 1 222233333 4455555522 23332 35667778888888776543 2344567
Q ss_pred cCCCCCCEEeccCCc-cCChhhhcCCCCCCEEeeecc
Q 048165 75 ANLTNLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDC 110 (124)
Q Consensus 75 ~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n 110 (124)
..|.+|+.+.+..+- .+....+..|.+|+.+.+..+
T Consensus 297 ~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 297 EGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT
T ss_pred hCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc
Confidence 778888888887543 565667778888888887543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=1.6e-07 Score=60.97 Aligned_cols=54 Identities=26% Similarity=0.344 Sum_probs=28.2
Q ss_pred CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhc--cCCCCCEEEcc
Q 048165 3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLA--KLKNLEALDLS 62 (124)
Q Consensus 3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~--~~~~L~~l~l~ 62 (124)
.+|+|++|.++++. .. .++ . + .+++|+.|++..|.+.. ...+. .+|+|+.|+++
T Consensus 170 ~~P~L~~L~L~g~~--~l-~l~-~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 170 AMPLLNNLKIKGTN--NL-SIG-K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TCTTCCEEEEECCB--TC-BCC-S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred cCCCCcEEEEeCCC--Cc-eec-c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 46777888777763 11 222 1 2 25566666666555544 12222 45566666553
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.29 E-value=1.6e-05 Score=52.04 Aligned_cols=105 Identities=13% Similarity=0.245 Sum_probs=74.2
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.+|..|+.+.+.... . .+....+..+..|+.+.+... ++.. ..+..+.+|+.+++..+ +......+|..|.
T Consensus 261 F~~c~~L~~i~lp~~~---~-~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV---V-SIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTCSSCCEEECCTTC---C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eeecccccEEeccccc---c-eecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 4567777777776553 1 344456777888888888643 4442 46777888999988764 4435556788888
Q ss_pred CCCEEeccCCc-cCChhhhcCCCCCCEEeeeccC
Q 048165 79 NLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDCG 111 (124)
Q Consensus 79 ~L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~ 111 (124)
+|+.+.+..+- .+....+..|.+|+.+++.++.
T Consensus 335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 99999886553 6767788889999999887753
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=1.5e-05 Score=51.77 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=67.3
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
.++..|+.+.+..+- . .+....+..+.+++.+.+..+ ++.. ..+..+.+|+.+.+.++.+.......|..|.+
T Consensus 237 ~~~~~L~~i~lp~~v---~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 237 YGMKALDEIAIPKNV---T-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTCSSCCEEEECTTC---C-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred cCCccceEEEcCCCc---c-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 345556666554442 2 233345566777777777544 3332 35667888888888877776555677888888
Q ss_pred CCEEeccCCc-cCChhhhcCCCCCCEEeeec
Q 048165 80 LQVLDLSGNQ-NLTTLGLANLPNLKTLDLRD 109 (124)
Q Consensus 80 L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~ 109 (124)
|+.+.+..+- .+....+..|.+|+.+.+..
T Consensus 312 L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 312 LSSVTLPTALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred CCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence 8888886553 56566777888888777643
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=1.9e-05 Score=51.68 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=72.7
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.+|..|+.+.+... +. .++...|.+|.+|+.+.+..+ ++.. ..+..+.+|+.+.+..+ +......+|..|.
T Consensus 284 F~~c~~L~~i~l~~~---i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR---IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTCTTCCEEECCTT---CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred cccccccccccCCCc---cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 467889999988654 33 456678899999999999865 5543 47888999999999765 5546667899999
Q ss_pred CCCEEeccCCccCChhhhcCCCCCCEEeeeccC
Q 048165 79 NLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCG 111 (124)
Q Consensus 79 ~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 111 (124)
+|+.+.+.++... ...+..+..|+.+.+..+.
T Consensus 358 ~L~~i~~~~~~~~-~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ-WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEESSCHHH-HHTCBCCCCC---------
T ss_pred CCCEEEECCceee-hhhhhccCCCCEEEeCCCC
Confidence 9999999887522 3456677888888876654
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.11 E-value=5.3e-06 Score=46.27 Aligned_cols=54 Identities=22% Similarity=0.168 Sum_probs=34.0
Q ss_pred cEEeccCCCCc--chhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc
Q 048165 35 KKLDLDGCGIT--TIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89 (124)
Q Consensus 35 ~~L~l~~~~l~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 89 (124)
..++.+++.++ .++. .-..+++.|++++|.++...+..+..+++|+.+++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46677777776 4332 123367788888887775444555666777777777664
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=1.4e-05 Score=51.97 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=65.0
Q ss_pred CCcCcEEeccccccc---c----CCcccccccccccCccEEeccCCC-CcchhhhccCCCCCEEEccCccccccchhccc
Q 048165 4 LRYLQVLDLSANYNI---T----SGSLTRLGLANLTNLKKLDLDGCG-ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA 75 (124)
Q Consensus 4 ~~~l~~l~l~~~~~~---~----~~~~~~~~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 75 (124)
+++|+.|.+...... + .+.+. ..+..+++|+.|+++++. +. .+.+ .+++|+.|++..+.+.......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence 578888877544200 0 01122 345678899999998873 32 2233 378999999998887654444444
Q ss_pred --CCCCCCEEeccCCc-------cCC--hhhh--cCCCCCCEEeeeccCCC
Q 048165 76 --NLTNLQVLDLSGNQ-------NLT--TLGL--ANLPNLKTLDLRDCGIT 113 (124)
Q Consensus 76 --~~~~L~~l~l~~~~-------~~~--~~~~--~~~~~L~~l~l~~n~~~ 113 (124)
.+++|++|+++.+. .+. ...+ ..+++|++|++..|.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 67888888875321 010 0111 24678888888777765
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.95 E-value=3.8e-05 Score=50.23 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=72.6
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN 79 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 79 (124)
..+..++.+...... ++...+..+.+|+.+.+..+ ++.. ..+..+.+|+.+++..+ +......+|..|.+
T Consensus 273 ~~~~~l~~~~~~~~~------i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI------VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp TTCTTCCEEEECSSE------ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred ccccccceeccCcee------eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 456666666554443 23346778889999988765 4443 46778889999998754 55455677888999
Q ss_pred CCEEeccCCc-cCChhhhcCCCCCCEEeeecc
Q 048165 80 LQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDC 110 (124)
Q Consensus 80 L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n 110 (124)
|+.+.+..+- .+....+..|.+|+.+++..+
T Consensus 345 L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 345 LSNINFPLSLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence 9999987664 666778889999999988654
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=2.5e-05 Score=46.59 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCCcCcEEecccc-ccccCCc----ccccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccch
Q 048165 3 NLRYLQVLDLSAN-YNITSGS----LTRLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGSL 71 (124)
Q Consensus 3 ~~~~l~~l~l~~~-~~~~~~~----~~~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~ 71 (124)
+-+.|++|+++.+ . +... +. ..+..-+.|+.|++++|.+.+. ..+..-..|++|++++|.+.+...
T Consensus 39 ~n~~L~~L~L~~nn~--igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKR--VSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCS--SCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred cCCCccEEECCCCCC--CCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3467889999875 5 4311 12 3445567799999999998872 244556789999999999886544
Q ss_pred hc----ccCCCCCCEEeccCCc--cCC-------hhhhcCCCCCCEEeeeccC
Q 048165 72 EG----LANLTNLQVLDLSGNQ--NLT-------TLGLANLPNLKTLDLRDCG 111 (124)
Q Consensus 72 ~~----~~~~~~L~~l~l~~~~--~~~-------~~~~~~~~~L~~l~l~~n~ 111 (124)
.. +.....|+.|++.++. .++ ...+..-+.|..++++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 33 4455679999997542 222 2234556788888887654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.79 E-value=0.00025 Score=46.39 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=58.8
Q ss_pred CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165 2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ 81 (124)
Q Consensus 2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 81 (124)
.+|..++.+.+..+. . .+....+..+..++.+......+.. ..+..+.+|+.+.+..+ +......+|..|.+|+
T Consensus 250 ~~~~~l~~~~~~~~~--~--~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 250 YGCTDLESISIQNNK--L--RIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTCSSCCEEEECCTT--C--EECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccceeEEcCCCc--c--eeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCC
Confidence 456666666665553 1 2233455666666666655443222 23455666777776554 3334445666777777
Q ss_pred EEeccCCc-cCChhhhcCCCCCCEEeeecc
Q 048165 82 VLDLSGNQ-NLTTLGLANLPNLKTLDLRDC 110 (124)
Q Consensus 82 ~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n 110 (124)
.+.+..+- .++...+..|.+|+.+.+..+
T Consensus 324 ~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 324 SIDLPYLVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EECCCTTCCEECTTTTTTCTTCCEECCCTT
T ss_pred EEEeCCcccEEhHHhccCCCCCCEEEECcc
Confidence 77775443 555556667777777766544
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.74 E-value=0.00017 Score=46.84 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165 1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT 78 (124)
Q Consensus 1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 78 (124)
|.+|.+++.+.+..+- . .++...+.+|.+|+.+.+..+.++.. ..+..+.+|+.+.+..+ +......+|..|.
T Consensus 259 F~~~~~l~~i~l~~~i---~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 259 LQNCTALKTLNFYAKV---K-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTCTTCCEEEECCCC---S-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeehhccccccccc---e-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 4567888888886553 3 34546788999999999998888774 47888999999999765 5545567888999
Q ss_pred CCCEEeccCCc-cCChhhhcCCC
Q 048165 79 NLQVLDLSGNQ-NLTTLGLANLP 100 (124)
Q Consensus 79 ~L~~l~l~~~~-~~~~~~~~~~~ 100 (124)
+|+.+.+..+- .++...+..|.
T Consensus 334 ~L~~i~ip~~v~~I~~~aF~~c~ 356 (379)
T 4h09_A 334 ALSTISYPKSITLIESGAFEGSS 356 (379)
T ss_dssp TCCCCCCCTTCCEECTTTTTTSS
T ss_pred CCCEEEECCccCEEchhHhhCCC
Confidence 99999886553 55555666664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=0.00028 Score=42.09 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=60.0
Q ss_pred ccccCccEEeccCC-CCcc------hhhhccCCCCCEEEccCccccccchhccc----CCCCCCEEeccCCc-------c
Q 048165 29 ANLTNLKKLDLDGC-GITT------IQGLAKLKNLEALDLSSNYYLHGSLEGLA----NLTNLQVLDLSGNQ-------N 90 (124)
Q Consensus 29 ~~~~~l~~L~l~~~-~l~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~L~~l~l~~~~-------~ 90 (124)
..-+.|+.|+++++ .+.. ...+..-..|+.|++++|.+.+.....+. ....|++|++..|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44578999999986 7765 13566667899999999999865544433 56899999999996 1
Q ss_pred CChhhhcCCCCCCEEeeecc
Q 048165 91 LTTLGLANLPNLKTLDLRDC 110 (124)
Q Consensus 91 ~~~~~~~~~~~L~~l~l~~n 110 (124)
+ ...+..-..|+.|+++++
T Consensus 118 l-a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 L-LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp H-HHHTTTTCCCSEEECCCC
T ss_pred H-HHHHhhCCceeEEECCCC
Confidence 2 234455678999999865
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.00 E-value=0.0023 Score=35.49 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.2
Q ss_pred CccEEeccCCCCcch--hhhccCCCCCEEEccCcccc
Q 048165 33 NLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYL 67 (124)
Q Consensus 33 ~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~ 67 (124)
+++.|+|++|.++.+ ..+..+++|+++++.+|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 578888888888884 35667888888888888654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.47 E-value=0.26 Score=25.92 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=24.9
Q ss_pred ccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCc
Q 048165 23 LTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSN 64 (124)
Q Consensus 23 ~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~ 64 (124)
+....|.+|.+|+.+.+-.+ ++. -..+..+.+|+.+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44456667777777777654 222 245666777777766553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.16 E-value=0.79 Score=24.01 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=24.1
Q ss_pred hhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCC
Q 048165 49 GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88 (124)
Q Consensus 49 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 88 (124)
.+..+..|+.+.+..+ ++.....+|..|.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 5566677777776654 22244456667777777766544
Done!