Query 048166
Match_columns 224
No_of_seqs 106 out of 1171
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02473 glutathione S-transfe 100.0 4.1E-34 8.8E-39 224.6 17.1 198 21-223 2-210 (214)
2 PRK09481 sspA stringent starva 100.0 1.9E-33 4.2E-38 220.3 17.2 186 20-223 9-201 (211)
3 PLN02395 glutathione S-transfe 100.0 2.7E-33 5.8E-38 220.1 17.2 198 21-223 2-209 (215)
4 PRK13972 GSH-dependent disulfi 100.0 3.6E-33 7.8E-38 219.4 11.9 191 21-223 1-204 (215)
5 PRK15113 glutathione S-transfe 100.0 9.5E-32 2.1E-36 211.2 13.8 194 21-223 5-207 (214)
6 PRK10542 glutathionine S-trans 100.0 2.3E-31 5E-36 206.9 14.0 189 22-223 1-196 (201)
7 PRK11752 putative S-transferas 100.0 4.9E-31 1.1E-35 213.0 14.5 191 21-222 44-256 (264)
8 TIGR01262 maiA maleylacetoacet 100.0 1.6E-30 3.4E-35 203.6 16.3 190 23-223 1-203 (210)
9 KOG0868 Glutathione S-transfer 100.0 8.3E-32 1.8E-36 196.0 8.2 189 21-223 5-206 (217)
10 PRK10357 putative glutathione 100.0 2.2E-30 4.7E-35 201.7 15.1 192 22-224 1-200 (202)
11 COG0625 Gst Glutathione S-tran 100.0 2.9E-30 6.3E-35 202.3 15.9 184 22-219 1-199 (211)
12 KOG0406 Glutathione S-transfer 100.0 3E-29 6.4E-34 193.6 14.9 191 20-224 8-211 (231)
13 KOG0867 Glutathione S-transfer 100.0 1.2E-29 2.5E-34 200.3 11.6 197 21-222 2-207 (226)
14 TIGR00862 O-ClC intracellular 100.0 2.9E-28 6.2E-33 192.3 15.8 179 27-224 17-220 (236)
15 PLN02378 glutathione S-transfe 100.0 8.2E-28 1.8E-32 188.6 13.3 173 26-223 17-198 (213)
16 PLN02817 glutathione dehydroge 99.9 1.8E-26 3.8E-31 185.8 14.9 172 27-223 71-250 (265)
17 PTZ00057 glutathione s-transfe 99.9 5.7E-26 1.2E-30 177.2 13.9 181 21-223 4-198 (205)
18 PRK10387 glutaredoxin 2; Provi 99.9 1.2E-25 2.7E-30 175.8 12.5 180 22-219 1-208 (210)
19 KOG4420 Uncharacterized conser 99.9 1.4E-24 3E-29 167.1 12.4 200 19-223 24-286 (325)
20 TIGR02182 GRXB Glutaredoxin, G 99.9 2.4E-23 5.3E-28 162.8 12.0 177 23-218 1-206 (209)
21 KOG1695 Glutathione S-transfer 99.9 4.9E-21 1.1E-25 147.0 13.9 188 20-222 2-198 (206)
22 KOG1422 Intracellular Cl- chan 99.8 2.4E-19 5.2E-24 134.6 12.4 177 27-224 19-205 (221)
23 PLN02907 glutamate-tRNA ligase 99.8 1.4E-19 3E-24 162.5 11.2 151 22-217 3-159 (722)
24 cd03052 GST_N_GDAP1 GST_N fami 99.7 2.3E-17 4.9E-22 107.3 6.3 69 22-91 1-73 (73)
25 cd03048 GST_N_Ure2p_like GST_N 99.7 6.5E-17 1.4E-21 107.4 7.4 74 21-95 1-80 (81)
26 KOG4244 Failed axon connection 99.7 8E-17 1.7E-21 125.2 7.3 194 5-215 38-273 (281)
27 cd03045 GST_N_Delta_Epsilon GS 99.7 1.1E-16 2.4E-21 104.4 6.5 70 22-92 1-74 (74)
28 cd03050 GST_N_Theta GST_N fami 99.6 4.9E-16 1.1E-20 101.9 6.9 72 22-94 1-76 (76)
29 cd03053 GST_N_Phi GST_N family 99.6 5.1E-16 1.1E-20 101.8 6.9 70 22-92 2-75 (76)
30 cd03041 GST_N_2GST_N GST_N fam 99.6 3.5E-16 7.6E-21 102.9 5.5 71 21-94 1-77 (77)
31 PF13417 GST_N_3: Glutathione 99.6 4.4E-16 9.6E-21 101.9 5.4 70 24-97 1-74 (75)
32 cd03061 GST_N_CLIC GST_N famil 99.6 7.5E-16 1.6E-20 103.4 6.0 67 27-97 20-89 (91)
33 cd03046 GST_N_GTT1_like GST_N 99.6 1.5E-15 3.3E-20 99.5 7.0 73 22-95 1-76 (76)
34 cd03056 GST_N_4 GST_N family, 99.6 1.2E-15 2.6E-20 99.1 6.4 69 22-91 1-73 (73)
35 cd03057 GST_N_Beta GST_N famil 99.6 1.5E-15 3.3E-20 99.8 6.7 73 22-95 1-77 (77)
36 cd03047 GST_N_2 GST_N family, 99.6 1.4E-15 3.1E-20 98.9 6.3 69 22-91 1-73 (73)
37 cd03059 GST_N_SspA GST_N famil 99.6 2.4E-15 5.2E-20 97.7 6.7 69 22-94 1-73 (73)
38 cd03058 GST_N_Tau GST_N family 99.6 2.8E-15 6.1E-20 97.8 6.5 69 22-94 1-74 (74)
39 cd03051 GST_N_GTT2_like GST_N 99.6 2.1E-15 4.6E-20 98.1 5.9 69 22-91 1-74 (74)
40 cd03042 GST_N_Zeta GST_N famil 99.6 3.8E-15 8.3E-20 96.7 6.4 69 22-91 1-73 (73)
41 cd03187 GST_C_Phi GST_C family 99.6 1.2E-14 2.6E-19 103.2 9.3 84 139-222 35-118 (118)
42 cd03044 GST_N_EF1Bgamma GST_N 99.6 6.4E-15 1.4E-19 96.3 6.2 68 23-92 2-74 (75)
43 PF02798 GST_N: Glutathione S- 99.6 6.1E-15 1.3E-19 96.7 6.0 69 22-92 3-76 (76)
44 COG0435 ECM4 Predicted glutath 99.6 2.8E-14 6.2E-19 111.5 9.5 196 16-222 46-284 (324)
45 cd03055 GST_N_Omega GST_N fami 99.5 1.9E-14 4.2E-19 97.2 7.4 81 7-91 4-89 (89)
46 PF13409 GST_N_2: Glutathione 99.5 8.5E-15 1.8E-19 94.4 5.2 64 28-92 1-69 (70)
47 KOG3029 Glutathione S-transfer 99.5 5.3E-14 1.1E-18 110.2 10.1 192 18-215 87-355 (370)
48 cd03076 GST_N_Pi GST_N family, 99.5 1.2E-14 2.6E-19 94.5 5.3 67 22-92 2-72 (73)
49 cd03198 GST_C_CLIC GST_C famil 99.5 4E-14 8.6E-19 102.1 8.0 82 143-224 23-124 (134)
50 cd03060 GST_N_Omega_like GST_N 99.5 2.5E-14 5.5E-19 92.5 6.2 62 23-88 2-65 (71)
51 cd03039 GST_N_Sigma_like GST_N 99.5 3E-14 6.6E-19 92.3 5.4 68 22-92 1-72 (72)
52 cd03196 GST_C_5 GST_C family, 99.5 5.8E-14 1.3E-18 99.5 7.1 77 146-222 38-115 (115)
53 cd03038 GST_N_etherase_LigE GS 99.5 4.3E-14 9.3E-19 94.5 5.9 67 27-95 14-84 (84)
54 PF00043 GST_C: Glutathione S- 99.5 1.3E-13 2.9E-18 94.0 7.7 72 144-216 23-95 (95)
55 cd03188 GST_C_Beta GST_C famil 99.5 1.5E-13 3.2E-18 96.9 7.8 77 144-222 38-114 (114)
56 cd03049 GST_N_3 GST_N family, 99.5 7.3E-14 1.6E-18 90.8 5.7 66 22-91 1-73 (73)
57 cd03080 GST_N_Metaxin_like GST 99.5 1.2E-13 2.6E-18 90.3 6.7 64 21-95 1-75 (75)
58 cd03075 GST_N_Mu GST_N family, 99.5 1.1E-13 2.3E-18 92.1 6.3 71 23-94 2-82 (82)
59 cd03037 GST_N_GRX2 GST_N famil 99.5 6.4E-14 1.4E-18 90.5 5.1 66 22-92 1-71 (71)
60 cd03186 GST_C_SspA GST_N famil 99.5 3.4E-13 7.3E-18 94.2 8.4 78 144-222 30-107 (107)
61 cd03043 GST_N_1 GST_N family, 99.4 1.8E-13 4E-18 88.9 5.8 63 27-91 8-73 (73)
62 PF13410 GST_C_2: Glutathione 99.4 4.1E-13 8.8E-18 86.2 7.3 68 144-211 1-69 (69)
63 cd03204 GST_C_GDAP1 GST_C fami 99.4 4.8E-13 1E-17 93.5 8.0 78 141-218 21-111 (111)
64 cd03183 GST_C_Theta GST_C fami 99.4 8E-13 1.7E-17 95.0 9.3 82 141-223 37-121 (126)
65 cd03178 GST_C_Ure2p_like GST_C 99.4 6.2E-13 1.3E-17 93.7 8.6 80 142-222 33-112 (113)
66 cd03209 GST_C_Mu GST_C family, 99.4 5E-13 1.1E-17 95.5 8.0 79 144-223 30-108 (121)
67 cd03190 GST_C_ECM4_like GST_C 99.4 4.8E-13 1E-17 98.3 7.7 82 142-223 30-117 (142)
68 cd03180 GST_C_2 GST_C family, 99.4 1.9E-12 4E-17 90.6 10.0 75 142-218 36-110 (110)
69 cd03207 GST_C_8 GST_C family, 99.4 6.8E-13 1.5E-17 92.0 7.3 75 146-223 27-101 (103)
70 cd03040 GST_N_mPGES2 GST_N fam 99.4 3.2E-13 6.9E-18 88.7 5.0 68 21-94 1-76 (77)
71 cd03191 GST_C_Zeta GST_C famil 99.4 2E-12 4.3E-17 92.3 8.5 78 145-224 40-119 (121)
72 cd03184 GST_C_Omega GST_C fami 99.4 6E-13 1.3E-17 95.5 5.7 79 145-223 28-112 (124)
73 cd03182 GST_C_GTT2_like GST_C 99.4 2E-12 4.4E-17 91.6 8.3 76 142-218 42-117 (117)
74 cd03185 GST_C_Tau GST_C family 99.4 1.6E-12 3.5E-17 93.3 7.7 81 144-224 30-115 (126)
75 cd03201 GST_C_DHAR GST_C famil 99.4 1.6E-12 3.5E-17 92.8 7.3 76 148-223 29-109 (121)
76 cd03077 GST_N_Alpha GST_N fami 99.4 1.3E-12 2.7E-17 86.3 6.2 67 22-95 2-77 (79)
77 cd03210 GST_C_Pi GST_C family, 99.4 2E-12 4.3E-17 93.1 7.8 79 144-223 30-111 (126)
78 cd03189 GST_C_GTT1_like GST_C 99.4 2E-12 4.4E-17 91.9 7.7 71 144-216 49-119 (119)
79 COG2999 GrxB Glutaredoxin 2 [P 99.4 1.2E-11 2.5E-16 90.9 11.5 182 22-219 1-208 (215)
80 cd03177 GST_C_Delta_Epsilon GS 99.4 1.9E-12 4.1E-17 92.0 6.9 76 146-222 35-110 (118)
81 cd03208 GST_C_Alpha GST_C fami 99.4 3.8E-12 8.3E-17 92.9 8.2 75 148-223 38-114 (137)
82 cd03181 GST_C_EFB1gamma GST_C 99.4 2.5E-12 5.4E-17 91.9 7.0 83 142-224 33-116 (123)
83 cd03203 GST_C_Lambda GST_C fam 99.3 2E-12 4.3E-17 92.3 6.3 71 153-224 34-111 (120)
84 KOG2903 Predicted glutathione 99.3 3.7E-12 8E-17 98.9 7.5 195 20-222 36-286 (319)
85 cd03206 GST_C_7 GST_C family, 99.3 5.3E-12 1.1E-16 87.1 7.4 71 146-218 30-100 (100)
86 KOG3027 Mitochondrial outer me 99.3 1.5E-11 3.4E-16 92.4 10.0 195 8-215 4-248 (257)
87 cd00570 GST_N_family Glutathio 99.3 7.1E-12 1.5E-16 79.9 6.1 67 22-91 1-71 (71)
88 cd03054 GST_N_Metaxin GST_N fa 99.3 8.6E-12 1.9E-16 80.7 5.9 56 27-93 14-72 (72)
89 cd03202 GST_C_etherase_LigE GS 99.3 2.3E-11 5E-16 87.3 7.3 69 147-215 56-124 (124)
90 cd03194 GST_C_3 GST_C family, 99.2 4E-11 8.8E-16 84.7 7.6 71 149-224 41-114 (114)
91 cd03179 GST_C_1 GST_C family, 99.2 9E-11 2E-15 81.3 7.1 71 141-213 35-105 (105)
92 PF14497 GST_C_3: Glutathione 99.2 6.7E-11 1.5E-15 81.4 6.3 67 145-214 31-99 (99)
93 cd03193 GST_C_Metaxin GST_C fa 99.2 1.1E-10 2.3E-15 78.6 6.7 70 144-213 14-88 (88)
94 cd03195 GST_C_4 GST_C family, 99.1 2.4E-10 5.3E-15 80.7 7.4 72 146-222 39-111 (114)
95 cd00299 GST_C_family Glutathio 99.1 3.5E-10 7.6E-15 77.2 7.0 70 143-212 30-100 (100)
96 cd03192 GST_C_Sigma_like GST_C 99.1 4E-10 8.7E-15 78.1 6.3 68 144-212 34-104 (104)
97 cd03211 GST_C_Metaxin2 GST_C f 99.1 2.2E-10 4.7E-15 82.4 4.7 70 144-213 52-126 (126)
98 cd03079 GST_N_Metaxin2 GST_N f 99.0 5.8E-10 1.3E-14 71.9 6.1 57 26-92 14-73 (74)
99 cd03205 GST_C_6 GST_C family, 99.0 1.2E-09 2.6E-14 74.9 7.1 69 141-212 29-98 (98)
100 cd03200 GST_C_JTV1 GST_C famil 99.0 1.2E-09 2.5E-14 74.8 6.6 58 152-214 38-95 (96)
101 cd03212 GST_C_Metaxin1_3 GST_C 98.9 2E-09 4.3E-14 78.4 6.4 71 144-214 59-134 (137)
102 cd03197 GST_C_mPGES2 GST_C fam 98.8 6.8E-09 1.5E-13 75.7 6.1 65 150-214 80-145 (149)
103 PRK10638 glutaredoxin 3; Provi 98.7 3E-08 6.5E-13 65.9 4.5 66 20-88 2-68 (83)
104 TIGR02190 GlrX-dom Glutaredoxi 98.6 1.2E-07 2.5E-12 62.4 5.1 69 19-91 7-79 (79)
105 cd03078 GST_N_Metaxin1_like GS 98.5 2.4E-07 5.3E-12 59.9 5.5 56 27-93 14-72 (73)
106 cd02976 NrdH NrdH-redoxin (Nrd 98.5 2E-07 4.3E-12 59.7 4.9 64 22-88 2-66 (73)
107 cd03027 GRX_DEP Glutaredoxin ( 98.4 3.7E-07 7.9E-12 59.0 4.1 64 21-87 2-66 (73)
108 cd03029 GRX_hybridPRX5 Glutare 98.4 1.1E-06 2.4E-11 56.5 5.4 64 21-88 2-66 (72)
109 TIGR02200 GlrX_actino Glutared 98.4 6E-07 1.3E-11 58.3 4.1 64 22-88 2-68 (77)
110 PRK10329 glutaredoxin-like pro 98.3 2E-06 4.3E-11 56.8 5.2 69 21-93 2-72 (81)
111 KOG3028 Translocase of outer m 98.2 4E-05 8.6E-10 61.9 12.7 171 28-214 16-233 (313)
112 cd02066 GRX_family Glutaredoxi 98.2 1.8E-06 3.8E-11 55.0 4.2 64 22-88 2-66 (72)
113 TIGR02196 GlrX_YruB Glutaredox 98.2 3.9E-06 8.4E-11 53.7 4.7 65 21-88 1-66 (74)
114 COG0695 GrxC Glutaredoxin and 98.0 1.1E-05 2.3E-10 53.1 4.4 64 21-85 2-66 (80)
115 cd03418 GRX_GRXb_1_3_like Glut 98.0 9.7E-06 2.1E-10 52.4 4.2 64 22-88 2-67 (75)
116 PF14834 GST_C_4: Glutathione 98.0 1.9E-05 4.2E-10 54.5 5.4 72 144-220 38-110 (117)
117 TIGR02194 GlrX_NrdH Glutaredox 97.9 1.7E-05 3.6E-10 51.0 4.0 59 22-84 1-61 (72)
118 TIGR02181 GRX_bact Glutaredoxi 97.8 2E-05 4.3E-10 51.5 3.7 64 22-88 1-65 (79)
119 PF00462 Glutaredoxin: Glutare 97.8 1E-05 2.2E-10 50.0 2.0 59 22-83 1-60 (60)
120 TIGR02189 GlrX-like_plant Glut 97.7 4.9E-05 1.1E-09 52.1 4.0 69 19-88 7-77 (99)
121 PHA03050 glutaredoxin; Provisi 97.7 8E-05 1.7E-09 51.8 4.5 68 20-88 13-85 (108)
122 cd03419 GRX_GRXh_1_2_like Glut 97.5 0.00014 3.1E-09 47.6 3.9 66 22-88 2-69 (82)
123 PRK11200 grxA glutaredoxin 1; 97.4 0.00035 7.5E-09 46.4 4.9 71 21-94 2-83 (85)
124 TIGR00365 monothiol glutaredox 97.3 0.00039 8.4E-09 47.4 4.5 66 20-88 12-83 (97)
125 TIGR02183 GRXA Glutaredoxin, G 97.2 0.00087 1.9E-08 44.6 5.1 70 22-94 2-82 (86)
126 cd03028 GRX_PICOT_like Glutare 97.0 0.0011 2.5E-08 44.4 4.3 66 20-88 8-79 (90)
127 PF04399 Glutaredoxin2_C: Glut 96.7 0.0081 1.8E-07 43.2 6.6 67 148-218 58-124 (132)
128 PRK12759 bifunctional gluaredo 96.5 0.0042 9.2E-08 53.5 5.0 65 20-88 2-76 (410)
129 cd03031 GRX_GRX_like Glutaredo 96.3 0.0055 1.2E-07 45.0 4.0 64 22-88 2-76 (147)
130 PF10568 Tom37: Outer mitochon 96.3 0.015 3.2E-07 37.3 5.4 53 27-88 12-66 (72)
131 cd03199 GST_C_GRX2 GST_C famil 96.3 0.02 4.4E-07 40.9 6.6 66 149-218 60-125 (128)
132 TIGR02180 GRX_euk Glutaredoxin 96.1 0.014 3.1E-07 38.0 5.0 66 23-88 2-70 (84)
133 cd02973 TRX_GRX_like Thioredox 95.9 0.021 4.6E-07 35.6 4.6 56 22-84 3-64 (67)
134 PRK01655 spxA transcriptional 95.5 0.016 3.4E-07 41.8 3.3 32 21-53 1-33 (131)
135 cd03032 ArsC_Spx Arsenate Redu 95.3 0.021 4.5E-07 40.1 3.3 32 21-53 1-33 (115)
136 PRK10824 glutaredoxin-4; Provi 95.2 0.031 6.7E-07 39.3 3.9 66 20-88 15-86 (115)
137 cd03036 ArsC_like Arsenate Red 95.1 0.022 4.7E-07 39.8 2.9 31 22-53 1-32 (111)
138 cd02977 ArsC_family Arsenate R 94.6 0.036 7.8E-07 38.2 2.9 31 22-53 1-32 (105)
139 PTZ00062 glutaredoxin; Provisi 94.5 0.058 1.3E-06 41.9 4.1 67 19-88 112-184 (204)
140 PRK12559 transcriptional regul 94.4 0.047 1E-06 39.3 3.3 32 21-53 1-33 (131)
141 PRK13344 spxA transcriptional 94.3 0.051 1.1E-06 39.2 3.3 32 21-53 1-33 (132)
142 TIGR00412 redox_disulf_2 small 94.1 0.2 4.3E-06 32.2 5.5 55 22-84 3-61 (76)
143 KOG1752 Glutaredoxin and relat 93.4 0.17 3.7E-06 34.9 4.4 67 21-88 15-83 (104)
144 PRK10026 arsenate reductase; P 93.4 0.1 2.2E-06 38.1 3.4 33 20-53 2-35 (141)
145 TIGR01617 arsC_related transcr 93.1 0.095 2.1E-06 36.9 2.9 31 22-53 1-32 (117)
146 COG1393 ArsC Arsenate reductas 92.8 0.13 2.8E-06 36.3 3.2 32 21-53 2-34 (117)
147 PRK10853 putative reductase; P 92.8 0.13 2.8E-06 36.3 3.2 32 21-53 1-33 (118)
148 cd03035 ArsC_Yffb Arsenate Red 92.5 0.13 2.9E-06 35.4 2.9 31 22-53 1-32 (105)
149 cd03033 ArsC_15kD Arsenate Red 92.2 0.17 3.7E-06 35.4 3.2 31 22-53 2-33 (113)
150 COG4545 Glutaredoxin-related p 91.8 0.3 6.5E-06 31.2 3.5 63 21-84 3-77 (85)
151 cd03030 GRX_SH3BGR Glutaredoxi 91.3 0.41 8.9E-06 32.2 4.1 64 22-88 2-76 (92)
152 KOG1147 Glutamyl-tRNA syntheta 91.1 0.12 2.5E-06 45.5 1.6 67 151-217 90-157 (712)
153 TIGR01616 nitro_assoc nitrogen 90.7 0.31 6.7E-06 34.8 3.2 31 22-53 3-34 (126)
154 PF11801 Tom37_C: Tom37 C-term 90.6 0.77 1.7E-05 34.6 5.5 40 153-192 112-155 (168)
155 cd03026 AhpF_NTD_C TRX-GRX-lik 89.7 0.65 1.4E-05 30.9 4.0 60 18-84 12-77 (89)
156 PHA02125 thioredoxin-like prot 88.1 1.3 2.8E-05 28.2 4.4 50 22-78 2-52 (75)
157 PF13192 Thioredoxin_3: Thiore 88.1 1.7 3.7E-05 27.8 5.0 57 22-86 3-63 (76)
158 cd03034 ArsC_ArsC Arsenate Red 87.9 0.57 1.2E-05 32.7 2.8 31 22-53 1-32 (112)
159 TIGR00014 arsC arsenate reduct 87.7 0.58 1.3E-05 32.7 2.8 31 22-53 1-32 (114)
160 TIGR00411 redox_disulf_1 small 87.3 1.8 4E-05 27.6 4.9 55 22-81 3-62 (82)
161 PF05768 DUF836: Glutaredoxin- 84.1 4.5 9.8E-05 26.2 5.5 53 22-80 2-57 (81)
162 cd01659 TRX_superfamily Thiore 80.8 2.3 5E-05 24.6 3.1 50 24-77 4-58 (69)
163 COG0278 Glutaredoxin-related p 80.3 2.2 4.7E-05 29.0 2.9 69 17-88 12-87 (105)
164 PF04908 SH3BGR: SH3-binding, 68.2 5.7 0.00012 27.1 2.6 64 22-88 3-82 (99)
165 cd02956 ybbN ybbN protein fami 67.2 7.2 0.00016 25.7 3.0 57 22-83 17-79 (96)
166 cd02949 TRX_NTR TRX domain, no 66.1 13 0.00027 24.7 4.0 54 25-83 21-80 (97)
167 cd02947 TRX_family TRX family; 66.1 26 0.00056 22.0 5.6 53 23-82 16-75 (93)
168 KOG1668 Elongation factor 1 be 65.5 5.1 0.00011 31.5 2.2 59 155-219 10-68 (231)
169 cd02953 DsbDgamma DsbD gamma f 64.8 8.3 0.00018 25.9 3.0 52 24-77 18-77 (104)
170 PF03960 ArsC: ArsC family; I 64.6 6.2 0.00013 27.2 2.3 27 26-53 3-29 (110)
171 PRK15317 alkyl hydroperoxide r 61.7 10 0.00022 33.9 3.7 68 19-88 117-185 (517)
172 TIGR03143 AhpF_homolog putativ 58.5 23 0.00049 32.0 5.4 60 19-85 477-542 (555)
173 KOG2501 Thioredoxin, nucleored 58.5 12 0.00026 27.8 2.9 45 21-66 35-88 (157)
174 TIGR03140 AhpF alkyl hydropero 57.2 13 0.00029 33.1 3.7 68 19-88 118-186 (515)
175 cd02989 Phd_like_TxnDC9 Phosdu 55.4 42 0.00091 23.1 5.3 58 23-84 28-89 (113)
176 cd02963 TRX_DnaJ TRX domain, D 46.9 58 0.0013 22.2 4.9 57 22-83 29-92 (111)
177 PTZ00051 thioredoxin; Provisio 45.8 54 0.0012 21.3 4.5 56 23-82 24-83 (98)
178 cd02975 PfPDO_like_N Pyrococcu 44.7 34 0.00074 23.5 3.4 53 20-77 23-80 (113)
179 PHA02278 thioredoxin-like prot 44.1 93 0.002 21.1 5.5 60 23-83 20-85 (103)
180 cd02959 ERp19 Endoplasmic reti 43.0 76 0.0017 22.0 5.0 58 22-84 24-91 (117)
181 cd02984 TRX_PICOT TRX domain, 39.9 46 0.00099 21.6 3.4 57 22-83 19-81 (97)
182 cd02997 PDI_a_PDIR PDIa family 39.5 34 0.00073 22.5 2.7 58 22-82 22-87 (104)
183 PF00085 Thioredoxin: Thioredo 38.2 1.1E+02 0.0024 19.7 5.9 55 23-83 23-84 (103)
184 TIGR01295 PedC_BrcD bacterioci 38.0 1.4E+02 0.003 20.9 6.1 15 26-40 32-46 (122)
185 PRK09381 trxA thioredoxin; Pro 37.8 53 0.0012 22.0 3.5 57 22-83 26-88 (109)
186 cd02962 TMX2 TMX2 family; comp 37.7 79 0.0017 23.2 4.6 59 21-84 51-122 (152)
187 PF11732 Thoc2: Transcription- 34.2 68 0.0015 20.7 3.2 42 169-213 35-76 (77)
188 cd02948 TRX_NDPK TRX domain, T 32.2 55 0.0012 21.8 2.9 56 22-82 22-83 (102)
189 cd02955 SSP411 TRX domain, SSP 31.3 87 0.0019 22.1 3.8 61 25-86 23-97 (124)
190 cd02957 Phd_like Phosducin (Ph 30.3 77 0.0017 21.6 3.4 56 22-83 29-89 (113)
191 KOG0911 Glutaredoxin-related p 29.6 87 0.0019 24.7 3.8 67 19-88 138-210 (227)
192 cd02952 TRP14_like Human TRX-r 29.4 1.7E+02 0.0036 20.6 4.9 60 27-87 38-107 (119)
193 cd02954 DIM1 Dim1 family; Dim1 28.2 66 0.0014 22.5 2.7 55 24-83 21-81 (114)
194 cd02999 PDI_a_ERp44_like PDIa 27.8 50 0.0011 22.1 2.0 21 21-41 22-42 (100)
195 PRK10996 thioredoxin 2; Provis 27.5 94 0.002 22.2 3.5 56 23-83 58-119 (139)
196 cd02951 SoxW SoxW family; SoxW 27.5 1.4E+02 0.0031 20.5 4.4 16 22-37 19-34 (125)
197 cd02985 TRX_CDSP32 TRX family, 27.5 80 0.0017 21.1 3.0 61 22-83 20-84 (103)
198 TIGR01068 thioredoxin thioredo 26.4 61 0.0013 20.9 2.2 56 22-82 19-80 (101)
199 cd02987 Phd_like_Phd Phosducin 26.2 1.3E+02 0.0027 22.7 4.1 56 23-83 89-148 (175)
200 COG5515 Uncharacterized conser 23.1 70 0.0015 19.6 1.7 15 27-41 13-27 (70)
201 cd02994 PDI_a_TMX PDIa family, 21.9 96 0.0021 20.3 2.5 51 22-77 21-76 (101)
202 cd03002 PDI_a_MPD1_like PDI fa 21.3 1.3E+02 0.0028 19.9 3.1 53 22-77 23-79 (109)
203 TIGR00636 PduO_Nterm ATP:cob(I 20.6 2.8E+02 0.0061 20.9 5.0 69 146-214 77-150 (171)
204 cd03003 PDI_a_ERdj5_N PDIa fam 20.6 1E+02 0.0022 20.2 2.5 56 22-81 23-83 (101)
205 PF00392 GntR: Bacterial regul 20.6 1E+02 0.0022 18.6 2.2 28 155-182 3-31 (64)
No 1
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=4.1e-34 Score=224.59 Aligned_cols=198 Identities=29% Similarity=0.433 Sum_probs=156.6
Q ss_pred ceEEecC-CCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcC
Q 048166 21 SLKFIAR-HHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHAS 96 (224)
Q Consensus 21 ~~~ly~~-~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~ 96 (224)
.||||+. .||+++||+++|.++|++ |+.+.++...++++.++|+++||.|+||+|+++|.+|+||.+ ||++.+++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~-ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIE-FEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCC-ceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 3799965 799999999999999999 999999988888889999999999999999999999999999 99999975
Q ss_pred CCCCCCCCcCCccccchhee-ecc-----ccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 048166 97 TGKEEPICCGLVASKESAII-EMH-----QFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSKSKY 170 (224)
Q Consensus 97 ~~~~~~L~p~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 170 (224)
.+ .+|+| .++.+++.+ .+. .+.......+......+..+...+.+..+....++.+.++.||++|++++|
T Consensus 81 ~~--~~l~p--~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 156 (214)
T PLN02473 81 QG--TDLLG--KTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRY 156 (214)
T ss_pred cC--CCCCC--CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 42 26999 888888877 221 122211222222222222233344566777888999999999999998899
Q ss_pred eecCCCchhhhhhHhHHHHhhhCc-ccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 171 LAGDDCTMADMQYIPCLVYFMRTP-KAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 171 l~G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
++||++|+||+++++.+.++.... .....+++|+|.+|++|+.+||+|++++.
T Consensus 157 l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 157 LGGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHH
Confidence 999999999999999988765432 12235889999999999999999998763
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.9e-33 Score=220.31 Aligned_cols=186 Identities=13% Similarity=0.115 Sum_probs=148.8
Q ss_pred CceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhc
Q 048166 20 TSLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHA 95 (224)
Q Consensus 20 ~~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~ 95 (224)
.+|+||+ +.||+|++|+++|+++|++ |+.+.+++. ++.++|+++||.|+||+|+++|.+|+||.| ||+++++
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~-~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~ 84 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVS-VEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFP 84 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCC-CEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCC
Confidence 3699996 5899999999999999999 999998863 467899999999999999999999999999 9999998
Q ss_pred CCCCCCCCCcCCccccchhee-eccccC-hhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceeec
Q 048166 96 STGKEEPICCGLVASKESAII-EMHQFD-GPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLAG 173 (224)
Q Consensus 96 ~~~~~~~L~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 173 (224)
.. .|+| .++.+++.+ .+..+. ..+.... ... . ..++...+...+++...++.+|++|.+++|++|
T Consensus 85 ~~----~l~p--~~~~~ra~~~~~~~~~~~~~~~~~-~~~----~--~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 151 (211)
T PRK09481 85 HP----PLMP--VYPVARGESRLMMHRIEKDWYSLM-NKI----V--NGSASEADAARKQLREELLAIAPVFGEKPYFMS 151 (211)
T ss_pred CC----CCCC--CCHHHHHHHHHHHHHHHHHHHHHH-HHH----h--cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence 65 7999 888888875 222211 1111111 111 1 113455677788899999999999998999999
Q ss_pred CCCchhhhhhHhHHHHhhhCccccc-CCCChhHHHHHHHhhhchhhhhhcc
Q 048166 174 DDCTMADMQYIPCLVYFMRTPKAAA-VTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 174 ~~~t~AD~~~~~~l~~~~~~~~~~~-~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+++|+||+++++.+.++...+ ... ...+|+|.+|++++.+||+|++++.
T Consensus 152 ~~~t~AD~~l~~~~~~~~~~~-~~~~~~~~p~l~~w~~~~~~rp~~~~~~~ 201 (211)
T PRK09481 152 EEFSLVDCYLAPLLWRLPVLG-IELSGPGAKELKGYMTRVFERDSFLASLT 201 (211)
T ss_pred CCccHHHHHHHHHHHHHHhcC-CCCCCCCChhHHHHHHHHhccHHHHHHcC
Confidence 999999999999998776543 222 2679999999999999999998864
No 3
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=2.7e-33 Score=220.08 Aligned_cols=198 Identities=30% Similarity=0.523 Sum_probs=156.3
Q ss_pred ceEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCC
Q 048166 21 SLKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHAST 97 (224)
Q Consensus 21 ~~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~ 97 (224)
.+|||+..+++++||+++|.++|++ |+.+.++...++++.++|.++||.|+||+|+++|.+|+||.+ ||+++++..
T Consensus 2 ~~~ly~~~~~~~~rv~~~L~e~gl~-~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAFASPKRALVTLIEKGVE-FETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCcCcHHHHHHHHHHcCCC-ceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 3899988778899999999999999 999999987777788999999999999999999999999999 999999753
Q ss_pred CCCCCCCcCCccccchhee-ecc-----ccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 048166 98 GKEEPICCGLVASKESAII-EMH-----QFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSKSKYL 171 (224)
Q Consensus 98 ~~~~~L~p~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 171 (224)
+ +.|+| .++.+++.+ .+. .+...+.............+...+++..+...+++.+.++.||++|++++|+
T Consensus 81 ~--~~l~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 81 G--PDLLG--KTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred C--cCcCC--CChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 2 26999 888888877 221 2222222222222222222223345566778888999999999999988999
Q ss_pred ecCCCchhhhhhHhHHHHhhhC-cccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 172 AGDDCTMADMQYIPCLVYFMRT-PKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 172 ~G~~~t~AD~~~~~~l~~~~~~-~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+|+++|+||+++++++.++... ......+.+|+|.+|++++.++|+|+++++
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~ 209 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLA 209 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHH
Confidence 9999999999999888776432 212346789999999999999999999875
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=3.6e-33 Score=219.40 Aligned_cols=191 Identities=18% Similarity=0.276 Sum_probs=146.7
Q ss_pred ceEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEe-----CC--eeeeecHH---HH
Q 048166 21 SLKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMED-----GG--DTLFNQGP---FA 90 (224)
Q Consensus 21 ~~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~-----~g--~~l~eS~a---yL 90 (224)
|||||+..+|++++|+++|+++||+ |+.+.+++..++++.++|.++||.|+||+|++ +| .+|+||.| ||
T Consensus 1 m~~Ly~~~~~~~~~v~~~L~e~gl~-~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAPTPNGHKITLFLEEAELD-YRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECCCCChHHHHHHHHHcCCC-cEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 4899987799999999999999999 99999998888888899999999999999996 45 47999999 99
Q ss_pred HhhhcCCCCCCCCCcCCccccchhee-eccccChh-HHHHHHHH-HhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 048166 91 STWHASTGKEEPICCGLVASKESAII-EMHQFDGP-IRSIIRQL-ILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSK 167 (224)
Q Consensus 91 ~~~~~~~~~~~~L~p~~~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 167 (224)
++.++ .+.| .++.+++.+ .+..+... +....... .... .....++...+...+++.+.+..||++|.+
T Consensus 80 ~~~~~------~l~p--~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 150 (215)
T PRK13972 80 AEKTG------LFLS--HETRERAATLQWLFWQVGGLGPMLGQNHHFNH-AAPQTIPYAIERYQVETQRLYHVLNKRLEN 150 (215)
T ss_pred HHhcC------CCCC--CCHHHHHHHHHHHHHHhhccCcceeeeeeeec-cCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99873 5777 788888876 22211110 00000000 0000 011223455667778899999999999998
Q ss_pred CceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 168 SKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 168 ~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
++|++||++|+||+++++.+..+... ....+.+|+|.+|++++.+||+|++++.
T Consensus 151 ~~~l~Gd~~t~ADi~l~~~~~~~~~~--~~~~~~~P~l~~w~~r~~~rp~~~~~~~ 204 (215)
T PRK13972 151 SPWLGGENYSIADIACWPWVNAWTRQ--RIDLAMYPAVKNWHERIRSRPATGQALL 204 (215)
T ss_pred CccccCCCCCHHHHHHHHHHHHHhhc--CCcchhCHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999998877655443 2336889999999999999999998764
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=99.98 E-value=9.5e-32 Score=211.17 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=147.3
Q ss_pred ceEEecC---CCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhh
Q 048166 21 SLKFIAR---HHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWH 94 (224)
Q Consensus 21 ~~~ly~~---~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~ 94 (224)
+|+||+. .||++++|+++|.++||+ |+.+.++...++++.++|+++||.|+||+|+++|.+|+||.+ ||++.+
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~-~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLP-FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCC-CeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 5899863 699999999999999999 999999998888888999999999999999999999999999 999999
Q ss_pred cCCCCCCCCCcCCccccchhee-eccccCh-hHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC-Ccee
Q 048166 95 ASTGKEEPICCGLVASKESAII-EMHQFDG-PIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSK-SKYL 171 (224)
Q Consensus 95 ~~~~~~~~L~p~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l 171 (224)
++.. .++|+| .++.+++++ ++..+.. .+............+....++...+...+++.+.++.||++|++ ++|+
T Consensus 84 ~~~~-~~~l~p--~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l 160 (214)
T PRK15113 84 APPA-WERIYP--ADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNL 160 (214)
T ss_pred CCCC-ccccCC--CCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEe
Confidence 7540 013999 899998887 2222211 11111110000111111222334566777889999999999975 5799
Q ss_pred ecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 172 AGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 172 ~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+|+ +|+||+++++.+.++...+ . .. .|+|.+|++|+.+||+|+++.+
T Consensus 161 ~G~-~TlADi~l~~~l~~~~~~~-~-~~--~p~l~~~~~r~~~rp~~~~~~~ 207 (214)
T PRK15113 161 FGE-WCIADTDLALMLNRLVLHG-D-EV--PERLADYATFQWQRASVQRWLA 207 (214)
T ss_pred eCC-ccHHHHHHHHHHHHHHHcC-C-CC--CHHHHHHHHHHhcCHHHHHHHH
Confidence 996 9999999999998776542 2 22 2999999999999999998764
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.97 E-value=2.3e-31 Score=206.93 Aligned_cols=189 Identities=17% Similarity=0.216 Sum_probs=145.2
Q ss_pred eEEecCCCchHHHHHHHHHhCCCCcccccccccCCCC-CCCcchhhcCCCCccceEE-eCCeeeeecHH---HHHhhhcC
Q 048166 22 LKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGA-HMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FASTWHAS 96 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~-~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~~~~~~ 96 (224)
|+||+..++++++++++|+++||+ |+.+.+++..++ ++.++|.++||.|+||+|+ ++|.+|+||.+ ||++.++.
T Consensus 1 m~l~~~~~s~~~~~~~~L~~~gi~-~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGACSLASHITLRESGLD-FTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccHHHHHHHHHHHHcCCC-ceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 578876566899999999999999 999999987653 4568899999999999998 68899999999 99999986
Q ss_pred CCCCCCCCcCCccccchhee-eccccC-hhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecC
Q 048166 97 TGKEEPICCGLVASKESAII-EMHQFD-GPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGD 174 (224)
Q Consensus 97 ~~~~~~L~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 174 (224)
. .++|+ .++.+++.+ .+..+. ..+... +...+.....+...+...+++.+.++.||++|++++|++|+
T Consensus 80 ~----~l~~p-~~~~~ra~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 149 (201)
T PRK10542 80 R----QLLAP-VGSLSRYHTIEWLNYIATELHKG-----FTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQ 149 (201)
T ss_pred c----ccCCC-CCcHHHHHHHHHHHHHHhhhhhh-----hhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCC
Confidence 5 55532 677777765 211111 111111 11112112223445667788999999999999989999999
Q ss_pred CCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 175 DCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 175 ~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
++|+||+++++++.+..... ...+.+|+|.+|++++.++|+|++++.
T Consensus 150 ~~s~ADi~l~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~k~~~~ 196 (201)
T PRK10542 150 RFTIADAYLFTVLRWAYAVK--LNLEGLEHIAAYMQRVAERPAVAAALK 196 (201)
T ss_pred CCcHHhHHHHHHHHHhhccC--CCcccchHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999988876542 235789999999999999999998764
No 7
>PRK11752 putative S-transferase; Provisional
Probab=99.97 E-value=4.9e-31 Score=212.97 Aligned_cols=191 Identities=16% Similarity=0.185 Sum_probs=148.7
Q ss_pred ceEEecCCCchHHHHHHHHHhC------CCCcccccccccCCCCCCCcchhhcCCCCccceEEeC----CeeeeecHH--
Q 048166 21 SLKFIARHHPAAQHECCSAYEK------DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDG----GDTLFNQGP-- 88 (224)
Q Consensus 21 ~~~ly~~~sp~~~~v~~~L~~~------gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~----g~~l~eS~a-- 88 (224)
+|+||+..||+++||+++|+++ |++ |+.+.|++..++++.++|.++||.|+||+|+++ |.+|+||.+
T Consensus 44 ~~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~-ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLGTPNGQKVTIMLEELLALGVKGAE-YDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCCCCchHHHHHHHHHHHhccCCCCc-eEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 7999988899999999999997 999 999999988888888999999999999999963 368999999
Q ss_pred -HHHhhhcCCCCCCCCCcCCccccchhee-eccccChhHHHHHH---HHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048166 89 -FASTWHASTGKEEPICCGLVASKESAII-EMHQFDGPIRSIIR---QLILHPLRGLVPDEKITEAEMEKLGKVLDVCEE 163 (224)
Q Consensus 89 -yL~~~~~~~~~~~~L~p~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 163 (224)
||++.++ .|+| .++.+++.+ .+..+......... ..... ......+...+...+++.+.++.||+
T Consensus 123 ~YL~~~~~------~L~P--~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~le~ 192 (264)
T PRK11752 123 LYLAEKFG------AFLP--KDLAARTETLNWLFWQQGSAPFLGGGFGHFYA--YAPEKIEYAINRFTMEAKRQLDVLDK 192 (264)
T ss_pred HHHHHhcC------CcCC--CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--hCCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999874 5899 888888877 33222211111110 01111 11122244566677888999999999
Q ss_pred HhcCCceeecCCCchhhhhhHhHHHHhhhC---c--ccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 164 RLSKSKYLAGDDCTMADMQYIPCLVYFMRT---P--KAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 164 ~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~---~--~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
+|++++||+||++|+|||++++.+.++... . .....+.+|+|.+|+++|.+||+|++++
T Consensus 193 ~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~ 256 (264)
T PRK11752 193 QLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGR 256 (264)
T ss_pred HhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHH
Confidence 999889999999999999999888776431 1 1123578999999999999999999875
No 8
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.97 E-value=1.6e-30 Score=203.56 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=146.4
Q ss_pred EEe-cCCCchHHHHHHHHHhCCCCcccccccccCC-CCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCC
Q 048166 23 KFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVN-GAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHAST 97 (224)
Q Consensus 23 ~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~-~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~ 97 (224)
+|| +..||++++|+++|.++||+ |+.+.++... ++++.++|.++||.|+||+|+++|.+|+||.+ ||++.+++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~-~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGID-YEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCC-ceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 367 56999999999999999999 9999988633 45567889999999999999999999999999 999999865
Q ss_pred CCCCCCCcCCccccchhee-ecc-----ccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC--Cc
Q 048166 98 GKEEPICCGLVASKESAII-EMH-----QFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSK--SK 169 (224)
Q Consensus 98 ~~~~~L~p~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~ 169 (224)
.|+| .++.+++.+ ++. .+.......... ......+. ......+...+++.+.++.||++|++ ++
T Consensus 80 ----~l~p--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 151 (210)
T TIGR01262 80 ----PLLP--ADPIKRARVRALALLIACDIHPLNNLRVLQ-YLREKLGV-EEEARNRWYQHWISKGFAALEALLQPHAGA 151 (210)
T ss_pred ----CCCC--CCHHHHHHHHHHHHHHhcccChhhhhhHHH-HHHhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 7999 888888887 221 122111111111 11111111 12233455667799999999999986 56
Q ss_pred eeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 170 YLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 170 ~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
|++|+++|+||+++++.+.+..... ...++||+|.+|+++|.+||+|+++++
T Consensus 152 ~l~G~~~T~ADi~~~~~l~~~~~~~--~~~~~~p~l~~~~~~~~~rp~~~~~~~ 203 (210)
T TIGR01262 152 FCVGDTPTLADLCLVPQVYNAERFG--VDLTPYPTLRRIAAALAALPAFQRAHP 203 (210)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHcC--CCcccchHHHHHHHHHhcCHHHHHhCc
Confidence 9999999999999999998876542 235889999999999999999999875
No 9
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.3e-32 Score=196.02 Aligned_cols=189 Identities=16% Similarity=0.146 Sum_probs=153.1
Q ss_pred ceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCC-CCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhc
Q 048166 21 SLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNG-AHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHA 95 (224)
Q Consensus 21 ~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~-~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~ 95 (224)
...|| +..|++++|||++|.++||+ |+.++|++..+ .+...+|.++||+++||+|++||.+|+||.| ||++.+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iD-Yey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGID-YEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCC-cceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 46788 56999999999999999999 99999999887 5556799999999999999999999999999 9999999
Q ss_pred CCCCCCCCCcCCccccchhee-e-----ccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC--
Q 048166 96 STGKEEPICCGLVASKESAII-E-----MHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSK-- 167 (224)
Q Consensus 96 ~~~~~~~L~p~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-- 167 (224)
+. +|.| +++..|+.. + ..++.+.-.-.+...+ +......-...+...+.+.+..||+.|..
T Consensus 84 ~p----pLLP--~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l-----~ek~~~~~~~W~q~~ItkGF~ALEklL~~~a 152 (217)
T KOG0868|consen 84 DP----PLLP--KDPHKRAKARAISLLIASGIQPLQNLSVLKML-----NEKEPGYGDQWAQHFITKGFTALEKLLKSHA 152 (217)
T ss_pred CC----CCCC--cCHHHHHHHHHHHHHHHhCCCcchhhHHHHHh-----cccccchhhHHHHHHHHHhHHHHHHHHHHcc
Confidence 87 9999 999999887 1 1222221111121111 22211112455667788889999998865
Q ss_pred CceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 168 SKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 168 ~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+.|-+||++|+||+++.+.++...++ ..+...||.+.+..+.+.+.|+|+.+-|
T Consensus 153 GkycvGDevtiADl~L~pqv~nA~rf--~vdl~PYPti~ri~e~l~elpaFq~ahP 206 (217)
T KOG0868|consen 153 GKYCVGDEVTIADLCLPPQVYNANRF--HVDLTPYPTITRINEELAELPAFQAAHP 206 (217)
T ss_pred CCcccCceeehhhhccchhhhhhhhc--cccCCcCchHHHHHHHHHhCHHHHhcCC
Confidence 78999999999999999999999776 4668999999999999999999998876
No 10
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.97 E-value=2.2e-30 Score=201.69 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=145.6
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHHhhhcC
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FASTWHAS 96 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~~~~~~ 96 (224)
|+||+ ..||++++|+++|+++|++ |+.+.++...+ .+++.+.||.|+||+|+ ++|.+|+||.+ ||++.++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~-ye~~~~~~~~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 76 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGIT-FEFVNELPYNA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVA 76 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCC-CeEEecCCCCC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCC
Confidence 57885 4999999999999999999 99988876543 45677789999999998 78899999999 99998865
Q ss_pred CCCCCCCCcCCccccchhee-eccccChhHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecC
Q 048166 97 TGKEEPICCGLVASKESAII-EMHQFDGPIRSIIRQLILHPLR-GLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGD 174 (224)
Q Consensus 97 ~~~~~~L~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 174 (224)
. .|+| .++.+++.+ ++..+................. +...+++..+...+++.+.++.||++|.+++ ++||
T Consensus 77 ~----~l~p--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd 149 (202)
T PRK10357 77 P----AMLP--RDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTD 149 (202)
T ss_pred C----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCC
Confidence 4 7999 888888766 2222211111111111111111 2233455667788899999999999998888 9999
Q ss_pred CCchhhhhhHhHHHHhhhCc-ccccCCCChhHHHHHHHhhhchhhhhhccC
Q 048166 175 DCTMADMQYIPCLVYFMRTP-KAAAVTPRPCANAWWNDIASGMQLLKLQKA 224 (224)
Q Consensus 175 ~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 224 (224)
++|+||+++++.+.++.... ......++|+|.+|++++.+||+|+++.|.
T Consensus 150 ~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 150 TVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred CcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 99999999999998775422 122347899999999999999999999874
No 11
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-30 Score=202.29 Aligned_cols=184 Identities=23% Similarity=0.330 Sum_probs=146.3
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCC-eeeeecHH---HHHhhhcC
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGG-DTLFNQGP---FASTWHAS 96 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g-~~l~eS~a---yL~~~~~~ 96 (224)
|+|| ...||+++||+++|.++|++ |+.+.|+... +++.++|..+||.|+||+|+++| .+|+||.| ||+++++.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~-ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLP-YEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCC-ceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCC
Confidence 4677 45889999999999999999 9999999987 77889999999999999999655 49999999 99999986
Q ss_pred CCCCCCCCcCCcccc---chhee-ec-----cccChhHHHHHHHHHhccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Q 048166 97 TGKEEPICCGLVASK---ESAII-EM-----HQFDGPIRSIIRQLILHPLRGLVP-DEKITEAEMEKLGKVLDVCEERLS 166 (224)
Q Consensus 97 ~~~~~~L~p~~~~~~---~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~ 166 (224)
. .|+| .++. +++.+ .+ ..+...+....... .. .... +....+...+.+...++.+|+.|+
T Consensus 79 ~----~l~p--~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~le~~L~ 148 (211)
T COG0625 79 P----PLLP--ADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LG---SEPELLEAALEAARAEIRALLALLEALLA 148 (211)
T ss_pred C----CcCC--CCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-cc---ccccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 4999 7775 45444 22 12222222222111 11 1112 467788999999999999999999
Q ss_pred CCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhh
Q 048166 167 KSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLL 219 (224)
Q Consensus 167 ~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~ 219 (224)
+++|++|+++|+||+++++.+.++.... ...+.+|++.+|++|+.++|+++
T Consensus 149 ~~~~l~G~~~tiAD~~~~~~~~~~~~~~--~~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 149 DGPYLAGDRFTIADIALAPLLWRLALLG--EELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred cCCcccCCCCCHHHHHHHHHHHHhhhcC--cccccChHHHHHHHHHHcCCchh
Confidence 9999999999999999999999866543 22388999999999999999953
No 12
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-29 Score=193.56 Aligned_cols=191 Identities=18% Similarity=0.200 Sum_probs=154.4
Q ss_pred CceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcC-CCCccceEEeCCeeeeecHH---HHHhhh
Q 048166 20 TSLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLN-PFGLMLAMEDGGDTLFNQGP---FASTWH 94 (224)
Q Consensus 20 ~~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~n-p~g~vP~L~~~g~~l~eS~a---yL~~~~ 94 (224)
+.++|| +..|||++|++++|+++||+ |+.+++++.+ +.++|++.| +.++||+|+++|.+|.||.. ||++.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~-yE~veedl~~---Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIP-YEYVEEDLTN---KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCc-eEEEecCCCC---CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhc
Confidence 568999 56999999999999999999 9999999876 788999999 57999999999999999999 999999
Q ss_pred cCCCCCCCCCcCCccccchhee-eccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCceee
Q 048166 95 ASTGKEEPICCGLVASKESAII-EMHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLS-KSKYLA 172 (224)
Q Consensus 95 ~~~~~~~~L~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~ 172 (224)
++. ++++| +||.+|+.. .+..+.+.........+.. ....+..+...+.+.+.+..||+.|. +.+|+.
T Consensus 84 ~~~---~~iLP--~DPy~Ra~arfwa~~id~~~~~~~~~~~~-----~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fg 153 (231)
T KOG0406|consen 84 PSG---PPILP--SDPYERAQARFWAEYIDKKVFFVGRFVVA-----AKGGEEQEAAKEELREALKVLEEELGKGKDFFG 153 (231)
T ss_pred cCC---CCCCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHh-----hcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 964 49999 999999976 2333322111111111211 12235566778889999999999998 789999
Q ss_pred cCCCchhhhhhHhHHHHhhhCc------ccccCCCChhHHHHHHHhhhchhhhhhccC
Q 048166 173 GDDCTMADMQYIPCLVYFMRTP------KAAAVTPRPCANAWWNDIASGMQLLKLQKA 224 (224)
Q Consensus 173 G~~~t~AD~~~~~~l~~~~~~~------~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 224 (224)
|+++++.|+++++++.++.... .....+.+|.|.+|.+||.++++|++++|.
T Consensus 154 G~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~ 211 (231)
T KOG0406|consen 154 GETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPD 211 (231)
T ss_pred CCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCC
Confidence 9999999999998888876532 123468899999999999999999999874
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=200.27 Aligned_cols=197 Identities=28% Similarity=0.400 Sum_probs=161.9
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcC
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHAS 96 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~ 96 (224)
.|+||+ ..||.+++|.+++.++|++ |+.+.+++..++++.++|+++||.|+||+|+|+|..|+||.| ||++++..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~-~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLE-VELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCc-eeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 378885 5999999999999999999 999999999999999999999999999999999999999999 99999972
Q ss_pred CCCCCCCCcCCccccchhee-eccccChhH-HHHH-HHHHhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceee
Q 048166 97 TGKEEPICCGLVASKESAII-EMHQFDGPI-RSII-RQLILHP-LRGLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLA 172 (224)
Q Consensus 97 ~~~~~~L~p~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 172 (224)
. +..|+| .++..++.+ ++..+.... .... ...++.+ .++...+....+.....+.+.++.+|.+|.++.|++
T Consensus 81 ~--~~~l~p--~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~ 156 (226)
T KOG0867|consen 81 L--GGILLP--KDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLA 156 (226)
T ss_pred C--CcccCC--cCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCccc
Confidence 2 234999 899999888 222222211 1111 2223344 345555778889999999999999999999999999
Q ss_pred cCCCchhhhhhHhHHHHhhhCc-ccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 173 GDDCTMADMQYIPCLVYFMRTP-KAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 173 G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
|+++|+||+.+.+.+..+.... ......++|++.+|++++.++|+++++.
T Consensus 157 g~~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~ 207 (226)
T KOG0867|consen 157 GDQLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEAN 207 (226)
T ss_pred CCcccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHH
Confidence 9999999999999999984211 2456899999999999999999988864
No 14
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.96 E-value=2.9e-28 Score=192.28 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=137.8
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCCCCCCCC
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHASTGKEEPI 103 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~~~~~~L 103 (224)
..||+|+||+++|.++||+ |+.+.+++.+ +.++|+++||.|+||+|+++|.+|+||.+ ||++.+++. ..+.+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~-~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~-~~p~l 91 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVV-FNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPP-RYPKL 91 (236)
T ss_pred CCCHhHHHHHHHHHHcCCC-cEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCC-CCCCC
Confidence 5799999999999999999 9999999875 47899999999999999999999999999 999999752 11245
Q ss_pred CcCCccccchheeeccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-----------------
Q 048166 104 CCGLVASKESAIIEMHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLS----------------- 166 (224)
Q Consensus 104 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----------------- 166 (224)
.| .++..++.. .. +...... ++. ..++...+...+.+.+.++.||++|.
T Consensus 92 ~p--~~~~~~~~~--~~----l~~~~~~-~~~-----~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~ 157 (236)
T TIGR00862 92 SP--KHPESNTAG--LD----IFAKFSA-YIK-----NSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKV 157 (236)
T ss_pred CC--CCHHHHHHH--HH----HHHHHHH-HHH-----cCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 55 444333310 00 1111111 111 11233445556678999999999996
Q ss_pred -CCceeecCCCchhhhhhHhHHHHhhhC----cccccCCCChhHHHHHHHhhhchhhhhhccC
Q 048166 167 -KSKYLAGDDCTMADMQYIPCLVYFMRT----PKAAAVTPRPCANAWWNDIASGMQLLKLQKA 224 (224)
Q Consensus 167 -~~~~l~G~~~t~AD~~~~~~l~~~~~~----~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 224 (224)
+++|+.|+++|+|||++++.+.++... .+..+.+++|+|.+|++++.++++|++++|+
T Consensus 158 ~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~ 220 (236)
T TIGR00862 158 SRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPD 220 (236)
T ss_pred cCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCC
Confidence 579999999999999999999988743 1344479999999999999999999999885
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=99.95 E-value=8.2e-28 Score=188.64 Aligned_cols=173 Identities=15% Similarity=0.186 Sum_probs=130.6
Q ss_pred cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCCCCCCC
Q 048166 26 ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHASTGKEEP 102 (224)
Q Consensus 26 ~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~~~~~~ 102 (224)
+..||||+||+++|+++|++ |+.+.+++.. +.++|+++||.|+||+|+++|.+|+||.+ ||+++++.. .
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~-~e~~~v~~~~---~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~----~ 88 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLT-YKIHLINLSD---KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP----P 88 (213)
T ss_pred CCCCcchHHHHHHHHHcCCC-CeEEEeCccc---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC----C
Confidence 56799999999999999999 9999998864 46789999999999999999999999999 999999754 4
Q ss_pred CCcCCccccchheeeccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc--CCceeecCCCchhh
Q 048166 103 ICCGLVASKESAIIEMHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLS--KSKYLAGDDCTMAD 180 (224)
Q Consensus 103 L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~AD 180 (224)
+. ++.+++.+.. .+...... +... .. ..+...+.+.+.++.||++|. +++|++||++|+||
T Consensus 89 l~----~~~~~a~i~~-----~~~~~~~~-~~~~---~~----~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~AD 151 (213)
T PLN02378 89 LK----TPAEFASVGS-----NIFGTFGT-FLKS---KD----SNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVD 151 (213)
T ss_pred CC----CHHHHHHHHH-----HHHHHHHH-HHhc---CC----hhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhh
Confidence 43 3445554311 11111111 1111 01 112334677788999999997 47999999999999
Q ss_pred hhhHhHHHHhhhC----cccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 181 MQYIPCLVYFMRT----PKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 181 ~~~~~~l~~~~~~----~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+++++.+.++... ......+.+|+|.+|+++|.+||+|+++++
T Consensus 152 i~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~ 198 (213)
T PLN02378 152 LSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKT 198 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccC
Confidence 9999998775421 112235789999999999999999998875
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.94 E-value=1.8e-26 Score=185.77 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=130.5
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCCCCCCCC
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHASTGKEEPI 103 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~~~~~~L 103 (224)
..|||++|++++|+++|++ |+.+.+++.+ +.++|.++||.|+||+|+++|.+|+||.+ ||++.+++. .|
T Consensus 71 g~cp~s~rV~i~L~ekgi~-ye~~~vdl~~---~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~----~L 142 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP-YDMKLVDLTN---KPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDP----PL 142 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC-CEEEEeCcCc---CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCC----CC
Confidence 4699999999999999999 9999998753 57889999999999999988889999999 999999865 55
Q ss_pred CcCCccccchheeeccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCchhhhh
Q 048166 104 CCGLVASKESAIIEMHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSK-SKYLAGDDCTMADMQ 182 (224)
Q Consensus 104 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~AD~~ 182 (224)
.+ +.+++.+.. .+...... +... . ++. +...+.+.+.++.||++|++ ++|++|+++|+||++
T Consensus 143 ~~----~~era~i~~-----~l~~~~~~-~~~~----~-~~~--~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~ 205 (265)
T PLN02817 143 AT----PPEKASVGS-----KIFSTFIG-FLKS----K-DPG--DGTEQALLDELTSFDDYIKENGPFINGEKISAADLS 205 (265)
T ss_pred CC----HHHHHHHHH-----HHHHHHHH-Hhcc----C-Ccc--hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHH
Confidence 33 455555411 11111111 1111 1 111 12235677889999999974 799999999999999
Q ss_pred hHhHHHHhhhC----cccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 183 YIPCLVYFMRT----PKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 183 ~~~~l~~~~~~----~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+++.+.++... .+....+.+|+|.+|++++.++|+|+++++
T Consensus 206 l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~ 250 (265)
T PLN02817 206 LGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRA 250 (265)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCC
Confidence 99998876432 112335789999999999999999999876
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.94 E-value=5.7e-26 Score=177.22 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=129.2
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchh--------hcCCCCccceEEeCCeeeeecHH---
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYL--------SLNPFGLMLAMEDGGDTLFNQGP--- 88 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~--------~~np~g~vP~L~~~g~~l~eS~a--- 88 (224)
+++||+ +.++++++||++|+++|++ |+.+.++. +.. ++. ..||.|+||+|+++|.+|+||.|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~-ye~~~~~~----~~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIE-YTDKRFGE----NGD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCC-eEEEeccc----cch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 388875 6899999999999999999 99986632 222 332 47999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCcCCccccchheeeccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 048166 89 FASTWHASTGKEEPICCGLVASKESAIIEMHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSKS 168 (224)
Q Consensus 89 yL~~~~~~~~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 168 (224)
||+++++ +.+ .+..+++.+.+. + ..+...... +... ....+...+...+.+.+.+..||+.|+++
T Consensus 78 YLa~~~~-------~~~--~~~~~~~~~~~~-~-~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 142 (205)
T PTZ00057 78 YLSKKYK-------ICG--ESELNEFYADMI-F-CGVQDIHYK-FNNT---NLFKQNETTFLNEELPKWSGYFENILKKN 142 (205)
T ss_pred HHHHHcC-------CCC--CCHHHHHHHHHH-H-HHHHHHHHH-Hhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999984 334 444444333111 1 111111100 0000 00012233456678999999999999753
Q ss_pred --ceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 169 --KYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 169 --~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+|++||++|+||+++++++.++.... ....+.+|+|.+|++|+.++|++++.+.
T Consensus 143 ~~~~l~Gd~~T~AD~~l~~~~~~~~~~~-~~~l~~~P~l~~~~~r~~~~P~~k~y~~ 198 (205)
T PTZ00057 143 HCNYFVGDNLTYADLAVFNLYDDIETKY-PNSLKNFPLLKAHNEFISNLPNIKNYIS 198 (205)
T ss_pred CCCeeeCCcccHHHHHHHHHHHHHHHhC-hhhhccChhHHHHHHHHHhChHHHHHHH
Confidence 89999999999999999888765321 3446899999999999999999998753
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.93 E-value=1.2e-25 Score=175.83 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=123.2
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHHhhhcC
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FASTWHAS 96 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~~~~~~ 96 (224)
|+||+ ..||+|+||+++|.++||+ |+.+.++... +..+ .+.||.|+||+|+ ++|.+|+||.+ ||++++++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~-y~~~~~~~~~--~~~~--~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~ 75 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIP-VELIVLANDD--EATP--IRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGK 75 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCC-eEEEEcCCCc--hhhH--HHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCC
Confidence 67885 5899999999999999999 9998875432 2222 5689999999995 88999999999 99999985
Q ss_pred CCCCCCCCcCCccccchhee-eccccC-hhHHHHHHHHHhccCC------------------CCCCCH---HHHHHHHHH
Q 048166 97 TGKEEPICCGLVASKESAII-EMHQFD-GPIRSIIRQLILHPLR------------------GLVPDE---KITEAEMEK 153 (224)
Q Consensus 97 ~~~~~~L~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~ 153 (224)
. .+.+ . +++.+ .+..+. ..+...+...+..... .....+ ...+...++
T Consensus 76 ~----~l~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
T PRK10387 76 P----LLTG--K---RSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKE 146 (210)
T ss_pred c----cCCC--c---ccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHH
Confidence 4 4542 1 12222 111100 0000000000000000 000000 011356778
Q ss_pred HHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhh
Q 048166 154 LGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLL 219 (224)
Q Consensus 154 ~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~ 219 (224)
+.+.++.+|++|++ +|++||++|+||+++++.+.++...++ ...+|+|.+|++||.+||++.
T Consensus 147 ~~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~---~~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 147 INADLRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKG---IEWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHHHHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecC---CCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999986 999999999999999999988876432 234699999999999999874
No 19
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.92 E-value=1.4e-24 Score=167.14 Aligned_cols=200 Identities=18% Similarity=0.176 Sum_probs=150.2
Q ss_pred CCceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhh
Q 048166 19 PTSLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWH 94 (224)
Q Consensus 19 ~~~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~ 94 (224)
+..+.|| ++.|-.|+|||+.+.++||. |+...|++..++++.+||..+||.|.||+|.++..+|.|++. |++.+|
T Consensus 24 ~e~~vLyhhpysf~sQkVrlvi~EK~id-~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf 102 (325)
T KOG4420|consen 24 RESLVLYHHPYSFSSQKVRLVIAEKGID-CEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTF 102 (325)
T ss_pred hhcceeeecCcccccceeeeehhhcccc-cceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhh
Confidence 3357787 56999999999999999999 999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCCCCCCcCCccccchhee-------ec-----c-------------ccChhHH---HHHHHH---Hhc------c-
Q 048166 95 ASTGKEEPICCGLVASKESAII-------EM-----H-------------QFDGPIR---SIIRQL---ILH------P- 136 (224)
Q Consensus 95 ~~~~~~~~L~p~~~~~~~~~~~-------~~-----~-------------~~~~~~~---~~~~~~---~~~------~- 136 (224)
-.+ ..|.|. .+..+..++ .+ . ...+... ..+... ++. +
T Consensus 103 ~ge---r~l~pe-~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pd 178 (325)
T KOG4420|consen 103 TGE---RVLMPE-VGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPD 178 (325)
T ss_pred ccc---cccccc-ccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCch
Confidence 766 378885 455554444 00 0 0001111 110000 000 0
Q ss_pred --------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC----CceeecCCCchhhhhhHhHHHHhhhCccc--
Q 048166 137 --------------LRGLVPDEKITEAEMEKLGKVLDVCEERLSK----SKYLAGDDCTMADMQYIPCLVYFMRTPKA-- 196 (224)
Q Consensus 137 --------------~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~AD~~~~~~l~~~~~~~~~-- 196 (224)
......+..........+.+.++.+|+.|.+ .+|++|+++|+||+.+.+.++++...+..
T Consensus 179 la~ay~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~ 258 (325)
T KOG4420|consen 179 LAEAYLAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKK 258 (325)
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHH
Confidence 0001222345566667778888888888876 68999999999999999999999887521
Q ss_pred cc-CCCChhHHHHHHHhhhchhhhhhcc
Q 048166 197 AA-VTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 197 ~~-~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
.+ .-+.|+|..|++|+++|++|+++++
T Consensus 259 yw~~gsrpnle~Yf~rvrrR~sf~kvlg 286 (325)
T KOG4420|consen 259 YWEDGSRPNLESYFERVRRRFSFRKVLG 286 (325)
T ss_pred hcccCCCccHHHHHHHHHhhhHHHHhhh
Confidence 22 3478999999999999999999875
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.90 E-value=2.4e-23 Score=162.80 Aligned_cols=177 Identities=10% Similarity=0.054 Sum_probs=117.9
Q ss_pred EEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHHhhhcCC
Q 048166 23 KFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FASTWHAST 97 (224)
Q Consensus 23 ~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~~~~~~~ 97 (224)
+|| +..||+|+|||++|.++|++ |+.+.+.. +++. ...+.||.|+||+|+ ++|.+|+||.+ ||+++++..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~-~e~~~~~~--~~~~--~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~ 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIP-VEKHVLLN--DDEE--TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEP 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCC-eEEEECCC--Ccch--hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCc
Confidence 477 45899999999999999999 99876543 2222 237899999999998 88999999999 999999643
Q ss_pred CCCCCCCcCCccccchhee-ecccc-ChhHHHHHHHHHhc-----------------cC-CCCCCCH---HHHHHHHHHH
Q 048166 98 GKEEPICCGLVASKESAII-EMHQF-DGPIRSIIRQLILH-----------------PL-RGLVPDE---KITEAEMEKL 154 (224)
Q Consensus 98 ~~~~~L~p~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-----------------~~-~~~~~~~---~~~~~~~~~~ 154 (224)
.+.| . .++.+ .+..+ ...+...+...+.. +. .+..... ...+...+.+
T Consensus 76 ----~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (209)
T TIGR02182 76 ----LLTG--K---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEI 146 (209)
T ss_pred ----cCCC--C---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHH
Confidence 3433 2 12222 11111 00111111000000 00 0000000 0013456778
Q ss_pred HHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCCh-hHHHHHHHhhhchhh
Q 048166 155 GKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRP-CANAWWNDIASGMQL 218 (224)
Q Consensus 155 ~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p-~l~~w~~r~~~~p~~ 218 (224)
++.++.+|++|++++|+. +++|+||+++++.+.++...++. .+| +|.+|++||++++++
T Consensus 147 ~~~l~~le~~L~~~~~l~-g~~TiADi~l~~~l~~~~~~~~~----~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 147 NADLEELDKLIDGPNAVN-GELSEDDILVFPLLRNLTLVAGI----NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHHHHHHHhCccccC-CCCCHHHHHHHHHhcCeeeecCC----CCChHHHHHHHHHHHHhCC
Confidence 999999999999999995 46999999999999877654311 256 999999999999876
No 21
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.9e-21 Score=147.04 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=139.7
Q ss_pred CceEE-ecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhc
Q 048166 20 TSLKF-IARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHA 95 (224)
Q Consensus 20 ~~~~l-y~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~ 95 (224)
..++| |++...++..+|++++..|++ |+...+..... ........|+|++|+|+.||..|.+|.| ||++++
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~-fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~- 76 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVS-FEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKF- 76 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCC-cceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHh-
Confidence 35788 588999999999999999999 99999886652 1223334899999999988999999999 999998
Q ss_pred CCCCCCCCCcCCccccchheeec--cccChhHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHHHHHHHHHhc--CCce
Q 048166 96 STGKEEPICCGLVASKESAIIEM--HQFDGPIRSIIRQLILHPLRGLVPDEKITE-AEMEKLGKVLDVCEERLS--KSKY 170 (224)
Q Consensus 96 ~~~~~~~L~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~--~~~~ 170 (224)
.|.+ .++.+.+.+.+ ..+.+....+....+.....+ ..+...+ .........+..+++.|. ++.|
T Consensus 77 ------gl~G--kt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g--~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgf 146 (206)
T KOG1695|consen 77 ------GLAG--KTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAG--KSEEELDKLYLPAKPKYFKILEKILKKNKSGF 146 (206)
T ss_pred ------CcCC--CCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhc--cchhhhhhhhccchHHHHHHHHHHHHhCCCCe
Confidence 5888 89999998822 223332222121112212111 1122222 455567778888888887 4689
Q ss_pred eecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 171 LAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 171 l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
++||++|+||++++..+..+...-.....+.+|.|.++.+|+.++|.+++-+
T Consensus 147 lvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i 198 (206)
T KOG1695|consen 147 LVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYL 198 (206)
T ss_pred eecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHH
Confidence 9999999999999999999887311445688899999999999999988754
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.4e-19 Score=134.58 Aligned_cols=177 Identities=16% Similarity=0.162 Sum_probs=138.7
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCCCCCCCC
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHASTGKEEPI 103 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~~~~~~L 103 (224)
..||+|+++.+.|.++|++ |.++.|++.+ +.++|.++.|.|++|+|..++..++||.. +|++.++.. ++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~-f~vttVd~~~---kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p----~~ 90 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVP-FKVTTVDLSR---KPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP----KL 90 (221)
T ss_pred CCChhHHHHHHHHHHcCCC-ceEEEeecCC---CcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC----CC
Confidence 3799999999999999999 9999999876 57889999999999999999999999999 999999865 33
Q ss_pred CcCCccccchheeeccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC---CceeecCCCchhh
Q 048166 104 CCGLVASKESAIIEMHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSK---SKYLAGDDCTMAD 180 (224)
Q Consensus 104 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~AD 180 (224)
-- -.+.+.+. ....+...+-..+.++ .++.-+..++.+...+..|+++|.. ++|+.||++|.||
T Consensus 91 ~~--~~~~E~as-----ag~diF~kF~~fi~ks------k~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aD 157 (221)
T KOG1422|consen 91 PT--LAPPESAS-----AGSDIFAKFSAFIKKS------KDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLAD 157 (221)
T ss_pred cc--cCCHHHHh-----hHHHHHHHHHHHHhCc------hhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeeh
Confidence 21 11333222 2222222222222222 3445566677888888999999974 8999999999999
Q ss_pred hhhHhHHHHhhhC----cccccCCCChhHHHHHHHhhhchhhhhhccC
Q 048166 181 MQYIPCLVYFMRT----PKAAAVTPRPCANAWWNDIASGMQLLKLQKA 224 (224)
Q Consensus 181 ~~~~~~l~~~~~~----~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 224 (224)
|.+++=|+.+... ..+...++++.+.+|++.+.++.+|..++|+
T Consensus 158 csLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~ 205 (221)
T KOG1422|consen 158 CSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPA 205 (221)
T ss_pred hhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCch
Confidence 9999999998753 2456678999999999999999999999885
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.81 E-value=1.4e-19 Score=162.51 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=117.9
Q ss_pred eEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHHhhhcCC
Q 048166 22 LKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FASTWHAST 97 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~~~~~~~ 97 (224)
++||+..++.+.++.++|+++|++ |+... .+|.|+||+|+ ++|.+|+||.| ||++.++..
T Consensus 3 ~kLy~~~~S~~~~v~~~L~~lgv~-~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSPPLAVIAAAKVAGVP-LTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-cEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 789988777788999999999999 98853 25899999999 68899999999 999999765
Q ss_pred CCCCCCCcCCccccchhee-eccccChhHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCC
Q 048166 98 GKEEPICCGLVASKESAII-EMHQFDGPIRSIIRQLILHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDC 176 (224)
Q Consensus 98 ~~~~~L~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 176 (224)
.|+| .++.+++.+ ++..+... + .. ...+.+.++.||++|++++||+|+++
T Consensus 67 ----~L~p--~d~~erAqV~qWL~~~~~-------------~--~~--------~~~l~~~L~~LE~~L~~rtYLvGd~l 117 (722)
T PLN02907 67 ----GFYG--QDAFESSQVDEWLDYAPT-------------F--SS--------GSEFENACEYVDGYLASRTFLVGYSL 117 (722)
T ss_pred ----CCCC--CCHHHHHHHHHHHHHHhh-------------c--cc--------HHHHHHHHHHHHHHhccCCeecCCCC
Confidence 7999 788887765 22221110 0 00 02356778999999999999999999
Q ss_pred chhhhhhHhHHHHhh-hCcccccCCCChhHHHHHHHhhhchh
Q 048166 177 TMADMQYIPCLVYFM-RTPKAAAVTPRPCANAWWNDIASGMQ 217 (224)
Q Consensus 177 t~AD~~~~~~l~~~~-~~~~~~~~~~~p~l~~w~~r~~~~p~ 217 (224)
|+||+++++.+.... ..........+|+|.+|++++.++|+
T Consensus 118 TLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 118 TIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred CHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 999999998886541 11112235789999999999999999
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.71 E-value=2.3e-17 Score=107.34 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=63.2
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAS 91 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~ 91 (224)
++||+ ..||+|+||+++|+++|++ |+.+.+++..++++.++|.++||.|+||+|+++|.+|+||.+ ||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~-~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLR-CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCC-CEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 36874 5899999999999999999 999999988777788899999999999999999999999999 874
No 25
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.70 E-value=6.5e-17 Score=107.43 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=67.2
Q ss_pred ceEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeC---CeeeeecHH---HHHhhh
Q 048166 21 SLKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDG---GDTLFNQGP---FASTWH 94 (224)
Q Consensus 21 ~~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~---g~~l~eS~a---yL~~~~ 94 (224)
|++||+..+|+|++++++|.++|++ |+.+.+++..++++.++|.++||.|+||+|+++ |.+|+||.+ ||++++
T Consensus 1 ~~~Ly~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGTPNGFKVSIMLEELGLP-YEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCCCChHHHHHHHHHcCCC-cEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 4899976669999999999999999 999999987667778899999999999999976 899999999 999988
Q ss_pred c
Q 048166 95 A 95 (224)
Q Consensus 95 ~ 95 (224)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 26
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.68 E-value=8e-17 Score=125.17 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=129.4
Q ss_pred ccccccccccCCCCCCceEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeee
Q 048166 5 KMNFLADIVRNQTLPTSLKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLF 84 (224)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~ 84 (224)
|.++.+|+++-.|.++ ...-.+.||||.||..+|+..+|| ||.+...+. ..++.|++|.++-+|+.++
T Consensus 38 k~d~kkD~VYLyQF~R-~~~~PnLSPfClKvEt~lR~~~Ip-YE~~~~~~~----------~rSr~G~lPFIELNGe~ia 105 (281)
T KOG4244|consen 38 KTDYKKDTVYLYQFPR-TKTCPNLSPFCLKVETFLRAYDIP-YEIVDCSLK----------RRSRNGTLPFIELNGEHIA 105 (281)
T ss_pred hhccccCeEEEEeccc-cCCCCCCChHHHHHHHHHHHhCCC-ceeccccce----------eeccCCCcceEEeCCeecc
Confidence 3456666666555555 444457999999999999999999 999865432 3567899999999999999
Q ss_pred ecHH---HHHhhhcCCCCCCCCCcCCccccchheee--------------------------ccc----cChhHHHHHHH
Q 048166 85 NQGP---FASTWHASTGKEEPICCGLVASKESAIIE--------------------------MHQ----FDGPIRSIIRQ 131 (224)
Q Consensus 85 eS~a---yL~~~~~~~~~~~~L~p~~~~~~~~~~~~--------------------------~~~----~~~~~~~~~~~ 131 (224)
||.. +|.+++.-. ..|.+. +....+|... ..+ +.+.+...++.
T Consensus 106 DS~~I~~~L~~hf~~~---~~L~~e-~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 181 (281)
T KOG4244|consen 106 DSDLIEDRLRKHFKIP---DDLSAE-QRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWK 181 (281)
T ss_pred ccHHHHHHHHHHcCCC---CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHH
Confidence 9999 999888654 235442 2233333220 001 11111122211
Q ss_pred HHhccC-CCC---CCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCc-----ccccCCCC
Q 048166 132 LILHPL-RGL---VPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTP-----KAAAVTPR 202 (224)
Q Consensus 132 ~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-----~~~~~~~~ 202 (224)
..+.+. .++ .-..-..++..+.+.+-++.+++.|++.+||.||++|-+|+.+|+.|..+.. + ...+-+++
T Consensus 182 ~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~ 260 (281)
T KOG4244|consen 182 AIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDF 260 (281)
T ss_pred HHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhc
Confidence 111110 000 0000112336677888999999999999999999999999999999998876 3 12335889
Q ss_pred hhHHHHHHHhhhc
Q 048166 203 PCANAWWNDIASG 215 (224)
Q Consensus 203 p~l~~w~~r~~~~ 215 (224)
|+|..|++|+++.
T Consensus 261 p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 261 PNLLEYCERIRKE 273 (281)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999863
No 27
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.68 E-value=1.1e-16 Score=104.37 Aligned_cols=70 Identities=19% Similarity=0.373 Sum_probs=64.3
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHh
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAST 92 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~ 92 (224)
|+|| ++.||+|++++++|+++|++ |+.+.+++..++++.++|.+.||.|+||+|+++|.+|+||.+ ||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~-~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLE-LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCC-CEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5788 56999999999999999999 999999987777788999999999999999988999999999 9874
No 28
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.65 E-value=4.9e-16 Score=101.92 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=65.2
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhh
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWH 94 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~ 94 (224)
++||+ +.|+++++++++|+++|++ |+.+.++...+++..+++.+.||.|+||+|+++|.+|+||.| ||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~-~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIP-FEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCC-cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 46884 6999999999999999999 999999987777777889999999999999999999999999 998864
No 29
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.64 E-value=5.1e-16 Score=101.80 Aligned_cols=70 Identities=34% Similarity=0.552 Sum_probs=64.1
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHh
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAST 92 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~ 92 (224)
|+||+ ..||+|++++++|.++|++ |+.+.++...++++.++|.++||.|+||+|+++|.+|+||.+ ||++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD-YELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC-cEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhh
Confidence 78985 5899999999999999999 999999887666778899999999999999999999999999 9986
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.64 E-value=3.5e-16 Score=102.88 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=60.9
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEe--CCeeeeecHH---HHHhhh
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMED--GGDTLFNQGP---FASTWH 94 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~--~g~~l~eS~a---yL~~~~ 94 (224)
|++||+ +.||+|+|++++|.++||+ |+.+.++ .+++..+++.+.||.|+||+|++ +|.+|+||.+ ||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~-y~~~~v~--~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELD-VILYPCP--KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCc-EEEEECC--CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 478995 6999999999999999999 9998774 33445678999999999999985 4789999999 999864
No 31
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.63 E-value=4.4e-16 Score=101.86 Aligned_cols=70 Identities=27% Similarity=0.375 Sum_probs=63.3
Q ss_pred Ee-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCC
Q 048166 24 FI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHAST 97 (224)
Q Consensus 24 ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~ 97 (224)
|| +..||||+|+|++|.++||+ |+.+.++... +.+++.+.||.|+||+|+++|.+|+||.+ ||++++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~-~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP-YELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE-EEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCe-EEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 55 67999999999999999999 9999988553 47889999999999999999999999999 999998754
No 32
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.62 E-value=7.5e-16 Score=103.38 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhcCC
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHAST 97 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~~~ 97 (224)
..||||+|+|++|+++||+ |+.+.+++.+ +.++|.++||.|+||+|+++|.+|+||.+ ||+++++..
T Consensus 20 g~cpf~~rvrl~L~eKgi~-ye~~~vd~~~---~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVV-FNVTTVDMKR---KPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCc-eEEEEeCCCC---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 4799999999999999999 9999998765 46889999999999999999999999999 999988654
No 33
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.62 E-value=1.5e-15 Score=99.47 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=65.2
Q ss_pred eEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhhc
Q 048166 22 LKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWHA 95 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~~ 95 (224)
|+||+..++++++++++|+++|++ |+.+.++...++++.++|.+.||.|+||+|+++|.+|+||.+ ||++.++
T Consensus 1 ~~l~~~~~~~~~~v~~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPRSRSFRILWLLEELGLP-YELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCCCChHHHHHHHHHcCCC-cEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 478865567899999999999999 999999887666778999999999999999999999999999 9998763
No 34
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=1.2e-15 Score=99.10 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=62.7
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHH
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAS 91 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~ 91 (224)
++|| ++.||+|++++++|.++|++ |+.+.+++..++++.++|.+.||.|++|+|+++|.+|+||.+ ||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIP-YEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC-cEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5787 56999999999999999999 999999887777788999999999999999998999999999 773
No 35
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.61 E-value=1.5e-15 Score=99.81 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=64.3
Q ss_pred eEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeC-CeeeeecHH---HHHhhhc
Q 048166 22 LKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDG-GDTLFNQGP---FASTWHA 95 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~-g~~l~eS~a---yL~~~~~ 95 (224)
|+||+..++++++|+++|.++|++ |+.+.++...++++.++|.++||.|+||+|+++ |.+|+||.+ ||++.++
T Consensus 1 ~~Ly~~~~~~~~~v~~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGACSLAPHIALEELGLP-FELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCCchHHHHHHHHHcCCC-ceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 578855445799999999999999 999999988777788999999999999999965 899999999 9998764
No 36
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.61 E-value=1.4e-15 Score=98.88 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=61.7
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAS 91 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~ 91 (224)
|+||+ ..||++++++++|+++|++ |+.+.++...++++.++|.++||.|+||+|+++|.+|+||.+ ||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~-~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLP-YERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCC-CEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 46874 6999999999999999999 999988866566678899999999999999999999999999 874
No 37
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.60 E-value=2.4e-15 Score=97.74 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=61.6
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhhh
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTWH 94 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~~ 94 (224)
|+|| .+.||+|++++++|+++|++ |+.+.++.. ++.++|.+.||.|+||+|+++|..|+||.+ ||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~-~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVS-VEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCc-cEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5788 46999999999999999999 999988754 456889999999999999999999999999 999864
No 38
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.60 E-value=2.8e-15 Score=97.77 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=61.0
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCC-CccceEEeCCeeeeecHH---HHHhhh
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPF-GLMLAMEDGGDTLFNQGP---FASTWH 94 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~-g~vP~L~~~g~~l~eS~a---yL~~~~ 94 (224)
|+||+ ..||+|+|++++|+++|++ |+.+.++.. ++.++|.+.||. |+||+|+++|.+|+||.+ ||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~-~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVP-YEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCC-CEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 57884 5999999999999999999 999987764 467889999995 999999998999999999 998753
No 39
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.59 E-value=2.1e-15 Score=98.10 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=61.7
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FAS 91 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~ 91 (224)
|+||+ +.||+|+|++++|.++|++ |+.+.++...++++.++|.+.||.|+||+|+ ++|..|+||.+ ||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~-~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGID-VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCC-ceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 57885 5899999999999999999 9999998876666778899999999999998 67889999999 874
No 40
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.59 E-value=3.8e-15 Score=96.74 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=63.1
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHH
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAS 91 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~ 91 (224)
|+|| +..|+++++++++|+++|++ |+.+.+++..++++.++|.+.||.|++|+|+++|.+|+||.+ ||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~-~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLD-YEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCC-CeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5788 56999999999999999999 999999987777778899999999999999999999999999 874
No 41
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.58 E-value=1.2e-14 Score=103.20 Aligned_cols=84 Identities=51% Similarity=0.783 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhh
Q 048166 139 GLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~ 218 (224)
+...+++..+...+++.+.++.||++|++++|++|+++|+|||++++.+.++...+.....+++|+|.+|++++.++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 114 (118)
T cd03187 35 GLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDISARPAW 114 (118)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHHHhCHHH
Confidence 33456777788889999999999999999999999999999999999988876433223357899999999999999999
Q ss_pred hhhc
Q 048166 219 LKLQ 222 (224)
Q Consensus 219 ~~~~ 222 (224)
++++
T Consensus 115 ~~~~ 118 (118)
T cd03187 115 KKVL 118 (118)
T ss_pred HhhC
Confidence 9864
No 42
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.57 E-value=6.4e-15 Score=96.32 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=60.9
Q ss_pred EEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEe-CCeeeeecHH---HHHh
Q 048166 23 KFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMED-GGDTLFNQGP---FAST 92 (224)
Q Consensus 23 ~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~-~g~~l~eS~a---yL~~ 92 (224)
+|| +..||++++++++|+++|++ |+.+.++...+ ++.++|.++||.|++|+|++ +|.+|+||.+ ||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~-~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLD-VEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCc-eEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 577 56899999999999999999 99999997654 67889999999999999995 6899999999 9975
No 43
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.57 E-value=6.1e-15 Score=96.66 Aligned_cols=69 Identities=28% Similarity=0.437 Sum_probs=59.7
Q ss_pred eEEecCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCC-CccceEEeC-CeeeeecHH---HHHh
Q 048166 22 LKFIARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPF-GLMLAMEDG-GDTLFNQGP---FAST 92 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~-g~vP~L~~~-g~~l~eS~a---yL~~ 92 (224)
+++| +.++++.++|++|+++|++ |+.+.+++..++++.++|.+.||. |+||+|+++ |.+|+||.| ||++
T Consensus 3 l~l~-~~~~~~~~~r~~l~~~gv~-~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLY-NGRGRSERIRLLLAEKGVE-YEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEE-SSSTTTHHHHHHHHHTT---EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEE-CCCCchHHHHHHHHHhccc-CceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3444 4444999999999999999 999999998888888999999999 999999988 999999999 9975
No 44
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.8e-14 Score=111.52 Aligned_cols=196 Identities=18% Similarity=0.181 Sum_probs=128.9
Q ss_pred CCCCCceEEec-CCCchHHHHHHHHHhCCCCc---ccccccccC-CCCCCCcc------------------hhhcCCC--
Q 048166 16 QTLPTSLKFIA-RHHPAAQHECCSAYEKDIDE---YELPPVDIV-NGAHMHQP------------------YLSLNPF-- 70 (224)
Q Consensus 16 ~~~~~~~~ly~-~~sp~~~~v~~~L~~~gi~~---~~~~~v~~~-~~~~~~~~------------------~~~~np~-- 70 (224)
+.....+.||. ..|||++|..+.-.++|++. ..++...+. +|....++ |....|.
T Consensus 46 ~~e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~Ys 125 (324)
T COG0435 46 KAEKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYS 125 (324)
T ss_pred CCCCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCC
Confidence 44567899995 59999999999999999974 222222221 12111111 2222442
Q ss_pred C--ccceEEeC--C-eeeeecHH---HHHh----hhcCCCCCCCCCcCCccccchheeeccccChhHHHHHHHHHhccCC
Q 048166 71 G--LMLAMEDG--G-DTLFNQGP---FAST----WHASTGKEEPICCGLVASKESAIIEMHQFDGPIRSIIRQLILHPLR 138 (224)
Q Consensus 71 g--~vP~L~~~--g-~~l~eS~a---yL~~----~~~~~~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (224)
| +||+|.|. . .+-.||.. .+.. ..++. ..|+| ..... ++..+...+...+...+.+.
T Consensus 126 gRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~---~dlyP--~~Lr~----eId~~n~~Iy~~vNNGVYk~-- 194 (324)
T COG0435 126 GRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASA---VDLYP--EALRT----EIDELNKWIYDTVNNGVYKA-- 194 (324)
T ss_pred CceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhc---cccCC--HHHHH----HHHHHHhhhcccccCceeee--
Confidence 3 68999863 3 34467766 3333 22222 37888 33222 22222222222222222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCc------ccccCCCChhHHHHHHHh
Q 048166 139 GLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTP------KAAAVTPRPCANAWWNDI 212 (224)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~------~~~~~~~~p~l~~w~~r~ 212 (224)
|....+++-++..+.+.+.|+.||+.|+++.|++||++|.||+-+++.|.++..+- +..-+.+||+|..|+..+
T Consensus 195 GFA~tq~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~L 274 (324)
T COG0435 195 GFATTQEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDL 274 (324)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999998886431 233356699999999999
Q ss_pred hhchhhhhhc
Q 048166 213 ASGMQLLKLQ 222 (224)
Q Consensus 213 ~~~p~~~~~~ 222 (224)
.+.|+|.++.
T Consensus 275 Yq~pg~~~T~ 284 (324)
T COG0435 275 YQLPGFAETV 284 (324)
T ss_pred hcCccccccc
Confidence 9999998874
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.55 E-value=1.9e-14 Score=97.21 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=67.5
Q ss_pred ccccccccCCCCCCceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeC-Ceeee
Q 048166 7 NFLADIVRNQTLPTSLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDG-GDTLF 84 (224)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~-g~~l~ 84 (224)
+..+.-+.....+.+++|| ...||+|++++++|.++|++ |+.+.++... ..+++.+.||.|+||+|+++ |.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~-~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~ 79 (89)
T cd03055 4 HLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIP-HEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVY 79 (89)
T ss_pred ccccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCC-CeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEE
Confidence 3445555555667889999 46999999999999999999 9999887653 34678999999999999965 89999
Q ss_pred ecHH---HHH
Q 048166 85 NQGP---FAS 91 (224)
Q Consensus 85 eS~a---yL~ 91 (224)
||.+ ||+
T Consensus 80 eS~aI~~yLe 89 (89)
T cd03055 80 ESLIICEYLD 89 (89)
T ss_pred CHHHHHHhhC
Confidence 9999 874
No 46
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.54 E-value=8.5e-15 Score=94.40 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=54.7
Q ss_pred CCchHHHHHHHHHhCCCCccccccccc-CCCCCCCcchhhcCCCCccceEEe-CCeeeeecHH---HHHh
Q 048166 28 HHPAAQHECCSAYEKDIDEYELPPVDI-VNGAHMHQPYLSLNPFGLMLAMED-GGDTLFNQGP---FAST 92 (224)
Q Consensus 28 ~sp~~~~v~~~L~~~gi~~~~~~~v~~-~~~~~~~~~~~~~np~g~vP~L~~-~g~~l~eS~a---yL~~ 92 (224)
.|||++|++++|+++|++ |+...+.. ..+..+.++|.+.||.|+||+|++ +|.+++||.+ ||++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~-~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLP-YEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGT-CEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCC-CEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 599999999999999999 99988844 334556789999999999999995 7999999999 9986
No 47
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.54 E-value=5.3e-14 Score=110.19 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=110.9
Q ss_pred CCCceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH-------H
Q 048166 18 LPTSLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP-------F 89 (224)
Q Consensus 18 ~~~~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a-------y 89 (224)
.+..+.|| +..||||.|||.+|.+.||+ |++++|+.... .+. +-+-+.+||+|..+|+.+.||++ |
T Consensus 87 s~L~l~LyQyetCPFCcKVrAFLDyhgis-Y~VVEVnpV~r----~eI-k~SsykKVPil~~~Geqm~dSsvIIs~laTy 160 (370)
T KOG3029|consen 87 SPLDLVLYQYETCPFCCKVRAFLDYHGIS-YAVVEVNPVLR----QEI-KWSSYKKVPILLIRGEQMVDSSVIISLLATY 160 (370)
T ss_pred CCceEEEEeeccCchHHHHHHHHhhcCCc-eEEEEecchhh----hhc-cccccccccEEEeccceechhHHHHHHHHHH
Confidence 34568889 56999999999999999999 99999986542 222 33567899999977888999998 6
Q ss_pred HHhhhcCCCCCCCCCcC-C---ccccchhee---------------------eccccChhHHHHHHHHHh----------
Q 048166 90 ASTWHASTGKEEPICCG-L---VASKESAII---------------------EMHQFDGPIRSIIRQLIL---------- 134 (224)
Q Consensus 90 L~~~~~~~~~~~~L~p~-~---~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~---------- 134 (224)
|...-.+.+.=-.+||. + .+..+...+ +-..+..+..+.+-+.+.
T Consensus 161 Lq~~~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~Es 240 (370)
T KOG3029|consen 161 LQDKRQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGES 240 (370)
T ss_pred hccCCCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhH
Confidence 52211100000012331 0 000000000 000000000000000000
Q ss_pred ---------ccC----CCC--------------------CCCHHHHHHHHHHHHHHHHHHHHHh-cCCceeecCCCchhh
Q 048166 135 ---------HPL----RGL--------------------VPDEKITEAEMEKLGKVLDVCEERL-SKSKYLAGDDCTMAD 180 (224)
Q Consensus 135 ---------~~~----~~~--------------------~~~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~AD 180 (224)
... |+. -.....+...++.+.++++.+-..+ .+++|+.|++|++||
T Consensus 241 letFewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaD 320 (370)
T KOG3029|consen 241 LETFEWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLAD 320 (370)
T ss_pred HHHHHHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhh
Confidence 000 000 0001112234445555555555556 458999999999999
Q ss_pred hhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhc
Q 048166 181 MQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASG 215 (224)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~ 215 (224)
+.+|+.+..+.++.-..+.-+...|..||-+|++.
T Consensus 321 LsvfGvl~sm~gc~afkd~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 321 LSVFGVLRSMEGCQAFKDCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhhhhhhHhhhhhHHHHHHhcchHHHHHHHHHHH
Confidence 99999999998765344556678999999999863
No 48
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.53 E-value=1.2e-14 Score=94.52 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=59.0
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHh
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAST 92 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~ 92 (224)
++||+ ..|++++++|++|.++|++ |+.+.++.. +..+++...||.|+||+|+++|.+|+||.+ ||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~-~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGIS-WEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCC-CEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 68874 5899999999999999999 999988763 234578899999999999999999999999 9975
No 49
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.53 E-value=4e-14 Score=102.06 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC----------------CceeecCCCchhhhhhHhHHHHhhhC----cccccCCCC
Q 048166 143 DEKITEAEMEKLGKVLDVCEERLSK----------------SKYLAGDDCTMADMQYIPCLVYFMRT----PKAAAVTPR 202 (224)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~AD~~~~~~l~~~~~~----~~~~~~~~~ 202 (224)
+++..+...+++.+.|+.||++|++ ++|++|+++|+|||++++.+.++... .+....+.+
T Consensus 23 ~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~ 102 (134)
T cd03198 23 NPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADL 102 (134)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 4667788889999999999999986 78999999999999999999877532 123335889
Q ss_pred hhHHHHHHHhhhchhhhhhccC
Q 048166 203 PCANAWWNDIASGMQLLKLQKA 224 (224)
Q Consensus 203 p~l~~w~~r~~~~p~~~~~~~~ 224 (224)
|+|.+|++|+.+||+|++++|+
T Consensus 103 P~L~aw~~ri~aRPsfk~t~~~ 124 (134)
T cd03198 103 TGLWRYLKNAYQREEFTNTCPA 124 (134)
T ss_pred HHHHHHHHHHHCCHHHHHHcCC
Confidence 9999999999999999999884
No 50
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.53 E-value=2.5e-14 Score=92.47 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=55.5
Q ss_pred EEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEe-CCeeeeecHH
Q 048166 23 KFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMED-GGDTLFNQGP 88 (224)
Q Consensus 23 ~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~-~g~~l~eS~a 88 (224)
+|| +.+||||+|++++|.++|++ |+.+.++... +.++|.++||.|+||+|++ ||..|+||.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~-~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~a 65 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT-VELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLD 65 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC-cEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHH
Confidence 577 56999999999999999999 9999988753 4578999999999999996 5999999999
No 51
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.50 E-value=3e-14 Score=92.33 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=58.4
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHh
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAST 92 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~ 92 (224)
++|| +..|++|+++|++|+++|++ |+.+.++...+ ..++|.+.||.|+||+|+++|.+|+||.+ ||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~-~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVE-YEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCC-cEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 4787 56899999999999999999 99998876533 23458889999999999999999999999 8863
No 52
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=5.8e-14 Score=99.48 Aligned_cols=77 Identities=25% Similarity=0.345 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCc-ccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 146 ITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTP-KAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 146 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
..+...+++.+.++.||++|++++|++||++|+||+++++.+.++.... .....+++|+|.+|++++.++|+|++++
T Consensus 38 ~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 38 SEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 4677888999999999999999999999999999999998887665321 1223589999999999999999999875
No 53
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.50 E-value=4.3e-14 Score=94.46 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=58.5
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeC-CeeeeecHH---HHHhhhc
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDG-GDTLFNQGP---FASTWHA 95 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~-g~~l~eS~a---yL~~~~~ 95 (224)
.+||+|+|+|++|.++|++ |+.+.++.....+..+++ +.||.|+||+|+++ |.+|+||.+ ||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~-~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLE-YKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCC-CeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5899999999999999999 999998876554444555 88999999999987 899999999 9998764
No 54
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.49 E-value=1.3e-13 Score=94.01 Aligned_cols=72 Identities=28% Similarity=0.477 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccC-CCChhHHHHHHHhhhch
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAV-TPRPCANAWWNDIASGM 216 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~-~~~p~l~~w~~r~~~~p 216 (224)
++..+...+++.+.++.+|+.|++++|++||++|+||+++++.+.++.... .... +++|+|.+|++|+.+||
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~-~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG-PDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT-TTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC-CCcccccCHHHHHHHHHHHcCC
Confidence 557888899999999999999999999999999999999999999998764 3334 99999999999999998
No 55
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.48 E-value=1.5e-13 Score=96.85 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
+...+...+++.+.++.||++|++++|++|+++|+|||++++.+.++...+ ...+++|+|.+|++++.++|+|++++
T Consensus 38 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 38 EEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWAPGVG--LDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHHhhcC--CChhhChHHHHHHHHHHhCHHhHhhC
Confidence 455677888999999999999998999999999999999999988776542 23568999999999999999999874
No 56
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.48 E-value=7.3e-14 Score=90.77 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=57.7
Q ss_pred eEEe-cCCCchHHHHHHHHHh--CCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHH
Q 048166 22 LKFI-ARHHPAAQHECCSAYE--KDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FAS 91 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~--~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~ 91 (224)
|+|| +..||+|+|+|++|.+ +|++ |+.+.++.. ++.++|.+.||.|+||+|+ ++|..|+||.+ ||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~-~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDD-VELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCC-cEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 5788 5699999999999999 8999 999988743 3568899999999999998 68899999999 874
No 57
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.48 E-value=1.2e-13 Score=90.30 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=55.2
Q ss_pred ceEEec-C-------CCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---H
Q 048166 21 SLKFIA-R-------HHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---F 89 (224)
Q Consensus 21 ~~~ly~-~-------~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---y 89 (224)
|++||. . .||+|+|++++|+++|++ |+.+.++. .+.||.|+||+|+++|.+|+||.+ |
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~-~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~y 69 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIP-YENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDH 69 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCC-cEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHH
Confidence 367773 2 689999999999999999 99987753 258999999999999999999999 9
Q ss_pred HHhhhc
Q 048166 90 ASTWHA 95 (224)
Q Consensus 90 L~~~~~ 95 (224)
|+++++
T Consensus 70 L~~~~~ 75 (75)
T cd03080 70 LEEKYG 75 (75)
T ss_pred HHHHcC
Confidence 999863
No 58
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.48 E-value=1.1e-13 Score=92.08 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=58.5
Q ss_pred EE-ecCCCchHHHHHHHHHhCCCCcccccccccCCCCCC-Ccchhh-----cCCCCccceEEeCCeeeeecHH---HHHh
Q 048166 23 KF-IARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHM-HQPYLS-----LNPFGLMLAMEDGGDTLFNQGP---FAST 92 (224)
Q Consensus 23 ~l-y~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~-~~~~~~-----~np~g~vP~L~~~g~~l~eS~a---yL~~ 92 (224)
+| |+..++.|++++++|.++|++ |+.+.+++..+++. .+++.+ .+|.|+||+|+++|.+|+||.| ||++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~-~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEK-YEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCC-cEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 45 467899999999999999999 99999998765543 244542 2399999999999999999999 9987
Q ss_pred hh
Q 048166 93 WH 94 (224)
Q Consensus 93 ~~ 94 (224)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 53
No 59
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.47 E-value=6.4e-14 Score=90.55 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=54.6
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeC-CeeeeecHH---HHHh
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDG-GDTLFNQGP---FAST 92 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~-g~~l~eS~a---yL~~ 92 (224)
|+|| +..||||+|+|++|.++|++ |+.+.++... .....+.||.|+||+|+++ |..|+||.+ ||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~-~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIP-VEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCC-eEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5688 46999999999999999999 9998776321 2234578999999999964 899999999 9874
No 60
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.46 E-value=3.4e-13 Score=94.16 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
++..+...+.+.+.++.||++|++++|++|+++|+|||++++.+.++...+ ......+|++.+|++++.+||+|++++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~rpa~~~~~ 107 (107)
T cd03186 30 KKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPALG-IELPKQAKPLKDYMERVFARDSFQKSL 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHHcC-CCCcccchHHHHHHHHHHCCHHHHHhC
Confidence 455677888999999999999999999999999999999999986655333 223358999999999999999999863
No 61
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.45 E-value=1.8e-13 Score=88.90 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHH
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAS 91 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~ 91 (224)
..||++++++++|+++|++ |+.+.++...+ .+.++|.+.||.|+||+|+++|.+|+||.+ ||+
T Consensus 8 ~~s~~s~~v~~~L~~~gl~-~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIP-FEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCHHHHHHHHHHHHcCCC-CEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999 99999987653 356889999999999999999999999999 874
No 62
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.45 E-value=4.1e-13 Score=86.21 Aligned_cols=68 Identities=24% Similarity=0.375 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCc-ccccCCCChhHHHHHHH
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTP-KAAAVTPRPCANAWWND 211 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~r 211 (224)
+.+.+..++++.+.++.||++|++++|++|+++|+||+++++.+.++.... ...+.+.+|+|.+|++|
T Consensus 1 ~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 1 PAAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 356788999999999999999999999999999999999999999998875 23456999999999987
No 63
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.44 E-value=4.8e-13 Score=93.50 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCC----------ceeecCCCchhhhhhHhHHHHhhhCccccc---CCCChhHHH
Q 048166 141 VPDEKITEAEMEKLGKVLDVCEERLSKS----------KYLAGDDCTMADMQYIPCLVYFMRTPKAAA---VTPRPCANA 207 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~---~~~~p~l~~ 207 (224)
..|.++.+....++.+.++.||++|.++ +|++|+++|+|||++++.+.++...+.... ...+|+|.+
T Consensus 21 ~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~ 100 (111)
T cd03204 21 HDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEA 100 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHH
Confidence 4567888999999999999999999765 599999999999999999998876431111 368999999
Q ss_pred HHHHhhhchhh
Q 048166 208 WWNDIASGMQL 218 (224)
Q Consensus 208 w~~r~~~~p~~ 218 (224)
|++|+.+||+|
T Consensus 101 w~~rv~aRpsf 111 (111)
T cd03204 101 YFERVLQRESF 111 (111)
T ss_pred HHHHHHcCCCC
Confidence 99999999986
No 64
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.44 E-value=8e-13 Score=95.02 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-hcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhh--chh
Q 048166 141 VPDEKITEAEMEKLGKVLDVCEER-LSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIAS--GMQ 217 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~le~~-L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~--~p~ 217 (224)
..+++..+...+++.+.++.+|++ +++++|++||++|+||+++++.+.+..... ....+++|+|.+|++++.+ ||+
T Consensus 37 ~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~p~ 115 (126)
T cd03183 37 PVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAG-YDVFEGRPKLAAWRKRVKEAGNPL 115 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcC-CcccccCchHHHHHHHHHHhcchh
Confidence 345777888899999999999997 455789999999999999998887776543 3336899999999999999 999
Q ss_pred hhhhcc
Q 048166 218 LLKLQK 223 (224)
Q Consensus 218 ~~~~~~ 223 (224)
|++++.
T Consensus 116 ~~~~~~ 121 (126)
T cd03183 116 FDEAHK 121 (126)
T ss_pred HHHHHH
Confidence 998764
No 65
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.44 E-value=6.2e-13 Score=93.65 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhh
Q 048166 142 PDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKL 221 (224)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~ 221 (224)
.++...+...+++.+.++.+|+.|++++|++|+++|+|||++++.+.+..... ....+.+|++.+|++++.++|+|+++
T Consensus 33 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~ 111 (113)
T cd03178 33 KIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLEWIG-IDDLDDFPNVKRWLDRIAARPAVQRG 111 (113)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHHhcc-ccchhhchHHHHHHHHHhhCHHHHHh
Confidence 34566778889999999999999998999999999999999999998886553 22367899999999999999999987
Q ss_pred c
Q 048166 222 Q 222 (224)
Q Consensus 222 ~ 222 (224)
+
T Consensus 112 ~ 112 (113)
T cd03178 112 L 112 (113)
T ss_pred c
Confidence 5
No 66
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.44 E-value=5e-13 Score=95.50 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+...+...+.+.+.++.||++|++++|++|+++|+||+++++.+.++.... ....+.+|+|.+|++|+.++|+++++++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~-~~~~~~~P~l~~~~~rv~~~p~vk~~~~ 108 (121)
T cd03209 30 EKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFE-PDCLDAFPNLKDFLERFEALPKISAYMK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhC-ccccccChHHHHHHHHHHHCHHHHHHHh
Confidence 455667788899999999999998899999999999999999988887542 2346889999999999999999998865
No 67
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.43 E-value=4.8e-13 Score=98.31 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhC-----c-ccccCCCChhHHHHHHHhhhc
Q 048166 142 PDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRT-----P-KAAAVTPRPCANAWWNDIASG 215 (224)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~-----~-~~~~~~~~p~l~~w~~r~~~~ 215 (224)
.+++..+...+++.+.++.||++|++++|++|+++|+||+++++.+.++... . +....+.+|+|.+|+++|.++
T Consensus 30 ~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~ 109 (142)
T cd03190 30 TTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQN 109 (142)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcC
Confidence 4567778888999999999999999899999999999999999998876431 1 112356899999999999999
Q ss_pred hhhhhhcc
Q 048166 216 MQLLKLQK 223 (224)
Q Consensus 216 p~~~~~~~ 223 (224)
|+++++++
T Consensus 110 P~~k~~~~ 117 (142)
T cd03190 110 PGVAETTN 117 (142)
T ss_pred chHhhhcC
Confidence 99999875
No 68
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=1.9e-12 Score=90.60 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhh
Q 048166 142 PDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~ 218 (224)
.++...+...+++.+.++.||++|++++|++|+++|+||+++++++..+.... ...+++|+|.+|++++.++|+|
T Consensus 36 ~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 36 RDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWFELP--IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHHHcc--cccccCchHHHHHHHHHhCCCC
Confidence 34566778889999999999999998999999999999999998886554432 2468899999999999999986
No 69
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.41 E-value=6.8e-13 Score=91.98 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 146 ITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 146 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
..+...+++.+.++.||++|++++|++||++|+|||++++.+.++...+ ..+.+|+|.+|++++.++|+|++++.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~ 101 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPAFQRAAA 101 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHHHHHHhc
Confidence 4566778899999999999999999999999999999999998887642 35789999999999999999998763
No 70
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.41 E-value=3.2e-13 Score=88.67 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=56.4
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeC----CeeeeecHH---HHHh
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDG----GDTLFNQGP---FAST 92 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~----g~~l~eS~a---yL~~ 92 (224)
.++||+ ..||||+|++++|.++|++ |+.+.++... ..+ ...||.++||+|+++ |.+|+||.+ ||++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~-y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~ 74 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIP-YEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKT 74 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCc-eEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHH
Confidence 378885 6999999999999999999 9998876432 223 357999999999954 789999999 9998
Q ss_pred hh
Q 048166 93 WH 94 (224)
Q Consensus 93 ~~ 94 (224)
..
T Consensus 75 ~~ 76 (77)
T cd03040 75 YL 76 (77)
T ss_pred Hc
Confidence 64
No 71
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.39 E-value=2e-12 Score=92.30 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 145 KITEAEMEKLGKVLDVCEERLS--KSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 145 ~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
...+...+.+.+.++.||++|+ +++|++|+++|+|||++++.+.+....+ .....+|+|.+|++++.++|+|++++
T Consensus 40 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~ 117 (121)
T cd03191 40 AKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARRFG--VDLSPYPTIARINEACLELPAFQAAH 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHHhC--CCcccCcHHHHHHHHHHhChhHHHhC
Confidence 3344556778999999999997 4579999999999999999988765442 22588999999999999999999988
Q ss_pred cC
Q 048166 223 KA 224 (224)
Q Consensus 223 ~~ 224 (224)
+.
T Consensus 118 ~~ 119 (121)
T cd03191 118 PD 119 (121)
T ss_pred cC
Confidence 63
No 72
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.39 E-value=6e-13 Score=95.49 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CceeecCCCchhhhhhHhHHHHhhhCcc----cccCCCChhHHHHHHHhhhchhh
Q 048166 145 KITEAEMEKLGKVLDVCEERLSK--SKYLAGDDCTMADMQYIPCLVYFMRTPK----AAAVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 145 ~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~AD~~~~~~l~~~~~~~~----~~~~~~~p~l~~w~~r~~~~p~~ 218 (224)
+..+...+.+.+.++.||+.|++ ++|++|+++|+||+++++++.++..... ....+.+|+|.+|+++|.++|++
T Consensus 28 ~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v 107 (124)
T cd03184 28 SDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAV 107 (124)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHH
Confidence 34557788999999999999985 8999999999999999999987764321 13468899999999999999999
Q ss_pred hhhcc
Q 048166 219 LKLQK 223 (224)
Q Consensus 219 ~~~~~ 223 (224)
+++++
T Consensus 108 ~~~~~ 112 (124)
T cd03184 108 QAFYT 112 (124)
T ss_pred HHHhC
Confidence 99876
No 73
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.39 E-value=2e-12 Score=91.55 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhh
Q 048166 142 PDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~ 218 (224)
.++.+.+....++.+.++.||++|++++|++||++|+|||++++.+.++...+ ..+...+|+|.+|++++.++|++
T Consensus 42 ~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aDi~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 42 QVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIADITAFVGLDFAKVVK-LRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHhHHHHhcC-CCCccccHHHHHHHHHHHhccCC
Confidence 45677889999999999999999998899999999999999999998876543 33346899999999999999974
No 74
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.38 E-value=1.6e-12 Score=93.29 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhC---cccc--cCCCChhHHHHHHHhhhchhh
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRT---PKAA--AVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~---~~~~--~~~~~p~l~~w~~r~~~~p~~ 218 (224)
+...+....++.+.++.||++|++++|++|+++|+||+++++.+.++... .+.. ..+.+|++.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 109 (126)
T cd03185 30 GEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAV 109 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHH
Confidence 44556778899999999999999899999999999999999998887532 1122 357799999999999999999
Q ss_pred hhhccC
Q 048166 219 LKLQKA 224 (224)
Q Consensus 219 ~~~~~~ 224 (224)
+++++.
T Consensus 110 ~~~~~~ 115 (126)
T cd03185 110 KEVLPD 115 (126)
T ss_pred HHhCCC
Confidence 998763
No 75
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.38 E-value=1.6e-12 Score=92.83 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CceeecCCCchhhhhhHhHHHHhhhC-c---ccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 148 EAEMEKLGKVLDVCEERLSK-SKYLAGDDCTMADMQYIPCLVYFMRT-P---KAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 148 ~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~AD~~~~~~l~~~~~~-~---~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
+...+.+.+.+..||++|++ ++|++||++|+||+++++.+.++... . +....+.+|+|.+|++++.+||+|++++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 45567799999999999985 79999999999999999987666432 1 2223489999999999999999999988
Q ss_pred c
Q 048166 223 K 223 (224)
Q Consensus 223 ~ 223 (224)
+
T Consensus 109 ~ 109 (121)
T cd03201 109 A 109 (121)
T ss_pred C
Confidence 6
No 76
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.38 E-value=1.3e-12 Score=86.27 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=55.3
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhc-----CCCCccceEEeCCeeeeecHH---HHHh
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSL-----NPFGLMLAMEDGGDTLFNQGP---FAST 92 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~-----np~g~vP~L~~~g~~l~eS~a---yL~~ 92 (224)
++|| ++.|+.+++++++|+++|++ |+.+.++... ++.+. +|.|+||+|+++|.+|+||.| ||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~-~e~~~v~~~~------~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVE-FEEKFIESAE------DLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCC-cEEEEeccHH------HHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 4676 56889999999999999999 9999887532 22222 368999999999999999999 9999
Q ss_pred hhc
Q 048166 93 WHA 95 (224)
Q Consensus 93 ~~~ 95 (224)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 874
No 77
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.38 E-value=2e-12 Score=93.07 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhh
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSK---SKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLK 220 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~ 220 (224)
+...+...+.+.+.+..||++|++ ++|++|+++|+||+++++.+.++.... ....+.+|+|.+|++|+.++|+|++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~-~~~~~~~P~l~~~~~rv~~~p~v~~ 108 (126)
T cd03210 30 EAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLA-PGCLDAFPLLKAFVERLSARPKLKA 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhC-hHhhhcChHHHHHHHHHHhCcHHHH
Confidence 344556677789999999999974 589999999999999999988876432 2346899999999999999999998
Q ss_pred hcc
Q 048166 221 LQK 223 (224)
Q Consensus 221 ~~~ 223 (224)
+++
T Consensus 109 ~~~ 111 (126)
T cd03210 109 YLE 111 (126)
T ss_pred HHh
Confidence 865
No 78
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.37 E-value=2e-12 Score=91.90 Aligned_cols=71 Identities=25% Similarity=0.265 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhch
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGM 216 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p 216 (224)
+...+....++.+.++.||++|++++|++||++|+|||++++.+.+..... . ....+|+|.+|++++.++|
T Consensus 49 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~-~-~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 49 KVLAGFINPELKKHLDFLEDRLAKKGYFVGDKLTAADIMMSFPLEAALARG-P-LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHHHcC-c-ccccCchHHHHHHHHhcCC
Confidence 455667778899999999999999999999999999999998888876543 2 4688999999999999986
No 79
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.2e-11 Score=90.94 Aligned_cols=182 Identities=10% Similarity=0.082 Sum_probs=115.2
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHHhhhcC
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FASTWHAS 96 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~~~~~~ 96 (224)
|+|| +..||||.|+|+...++||| ++.....-.+ ++ ++ ..+-...+||+|+ +||..+.||.. |+.+..++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nip-ve~~vL~nDD-e~-Tp--~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~ 75 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIP-VELHVLLNDD-EE-TP--IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGK 75 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCC-hhhheeccCc-cc-Ch--hhhhcccccceEEccccccchhhhHHHHHHHHhcCc
Confidence 6798 77999999999999999999 9887665332 11 11 2344567899998 89999999999 99998875
Q ss_pred CCCCCCCCcCCccccchheeeccccChhHHHHHHHHHhccCCCC-----------------CCC-H---HHHHHHHHHHH
Q 048166 97 TGKEEPICCGLVASKESAIIEMHQFDGPIRSIIRQLILHPLRGL-----------------VPD-E---KITEAEMEKLG 155 (224)
Q Consensus 97 ~~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~---~~~~~~~~~~~ 155 (224)
. -+-++ ..|...+.. .........+.+.++.+.-+.+ ..+ + .-.....+++.
T Consensus 76 ~----~lt~~-~~pai~~wl--rkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~ 148 (215)
T COG2999 76 P----LLTGK-VRPAIEAWL--RKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQ 148 (215)
T ss_pred h----hhccC-cCHHHHHHH--HHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHH
Confidence 3 23221 222222211 0111112222222222221110 000 0 11245556777
Q ss_pred HHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhh
Q 048166 156 KVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLL 219 (224)
Q Consensus 156 ~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~ 219 (224)
..++.|+..+.+.. -+...+++-|+.+|+.+..+..+++..+. .++..|..+|.+...+.
T Consensus 149 ~dl~~l~~Li~~~s-~~n~~l~~ddi~vFplLRnlt~v~gi~wp---s~v~dy~~~msektqV~ 208 (215)
T COG2999 149 ADLRALDKLIVGPS-AVNGELSEDDILVFPLLRNLTLVAGIQWP---SRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHHHHHHHhcCcc-hhccccchhhhhhhHHhccceecccCCCc---HHHHHHHHHHHHhhCcc
Confidence 88888888776644 33445999999999999998876544322 37999999999876653
No 80
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.36 E-value=1.9e-12 Score=92.01 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 146 ITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 146 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
..+...+++.+.++.||++|++++|++|+++|+||+++++++.++.... ......+|+|.+|+++|.++|+|++..
T Consensus 35 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 35 PPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEALL-PLDLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHHhc-CCChhhCchHHHHHHHHHcccchHHHH
Confidence 3456677899999999999988899999999999999999998886511 222567999999999999999999764
No 81
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.35 E-value=3.8e-12 Score=92.89 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhcc
Q 048166 148 EAEMEKLGKVLDVCEERLS--KSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQK 223 (224)
Q Consensus 148 ~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~ 223 (224)
+...+.+.+.++.||+.|+ +++|++|+++|+||+++++.+.++.... ......+|+|.+|++|+.++|++++.+.
T Consensus 38 ~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~-~~~l~~~P~l~~~~~rv~~~P~vk~~~~ 114 (137)
T cd03208 38 LIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELD-PSLLSDFPLLQAFKTRISNLPTIKKFLQ 114 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhc-hhhhccChHHHHHHHHHHcCHHHHHHHh
Confidence 4444467899999999998 6789999999999999999998876532 3346899999999999999999998764
No 82
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.35 E-value=2.5e-12 Score=91.93 Aligned_cols=83 Identities=28% Similarity=0.370 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCc-ccccCCCChhHHHHHHHhhhchhhhh
Q 048166 142 PDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTP-KAAAVTPRPCANAWWNDIASGMQLLK 220 (224)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~r~~~~p~~~~ 220 (224)
.++...+...+++.+.++.||+.|++++|++|+++|+||+++++.+.+..... .......+|++.+|++++.++|+|++
T Consensus 33 ~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~ 112 (123)
T cd03181 33 YNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKA 112 (123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHH
Confidence 45567788899999999999999998999999999999999999998874321 12234789999999999999999999
Q ss_pred hccC
Q 048166 221 LQKA 224 (224)
Q Consensus 221 ~~~~ 224 (224)
+++.
T Consensus 113 ~~~~ 116 (123)
T cd03181 113 VFGE 116 (123)
T ss_pred HcCC
Confidence 8763
No 83
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.35 E-value=2e-12 Score=92.26 Aligned_cols=71 Identities=20% Similarity=0.362 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhc---CCceeecCCCchhhhhhHhHHHHhhh----CcccccCCCChhHHHHHHHhhhchhhhhhccC
Q 048166 153 KLGKVLDVCEERLS---KSKYLAGDDCTMADMQYIPCLVYFMR----TPKAAAVTPRPCANAWWNDIASGMQLLKLQKA 224 (224)
Q Consensus 153 ~~~~~l~~le~~L~---~~~~l~G~~~t~AD~~~~~~l~~~~~----~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 224 (224)
.+.+.++.||++|+ +++|++| ++|+|||++++.+.++.. ..+....+++|+|.+|+++|.++|+|+++.|.
T Consensus 34 ~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 34 EAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 34566777887776 4899999 999999999999876642 12233347899999999999999999999874
No 84
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.7e-12 Score=98.93 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=121.7
Q ss_pred CceEEe-cCCCchHHHHHHHHHhCCCCc---cccccccc-CCCCCCCc-------------------------c-hhhcC
Q 048166 20 TSLKFI-ARHHPAAQHECCSAYEKDIDE---YELPPVDI-VNGAHMHQ-------------------------P-YLSLN 68 (224)
Q Consensus 20 ~~~~ly-~~~sp~~~~v~~~L~~~gi~~---~~~~~v~~-~~~~~~~~-------------------------~-~~~~n 68 (224)
+.+.|| +..|||++|+.+.+.++|+.+ +..+..-+ ..|....+ + |...+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 578889 459999999999999999964 22221100 00110000 0 11123
Q ss_pred CC--C--ccceEEeC---CeeeeecHH---HHHh---hhcC-C-CCCCCCCcCCccccchheeeccccChhHHHHHHHHH
Q 048166 69 PF--G--LMLAMEDG---GDTLFNQGP---FAST---WHAS-T-GKEEPICCGLVASKESAIIEMHQFDGPIRSIIRQLI 133 (224)
Q Consensus 69 p~--g--~vP~L~~~---g~~l~eS~a---yL~~---~~~~-~-~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (224)
|. | +||+|-|. ..+-.||.. .+.. .+.+ . ...-.|+| ....+ . ...+..++..-+...+
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~--~--Ide~N~wvy~~INNGV 189 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRA--Q--IDETNSWVYDKINNGV 189 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHH--H--HhhhhceecccccCce
Confidence 32 2 59999863 455678877 5552 2211 0 00014566 32222 1 1222222222221122
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc--eeecCCCchhhhhhHhHHHHhhhC-------cccccCCCChh
Q 048166 134 LHPLRGLVPDEKITEAEMEKLGKVLDVCEERLSKSK--YLAGDDCTMADMQYIPCLVYFMRT-------PKAAAVTPRPC 204 (224)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~AD~~~~~~l~~~~~~-------~~~~~~~~~p~ 204 (224)
.+- |...++++-+...+++-+.|+.+|+.|+++. |++|+++|.||+.+++.+-++..+ .......+||+
T Consensus 190 Yk~--GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~ 267 (319)
T KOG2903|consen 190 YKC--GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPN 267 (319)
T ss_pred eee--ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcH
Confidence 222 4455678888889999999999999999865 999999999999999999887543 11233569999
Q ss_pred HHHHHHHhhh-chhhhhhc
Q 048166 205 ANAWWNDIAS-GMQLLKLQ 222 (224)
Q Consensus 205 l~~w~~r~~~-~p~~~~~~ 222 (224)
|..|+.++.. .|+|..+.
T Consensus 268 l~~~lk~iY~~~~~~~~Tt 286 (319)
T KOG2903|consen 268 LHNWLKNIYWNIPGFSSTT 286 (319)
T ss_pred HHHHHHHHHhhccchhhcc
Confidence 9999999998 89888764
No 85
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.33 E-value=5.3e-12 Score=87.06 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhh
Q 048166 146 ITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 146 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~ 218 (224)
..+....++.+.++.+|++|++++|++|+++|+||+++++.+.+.... ....+++|+|.+|++++.++|+|
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEG--GVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhcc--CCChhhCcHHHHHHHHHHhCcCC
Confidence 456778899999999999999999999999999999999888765432 22357899999999999999985
No 86
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.5e-11 Score=92.35 Aligned_cols=195 Identities=11% Similarity=0.086 Sum_probs=128.1
Q ss_pred cccccccCCCCCCceEEec---------CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEe
Q 048166 8 FLADIVRNQTLPTSLKFIA---------RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMED 78 (224)
Q Consensus 8 ~~~~~~~~~~~~~~~~ly~---------~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~ 78 (224)
+..++.+..++|..-+||. +....|..|..+|+++++| |.++.- .+.+| ++|.|+||.|..
T Consensus 4 ~~~~~~aae~WPedatL~qp~e~eQiLl~d~ascLAVqtfLrMcnLP-f~v~~~-------~Naef--mSP~G~vPllr~ 73 (257)
T KOG3027|consen 4 SAEEMNAAEPWPEDATLYQPYEAEQILLPDNASCLAVQTFLRMCNLP-FNVRQR-------ANAEF--MSPGGKVPLLRI 73 (257)
T ss_pred hhhhhhccCCCCccchhcCcccccccccccchhHHHHHHHHHHcCCC-ceeeec-------CCccc--cCCCCCCceeee
Confidence 4455666677777777774 4567899999999999999 977632 23445 799999999998
Q ss_pred CCeeeeecHH---HHHhhhcCCCCCCCCCcCCccccchheee--------ccccChhHHHHHHHHHhcc-----------
Q 048166 79 GGDTLFNQGP---FASTWHASTGKEEPICCGLVASKESAIIE--------MHQFDGPIRSIIRQLILHP----------- 136 (224)
Q Consensus 79 ~g~~l~eS~a---yL~~~~~~~~~~~~L~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----------- 136 (224)
+..+++|=.+ +.+.+-..-+ +...+++....|+.+. ..-+..+.....+..+.+.
T Consensus 74 g~~~~aef~pIV~fVeak~~~l~---s~lsE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs 150 (257)
T KOG3027|consen 74 GKTLFAEFEPIVDFVEAKGVTLT---SWLSEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLS 150 (257)
T ss_pred cchhhhhhhHHHHHHHHhccchh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHH
Confidence 8888877777 6655432111 2222001111222220 0000011111111111111
Q ss_pred --------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcc-----cc
Q 048166 137 --------------LRGLVPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPK-----AA 197 (224)
Q Consensus 137 --------------~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~-----~~ 197 (224)
+-....+....+.+.+++...++.|+.+|+.++||.||+||-+|..+|+.+..+..+.. ..
T Consensus 151 ~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~ 230 (257)
T KOG3027|consen 151 HILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELAN 230 (257)
T ss_pred HHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHH
Confidence 11123445567888899999999999999999999999999999999999999987531 12
Q ss_pred cCCCChhHHHHHHHhhhc
Q 048166 198 AVTPRPCANAWWNDIASG 215 (224)
Q Consensus 198 ~~~~~p~l~~w~~r~~~~ 215 (224)
..++|++|-++.+|+.+.
T Consensus 231 ~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 231 ILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 368899999999999874
No 87
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.30 E-value=7.1e-12 Score=79.92 Aligned_cols=67 Identities=33% Similarity=0.527 Sum_probs=56.7
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHH
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAS 91 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~ 91 (224)
++|| ++.||+|++++++|.++|++ |+.+.++...... .++.+.+|.+++|+|+++|.+++||.+ ||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~-~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLP-YELVPVDLGEGEQ--EEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC-cEEEEeCCCCCCC--HHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4677 56899999999999999999 9999887654322 257889999999999988999999998 764
No 88
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.28 E-value=8.6e-12 Score=80.73 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=49.9
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhh
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTW 93 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~ 93 (224)
+.||+|++++++|+++|++ |+.+.++.. .+||.|+||+|+++|..++||.+ ||+++
T Consensus 14 s~sp~~~~v~~~L~~~~i~-~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 14 SLSPECLKVETYLRMAGIP-YEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCCHHHHHHHHHHHhCCCc-eEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 4899999999999999999 999987642 17899999999999999999999 98863
No 89
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.25 E-value=2.3e-11 Score=87.26 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhc
Q 048166 147 TEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASG 215 (224)
Q Consensus 147 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~ 215 (224)
.+...+++.+.++.+|++|++++|++||++|+||+++++++.+.....+....+.+|+|.+|++||.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 457778899999999999999999999999999999999999887653333468999999999999863
No 90
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.23 E-value=4e-11 Score=84.71 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHH---hcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhccC
Q 048166 149 AEMEKLGKVLDVCEER---LSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQKA 224 (224)
Q Consensus 149 ~~~~~~~~~l~~le~~---L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 224 (224)
...+.+.+.++.+|.. +++++|++|| +|+||+++++.+.++...+ .. . .|+|.+|++|+.++|++++-+++
T Consensus 41 ~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~-~~-~--~P~l~~~~~rv~~rPsv~~~~~~ 114 (114)
T cd03194 41 AVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYG-LP-L--SPAAQAYVDALLAHPAMQEWIAA 114 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcC-CC-C--CHHHHHHHHHHHCCHHHHHHHhC
Confidence 3344444445555444 4567899999 9999999999998886542 21 2 39999999999999999987654
No 91
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.18 E-value=9e-11 Score=81.33 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhh
Q 048166 141 VPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIA 213 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~ 213 (224)
..+++..+...+++.+.++.||++|++++|++|+++|+||+++++.+.++.... ....++|+|.+|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 35 EADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYTHVADEGG--FDLADYPAIRAWLARIE 105 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHHHhccccC--CChHhCccHHHHHHhhC
Confidence 345677888999999999999999988899999999999999999998876542 22678999999999874
No 92
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.17 E-value=6.7e-11 Score=81.38 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc--eeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhh
Q 048166 145 KITEAEMEKLGKVLDVCEERLSKSK--YLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIAS 214 (224)
Q Consensus 145 ~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~ 214 (224)
...+...+++.+.+..+|++|+++. ||+|++||+||+++++.+...... .. .+++|+|.+|++||++
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 31 ASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC-HH--TTTCHHHHHHHHHHHT
T ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc-cc--ccccHHHHHHHHhhcC
Confidence 3567888899999999999998877 999999999999999999777643 11 1699999999999975
No 93
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.16 E-value=1.1e-10 Score=78.58 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCc-cc----ccCCCChhHHHHHHHhh
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTP-KA----AAVTPRPCANAWWNDIA 213 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~~----~~~~~~p~l~~w~~r~~ 213 (224)
+.......+++.+.++.+|++|++++|++|+++|+||+++++.+.++.... .. ...+.+|+|.+|++|+.
T Consensus 14 ~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 14 WTLTREIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 344557788899999999999999999999999999999999998886532 11 13578999999999974
No 94
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.12 E-value=2.4e-10 Score=80.71 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhhhc
Q 048166 146 ITEAEMEKLGKVLDVCEERLS-KSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLKLQ 222 (224)
Q Consensus 146 ~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~ 222 (224)
..+...+.+.+.+..+|..|+ +++|++| ++|+||+++++.+.|....+ .. +. |++.+|.+|+.+||+|++.+
T Consensus 39 ~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~~~~~~~g-~~-l~--p~l~ay~~r~~~rPa~~~~~ 111 (114)
T cd03195 39 LSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALMLNRLVLNG-DP-VP--ERLRDYARRQWQRPSVQAWL 111 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHHHHHHHcC-CC-CC--HHHHHHHHHHHCCHHHHHHH
Confidence 456778888999999999995 5589999 59999999999999887763 32 33 99999999999999999865
No 95
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.09 E-value=3.5e-10 Score=77.23 Aligned_cols=70 Identities=29% Similarity=0.440 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCccc-ccCCCChhHHHHHHHh
Q 048166 143 DEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKA-AAVTPRPCANAWWNDI 212 (224)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~-~~~~~~p~l~~w~~r~ 212 (224)
+++..+...+++.+.++.||++|++++|++|+++|+||+++++++.++...... ...+.+|++.+|++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 30 DEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 466788889999999999999999999999999999999999999999875411 1358899999999875
No 96
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.06 E-value=4e-10 Score=78.05 Aligned_cols=68 Identities=28% Similarity=0.317 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CceeecCCCchhhhhhHhHHHHhhhCccccc-CCCChhHHHHHHHh
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSK--SKYLAGDDCTMADMQYIPCLVYFMRTPKAAA-VTPRPCANAWWNDI 212 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~-~~~~p~l~~w~~r~ 212 (224)
+.......+.+.+.++.||++|++ ++|++|+++|+||+++++++.++.... ... ...+|+|.+|++++
T Consensus 34 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 34 EKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYLD-PKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhhC-chhhHHhChhHHHHHHhC
Confidence 566778888899999999999987 899999999999999999998886543 233 67899999999985
No 97
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.05 E-value=2.2e-10 Score=82.39 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhC-----cccccCCCChhHHHHHHHhh
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRT-----PKAAAVTPRPCANAWWNDIA 213 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~-----~~~~~~~~~p~l~~w~~r~~ 213 (224)
....++..+...+.++.|++.|++++||+||+||.||+++++.+..+... +.....+++|+|.+|++||.
T Consensus 52 r~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 52 DKTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 34567888889999999999999999999999999999999998888643 11123678999999999974
No 98
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.05 E-value=5.8e-10 Score=71.95 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=47.1
Q ss_pred cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHh
Q 048166 26 ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAST 92 (224)
Q Consensus 26 ~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~ 92 (224)
...+++|.|++++|+++|++ |+.+.. ..+ + ..+|.|+||+|++||.+|+||.+ ||++
T Consensus 14 ~~~~~~~~kv~~~L~elglp-ye~~~~--~~~-----~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~ 73 (74)
T cd03079 14 LPDNASCLAVQTFLKMCNLP-FNVRCR--ANA-----E--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEA 73 (74)
T ss_pred cCCCCCHHHHHHHHHHcCCC-cEEEec--CCc-----c--ccCCCCcccEEEECCEEEeCHHHHHHHHhc
Confidence 45789999999999999999 998732 211 1 25678999999999999999999 9876
No 99
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.02 E-value=1.2e-09 Score=74.92 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCc-ccccCCCChhHHHHHHHh
Q 048166 141 VPDEKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTP-KAAAVTPRPCANAWWNDI 212 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~r~ 212 (224)
..++...+...+++.+.++.+|++|++++| +++|+||+++++.+.++.... +....+++|+|.+|++||
T Consensus 29 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 29 KRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 456788999999999999999999998888 889999999999998886432 223358899999999986
No 100
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.00 E-value=1.2e-09 Score=74.78 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhh
Q 048166 152 EKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIAS 214 (224)
Q Consensus 152 ~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~ 214 (224)
+++.+.++.+|++|++++|++|+++|+|||++++.+.+. . . ..+.+|+|.+|++|+.+
T Consensus 38 ~~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~---~-~-~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 38 KEKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQT---G-L-ASAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHc---c-c-ccccChHHHHHHHHHHh
Confidence 455578889999999999999999999999999887643 1 1 23689999999999976
No 101
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.95 E-value=2e-09 Score=78.44 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCccc-----ccCCCChhHHHHHHHhhh
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKA-----AAVTPRPCANAWWNDIAS 214 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~-----~~~~~~p~l~~w~~r~~~ 214 (224)
....++..++..+.++.||+.|++++||+||++|.+|+++++.+..+...+.. ...+++|+|.+|++|+.+
T Consensus 59 ~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 59 TEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999998877643211 236789999999999985
No 102
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.85 E-value=6.8e-09 Score=75.71 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHh-cCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhh
Q 048166 150 EMEKLGKVLDVCEERL-SKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIAS 214 (224)
Q Consensus 150 ~~~~~~~~l~~le~~L-~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~ 214 (224)
.++.+...++.+-+.+ .+++|+.|++||+||+++++.+..+....+..+..++|+|.+|++||.+
T Consensus 80 ~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 80 VREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHH
Confidence 4455555554443444 4578999999999999999999888876434357799999999999986
No 103
>PRK10638 glutaredoxin 3; Provisional
Probab=98.67 E-value=3e-08 Score=65.85 Aligned_cols=66 Identities=6% Similarity=0.022 Sum_probs=54.9
Q ss_pred CceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 20 TSLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 20 ~~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
..+++|+ +.||||++++.+|...|++ |+.+.++... ....++.+.++.+++|+|..+|..|-+...
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~-y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~ 68 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVS-FQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDD 68 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCC-cEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 3588995 6999999999999999999 9998876432 134667788999999999988999887766
No 104
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.57 E-value=1.2e-07 Score=62.39 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHH
Q 048166 19 PTSLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FAS 91 (224)
Q Consensus 19 ~~~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~ 91 (224)
...++||+ ++||+|.+++-+|...|++ |+.+.++-.. ...++...++..+||++..+|..|.++.. ||+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~-y~~idi~~~~---~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYD-FEEIPLGNDA---RGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCC-cEEEECCCCh---HHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 34699995 6999999999999999999 9998765321 23455566788899999999999999877 663
No 105
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.52 E-value=2.4e-07 Score=59.87 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=46.8
Q ss_pred CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH---HHHhh
Q 048166 27 RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP---FASTW 93 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a---yL~~~ 93 (224)
+.||+|.++.++|++.|++ |+++..+ + ...+|.|++|+|+++|..+.||.. ||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~-~~v~~~~-------n---~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAP-LKVVPSN-------N---PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCC-EEEEecC-------C---CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 5789999999999999999 9886322 1 135789999999999999999988 88764
No 106
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.51 E-value=2e-07 Score=59.72 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=51.8
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
+++|+ .+||+|++++.+|.++|++ |..+.++.. ....+++.+.||.+.+|+|+++|..+.+...
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~-~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIP-FEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCC-eEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 67885 5999999999999999999 998876532 2234567788999999999988888877655
No 107
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.41 E-value=3.7e-07 Score=59.01 Aligned_cols=64 Identities=8% Similarity=-0.085 Sum_probs=51.8
Q ss_pred ceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecH
Q 048166 21 SLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQG 87 (224)
Q Consensus 21 ~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~ 87 (224)
.+++| .+.||+|++++.+|...||+ |+.+.+... ....+++.+.++.+++|++..+|..|.+-.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~-~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~ 66 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLP-YVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLT 66 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCc-eEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHH
Confidence 47888 46999999999999999999 999877532 223567888899999999998888776543
No 108
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.35 E-value=1.1e-06 Score=56.52 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=50.7
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
++++|+ +.||+|.+++-+|...|++ |+.+.++-.. ....+...+...++|.+..+|..+.++..
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~-~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~ 66 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS-YEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDD 66 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC-cEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHH
Confidence 478885 6999999999999999999 9988776322 12334455677899999988999888766
No 109
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.35 E-value=6e-07 Score=58.32 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=50.3
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcC-CCCccceEE-eCCeeeeecHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLN-PFGLMLAME-DGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~n-p~g~vP~L~-~~g~~l~eS~a 88 (224)
+++|+ ++||+|++++-+|...|++ |+.+.++ ........+.+.| +...||+++ ++|.++.++..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~-~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA-YEWVDIE--EDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc-eEEEeCc--CCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCH
Confidence 67875 6999999999999999999 9876654 2222334556676 889999997 67888988876
No 110
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.27 E-value=2e-06 Score=56.77 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=51.6
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH-HHHhh
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP-FASTW 93 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a-yL~~~ 93 (224)
++++|. ++||+|.+++-+|..+||+ |+.+.++-.. ...+....++..+||+++.+|..+.+-.. -|.+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~-~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFD-FEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWSGFRPDMINRL 72 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCc-eEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEecCCHHHHHHH
Confidence 488995 6999999999999999999 9998876321 11222344688899999988877776666 44443
No 111
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=4e-05 Score=61.92 Aligned_cols=171 Identities=13% Similarity=0.136 Sum_probs=102.1
Q ss_pred CCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE-eCCeeeeecHH---HHHhhhcCCCCCCCC
Q 048166 28 HHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME-DGGDTLFNQGP---FASTWHASTGKEEPI 103 (224)
Q Consensus 28 ~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~-~~g~~l~eS~a---yL~~~~~~~~~~~~L 103 (224)
.++-|.++.+++.+++-+ .++...+ .+ ..+|.|++|+|+ ++|..++.=.. ||...-.+ ..+
T Consensus 16 id~~sL~~l~y~kl~~~~-l~v~~ss-------N~---~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~k----y~~ 80 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAP-LKVVVSS-------NP---WRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKK----YNL 80 (313)
T ss_pred cChhHHHHHHHHHHhCCC-ceeEeec-------CC---CCCCCCCCCeEEecCCceeccHHHHHHHHHHhccc----CCc
Confidence 778999999999999966 5444322 11 257889999999 55677766665 88774211 122
Q ss_pred CcCCccccchhee---------------------eccccChhHHHHHHHHHhccCC----C-------------CCCCHH
Q 048166 104 CCGLVASKESAII---------------------EMHQFDGPIRSIIRQLILHPLR----G-------------LVPDEK 145 (224)
Q Consensus 104 ~p~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~----~-------------~~~~~~ 145 (224)
-+. ....+++.. ....+.............-|+. + .+...+
T Consensus 81 d~d-l~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~ 159 (313)
T KOG3028|consen 81 DAD-LSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTE 159 (313)
T ss_pred Ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchh
Confidence 220 011122221 0000111000000000000000 0 011223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCccc-----ccCCCChhHHHHHHHhhh
Q 048166 146 ITEAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKA-----AAVTPRPCANAWWNDIAS 214 (224)
Q Consensus 146 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~-----~~~~~~p~l~~w~~r~~~ 214 (224)
..++......+++..|++.|+.+.|++||+||--|+.++..+..+...+.. .-...+++|.++.+++..
T Consensus 160 ~e~~i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 160 REDQIYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 455666777899999999999999999999999999999999996654311 113458999999999876
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.23 E-value=1.8e-06 Score=54.97 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=51.8
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
+++|+ .+||+|++++.+|..+|++ |+.+.+... .....++.+.++..++|++..+|..+.++..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~-~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~ 66 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIE-FEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCc-EEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHH
Confidence 67885 6999999999999999999 987766532 2234566778999999999999998887754
No 113
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.16 E-value=3.9e-06 Score=53.69 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=49.6
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
++++|+ ++||+|++++.+|...|++ |..+.++- .....+++.+.++.+.+|+|..+|..+.+...
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~-~~~vdi~~--~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIA-FEEIDVEK--DSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCe-EEEEeccC--CHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 478885 6999999999999999999 98876642 22223456677899999999987877755433
No 114
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.1e-05 Score=53.13 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=48.1
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeee
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFN 85 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~e 85 (224)
++++|. +.||||.++.-+|..+|++ |+.+.++...++.........++..+||.+..+|..+..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~-~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVD-YEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCC-cEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 478884 6999999999999999999 999888755432222222345688999999988766554
No 115
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.99 E-value=9.7e-06 Score=52.39 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=48.3
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCC-ccceEEeCCeeeeecHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFG-LMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g-~vP~L~~~g~~l~eS~a 88 (224)
+++|+ +.||+|.+++-+|...|++ |+.+.++.. . ....++....... .||++..+|..+.+...
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~-~~~i~i~~~-~-~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~ 67 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVD-YEEIDVDGD-P-ALREEMINRSGGRRTVPQIFIGDVHIGGCDD 67 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCc-EEEEECCCC-H-HHHHHHHHHhCCCCccCEEEECCEEEeChHH
Confidence 67884 6999999999999999999 999877643 1 1223344444444 89999988988877665
No 116
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=97.97 E-value=1.9e-05 Score=54.51 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhhh
Q 048166 144 EKITEAEMEKLGKVLDVCEERLSK-SKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLLK 220 (224)
Q Consensus 144 ~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~ 220 (224)
....+...+.+.+++...+..|+. ++||+|+ .||||..+++.+.++...+ . +--+.+..|.++.-+||++++
T Consensus 38 ~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ml~Rl~~~g-d---~vP~~l~~Ya~~qwqrpsVQ~ 110 (117)
T PF14834_consen 38 PPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLALMLNRLVTYG-D---PVPERLADYAERQWQRPSVQR 110 (117)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHHHHHHHHTTT--------HHHHHHHHHHHT-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHHCCHHHHH
Confidence 344566777778888888888876 7999998 9999999999999998764 1 222589999999999999985
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.90 E-value=1.7e-05 Score=51.02 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=42.5
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCe-eee
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGD-TLF 84 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~-~l~ 84 (224)
+++|+ +.||+|++++-+|..+|++ |+.+.++-.. ....++ ..++...||+++.+|. .+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~-~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g~~~~~ 61 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIA-FEEINIDEQP--EAIDYV-KAQGFRQVPVIVADGDLSWS 61 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCc-eEEEECCCCH--HHHHHH-HHcCCcccCEEEECCCcEEe
Confidence 47884 6999999999999999999 9998776321 112223 3456778999997554 443
No 118
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.84 E-value=2e-05 Score=51.54 Aligned_cols=64 Identities=8% Similarity=-0.043 Sum_probs=51.0
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
+++|+ +.||+|.+++-+|+..|++ |+.+.++... ....++...+....+|.+..+|..+.+...
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~-~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~ 65 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT-FTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDD 65 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC-cEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHH
Confidence 46784 6999999999999999999 9999876432 123456666777899999988988877776
No 119
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.83 E-value=1e-05 Score=50.01 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=46.3
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeee
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTL 83 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l 83 (224)
+++|+ +.||+|.+++-+|...|++ |+.+.++... ....++.+.+....+|++..+|..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~-y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP-YEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE-EEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe-eeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 46774 5999999999999999999 9999887542 2334555556778999999888764
No 120
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.70 E-value=4.9e-05 Score=52.08 Aligned_cols=69 Identities=7% Similarity=-0.038 Sum_probs=52.2
Q ss_pred CCceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCC-CCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 19 PTSLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNG-AHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 19 ~~~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~-~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
..++++|+ ++||||.+++-+|...|++ |+.++++.... ......+...+...+||.+..+|..|.+...
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~-~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~dd 77 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVN-PAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLEN 77 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCC-CEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHH
Confidence 34689995 6999999999999999999 99888874321 1011234455778899999988988877766
No 121
>PHA03050 glutaredoxin; Provisional
Probab=97.65 E-value=8e-05 Score=51.85 Aligned_cols=68 Identities=6% Similarity=0.026 Sum_probs=51.2
Q ss_pred CceEEec-CCCchHHHHHHHHHhCCC---CcccccccccCC-CCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 20 TSLKFIA-RHHPAAQHECCSAYEKDI---DEYELPPVDIVN-GAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 20 ~~~~ly~-~~sp~~~~v~~~L~~~gi---~~~~~~~v~~~~-~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
..+++|+ ++||||.+++-+|...|+ + |+.+.++-.. +.....++.+.+...+||.+..+|..|-+...
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~-~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~dd 85 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGA-YEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSD 85 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCC-cEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHH
Confidence 4689994 699999999999999999 6 7777766311 11123456667777899999988988877665
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.50 E-value=0.00014 Score=47.59 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=50.5
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccccCCC-CCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNG-AHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~-~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
+++|+ .+||+|.+++-+|...+++ |+...++.... .+....+.+.+...++|.+..+|..+.++..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~ 69 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDD 69 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHH
Confidence 67775 5999999999999999999 99998876532 1112234456667789999988888877766
No 123
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.41 E-value=0.00035 Score=46.35 Aligned_cols=71 Identities=7% Similarity=-0.074 Sum_probs=51.2
Q ss_pred ceEEec-CCCchHHHHHHHHHh-----CCCCcccccccccCCCCCCCcchhhcCC--CCccceEEeCCeeeeecHH---H
Q 048166 21 SLKFIA-RHHPAAQHECCSAYE-----KDIDEYELPPVDIVNGAHMHQPYLSLNP--FGLMLAMEDGGDTLFNQGP---F 89 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~-----~gi~~~~~~~v~~~~~~~~~~~~~~~np--~g~vP~L~~~g~~l~eS~a---y 89 (224)
.+++|+ ++||+|.+++-+|.. .|++ |+.+.++-... ...++..... ...||.+..+|..+.+... +
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~-~~~idi~~~~~--~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFD-YRYVDIHAEGI--SKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCc-EEEEECCCChH--HHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 378884 699999999999999 8999 99887763211 1233444333 2579999988998887766 6
Q ss_pred HHhhh
Q 048166 90 ASTWH 94 (224)
Q Consensus 90 L~~~~ 94 (224)
+.+.+
T Consensus 79 ~~~~~ 83 (85)
T PRK11200 79 VKENL 83 (85)
T ss_pred HHHhc
Confidence 66654
No 124
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.33 E-value=0.00039 Score=47.45 Aligned_cols=66 Identities=5% Similarity=-0.040 Sum_probs=49.9
Q ss_pred CceEEec------CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 20 TSLKFIA------RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 20 ~~~~ly~------~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
.++.+|. ++||||.+++-+|...|++ |+.+.+. .......++...+...+||.+..+|..|-+...
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~-~~~~di~--~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~dd 83 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVP-FAYVNVL--EDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDI 83 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCC-EEEEECC--CCHHHHHHHHHHhCCCCCCEEEECCEEEeChHH
Confidence 4577773 6899999999999999999 9987764 222122344456777799999998988877766
No 125
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.21 E-value=0.00087 Score=44.58 Aligned_cols=70 Identities=4% Similarity=-0.100 Sum_probs=48.6
Q ss_pred eEEec-CCCchHHHHHHHHHhCC-----CCcccccccccCCCCCCCcchhhcCCC--CccceEEeCCeeeeecHH---HH
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKD-----IDEYELPPVDIVNGAHMHQPYLSLNPF--GLMLAMEDGGDTLFNQGP---FA 90 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~g-----i~~~~~~~v~~~~~~~~~~~~~~~np~--g~vP~L~~~g~~l~eS~a---yL 90 (224)
+++|+ ++||||.+++-+|..++ ++ |+.+.++.. +. ...++...... ..||.+..+|..+-++.. ++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~-~~~idi~~~-~~-~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFE-FRYIDIHAE-GI-SKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCc-EEEEECCCC-HH-HHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 57784 69999999999999985 56 666555421 11 12334444333 589999989999988877 66
Q ss_pred Hhhh
Q 048166 91 STWH 94 (224)
Q Consensus 91 ~~~~ 94 (224)
.+.+
T Consensus 79 ~~~~ 82 (86)
T TIGR02183 79 KENF 82 (86)
T ss_pred Hhcc
Confidence 6644
No 126
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.02 E-value=0.0011 Score=44.41 Aligned_cols=66 Identities=5% Similarity=-0.042 Sum_probs=49.8
Q ss_pred CceEEec------CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 20 TSLKFIA------RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 20 ~~~~ly~------~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
.++.+|. ++||||.+++-+|...|++ |+.+.+.-. .....++.+.+...++|.+..+|..|-+...
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~ 79 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD-FGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDI 79 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-eEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHH
Confidence 3577773 4899999999999999999 999987532 1123344456777799999988888876665
No 127
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=96.69 E-value=0.0081 Score=43.20 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhh
Q 048166 148 EAEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 148 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~ 218 (224)
....++++..|..||..+..... +++++|+.|+.+|+.|..+..+.+. .=-|++.+|+++|.+...+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~-~n~~LS~dDi~lFp~LR~Ltivkgi---~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNA-VNGELSIDDIILFPILRSLTIVKGI---QWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTB-TTSS--HHHHHHHHHHHHHCTCTTS------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccc-cCCCCCHHHHHHHHHHhhhhhccCC---cCCHHHHHHHHHHHHHcCC
Confidence 46667778888888888864434 4448999999999999999876533 2236999999999987654
No 128
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.52 E-value=0.0042 Score=53.54 Aligned_cols=65 Identities=8% Similarity=0.047 Sum_probs=47.5
Q ss_pred CceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchh---------hcCCCCccceEEeCCeeeeecHH
Q 048166 20 TSLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYL---------SLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 20 ~~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~---------~~np~g~vP~L~~~g~~l~eS~a 88 (224)
..+++|+ ++||+|.++.-+|...||+ |+.+.++ +.. ...++. ..+...+||.+..+|..|.+-..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~-~~~idi~--~~~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIP-FTQISLD--DDV-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCC-eEEEECC--CCh-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 3588994 6999999999999999999 9998876 211 111221 22456789999988887766555
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.34 E-value=0.0055 Score=45.03 Aligned_cols=64 Identities=6% Similarity=-0.048 Sum_probs=48.2
Q ss_pred eEEe-cC------CCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCC----CCccceEEeCCeeeeecHH
Q 048166 22 LKFI-AR------HHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNP----FGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly-~~------~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np----~g~vP~L~~~g~~l~eS~a 88 (224)
+.+| .+ .+|++.+++-+|+..||+ |+.+.|++.. ....++.+... ..+||.+..+|..|-+...
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~-~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de 76 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVK-FDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEE 76 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCc-EEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence 5677 44 799999999999999999 9999887542 12334444433 3689999988988877666
No 130
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.31 E-value=0.015 Score=37.31 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=40.2
Q ss_pred CCCchHHHHHHHHHhCCCCccc-ccccccCCCCCCCcchhhcCCCCccceEEe-CCeeeeecHH
Q 048166 27 RHHPAAQHECCSAYEKDIDEYE-LPPVDIVNGAHMHQPYLSLNPFGLMLAMED-GGDTLFNQGP 88 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~~gi~~~~-~~~v~~~~~~~~~~~~~~~np~g~vP~L~~-~g~~l~eS~a 88 (224)
+.+|-|.++.++|.+.+.+ .+ ++.+...+ + .++|.|++|+|.+ ++..+++-..
T Consensus 12 sid~ecLa~~~yl~~~~~~-~~~~~vv~s~n-----~---~~Sptg~LP~L~~~~~~~vsg~~~ 66 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAP-EQQFKVVPSNN-----P---WLSPTGELPALIDSGGTWVSGFRN 66 (72)
T ss_pred ccCHHHHHHHHHHHhCCCC-CceEEEEEcCC-----C---CcCCCCCCCEEEECCCcEEECHHH
Confidence 4789999999999999999 64 33332221 1 3789999999998 8888877655
No 131
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.30 E-value=0.02 Score=40.87 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhh
Q 048166 149 AEMEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQL 218 (224)
Q Consensus 149 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~ 218 (224)
...++++..+..++..+.... .+++++|+.|+.+|+.|..+..+.+. .=-|++.+|+++|.+...+
T Consensus 60 ~~i~~l~~~L~~l~~ll~~~~-~~n~~ls~DDi~lFp~LR~Lt~vkgi---~~P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 60 QYIAALNALLEELDPLILSSE-AVNGQLSTDDIILFPILRNLTLVKGL---VFPPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCcc-ccCCcCCHHHHHHHHHHhhhhhhcCC---CCCHHHHHHHHHHHHHhCC
Confidence 555677778888888885433 35667999999999999999876432 2226899999999987654
No 132
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.15 E-value=0.014 Score=38.04 Aligned_cols=66 Identities=8% Similarity=0.034 Sum_probs=44.6
Q ss_pred EEe-cCCCchHHHHHHHHHhCCCCc-ccccccccCCCC-CCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 23 KFI-ARHHPAAQHECCSAYEKDIDE-YELPPVDIVNGA-HMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 23 ~ly-~~~sp~~~~v~~~L~~~gi~~-~~~~~v~~~~~~-~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
++| .++||+|.+++-+|...+++. |+...++..... .....+.+.+...++|.+..+|..+.++..
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~ 70 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSD 70 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHH
Confidence 456 569999999999999999872 444444432110 001124445666789999988988888766
No 133
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.85 E-value=0.021 Score=35.61 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=37.6
Q ss_pred eEEe-cCCCchHHHHHHHHHhC-----CCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeee
Q 048166 22 LKFI-ARHHPAAQHECCSAYEK-----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLF 84 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~-----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~ 84 (224)
+++| .++||+|.++.-.|.+. +++ |..+.++ . .+++........+|++..+|..+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~-~~~id~~--~----~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNIS-AEMIDAA--E----FPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceE-EEEEEcc--c----CHhHHHHcCCcccCEEEECCEEEE
Confidence 6676 56999999999888875 455 5444332 1 234444455567999998777654
No 134
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.51 E-value=0.016 Score=41.81 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=28.6
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
|+++|+ +.||+|++++-+|...||+ |+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~-~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIP-FTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCC-cEEeecc
Confidence 478995 6999999999999999999 9998764
No 135
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.27 E-value=0.021 Score=40.13 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=28.4
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
|+++|+ +.|++|++++-+|...|++ |+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~-~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIP-FEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCc-eEEEecC
Confidence 478985 6999999999999999999 9988764
No 136
>PRK10824 glutaredoxin-4; Provisional
Probab=95.21 E-value=0.031 Score=39.26 Aligned_cols=66 Identities=2% Similarity=-0.081 Sum_probs=49.6
Q ss_pred CceEEec------CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 20 TSLKFIA------RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 20 ~~~~ly~------~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
.++.+|. +.||||.++.-+|...|++ |....++- .......+...+...+||-+-.+|..|-+...
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~-~~~idi~~--d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~dd 86 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGER-FAYVDILQ--NPDIRAELPKYANWPTFPQLWVDGELVGGCDI 86 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCC-ceEEEecC--CHHHHHHHHHHhCCCCCCeEEECCEEEcChHH
Confidence 4566763 4899999999999999999 98876642 21223345556777899999988988877766
No 137
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.09 E-value=0.022 Score=39.79 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=27.7
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
+++|+ +.||+|++++-+|...|++ |+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~-~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVD-YTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCc-eEEeccc
Confidence 57885 6999999999999999999 9998765
No 138
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.59 E-value=0.036 Score=38.16 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=27.3
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
+++|+ +.||+|++++-+|...|++ |+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~-~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIE-YEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCC-cEEEeec
Confidence 46784 6999999999999999999 9998765
No 139
>PTZ00062 glutaredoxin; Provisional
Probab=94.49 E-value=0.058 Score=41.90 Aligned_cols=67 Identities=4% Similarity=0.018 Sum_probs=49.4
Q ss_pred CCceEEe--c----CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 19 PTSLKFI--A----RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 19 ~~~~~ly--~----~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
..++.+| + +.||||+++.-+|...|++ |+...+. ..+.....+.+.+...+||.+..+|..|-+...
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~-y~~~DI~--~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~ 184 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK-YETYNIF--EDPDLREELKVYSNWPTYPQLYVNGELIGGHDI 184 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC-EEEEEcC--CCHHHHHHHHHHhCCCCCCeEEECCEEEcChHH
Confidence 3456666 2 4899999999999999999 9987665 222223344556767789999988988877666
No 140
>PRK12559 transcriptional regulator Spx; Provisional
Probab=94.41 E-value=0.047 Score=39.35 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=28.6
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
|+++|+ +.|+.|++++-+|...|++ |+.+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~-~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQID-YTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCC-eEEEEee
Confidence 478985 6999999999999999999 9998765
No 141
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.31 E-value=0.051 Score=39.20 Aligned_cols=32 Identities=6% Similarity=0.108 Sum_probs=28.7
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
|+++|+ +.|+.|++++-+|...|++ |+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~-~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLS-YKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCC-eEEEECC
Confidence 478995 6999999999999999999 9998765
No 142
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.08 E-value=0.2 Score=32.23 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=39.4
Q ss_pred eEEecCCCchHHHH----HHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeee
Q 048166 22 LKFIARHHPAAQHE----CCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLF 84 (224)
Q Consensus 22 ~~ly~~~sp~~~~v----~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~ 84 (224)
+.+|.++||.|..+ .-++.+.|++ +++..++- .++ ...--...+|+|..+|..+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~~------~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVTD------MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeCC------HHH-HHHcCCCcCCEEEECCEEEE
Confidence 77889999999998 6688888998 88877761 111 12223457899987776654
No 143
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.17 Score=34.86 Aligned_cols=67 Identities=7% Similarity=0.047 Sum_probs=48.3
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCC-CCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNG-AHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~-~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
++.+|. +.||||.++.-+|...|+. +.+++++-... .+-...+..+....+||.+-.+|..+-....
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~-~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~d 83 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVN-PKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASD 83 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCC-CEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHH
Confidence 466664 6999999999999999999 98888775431 1112223344656799999999988854444
No 144
>PRK10026 arsenate reductase; Provisional
Probab=93.39 E-value=0.1 Score=38.05 Aligned_cols=33 Identities=0% Similarity=-0.098 Sum_probs=28.9
Q ss_pred CceEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 20 TSLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 20 ~~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
.+|++|+ +.|+-|++++-+|...|++ |+++.+.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~-~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTE-PTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCC-cEEEeee
Confidence 4689995 6999999999999999999 9988654
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.15 E-value=0.095 Score=36.86 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=27.0
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
+++|+ +.||+|++++-+|...|++ |+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~-~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIE-YQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCc-eEEEecC
Confidence 46884 6999999999999999999 9988764
No 146
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=92.83 E-value=0.13 Score=36.26 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=28.1
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
++++|+ +.|.-|++++-+|+..||+ |+++.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~-~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIE-YTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCC-cEEEEee
Confidence 589995 5999999999999999999 9887543
No 147
>PRK10853 putative reductase; Provisional
Probab=92.81 E-value=0.13 Score=36.32 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=28.1
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
|+++|+ +.|.-|++++-+|...|++ |+++.+.
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~-~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGID-YRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCC-cEEeehc
Confidence 478995 5999999999999999999 9988653
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.51 E-value=0.13 Score=35.44 Aligned_cols=31 Identities=3% Similarity=0.102 Sum_probs=27.2
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
+++|+ +.|+.|++++-+|...|++ |+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~-~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVA-YTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCC-eEEEecc
Confidence 46784 6999999999999999999 9988764
No 149
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=92.24 E-value=0.17 Score=35.42 Aligned_cols=31 Identities=6% Similarity=-0.023 Sum_probs=27.6
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
+++|+ +.|+.|++++-+|...|++ |+++.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~-~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHE-VEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC-cEEeehh
Confidence 68885 6999999999999999999 9998654
No 150
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.3 Score=31.18 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=42.3
Q ss_pred ceEEec-CCCchHHHHHHHHHhCCCCcccccccccCCCC--------CCCcchhhcCCCC--ccceEE-eCCeeee
Q 048166 21 SLKFIA-RHHPAAQHECCSAYEKDIDEYELPPVDIVNGA--------HMHQPYLSLNPFG--LMLAME-DGGDTLF 84 (224)
Q Consensus 21 ~~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~--------~~~~~~~~~np~g--~vP~L~-~~g~~l~ 84 (224)
+.+||+ ..||-|....-.|+-+++. |+.+++.-.-.. ...++|.+....| -+|+|. +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~-yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVD-YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCC-ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 346775 5999999999999999999 999876532110 0134454333334 479997 6776654
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=91.26 E-value=0.41 Score=32.18 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=44.8
Q ss_pred eEEec-CCCc------hHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCC----CCccceEEeCCeeeeecHH
Q 048166 22 LKFIA-RHHP------AAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNP----FGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 22 ~~ly~-~~sp------~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np----~g~vP~L~~~g~~l~eS~a 88 (224)
+++|+ +.+. .+++|+.+|.-+||+ |+.+.|+... ....+..+..+ ...+|-+-.+|..|-+...
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~-f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~dd 76 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIE-FEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEA 76 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCc-eEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHH
Confidence 56773 3333 566889999999999 9999887642 23344444433 4688988888888877766
No 152
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.13 E-value=0.12 Score=45.48 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcc-cccCCCChhHHHHHHHhhhchh
Q 048166 151 MEKLGKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPK-AAAVTPRPCANAWWNDIASGMQ 217 (224)
Q Consensus 151 ~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~-~~~~~~~p~l~~w~~r~~~~p~ 217 (224)
...+...+..|+..|.-+.||+|.++|+||+++++.+..--.... ....+.+-++.+|++-....++
T Consensus 90 ~~~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~a 157 (712)
T KOG1147|consen 90 FDEISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQEA 157 (712)
T ss_pred hHHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHHH
Confidence 345666777788888778899999999999999999876422110 1123456789999983333333
No 153
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=90.71 E-value=0.31 Score=34.85 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=27.6
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
|++|+ +.|.-|++++-+|.+.|++ |+++.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~-~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHD-VEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCC-cEEEecc
Confidence 78885 5999999999999999999 9998654
No 154
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=90.63 E-value=0.77 Score=34.55 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCC---ceeecCC-CchhhhhhHhHHHHhhh
Q 048166 153 KLGKVLDVCEERLSKS---KYLAGDD-CTMADMQYIPCLVYFMR 192 (224)
Q Consensus 153 ~~~~~l~~le~~L~~~---~~l~G~~-~t~AD~~~~~~l~~~~~ 192 (224)
.-.+++..|++.|++. .|+.|+. +|-+||.+++.|.-+..
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~ 155 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLV 155 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 3567888889999887 9999988 99999999999988763
No 155
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.74 E-value=0.65 Score=30.91 Aligned_cols=60 Identities=10% Similarity=-0.033 Sum_probs=37.6
Q ss_pred CCCceEEe-cCCCchHHHHHHHHHhC-----CCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeee
Q 048166 18 LPTSLKFI-ARHHPAAQHECCSAYEK-----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLF 84 (224)
Q Consensus 18 ~~~~~~ly-~~~sp~~~~v~~~L~~~-----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~ 84 (224)
.+-.+.+| .++|++|..+.-++... ++. +..+.++ ..++......--.+|+++.+|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~-~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIE-HEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCce-EEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 34457776 56999999988777665 444 5444433 1234444445557999987676543
No 156
>PHA02125 thioredoxin-like protein
Probab=88.06 E-value=1.3 Score=28.22 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=34.4
Q ss_pred eEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEe
Q 048166 22 LKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMED 78 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~ 78 (224)
+.+| .++|+.|+++.-.|+ ++. ++...++.. ...++.+...-..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~-~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVE-YTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHh-heEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 4555 569999999988886 456 766666532 2345555566678999984
No 157
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=88.05 E-value=1.7 Score=27.76 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=37.4
Q ss_pred eEEecCCCchHHHHHH----HHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeec
Q 048166 22 LKFIARHHPAAQHECC----SAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQ 86 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~----~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS 86 (224)
++++++.||+|.++.- ++...|+. ++...+. ..++. .....-.+|+|..||.+.+..
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~i~-~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELGIE-VEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTTEE-EEEEETT------THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 5667778999996654 55667887 7666541 12222 445556899999888776655
No 158
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=87.90 E-value=0.57 Score=32.66 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=26.7
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
|++|+ +.|+-|++++-+|...|++ |+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~-~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIE-PEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC-eEEEecc
Confidence 46874 6999999999999999999 9987653
No 159
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=87.73 E-value=0.58 Score=32.72 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=26.8
Q ss_pred eEEec-CCCchHHHHHHHHHhCCCCcccccccc
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
+++|+ +.|+-|++++-+|...|++ |+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~-~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIE-PEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC-eEEEecc
Confidence 46884 6999999999999999999 9987654
No 160
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=87.26 E-value=1.8 Score=27.55 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=35.7
Q ss_pred eEEe-cCCCchHHHHHHHHHh----CCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCe
Q 048166 22 LKFI-ARHHPAAQHECCSAYE----KDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGD 81 (224)
Q Consensus 22 ~~ly-~~~sp~~~~v~~~L~~----~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~ 81 (224)
+++| .++||+|..+.-.|.. .+.. +.+..++... .++.........+|++..+|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 6676 5699999988877754 3544 5555666432 334444455567999986665
No 161
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=84.05 E-value=4.5 Score=26.17 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=37.7
Q ss_pred eEEec-CCCchHHHHHHHHHhCC--CCcccccccccCCCCCCCcchhhcCCCCccceEEeCC
Q 048166 22 LKFIA-RHHPAAQHECCSAYEKD--IDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGG 80 (224)
Q Consensus 22 ~~ly~-~~sp~~~~v~~~L~~~g--i~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g 80 (224)
++||+ +.|+-|..+.-.|.... .+ |++..+|... ++++...-- -.||+|..+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~----d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDE----DPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTT----THHHHHHSC-TSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCC----CHHHHHHhc-CCCCEEEEcC
Confidence 78886 59999999999999655 44 6677777663 344433332 4899999666
No 162
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=80.78 E-value=2.3 Score=24.55 Aligned_cols=50 Identities=20% Similarity=0.098 Sum_probs=31.4
Q ss_pred EecCCCchHHHHHHHHH-----hCCCCcccccccccCCCCCCCcchhhcCCCCccceEE
Q 048166 24 FIARHHPAAQHECCSAY-----EKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME 77 (224)
Q Consensus 24 ly~~~sp~~~~v~~~L~-----~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~ 77 (224)
++..+|++|+++...+. ..++. +..+.++-... .......++...+|+++
T Consensus 4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 4 FYAPWCPFCQALRPVLAELALLNKGVK-FEAVDVDEDPA---LEKELKRYGVGGVPTLV 58 (69)
T ss_pred EECCCChhHHhhhhHHHHHHhhCCCcE-EEEEEcCCChH---HhhHHHhCCCccccEEE
Confidence 34669999999999999 45555 55444332211 11112356778899997
No 163
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.31 E-value=2.2 Score=29.02 Aligned_cols=69 Identities=6% Similarity=0.018 Sum_probs=48.1
Q ss_pred CCCCceEEec------CCCchHHHHHHHHHhCC-CCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 17 TLPTSLKFIA------RHHPAAQHECCSAYEKD-IDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 17 ~~~~~~~ly~------~~sp~~~~v~~~L~~~g-i~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
...+++.||. +-|.||.++.=+|..+| ++ |..+.| ...+.-...+.+.+-..++|-|-.+|+.+-+|..
T Consensus 12 i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~-~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DI 87 (105)
T COG0278 12 IKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVD-FAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDI 87 (105)
T ss_pred hhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcc-eeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHH
Confidence 3445677762 58999999999999999 67 776654 3221122333334556789999889999988877
No 164
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=68.16 E-value=5.7 Score=27.06 Aligned_cols=64 Identities=13% Similarity=-0.042 Sum_probs=35.8
Q ss_pred eEEec-CCCc------hHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcC---------CCCccceEEeCCeeeee
Q 048166 22 LKFIA-RHHP------AAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLN---------PFGLMLAMEDGGDTLFN 85 (224)
Q Consensus 22 ~~ly~-~~sp------~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~n---------p~g~vP~L~~~g~~l~e 85 (224)
+++|. +.+. ..+++...|..++|+ |+.+.+... +....+..... +....|-|..+|..+-+
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~-fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIP-FEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT---EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCC-cEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 77874 3333 456899999999999 998877652 22233333322 22234677777777655
Q ss_pred cHH
Q 048166 86 QGP 88 (224)
Q Consensus 86 S~a 88 (224)
-..
T Consensus 80 ye~ 82 (99)
T PF04908_consen 80 YED 82 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 165
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=67.17 E-value=7.2 Score=25.66 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=33.2
Q ss_pred eEEecCCCchHHHHHHHHHhCCC----CcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 22 LKFIARHHPAAQHECCSAYEKDI----DEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi----~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+.+|.+||+.|++..-.+...-- . +.+..++.. ..+++...-....+|+++ ++|..+
T Consensus 17 v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 17 VDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 44456799999987666554322 2 334445433 234554444556789997 566543
No 166
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=66.08 E-value=13 Score=24.70 Aligned_cols=54 Identities=7% Similarity=-0.089 Sum_probs=31.2
Q ss_pred ecCCCchHHHHHHHHHhC----CCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 25 IARHHPAAQHECCSAYEK----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 25 y~~~sp~~~~v~~~L~~~----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+.++|+.|+...-.+... +-. +....++.. ..+++....-...+|++. .+|..+
T Consensus 21 ~a~~C~~C~~~~~~l~~l~~~~~~~-v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 21 TSPTCGPCRTLKPILNKVIDEFDGA-VHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred ECCCChhHHHHHHHHHHHHHHhCCc-eEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 357999999887766541 112 344445533 234444443446789886 566554
No 167
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=66.06 E-value=26 Score=21.96 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=31.9
Q ss_pred EEecCCCchHHHHHHHHHh-----CCCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCee
Q 048166 23 KFIARHHPAAQHECCSAYE-----KDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDT 82 (224)
Q Consensus 23 ~ly~~~sp~~~~v~~~L~~-----~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~ 82 (224)
.+|.++|++|+...-.+.. .++. +-. ++... ..++........+|++. .+|..
T Consensus 16 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~--i~~~~----~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 16 DFWAPWCGPCKAIAPVLEELAEEYPKVK-FVK--VDVDE----NPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred EEECCCChhHHHhhHHHHHHHHHCCCce-EEE--EECCC----ChhHHHhcCcccccEEEEEECCEE
Confidence 3346799999988777766 5555 433 33322 33444444556789886 45654
No 168
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=65.45 E-value=5.1 Score=31.54 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhhhchhhh
Q 048166 155 GKVLDVCEERLSKSKYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIASGMQLL 219 (224)
Q Consensus 155 ~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~ 219 (224)
.+.++.++..|++++|.-|.+++-+|+.+|..+.- ......+++..+|++.+.+.-...
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~------ep~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGV------EPQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhccc------CcchhhhhHHHHHHHHHHHHHHHH
Confidence 56677888999999999999999999998765421 222456778899998887654443
No 169
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=64.75 E-value=8.3 Score=25.90 Aligned_cols=52 Identities=13% Similarity=-0.125 Sum_probs=28.8
Q ss_pred EecCCCchHHHHHHHH--------HhCCCCcccccccccCCCCCCCcchhhcCCCCccceEE
Q 048166 24 FIARHHPAAQHECCSA--------YEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME 77 (224)
Q Consensus 24 ly~~~sp~~~~v~~~L--------~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~ 77 (224)
+|.++|++|++..-.+ ...+ . +....++.........++........+|++.
T Consensus 18 f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~-~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 18 FTADWCVTCKVNEKVVFSDPEVQAALKK-D-VVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEcchhHHHHHHHHHhcCCHHHHHHHhC-C-eEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 3467999999876333 1222 4 5555566443211123454444556789886
No 170
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=64.61 E-value=6.2 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=20.3
Q ss_pred cCCCchHHHHHHHHHhCCCCcccccccc
Q 048166 26 ARHHPAAQHECCSAYEKDIDEYELPPVD 53 (224)
Q Consensus 26 ~~~sp~~~~v~~~L~~~gi~~~~~~~v~ 53 (224)
.+.|.-|++++-+|...|++ |+++.+.
T Consensus 3 ~~~C~t~rka~~~L~~~gi~-~~~~d~~ 29 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIE-YEFIDYK 29 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT---EEEEETT
T ss_pred CCCCHHHHHHHHHHHHcCCC-eEeehhh
Confidence 46899999999999999999 9987653
No 171
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=61.74 E-value=10 Score=33.86 Aligned_cols=68 Identities=4% Similarity=-0.087 Sum_probs=43.3
Q ss_pred CCceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 19 PTSLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 19 ~~~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
+..+++| ...||||..+.-+++..-+. ...+..++.++ ...+++........||.+..+|..+.+...
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~ 185 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDG-ALFQDEVEARNIMAVPTVFLNGEEFGQGRM 185 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEc-hhCHhHHHhcCCcccCEEEECCcEEEecCC
Confidence 4457777 66999999887777665554 33333333332 235566665566789999977777666333
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=58.49 E-value=23 Score=32.03 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=38.8
Q ss_pred CCceEEe-cCCCchHHHHHHHH----HhC-CCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeee
Q 048166 19 PTSLKFI-ARHHPAAQHECCSA----YEK-DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFN 85 (224)
Q Consensus 19 ~~~~~ly-~~~sp~~~~v~~~L----~~~-gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~e 85 (224)
+..+++| ++.||||-++.-++ .++ +|. .+.+.+.. .++....-....||+++.+|.++..
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~-~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVE-AEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCce-EEEEECcc------cHHHHHhCCceecCEEEECCEEEEe
Confidence 4457776 77999998765543 334 677 76665542 3455444556689999977766544
No 173
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=58.46 E-value=12 Score=27.80 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=31.0
Q ss_pred ceEEec--CCCchHH-------HHHHHHHhCCCCcccccccccCCCCCCCcchhh
Q 048166 21 SLKFIA--RHHPAAQ-------HECCSAYEKDIDEYELPPVDIVNGAHMHQPYLS 66 (224)
Q Consensus 21 ~~~ly~--~~sp~~~-------~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~ 66 (224)
-+.||+ .|||-|| +..=.+...+-+ ++++.|+....+..-.+|..
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~-fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAP-FEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHHhcCCc-eEEEEEecCCCHHHHHHHHH
Confidence 467785 4999887 455567777889 99999998765433344443
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=57.21 E-value=13 Score=33.09 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=44.6
Q ss_pred CCceEEe-cCCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 19 PTSLKFI-ARHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 19 ~~~~~ly-~~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
+..+++| ...||||-.+.-+++..-+. .-.+..++.++. ..+++........||.+..+|..+.+...
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-~p~i~~~~id~~-~~~~~~~~~~v~~VP~~~i~~~~~~~g~~ 186 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALL-NPNISHTMIDGA-LFQDEVEALGIQGVPAVFLNGEEFHNGRM 186 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHh-CCCceEEEEEch-hCHHHHHhcCCcccCEEEECCcEEEecCC
Confidence 4457777 67999999888777766655 444444444332 34555555556699999977777766444
No 175
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=55.39 E-value=42 Score=23.08 Aligned_cols=58 Identities=9% Similarity=-0.078 Sum_probs=34.5
Q ss_pred EEecCCCchHHHHHHHHHhCCCC--cccccccccCCCCCCCcchhhcCCCCccceEE--eCCeeee
Q 048166 23 KFIARHHPAAQHECCSAYEKDID--EYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTLF 84 (224)
Q Consensus 23 ~ly~~~sp~~~~v~~~L~~~gi~--~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l~ 84 (224)
.+|.++|+.|+.+.-.+...--. ...+..|+.. +.+++.+...-..+|++. .+|..+.
T Consensus 28 ~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 28 HFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 34567999999887666542211 0233444433 234455556667899997 5776654
No 176
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=46.92 E-value=58 Score=22.16 Aligned_cols=57 Identities=11% Similarity=-0.028 Sum_probs=31.0
Q ss_pred eEEecCCCchHHHHHHHHHh-----CCCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 22 LKFIARHHPAAQHECCSAYE-----KDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~-----~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+.+|.+||+.|+...-.+.. .+.. ..+..++... .+.......-..+|++. .+|..+
T Consensus 29 V~F~a~wC~~C~~~~p~~~~l~~~~~~~~-v~~~~vd~d~----~~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 29 IKITSDWCFSCIHIEPVWKEVIQELEPLG-VGIATVNAGH----ERRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEECCccHhHHHhhHHHHHHHHHHHhcC-ceEEEEeccc----cHHHHHHcCCccCCEEEEEECCEEE
Confidence 44456799999866544322 2223 3334444332 23444445567889886 566543
No 177
>PTZ00051 thioredoxin; Provisional
Probab=45.84 E-value=54 Score=21.33 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=30.2
Q ss_pred EEecCCCchHHHHHHHHHhCCCC--cccccccccCCCCCCCcchhhcCCCCccceEE--eCCee
Q 048166 23 KFIARHHPAAQHECCSAYEKDID--EYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDT 82 (224)
Q Consensus 23 ~ly~~~sp~~~~v~~~L~~~gi~--~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~ 82 (224)
.+|.++|+.|++..-.+....-. ++.+..++.. ....+........+|+++ .+|..
T Consensus 24 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 24 DFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 34567999999886655542111 0223334432 233444444556789886 45544
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=44.70 E-value=34 Score=23.53 Aligned_cols=53 Identities=8% Similarity=-0.177 Sum_probs=32.5
Q ss_pred CceEEe-c-CCCchHHHHHHHHHhCCCCcc---cccccccCCCCCCCcchhhcCCCCccceEE
Q 048166 20 TSLKFI-A-RHHPAAQHECCSAYEKDIDEY---ELPPVDIVNGAHMHQPYLSLNPFGLMLAME 77 (224)
Q Consensus 20 ~~~~ly-~-~~sp~~~~v~~~L~~~gi~~~---~~~~v~~~~~~~~~~~~~~~np~g~vP~L~ 77 (224)
..+.++ + +|||+|+.++-.|....-. + ++..++.. ..+++...-....+|++.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~-~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSEL-SDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHh-cCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 345555 3 5999999888777755432 2 33334432 245555555567899997
No 179
>PHA02278 thioredoxin-like protein
Probab=44.11 E-value=93 Score=21.07 Aligned_cols=60 Identities=7% Similarity=-0.062 Sum_probs=31.3
Q ss_pred EEecCCCchHHHHHHHHHhC----CCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 23 KFIARHHPAAQHECCSAYEK----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 23 ~ly~~~sp~~~~v~~~L~~~----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
-+|.+||+.|+.+.=.+... +.. ..+..++........+++....--..+|++. .+|..+
T Consensus 20 ~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 20 MITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 33467999999776544432 222 2234444332110123444444456789997 467654
No 180
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=42.98 E-value=76 Score=21.97 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=30.0
Q ss_pred eEEecCCCchHHHHHHHHHhC------CCCcccccccccCCCCCCCcchhhcCCCC-ccceEE--e-CCeeee
Q 048166 22 LKFIARHHPAAQHECCSAYEK------DIDEYELPPVDIVNGAHMHQPYLSLNPFG-LMLAME--D-GGDTLF 84 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~------gi~~~~~~~v~~~~~~~~~~~~~~~np~g-~vP~L~--~-~g~~l~ 84 (224)
+-+|.+||++|++..-.+... +.. |.. +++.... .+.-...+..| .+|++. + +|.++.
T Consensus 24 V~F~a~WC~~C~~~~~~~~~~~~~~~~~~~-fv~--v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 24 LLIHKTWCGACKALKPKFAESKEISELSHN-FVM--VNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEeCCcCHHHHHHHHHHhhhHHHHhhcCc-EEE--EEecCCC--CchhhhcccCCCccceEEEECCCCCCch
Confidence 344567999999886555542 223 433 3333221 11112334444 489986 3 566543
No 181
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=39.89 E-value=46 Score=21.60 Aligned_cols=57 Identities=9% Similarity=-0.067 Sum_probs=32.4
Q ss_pred eEEecCCCchHHHHHHHHHhC----CCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 22 LKFIARHHPAAQHECCSAYEK----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+.+|.++|+.|++..-.|... ... +.+..++.. ..+++........+|++. .+|..+
T Consensus 19 v~f~~~~C~~C~~~~~~l~~l~~~~~~~-i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 19 LHFWAPWAEPCKQMNQVFEELAKEAFPS-VLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCc-eEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 344567999999887666542 233 445555432 233443333345689886 566554
No 182
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=39.52 E-value=34 Score=22.51 Aligned_cols=58 Identities=14% Similarity=0.010 Sum_probs=28.4
Q ss_pred eEEecCCCchHHHHHHHH----HhCC--CCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCee
Q 048166 22 LKFIARHHPAAQHECCSA----YEKD--IDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDT 82 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L----~~~g--i~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~ 82 (224)
+.+|.++|+.|++..=.+ .... -. +....++... ...+.+.....-..+|.++ .+|..
T Consensus 22 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGK-GVLAAVDCTK--PEHDALKEEYNVKGFPTFKYFENGKF 87 (104)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhhCCc-eEEEEEECCC--CccHHHHHhCCCccccEEEEEeCCCe
Confidence 344567999999774222 1111 22 3333333322 1234444433445689886 34543
No 183
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=38.25 E-value=1.1e+02 Score=19.73 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=34.1
Q ss_pred EEecCCCchHHHHHHHHHh-----CCCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 23 KFIARHHPAAQHECCSAYE-----KDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 23 ~ly~~~sp~~~~v~~~L~~-----~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
.+|.++|+.|+...=.+.. .+ . +.+..++.. ..+++........+|++. .+|...
T Consensus 23 ~f~~~~C~~C~~~~~~~~~~~~~~~~-~-v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 23 YFYAPWCPPCKAFKPILEKLAKEYKD-N-VKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp EEESTTSHHHHHHHHHHHHHHHHTTT-T-SEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred EEeCCCCCccccccceeccccccccc-c-cccchhhhh----ccchhhhccCCCCCCEEEEEECCcEE
Confidence 3346799999988744433 32 4 555555543 245565656677899997 566554
No 184
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=37.98 E-value=1.4e+02 Score=20.85 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=10.9
Q ss_pred cCCCchHHHHHHHHH
Q 048166 26 ARHHPAAQHECCSAY 40 (224)
Q Consensus 26 ~~~sp~~~~v~~~L~ 40 (224)
.++||+|+.+.=.|.
T Consensus 32 ~~~Cp~C~~~~P~l~ 46 (122)
T TIGR01295 32 RKTCPYCRKFSGTLS 46 (122)
T ss_pred CCCChhHHHHhHHHH
Confidence 469999998654444
No 185
>PRK09381 trxA thioredoxin; Provisional
Probab=37.80 E-value=53 Score=21.98 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=32.2
Q ss_pred eEEecCCCchHHHHHHHHHh----CCCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 22 LKFIARHHPAAQHECCSAYE----KDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~----~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+.+|.++||.|+...-.+.. .+-. +.+..++... .+.+........+|++. .+|..+
T Consensus 26 v~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 26 VDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 44456799999987644432 2223 4455555433 23333334456789886 466554
No 186
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=37.67 E-value=79 Score=23.25 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=31.7
Q ss_pred ceEEecCCCchHHHHHHHHHhC-----CCCcccccccccCCCCCCCcchhhcCCC------CccceEE--eCCeeee
Q 048166 21 SLKFIARHHPAAQHECCSAYEK-----DIDEYELPPVDIVNGAHMHQPYLSLNPF------GLMLAME--DGGDTLF 84 (224)
Q Consensus 21 ~~~ly~~~sp~~~~v~~~L~~~-----gi~~~~~~~v~~~~~~~~~~~~~~~np~------g~vP~L~--~~g~~l~ 84 (224)
.+.+|.+|||.|+...-.+... +-. +.+..|+... .++..+..-- +.+|++. .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~-v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNN-LKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCC-eEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 3445677999999776444332 223 4455555443 2333322222 3489886 5665543
No 187
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=34.23 E-value=68 Score=20.74 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=28.5
Q ss_pred ceeecCCCchhhhhhHhHHHHhhhCcccccCCCChhHHHHHHHhh
Q 048166 169 KYLAGDDCTMADMQYIPCLVYFMRTPKAAAVTPRPCANAWWNDIA 213 (224)
Q Consensus 169 ~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~w~~r~~ 213 (224)
+|+. .+++ |+..++.+.++....+....++--++..|++++.
T Consensus 35 ky~t--~l~~-DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 35 KYFT--DLGY-DVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred hhcc--hhhH-HHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 4552 2443 7788888888875444445566678999999875
No 188
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=32.24 E-value=55 Score=21.80 Aligned_cols=56 Identities=4% Similarity=-0.110 Sum_probs=28.9
Q ss_pred eEEecCCCchHHHHHHHHHhCCCC----cccccccccCCCCCCCcchhhcCCCCccceEE--eCCee
Q 048166 22 LKFIARHHPAAQHECCSAYEKDID----EYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDT 82 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~----~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~ 82 (224)
+.+|.+||+.|+...-.+...--. ...+..++.. .++..+..--..+|++. .+|..
T Consensus 22 v~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 22 VDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEE
Confidence 344567999999876555432111 0223333322 22333444456678875 46654
No 189
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=31.27 E-value=87 Score=22.13 Aligned_cols=61 Identities=10% Similarity=-0.047 Sum_probs=31.4
Q ss_pred ecCCCchHHHHHH-HHHh------CCCCcccccccccCCCCCCCcchhh----cCCCCccceEE---eCCeeeeec
Q 048166 25 IARHHPAAQHECC-SAYE------KDIDEYELPPVDIVNGAHMHQPYLS----LNPFGLMLAME---DGGDTLFNQ 86 (224)
Q Consensus 25 y~~~sp~~~~v~~-~L~~------~gi~~~~~~~v~~~~~~~~~~~~~~----~np~g~vP~L~---~~g~~l~eS 86 (224)
+..+|++|++..- .+.. ..=. |..+.++..........+.+ .+..+-+|+++ .+|..|..+
T Consensus 23 ~a~WC~~Ck~me~~~f~~~~V~~~l~~~-fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 23 GYSTCHWCHVMEHESFEDEEVAAILNEN-FVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred ccCCCHhHHHHHHHccCCHHHHHHHhCC-EEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3569999997742 2222 2235 66666665432111111211 12344578886 357777665
No 190
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=30.26 E-value=77 Score=21.56 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=30.7
Q ss_pred eEEecCCCchHHHHHHHHHhCCCCcc---cccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 22 LKFIARHHPAAQHECCSAYEKDIDEY---ELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~~~---~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+.+|.++|+.|+.+.-.++...-. | .+..++... . ++.+..--..+|++. .+|..+
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~-~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAK-YPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEE
Confidence 344567999999876666543222 3 223343221 1 333334446789987 466554
No 191
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.56 E-value=87 Score=24.74 Aligned_cols=67 Identities=6% Similarity=0.031 Sum_probs=47.7
Q ss_pred CCceEEe--c----CCCchHHHHHHHHHhCCCCcccccccccCCCCCCCcchhhcCCCCccceEEeCCeeeeecHH
Q 048166 19 PTSLKFI--A----RHHPAAQHECCSAYEKDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAMEDGGDTLFNQGP 88 (224)
Q Consensus 19 ~~~~~ly--~----~~sp~~~~v~~~L~~~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~~~g~~l~eS~a 88 (224)
..++.|| + +.|++++++.-.|+..|++ |+...|-.. +.-.....+.+-..+.|-|=.+|+.+-+..-
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~-~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDI 210 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVN-YTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDI 210 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHcCCC-eeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHH
Confidence 4456665 2 5899999999999999999 998876422 1122223345667889998888888776665
No 192
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=29.43 E-value=1.7e+02 Score=20.57 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=30.2
Q ss_pred CCCchHHHHHHHHH----hCCCCcccccccccCCCC---CCCcchhhcCCCC-ccceEE--eCCeeeeecH
Q 048166 27 RHHPAAQHECCSAY----EKDIDEYELPPVDIVNGA---HMHQPYLSLNPFG-LMLAME--DGGDTLFNQG 87 (224)
Q Consensus 27 ~~sp~~~~v~~~L~----~~gi~~~~~~~v~~~~~~---~~~~~~~~~np~g-~vP~L~--~~g~~l~eS~ 87 (224)
+|||.|+.+.-.++ ...-. +.+..|+..... ....++....-.. .+|++. .+|..|.|..
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPED-CVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecchh
Confidence 79999997754443 33222 344555543211 1123443322223 689997 4555554443
No 193
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=28.23 E-value=66 Score=22.45 Aligned_cols=55 Identities=11% Similarity=-0.076 Sum_probs=31.9
Q ss_pred EecCCCchHHHHHHHHHhCCCCcc----cccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 24 FIARHHPAAQHECCSAYEKDIDEY----ELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 24 ly~~~sp~~~~v~~~L~~~gi~~~----~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+|..||+.|+.+.=.+...--. | .+..|+.. ..+++....--..+|++. .+|..+
T Consensus 21 F~A~WCgpCk~m~P~le~la~~-~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 21 FGRDWDPVCMQMDEVLAKIAED-VSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EECCCChhHHHHHHHHHHHHHH-ccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 3457999999876666443333 3 23344433 244555555556689986 466553
No 194
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=27.80 E-value=50 Score=22.07 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=14.6
Q ss_pred ceEEecCCCchHHHHHHHHHh
Q 048166 21 SLKFIARHHPAAQHECCSAYE 41 (224)
Q Consensus 21 ~~~ly~~~sp~~~~v~~~L~~ 41 (224)
.+.+|.+||+.|++..-.+..
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~ 42 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNA 42 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHH
Confidence 344456799999988755544
No 195
>PRK10996 thioredoxin 2; Provisional
Probab=27.53 E-value=94 Score=22.21 Aligned_cols=56 Identities=7% Similarity=0.006 Sum_probs=32.1
Q ss_pred EEecCCCchHHHHHHHHHh----CCCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 23 KFIARHHPAAQHECCSAYE----KDIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 23 ~ly~~~sp~~~~v~~~L~~----~gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
.+|.+||+.|+...-.+.. .+-. +.+..++.. ..+++....--..+|++. .+|..+
T Consensus 58 ~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 58 DFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 3346799999976544433 2223 444445543 234555444456789886 566654
No 196
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=27.50 E-value=1.4e+02 Score=20.46 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=11.4
Q ss_pred eEEecCCCchHHHHHH
Q 048166 22 LKFIARHHPAAQHECC 37 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~ 37 (224)
+.+|.++|++|++..-
T Consensus 19 v~f~a~wC~~C~~~~~ 34 (125)
T cd02951 19 LLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 3344679999998753
No 197
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=27.46 E-value=80 Score=21.08 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=30.7
Q ss_pred eEEecCCCchHHHHHHHHHhCCCC--cccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 22 LKFIARHHPAAQHECCSAYEKDID--EYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~--~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
+.+|.+||+.|+...=.+....-. ...+..++..... ...++.+...-..+|++. .+|..+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 344567999999776555432112 0333444432210 112444444445688886 466543
No 198
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=26.37 E-value=61 Score=20.89 Aligned_cols=56 Identities=7% Similarity=0.010 Sum_probs=29.8
Q ss_pred eEEecCCCchHHHHHHHHHhC----CCCcccccccccCCCCCCCcchhhcCCCCccceEE--eCCee
Q 048166 22 LKFIARHHPAAQHECCSAYEK----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDT 82 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~ 82 (224)
+.+|.++|+.|+...-.+... +-. ..+..++... .+++....-...+|++. .+|..
T Consensus 19 i~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~----~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 19 VDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE----NPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC----CHHHHHHcCCCcCCEEEEEeCCcE
Confidence 334567999999876544432 222 3444444332 33343333345789886 45544
No 199
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.22 E-value=1.3e+02 Score=22.66 Aligned_cols=56 Identities=9% Similarity=0.010 Sum_probs=30.8
Q ss_pred EEecCCCchHHHHHHHHHhCCCC--cccccccccCCCCCCCcchhhcCCCCccceEE--eCCeee
Q 048166 23 KFIARHHPAAQHECCSAYEKDID--EYELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGDTL 83 (224)
Q Consensus 23 ~ly~~~sp~~~~v~~~L~~~gi~--~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~~l 83 (224)
.+|.++|+.|+.+--.|..+--. .+.+..|+... . +.....+...+|+|. -+|..+
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEE
Confidence 34567999998765444332222 13344444321 1 344455667899997 466654
No 200
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=23.06 E-value=70 Score=19.60 Aligned_cols=15 Identities=0% Similarity=-0.040 Sum_probs=13.0
Q ss_pred CCCchHHHHHHHHHh
Q 048166 27 RHHPAAQHECCSAYE 41 (224)
Q Consensus 27 ~~sp~~~~v~~~L~~ 41 (224)
..|.||+||-.+|..
T Consensus 13 DDssFChrvta~LN~ 27 (70)
T COG5515 13 DDSSFCHRVTAALNK 27 (70)
T ss_pred chHHHHHHHHHHHhC
Confidence 389999999999874
No 201
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=21.89 E-value=96 Score=20.30 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=27.7
Q ss_pred eEEecCCCchHHHHHHHHHhC-----CCCcccccccccCCCCCCCcchhhcCCCCccceEE
Q 048166 22 LKFIARHHPAAQHECCSAYEK-----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME 77 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~-----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~ 77 (224)
+.+|.+||+.|+...=.+... +.. +.+..++... .+.+.....-..+|++.
T Consensus 21 v~f~a~wC~~C~~~~p~~~~l~~~~~~~~-v~~~~vd~~~----~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 21 IEFYAPWCPACQQLQPEWEEFADWSDDLG-INVAKVDVTQ----EPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHhhccCC-eEEEEEEccC----CHhHHHHcCCcccCEEE
Confidence 445677999999765444332 233 3444444332 23343334456678886
No 202
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=21.32 E-value=1.3e+02 Score=19.90 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=27.7
Q ss_pred eEEecCCCchHHHHHHHHHhC----CCCcccccccccCCCCCCCcchhhcCCCCccceEE
Q 048166 22 LKFIARHHPAAQHECCSAYEK----DIDEYELPPVDIVNGAHMHQPYLSLNPFGLMLAME 77 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~----gi~~~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~ 77 (224)
+.+|.++|+.|+...-.+... +-. +.+..++.... ...++.....-..+|++.
T Consensus 23 v~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~~--~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 23 VEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDED--KNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCcc--ccHHHHHHcCCCcCCEEE
Confidence 444567999999775444332 112 33344443321 133444444456789886
No 203
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=20.65 E-value=2.8e+02 Score=20.92 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-Cceee-cCCCchhhhhhHhHHHHh-hhC--cccccCCCChhHHHHHHHhhh
Q 048166 146 ITEAEMEKLGKVLDVCEERLSK-SKYLA-GDDCTMADMQYIPCLVYF-MRT--PKAAAVTPRPCANAWWNDIAS 214 (224)
Q Consensus 146 ~~~~~~~~~~~~l~~le~~L~~-~~~l~-G~~~t~AD~~~~~~l~~~-~~~--~~~~~~~~~p~l~~w~~r~~~ 214 (224)
..+...+.+.+.++.+++.+.. ..|+. |+.+..|-+.++=.+.+- ... .......-.|.+.+|++|++.
T Consensus 77 i~~~~v~~LE~~id~~~~~l~~l~~FiLPggs~~~A~lh~aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD 150 (171)
T TIGR00636 77 ITEEDVKWLEERIDQYRKELPPLKLFVLPGGTPAAAFLHVARTVARRAERRVVALLKEEEINEVVLVYLNRLSD 150 (171)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 4455566777778888877865 56777 777776666655444322 111 001111235788899999875
No 204
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=20.62 E-value=1e+02 Score=20.21 Aligned_cols=56 Identities=7% Similarity=0.005 Sum_probs=29.9
Q ss_pred eEEecCCCchHHHHHHHHHhCCCC--c-ccccccccCCCCCCCcchhhcCCCCccceEE--eCCe
Q 048166 22 LKFIARHHPAAQHECCSAYEKDID--E-YELPPVDIVNGAHMHQPYLSLNPFGLMLAME--DGGD 81 (224)
Q Consensus 22 ~~ly~~~sp~~~~v~~~L~~~gi~--~-~~~~~v~~~~~~~~~~~~~~~np~g~vP~L~--~~g~ 81 (224)
+.+|.+||+.|+...-.+....-. . +.+..++... .+.+.+...-..+|++. .+|.
T Consensus 23 v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 23 VNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEEEEcCCC
Confidence 344567999999776555443322 0 3334444432 23343333446789885 4454
No 205
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=20.57 E-value=1e+02 Score=18.58 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCceeecCCC-chhhhh
Q 048166 155 GKVLDVCEERLSKSKYLAGDDC-TMADMQ 182 (224)
Q Consensus 155 ~~~l~~le~~L~~~~~l~G~~~-t~AD~~ 182 (224)
.++.+.|.+.+..+.|-.|+.+ |.++++
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la 31 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELA 31 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHH
Confidence 3556677777777788889988 888876
Done!