BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048169
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 24 ESIELLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPAT 83
+I + +YD L A +S + + + V ++ ++S+ A W+R V+ ++P+
Sbjct: 25 NNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRRNVVAYWPSV 84
Query: 84 KITTIVVGNNLFCQKQQDHNLGLILPSLKNMYHSLKRWGLENEIKVSPAFSS----SCFI 139
I VGN L ILP+++N+Y++L GL+N+IKVS A + + +
Sbjct: 85 SFRYIAVGNELIPGSDLAQ---YILPAMRNIYNALSSAGLQNQIKVSTAVDTGVLGTSYP 141
Query: 140 PDLTLFRDDLIKQVIKPLLQFLHT 163
P F + + P++QFL +
Sbjct: 142 PSAGAF-SSAAQAYLSPIVQFLAS 164
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 25 SIELLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATK 84
+I+ + +Y + A S + + + V ++L+ +++ A W++ + H+P K
Sbjct: 28 NIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALANPS-NANGWVQDNIRNHFPDVK 86
Query: 85 ITTIVVGNNLFCQKQQDHNLGLILPSLKNMYHSLKRWGLENEIKVSPAFSS----SCFIP 140
I VGN + ++ + P+++N+Y++L GL+N+IKVS + S + + P
Sbjct: 87 FKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVSTSTYSGLLTNTYPP 146
Query: 141 DLTLFRDDLIKQVIKPLLQFLHTAN 165
++FR++ K I P++ FL N
Sbjct: 147 RDSIFREEY-KSFINPIIGFLARHN 170
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Query: 23 QESIELLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPA 82
+ +I + +YD +L A S + L + V +L +++ A+SW++ V + +
Sbjct: 25 KSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQSLTNPS-NAKSWVQKNVRGFWSS 83
Query: 83 TKITTIVVGNNLFCQKQQDHNLG-LILPSLKNMYHSLKRWGLENEIKVSPAFS----SSC 137
+ I VGN + + L +LP+++N++ +++ GL+++IKVS A +
Sbjct: 84 VRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNS 143
Query: 138 FIPDLTLFRDDLIKQVIKPLLQFLHTANS 166
+ P FRDD ++ + P+++FL + S
Sbjct: 144 YPPSAGAFRDD-VRSYLNPIIRFLSSIRS 171
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 25 SIELLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATK 84
+I+ + +Y + A S + + + V ++L+ +++ A W++ + H+P K
Sbjct: 28 NIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALANPS-NANGWVQDNIRNHFPDVK 86
Query: 85 ITTIVVGNNLFCQKQQDHNLGLILPSLKNMYHSLKRWGLENEIKVSPAFSS----SCFIP 140
I VGN + ++ + P+++N+Y++L GL+N+IKVS + S + + P
Sbjct: 87 FKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVSTSTYSGLLTNTYPP 146
Query: 141 DLTLFRDDLIKQVIKPLLQFLHTAN 165
++FR++ K I P++ FL N
Sbjct: 147 RDSIFREEY-KSFINPIIGFLARHN 170
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 24 ESIELLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPAT 83
+ I + +Y + + L A +SG+ L + + L I++S A SW++ V P+YPA
Sbjct: 25 KGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAV 84
Query: 84 KITTIVVGNNLFCQKQQDHNLGLILPSLKNMYHSLKRWGLENEIKVSPAFS----SSCFI 139
I I GN + Q ILP+++N+ ++ IKVS + ++ F
Sbjct: 85 NIKYIAAGNEVQGGATQS-----ILPAMRNL-NAALSAAGLGAIKVSTSIRFDEVANSFP 138
Query: 140 PDLTLFRDDLIKQVIKPL 157
P +F++ + V + L
Sbjct: 139 PSAGVFKNAYMTDVARLL 156
>pdb|3L7V|A Chain A, Crystal Structure Of A Hypothetical Protein Smu.1377c From
Streptococcus Mutans Ua159
Length = 295
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 93 NLFCQKQQDHN--LGLILPSLKNMYHSLKRWGLENEIKVSPAFSSSCFIPDLTLFRDDLI 150
+ F QK D + LG ILP Y LK +G E + +SCF+ + + +
Sbjct: 114 DAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELXTDIRGTSCFVIKFGVAGEQIA 173
Query: 151 KQ 152
K+
Sbjct: 174 KE 175
>pdb|3V4Y|B Chain B, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|D Chain D, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|F Chain F, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|H Chain H, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
Length = 62
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 195 KKLGFLTVNKINVLIQNPKGTKPTSRKLSAEVIDTKIINP 234
K++ LT+ + N+ IQ PK + SR +E D +IINP
Sbjct: 21 KRISTLTIEEGNLDIQRPKRKRKNSRVTFSE--DDEIINP 58
>pdb|1Q9J|A Chain A, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
pdb|1Q9J|B Chain B, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
Length = 422
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 17 GFTGAGQESIELLYVYDSTPELLPAA-SHSGLPLAVPVSEKNLDEISSSVIMA 68
G +GA + + ++Y Y+ PA +H GLP AVPV+ L + +S +MA
Sbjct: 177 GLSGA-ERFMSVMYAYEIPATETPAVLAHPGLPQAVPVTRLWLSKQQTSDLMA 228
>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|B Chain B, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|C Chain C, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|3B71|A Chain A, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
pdb|3B71|B Chain B, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
pdb|3B71|C Chain C, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
Length = 162
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 28 LLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKITT 87
LL D T LLPA++H + +A + +L E+ + + +A+ ++ T + Y +T
Sbjct: 74 LLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKKQMLTA 133
>pdb|1K40|A Chain A, Crystal Structure Of The Fat Domain Of Focal Adhesion
Kinase
Length = 126
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 28 LLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKITT 87
LL D T LPA++H + +A + +L E+ S + +A+ ++ T + Y +T
Sbjct: 44 LLATVDETIPALPASTHREIEMAQKLLNSDLGELISKMKLAQQYVMTSLQQEYKKQMLTA 103
>pdb|1OW6|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW6|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW6|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|A Chain A, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|B Chain B, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|C Chain C, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
Length = 161
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 28 LLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKIT 86
LL D T LLPA++H + +A + +L E+ + + +A+ ++ T + Y +T
Sbjct: 73 LLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKKQMLT 131
>pdb|3S9O|A Chain A, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
pdb|3S9O|B Chain B, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
pdb|3S9O|C Chain C, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
Length = 164
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 28 LLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKITT 87
LL D T LLPA++H + +A + +L E+ + + +A+ ++ T + Y +T
Sbjct: 76 LLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKKQMLTA 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,212,931
Number of Sequences: 62578
Number of extensions: 269289
Number of successful extensions: 574
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 15
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)