Query 048169
Match_columns 275
No_of_seqs 154 out of 692
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1E-53 2.2E-58 400.2 8.3 208 20-240 21-270 (310)
2 COG5309 Exo-beta-1,3-glucanase 97.7 0.00012 2.6E-09 69.2 8.3 162 18-210 69-237 (305)
3 PF03198 Glyco_hydro_72: Gluca 93.6 0.083 1.8E-06 50.9 4.2 142 18-176 59-217 (314)
4 PF00332 Glyco_hydro_17: Glyco 75.6 2.9 6.4E-05 39.9 3.5 89 106-204 207-302 (310)
5 PF07745 Glyco_hydro_53: Glyco 71.5 42 0.00091 32.7 10.3 158 18-199 30-226 (332)
6 PF00150 Cellulase: Cellulase 69.8 24 0.00051 31.1 7.7 113 19-131 28-172 (281)
7 COG4669 EscJ Type III secretor 58.0 15 0.00033 34.6 4.3 50 19-86 38-87 (246)
8 KOG1462 Translation initiation 43.0 57 0.0012 33.0 5.8 111 39-184 47-158 (433)
9 KOG1532 GTPase XAB1, interacts 41.1 38 0.00082 33.3 4.2 51 152-203 34-88 (366)
10 KOG1533 Predicted GTPase [Gene 38.8 59 0.0013 31.2 5.0 59 139-204 10-72 (290)
11 PF04239 DUF421: Protein of un 38.4 29 0.00064 27.7 2.6 39 184-222 26-64 (99)
12 PRK11205 tbpA thiamine transpo 38.0 31 0.00066 32.0 3.0 45 7-53 5-59 (330)
13 TIGR00505 ribA GTP cyclohydrol 37.1 19 0.00041 31.9 1.4 36 17-52 130-165 (191)
14 cd02875 GH18_chitobiase Chitob 36.6 1E+02 0.0023 29.7 6.5 100 24-131 54-158 (358)
15 PRK00393 ribA GTP cyclohydrola 36.2 20 0.00044 32.0 1.5 36 18-53 134-169 (197)
16 TIGR02052 MerP mercuric transp 34.3 25 0.00054 24.9 1.5 20 1-20 1-20 (92)
17 PF13956 Ibs_toxin: Toxin Ibs, 33.9 22 0.00048 21.0 0.9 15 1-15 1-16 (19)
18 PHA02691 hypothetical protein; 33.4 23 0.0005 29.6 1.3 18 4-21 1-19 (110)
19 PF06722 DUF1205: Protein of u 33.3 26 0.00056 28.1 1.5 28 36-63 64-91 (97)
20 PRK00124 hypothetical protein; 33.1 28 0.00061 30.4 1.8 92 29-123 1-120 (151)
21 PF07799 DUF1643: Protein of u 32.1 51 0.0011 27.1 3.2 38 138-178 21-60 (136)
22 cd06156 eu_AANH_C_2 A group of 30.9 53 0.0012 26.8 3.0 28 104-131 32-59 (118)
23 PHA01735 hypothetical protein 30.2 31 0.00067 27.0 1.4 25 63-95 33-57 (76)
24 cd06150 YjgF_YER057c_UK114_lik 28.8 84 0.0018 24.6 3.8 44 87-131 6-57 (105)
25 cd00641 GTP_cyclohydro2 GTP cy 28.4 32 0.00068 30.5 1.4 37 17-53 132-168 (193)
26 smart00636 Glyco_18 Glycosyl h 28.1 2.8E+02 0.0061 25.7 7.7 80 39-121 57-142 (334)
27 PRK15346 outer membrane secret 27.8 71 0.0015 32.4 3.9 95 1-95 1-105 (499)
28 PF00135 COesterase: Carboxyle 27.1 31 0.00067 33.4 1.2 18 64-81 188-205 (535)
29 PF10671 TcpQ: Toxin co-regula 26.7 82 0.0018 24.1 3.3 58 114-174 12-71 (84)
30 PLN03207 stomagen; Provisional 25.6 37 0.0008 28.2 1.2 35 3-37 9-43 (113)
31 PF08105 Antimicrobial10: Metc 24.8 57 0.0012 23.8 1.9 36 2-37 3-39 (52)
32 PF03801 Ndc80_HEC: HEC/Ndc80p 24.3 1.9E+02 0.0042 24.9 5.5 72 105-201 36-108 (157)
33 PRK14459 ribosomal RNA large s 24.1 5.2E+02 0.011 25.7 9.0 65 152-219 266-330 (373)
34 KOG4306 Glycosylphosphatidylin 23.2 1.3E+02 0.0029 29.3 4.6 91 143-245 103-195 (306)
35 KOG0093 GTPase Rab3, small G p 21.2 97 0.0021 27.9 3.0 91 19-124 62-159 (193)
36 COG1671 Uncharacterized protei 21.1 69 0.0015 28.2 2.1 91 29-124 2-120 (150)
37 PF13396 PLDc_N: Phospholipase 20.9 67 0.0015 21.6 1.6 20 2-21 21-40 (46)
38 PRK09311 bifunctional 3,4-dihy 20.9 65 0.0014 32.2 2.1 37 17-53 338-374 (402)
39 PF03029 ATP_bind_1: Conserved 20.4 98 0.0021 28.2 3.0 51 152-203 11-65 (238)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1e-53 Score=400.21 Aligned_cols=208 Identities=31% Similarity=0.533 Sum_probs=171.5
Q ss_pred cccccCCCeEEeecCChhhhhhccCCCccEEeecCccchHhhhcChHHHHHHHHhhccCCCCCccEEEEeecccccccCC
Q 048169 20 GAGQESIELLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKITTIVVGNNLFCQKQ 99 (275)
Q Consensus 20 ~~ks~~I~~VRLyDad~~vL~AlagTgI~V~VgVpN~~L~~lAss~~aA~~WV~~NV~py~P~t~I~~IaVGNEVl~~~~ 99 (275)
++|+++|++|||||+|+++|+||+||||+|+|+|||++|+++|+++.+|..||++||.||+|+|+|++|+||||++++..
T Consensus 21 l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~~ 100 (310)
T PF00332_consen 21 LLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGTD 100 (310)
T ss_dssp HHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCSG
T ss_pred HHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcccccCcccceeeeecccccccCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CcccchhhHHHHHHHHHHHHhcCCCCceEEecCccCCC----CCCCccccchhhhhhhHHHHHHHHhhcCCceEecCCCC
Q 048169 100 QDHNLGLILPSLKNMYHSLKRWGLENEIKVSPAFSSSC----FIPDLTLFRDDLIKQVIKPLLQFLHTANSTYSIIPPPK 175 (275)
Q Consensus 100 ~~~~~~~LvPAM~NI~~AL~~~GL~~~IKVST~~s~~v----yPPSaG~F~~d~~~~vm~piL~FL~~tgSPfmVNvYPy 175 (275)
...|||||+|+|+||+++||+++|||||+|++++ ||||+|.|++++. .+|+|+++||++||||||+|+|||
T Consensus 101 ----~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~~~l~fL~~t~spf~vN~yPy 175 (310)
T PF00332_consen 101 ----NAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMDPLLKFLDGTNSPFMVNVYPY 175 (310)
T ss_dssp ----GGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHHHHHHHHHHHT--EEEE--HH
T ss_pred ----ceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhhHHHHHhhccCCCceeccchh
Confidence 2279999999999999999999999999999999 9999999999998 899999999999999999999999
Q ss_pred CccCCCCCccc--------------------------cchHHHHHHHhCCCCCCeeEEEecC------------CCCCcc
Q 048169 176 LSPLSDKTTIF--------------------------ASSYLESMKKLGFLTVNKINVLIQN------------PKGTKP 217 (275)
Q Consensus 176 Fay~~np~~i~--------------------------lD~~~~amkk~G~~~~n~in~~~~~------------~~~~~~ 217 (275)
|+|.+||..++ +|.++.+|+|+|+.+ +.|+|+| .+.+++
T Consensus 176 fa~~~~~~~~~l~yAlf~~~~~~~D~~~~y~nlfDa~~da~~~a~~~~g~~~---~~vvv~ETGWPs~G~~~a~~~nA~~ 252 (310)
T PF00332_consen 176 FAYQNNPQNISLDYALFQPNSGVVDGGLAYTNLFDAMVDAVYAAMEKLGFPN---VPVVVGETGWPSAGDPGATPENAQA 252 (310)
T ss_dssp HHHHHSTTTS-HHHHTT-SSS-SEETTEEESSHHHHHHHHHHHHHHTTT-TT-----EEEEEE---SSSSTTCSHHHHHH
T ss_pred hhccCCcccCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHhCCCC---ceeEEeccccccCCCCCCCcchhHH
Confidence 99999988873 566679999999976 8999981 122578
Q ss_pred cccchhhhhhccccCCCCCCCCC
Q 048169 218 TSRKLSAEVIDTKIINPYPARPT 240 (275)
Q Consensus 218 ~~r~l~~~~~~~~~~~~~p~~p~ 240 (275)
++++|++.+. ..+|.||.
T Consensus 253 ~~~nl~~~~~-----~gt~~~~~ 270 (310)
T PF00332_consen 253 YNQNLIKHVL-----KGTPLRPG 270 (310)
T ss_dssp HHHHHHHHCC-----GBBSSSBS
T ss_pred HHHHHHHHHh-----CCCcccCC
Confidence 8899985554 56777775
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00012 Score=69.16 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=106.5
Q ss_pred cccccccCCCeEEeecCC----hhhhhhccCCCccEEeecCc-cchHhhhcChHHHHHHHHhhccCCCCCccEEEEeecc
Q 048169 18 FTGAGQESIELLYVYDST----PELLPAASHSGLPLAVPVSE-KNLDEISSSVIMAESWLRTYVLPHYPATKITTIVVGN 92 (275)
Q Consensus 18 ~~~~ks~~I~~VRLyDad----~~vL~AlagTgI~V~VgVpN-~~L~~lAss~~aA~~WV~~NV~py~P~t~I~~IaVGN 92 (275)
|+++++..+ .||+|..| ..++.|....|+.|.+||=- +++. .+.+.=....+++|..--.++.|.|||
T Consensus 69 Le~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~------~~~~~til~ay~~~~~~d~v~~v~VGn 141 (305)
T COG5309 69 LELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH------DAVEKTILSAYLPYNGWDDVTTVTVGN 141 (305)
T ss_pred HHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh------hhHHHHHHHHHhccCCCCceEEEEech
Confidence 456677777 99999766 47888999999999999843 3333 222223344577777777899999999
Q ss_pred cccccCCCcccchhhHHHHHHHHHHHHhcCCCCceEEecCccCCCCCCCccccchhhhhhhHHHHHHHHhhcCCceEecC
Q 048169 93 NLFCQKQQDHNLGLILPSLKNMYHSLKRWGLENEIKVSPAFSSSCFIPDLTLFRDDLIKQVIKPLLQFLHTANSTYSIIP 172 (275)
Q Consensus 93 EVl~~~~~~~~~~~LvPAM~NI~~AL~~~GL~~~IKVST~~s~~vyPPSaG~F~~d~~~~vm~piL~FL~~tgSPfmVNv 172 (275)
|.+-.+ +..+..|.--+..++.+|+.+|.+ .+|+|+-+..+|-- .+++. +..-..|+|.
T Consensus 142 Eal~r~--~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-----np~l~------------~~SDfia~N~ 200 (305)
T COG5309 142 EALNRN--DLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-----NPELC------------QASDFIAANA 200 (305)
T ss_pred hhhhcC--CCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC-----ChHHh------------hhhhhhhccc
Confidence 999553 233677888899999999999986 56888765544321 33332 1224568899
Q ss_pred CCCCccCCCCCccccchHH-HHHHHh-CCCCCCeeEEEec
Q 048169 173 PPKLSPLSDKTTIFASSYL-ESMKKL-GFLTVNKINVLIQ 210 (275)
Q Consensus 173 YPyFay~~np~~i~lD~~~-~amkk~-G~~~~n~in~~~~ 210 (275)
.|||--.. ..-..+.++ |.+|++ +-.+- |++++|.
T Consensus 201 ~aYwd~~~--~a~~~~~f~~~q~e~vqsa~g~-~k~~~v~ 237 (305)
T COG5309 201 HAYWDGQT--VANAAGTFLLEQLERVQSACGT-KKTVWVT 237 (305)
T ss_pred chhccccc--hhhhhhHHHHHHHHHHHHhcCC-CccEEEe
Confidence 99986542 221233333 444443 33332 3888887
No 3
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=93.58 E-value=0.083 Score=50.92 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=75.7
Q ss_pred cccccccCCCeEEeecCCh-----hhhhhccCCCccEEeecCccchHhhhcChHHHHHHHHh-------hccCCCCCccE
Q 048169 18 FTGAGQESIELLYVYDSTP-----ELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRT-------YVLPHYPATKI 85 (275)
Q Consensus 18 ~~~~ks~~I~~VRLyDad~-----~vL~AlagTgI~V~VgVpN~~L~~lAss~~aA~~WV~~-------NV~py~P~t~I 85 (275)
+..+|+.||.-||+|.-|| +-+++|+..||-|++++..- =.+|-+ ..-+.+|=.. -|-.|-.=.|.
T Consensus 59 i~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r-~~P~~sw~~~l~~~~~~vid~fa~Y~N~ 136 (314)
T PF03198_consen 59 IPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR-SDPAPSWNTDLLDRYFAVIDAFAKYDNT 136 (314)
T ss_dssp HHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T-TS------HHHHHHHHHHHHHHTT-TTE
T ss_pred HHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC-CCCcCCCCHHHHHHHHHHHHHhccCCce
Confidence 3457899999999996664 56999999999999988654 222211 1223455221 12223223467
Q ss_pred EEEeecccccccCCCcccchhhHHHHHHHHHHHHhcCCCCceEEecCccCCCCCCCccccchhhhhhhHHHHHHHHhhcC
Q 048169 86 TTIVVGNNLFCQKQQDHNLGLILPSLKNMYHSLKRWGLENEIKVSPAFSSSCFIPDLTLFRDDLIKQVIKPLLQFLHTAN 165 (275)
Q Consensus 86 ~~IaVGNEVl~~~~~~~~~~~LvPAM~NI~~AL~~~GL~~~IKVST~~s~~vyPPSaG~F~~d~~~~vm~piL~FL~~tg 165 (275)
-...+||||.........++++=.+.|.+++-+++.|.+ +|.|.=+- .|.. ..-.++.+||.=..
T Consensus 137 LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsa-------------aD~~-~~r~~~a~Yl~Cg~ 201 (314)
T PF03198_consen 137 LGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSA-------------ADDA-EIRQDLANYLNCGD 201 (314)
T ss_dssp EEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE----------------T-TTHHHHHHHTTBTT
T ss_pred EEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEc-------------cCCh-hHHHHHHHHhcCCC
Confidence 788999999964222222677888888999999999885 47776221 1222 34456778877322
Q ss_pred C-----ceEecCCCCC
Q 048169 166 S-----TYSIIPPPKL 176 (275)
Q Consensus 166 S-----PfmVNvYPyF 176 (275)
. .|-+|.|-|=
T Consensus 202 ~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 202 DDERIDFFGLNSYEWC 217 (314)
T ss_dssp -----S-EEEEE----
T ss_pred cccccceeeeccceec
Confidence 2 3677887665
No 4
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=75.64 E-value=2.9 Score=39.88 Aligned_cols=89 Identities=10% Similarity=0.092 Sum_probs=53.6
Q ss_pred hhHHHH-HHHHHHHHhcCCCCceEEecCccCCCCCCCccccch--hhhhhhHHHHHHHHhhcCCceE----ecCCCCCcc
Q 048169 106 LILPSL-KNMYHSLKRWGLENEIKVSPAFSSSCFIPDLTLFRD--DLIKQVIKPLLQFLHTANSTYS----IIPPPKLSP 178 (275)
Q Consensus 106 ~LvPAM-~NI~~AL~~~GL~~~IKVST~~s~~vyPPSaG~F~~--d~~~~vm~piL~FL~~tgSPfm----VNvYPyFay 178 (275)
.++=|| +.++.|+.+.|-.+ ++|...-.. +||+|.... +-++.+...+.+|+. .|.|.. +++|=|=+|
T Consensus 207 nlfDa~~da~~~a~~~~g~~~-~~vvv~ETG---WPs~G~~~a~~~nA~~~~~nl~~~~~-~gt~~~~~~~~~~y~F~~F 281 (310)
T PF00332_consen 207 NLFDAMVDAVYAAMEKLGFPN-VPVVVGETG---WPSAGDPGATPENAQAYNQNLIKHVL-KGTPLRPGNGIDVYIFEAF 281 (310)
T ss_dssp SHHHHHHHHHHHHHHTTT-TT---EEEEEE------SSSSTTCSHHHHHHHHHHHHHHCC-GBBSSSBSS---EEES-SB
T ss_pred HHHHHHHHHHHHHHHHhCCCC-ceeEEeccc---cccCCCCCCCcchhHHHHHHHHHHHh-CCCcccCCCCCeEEEEEEe
Confidence 455555 78999999999864 777655555 799998432 223478999999999 567754 567877777
Q ss_pred CCCCCccccchHHHHHHHhCCCCCCe
Q 048169 179 LSDKTTIFASSYLESMKKLGFLTVNK 204 (275)
Q Consensus 179 ~~np~~i~lD~~~~amkk~G~~~~n~ 204 (275)
..|.+. . .+++|+.|.++.|+
T Consensus 282 dE~~K~----~-~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 282 DENWKP----G-PEVERHWGLFYPDG 302 (310)
T ss_dssp --TTSS----S-SGGGGG--SB-TTS
T ss_pred cCcCCC----C-CcccceeeeECCCC
Confidence 777664 1 23899999999775
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=71.54 E-value=42 Score=32.67 Aligned_cols=158 Identities=14% Similarity=0.135 Sum_probs=78.6
Q ss_pred cccccccCCC--eEEee-cCCh----------hhhhhccCCCccEEeecC--------cc-ch---------HhhhcChH
Q 048169 18 FTGAGQESIE--LLYVY-DSTP----------ELLPAASHSGLPLAVPVS--------EK-NL---------DEISSSVI 66 (275)
Q Consensus 18 ~~~~ks~~I~--~VRLy-Dad~----------~vL~AlagTgI~V~VgVp--------N~-~L---------~~lAss~~ 66 (275)
|..+|..|+. |+|+| ||.. ++.+--+.-|+.|+++.- .. .+ ..|+ .
T Consensus 30 ~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~---~ 106 (332)
T PF07745_consen 30 FQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA---K 106 (332)
T ss_dssp HHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH---H
T ss_pred HHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH---H
Confidence 4567899998 56666 5443 233344567999999753 11 12 2222 3
Q ss_pred HHHHHHHhhccCCC-CCccEEEEeeccccccc--C-CCc-ccchhhHHHHHHHHHHHHhcCCCCceEEecCccCCCCCCC
Q 048169 67 MAESWLRTYVLPHY-PATKITTIVVGNNLFCQ--K-QQD-HNLGLILPSLKNMYHSLKRWGLENEIKVSPAFSSSCFIPD 141 (275)
Q Consensus 67 aA~~WV~~NV~py~-P~t~I~~IaVGNEVl~~--~-~~~-~~~~~LvPAM~NI~~AL~~~GL~~~IKVST~~s~~vyPPS 141 (275)
+..++.+.-+..+- -++....|-||||+-.+ . .+. -.+..+.-=++.-.+|.++.+ .++||-.-+.. +-+
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~--p~~kV~lH~~~---~~~ 181 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD--PNIKVMLHLAN---GGD 181 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS--STSEEEEEES----TTS
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC--CCCcEEEEECC---CCc
Confidence 44445444333322 36888999999998754 1 111 113333333344456666644 34666543332 111
Q ss_pred ccccchhhhhhhHHHHHHHHhhcCCc---eEecCCCCCccCCCCCccccchHHHHHHHhCC
Q 048169 142 LTLFRDDLIKQVIKPLLQFLHTANST---YSIIPPPKLSPLSDKTTIFASSYLESMKKLGF 199 (275)
Q Consensus 142 aG~F~~d~~~~vm~piL~FL~~tgSP---fmVNvYPyFay~~np~~i~lD~~~~amkk~G~ 199 (275)
. ...+-..+.|.+.|-. +=+..|||+.= .++++...|+.+.-
T Consensus 182 ~---------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-------~l~~l~~~l~~l~~ 226 (332)
T PF07745_consen 182 N---------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-------TLEDLKNNLNDLAS 226 (332)
T ss_dssp H---------HHHHHHHHHHHHTTGG-SEEEEEE-STTST--------HHHHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHhcCCCcceEEEecCCCCcc-------hHHHHHHHHHHHHH
Confidence 1 2345566677777766 45678886543 46677666655543
No 6
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=69.84 E-value=24 Score=31.09 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=69.8
Q ss_pred ccccccCCCeEEeecC-------C-------------hhhhhhccCCCccEEeecCcc-ch---HhhhcChHHHHHHHHh
Q 048169 19 TGAGQESIELLYVYDS-------T-------------PELLPAASHSGLPLAVPVSEK-NL---DEISSSVIMAESWLRT 74 (275)
Q Consensus 19 ~~~ks~~I~~VRLyDa-------d-------------~~vL~AlagTgI~V~VgVpN~-~L---~~lAss~~aA~~WV~~ 74 (275)
...|+.|+..|||.-. + .++|++++.-||.|+|.+-+. .. ...........+|+++
T Consensus 28 ~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~ 107 (281)
T PF00150_consen 28 DQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKS 107 (281)
T ss_dssp HHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHH
T ss_pred HHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHh
Confidence 3467888998888622 2 136788888999999988764 01 1111233344444433
Q ss_pred ---hccCCC-CCccEEEEeecccccccCCCcc----cchhhHHHHHHHHHHHHhcCCCCceEEec
Q 048169 75 ---YVLPHY-PATKITTIVVGNNLFCQKQQDH----NLGLILPSLKNMYHSLKRWGLENEIKVSP 131 (275)
Q Consensus 75 ---NV~py~-P~t~I~~IaVGNEVl~~~~~~~----~~~~LvPAM~NI~~AL~~~GL~~~IKVST 131 (275)
.+...| ..-.|.++=+.||+-....... ....+...++.+.+++++.+-+..|-|..
T Consensus 108 ~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 108 FWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 233333 3344668999999986532111 02567788999999999999876565554
No 7
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=58.05 E-value=15 Score=34.60 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=31.9
Q ss_pred ccccccCCCeEEeecCChhhhhhccCCCccEEeecCccchHhhhcChHHHHHHHHhhccCCCCCccEE
Q 048169 19 TGAGQESIELLYVYDSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKIT 86 (275)
Q Consensus 19 ~~~ks~~I~~VRLyDad~~vL~AlagTgI~V~VgVpN~~L~~lAss~~aA~~WV~~NV~py~P~t~I~ 86 (275)
+++-++||..-|.=|.| .|. .+.|+.+| -..|-+|+++|=+|.-+.+++.
T Consensus 38 AlL~~~gI~A~K~~~~~---------g~~--~l~Ve~~~-------fa~Av~iL~~~GlPr~~f~~l~ 87 (246)
T COG4669 38 ALLMSHGINAEKKADKD---------GGT--SLLVEESD-------FAEAVEILNQNGLPRKKFTTLG 87 (246)
T ss_pred HHHHHcCCcceeeccCC---------Cce--EEEEcHHH-------HHHHHHHHHhcCCCCCCCCcHH
Confidence 34556777766662222 122 25555543 4578899999999998877764
No 8
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=43.00 E-value=57 Score=33.04 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=74.2
Q ss_pred hhhccCCCccE-EeecCccchHhhhcChHHHHHHHHhhccCCCCCccEEEEeecccccccCCCcccchhhHHHHHHHHHH
Q 048169 39 LPAASHSGLPL-AVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKITTIVVGNNLFCQKQQDHNLGLILPSLKNMYHS 117 (275)
Q Consensus 39 L~AlagTgI~V-~VgVpN~~L~~lAss~~aA~~WV~~NV~py~P~t~I~~IaVGNEVl~~~~~~~~~~~LvPAM~NI~~A 117 (275)
|+.|...|+.- .|.++.++... -++|+..|..=....--+.+.+++||-+.. .-++++||.-
T Consensus 47 L~~L~~~gfteiiVv~~e~e~~~-------i~~al~~~~~l~~~~~~v~ip~~~~~d~gt----------adsLr~Iy~k 109 (433)
T KOG1462|consen 47 LNSLEQAGFTEIIVVVNEDEKLD-------IESALGSNIDLKKRPDYVEIPTDDNSDFGT----------ADSLRYIYSK 109 (433)
T ss_pred hhHHHhcCCeEEEEEecHHHHHH-------HHHHHhcCCcccccccEEEeecccccccCC----------HHHHhhhhhh
Confidence 55556666654 44444434333 367998887665555567788888886633 2256888876
Q ss_pred HHhcCCCCceEEecCccCCCCCCCccccchhhhhhhHHHHHHHHhhcCCceEecCCCCCccCCCCCc
Q 048169 118 LKRWGLENEIKVSPAFSSSCFIPDLTLFRDDLIKQVIKPLLQFLHTANSTYSIIPPPKLSPLSDKTT 184 (275)
Q Consensus 118 L~~~GL~~~IKVST~~s~~vyPPSaG~F~~d~~~~vm~piL~FL~~tgSPfmVNvYPyFay~~np~~ 184 (275)
+++ ++-+-+| +.|-.|+. +.|++++.+.+++-|++-+|+..++...|+.
T Consensus 110 ikS---~Dflvls------------CD~Vtdv~---l~~lvd~FR~~d~slamli~~~~s~~~~pgq 158 (433)
T KOG1462|consen 110 IKS---EDFLVLS------------CDFVTDVP---LQPLVDKFRATDASLAMLIGNALSEVPIPGQ 158 (433)
T ss_pred hcc---CCEEEEe------------cccccCCC---cHHHHHHHhccChhHhHHhccccccccccCc
Confidence 655 2223333 44555543 6799999999999999999999988877754
No 9
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=41.07 E-value=38 Score=33.26 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhcCC-ceEecCCCCCccCCCCCccccchH---HHHHHHhCCCCCC
Q 048169 152 QVIKPLLQFLHTANS-TYSIIPPPKLSPLSDKTTIFASSY---LESMKKLGFLTVN 203 (275)
Q Consensus 152 ~vm~piL~FL~~tgS-PfmVNvYPyFay~~np~~i~lD~~---~~amkk~G~~~~n 203 (275)
.+|+.+..+|++.+. |+.||+-|--.-..=|.+|+.-+- -|.||+.|. ++|
T Consensus 34 TF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L-GPN 88 (366)
T KOG1532|consen 34 TFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL-GPN 88 (366)
T ss_pred hHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC-CCC
Confidence 689999999999888 899999885444444455554333 388888887 554
No 10
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=38.84 E-value=59 Score=31.18 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCCccccchhhhhhhHHHHHHHHhhcCCc-eEecCCCCCccCCCCCccc---cchHHHHHHHhCCCCCCe
Q 048169 139 IPDLTLFRDDLIKQVIKPLLQFLHTANST-YSIIPPPKLSPLSDKTTIF---ASSYLESMKKLGFLTVNK 204 (275)
Q Consensus 139 PPSaG~F~~d~~~~vm~piL~FL~~tgSP-fmVNvYPyFay~~np~~i~---lD~~~~amkk~G~~~~n~ 204 (275)
||++|.- .|-.-+.+||+.+|.+ ..||.-|----..=+-.++ +-.+...|+++|. ++|.
T Consensus 10 PPgSGKs------TYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~L-GPNg 72 (290)
T KOG1533|consen 10 PPGSGKS------TYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGL-GPNG 72 (290)
T ss_pred CCCCCcc------chhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCC-CCch
Confidence 8999983 5777889999999987 6789888211111011122 2233477888887 6663
No 11
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=38.39 E-value=29 Score=27.67 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=27.8
Q ss_pred ccccchHHHHHHHhCCCCCCeeEEEecCCCCCcccccch
Q 048169 184 TIFASSYLESMKKLGFLTVNKINVLIQNPKGTKPTSRKL 222 (275)
Q Consensus 184 ~i~lD~~~~amkk~G~~~~n~in~~~~~~~~~~~~~r~l 222 (275)
.++.+++.+++|+-|+++...|..++.+|.|.-..-++=
T Consensus 26 ~it~~dl~~~LR~~gi~~l~dV~~a~lE~~G~lsv~~k~ 64 (99)
T PF04239_consen 26 RITEEDLLSALREQGIESLSDVKAAVLEPNGQLSVIKKE 64 (99)
T ss_dssp T--HHHHHHHHHHTT--SGGGEEEEEE-TTS-EEEEE-G
T ss_pred CCCHHHHHHHHHhhCCCCHHHcCEEEECCCCCEEEEEcC
Confidence 567889999999999999999999999999966555443
No 12
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=38.04 E-value=31 Score=31.99 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhcccccccCCCeEEeecC---------ChhhhhhccC-CCccEEeec
Q 048169 7 LFHIFFLCFLGFTGAGQESIELLYVYDS---------TPELLPAASH-SGLPLAVPV 53 (275)
Q Consensus 7 l~~~~~l~~l~~~~~ks~~I~~VRLyDa---------d~~vL~Alag-TgI~V~VgV 53 (275)
|+.+|||.|.|-|..++. +.+++|.. ++.++++|.. |||+|.+.-
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~L~vy~~~~~~~~~~~~~~i~~~Fe~~tgikV~~~~ 59 (330)
T PRK11205 5 LLPLLLLAAAPVFAAAAK--PVLTVYTYDSFAAEWGPGPAVKKAFEAECGCELKFVA 59 (330)
T ss_pred HHHHHHHHHHHHhhccCC--CeEEEEEcccccccCCCchHHHHHHHHHHCCEEEEEe
Confidence 345566655555544443 47888872 2468899854 899998853
No 13
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=37.15 E-value=19 Score=31.95 Aligned_cols=36 Identities=6% Similarity=0.099 Sum_probs=30.2
Q ss_pred hcccccccCCCeEEeecCChhhhhhccCCCccEEee
Q 048169 17 GFTGAGQESIELLYVYDSTPELLPAASHSGLPLAVP 52 (275)
Q Consensus 17 ~~~~~ks~~I~~VRLyDad~~vL~AlagTgI~V~Vg 52 (275)
|--.++..||++|||...++.=..||+|-||+|+=-
T Consensus 130 GAQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv~~ 165 (191)
T TIGR00505 130 CADILEDLGVKKVRLLTNNPKKIEILKKAGINIVER 165 (191)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEE
Confidence 344578889999999988888899999999999733
No 14
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=36.63 E-value=1e+02 Score=29.74 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=59.1
Q ss_pred cCCCeEEee-cCChhhhhhccCCCccEEeecCccchHhhhcChHHHHHHHHhhc----cCCCCCccEEEEeecccccccC
Q 048169 24 ESIELLYVY-DSTPELLPAASHSGLPLAVPVSEKNLDEISSSVIMAESWLRTYV----LPHYPATKITTIVVGNNLFCQK 98 (275)
Q Consensus 24 ~~I~~VRLy-Dad~~vL~AlagTgI~V~VgVpN~~L~~lAss~~aA~~WV~~NV----~py~P~t~I~~IaVGNEVl~~~ 98 (275)
+.|+.+.+| +.|++++..-...|++|+...... ... .+++..-+.|+++-| .-.+-+++|-+=-.+.+
T Consensus 54 ~~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~-l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~----- 126 (358)
T cd02875 54 SKVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQ-ISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITK----- 126 (358)
T ss_pred ccceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHH-cCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCC-----
Confidence 457788888 568888877677899999864322 233 346666666665543 11234555543322221
Q ss_pred CCcccchhhHHHHHHHHHHHHhcCCCCceEEec
Q 048169 99 QQDHNLGLILPSLKNMYHSLKRWGLENEIKVSP 131 (275)
Q Consensus 99 ~~~~~~~~LvPAM~NI~~AL~~~GL~~~IKVST 131 (275)
+... ...+.-=|+.++++|.+.|.+-.+-|++
T Consensus 127 ~~~d-~~~~t~llkelr~~l~~~~~~~~Lsvav 158 (358)
T cd02875 127 GSPE-YYALTELVKETTKAFKKENPGYQISFDV 158 (358)
T ss_pred Ccch-HHHHHHHHHHHHHHHhhcCCCcEEEEEE
Confidence 1111 3456777889999999887543344443
No 15
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=36.15 E-value=20 Score=31.97 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=30.2
Q ss_pred cccccccCCCeEEeecCChhhhhhccCCCccEEeec
Q 048169 18 FTGAGQESIELLYVYDSTPELLPAASHSGLPLAVPV 53 (275)
Q Consensus 18 ~~~~ks~~I~~VRLyDad~~vL~AlagTgI~V~VgV 53 (275)
--.++..||++|||...++.-..+|.|-||+|+=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 345788999999999888888899999999997333
No 16
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=34.33 E-value=25 Score=24.90 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=14.1
Q ss_pred CcchhHHHHHHHHHhhhccc
Q 048169 1 MLKLLWLFHIFFLCFLGFTG 20 (275)
Q Consensus 1 ~~k~~~l~~~~~l~~l~~~~ 20 (275)
|-|+.-||.+||+.|+--.-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 66788888888777765433
No 17
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=33.93 E-value=22 Score=20.96 Aligned_cols=15 Identities=27% Similarity=0.751 Sum_probs=9.9
Q ss_pred CcchhHHH-HHHHHHh
Q 048169 1 MLKLLWLF-HIFFLCF 15 (275)
Q Consensus 1 ~~k~~~l~-~~~~l~~ 15 (275)
|||+...+ ++|+++|
T Consensus 1 MMk~vIIlvvLLliSf 16 (19)
T PF13956_consen 1 MMKLVIILVVLLLISF 16 (19)
T ss_pred CceehHHHHHHHhccc
Confidence 88888776 4554444
No 18
>PHA02691 hypothetical protein; Provisional
Probab=33.37 E-value=23 Score=29.60 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=13.7
Q ss_pred hhHHH-HHHHHHhhhcccc
Q 048169 4 LLWLF-HIFFLCFLGFTGA 21 (275)
Q Consensus 4 ~~~l~-~~~~l~~l~~~~~ 21 (275)
|.||+ .+||+.||++|-+
T Consensus 1 ~~~l~~l~fFi~FL~l~Y~ 19 (110)
T PHA02691 1 MSWALEVALFAAFLAAAYV 19 (110)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 66777 8888888887643
No 19
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=33.27 E-value=26 Score=28.14 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=25.1
Q ss_pred hhhhhhccCCCccEEeecCccchHhhhc
Q 048169 36 PELLPAASHSGLPLAVPVSEKNLDEISS 63 (275)
Q Consensus 36 ~~vL~AlagTgI~V~VgVpN~~L~~lAs 63 (275)
.++++|+++-++||+++++.++...|..
T Consensus 64 ~~ll~ala~ldvEvV~a~~~~~~~~lg~ 91 (97)
T PF06722_consen 64 RRLLEALAGLDVEVVVALPAAQRAELGE 91 (97)
T ss_dssp HHHHHHHHTSSSEEEEEETTCCCGGCCS
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHhhCC
Confidence 6899999999999999999998887753
No 20
>PRK00124 hypothetical protein; Validated
Probab=33.09 E-value=28 Score=30.42 Aligned_cols=92 Identities=15% Similarity=0.279 Sum_probs=53.2
Q ss_pred EEee-cCCh-----hhhhhccCCCccEEe-ecCccch----------HhhhcChHHHHHHHHhhccCCCCCccEEE----
Q 048169 29 LYVY-DSTP-----ELLPAASHSGLPLAV-PVSEKNL----------DEISSSVIMAESWLRTYVLPHYPATKITT---- 87 (275)
Q Consensus 29 VRLy-Dad~-----~vL~AlagTgI~V~V-gVpN~~L----------~~lAss~~aA~~WV~~NV~py~P~t~I~~---- 87 (275)
|||| |+|. ++.++-...|++|++ .--|..+ --+.+..++|+.|+-+++.+- +.-||.
T Consensus 1 m~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~g--DiVIT~Di~L 78 (151)
T PRK00124 1 MKIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKG--DIVITQDYGL 78 (151)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCC--CEEEeCCHHH
Confidence 4677 7773 566776778888876 3112222 224567899999999999885 332221
Q ss_pred --Eee--cccccccCCCccc---chhhHHHHHHHHHHHHhcCC
Q 048169 88 --IVV--GNNLFCQKQQDHN---LGLILPSLKNMYHSLKRWGL 123 (275)
Q Consensus 88 --IaV--GNEVl~~~~~~~~---~~~LvPAM~NI~~AL~~~GL 123 (275)
.++ |--++......+. .. -+=+||++.+-|++.|.
T Consensus 79 Aa~~l~Kga~vl~prG~~yt~~nI~-~~L~~R~~~~~lR~~G~ 120 (151)
T PRK00124 79 AALALEKGAIVLNPRGYIYTNDNID-QLLAMRDLMATLRRSGI 120 (151)
T ss_pred HHHHHHCCCEEECCCCcCCCHHHHH-HHHHHHHHHHHHHHcCC
Confidence 111 1222221111110 22 33489999999999985
No 21
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=32.09 E-value=51 Score=27.10 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=28.7
Q ss_pred CCCCccccchhhhhhhHHHHHHHHhh--cCCceEecCCCCCcc
Q 048169 138 FIPDLTLFRDDLIKQVIKPLLQFLHT--ANSTYSIIPPPKLSP 178 (275)
Q Consensus 138 yPPSaG~F~~d~~~~vm~piL~FL~~--tgSPfmVNvYPyFay 178 (275)
.|=.+..+.+| ..+.-+.+|.+. -|+-.|+|+||+.+=
T Consensus 21 NPS~A~~~~~D---~T~~~~~~~a~~~gyg~~~i~NLf~~~~t 60 (136)
T PF07799_consen 21 NPSTADAEKDD---PTIRRCINFARRWGYGGVIIVNLFPQRST 60 (136)
T ss_pred CCCCCCCcCCC---HHHHHHHHHHhhcCCCeEEEEEecccccC
Confidence 56666677776 457779999876 456789999998773
No 22
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.87 E-value=53 Score=26.77 Aligned_cols=28 Identities=11% Similarity=-0.031 Sum_probs=23.4
Q ss_pred chhhHHHHHHHHHHHHhcCCCCceEEec
Q 048169 104 LGLILPSLKNMYHSLKRWGLENEIKVSP 131 (275)
Q Consensus 104 ~~~LvPAM~NI~~AL~~~GL~~~IKVST 131 (275)
....--+|+||...|+++|.++-+|+++
T Consensus 32 ~~Q~~qal~Ni~~vL~~aG~~dVvk~~i 59 (118)
T cd06156 32 TLQAVLSLQHLERVAKAMNVQWVLAAVC 59 (118)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4568889999999999999966577774
No 23
>PHA01735 hypothetical protein
Probab=30.18 E-value=31 Score=26.96 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=19.9
Q ss_pred cChHHHHHHHHhhccCCCCCccEEEEeeccccc
Q 048169 63 SSVIMAESWLRTYVLPHYPATKITTIVVGNNLF 95 (275)
Q Consensus 63 ss~~aA~~WV~~NV~py~P~t~I~~IaVGNEVl 95 (275)
++..+|.+|++.| +|+.+++-|..+
T Consensus 33 aDL~AA~d~Lk~N--------dItgv~~~gspl 57 (76)
T PHA01735 33 ADLRAACDWLKSN--------DITGVAVDGSPL 57 (76)
T ss_pred HHHHHHHHHHHHC--------CCceeeCCCCHH
Confidence 4678999999988 788888866655
No 24
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=28.79 E-value=84 Score=24.64 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=29.8
Q ss_pred EEeecccccccC------CCcccchhhHHHHHHHHHHHHhcCCC--CceEEec
Q 048169 87 TIVVGNNLFCQK------QQDHNLGLILPSLKNMYHSLKRWGLE--NEIKVSP 131 (275)
Q Consensus 87 ~IaVGNEVl~~~------~~~~~~~~LvPAM~NI~~AL~~~GL~--~~IKVST 131 (275)
.+.+|+-++.++ +++. ..+.--+|+||...|+++|.+ +-+|++.
T Consensus 6 av~~g~~v~iSGq~~~~~~~~~-~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~v 57 (105)
T cd06150 6 AVVHNGTVYLAGQVADDTSADI-TGQTRQVLAKIDALLAEAGSDKSRILSATI 57 (105)
T ss_pred EEEECCEEEEeCcCCcCCCCCH-HHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 344566665321 1334 567889999999999999975 4467664
No 25
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=28.43 E-value=32 Score=30.51 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=30.4
Q ss_pred hcccccccCCCeEEeecCChhhhhhccCCCccEEeec
Q 048169 17 GFTGAGQESIELLYVYDSTPELLPAASHSGLPLAVPV 53 (275)
Q Consensus 17 ~~~~~ks~~I~~VRLyDad~~vL~AlagTgI~V~VgV 53 (275)
|--.++..||++|||...++.-..||.|-||+|+=-+
T Consensus 132 GAQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 132 AAQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 3345778899999999888888899999999998444
No 26
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=28.14 E-value=2.8e+02 Score=25.68 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=42.0
Q ss_pred hhhccCC--CccEEeecCc----cchHhhhcChHHHHHHHHhhccCCCCCccEEEEeecccccccCCCcccchhhHHHHH
Q 048169 39 LPAASHS--GLPLAVPVSE----KNLDEISSSVIMAESWLRTYVLPHYPATKITTIVVGNNLFCQKQQDHNLGLILPSLK 112 (275)
Q Consensus 39 L~AlagT--gI~V~VgVpN----~~L~~lAss~~aA~~WV~~NV~py~P~t~I~~IaVGNEVl~~~~~~~~~~~LvPAM~ 112 (275)
+++++.. ++.|++.|.+ +....++++...-+++++ +|..++-.-.+-.|-+==|-......+ ...++.-|+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d--~~~~~~ll~ 133 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDD--RENYTALLK 133 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccH--HHHHHHHHH
Confidence 5666664 9999999987 457777777654444332 222222211223333221221110011 234666777
Q ss_pred HHHHHHHhc
Q 048169 113 NMYHSLKRW 121 (275)
Q Consensus 113 NI~~AL~~~ 121 (275)
.++.+|.+.
T Consensus 134 ~lr~~l~~~ 142 (334)
T smart00636 134 ELREALDKE 142 (334)
T ss_pred HHHHHHHHh
Confidence 888888764
No 27
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=27.78 E-value=71 Score=32.41 Aligned_cols=95 Identities=19% Similarity=0.322 Sum_probs=48.9
Q ss_pred CcchhHHHHHHHHHhhhcccccccCC--CeEEee--cCC-hhhhhhccC-CCccEEeecCcc-chH-hh-hcCh-HHHHH
Q 048169 1 MLKLLWLFHIFFLCFLGFTGAGQESI--ELLYVY--DST-PELLPAASH-SGLPLAVPVSEK-NLD-EI-SSSV-IMAES 70 (275)
Q Consensus 1 ~~k~~~l~~~~~l~~l~~~~~ks~~I--~~VRLy--Dad-~~vL~Alag-TgI~V~VgVpN~-~L~-~l-Ass~-~aA~~ 70 (275)
|+|+..|..+|+||-.-++.++...- ..+.+. |+| .++|++|+. +|+.++++=.=. .+. .+ ..++ ..-+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~di~~vl~~~a~~~g~nivv~~~V~G~vtgr~~~~~~~~~l~~ 80 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKFAASKSIPWQGNPFFIYSRGMPLAEVLHDLGANYGIPVVISPEINDTFSGKIRDGPPVKILNE 80 (499)
T ss_pred CchhHHHHHHHHHhhhhhhccCCCCCCCCCEEEEECCCcHHHHHHHHHHHhCCCEEECccccccEEeEEcCCCHHHHHHH
Confidence 67766555444444443333333322 233333 555 689999987 788887762111 110 01 1122 33334
Q ss_pred HHHhhccCCCCCccEEEEeeccccc
Q 048169 71 WLRTYVLPHYPATKITTIVVGNNLF 95 (275)
Q Consensus 71 WV~~NV~py~P~t~I~~IaVGNEVl 95 (275)
-++.+=+.+|++=++-+|.=.+|.-
T Consensus 81 il~~~gl~~~~~G~vl~I~p~~e~~ 105 (499)
T PRK15346 81 LARRYHLTWYYDGNTLYVYKASEIK 105 (499)
T ss_pred HHHHhCcEEEEcCCEEEEecchheE
Confidence 4566655555666666776666554
No 28
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=27.09 E-value=31 Score=33.39 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=16.1
Q ss_pred ChHHHHHHHHhhccCCCC
Q 048169 64 SVIMAESWLRTYVLPHYP 81 (275)
Q Consensus 64 s~~aA~~WV~~NV~py~P 81 (275)
|+..|.+||++||..|=.
T Consensus 188 Dq~~AL~WV~~nI~~FGG 205 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGG 205 (535)
T ss_dssp HHHHHHHHHHHHGGGGTE
T ss_pred hhHHHHHHHHhhhhhccc
Confidence 789999999999999943
No 29
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=26.67 E-value=82 Score=24.10 Aligned_cols=58 Identities=12% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCceEEecCccCCC-CC-CCccccchhhhhhhHHHHHHHHhhcCCceEecCCC
Q 048169 114 MYHSLKRWGLENEIKVSPAFSSSC-FI-PDLTLFRDDLIKQVIKPLLQFLHTANSTYSIIPPP 174 (275)
Q Consensus 114 I~~AL~~~GL~~~IKVST~~s~~v-yP-PSaG~F~~d~~~~vm~piL~FL~~tgSPfmVNvYP 174 (275)
|+..|.++.-...-+|. -..+. |+ ...-+|+.+.. ..++.++.-+...|.|+-+.+|+
T Consensus 12 L~~~L~~Wa~~aGw~l~--W~~~~dy~i~~~~~~~gsf~-~Av~~l~~~~~~~~~~l~~~~y~ 71 (84)
T PF10671_consen 12 LREALERWAKQAGWTLV--WDAPKDYPIDAPATFSGSFE-DAVKQLFSAYNSAGYPLQVCFYQ 71 (84)
T ss_dssp HHHHHHHHHHCTT-EEE--E-SSS--B--CCCCC-E-HH-HHHHHHHHHHGGGTEEEEEETTE
T ss_pred HHHHHHHHHHHCCCEEE--ecCCCCEEecCceEecCcHH-HHHHHHHHHHHhCCCCeEEEEee
Confidence 55666665543334554 22222 32 45556766665 57888999999999999999997
No 30
>PLN03207 stomagen; Provisional
Probab=25.65 E-value=37 Score=28.25 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHhhhcccccccCCCeEEeecCChh
Q 048169 3 KLLWLFHIFFLCFLGFTGAGQESIELLYVYDSTPE 37 (275)
Q Consensus 3 k~~~l~~~~~l~~l~~~~~ks~~I~~VRLyDad~~ 37 (275)
|-+|++.+|||+||.|.-+--+|...=++-+.|+.
T Consensus 9 tt~~~~lffLl~~llla~~v~qgsr~~~~~~~~~~ 43 (113)
T PLN03207 9 TTRCLTLFFLLFFLLLGAYVIQGSRNQSILPYDQS 43 (113)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccccccCcccc
Confidence 45688888889999888887788887788777766
No 31
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=24.82 E-value=57 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=21.9
Q ss_pred cchhHHH-HHHHHHhhhcccccccCCCeEEeecCChh
Q 048169 2 LKLLWLF-HIFFLCFLGFTGAGQESIELLYVYDSTPE 37 (275)
Q Consensus 2 ~k~~~l~-~~~~l~~l~~~~~ks~~I~~VRLyDad~~ 37 (275)
|++|-+| .+|.+..++..+..+..-.+=.|||+.|.
T Consensus 3 lnlg~i~l~lL~ll~~~~~~~~e~~r~qgpiFDTRPS 39 (52)
T PF08105_consen 3 LNLGAIFLALLGLLALAGSVLTEAHRRQGPIFDTRPS 39 (52)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhccCCCCCCCCC
Confidence 5677776 34444444555555555566778998764
No 32
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=24.30 E-value=1.9e+02 Score=24.92 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHhcCCCCceEEecCccCCC-CCCCccccchhhhhhhHHHHHHHHhhcCCceEecCCCCCccCCCCC
Q 048169 105 GLILPSLKNMYHSLKRWGLENEIKVSPAFSSSC-FIPDLTLFRDDLIKQVIKPLLQFLHTANSTYSIIPPPKLSPLSDKT 183 (275)
Q Consensus 105 ~~LvPAM~NI~~AL~~~GL~~~IKVST~~s~~v-yPPSaG~F~~d~~~~vm~piL~FL~~tgSPfmVNvYPyFay~~np~ 183 (275)
.+.--+.+.|++-|...|-+ +.+++... -.|+.. -+.-|++||-+. +-|.|....+.
T Consensus 36 ~~q~~~~~~I~~fL~~~~~~-----~~~is~k~l~~Pt~k---------df~~I~~fL~~~-------idp~~~~~~k~- 93 (157)
T PF03801_consen 36 SYQQECIRKIYEFLSEHGFE-----SHPISPKTLKSPTQK---------DFVEIFNFLFRQ-------IDPNFKFGKKF- 93 (157)
T ss_dssp HHHHHHHHHHHHHHHHTT-------SS---TTTTSS--HH---------HHHHHHHHHHHT-------TSTT---SSTH-
T ss_pred HHHHHHHHHHHHHHHHcCCC-----CccccccccCCCCHH---------HHHHHHHHHHHH-------hCCCCCcCcCH-
Confidence 45667889999999999871 12222222 345543 345677888773 34555553222
Q ss_pred ccccchHHHHHHHhCCCC
Q 048169 184 TIFASSYLESMKKLGFLT 201 (275)
Q Consensus 184 ~i~lD~~~~amkk~G~~~ 201 (275)
-|.+...||.+|+..
T Consensus 94 ---eeev~~~lK~L~YP~ 108 (157)
T PF03801_consen 94 ---EEEVPFLLKALGYPF 108 (157)
T ss_dssp ---HHHHHHHHHHTT-SS
T ss_pred ---HHHHHHHHHHhCCCc
Confidence 458889999999987
No 33
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.08 E-value=5.2e+02 Score=25.66 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=44.1
Q ss_pred hhHHHHHHHHhhcCCceEecCCCCCccCCCCCccccchHHHHHHHhCCCCCCeeEEEecCCCCCcccc
Q 048169 152 QVIKPLLQFLHTANSTYSIIPPPKLSPLSDKTTIFASSYLESMKKLGFLTVNKINVLIQNPKGTKPTS 219 (275)
Q Consensus 152 ~vm~piL~FL~~tgSPfmVNvYPyFay~~np~~i~lD~~~~amkk~G~~~~n~in~~~~~~~~~~~~~ 219 (275)
.++.-+..|..++|-.++++ |....=.+|.. -.++.+.+.+|.++ ...=+||++--.|-+...|.
T Consensus 266 ~ll~a~~~~~~~~grrv~ie-yvLi~GvNDs~-e~a~~L~~llk~~~-~~~~~VNLIpyNp~~~~~y~ 330 (373)
T PRK14459 266 EVLDAARYYADATGRRVSIE-YALIRDINDQP-WRADLLGKKLHGRG-GGWVHVNLIPLNPTPGSKWT 330 (373)
T ss_pred HHHHHHHHHHHHhCCEEEEE-EEEeCCCCCCH-HHHHHHHHHHhhcc-CCCeEEEEEccCCCCCCCCc
Confidence 56777788888999999999 77777555532 23555667777664 12347899888775554443
No 34
>KOG4306 consensus Glycosylphosphatidylinositol-specific phospholipase C [Signal transduction mechanisms]
Probab=23.20 E-value=1.3e+02 Score=29.29 Aligned_cols=91 Identities=26% Similarity=0.391 Sum_probs=61.5
Q ss_pred cccc-hhhhhhhHHHHHHHHhhcCCceEecCCCCCccCCCCCccccchHHHHHHHhCCCCCCeeEEEecCCCCCcccccc
Q 048169 143 TLFR-DDLIKQVIKPLLQFLHTANSTYSIIPPPKLSPLSDKTTIFASSYLESMKKLGFLTVNKINVLIQNPKGTKPTSRK 221 (275)
Q Consensus 143 G~F~-~d~~~~vm~piL~FL~~tgSPfmVNvYPyFay~~np~~i~lD~~~~amkk~G~~~~n~in~~~~~~~~~~~~~r~ 221 (275)
|.|. -++. .++..|.+||.+|++=.++--.+-|-+.+++.+ .-+-++-|.||.+ ++-.-...++.+.|.
T Consensus 103 Gl~~~~~v~-~vL~ev~~Fl~~h~eEVViL~f~~~fg~~~~~h----~~l~~~ik~~~g~-----~l~~d~~~~~~~lr~ 172 (306)
T KOG4306|consen 103 GLFSTYPVL-EVLNEVRQFLSEHPEEVVILEFRHFFGMTEPHH----RKLVLVIKQGFGD-----ILCDDSLFEKPTLRE 172 (306)
T ss_pred eccccccHH-HHHHHHHHHHHhCCCEEEEEeccchhccCccHH----HHHHHHHHHHhcc-----cccChhhcccccHHH
Confidence 6776 5555 789999999999999877766676666666655 4567778888855 222233347778888
Q ss_pred hhhhhhccccCCCCCCC-CCCCCCC
Q 048169 222 LSAEVIDTKIINPYPAR-PTPLPEI 245 (275)
Q Consensus 222 l~~~~~~~~~~~~~p~~-p~p~pe~ 245 (275)
|..++ .-.+++||.. |.+.|+.
T Consensus 173 L~~r~--~~Vii~~~sp~~~~~~~l 195 (306)
T KOG4306|consen 173 LWERV--QQVIIPYPSPKPLRYPFL 195 (306)
T ss_pred HHhcc--eEEEEecCCcccccCCcc
Confidence 88443 3455666655 6666653
No 35
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.25 E-value=97 Score=27.91 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=56.9
Q ss_pred ccccccCCCeEEeecCCh-hhhhhc-----cC-CCccEEeecCccchHhhhcChHHHHHHHHhhccCCCCCccEEEEeec
Q 048169 19 TGAGQESIELLYVYDSTP-ELLPAA-----SH-SGLPLAVPVSEKNLDEISSSVIMAESWLRTYVLPHYPATKITTIVVG 91 (275)
Q Consensus 19 ~~~ks~~I~~VRLyDad~-~vL~Al-----ag-TgI~V~VgVpN~~L~~lAss~~aA~~WV~~NV~py~P~t~I~~IaVG 91 (275)
+++++..-=++.|||++. +.++-+ +| -|+-+|-.+.||+ |-.+.++|+-. ..+|---++.-|.||
T Consensus 62 Tvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNee------Sf~svqdw~tq--Iktysw~naqvilvg 133 (193)
T KOG0093|consen 62 TVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNSVQDWITQ--IKTYSWDNAQVILVG 133 (193)
T ss_pred EeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH------HHHHHHHHHHH--heeeeccCceEEEEe
Confidence 344444444677899874 444433 34 3899999999984 55677889753 334466788899999
Q ss_pred ccccccCCCcccchhhHHHHHHHHHHHHhcCCC
Q 048169 92 NNLFCQKQQDHNLGLILPSLKNMYHSLKRWGLE 124 (275)
Q Consensus 92 NEVl~~~~~~~~~~~LvPAM~NI~~AL~~~GL~ 124 (275)
|..-.. . ..+++.=+ .+.-...+|++
T Consensus 134 nKCDmd--~----eRvis~e~-g~~l~~~LGfe 159 (193)
T KOG0093|consen 134 NKCDMD--S----ERVISHER-GRQLADQLGFE 159 (193)
T ss_pred cccCCc--c----ceeeeHHH-HHHHHHHhChH
Confidence 985432 1 23444433 44455667763
No 36
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.14 E-value=69 Score=28.15 Aligned_cols=91 Identities=15% Similarity=0.294 Sum_probs=54.6
Q ss_pred EEee-cCC-----hhhhhhccCCCccEEeecCccchH----------hhhcChHHHHHHHHhhccCCCCCccEEE-Eee-
Q 048169 29 LYVY-DST-----PELLPAASHSGLPLAVPVSEKNLD----------EISSSVIMAESWLRTYVLPHYPATKITT-IVV- 90 (275)
Q Consensus 29 VRLy-Dad-----~~vL~AlagTgI~V~VgVpN~~L~----------~lAss~~aA~~WV~~NV~py~P~t~I~~-IaV- 90 (275)
++|| |+| .++.++-..+|++|++= .|.-+. -+.+..++|+.|+.++.-+. ++-||. |-.
T Consensus 2 ~~I~VDADACPVk~~i~r~A~r~~~~v~~V-an~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g--DlVVT~Di~LA 78 (150)
T COG1671 2 MTIWVDADACPVKDEIYRVAERMGLKVTFV-ANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG--DLVVTADIPLA 78 (150)
T ss_pred ceEEEeCCCCchHHHHHHHHHHhCCeEEEE-eCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC--CEEEECchHHH
Confidence 5677 777 36777777789888763 333333 23345799999999998876 333321 111
Q ss_pred ------cccccccCCCccc----chhhHHHHHHHHHHHHhcCCC
Q 048169 91 ------GNNLFCQKQQDHN----LGLILPSLKNMYHSLKRWGLE 124 (275)
Q Consensus 91 ------GNEVl~~~~~~~~----~~~LvPAM~NI~~AL~~~GL~ 124 (275)
|--|+.. .+..+ .. -.=+|+++..-|++.|..
T Consensus 79 ~~ll~kg~~v~~p-rGr~y~~~nI~-~~L~~R~~~~~lR~~G~~ 120 (150)
T COG1671 79 SLLLDKGAAVLNP-RGRLYTEENIG-ERLAMRDFMAKLRRQGKK 120 (150)
T ss_pred HHHHhcCCEEECC-CCcccCHhHHH-HHHHHHHHHHHHHHhccc
Confidence 1112211 11111 22 345899999999999963
No 37
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=20.90 E-value=67 Score=21.64 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.6
Q ss_pred cchhHHHHHHHHHhhhcccc
Q 048169 2 LKLLWLFHIFFLCFLGFTGA 21 (275)
Q Consensus 2 ~k~~~l~~~~~l~~l~~~~~ 21 (275)
-|+.|+..++|+.++|...+
T Consensus 21 ~k~~W~~~i~~~P~iG~i~Y 40 (46)
T PF13396_consen 21 SKILWLIVILFFPIIGPILY 40 (46)
T ss_pred hhhHHHHHHHHHHHHHHhhe
Confidence 48899999999999997653
No 38
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=20.88 E-value=65 Score=32.19 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=31.6
Q ss_pred hcccccccCCCeEEeecCChhhhhhccCCCccEEeec
Q 048169 17 GFTGAGQESIELLYVYDSTPELLPAASHSGLPLAVPV 53 (275)
Q Consensus 17 ~~~~~ks~~I~~VRLyDad~~vL~AlagTgI~V~VgV 53 (275)
|-..+|..||++|||..-+|+=..+|.+-||+|+=.+
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 3456788999999999999999999999999997444
No 39
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=20.41 E-value=98 Score=28.24 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=26.8
Q ss_pred hhHHHHHHHHhhcC-CceEecCCCCCccCCCCCccccchHH---HHHHHhCCCCCC
Q 048169 152 QVIKPLLQFLHTAN-STYSIIPPPKLSPLSDKTTIFASSYL---ESMKKLGFLTVN 203 (275)
Q Consensus 152 ~vm~piL~FL~~tg-SPfmVNvYPyFay~~np~~i~lD~~~---~amkk~G~~~~n 203 (275)
.+.+-+-+|+...| .+..||+-|--....=+-.++..+++ +.|++.|. ++|
T Consensus 11 T~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~L-GPN 65 (238)
T PF03029_consen 11 TFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGL-GPN 65 (238)
T ss_dssp HHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T---HH
T ss_pred HHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCc-CCc
Confidence 57788889988875 46899998855433223345555554 77888777 544
Done!