BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048171
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L6N|A Chain A, Nmr Solution Structure Of The Protein Yp_001092504.1
Length = 132
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 14 QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
Q+EI F NG +FTLS E LR++SP+A+ + G ++ +++V I + PVGNY V++
Sbjct: 22 QLEISFDNGQQFTLSCELLRVYSPSAE--VHGHGNPVLVTHKKNVNINAITPVGNYAVKL 79
Query: 74 VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDP 116
VFDD H TG+YSW Y L SN+ L NY+ L+ SR+P
Sbjct: 80 VFDDGHDTGLYSWKVLYDLASNQVDLWENYLARLRAAKASREP 122
>pdb|2L6P|A Chain A, Nmr Solution Structure Of The Protein Np_253742.1
Length = 124
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 25 FTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIY 84
+ L AE+LR+HSP+A+ ++ G + +G+ +VG++ EP G Y +++ FDD H +G++
Sbjct: 26 YDLPAEFLRVHSPSAE--VQGHGNPVLQYGKLNVGLVGVEPAGQYALKLSFDDGHDSGLF 83
Query: 85 SWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118
+WDY Y L + K L +Y+ L G SRDP +
Sbjct: 84 TWDYLYELATRKDQLWADYLAELASAGKSRDPDE 117
>pdb|3LUU|A Chain A, Crystal Structure Of Protein With Unknown Function Which
Belongs To Pfam Duf971 Family (afe_2189) From
Acidithiobacillus Ferrooxidans Atcc 23270 At 1.93 A
Resolution
Length = 101
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 16 EIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVF 75
E+++A+G L+ E+LR+ P A+ K + +++ G+ HV ++ PVG+Y V++ F
Sbjct: 22 EVDWADGHTSRLTFEHLRVECPCAECKGHTPDQAQIVTGKEHVSVVEVVPVGHYAVQLHF 81
Query: 76 DDLHKTGIYSWDYFYYLGSN 95
D H TGI++W+Y L +
Sbjct: 82 SDGHNTGIFTWEYLRRLDAE 101
>pdb|2OGT|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.8
Length = 498
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 31 YLRIHSPAADGKIRSV 46
YL I SPAADGK R V
Sbjct: 86 YLNIWSPAADGKKRPV 101
>pdb|2OGS|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.2
Length = 498
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 31 YLRIHSPAADGKIRSV 46
YL I SPAADGK R V
Sbjct: 86 YLNIWSPAADGKKRPV 101
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
Length = 495
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 67 GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF--TLMRNYIKTL 107
GNYG+ IV + WDYFY G+ +F + +R Y T+
Sbjct: 32 GNYGLPIVGPIKDR-----WDYFYDQGAEEFFKSRIRKYNSTV 69
>pdb|1P35|A Chain A, Crystal Structure Of Baculovirus P35
pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35
pdb|1P35|C Chain C, Crystal Structure Of Baculovirus P35
Length = 299
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 54 GRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF 97
G V P+GN + +++ TG+Y +D Y+ S +F
Sbjct: 161 GSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQF 204
>pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 COMPLEX
Length = 299
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 54 GRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF 97
G V P+GN + +++ TG+Y +D Y+ S +F
Sbjct: 162 GSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQF 205
>pdb|2FUN|A Chain A, Alternative P35-Caspase-8 Complex
pdb|2FUN|C Chain C, Alternative P35-Caspase-8 Complex
Length = 298
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 54 GRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF 97
G V P+GN + +++ TG+Y +D Y+ S +F
Sbjct: 161 GSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQF 204
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 67 GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF--TLMRNYIKTL 107
GNYG+ IV + WDYFY G+ +F + +R Y T+
Sbjct: 32 GNYGLPIVGPIKDR-----WDYFYDQGAEEFFKSRIRKYNSTV 69
>pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 54 GRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF 97
G V P+GN + +++ TG+Y +D Y+ S +F
Sbjct: 161 GSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQF 204
>pdb|1I3S|A Chain A, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|B Chain B, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|C Chain C, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 54 GRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF 97
G V P+GN + +++ TG+Y +D Y+ S +F
Sbjct: 161 GSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQF 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,514,319
Number of Sequences: 62578
Number of extensions: 137102
Number of successful extensions: 271
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 14
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)