BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048171
         (120 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B8F9W2|Y1358_DESAA UPF0042 nucleotide-binding protein Dalk_1358 OS=Desulfatibacillum
           alkenivorans (strain AK-01) GN=Dalk_1358 PE=3 SV=1
          Length = 287

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 74  VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRD 115
           VF DL   G Y+++  + L S++ TL+R Y +T ++H LS+D
Sbjct: 75  VFKDLEDQG-YAFEIIF-LESDEDTLIRRYSETRRQHPLSKD 114


>sp|A1W6E1|SYC_ACISJ Cysteine--tRNA ligase OS=Acidovorax sp. (strain JS42) GN=cysS PE=3
           SV=1
          Length = 458

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 25  FTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEP 65
           F L+ E  R  SPAA G ++++GG        H+G++ A+P
Sbjct: 365 FDLAGEVNRSKSPAAAGLLKALGG--------HLGLLQADP 397


>sp|Q05FH9|RPOC_CARRP DNA-directed RNA polymerase subunit beta' OS=Carsonella ruddii
           (strain PV) GN=rpoC PE=3 SV=1
          Length = 1292

 Score = 28.9 bits (63), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 46  VGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYY 91
           +   K++     VGI+SA+ +G  G ++     H  G+ S  YF+Y
Sbjct: 831 LSTNKIVLIGVSVGIISAQSIGEPGTQLTMRTFHTGGVAS--YFFY 874


>sp|Q5S2C4|NCKP1_ARATH Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2
          Length = 1425

 Score = 28.9 bits (63), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 40  DGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFD 76
           D  I+ V G  ++F  RH    S  PVG Y    V D
Sbjct: 943 DNIIKDVSGAGILFAPRHKYFKSTRPVGGYFAESVTD 979


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.143    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,505,078
Number of Sequences: 539616
Number of extensions: 1813935
Number of successful extensions: 3801
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3799
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)