Query 048171
Match_columns 120
No_of_seqs 113 out of 625
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3536 Uncharacterized protei 100.0 6E-36 1.3E-40 207.2 10.8 109 10-118 12-120 (120)
2 PF06155 DUF971: Protein of un 100.0 2.8E-33 6.1E-38 187.7 8.4 82 9-90 6-89 (89)
3 TIGR02409 carnitine_bodg gamma 99.8 1.1E-21 2.3E-26 159.3 6.4 78 15-93 2-82 (366)
4 KOG3888 Gamma-butyrobetaine,2- 99.8 6E-20 1.3E-24 149.2 2.0 96 5-101 18-130 (407)
5 TIGR02410 carnitine_TMLD trime 99.7 6.5E-18 1.4E-22 137.4 4.2 66 26-93 1-71 (362)
6 KOG3889 Predicted gamma-butyro 99.4 4.2E-13 9.1E-18 107.0 4.7 81 23-105 16-107 (371)
7 PF06155 DUF971: Protein of un 97.3 0.00018 3.9E-09 47.8 2.9 36 62-98 2-38 (89)
8 KOG3888 Gamma-butyrobetaine,2- 96.5 0.002 4.4E-08 53.4 2.9 33 10-42 82-114 (407)
9 TIGR02410 carnitine_TMLD trime 95.5 0.013 2.9E-07 47.8 3.4 27 11-37 46-72 (362)
10 TIGR02409 carnitine_bodg gamma 94.5 0.05 1.1E-06 44.4 4.0 25 13-37 59-83 (366)
11 PF10387 DUF2442: Protein of u 89.0 0.19 4.2E-06 32.2 1.0 29 60-89 1-29 (79)
12 PF14081 DUF4262: Domain of un 74.7 1.8 3.8E-05 30.2 1.3 16 70-87 106-121 (125)
13 PF07593 UnbV_ASPIC: ASPIC and 73.3 3.2 6.9E-05 26.1 2.2 16 13-28 45-60 (71)
14 KOG3889 Predicted gamma-butyro 69.7 4.5 9.7E-05 33.1 2.7 29 8-36 58-86 (371)
15 cd00034 ChSh Chromo Shadow Dom 69.0 12 0.00026 22.6 4.0 27 11-37 14-40 (54)
16 COG3536 Uncharacterized protei 66.5 12 0.00025 26.5 3.9 37 60-97 5-42 (120)
17 PF10387 DUF2442: Protein of u 64.4 7.7 0.00017 24.6 2.6 26 7-32 4-29 (79)
18 PF10272 Tmpp129: Putative tra 64.4 2.7 5.8E-05 35.0 0.5 20 23-42 328-347 (358)
19 smart00300 ChSh Chromo Shadow 60.8 13 0.00029 22.8 3.1 27 11-37 20-46 (61)
20 KOG3899 Uncharacterized conser 58.1 4.2 9.2E-05 33.4 0.6 20 24-43 343-362 (381)
21 cd03578 NTR_netrin-4_like NTR 54.4 21 0.00046 24.9 3.6 56 19-78 44-99 (111)
22 PF08940 DUF1918: Domain of un 47.0 15 0.00032 23.0 1.6 19 67-85 33-52 (58)
23 PF01393 Chromo_shadow: Chromo 44.9 41 0.00088 20.6 3.4 28 10-37 15-43 (58)
24 COG5031 COQ4 Uncharacterized p 41.1 36 0.00079 26.8 3.3 42 76-119 76-117 (235)
25 cd06890 PX_Bem1p The phosphoin 40.4 50 0.0011 22.5 3.7 26 58-83 3-31 (112)
26 PF11121 DUF2639: Protein of u 36.1 24 0.00053 20.3 1.3 14 103-116 8-21 (40)
27 cd06889 PX_NoxO1 The phosphoin 35.2 47 0.001 23.5 2.9 17 69-85 22-38 (121)
28 COG3254 Uncharacterized conser 34.5 26 0.00057 24.3 1.5 17 97-113 23-39 (105)
29 cd04032 C2_Perforin C2 domain 34.1 14 0.00029 25.9 0.0 7 33-39 3-9 (127)
30 TIGR02625 YiiL_rotase L-rhamno 33.9 31 0.00067 23.5 1.8 16 98-113 22-37 (102)
31 cd04508 TUDOR Tudor domains ar 33.0 90 0.002 17.2 3.5 27 7-33 20-47 (48)
32 smart00333 TUDOR Tudor domain. 31.2 96 0.0021 17.7 3.5 30 6-35 23-53 (57)
33 PF05336 DUF718: Domain of unk 29.8 44 0.00094 22.6 2.0 23 87-113 16-38 (106)
34 PF12558 DUF3744: ATP-binding 29.2 39 0.00084 21.5 1.6 15 101-115 13-27 (74)
35 PF13953 PapC_C: PapC C-termin 26.8 68 0.0015 19.7 2.3 20 10-29 40-61 (68)
36 PF08098 ATX_III: Anemonia sul 26.5 23 0.0005 18.5 0.1 9 34-42 2-10 (27)
37 PF13963 Transpos_assoc: Trans 25.1 27 0.00058 22.3 0.2 11 33-43 37-47 (77)
38 PF07620 SLEI_Leptospira: SLEI 24.3 21 0.00045 16.7 -0.3 6 30-35 3-8 (16)
39 PRK08351 DNA-directed RNA poly 23.9 42 0.00091 21.0 0.9 37 37-73 17-60 (61)
40 PF12690 BsuPI: Intracellular 22.2 1.7E+02 0.0037 18.8 3.7 27 3-29 4-30 (82)
41 PF07076 DUF1344: Protein of u 21.6 1E+02 0.0022 19.3 2.4 20 10-29 12-31 (61)
42 cd06887 PX_p47phox The phospho 21.3 69 0.0015 22.4 1.7 28 57-84 3-36 (118)
43 PF13619 KTSC: KTSC domain 21.1 1.3E+02 0.0029 18.0 2.8 18 11-28 14-31 (60)
44 PF13837 Myb_DNA-bind_4: Myb/S 20.2 75 0.0016 19.9 1.7 23 94-116 31-53 (90)
45 PRK08445 hypothetical protein; 20.2 1.1E+02 0.0025 24.8 3.1 45 71-116 91-159 (348)
No 1
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=6e-36 Score=207.19 Aligned_cols=109 Identities=43% Similarity=0.748 Sum_probs=105.8
Q ss_pred cCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171 10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF 89 (120)
Q Consensus 10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL 89 (120)
.+.+.|.|+|+||..+++|+..||-.||||+|..+..+|+.+.....+|+|..|+++|||||+|.|+|||.+|||+|.||
T Consensus 12 k~r~~L~l~f~dg~~~~L~ae~LRv~sPsAEvqghgp~q~v~v~gkr~V~i~~i~p~GnYavri~FdDgHDsGiy~W~YL 91 (120)
T COG3536 12 KDRKVLSLTFADGAPFRLPAEFLRVLSPSAEVQGHGPGQRVLVPGKRNVQIRDIEPVGNYAVRILFDDGHDSGIYTWAYL 91 (120)
T ss_pred ccCcEEEEEeCCCCcccCCHHHHHhcCchHHhcccCCCCceeeeccccceEEEeEecCceEEEEEecCCcccCcccHHHH
Confidence 56688999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCCCCC
Q 048171 90 YYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118 (120)
Q Consensus 90 r~~~~~~~~~W~~y~~~~~~~~~~~~~~~ 118 (120)
++++..++.+|++||++|+++|+|||+||
T Consensus 92 ~~lg~~~d~lw~~Yl~eLA~~G~sRd~~~ 120 (120)
T COG3536 92 HELGEEKDALWQAYLDELAAAGLSRDPPE 120 (120)
T ss_pred HHHhhhhhHHHHHHHHHHHHcccccCCCC
Confidence 99999999999999999999999999986
No 2
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=100.00 E-value=2.8e-33 Score=187.67 Aligned_cols=82 Identities=32% Similarity=0.542 Sum_probs=69.8
Q ss_pred ecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeee--eecccceeeeEEEEecCeeEEEEeCCCCceecCCH
Q 048171 9 LYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKV--IFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSW 86 (120)
Q Consensus 9 ~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l--~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~ 86 (120)
..+++.|+|+|+||.++.||+.|||+|||||.|+++.++|+++ ..++.+|+|.+|+++|+|+|+|.|+|||.+|||+|
T Consensus 6 ~~~~~~l~i~w~DG~~~~~~~~~LRd~C~Ca~C~~~~~~~~~~~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~sgiY~~ 85 (89)
T PF06155_consen 6 DKDERHLEIEWSDGQESRFPYEWLRDNCPCAECRGEETGQRRLDTADIPPDVRPKSIEPVGNYALRITWSDGHDSGIYPW 85 (89)
T ss_dssp ECCTTEEEEEETTSEEEEEEHHHHHHT-SSSSTCSTTTTEE-----GCGTTTTEEEEEEETTTEEEEEETTSB---EEEH
T ss_pred ecCCCEEEEEECCCCEEEECHHHHhccCCChhhccccccCccccccccCCCceEeEEEECCCCEEEEEECCCCceeEecH
Confidence 4567999999999999999999999999999999777777743 35799999999999999999999999999899999
Q ss_pred HHHH
Q 048171 87 DYFY 90 (120)
Q Consensus 87 ~wLr 90 (120)
+|||
T Consensus 86 ~~Lr 89 (89)
T PF06155_consen 86 EWLR 89 (89)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9996
No 3
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=99.85 E-value=1.1e-21 Score=159.33 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=68.5
Q ss_pred EEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEecC-eeEEEEeCCCCceecCCHHHHHh
Q 048171 15 VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVGN-YGVRIVFDDLHKTGIYSWDYFYY 91 (120)
Q Consensus 15 L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g~-yal~I~WsDGH~sgiy~~~wLr~ 91 (120)
|.|.|+||.+++||++||||||||+.|+++.++|+.+. .+|.+|+|.+++++++ +.+.|.|+|||. |+|+++||++
T Consensus 2 l~v~w~dg~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~~~~~~~i~w~DgH~-s~y~~~wL~~ 80 (366)
T TIGR02409 2 VNVKWQDGKTSRFPAIWLRDNCPCPDCYTISNGARKLLVLDIPVEINIRKLWIDDDGNLVVIFWPDGHL-SEFPAEWLKK 80 (366)
T ss_pred eEEEeCCCCEeeecCeEeecCCCCCCccCcccCCccCchhhcCCcccceEEEEcCCCcEEEEEecCCCc-eEcCHHHHhh
Confidence 78999999999999999999999999997666776543 4689999999999863 468999999997 5999999998
Q ss_pred hc
Q 048171 92 LG 93 (120)
Q Consensus 92 ~~ 93 (120)
++
T Consensus 81 ~~ 82 (366)
T TIGR02409 81 RC 82 (366)
T ss_pred cc
Confidence 75
No 4
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.77 E-value=6e-20 Score=149.21 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=80.9
Q ss_pred eeeeecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEe-cCeeEEEEeCCCCce
Q 048171 5 LCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPV-GNYGVRIVFDDLHKT 81 (120)
Q Consensus 5 ~~~~~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~-g~yal~I~WsDGH~s 81 (120)
.+.+...++.++|.|.||....||.+||||||||+.|+++.++.+++. ..+.+|.|.++.++ .+..|.|.|+|||.
T Consensus 18 ~a~~~n~~~iv~v~~~d~~~~~fp~iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~- 96 (407)
T KOG3888|consen 18 SAAAANRSHIVQVPWFDRKSLTFPFIWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHH- 96 (407)
T ss_pred hhhhcCCcceEeecccCCCcccccceeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCc-
Confidence 344556778899999999999999999999999999998888888754 35778889998887 33489999999996
Q ss_pred ecCCHHHHHhhc--------------cCchHHHH
Q 048171 82 GIYSWDYFYYLG--------------SNKFTLMR 101 (120)
Q Consensus 82 giy~~~wLr~~~--------------~~~~~~W~ 101 (120)
|.|+++||++++ ++..++|.
T Consensus 97 s~Fpl~wlker~fs~~~~~~~~r~~yrp~~qlWg 130 (407)
T KOG3888|consen 97 SQFPLQWLKERCFSSQVRQRYLREVYRPPPQLWG 130 (407)
T ss_pred ccCCHHHHHhhCcchHHHHHHHHHhcCCchhhcc
Confidence 689999999887 66667776
No 5
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=99.70 E-value=6.5e-18 Score=137.40 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=55.8
Q ss_pred eechHHHhhcCCCCcceecCCCCeeee--ecc---cceeeeEEEEecCeeEEEEeCCCCceecCCHHHHHhhc
Q 048171 26 TLSAEYLRIHSPAADGKIRSVGGEKVI--FGR---RHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLG 93 (120)
Q Consensus 26 ~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~---~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wLr~~~ 93 (120)
.||++||||||+|+.|+++.++||.+. .++ .+|.+.++.++++ .|+|+|+|||. |.|+++||++++
T Consensus 1 ~f~~iWLRD~c~c~~c~~~~t~qRl~~~~~i~~~~~~i~~~~~~~~~~-~l~i~W~dgh~-s~y~~~wL~~~~ 71 (362)
T TIGR02410 1 IFHNVWLRDNCTCQECYHLATHQRLLNSFDITSLSEDIKPATVIIDED-TLRVTWPDGHV-SKFKEDWLIRHS 71 (362)
T ss_pred CCCCeeeecCCCCCccCCCCCCCcccchhhCCCcccCccccEEEEeCC-eEEEEecCCCc-eecCHHHHHhcc
Confidence 489999999999999997666666542 344 8999999998876 59999999996 689999999876
No 6
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.38 E-value=4.2e-13 Score=106.96 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=67.1
Q ss_pred CEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHHHhhcc------
Q 048171 23 SKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGS------ 94 (120)
Q Consensus 23 ~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wLr~~~~------ 94 (120)
....+|++||||+|+|+.|++-++.||+.. +++..|.|..|.+++- .|+|+|+|||. +-|..+|+-+...
T Consensus 16 ~~~~~~~vWLRDHCrs~~cyn~~TnQR~~D~~sl~~~i~p~~v~~De~-tLq~~W~DgH~-skydl~~i~~~~~e~g~~s 93 (371)
T KOG3889|consen 16 SKLIMPFVWLRDHCRSQKCYNLPTNQRKCDITSLSKIIHPNQVIIDEA-TLQIVWIDGHQ-SKYDLGNIIREGKEEGNVS 93 (371)
T ss_pred ceEEeeeeehhhhcchhhhcCCccccccccccccchhcCcceEEEcCc-EEEEEeccccc-cccchhHHhhhhhhhcccc
Confidence 467899999999999999998888888854 4688899999999875 69999999997 5899999976652
Q ss_pred ---CchHHHHHHHH
Q 048171 95 ---NKFTLMRNYIK 105 (120)
Q Consensus 95 ---~~~~~W~~y~~ 105 (120)
...++|-+-+.
T Consensus 94 k~~~~~~lWNs~i~ 107 (371)
T KOG3889|consen 94 KDNKIYELWNSSIS 107 (371)
T ss_pred cccccccchhhHHH
Confidence 23678984443
No 7
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=97.35 E-value=0.00018 Score=47.78 Aligned_cols=36 Identities=6% Similarity=0.048 Sum_probs=26.8
Q ss_pred EEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171 62 SAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT 98 (120)
Q Consensus 62 ~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~ 98 (120)
+|++. ++..|.|.|+||+. +.|++.|||.+|..+.+
T Consensus 2 ~i~l~~~~~~l~i~w~DG~~-~~~~~~~LRd~C~Ca~C 38 (89)
T PF06155_consen 2 EIKLDKDERHLEIEWSDGQE-SRFPYEWLRDNCPCAEC 38 (89)
T ss_dssp EEEEECCTTEEEEEETTSEE-EEEEHHHHHHT-SSSST
T ss_pred eEEEecCCCEEEEEECCCCE-EEECHHHHhccCCChhh
Confidence 34443 34589999999996 68999999999955544
No 8
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=96.51 E-value=0.002 Score=53.41 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=29.2
Q ss_pred cCCceEEEEeCCCCEEeechHHHhhcCCCCcce
Q 048171 10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGK 42 (120)
Q Consensus 10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~ 42 (120)
.+.+.|.|+|+||+.++||..|||+.|....-.
T Consensus 82 ed~k~l~I~W~Dgh~s~Fpl~wlker~fs~~~~ 114 (407)
T KOG3888|consen 82 EDRKSLVIKWSDGHHSQFPLQWLKERCFSSQVR 114 (407)
T ss_pred ccCcEEEEEecCCCcccCCHHHHHhhCcchHHH
Confidence 456899999999999999999999999888643
No 9
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=95.52 E-value=0.013 Score=47.81 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCceEEEEeCCCCEEeechHHHhhcCC
Q 048171 11 RLFQVEIEFANGSKFTLSAEYLRIHSP 37 (120)
Q Consensus 11 ~~~~L~V~W~DG~~~~~~~~wLRdnCp 37 (120)
.++.|+|+|+||+.++|+.-|||.+|.
T Consensus 46 ~~~~l~i~W~dgh~s~y~~~wL~~~~~ 72 (362)
T TIGR02410 46 DEDTLRVTWPDGHVSKFKEDWLIRHSY 72 (362)
T ss_pred eCCeEEEEecCCCceecCHHHHHhccC
Confidence 345699999999999999999999874
No 10
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=94.49 E-value=0.05 Score=44.40 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.7
Q ss_pred ceEEEEeCCCCEEeechHHHhhcCC
Q 048171 13 FQVEIEFANGSKFTLSAEYLRIHSP 37 (120)
Q Consensus 13 ~~L~V~W~DG~~~~~~~~wLRdnCp 37 (120)
..+.|.|+||+.+.|++.|||++|-
T Consensus 59 ~~~~i~w~DgH~s~y~~~wL~~~~~ 83 (366)
T TIGR02409 59 NLVVIFWPDGHLSEFPAEWLKKRCY 83 (366)
T ss_pred cEEEEEecCCCceEcCHHHHhhccC
Confidence 4589999999999999999999874
No 11
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=88.98 E-value=0.19 Score=32.18 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=23.6
Q ss_pred eeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171 60 IMSAEPVGNYGVRIVFDDLHKTGIYSWDYF 89 (120)
Q Consensus 60 ~~~v~~~g~yal~I~WsDGH~sgiy~~~wL 89 (120)
+++|.+.++|.|.|+|+||.. .+|+...+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~-~~~dl~~~ 29 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGET-RIFDLSPL 29 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-E-EEEECCCS
T ss_pred CeEEEEcCCcEEEEEEcCCCE-EEEEhHHh
Confidence 467888888999999999995 78998877
No 12
>PF14081 DUF4262: Domain of unknown function (DUF4262)
Probab=74.72 E-value=1.8 Score=30.22 Aligned_cols=16 Identities=25% Similarity=0.883 Sum_probs=14.0
Q ss_pred eEEEEeCCCCceecCCHH
Q 048171 70 GVRIVFDDLHKTGIYSWD 87 (120)
Q Consensus 70 al~I~WsDGH~sgiy~~~ 87 (120)
+|||.|+|.+ |+|||+
T Consensus 106 ~lQ~vwpD~~--G~~Pw~ 121 (125)
T PF14081_consen 106 ALQLVWPDRD--GRFPWE 121 (125)
T ss_pred EEEEEEECCC--CCCCCC
Confidence 5999999998 689985
No 13
>PF07593 UnbV_ASPIC: ASPIC and UnbV; InterPro: IPR011519 This conserved sequence is found associated with IPR001440 from INTERPRO in several paralogous proteins in Rhodopirellula baltica. It is also found associated with IPR000413 from INTERPRO in several eukaryotic integrin-like proteins (e.g. human ASPIC Q9NQ78 from SWISSPROT) and in several other bacterial proteins (e.g. Q84HN1 from SWISSPROT) [].
Probab=73.34 E-value=3.2 Score=26.11 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.3
Q ss_pred ceEEEEeCCCCEEeec
Q 048171 13 FQVEIEFANGSKFTLS 28 (120)
Q Consensus 13 ~~L~V~W~DG~~~~~~ 28 (120)
+.|+|.|+||....+.
T Consensus 45 ~~v~V~WP~G~~~~~~ 60 (71)
T PF07593_consen 45 DSVEVRWPDGKVQTLE 60 (71)
T ss_pred EEEEEECCCCCEEEEE
Confidence 5699999999988764
No 14
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=69.74 E-value=4.5 Score=33.15 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=25.1
Q ss_pred eecCCceEEEEeCCCCEEeechHHHhhcC
Q 048171 8 LLYRLFQVEIEFANGSKFTLSAEYLRIHS 36 (120)
Q Consensus 8 ~~~~~~~L~V~W~DG~~~~~~~~wLRdnC 36 (120)
...++..|.|.|+||+.+.|..-|+-++-
T Consensus 58 v~~De~tLq~~W~DgH~skydl~~i~~~~ 86 (371)
T KOG3889|consen 58 VIIDEATLQIVWIDGHQSKYDLGNIIREG 86 (371)
T ss_pred EEEcCcEEEEEeccccccccchhHHhhhh
Confidence 34677889999999999999999998874
No 15
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=69.04 E-value=12 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCceEEEEeCCCCEEeechHHHhhcCC
Q 048171 11 RLFQVEIEFANGSKFTLSAEYLRIHSP 37 (120)
Q Consensus 11 ~~~~L~V~W~DG~~~~~~~~wLRdnCp 37 (120)
.+-.+-+.|.||.....|..-+..+||
T Consensus 14 g~l~fl~kwk~~~~~lVp~~~~~~k~P 40 (54)
T cd00034 14 GELTFLAKWKDGQASLVPNKELNVKCP 40 (54)
T ss_pred CeEEEEEEEeCCeEEEEEHHHHHhhCc
Confidence 445688899999999999999999976
No 16
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.50 E-value=12 Score=26.49 Aligned_cols=37 Identities=8% Similarity=-0.034 Sum_probs=27.4
Q ss_pred eeEEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCch
Q 048171 60 IMSAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKF 97 (120)
Q Consensus 60 ~~~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~ 97 (120)
|+++.+. ...-|.|+|.||-. ...+.++||-++-.++
T Consensus 5 P~~lrvsk~r~~L~l~f~dg~~-~~L~ae~LRv~sPsAE 42 (120)
T COG3536 5 PTELRVSKDRKVLSLTFADGAP-FRLPAEFLRVLSPSAE 42 (120)
T ss_pred CceeEEeccCcEEEEEeCCCCc-ccCCHHHHHhcCchHH
Confidence 4455554 34579999999996 6899999998874443
No 17
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=64.45 E-value=7.7 Score=24.57 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=20.1
Q ss_pred eeecCCceEEEEeCCCCEEeechHHH
Q 048171 7 LLLYRLFQVEIEFANGSKFTLSAEYL 32 (120)
Q Consensus 7 ~~~~~~~~L~V~W~DG~~~~~~~~wL 32 (120)
+...++-.|.|+|+||.+..++..++
T Consensus 4 V~~~~~~~L~v~f~dG~~~~~dl~~~ 29 (79)
T PF10387_consen 4 VKPLDDYRLRVTFSDGETRIFDLSPL 29 (79)
T ss_dssp EEEETTTEEEEEETTS-EEEEECCCS
T ss_pred EEEcCCcEEEEEEcCCCEEEEEhHHh
Confidence 44455569999999999999998666
No 18
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=64.40 E-value=2.7 Score=35.00 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=17.3
Q ss_pred CEEeechHHHhhcCCCCcce
Q 048171 23 SKFTLSAEYLRIHSPAADGK 42 (120)
Q Consensus 23 ~~~~~~~~wLRdnCpCa~C~ 42 (120)
+...-|..||+-.||||.|+
T Consensus 328 Qd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 328 QDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred CCCCChhhhhcCCCCCCCCc
Confidence 34567899999999999998
No 19
>smart00300 ChSh Chromo Shadow Domain.
Probab=60.76 E-value=13 Score=22.84 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCceEEEEeCCCCEEeechHHHhhcCC
Q 048171 11 RLFQVEIEFANGSKFTLSAEYLRIHSP 37 (120)
Q Consensus 11 ~~~~L~V~W~DG~~~~~~~~wLRdnCp 37 (120)
.+-.+.|.|.||....+|..-+..+||
T Consensus 20 G~l~flikwk~~~~~lVp~~~~~~k~P 46 (61)
T smart00300 20 GELTFLIKWKDDAASLVPNKEANVKCP 46 (61)
T ss_pred CeEEEEEEEeCCcEEEEEHHHHHHHCh
Confidence 345678899999999999999999976
No 20
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.11 E-value=4.2 Score=33.39 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=17.3
Q ss_pred EEeechHHHhhcCCCCccee
Q 048171 24 KFTLSAEYLRIHSPAADGKI 43 (120)
Q Consensus 24 ~~~~~~~wLRdnCpCa~C~~ 43 (120)
.-.+.+.|+|..|+||.|+.
T Consensus 343 ~~v~r~~~~~~~~~cp~cr~ 362 (381)
T KOG3899|consen 343 DNVYRYEYHRGSAQCPTCRK 362 (381)
T ss_pred cchhHHHHHhcCCCCcchhh
Confidence 44678999999999999983
No 21
>cd03578 NTR_netrin-4_like NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. Netrin-4 is a basement membrane component that is important in neural, kidney and vascular development. It may also be involved in regulating the outgrowth and shape of epithelial cells during lung branching morphogenesis.
Probab=54.40 E-value=21 Score=24.93 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=37.4
Q ss_pred eCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCC
Q 048171 19 FANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDL 78 (120)
Q Consensus 19 W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDG 78 (120)
..=|....++..|---.|+||. -..+++=|..+.+|.....+-++.+ .|.|.|.|.
T Consensus 44 i~RG~~~L~v~~~~~~~C~CPk---L~~g~~YLIlG~ed~~~~rL~i~~~-S~V~~Wrd~ 99 (111)
T cd03578 44 LSRGKRTLYPESWTSRGCTCPI---LNPGLEYLVAGHEDVRTGRLIVNMK-SFVQHWKPS 99 (111)
T ss_pred cccCceEEEeeccccccCcCCc---ccCCCEEEEEccCCCCCCcEEECCc-cEEEEhhHH
Confidence 3346666666667888999995 3446666666666665555555543 688999873
No 22
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=46.96 E-value=15 Score=22.96 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=11.7
Q ss_pred cCeeEEEEeCC-CCceecCC
Q 048171 67 GNYGVRIVFDD-LHKTGIYS 85 (120)
Q Consensus 67 g~yal~I~WsD-GH~sgiy~ 85 (120)
|+--..+.|+| ||.+-+||
T Consensus 33 G~PPY~VRw~D~Ghe~lv~P 52 (58)
T PF08940_consen 33 GSPPYLVRWDDTGHESLVFP 52 (58)
T ss_dssp S-S-EEEEETTTTEEEEE--
T ss_pred CCCCEEEEecCCCcEEEEeC
Confidence 43347899999 99865554
No 23
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=44.93 E-value=41 Score=20.56 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.5
Q ss_pred cCCceEEEEeCC-CCEEeechHHHhhcCC
Q 048171 10 YRLFQVEIEFAN-GSKFTLSAEYLRIHSP 37 (120)
Q Consensus 10 ~~~~~L~V~W~D-G~~~~~~~~wLRdnCp 37 (120)
..+-.+-|+|.+ |.....|..-++..||
T Consensus 15 ~G~l~~likwk~~~~~~~v~~~~~~~k~P 43 (58)
T PF01393_consen 15 NGELMFLIKWKNSGEKDLVPSKEANEKCP 43 (58)
T ss_dssp TSSEEEEEEETTSSSEEEEEHHHHHHHSH
T ss_pred CCcEEEEEEECCCCceEEeeHHHHHHHCc
Confidence 345668899999 8999999999999876
No 24
>COG5031 COQ4 Uncharacterized protein involved in ubiquinone biosynthesis [Coenzyme metabolism]
Probab=41.05 E-value=36 Score=26.77 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=34.8
Q ss_pred CCCCceecCCHHHHHhhccCchHHHHHHHHHHHHcCCCCCCCCC
Q 048171 76 DDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKK 119 (120)
Q Consensus 76 sDGH~sgiy~~~wLr~~~~~~~~~W~~y~~~~~~~~~~~~~~~~ 119 (120)
.|-=.++++..+.|+++ |..++=.-|.|.+++.|+++++.++
T Consensus 76 kerp~~~~~dl~~L~qL--P~~TLGyvYad~mk~~~~~P~~~~~ 117 (235)
T COG5031 76 KERPTLGVLDLDQLAQL--PENTLGYVYADWMKREGFDPDTRKP 117 (235)
T ss_pred HhCCCCcccCHHHHHhC--CCcchhhhhHHHHHHhcCCCCCCCC
Confidence 34336788999999887 7777778999999999999998765
No 25
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=40.37 E-value=50 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=17.4
Q ss_pred eeeeEEEEecC---eeEEEEeCCCCceec
Q 048171 58 VGIMSAEPVGN---YGVRIVFDDLHKTGI 83 (120)
Q Consensus 58 i~~~~v~~~g~---yal~I~WsDGH~sgi 83 (120)
+.+.++....+ |.|+|+|+||....+
T Consensus 3 ~~V~~~~~~~~~y~Y~i~v~~s~~~~~~v 31 (112)
T cd06890 3 ASVESVLLEDNRYWYRVRATLSDGKTRYL 31 (112)
T ss_pred EEEEEEEEECCEEEEEEEEEEcCCcEEEE
Confidence 45566665543 679999999975333
No 26
>PF11121 DUF2639: Protein of unknown function (DUF2639); InterPro: IPR022580 This family is conserved in the Bacillaceae family. Several members are named as being YflJ, but the function is not known.
Probab=36.11 E-value=24 Score=20.34 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.5
Q ss_pred HHHHHHHcCCCCCC
Q 048171 103 YIKTLKKHGLSRDP 116 (120)
Q Consensus 103 y~~~~~~~~~~~~~ 116 (120)
|..+|++.|+.+-+
T Consensus 8 ~V~eLKk~GI~~h~ 21 (40)
T PF11121_consen 8 YVKELKKLGIRRHE 21 (40)
T ss_pred HHHHHHHhCccccc
Confidence 78999999998876
No 27
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=35.16 E-value=47 Score=23.49 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=13.2
Q ss_pred eeEEEEeCCCCceecCC
Q 048171 69 YGVRIVFDDLHKTGIYS 85 (120)
Q Consensus 69 yal~I~WsDGH~sgiy~ 85 (120)
|.+.|.|+||-..-+|-
T Consensus 22 Y~i~V~wsdgs~~~iyR 38 (121)
T cd06889 22 YMFSVLWSDGSELFVYR 38 (121)
T ss_pred EEEEEEEcCCcEEEEEE
Confidence 88999999997654543
No 28
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=34.45 E-value=26 Score=24.34 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHcCCC
Q 048171 97 FTLMRNYIKTLKKHGLS 113 (120)
Q Consensus 97 ~~~W~~y~~~~~~~~~~ 113 (120)
...|++.++.|+++|++
T Consensus 23 ~~vWPE~~a~lk~agi~ 39 (105)
T COG3254 23 DAVWPELLALLKEAGIR 39 (105)
T ss_pred ccccHHHHHHHHHcCCc
Confidence 45799999999999985
No 29
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=34.15 E-value=14 Score=25.92 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=6.4
Q ss_pred hhcCCCC
Q 048171 33 RIHSPAA 39 (120)
Q Consensus 33 RdnCpCa 39 (120)
||||||-
T Consensus 3 ~~~~~~~ 9 (127)
T cd04032 3 RDNCPCV 9 (127)
T ss_pred CCCcccC
Confidence 8999997
No 30
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=33.95 E-value=31 Score=23.54 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCC
Q 048171 98 TLMRNYIKTLKKHGLS 113 (120)
Q Consensus 98 ~~W~~y~~~~~~~~~~ 113 (120)
..|++.++.|+++|+.
T Consensus 22 ~vWPEv~~~L~~~Gi~ 37 (102)
T TIGR02625 22 EIWPELKEVLKSHGAH 37 (102)
T ss_pred ccCHHHHHHHHHCCCe
Confidence 7799999999999985
No 31
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=32.98 E-value=90 Score=17.19 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=19.7
Q ss_pred eeecCCceEEEEeCC-CCEEeechHHHh
Q 048171 7 LLLYRLFQVEIEFAN-GSKFTLSAEYLR 33 (120)
Q Consensus 7 ~~~~~~~~L~V~W~D-G~~~~~~~~wLR 33 (120)
.....+..+.|.+-| |.+..++...||
T Consensus 20 ~~~~~~~~~~V~f~DyG~~~~v~~~~l~ 47 (48)
T cd04508 20 TSILSDGKVEVFFVDYGNTEVVPLSDLR 47 (48)
T ss_pred EEECCCCcEEEEEEcCCCcEEEeHHHcC
Confidence 333446778888888 888888877766
No 32
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=31.25 E-value=96 Score=17.72 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=20.7
Q ss_pred eeeecCCceEEEEeCC-CCEEeechHHHhhc
Q 048171 6 CLLLYRLFQVEIEFAN-GSKFTLSAEYLRIH 35 (120)
Q Consensus 6 ~~~~~~~~~L~V~W~D-G~~~~~~~~wLRdn 35 (120)
++....+....|.+.| |.+..++..-||--
T Consensus 23 I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l 53 (57)
T smart00333 23 IIKVDGEQLYEVFFIDYGNEEVVPPSDLRPL 53 (57)
T ss_pred EEEECCCCEEEEEEECCCccEEEeHHHeecC
Confidence 3444444778888888 88888887777643
No 33
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=29.77 E-value=44 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHhhccCchHHHHHHHHHHHHcCCC
Q 048171 87 DYFYYLGSNKFTLMRNYIKTLKKHGLS 113 (120)
Q Consensus 87 ~wLr~~~~~~~~~W~~y~~~~~~~~~~ 113 (120)
+|-+.|.. +|++.++.|+++|+.
T Consensus 16 eY~~~H~~----vWPEv~~~l~~~Gi~ 38 (106)
T PF05336_consen 16 EYKRRHAE----VWPEVLAALREAGIR 38 (106)
T ss_dssp HHHHCCCT------HHHHHHHHHCTEE
T ss_pred HHHHHHhc----cCHHHHHHHHHCCCe
Confidence 45555643 899999999999974
No 34
>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Probab=29.20 E-value=39 Score=21.50 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCCCC
Q 048171 101 RNYIKTLKKHGLSRD 115 (120)
Q Consensus 101 ~~y~~~~~~~~~~~~ 115 (120)
+=||.+|+.+|.+=.
T Consensus 13 PLYitALk~ag~~l~ 27 (74)
T PF12558_consen 13 PLYITALKYAGVDLT 27 (74)
T ss_pred cHHHHHHHHcCCCcc
Confidence 459999999998643
No 35
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=26.76 E-value=68 Score=19.72 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=14.1
Q ss_pred cCCceEEEEeCCC--CEEeech
Q 048171 10 YRLFQVEIEFANG--SKFTLSA 29 (120)
Q Consensus 10 ~~~~~L~V~W~DG--~~~~~~~ 29 (120)
.....|.|.|.++ ..-+++|
T Consensus 40 ~~~~~L~V~w~~~~~~~C~~~~ 61 (68)
T PF13953_consen 40 PPKGTLTVKWGDGANQQCQIDY 61 (68)
T ss_dssp -TCEEEEEESTSCTTSEEEEEE
T ss_pred CCCcEEEEEECCCCCCeEEEEe
Confidence 4678899999998 5555544
No 36
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=26.50 E-value=23 Score=18.54 Aligned_cols=9 Identities=33% Similarity=0.213 Sum_probs=1.5
Q ss_pred hcCCCCcce
Q 048171 34 IHSPAADGK 42 (120)
Q Consensus 34 dnCpCa~C~ 42 (120)
.-|||+.|.
T Consensus 2 sCCPCamc~ 10 (27)
T PF08098_consen 2 SCCPCAMCK 10 (27)
T ss_dssp -S--S----
T ss_pred cccccccce
Confidence 459998885
No 37
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=25.06 E-value=27 Score=22.32 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=8.9
Q ss_pred hhcCCCCccee
Q 048171 33 RIHSPAADGKI 43 (120)
Q Consensus 33 RdnCpCa~C~~ 43 (120)
.--|||..|..
T Consensus 37 ~i~CPC~~C~N 47 (77)
T PF13963_consen 37 MIRCPCRKCKN 47 (77)
T ss_pred ceECCchhhcc
Confidence 35799999984
No 38
>PF07620 SLEI_Leptospira: SLEI; InterPro: IPR011512 This entry represents a highly conserved sequence motif found at the C-terminal of some hypothetical proteins from Leptospira interrogans.
Probab=24.31 E-value=21 Score=16.70 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=3.7
Q ss_pred HHHhhc
Q 048171 30 EYLRIH 35 (120)
Q Consensus 30 ~wLRdn 35 (120)
.|||||
T Consensus 3 ~~~rdN 8 (16)
T PF07620_consen 3 RWLRDN 8 (16)
T ss_pred ccccCC
Confidence 466666
No 39
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=23.90 E-value=42 Score=21.04 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=18.7
Q ss_pred CCCcceecCCCCee---eeec-ccceeee---EEEEecCeeEEE
Q 048171 37 PAADGKIRSVGGEK---VIFG-RRHVGIM---SAEPVGNYGVRI 73 (120)
Q Consensus 37 pCa~C~~~~~~~~~---l~~~-~~di~~~---~v~~~g~yal~I 73 (120)
.||.|-....+.+- +..+ |.+-.+. .+..-|.|||.|
T Consensus 17 ~CP~Cgs~~~T~~W~G~viI~dPe~S~IAk~l~i~~pG~YAlkV 60 (61)
T PRK08351 17 RCPVCGSRDLSDEWFDLVIIIDVENSRIAKKLGAKVPGKYAIRV 60 (61)
T ss_pred cCCCCcCCccccccccEEEEeCCcHhHHHHHhCCCCCCeEEEEe
Confidence 58888643323321 1112 3322222 455568899986
No 40
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=22.25 E-value=1.7e+02 Score=18.83 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=18.5
Q ss_pred eeeeeeecCCceEEEEeCCCCEEeech
Q 048171 3 LTLCLLLYRLFQVEIEFANGSKFTLSA 29 (120)
Q Consensus 3 ~~~~~~~~~~~~L~V~W~DG~~~~~~~ 29 (120)
+++-+.+..+..+.+.+++|..+.|-.
T Consensus 4 ~~l~v~N~s~~~v~l~f~sgq~~D~~v 30 (82)
T PF12690_consen 4 FTLTVTNNSDEPVTLQFPSGQRYDFVV 30 (82)
T ss_dssp EEEEEEE-SSS-EEEEESSS--EEEEE
T ss_pred EEEEEEeCCCCeEEEEeCCCCEEEEEE
Confidence 456677888899999999999887755
No 41
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=21.58 E-value=1e+02 Score=19.34 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=15.1
Q ss_pred cCCceEEEEeCCCCEEeech
Q 048171 10 YRLFQVEIEFANGSKFTLSA 29 (120)
Q Consensus 10 ~~~~~L~V~W~DG~~~~~~~ 29 (120)
.+...+.|..+||++..+|.
T Consensus 12 id~~~~titLdDGksy~lp~ 31 (61)
T PF07076_consen 12 IDPETMTITLDDGKSYKLPE 31 (61)
T ss_pred EcCCceEEEecCCCEEECCC
Confidence 45567888888888887764
No 42
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=21.32 E-value=69 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=18.2
Q ss_pred ceeeeEEEEec--C----eeEEEEeCCCCceecC
Q 048171 57 HVGIMSAEPVG--N----YGVRIVFDDLHKTGIY 84 (120)
Q Consensus 57 di~~~~v~~~g--~----yal~I~WsDGH~sgiy 84 (120)
+|++.+++-.+ + |.|.|.|+||.+.-+|
T Consensus 3 ~~~~~~~~kr~~~~~~y~Y~i~v~~s~~~~~~v~ 36 (118)
T cd06887 3 HIALLGFEKRFVPSQHYVYMFLVKWQDLSEKLVY 36 (118)
T ss_pred eEEEEEEEEeecCCCcEEEEEEEEEcCCcEEEEE
Confidence 45566666542 1 6789999999754444
No 43
>PF13619 KTSC: KTSC domain
Probab=21.14 E-value=1.3e+02 Score=17.97 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=14.6
Q ss_pred CCceEEEEeCCCCEEeec
Q 048171 11 RLFQVEIEFANGSKFTLS 28 (120)
Q Consensus 11 ~~~~L~V~W~DG~~~~~~ 28 (120)
..+.|+|.+.+|...+|.
T Consensus 14 ~~~~L~V~F~~G~~Y~Y~ 31 (60)
T PF13619_consen 14 ETRTLEVEFKSGSVYRYF 31 (60)
T ss_pred CCCEEEEEEcCCCEEEEC
Confidence 357899999999977663
No 44
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=20.24 E-value=75 Score=19.87 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=14.8
Q ss_pred cCchHHHHHHHHHHHHcCCCCCC
Q 048171 94 SNKFTLMRNYIKTLKKHGLSRDP 116 (120)
Q Consensus 94 ~~~~~~W~~y~~~~~~~~~~~~~ 116 (120)
.....+|....+.|.+.|..|.+
T Consensus 31 ~~~~~~w~~Ia~~l~~~G~~rt~ 53 (90)
T PF13837_consen 31 KRNKKVWKEIAEELAEHGYNRTP 53 (90)
T ss_dssp S--HHHHHHHHHHHHHHC----H
T ss_pred ccchHHHHHHHHHHHHcCCCCCH
Confidence 44455899999999999998865
No 45
>PRK08445 hypothetical protein; Provisional
Probab=20.24 E-value=1.1e+02 Score=24.85 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=29.9
Q ss_pred EEEEeCCCCceecCCHHHHHhhcc------C--------ch----H------HHHHHHHHHHHcCCCCCC
Q 048171 71 VRIVFDDLHKTGIYSWDYFYYLGS------N--------KF----T------LMRNYIKTLKKHGLSRDP 116 (120)
Q Consensus 71 l~I~WsDGH~sgiy~~~wLr~~~~------~--------~~----~------~W~~y~~~~~~~~~~~~~ 116 (120)
-+|..++|.. ..++.+++.++.+ | .- . .-.+.|.+|+++|++|=+
T Consensus 91 ~~i~~~gg~~-~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~ 159 (348)
T PRK08445 91 TQILFQGGVH-PKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIP 159 (348)
T ss_pred CEEEEecCCC-CCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCC
Confidence 3567777765 3688888876541 1 00 0 126889999999999854
Done!