Query 048171
Match_columns 120
No_of_seqs 113 out of 625
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6n_A Uncharacterized protein 100.0 3.3E-41 1.1E-45 240.8 12.9 110 8-119 16-125 (132)
2 2l6p_A PHAC1, PHAC2 and PHAD g 100.0 1.8E-40 6.1E-45 234.6 12.0 107 10-119 12-118 (124)
3 3luu_A Uncharacterized protein 100.0 4.4E-33 1.5E-37 189.9 9.5 85 10-94 16-100 (101)
4 3o2g_A Gamma-butyrobetaine dio 99.9 4.8E-25 1.6E-29 178.9 9.4 89 5-95 8-98 (388)
5 3luu_A Uncharacterized protein 97.7 2.6E-05 9E-10 52.1 4.0 40 58-98 7-47 (101)
6 2l6n_A Uncharacterized protein 96.6 0.0017 5.8E-08 45.5 3.4 40 58-98 9-49 (132)
7 2l6p_A PHAC1, PHAC2 and PHAD g 95.9 0.0042 1.4E-07 43.0 2.7 30 11-40 66-96 (124)
8 3o2g_A Gamma-butyrobetaine dio 95.9 0.006 2.1E-07 49.0 3.8 37 61-98 7-44 (388)
9 2auw_A Hypothetical protein NE 83.9 0.64 2.2E-05 33.7 2.6 32 57-89 8-39 (170)
10 2qqr_A JMJC domain-containing 68.8 14 0.00048 25.1 5.8 73 5-80 25-102 (118)
11 2xdp_A Lysine-specific demethy 58.2 24 0.00081 24.1 5.4 71 5-79 26-102 (123)
12 1e0b_A SWI6 protein; chromatin 39.0 26 0.00088 21.4 2.8 27 11-37 25-51 (68)
13 3k8r_A Uncharacterized protein 37.3 29 0.00099 23.6 3.1 22 12-33 36-57 (124)
14 2x8n_A CV0863; non-uniform sam 35.7 42 0.0014 22.2 3.7 23 11-33 35-57 (111)
15 1jrj_A Exendin-4; Trp-CAGE, GL 34.3 24 0.00081 19.5 1.9 37 79-118 1-37 (39)
16 3omb_A Extracellular solute-bi 31.8 11 0.00037 30.2 0.2 19 96-114 503-521 (535)
17 2a7y_A Hypothetical protein RV 28.1 29 0.00099 22.2 1.8 19 67-85 36-55 (83)
18 1x8d_A Hypothetical protein YI 27.0 23 0.00077 23.2 1.2 24 86-113 16-39 (104)
19 4hcz_A PHD finger protein 1; p 26.7 84 0.0029 18.7 3.5 22 10-31 29-50 (58)
20 1g2y_A Hepatocyte nuclear fact 26.5 29 0.00098 18.3 1.3 18 99-116 8-25 (32)
21 3q4f_C DNA repair protein XRCC 25.4 43 0.0015 24.5 2.5 61 58-118 46-110 (186)
22 3w03_C DNA repair protein XRCC 25.3 73 0.0025 23.1 3.7 60 55-115 34-98 (184)
23 2ect_A Ring finger protein 126 25.2 54 0.0019 19.0 2.6 44 5-49 20-65 (78)
24 3mud_A DNA repair protein XRCC 22.5 56 0.0019 23.6 2.6 61 58-118 20-84 (175)
25 1x4j_A Ring finger protein 38; 21.0 1.2E+02 0.0042 17.3 3.6 39 5-43 28-68 (75)
26 3qt9_A Putative uncharacterize 20.9 28 0.00095 28.6 0.8 20 17-36 44-67 (427)
27 2iw0_A Chitin deacetylase; hyd 20.6 77 0.0026 23.1 3.2 44 69-113 42-100 (254)
28 2c71_A Glycoside hydrolase, fa 20.5 69 0.0024 22.8 2.8 42 70-112 6-59 (216)
No 1
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=100.00 E-value=3.3e-41 Score=240.75 Aligned_cols=110 Identities=42% Similarity=0.694 Sum_probs=102.0
Q ss_pred eecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHH
Q 048171 8 LLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWD 87 (120)
Q Consensus 8 ~~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~ 87 (120)
....++.|+|.|+||.++.||++|||+|||||+|+++. |+.+..++.+|.|.+|+++|+|+|+|+|+|||.||+|+|+
T Consensus 16 l~~~~~~L~v~w~DG~~~~~~~~wLRd~Cpcaec~~~~--qr~l~~~~~dv~i~~i~~vG~yaL~I~wsDGH~SGiYs~~ 93 (132)
T 2l6n_A 16 LKRKSRQLEISFDNGQQFTLSCELLRVYSPSAEVHGHG--NPVLVTHKKNVNINAITPVGNYAVKLVFDDGHDTGLYSWK 93 (132)
T ss_dssp EEGGGTEEEEEETTSCEEEEEHHHHHHSCSCSSSSSSS--CCCCCCCCSSCCEEEEEEETTTEEEEEETTTBCCCCEEHH
T ss_pred EecCCCEEEEEECCCCEEEeCHHHHHhcCCCcccCCcc--ccccccCCCCcceEEEEecCCceEEEEeCCCCccCEECHH
Confidence 33467899999999999999999999999999999654 7776678899999999999999999999999998899999
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCCCCCC
Q 048171 88 YFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKK 119 (120)
Q Consensus 88 wLr~~~~~~~~~W~~y~~~~~~~~~~~~~~~~ 119 (120)
||++++..+..+|++||++|+++|+|||+++.
T Consensus 94 ~L~~l~~~~~~~w~~yl~~l~~~g~~r~~~~~ 125 (132)
T 2l6n_A 94 VLYDLASNQVDLWENYLARLRAAKASREPLID 125 (132)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHTCCCCCCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCCCCccc
Confidence 99999999999999999999999999999875
No 2
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-40 Score=234.61 Aligned_cols=107 Identities=34% Similarity=0.732 Sum_probs=100.2
Q ss_pred cCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171 10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF 89 (120)
Q Consensus 10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL 89 (120)
..++.|+|.|+ |.++.||++|||+|||||+|+++ +|+.+...+.+|.|.+++++|+|+|+|+|+|||.+|+|+|+||
T Consensus 12 ~~~~~L~v~w~-G~~~~~~~~wLRd~Cpcaec~~~--~qr~l~~~~~dv~i~~i~~~G~yaL~I~wsDGH~sgiY~~~~L 88 (124)
T 2l6p_A 12 KASKTLTLRYG-EDSYDLPAEFLRVHSPSAEVQGH--GNPVLQYGKLNVGLVGVEPAGQYALKLSFDDGHDSGLFTWDYL 88 (124)
T ss_dssp TTTCEEEEEET-TEEEEEEHHHHHHTCCCSSCCSC--CCCCCCCSCTTCCEEEEEECSSSCEEEEETTSCCCCCCTTHHH
T ss_pred cCCCEEEEEEC-CEEEEeCHHHHHhcCCCcccCCC--CccccccCCCCcceEEEEEcCCceEEEEECCCCcceEECHHHH
Confidence 45788999999 99999999999999999999964 7777667789999999999999999999999998799999999
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCCCCCC
Q 048171 90 YYLGSNKFTLMRNYIKTLKKHGLSRDPHKK 119 (120)
Q Consensus 90 r~~~~~~~~~W~~y~~~~~~~~~~~~~~~~ 119 (120)
++++..+..+|++||++|+++|+|||+++.
T Consensus 89 ~~l~~~~~~~~~~y~~~l~~~g~~r~~~~~ 118 (124)
T 2l6p_A 89 YELATRKDQLWADYLAELASAGKSRDPDES 118 (124)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTCCSSTTCC
T ss_pred HHhhhhHHHHHHHHHHHHHHcCCCCCCccc
Confidence 999999999999999999999999999874
No 3
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=100.00 E-value=4.4e-33 Score=189.87 Aligned_cols=85 Identities=32% Similarity=0.640 Sum_probs=70.1
Q ss_pred cCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171 10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF 89 (120)
Q Consensus 10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL 89 (120)
.+++.|+|.|+||+++.||++|||+|||||+|+++.++|+.+..++.+|.|.+++++|+|+|+|+|+|||++|+|+|+||
T Consensus 16 ~~~~~L~v~w~DG~~~~~~~~wLRd~c~ca~c~~~~t~qr~l~~~~~~v~~~~i~~~g~yal~i~wsDGH~~s~Y~~~~L 95 (101)
T 3luu_A 16 MISRVMEVDWADGHTSRLTFEHLRVECPCAECKGHTPDQAQIVTGKEHVSVVEVVPVGHYAVQLHFSDGHNTGIFTWEYL 95 (101)
T ss_dssp TTTTEEEEEETTSCEEEEEHHHHHHTCCCC----------CCCCCCTTCCEEEEEEETTTEEEEEETTSCCCCEEEHHHH
T ss_pred CCCCEEEEEeCCCCEEEECHHHHHhhCCChhhcCccCCccccccCCCCcceeEEEECCCCeEEEEECCCCceeEECHHHH
Confidence 45689999999999999999999999999999988888887678899999999999999999999999997799999999
Q ss_pred Hhhcc
Q 048171 90 YYLGS 94 (120)
Q Consensus 90 r~~~~ 94 (120)
++++.
T Consensus 96 ~~~~~ 100 (101)
T 3luu_A 96 RRLDA 100 (101)
T ss_dssp HHHTT
T ss_pred HHhhh
Confidence 99874
No 4
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=99.92 E-value=4.8e-25 Score=178.93 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=77.5
Q ss_pred eeeeecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEecCeeEEEEeCCCCcee
Q 048171 5 LCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVGNYGVRIVFDDLHKTG 82 (120)
Q Consensus 5 ~~~~~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g~yal~I~WsDGH~sg 82 (120)
+..+..+++.|.|+|+||.++.||++|||||||||.|+++.++|+.+. .+|.+|++.+++++| |+|+|.|+|||. |
T Consensus 8 ~~~~~~~~~~l~v~w~dG~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~-~~l~i~w~dgH~-s 85 (388)
T 3o2g_A 8 KAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR-KKVYITWPDEHY-S 85 (388)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEHHHHHHTCCSTTTEEGGGTEECCCGGGCCTTCCCSEEEECS-SEEEEECTTSCE-E
T ss_pred eeeecCCCCEEEEEECCCCeeeeCHHHHHhcCCCccccCccccccccCHhhcCcccccceEEeeC-CEEEEEecCCCc-e
Confidence 455667889999999999999999999999999999997666655543 468999999999998 799999999995 7
Q ss_pred cCCHHHHHhhccC
Q 048171 83 IYSWDYFYYLGSN 95 (120)
Q Consensus 83 iy~~~wLr~~~~~ 95 (120)
+|+++||++++..
T Consensus 86 ~y~~~~L~~~~~~ 98 (388)
T 3o2g_A 86 EFQADWLKKRCFS 98 (388)
T ss_dssp EEEHHHHHHTCCS
T ss_pred EeCHHHHHhhcCC
Confidence 9999999998744
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=97.74 E-value=2.6e-05 Score=52.11 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=32.0
Q ss_pred eeeeEEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171 58 VGIMSAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT 98 (120)
Q Consensus 58 i~~~~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~ 98 (120)
..|++|.+. ++..|.|.|+|||. +.|++.|||.+|..+.+
T Consensus 7 ~~P~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~c~ca~c 47 (101)
T 3luu_A 7 TQPLEIRPLMISRVMEVDWADGHT-SRLTFEHLRVECPCAEC 47 (101)
T ss_dssp GCEEEEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCCC--
T ss_pred CCCeEEEEeCCCCEEEEEeCCCCE-EEECHHHHHhhCCChhh
Confidence 467888876 45689999999996 68999999999976655
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=96.55 E-value=0.0017 Score=45.54 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=30.7
Q ss_pred eeeeEEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171 58 VGIMSAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT 98 (120)
Q Consensus 58 i~~~~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~ 98 (120)
+.|+.+.+. .+..|.|.|+||+. ..|++.|||.+|..+.+
T Consensus 9 ~~p~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~Cpcaec 49 (132)
T 2l6n_A 9 PKVTGLKLKRKSRQLEISFDNGQQ-FTLSCELLRVYSPSAEV 49 (132)
T ss_dssp CCEEEEEEEGGGTEEEEEETTSCE-EEEEHHHHHHSCSCSSS
T ss_pred CCCeeEEEecCCCEEEEEECCCCE-EEeCHHHHHhcCCCccc
Confidence 446666665 33489999999996 68999999999966544
No 7
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=95.93 E-value=0.0042 Score=42.98 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=24.8
Q ss_pred CCceEEEEeCCCC-EEeechHHHhhcCCCCc
Q 048171 11 RLFQVEIEFANGS-KFTLSAEYLRIHSPAAD 40 (120)
Q Consensus 11 ~~~~L~V~W~DG~-~~~~~~~wLRdnCpCa~ 40 (120)
.+..|.|.|+||+ ++.|++.|||++|....
T Consensus 66 G~yaL~I~wsDGH~sgiY~~~~L~~l~~~~~ 96 (124)
T 2l6p_A 66 GQYALKLSFDDGHDSGLFTWDYLYELATRKD 96 (124)
T ss_dssp SSSCEEEEETTSCCCCCCTTHHHHHHHTTHH
T ss_pred CCceEEEEECCCCcceEECHHHHHHhhhhHH
Confidence 3457999999998 67999999999975543
No 8
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=95.89 E-value=0.006 Score=48.97 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=28.3
Q ss_pred eEEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171 61 MSAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT 98 (120)
Q Consensus 61 ~~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~ 98 (120)
.++++. ++..|.|.|+||+. +.|++-|||.+|..+.+
T Consensus 7 ~~~~~~~~~~~l~v~w~dG~~-~~~~~~wLRd~C~c~~c 44 (388)
T 3o2g_A 7 QKAEALDGAHLMQILWYDEEE-SLYPAVWLRDNCPCSDC 44 (388)
T ss_dssp EEEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCSTTT
T ss_pred eeeeecCCCCEEEEEECCCCe-eeeCHHHHHhcCCCccc
Confidence 345544 44589999999996 68999999999855443
No 9
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=83.94 E-value=0.64 Score=33.67 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=26.6
Q ss_pred ceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171 57 HVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF 89 (120)
Q Consensus 57 di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL 89 (120)
-.++++|++.++|.|.|+|+||-. ++|+..=|
T Consensus 8 ~p~V~~V~~l~~Y~L~v~F~dGe~-~~~Dl~pl 39 (170)
T 2auw_A 8 FPKLTAVEALAPYRLRTTWSTGEV-LEVDVGDI 39 (170)
T ss_dssp CCCEEEEEECSTTEEEEEETTSCE-EEEECHHH
T ss_pred CcceEEEEECCCeEEEEEEeCCCE-EEEEhHHh
Confidence 357899999989999999999995 79986533
No 10
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=68.76 E-value=14 Score=25.11 Aligned_cols=73 Identities=18% Similarity=0.042 Sum_probs=41.2
Q ss_pred eeeeecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEec---CeeEEEEeCCCC
Q 048171 5 LCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVG---NYGVRIVFDDLH 79 (120)
Q Consensus 5 ~~~~~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g---~yal~I~WsDGH 79 (120)
............|.|+||.-+.=-+--==-+|.|..| +++.-++.+. .-+-.+ -.+...| ..-.+|.|.||.
T Consensus 25 ~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~dc~~~-GpP~~G~~V~V~W~DG~~--y~a~f~g~~~~~~Y~V~feDgs 101 (118)
T 2qqr_A 25 EVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQF-GPPAEGEVVQVRWTDGQV--YGAKFVASHPIQMYQVEFEDGS 101 (118)
T ss_dssp EEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHH-CCCCTTCEEEEECTTSCE--EEEEEEEEEEEEEEEEEETTSC
T ss_pred EEEEEeeEEEEEEEcCCCCccCCCCHhhccccccccc-CCCCCCCEEEEEcCCCCE--eeeEEeceeEEEEEEEEECCCC
Confidence 4445556677899999998765222222357778777 4565666544 222222 1222222 134688899987
Q ss_pred c
Q 048171 80 K 80 (120)
Q Consensus 80 ~ 80 (120)
.
T Consensus 102 ~ 102 (118)
T 2qqr_A 102 Q 102 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 11
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=58.24 E-value=24 Score=24.12 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=39.8
Q ss_pred eeeeecCCceEEEEeCCCCEEe-echHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEec---CeeEEEEeCCC
Q 048171 5 LCLLLYRLFQVEIEFANGSKFT-LSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVG---NYGVRIVFDDL 78 (120)
Q Consensus 5 ~~~~~~~~~~L~V~W~DG~~~~-~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g---~yal~I~WsDG 78 (120)
............|.|+||..+. .+...+ -+|.|..| +++.-++.+. ..+-.+-- +...| ..-.+|.|.||
T Consensus 26 ~V~~~~~~~~y~V~F~DgS~s~dl~PedI-vs~dc~~~-GpP~~G~~V~V~W~DG~~y~--a~f~g~~~~~~YtV~FeDg 101 (123)
T 2xdp_A 26 RVMAVTSQTFYEVMFDDGSFSRDTFPEDI-VSRDCLKL-GPPAEGEVVQVKWPDGKLYG--AKYFGSNIAHMYQVEFEDG 101 (123)
T ss_dssp EEEEEEEEEEEEEEETTSCEEEEECGGGB-CSSCHHHH-CCCCTTCEEEEECTTSCEEE--EEEEEEEEEEEEEEECTTS
T ss_pred EEEEEeeEEEEEEEcCCCCccCCCCHhHc-cccccccc-CCCCCCCEEEEEcCCCCEEe--EEEeeeeeEEEEEEEECCC
Confidence 3444555677899999998764 222332 67778776 4555555543 22222211 11112 12467888888
Q ss_pred C
Q 048171 79 H 79 (120)
Q Consensus 79 H 79 (120)
.
T Consensus 102 s 102 (123)
T 2xdp_A 102 S 102 (123)
T ss_dssp C
T ss_pred C
Confidence 6
No 12
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=39.04 E-value=26 Score=21.36 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCceEEEEeCCCCEEeechHHHhhcCC
Q 048171 11 RLFQVEIEFANGSKFTLSAEYLRIHSP 37 (120)
Q Consensus 11 ~~~~L~V~W~DG~~~~~~~~wLRdnCp 37 (120)
.+-.+.|+|.+|....+|..-....||
T Consensus 25 g~L~flikwk~~~~~~Vpa~~a~~kcP 51 (68)
T 1e0b_A 25 GTLEIYLTWKNGAISHHPSTITNKKCP 51 (68)
T ss_dssp SCEEEEEEETTSCEEEEEHHHHHHHSH
T ss_pred CEEEEEEEECCCCccceEHHHhHhhCC
Confidence 345688999999988899988888875
No 13
>3k8r_A Uncharacterized protein; unknown function, structural genomics, joint center for STRU genomics, JCSG; 2.75A {Rhodospirillum rubrum atcc 11170}
Probab=37.26 E-value=29 Score=23.55 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.7
Q ss_pred CceEEEEeCCCCEEeechHHHh
Q 048171 12 LFQVEIEFANGSKFTLSAEYLR 33 (120)
Q Consensus 12 ~~~L~V~W~DG~~~~~~~~wLR 33 (120)
++.|.|.+.||.+..+|+.|..
T Consensus 36 ~~~l~v~L~dGr~l~~Pl~~~p 57 (124)
T 3k8r_A 36 SARVIVDLENGCTFAFPPRLAQ 57 (124)
T ss_dssp TTEEEEEETTSCEEEECGGGST
T ss_pred CCEEEEEECCCCEEEecHHHhH
Confidence 5899999999999999998764
No 14
>2x8n_A CV0863; non-uniform sampling, multidimensional decomposition, abacus, fragment monte carlo, structural genomics; NMR {Chromobacterium violaceum atcc 12472}
Probab=35.74 E-value=42 Score=22.24 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCceEEEEeCCCCEEeechHHHh
Q 048171 11 RLFQVEIEFANGSKFTLSAEYLR 33 (120)
Q Consensus 11 ~~~~L~V~W~DG~~~~~~~~wLR 33 (120)
+++.|.|...||.+..+|+.|..
T Consensus 35 ~~~~l~v~L~dGr~l~~Pl~~~p 57 (111)
T 2x8n_A 35 EEGVIVFILANDRELKFRPDDLQ 57 (111)
T ss_dssp TTTEEEEEETTCCEEEECTTTSS
T ss_pred cCCEEEEEECCCCEEEeeHHHHH
Confidence 78899999999999999987643
No 15
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=34.35 E-value=24 Score=19.48 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.5
Q ss_pred CceecCCHHHHHhhccCchHHHHHHHHHHHHcCCCCCCCC
Q 048171 79 HKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118 (120)
Q Consensus 79 H~sgiy~~~wLr~~~~~~~~~W~~y~~~~~~~~~~~~~~~ 118 (120)
|+-|+|+-++=+-+ ....=..||.-|...+-+|++|.
T Consensus 1 HsdGtFTsdyS~~l---~~~aak~fv~wL~~~k~r~~~pp 37 (39)
T 1jrj_A 1 HGEGTFTSDLSKQM---EEEAVRLFIEWLKNGGPSSGAPP 37 (39)
T ss_dssp CCCCTTHHHHHHHH---HHHHHHHHHHHHHTTGGGSSSCC
T ss_pred CCCccchHHHHHHH---HHHHHHHHHHHHHcCCCCCCCCC
Confidence 55567776654432 22334789999998777888875
No 16
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=31.84 E-value=11 Score=30.18 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHcCCCC
Q 048171 96 KFTLMRNYIKTLKKHGLSR 114 (120)
Q Consensus 96 ~~~~W~~y~~~~~~~~~~~ 114 (120)
...-|.+|+++|++.|++|
T Consensus 503 ~~~~wd~y~~~l~~~g~~~ 521 (535)
T 3omb_A 503 IDEEWDAYCKQLDSIGLQE 521 (535)
T ss_dssp HHHHHHHHHHHHHHTTHHH
T ss_pred cHHHHHHHHHHHHHCCcHH
Confidence 5566999999999999764
No 17
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=28.08 E-value=29 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=13.5
Q ss_pred cCeeEEEEe-CCCCceecCC
Q 048171 67 GNYGVRIVF-DDLHKTGIYS 85 (120)
Q Consensus 67 g~yal~I~W-sDGH~sgiy~ 85 (120)
|+--..|.| +|||.+-+||
T Consensus 36 G~PPY~VRw~ddGHe~lv~P 55 (83)
T 2a7y_A 36 GSPPYVVRWLVNGHETTVYP 55 (83)
T ss_dssp SCSCEEEEETTTTEEEEECC
T ss_pred CCCCEEEEecCCCcEEEEec
Confidence 433477899 7899876676
No 18
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=27.00 E-value=23 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.6
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcCCC
Q 048171 86 WDYFYYLGSNKFTLMRNYIKTLKKHGLS 113 (120)
Q Consensus 86 ~~wLr~~~~~~~~~W~~y~~~~~~~~~~ 113 (120)
-+|-+.|+ ..|++.++.|+++|+.
T Consensus 16 ~eY~~~H~----~vWPEv~~~L~~aGi~ 39 (104)
T 1x8d_A 16 EEYQRRHN----PIWPELEAVLKSHGAH 39 (104)
T ss_dssp HHHHHTTT----TCCHHHHHHHHHTTEE
T ss_pred HHHHHHHH----hcCHHHHHHHHHcCCe
Confidence 46677673 7899999999999974
No 19
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=26.67 E-value=84 Score=18.68 Aligned_cols=22 Identities=14% Similarity=0.079 Sum_probs=12.7
Q ss_pred cCCceEEEEeCCCCEEeechHH
Q 048171 10 YRLFQVEIEFANGSKFTLSAEY 31 (120)
Q Consensus 10 ~~~~~L~V~W~DG~~~~~~~~w 31 (120)
...+.-.|.|.||.++-..+..
T Consensus 29 ~~~~~clV~F~D~s~~W~~~kd 50 (58)
T 4hcz_A 29 SAREVCLVQFEDDSQFLVLWKD 50 (58)
T ss_dssp TTTTEEEEEETTSCEEEEEGGG
T ss_pred cCCCEEEEEEcCCCeEEEEhHH
Confidence 3334666777777666555433
No 20
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=26.52 E-value=29 Score=18.29 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 048171 99 LMRNYIKTLKKHGLSRDP 116 (120)
Q Consensus 99 ~W~~y~~~~~~~~~~~~~ 116 (120)
+-.+.|..|-.||+|++.
T Consensus 8 LQ~eLL~aLL~SGlsKe~ 25 (32)
T 1g2y_A 8 LQTEMLAALLESGLSKEA 25 (32)
T ss_dssp HHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCcHHH
Confidence 356788899999999864
No 21
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.35 E-value=43 Score=24.45 Aligned_cols=61 Identities=20% Similarity=0.090 Sum_probs=40.8
Q ss_pred eeeeEEEEe--cCeeEEEEeCCCCc--eecCCHHHHHhhccCchHHHHHHHHHHHHcCCCCCCCC
Q 048171 58 VGIMSAEPV--GNYGVRIVFDDLHK--TGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118 (120)
Q Consensus 58 i~~~~v~~~--g~yal~I~WsDGH~--sgiy~~~wLr~~~~~~~~~W~~y~~~~~~~~~~~~~~~ 118 (120)
+-.-.+... .+.++.|+..||++ +|.-+-+-+-+.|++-.--=..|+++|++|=.+.+-|.
T Consensus 46 ~yfLqvsW~~~lgsGF~i~LTDGqSaW~G~VS~~~Is~eAd~m~Me~e~YV~eL~KALv~~~~~~ 110 (186)
T 3q4f_C 46 THFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPA 110 (186)
T ss_dssp EEEEEEEESSCGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHSSCCCSS
T ss_pred cEEEEEEeccCCCcceEEEEeCCcceeeeEECHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Confidence 344444443 12478888889986 56677777777764433334679999999977776554
No 22
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.27 E-value=73 Score=23.10 Aligned_cols=60 Identities=20% Similarity=0.106 Sum_probs=42.6
Q ss_pred ccceeeeEEEEe---cCeeEEEEeCCCCc--eecCCHHHHHhhccCchHHHHHHHHHHHHcCCCCC
Q 048171 55 RRHVGIMSAEPV---GNYGVRIVFDDLHK--TGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRD 115 (120)
Q Consensus 55 ~~di~~~~v~~~---g~yal~I~WsDGH~--sgiy~~~wLr~~~~~~~~~W~~y~~~~~~~~~~~~ 115 (120)
|.-+-...+... | .++.|.-.||++ +|..+-+.+.+.+.+-...=..|++.|++|=.+-+
T Consensus 34 p~~~yflk~~W~~~l~-sgF~L~LTDG~sAW~G~vSe~~I~~~A~~~~m~~e~Yv~eL~kAl~~~~ 98 (184)
T 3w03_C 34 PSITHFLQVSWEKTLE-SGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 98 (184)
T ss_dssp TTSCEEEEEEESSCGG-GEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHSSCC
T ss_pred CCceEEEEEEeccCCC-CceEEEEECCCceeeEEcCHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Confidence 444566666663 4 378888899986 67788888888775555555789999988754433
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.20 E-value=54 Score=19.03 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=27.1
Q ss_pred eeeeecCCceEEEEeCCCCEEeec--hHHHhhcCCCCcceecCCCCe
Q 048171 5 LCLLLYRLFQVEIEFANGSKFTLS--AEYLRIHSPAADGKIRSVGGE 49 (120)
Q Consensus 5 ~~~~~~~~~~L~V~W~DG~~~~~~--~~wLRdnCpCa~C~~~~~~~~ 49 (120)
||+.........+..+=|+.+-.. ..||+.+-.||.|+. ....+
T Consensus 20 IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~-~~~~~ 65 (78)
T 2ect_A 20 VCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRK-SLTGQ 65 (78)
T ss_dssp TTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCC-CCCCS
T ss_pred eCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCC-ccCCc
Confidence 555554444333445667766554 368888889999983 43433
No 24
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.47 E-value=56 Score=23.62 Aligned_cols=61 Identities=20% Similarity=0.090 Sum_probs=39.7
Q ss_pred eeeeEEEEe--cCeeEEEEeCCCCc--eecCCHHHHHhhccCchHHHHHHHHHHHHcCCCCCCCC
Q 048171 58 VGIMSAEPV--GNYGVRIVFDDLHK--TGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118 (120)
Q Consensus 58 i~~~~v~~~--g~yal~I~WsDGH~--sgiy~~~wLr~~~~~~~~~W~~y~~~~~~~~~~~~~~~ 118 (120)
+-.-.+... .+.++.|+..|||+ +|.-+-+-.-+.+.+-.--=..|+++|++|=.+..-|.
T Consensus 20 ~yfL~v~w~~~l~~gf~i~ltDG~saW~g~Vs~~~i~~eA~~~~me~e~Yv~el~kAl~~~~~~~ 84 (175)
T 3mud_A 20 THFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPA 84 (175)
T ss_dssp EEEEEEEESSCGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCTT
T ss_pred eEEEEEeccccCCcceEEEEeCCcceeeeeeCHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Confidence 444445543 23478899999996 56667777766663333334679999999876665544
No 25
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.04 E-value=1.2e+02 Score=17.32 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=25.0
Q ss_pred eeeeecCCceEEEEeCCCCEEeec--hHHHhhcCCCCccee
Q 048171 5 LCLLLYRLFQVEIEFANGSKFTLS--AEYLRIHSPAADGKI 43 (120)
Q Consensus 5 ~~~~~~~~~~L~V~W~DG~~~~~~--~~wLRdnCpCa~C~~ 43 (120)
||+.........+..+=|+.+-.. ..||+.+-.||.|+.
T Consensus 28 IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~ 68 (75)
T 1x4j_A 28 VCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68 (75)
T ss_dssp TTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCC
T ss_pred ECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCC
Confidence 555555444444445666654444 369999999999983
No 26
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=20.90 E-value=28 Score=28.55 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=14.8
Q ss_pred EEeCCCCEEee----chHHHhhcC
Q 048171 17 IEFANGSKFTL----SAEYLRIHS 36 (120)
Q Consensus 17 V~W~DG~~~~~----~~~wLRdnC 36 (120)
|+|.++.++.+ |+.||||..
T Consensus 44 v~~~~~~tFviTGDI~AmWLRDS~ 67 (427)
T 3qt9_A 44 VEVSEGDAFVITGDIPAMWLRDST 67 (427)
T ss_dssp EEEETTEEEECCBSSCSEEHHHHH
T ss_pred eEeCCCCEEEEeCCCcchhhccCH
Confidence 56667766654 899999974
No 27
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=20.64 E-value=77 Score=23.13 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.6
Q ss_pred eeEEEEeCCCCceecCC--HHHHHhhc-------cCc----hH--HHHHHHHHHHHcCCC
Q 048171 69 YGVRIVFDDLHKTGIYS--WDYFYYLG-------SNK----FT--LMRNYIKTLKKHGLS 113 (120)
Q Consensus 69 yal~I~WsDGH~sgiy~--~~wLr~~~-------~~~----~~--~W~~y~~~~~~~~~~ 113 (120)
..|.|+|+||-. ..++ ++-|+++. ... -. .|++.+.++.++||.
T Consensus 42 k~V~LTFDDGp~-~~~~~il~iL~~~~vkATFFv~g~~~g~~~~~~~p~~lr~i~~~Ghe 100 (254)
T 2iw0_A 42 GLVALTYDDGPF-TFTPQLLDILKQNDVRATFFVNGNNWANIEAGSNPDTIRRMRADGHL 100 (254)
T ss_dssp SEEEEEEESCSC-TTHHHHHHHHHHHTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTCE
T ss_pred CEEEEEeccCch-hhHHHHHHHHHHcCCCEEEEEECCcccccccccCHHHHHHHHHCCCE
Confidence 368899999985 2222 55666555 111 12 688999999999973
No 28
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=20.50 E-value=69 Score=22.75 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=27.3
Q ss_pred eEEEEeCCCCceecCC---HHHHHhhcc------Cch--HHHHH-HHHHHHHcCC
Q 048171 70 GVRIVFDDLHKTGIYS---WDYFYYLGS------NKF--TLMRN-YIKTLKKHGL 112 (120)
Q Consensus 70 al~I~WsDGH~sgiy~---~~wLr~~~~------~~~--~~W~~-y~~~~~~~~~ 112 (120)
.|.|+|+||-. ..|. ++-|+++.. ... ...+. .+.++.++|+
T Consensus 6 ~V~LTFDDG~~-~~~t~~il~iL~~~~v~ATfFv~g~~~~~~p~~~~~~~~~~Gh 59 (216)
T 2c71_A 6 LVALTFDDGPD-NVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGH 59 (216)
T ss_dssp EEEEEEESCCC-HHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTC
T ss_pred EEEEEEecCCC-cccHHHHHHHHHHcCCCEEEEEEChhhhhCHHHHHHHHHHCCC
Confidence 68899999985 3454 566766651 111 11244 8888888886
Done!