Query 048172
Match_columns 158
No_of_seqs 213 out of 588
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 11:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.7 0.0037 1.3E-07 44.8 6.0 56 86-152 6-61 (89)
2 1wmh_B Partitioning defective- 96.6 0.0055 1.9E-07 43.9 6.5 56 87-152 7-62 (86)
3 2kkc_A Sequestosome-1; P62, PB 95.1 0.042 1.4E-06 40.2 5.7 59 86-153 5-78 (102)
4 2ktr_A Sequestosome-1; autopha 94.4 0.084 2.9E-06 39.6 5.9 59 85-152 19-92 (117)
5 1q1o_A Cell division control p 92.4 0.32 1.1E-05 35.4 6.0 64 86-154 5-74 (98)
6 2bkf_A Zinc-finger protein NBR 89.5 1 3.6E-05 32.1 6.3 54 87-152 7-60 (87)
7 1wj6_A KIAA0049 protein, RSGI 88.8 1.1 3.7E-05 32.9 6.1 54 87-152 15-68 (101)
8 1oey_J P40-PHOX, neutrophil cy 87.6 0.93 3.2E-05 33.6 5.1 38 103-152 28-65 (107)
9 1pqs_A Cell division control p 86.5 0.74 2.5E-05 31.9 3.8 48 102-154 6-53 (77)
10 1oey_A P67-PHOX, neutrophil cy 75.1 6.9 0.00024 27.4 5.6 56 87-155 6-62 (83)
11 1e8p_A Endoglucanase, dockerin 66.2 1.8 6.1E-05 27.7 0.8 13 139-151 20-32 (46)
12 2j4m_A Endoglucanase 45A; dock 40.1 6.6 0.00023 28.7 0.2 13 139-151 21-33 (100)
13 3brc_A Conserved protein of un 36.6 8.9 0.00031 29.9 0.5 10 8-17 101-110 (156)
14 2npt_A Dual specificity mitoge 32.3 1.1E+02 0.0036 22.3 5.6 56 87-153 15-71 (106)
15 3o27_A Putative uncharacterize 28.4 29 0.001 23.6 1.9 18 135-152 42-59 (68)
16 2i1s_A Hypothetical protein; m 25.5 64 0.0022 24.6 3.7 38 87-124 9-48 (188)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.67 E-value=0.0037 Score=44.83 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=43.4
Q ss_pred cceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172 86 KMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA 152 (158)
Q Consensus 86 ~~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV 152 (158)
..=|||+-.|.-+ .+.+..--+|++|...|.++|.+.- +..+++.|.|.|||+.-+
T Consensus 6 ~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~---------~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 6 QVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN---------EQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp CEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS---------SCCEEEEECCSSSCCEEC
T ss_pred eEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC---------CCeEEEEEECCCCCcccc
Confidence 3568889999844 4444446699999999999999641 236999999999998654
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.62 E-value=0.0055 Score=43.91 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=44.0
Q ss_pred ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172 87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA 152 (158)
Q Consensus 87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV 152 (158)
.-||...+..--=-.||-..-.+|++|...|+++|.+.. ..|++.|.|.|||++-+
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~----------~~f~i~Y~D~dGDLlpI 62 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG----------LDVLLGYTDAHGDLLPL 62 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT----------CCCEEEEECTTSCEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC----------CCEEEEEECCCCCEeee
Confidence 457878877743335666677899999999999999542 36999999999999754
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.10 E-value=0.042 Score=40.21 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=42.3
Q ss_pred cceeEEEecCc----ccceeeeCCC-----------CCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEE
Q 048172 86 KMYVKVSMDGA----PFLRKIDLGM-----------HQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWM 150 (158)
Q Consensus 86 ~~~VKV~mdG~----pigRkVDL~~-----------~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~m 150 (158)
+.-||++..|. .==|++-|.. -.+|++|...++++|..- .+..|.+.|.|.|||+.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l---------~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL---------RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---------CSSCEEEEEECTTCCEE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc---------CCCcEEEEEECCCCCEE
Confidence 45688888752 2345555532 248999999999999732 12369999999999987
Q ss_pred ecc
Q 048172 151 LAG 153 (158)
Q Consensus 151 LVG 153 (158)
-+-
T Consensus 76 tiS 78 (102)
T 2kkc_A 76 AFS 78 (102)
T ss_dssp EEC
T ss_pred Eec
Confidence 553
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.42 E-value=0.084 Score=39.63 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=42.2
Q ss_pred CcceeEEEecCc----ccceeeeCC-----------CCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCE
Q 048172 85 SKMYVKVSMDGA----PFLRKIDLG-----------MHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDW 149 (158)
Q Consensus 85 ~~~~VKV~mdG~----pigRkVDL~-----------~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~ 149 (158)
.+.-||++..|. .==|++-|. .-.+|++|...+.++|..- .+..|.+.|.|.|||+
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L---------~~~~f~l~YkDEdGDl 89 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL---------RPGGFQAHYRAERGDL 89 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---------CSSCEEEEEECTTCCE
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc---------CCCcEEEEEECCCCCE
Confidence 457899998751 223555554 1359999999999999621 1236999999999998
Q ss_pred Eec
Q 048172 150 MLA 152 (158)
Q Consensus 150 mLV 152 (158)
.-+
T Consensus 90 ItI 92 (117)
T 2ktr_A 90 VAF 92 (117)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=92.38 E-value=0.32 Score=35.43 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=46.1
Q ss_pred cceeEEEecCc------ccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172 86 KMYVKVSMDGA------PFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD 154 (158)
Q Consensus 86 ~~~VKV~mdG~------pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD 154 (158)
+.-|||+-+.. .=.|.|=+..--+|++|...+.+-|.+.. .. .. .....+-|+|.|||+...++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~---~i-~~~~klkYkDEdGD~Vtl~s 74 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NN---NI-SPITKIKYQDEDGDFVVLGS 74 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SS---CC-CCCCCEEEECSSSCEEEECS
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-cc---cc-cceeEEEEEcCCCCEEEEcC
Confidence 35678887742 12366667788899999999999999641 00 00 13579999999999988775
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=89.47 E-value=1 Score=32.15 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=41.9
Q ss_pred ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172 87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA 152 (158)
Q Consensus 87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV 152 (158)
.-+||.--|...=--|.-..--++++|-..+..+|++. .++|.|.|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~------------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN------------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS------------SEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC------------ceEEEEEcCCCCEEEE
Confidence 35789999985444454444788999999999999964 4799999999997644
No 7
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=88.84 E-value=1.1 Score=32.89 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=42.9
Q ss_pred ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172 87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA 152 (158)
Q Consensus 87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV 152 (158)
.-+||..-|...=--|.-..--.+++|-..+..+|++. .++|.|.|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~------------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN------------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS------------SBCCEEECTTSCEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC------------ceEEEEecCCCCEEEE
Confidence 46799999985544565555788999999999999964 4799999999997643
No 8
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.56 E-value=0.93 Score=33.59 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=32.6
Q ss_pred eCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172 103 DLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA 152 (158)
Q Consensus 103 DL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV 152 (158)
||+..-.|.+|+.-+.+-|.-+ +-+|-|.|.|||+.-+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~------------DIaLNYrD~eGDLIri 65 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE------------DIALNYRDAEGDLVRL 65 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS------------SEEEEEECTTSCEEEC
T ss_pred ccccCCCHHHHHHHHHHHhccc------------ceeeeeecCCCCEEEE
Confidence 6788889999999999999832 5799999999999754
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=86.49 E-value=0.74 Score=31.88 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=34.7
Q ss_pred eeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172 102 IDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD 154 (158)
Q Consensus 102 VDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD 154 (158)
|=...--+|++|...+.+-|... .+ +.......+-|+|.|||+...++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~--~~---~~~~~~~~lkYkDEdGD~Vti~s 53 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT--HN---NNISPITKIKYQDEDGDFVVLGS 53 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT--TS---SCSCSTTCCEEEETTTEEEECCS
T ss_pred EEeCCCCCHHHHHHHHHHHHccc--cc---ccccceeEEEEEcCCCCEEEEcC
Confidence 33445568999999999999853 10 00124689999999999987765
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=75.06 E-value=6.9 Score=27.38 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=42.3
Q ss_pred ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEe-CCCCEEecccC
Q 048172 87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYED-KDGDWMLAGDV 155 (158)
Q Consensus 87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD-~eGD~mLVGDv 155 (158)
.=|||+-. +.-.|....=-+|.+|...|.+-+...++ .-+|-|.| ..|.|++.+|.
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~----------~~~LsYk~~~s~~~vi~~d~ 62 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLE----------HTKLSYRPRDSNELVPLSED 62 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGG----------GCCEEECCTTCSSCEECCTT
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcc----------eeEEEeeCCCCCCeeccChH
Confidence 34566666 77888888888999999999999987532 24788888 56777777764
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=66.24 E-value=1.8 Score=27.67 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=11.3
Q ss_pred EEEEEeCCCCEEe
Q 048172 139 VPIYEDKDGDWML 151 (158)
Q Consensus 139 ~ltYeD~eGD~mL 151 (158)
.|+|+|.||+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5999999999954
No 12
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=40.08 E-value=6.6 Score=28.70 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=11.3
Q ss_pred EEEEEeCCCCEEe
Q 048172 139 VPIYEDKDGDWML 151 (158)
Q Consensus 139 ~ltYeD~eGD~mL 151 (158)
.|+|+|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6999999999953
No 13
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=36.55 E-value=8.9 Score=29.95 Aligned_cols=10 Identities=50% Similarity=0.906 Sum_probs=8.4
Q ss_pred cccCCCCCCC
Q 048172 8 LRLGLPGRDG 17 (158)
Q Consensus 8 LrLGLPG~~~ 17 (158)
=|||.||+++
T Consensus 101 GRLGvPGSGS 110 (156)
T 3brc_A 101 GRLGVPGSGS 110 (156)
T ss_dssp EECSSTTSCE
T ss_pred ccccCCCCcc
Confidence 3999999874
No 14
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=32.33 E-value=1.1e+02 Score=22.32 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=38.5
Q ss_pred ceeEEEec-CcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEecc
Q 048172 87 MYVKVSMD-GAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAG 153 (158)
Q Consensus 87 ~~VKV~md-G~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVG 153 (158)
.-+.+... |-.+--.||-..+=++.+|+.++.+..--. .--..-|||.+||.+-|-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a-----------T~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA-----------TTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS-----------CCSEEEEECTTSCEEEEC
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccc-----------eeeeeeeccccCCeeEEc
Confidence 34455554 556777888777789999999998765421 123678999999998763
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=28.36 E-value=29 Score=23.62 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.2
Q ss_pred CCCcEEEEEeCCCCEEec
Q 048172 135 SSEFVPIYEDKDGDWMLA 152 (158)
Q Consensus 135 ~~~~~ltYeD~eGD~mLV 152 (158)
+.++.++++|++|+.+|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 347999999999998875
No 16
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=25.54 E-value=64 Score=24.62 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=34.7
Q ss_pred ceeEEEecCc--ccceeeeCCCCCChHHHHHHHHHHhccc
Q 048172 87 MYVKVSMDGA--PFLRKIDLGMHQGYPDLAMALEKLFGCF 124 (158)
Q Consensus 87 ~~VKV~mdG~--pigRkVDL~~~~~Y~eL~~~L~~MF~~~ 124 (158)
--+||..+|. +|=|.|.+..--+..+|-..|+..|+..
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~ 48 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWE 48 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4579999986 7999999999999999999999999965
Done!