BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048173
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SQD|A Chain A, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
pdb|3SQD|B Chain B, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
Length = 219
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
L G V TH++A KV +T+ F TA+S IV+P WL+E F +F+DE Y+L
Sbjct: 39 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILR 98
Query: 330 DDGYVLKYRSELKDAVLRAKARP 352
D + + L++++ RA P
Sbjct: 99 DAEAEVLFSFSLEESLKRAHVSP 121
>pdb|3L40|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L40|B Chain B, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L41|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains In
Complex With Phosphorylated H2a
Length = 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 271 KNLRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGRFVDESFYM 327
K L ++TS+ TH++A ++ +T F ++ + +V+ W+ VDE Y+
Sbjct: 26 KKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYL 85
Query: 328 LNDDGYVLKYRSELKDAVLRAKARPGGLLK 357
LND L+ L+ A+ RA+A+ LL+
Sbjct: 86 LNDPEKELELGCTLESALKRARAQGPSLLE 115
>pdb|3K05|A Chain A, The Crystal Structure Of Mdc1 Brct T2067d In Complex With
A Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K05|B Chain B, The Crystal Structure Of Mdc1 Brct T2067d In Complex With
A Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
Length = 200
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 263 DSKKVHLTKNLRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGR 319
D++ L G++ ++H+V ++R+T+ F AL I+S WL +S G
Sbjct: 13 DARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGF 72
Query: 320 FVDESFYMLNDDGYVLKYRSELKDAVLRAKAR 351
F+ Y++ D + L+DA+ RA+ R
Sbjct: 73 FLPPDEYVVTDPEQEKNFGFSLQDALSRARER 104
>pdb|2ADO|A Chain A, Crystal Structure Of The Brct Repeat Region From The
Mediator Of Dna Damage Checkpoint Protein 1, Mdc1
pdb|2ADO|B Chain B, Crystal Structure Of The Brct Repeat Region From The
Mediator Of Dna Damage Checkpoint Protein 1, Mdc1
Length = 196
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 263 DSKKVHLTKNLRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGR 319
D++ L G++ ++H+V ++R+T+ F AL I+S WL +S G
Sbjct: 12 DARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGF 71
Query: 320 FVDESFYMLNDDGYVLKYRSELKDAVLRAKAR 351
F+ Y++ D + L+DA+ RA+ R
Sbjct: 72 FLPPDEYVVTDPEQEKNFGFSLQDALSRARER 103
>pdb|2ETX|A Chain A, Crystal Structure Of Mdc1 Tandem Brct Domains
pdb|2ETX|B Chain B, Crystal Structure Of Mdc1 Tandem Brct Domains
Length = 209
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 263 DSKKVHLTKNLRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGR 319
D++ L G++ ++H+V ++R+T+ F AL I+S WL +S G
Sbjct: 22 DARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGF 81
Query: 320 FVDESFYMLNDDGYVLKYRSELKDAVLRAKAR 351
F+ Y++ D + L+DA+ RA+ R
Sbjct: 82 FLPPDEYVVTDPEQEKNFGFSLQDALSRARER 113
>pdb|2AZM|A Chain A, Crystal Structure Of The Mdc1 Brct Repeat In Complex With
The Histone Tail Of Gamma-H2ax
pdb|2AZM|B Chain B, Crystal Structure Of The Mdc1 Brct Repeat In Complex With
The Histone Tail Of Gamma-H2ax
Length = 207
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 263 DSKKVHLTKNLRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGR 319
D++ L G++ ++H+V ++R+T+ F AL I+S WL +S G
Sbjct: 20 DARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGF 79
Query: 320 FVDESFYMLNDDGYVLKYRSELKDAVLRAKAR 351
F+ Y++ D + L+DA+ RA+ R
Sbjct: 80 FLPPDEYVVTDPEQEKNFGFSLQDALSRARER 111
>pdb|3SHT|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|C Chain C, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHV|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
pdb|3SHV|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
Length = 206
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
T+THV++GK +TLN ++ W++S W+ S G ++ E + L+
Sbjct: 53 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELS 102
>pdb|3SZM|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|C Chain C, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|D Chain D, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|E Chain E, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|F Chain F, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|G Chain G, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|H Chain H, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3T1N|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3T1N|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3U3Z|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With An H2a.X Peptide Phosphorylated
At Ser139 And Tyr142
Length = 199
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
T+THV++GK +TLN ++ W++S W+ S G ++ E + L+
Sbjct: 46 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELS 95
>pdb|3AL2|A Chain A, Crystal Structure Of Topbp1 Brct78
Length = 235
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 253 FRITLMNIADDSKKVHLTKNLRGAVTSDGI---TSTHVVAG---KVRKTLNFFTALSWIV 306
F+++ +N + HL + L G V T TH+V G + K L A W++
Sbjct: 12 FQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVL 71
Query: 307 SPSWLKESFGEGRFVDESFY 326
S+L+ G FV E Y
Sbjct: 72 HRSYLEACRTAGHFVQEEDY 91
>pdb|3AL3|A Chain A, Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Complex
Length = 235
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 253 FRITLMNIADDSKKVHLTKNLRGAVTSDGI---TSTHVVAG---KVRKTLNFFTALSWIV 306
F+++ +N + HL + L G V T TH+V G + K L A W++
Sbjct: 12 FQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVL 71
Query: 307 SPSWLKESFGEGRFVDESFY 326
S+L+ G FV E Y
Sbjct: 72 HRSYLEACRTAGHFVQEEDY 91
>pdb|3V39|A Chain A, Bd3459, A Predatory Peptidoglycan Endopeptidase From
Bdellovibrio Bacteriovorus
Length = 418
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 156 KFRKSTEPERVVIDGCSREGAKLGGFPPSLDTVHDSGDL--ATFEKVHCSNMTVGAAQIG 213
K K T E ++ + E +GG P DTV + AT + ++ G I
Sbjct: 99 KIEKLTFDENFLLAWLAEEKPMIGGTTPKYDTVEQQASIVRATLTSSFATAISPGYYTIL 158
Query: 214 ADTGAKHCSFSQGQRREDRP-VSITSVVFVSK-EFQPNGKCFRITLM 258
A+ G + +RP + + ++ FV K EFQ N K + LM
Sbjct: 159 KTKAARI-----GVQMSNRPKIDVRTISFVKKAEFQKNEKSTTMVLM 200
>pdb|3DWL|E Chain E, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|J Chain J, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 174
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 136 FASVAEVDTEGRAGRLPLRQKFRKSTEP----ERVVIDGC 171
F S+ +V T G LPL+ KFR P + +ID C
Sbjct: 8 FLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDEC 47
>pdb|1N5O|X Chain X, Structural Consequences Of A Cancer-Causing Brca1-Brct
Missense Mutation
Length = 214
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 17 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 71
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 72 FWVTQSIKERKMLNEHDFEVRGD 94
>pdb|2ING|X Chain X, X-Ray Structure Of The Brca1 Brct Mutant M1775k
Length = 213
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 16 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 70
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 71 FWVTQSIKERKMLNEHDFEVRGD 93
>pdb|3K15|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K16|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 18 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 72
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 73 FWVTQSIKERKMLNEHDFEVRGD 95
>pdb|1JNX|X Chain X, Crystal Structure Of The Brct Repeat Region From The
Breast Cancer Associated Protein, Brca1
pdb|1T15|A Chain A, Crystal Structure Of The Brca1 Brct Domains In Complex
With The Phosphorylated Interacting Region From Bach1
Helicase
pdb|1T29|A Chain A, Crystal Structure Of The Brca1 Brct Repeats Bound To A
Phosphorylated Bach1 Peptide
pdb|1T2V|A Chain A, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|B Chain B, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|C Chain C, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|D Chain D, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|E Chain E, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1Y98|A Chain A, Structure Of The Brct Repeats Of Brca1 Bound To A Ctip
Phosphopeptide
Length = 214
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 17 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 71
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 72 FWVTQSIKERKMLNEHDFEVRGD 94
>pdb|1T2U|A Chain A, Structural Basis Of Phosphopeptide Recognition By The Brct
Domain Of Brca1: Structure Of Brca1 Missense Variant
V1809f
Length = 214
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 17 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 71
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 72 FWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3K0H|A Chain A, The Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-terminus
pdb|3K0K|A Chain A, Crystal Structure Of Brca1 Brct In Complex With A Minimal
Recognition Tetrapeptide With A Free Carboxy C-Terminus
Length = 215
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 18 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 72
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 73 FWVTQSIKERKMLNEHDFEVRGD 95
>pdb|3PXE|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|B Chain B, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|C Chain C, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|D Chain D, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
Length = 214
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 17 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 71
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 72 FWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3PXA|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: G1656d
Length = 214
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 264 SKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSPSWLKESF 315
++K H+T L +T + +THVV +TL +F ++ W+VS W+ +S
Sbjct: 24 ARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSI 78
Query: 316 GEGRFVDESFYMLNDD 331
E + ++E + + D
Sbjct: 79 KERKMLNEHDFEVRGD 94
>pdb|3PXD|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1835p
Length = 214
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 17 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 71
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 72 FWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3COJ|X Chain X, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|A Chain A, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|B Chain B, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|C Chain C, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|D Chain D, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|E Chain E, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|F Chain F, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|G Chain G, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
Length = 235
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 257 LMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSP 308
M + ++K H+T L +T + +THVV +TL +F ++ W+VS
Sbjct: 38 FMLVYKFARKHHIT--LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 92
Query: 309 SWLKESFGEGRFVDESFYMLNDD 331
W+ +S E + ++E + + D
Sbjct: 93 FWVTQSIKERKMLNEHDFEVRGD 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,026,085
Number of Sequences: 62578
Number of extensions: 400680
Number of successful extensions: 669
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 22
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)