BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048173
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN=PAXIP1 PE=2 SV=1
Length = 984
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
L G V TH++A KV +T+ F TA+S IV+P WL+E F +FVDE Y+L
Sbjct: 804 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFKCQKFVDEQNYLLR 863
Query: 330 DDGYVLKYRSELKDAVLRAKARP 352
D + + L++++ RA A P
Sbjct: 864 DAEAEVLFSFSLEESLRRAHASP 886
>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2
Length = 1069
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
L G V TH++A KV +T+ F TA+S IV+P WL+E F +F+DE Y+L
Sbjct: 889 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILR 948
Query: 330 DDGYVLKYRSELKDAVLRAKARP 352
D + + L++++ RA P
Sbjct: 949 DAEAEVLFSFSLEESLKRAHVSP 971
>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1
Length = 1256
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
L G V TH+VA KV +T+ F TA+S IV+P WL ESF +F +E Y+L
Sbjct: 1076 LGGEVADTAQKCTHLVANKVTRTVKFLTAISVAKHIVTPEWLDESFKSQKFAEEQNYILR 1135
Query: 330 DDGYVLKYRSELKDAVLRAKARP 352
D + + L++++ +A P
Sbjct: 1136 DAEAEVLFCFSLEESLKKAHVNP 1158
>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1
Length = 1056
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
L G V TH++A KV +T+ F TA+S IV+P WL+E F F+DE Y+L
Sbjct: 876 LGGEVAECTKKCTHLIASKVTRTVKFLTAISVVKHIVTPDWLEECFKRQTFIDEQNYILR 935
Query: 330 DDGYVLKYRSELKDAVLRAKARP 352
D + + L++++ RA P
Sbjct: 936 DAEAEVLFSFSLEESLKRAHVSP 958
>sp|Q10337|BRC1_SCHPO BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=brc1 PE=1 SV=1
Length = 878
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 271 KNLRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGRFVDESFYM 327
K L ++TS+ TH++A ++ +T F ++ + +V+ W+ VDE Y+
Sbjct: 684 KKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYL 743
Query: 328 LNDDGYVLKYRSELKDAVLRAKARPGGLLK 357
LND L+ L+ A+ RA+A+ LL+
Sbjct: 744 LNDPEKELELGCTLESALKRARAQGPSLLE 773
>sp|Q5PSV9|MDC1_MOUSE Mediator of DNA damage checkpoint protein 1 OS=Mus musculus GN=Mdc1
PE=1 SV=1
Length = 1707
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 243 SKEFQPNGKCFRITLMNIADDSKKVHLTKNLRGAVTSDGITSTHVVAGKVRKTLNFFTAL 302
S+ +PN + L DS+ L G++ S ++H+V ++R+T+ F AL
Sbjct: 1500 SRRTKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCAL 1559
Query: 303 S---WIVSPSWLKESFGEGRFVDESFYMLNDDGYVLKYRSELKDAVLRAKAR 351
I+S +WL +S G F+ Y++ D + L+D++ RA+ R
Sbjct: 1560 GKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARER 1611
>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes
GN=MDC1 PE=3 SV=1
Length = 2171
Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGRFVDESFYMLN 329
L G++ ++H+V ++R+T+ F AL I+S WL +S G F+ Y++
Sbjct: 1994 LGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSHKAGFFLPPDEYVVT 2053
Query: 330 DDGYVLKYRSELKDAVLRAKAR 351
D + L+DA+ RA+ R
Sbjct: 2054 DPEQEKNFGFSLQDALSRARER 2075
>sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1
PE=1 SV=3
Length = 2089
Score = 41.2 bits (95), Expect = 0.014, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGRFVDESFYMLN 329
L G++ ++H+V ++R+T+ F AL I+S WL +S G F+ Y++
Sbjct: 1912 LGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVT 1971
Query: 330 DDGYVLKYRSELKDAVLRAKAR 351
D + L+DA+ RA+ R
Sbjct: 1972 DPEQEKNFGFSLQDALSRARER 1993
>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1
PE=3 SV=1
Length = 2173
Score = 40.8 bits (94), Expect = 0.016, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGRFVDESFYMLN 329
L G++ ++H+V ++R+T+ F AL I+S WL +S G F+ Y++
Sbjct: 1996 LGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVT 2055
Query: 330 DDGYVLKYRSELKDAVLRAKAR 351
D + L+DA+ RA+ R
Sbjct: 2056 DPEQEKNFGFSLQDALSRARER 2077
>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 OS=Rattus norvegicus
GN=Mdc1 PE=2 SV=2
Length = 1279
Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 263 DSKKVHLTKNLRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGR 319
DS+ L G++ S ++H+V ++R+T+ F A+ I+S +WL +S G
Sbjct: 1095 DSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCAVGKGIPILSLNWLYQSRKAGC 1154
Query: 320 FVDESFYMLNDDGYVLKYRSELKDAVLRAKAR 351
F+ Y++ D + L+D++ RA+ R
Sbjct: 1155 FLPPDDYLVTDPEQEKNFSFSLRDSLSRARER 1186
>sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1
PE=3 SV=1
Length = 2042
Score = 40.0 bits (92), Expect = 0.030, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 273 LRGAVTSDGITSTHVVAGKVRKTLNFFTALSW---IVSPSWLKESFGEGRFVDESFYMLN 329
L G++ S ++H+V ++R+T+ F AL I+S WL +S G F+ Y++
Sbjct: 1865 LGGSLASSVAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVT 1924
Query: 330 DDGYVLKYRSELKDAVLRAKAR 351
D + L++A+ RA+ R
Sbjct: 1925 DPEQEKNFGFSLREALSRARER 1946
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 160 STEPERVVIDGCSREGAKLGGFPPSLDTVHDSGDLATFEKVHCSNMTVGAAQIGADTGAK 219
S EPE + + E A + PPS + L+ F +V S AA I T
Sbjct: 1565 SHEPESDPSEDRAAEPAHVHSMPPSASALK----LSQF-RVEESTKNPAAAHIANTT--- 1616
Query: 220 HCSFSQGQRREDRPVSITSVVFVSKEFQ--PNGKCFRITLMNIADDSKKVHLTKNLRGAV 277
C+ + +++P I+S K +G + LM + ++K H+T L +
Sbjct: 1617 RCNLREESMSKEKPEVISSTERSKKRLSMVASGLTPK-ELMLVQKFARKHHVT--LTNLI 1673
Query: 278 TSDGITSTHVVAGK-----VRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
T + +THV+ +TL +F ++ W+VS W+ +S EG+ +DE + +
Sbjct: 1674 TEE---TTHVIMKTDPEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKEGKMLDEHDFEVR 1730
Query: 330 DD 331
D
Sbjct: 1731 GD 1732
>sp|Q88AR2|ARGA_PSESM Amino-acid acetyltransferase OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=argA PE=3 SV=2
Length = 432
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD++ E+ AV+ Y+H G G L ++ R +++GI+T+F +
Sbjct: 337 IACAALYPI--ADSESGELACLAVNPEYRHGGRGDELLERIENRARALGIKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|Q4ZZU5|ARGA_PSEU2 Amino-acid acetyltransferase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=argA PE=3 SV=1
Length = 432
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD++ E+ AV+ Y+H G G L ++ R +++GI+T+F +
Sbjct: 337 IACAALYPI--ADSESGELACLAVNPEYRHGGRGDELLERIENRARALGIKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|P61919|ARGA_PSESY Amino-acid acetyltransferase OS=Pseudomonas syringae pv. syringae
GN=argA PE=3 SV=1
Length = 432
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD++ E+ AV+ Y+H G G L ++ R +++GI+T+F +
Sbjct: 337 IACAALYPI--ADSESGELACLAVNPEYRHGGRGDELLERIENRARALGIKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|Q3K4Z8|ARGA_PSEPF Amino-acid acetyltransferase OS=Pseudomonas fluorescens (strain
Pf0-1) GN=argA PE=3 SV=1
Length = 432
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 63 GKVVA-AVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWD 121
G ++A A +YQI AD+ E+ AV+ Y+H G G L ++ R ++ G++T+F
Sbjct: 334 GMIIACAALYQI--ADSDAGELACLAVNPEYRHGGRGDELLERIETRARAQGLKTLFVLT 391
Query: 122 DKESSFF 128
+ + +F
Sbjct: 392 TRTAHWF 398
>sp|C3K3V3|ARGA_PSEFS Amino-acid acetyltransferase OS=Pseudomonas fluorescens (strain
SBW25) GN=argA PE=3 SV=1
Length = 433
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 63 GKVVA-AVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWD 121
G ++A A +YQI AD+ E+ AV+ Y+H G +L +++ R ++ G++T+F
Sbjct: 335 GMIIACAALYQI--ADSDAGELACLAVNPEYRHGARGDVLLERIQTRARAQGLKTLFVLT 392
Query: 122 DKESSFF 128
+ + +F
Sbjct: 393 TRTAHWF 399
>sp|A6VDY0|ARGA_PSEA7 Amino-acid acetyltransferase OS=Pseudomonas aeruginosa (strain PA7)
GN=argA PE=3 SV=1
Length = 432
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD++ E+ AV+ Y+H G G L ++ +R + +G++T+F +
Sbjct: 337 IACAALYPI--ADSEAGELACLAVNPEYRHGGRGDELLERIEERARGLGLKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|P22567|ARGA_PSEAE Amino-acid acetyltransferase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=argA PE=1
SV=2
Length = 432
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD++ E+ AV+ Y+H G G L ++ +R + +G++T+F +
Sbjct: 337 IACAALYPI--ADSEAGELACLAVNPEYRHGGRGDELLERIEERARGLGLKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|Q02EG0|ARGA_PSEAB Amino-acid acetyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=argA PE=3 SV=1
Length = 432
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD++ E+ AV+ Y+H G G L ++ +R + +G++T+F +
Sbjct: 337 IACAALYPI--ADSEAGELACLAVNPEYRHGGRGDELLERIEERARGLGLKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|B7V594|ARGA_PSEA8 Amino-acid acetyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=argA PE=3 SV=1
Length = 432
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD++ E+ AV+ Y+H G G L ++ +R + +G++T+F +
Sbjct: 337 IACAALYPI--ADSEAGELACLAVNPEYRHGGRGDELLERIEERARGLGLKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|C1DJG1|ARGA_AZOVD Amino-acid acetyltransferase OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=argA PE=3 SV=1
Length = 432
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD+ E+ AV+ Y+H G G L ++ R +++G++T+F +
Sbjct: 337 IACAALYPI--ADSDAGELACLAVNPDYRHGGRGDELLERIEARARALGLKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|Q5IFK1|MCPH1_MACFA Microcephalin OS=Macaca fascicularis GN=MCPH1 PE=2 SV=1
Length = 842
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLND 330
T+THV++GK +TLN ++ W++S W+ S G+++ E + L++
Sbjct: 689 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLESGQWISEEPFELSN 739
>sp|B0KP70|ARGA_PSEPG Amino-acid acetyltransferase OS=Pseudomonas putida (strain GB-1)
GN=argA PE=3 SV=1
Length = 432
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 63 GKVVA-AVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWD 121
G ++A A +Y I AD++ E+ AV+ Y+H G G L ++ R + +G+ T+F
Sbjct: 334 GMIIACAALYPI--ADSEAGELACLAVNPEYRHGGRGDELLERIESRARQMGLNTLFVLT 391
Query: 122 DKESSFF 128
+ + +F
Sbjct: 392 TRTAHWF 398
>sp|P61590|MCPH1_COLGU Microcephalin OS=Colobus guereza GN=MCPH1 PE=3 SV=1
Length = 841
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLND 330
T+THV++GK +TLN ++ W++S W+ S G ++ E + L++
Sbjct: 688 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLESGHWISEESFELSN 738
>sp|P0A100|ARGA_PSEPU Amino-acid acetyltransferase OS=Pseudomonas putida GN=argA PE=3
SV=1
Length = 432
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 63 GKVVA-AVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWD 121
G ++A A +Y I AD++ E+ AV+ Y+H G G L ++ R + +G+ T+F
Sbjct: 334 GMIIACAALYPI--ADSEAGELACLAVNPEYRHGGRGDELLERIESRARQMGLSTLFVLT 391
Query: 122 DKESSFF 128
+ + +F
Sbjct: 392 TRTAHWF 398
>sp|P0A0Z9|ARGA_PSEPK Amino-acid acetyltransferase OS=Pseudomonas putida (strain KT2440)
GN=argA PE=3 SV=1
Length = 432
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 63 GKVVA-AVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWD 121
G ++A A +Y I AD++ E+ AV+ Y+H G G L ++ R + +G+ T+F
Sbjct: 334 GMIIACAALYPI--ADSEAGELACLAVNPEYRHGGRGDELLERIESRARQMGLSTLFVLT 391
Query: 122 DKESSFF 128
+ + +F
Sbjct: 392 TRTAHWF 398
>sp|Q7TT79|MCPH1_MOUSE Microcephalin OS=Mus musculus GN=Mcph1 PE=2 SV=1
Length = 822
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLND 330
T+THV+ GK +TLN ++ WI+S W+ S G ++ E + L++
Sbjct: 669 TTTHVLVGKSARTLNVLMGIARGCWILSYEWVLLSLELGHWISEEPFELSE 719
>sp|A4XP61|ARGA_PSEMY Amino-acid acetyltransferase OS=Pseudomonas mendocina (strain ymp)
GN=argA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 65 VVAAVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWDDKE 124
+ A +Y I AD+ E+ AV+ Y+H G G L ++ R ++ G++T+F +
Sbjct: 337 IACAALYPI--ADSDCGELACLAVNPDYRHGGRGDELLARIEARARAQGLKTLFVLTTRT 394
Query: 125 SSFF 128
+ +F
Sbjct: 395 AHWF 398
>sp|Q4K434|ARGA_PSEF5 Amino-acid acetyltransferase OS=Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477) GN=argA PE=3 SV=1
Length = 432
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 63 GKVVA-AVIYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLKLRKRLQSVGIRTIFCWD 121
G ++A A +YQI AD+ E+ AV+ Y+H G L ++ R ++ G++T+F
Sbjct: 334 GMIIACAALYQI--ADSDAGELACLAVNPEYRHGKRGDELLERIETRARAQGLKTLFVLT 391
Query: 122 DKESSFF 128
+ + +F
Sbjct: 392 TRTAHWF 398
>sp|P61594|MCPH1_PONPY Microcephalin OS=Pongo pygmaeus GN=MCPH1 PE=3 SV=1
Length = 839
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLND 330
T+THV++GK +TLN ++ W++S W+ S G ++ E + L++
Sbjct: 686 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELSN 736
>sp|P61592|MCPH1_HYLLA Microcephalin OS=Hylobates lar GN=MCPH1 PE=3 SV=1
Length = 840
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLND 330
T+THV++GK +TLN ++ W++S W+ S G ++ E + L++
Sbjct: 686 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELSN 736
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 283 TSTHVVA-----GKVRKTLNFFTAL---SWIVSPSWLKESFGEGRFVDESFYMLNDD 331
T THV+A G ++TL F A+ WI++ W+K ++V E Y + D
Sbjct: 766 TVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIKACMKNTKYVSEEPYEITMD 822
>sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana
GN=At4g02110 PE=1 SV=3
Length = 1329
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 284 STHVVAGKVRKTLNFFTAL---SWIVSPSWLKESFGEGRFVDESFYMLNDDG 332
+TH +A ++R+T FF A SWI+ ++ +S G+ + E Y + G
Sbjct: 1134 ATHFIAPEIRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSG 1185
>sp|Q8NEM0|MCPH1_HUMAN Microcephalin OS=Homo sapiens GN=MCPH1 PE=1 SV=3
Length = 835
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
T+THV++GK +TLN ++ W++S W+ S G ++ E + L+
Sbjct: 682 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELS 731
>sp|P61593|MCPH1_PANTR Microcephalin OS=Pan troglodytes GN=MCPH1 PE=3 SV=1
Length = 835
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
T+THV++GK +TLN ++ W++S W+ S G ++ E + L+
Sbjct: 682 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELS 731
>sp|P61591|MCPH1_GORGO Microcephalin OS=Gorilla gorilla gorilla GN=MCPH1 PE=3 SV=1
Length = 835
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 283 TSTHVVAGKVRKTLNFFTALS---WIVSPSWLKESFGEGRFVDESFYMLN 329
T+THV++GK +TLN ++ W++S W+ S G ++ E + L+
Sbjct: 682 TTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELS 731
>sp|Q5BH83|DNLI4_EMENI DNA ligase 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=lig4 PE=3 SV=1
Length = 1009
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 264 SKKVHLTKN---LRGAVTSDGITST---HVVAG---------KVRKTLNFFTALSWIVSP 308
S+++HL +N GA + + T HVV K+R+TL+ L IV
Sbjct: 916 SQRIHLAQNTAKFAGASVTTSLKDTSITHVVVDPDFTSSELPKLRRTLSTRRKLPHIVKV 975
Query: 309 SWLKESFGEGRFVDESFYM 327
+W+++S+ E +DE +M
Sbjct: 976 NWIEDSWKENTLLDEEQHM 994
>sp|Q6G553|DNAJ_BARHE Chaperone protein DnaJ OS=Bartonella henselae (strain ATCC 49882 /
Houston 1) GN=dnaJ PE=3 SV=1
Length = 381
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 163 PERVVIDGCSREGAKLGGFPPSLDTVHDSGDLATFEKVHCSNMTVGAAQIGADTGAKHCS 222
P VV D C GAK G P + T H +G + + T +T C
Sbjct: 143 PSSVVCDACEGSGAKKGSKPQTCGTCHGAGRVRAAQGFFSIERTCPVCHGRGETIKDPCP 202
Query: 223 FSQGQRREDRPVSIT 237
QG RR ++ S++
Sbjct: 203 KCQGTRRVEKNRSLS 217
>sp|Q03CK3|PCP_LACC3 Pyrrolidone-carboxylate peptidase OS=Lactobacillus casei (strain
ATCC 334) GN=pcp PE=3 SV=1
Length = 215
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 14/140 (10%)
Query: 163 PERVVI---DGCSREGAKLGGFPPSLDTVHDSGDLATFEKVHCSNMTVGAAQIGADTGAK 219
PERV I DG ++ A G+ P T+H G+ A F ++ M + G
Sbjct: 77 PERVAINLDDGRIQDNA---GYQPLNHTIHGDGENAYFTQLPIKAMAKAIREAGVPAAVS 133
Query: 220 HCS--------FSQGQRREDRPVSITSVVFVSKEFQPNGKCFRITLMNIADDSKKVHLTK 271
+ + F Q Q D+ F+ F P R ++ D + +T
Sbjct: 134 NTAGTYVCNHIFYQVQYMRDKMFPDIKAGFMHIPFLPEQVVTRPETPALSLDDDVLGITA 193
Query: 272 NLRGAVTSDGITSTHVVAGK 291
+R V+ DG + GK
Sbjct: 194 AIRAIVSRDGKGDIETIEGK 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,397,457
Number of Sequences: 539616
Number of extensions: 5429413
Number of successful extensions: 10112
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10073
Number of HSP's gapped (non-prelim): 48
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)