Query 048174
Match_columns 1303
No_of_seqs 693 out of 2693
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:03:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 5E-217 1E-221 1992.4 78.0 820 5-834 65-895 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-197 5E-202 1835.1 66.2 711 5-720 95-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 3E-189 6E-194 1743.1 62.8 673 6-678 1-674 (674)
4 cd01380 MYSc_type_V Myosin mot 100.0 3E-185 7E-190 1716.4 61.2 664 7-674 1-691 (691)
5 cd01381 MYSc_type_VII Myosin m 100.0 1E-184 2E-189 1704.4 60.3 660 7-674 1-671 (671)
6 KOG0164 Myosin class I heavy c 100.0 2E-184 3E-189 1579.6 53.6 731 3-749 5-756 (1001)
7 cd01377 MYSc_type_II Myosin mo 100.0 5E-184 1E-188 1706.1 61.3 665 5-674 4-693 (693)
8 cd01378 MYSc_type_I Myosin mot 100.0 2E-183 5E-188 1695.5 59.8 662 7-674 1-674 (674)
9 cd01383 MYSc_type_VIII Myosin 100.0 2E-182 4E-187 1682.4 60.5 654 6-674 8-677 (677)
10 cd01387 MYSc_type_XV Myosin mo 100.0 2E-182 5E-187 1685.0 60.4 660 6-674 1-677 (677)
11 KOG0161 Myosin class II heavy 100.0 6E-181 1E-185 1749.4 75.1 950 7-1001 83-1114(1930)
12 cd01385 MYSc_type_IX Myosin mo 100.0 7E-182 2E-186 1683.8 62.7 666 2-675 3-689 (692)
13 cd01382 MYSc_type_VI Myosin mo 100.0 2E-181 4E-186 1686.1 61.6 664 3-673 1-715 (717)
14 KOG0160 Myosin class V heavy c 100.0 3E-180 7E-185 1638.2 61.8 753 2-773 4-758 (862)
15 cd01379 MYSc_type_III Myosin m 100.0 7E-179 2E-183 1645.1 60.6 638 7-674 1-653 (653)
16 smart00242 MYSc Myosin. Large 100.0 5E-178 1E-182 1655.9 61.5 668 5-675 5-677 (677)
17 KOG0162 Myosin class I heavy c 100.0 6E-179 1E-183 1531.2 47.7 695 4-708 16-725 (1106)
18 cd00124 MYSc Myosin motor doma 100.0 2E-176 5E-181 1645.8 60.5 664 7-674 1-679 (679)
19 KOG0163 Myosin class VI heavy 100.0 4E-174 8E-179 1491.0 66.8 741 2-758 53-844 (1259)
20 cd01386 MYSc_type_XVIII Myosin 100.0 4E-175 9E-180 1630.0 59.2 660 8-674 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 9E-169 2E-173 1595.3 51.8 652 8-663 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 4E-116 8E-121 1099.6 28.4 810 5-824 60-1009(1062)
23 KOG0161 Myosin class II heavy 99.4 2.6E-10 5.6E-15 153.0 33.7 439 372-891 399-897 (1930)
24 cd01363 Motor_domain Myosin an 98.7 1.8E-08 3.9E-13 108.7 6.5 90 76-174 8-98 (186)
25 KOG0520 Uncharacterized conser 98.4 3.1E-07 6.7E-12 115.8 7.2 121 677-803 808-936 (975)
26 KOG0160 Myosin class V heavy c 98.4 1.5E-05 3.2E-10 101.1 20.2 86 727-821 673-758 (862)
27 COG5022 Myosin heavy chain [Cy 98.3 0.00012 2.5E-09 95.7 24.9 129 691-829 734-867 (1463)
28 KOG0520 Uncharacterized conser 98.2 2.9E-06 6.2E-11 107.4 7.9 122 703-828 811-938 (975)
29 KOG4229 Myosin VII, myosin IXB 98.2 6.8E-07 1.5E-11 115.6 1.9 210 546-763 789-1002(1062)
30 PHA02768 hypothetical protein; 97.6 1.6E-05 3.4E-10 67.2 0.4 25 1115-1139 5-29 (55)
31 KOG1029 Endocytic adaptor prot 97.5 0.023 4.9E-07 70.0 25.8 14 1261-1274 924-937 (1118)
32 KOG0971 Microtubule-associated 97.5 0.053 1.1E-06 68.0 27.9 128 860-990 325-475 (1243)
33 KOG1029 Endocytic adaptor prot 97.5 0.028 6.1E-07 69.3 25.2 10 1131-1140 731-740 (1118)
34 PRK11637 AmiB activator; Provi 97.4 0.015 3.2E-07 71.3 22.9 26 971-996 227-252 (428)
35 KOG1853 LIS1-interacting prote 97.3 0.015 3.2E-07 63.1 17.8 22 980-1001 160-181 (333)
36 PF09726 Macoilin: Transmembra 97.2 0.027 5.9E-07 72.1 22.5 39 926-964 543-581 (697)
37 KOG0163 Myosin class VI heavy 97.2 0.27 5.8E-06 60.9 28.9 58 733-804 779-836 (1259)
38 KOG0164 Myosin class I heavy c 97.2 0.00094 2E-08 81.2 8.3 61 727-803 696-756 (1001)
39 KOG2462 C2H2-type Zn-finger pr 97.2 0.00016 3.5E-09 79.8 1.7 29 1114-1142 214-242 (279)
40 TIGR02169 SMC_prok_A chromosom 97.1 0.25 5.3E-06 68.2 32.9 44 958-1001 450-493 (1164)
41 KOG0250 DNA repair protein RAD 97.1 0.35 7.6E-06 63.0 31.0 83 930-1012 389-471 (1074)
42 KOG0971 Microtubule-associated 97.1 0.66 1.4E-05 58.8 32.0 83 926-1009 460-549 (1243)
43 PF07888 CALCOCO1: Calcium bin 97.1 1.2 2.6E-05 55.1 33.8 74 928-1001 371-455 (546)
44 PF07888 CALCOCO1: Calcium bin 97.1 0.021 4.6E-07 69.9 19.0 13 604-616 41-53 (546)
45 KOG0996 Structural maintenance 97.0 0.58 1.2E-05 61.2 31.3 22 859-880 439-460 (1293)
46 TIGR02169 SMC_prok_A chromosom 97.0 0.64 1.4E-05 64.2 34.3 66 936-1001 421-486 (1164)
47 PF00096 zf-C2H2: Zinc finger, 96.9 0.0002 4.3E-09 50.0 -0.0 23 1116-1138 1-23 (23)
48 KOG2462 C2H2-type Zn-finger pr 96.9 0.00026 5.7E-09 78.2 0.8 28 1115-1142 187-214 (279)
49 PF13912 zf-C2H2_6: C2H2-type 96.9 0.00022 4.8E-09 51.8 0.1 26 1115-1140 1-26 (27)
50 PF00261 Tropomyosin: Tropomyo 96.9 0.15 3.2E-06 57.4 22.7 37 863-899 88-124 (237)
51 KOG1074 Transcriptional repres 96.9 0.0025 5.5E-08 79.2 8.9 47 1085-1141 350-407 (958)
52 PF00261 Tropomyosin: Tropomyo 96.9 0.017 3.6E-07 65.0 14.7 39 929-967 121-159 (237)
53 KOG0250 DNA repair protein RAD 96.9 0.21 4.7E-06 64.9 25.6 8 581-588 125-132 (1074)
54 PRK11637 AmiB activator; Provi 96.9 0.19 4.2E-06 61.5 24.9 67 935-1001 184-250 (428)
55 KOG3623 Homeobox transcription 96.8 0.00075 1.6E-08 82.1 3.4 46 1084-1139 277-333 (1007)
56 PF12718 Tropomyosin_1: Tropom 96.8 0.087 1.9E-06 54.5 17.9 61 941-1001 79-139 (143)
57 PHA00616 hypothetical protein 96.8 0.00028 6.2E-09 56.9 -0.4 27 1115-1141 1-27 (44)
58 KOG0933 Structural maintenance 96.8 0.68 1.5E-05 59.7 28.2 75 927-1001 814-888 (1174)
59 KOG3623 Homeobox transcription 96.7 0.00042 9E-09 84.2 0.6 75 1058-1142 857-949 (1007)
60 TIGR02168 SMC_prok_B chromosom 96.7 0.23 5E-06 68.4 27.1 7 643-649 126-132 (1179)
61 PRK04863 mukB cell division pr 96.7 1.9 4.2E-05 60.1 34.3 24 1116-1139 614-637 (1486)
62 PF12718 Tropomyosin_1: Tropom 96.6 0.15 3.3E-06 52.8 18.4 63 932-994 77-139 (143)
63 PHA02562 46 endonuclease subun 96.6 0.34 7.3E-06 61.5 25.2 19 927-945 305-323 (562)
64 PF09726 Macoilin: Transmembra 96.6 0.92 2E-05 58.5 28.6 66 936-1001 588-653 (697)
65 KOG1074 Transcriptional repres 96.6 0.00099 2.1E-08 82.6 2.1 51 1081-1141 598-659 (958)
66 TIGR02168 SMC_prok_B chromosom 96.5 1.5 3.3E-05 60.5 33.1 24 976-999 439-462 (1179)
67 KOG0996 Structural maintenance 96.5 2.3 4.9E-05 56.1 30.7 12 1129-1140 722-733 (1293)
68 PF00612 IQ: IQ calmodulin-bin 96.5 0.0032 7E-08 43.0 3.4 20 782-801 2-21 (21)
69 PRK02224 chromosome segregatio 96.5 0.5 1.1E-05 63.4 26.8 24 978-1001 406-429 (880)
70 PF00612 IQ: IQ calmodulin-bin 96.5 0.0026 5.7E-08 43.5 2.7 20 728-747 2-21 (21)
71 KOG0994 Extracellular matrix g 96.5 2.7 5.9E-05 54.8 30.4 38 968-1005 1708-1745(1758)
72 KOG0925 mRNA splicing factor A 96.4 0.0026 5.7E-08 75.0 4.3 59 44-111 22-80 (699)
73 PRK04863 mukB cell division pr 96.4 4.7 0.0001 56.5 35.6 42 926-967 440-481 (1486)
74 PRK09039 hypothetical protein; 96.4 0.5 1.1E-05 56.1 23.2 43 835-887 58-101 (343)
75 PF15070 GOLGA2L5: Putative go 96.3 0.52 1.1E-05 59.9 24.0 53 933-985 179-231 (617)
76 KOG0980 Actin-binding protein 96.3 0.22 4.8E-06 63.0 20.1 10 1115-1124 688-697 (980)
77 COG1196 Smc Chromosome segrega 96.3 5.5 0.00012 55.2 35.7 142 96-273 27-170 (1163)
78 PRK02224 chromosome segregatio 96.3 1.1 2.4E-05 60.2 28.6 6 660-665 133-138 (880)
79 COG1579 Zn-ribbon protein, pos 96.3 0.29 6.3E-06 54.5 19.0 47 927-973 88-134 (239)
80 COG1196 Smc Chromosome segrega 96.3 6.5 0.00014 54.5 36.2 48 954-1001 444-491 (1163)
81 KOG0933 Structural maintenance 96.2 1.2 2.6E-05 57.5 25.6 33 858-890 739-771 (1174)
82 KOG2129 Uncharacterized conser 96.1 2.1 4.5E-05 50.2 25.0 27 927-953 252-278 (552)
83 KOG4643 Uncharacterized coiled 96.1 1.7 3.7E-05 56.1 26.2 14 1250-1263 1137-1150(1195)
84 PHA02562 46 endonuclease subun 96.1 0.53 1.1E-05 59.8 23.0 26 927-952 298-323 (562)
85 KOG3576 Ovo and related transc 96.1 0.0032 6.9E-08 66.3 2.3 57 1082-1141 111-171 (267)
86 KOG2128 Ras GTPase-activating 96.0 0.11 2.3E-06 68.9 15.7 47 781-827 592-645 (1401)
87 COG4372 Uncharacterized protei 96.0 1 2.2E-05 52.4 21.3 66 927-992 209-281 (499)
88 KOG0976 Rho/Rac1-interacting s 95.9 0.56 1.2E-05 58.5 20.4 30 927-956 350-379 (1265)
89 PF14662 CCDC155: Coiled-coil 95.9 1.7 3.7E-05 46.6 21.6 66 929-994 124-189 (193)
90 PF13851 GAS: Growth-arrest sp 95.9 0.95 2.1E-05 49.7 20.7 83 927-1009 92-175 (201)
91 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.48 1E-05 48.4 17.3 69 928-1007 59-127 (132)
92 PF08317 Spc7: Spc7 kinetochor 95.9 1.4 3.1E-05 52.0 23.7 56 928-983 209-264 (325)
93 KOG1103 Predicted coiled-coil 95.9 4.5 9.8E-05 46.3 32.1 45 957-1001 246-290 (561)
94 PF00038 Filament: Intermediat 95.9 4.3 9.2E-05 47.6 27.6 12 835-846 80-92 (312)
95 TIGR03007 pepcterm_ChnLen poly 95.9 2.2 4.8E-05 53.4 26.6 24 975-998 353-376 (498)
96 PF09755 DUF2046: Uncharacteri 95.9 3.5 7.5E-05 47.6 25.2 30 862-891 137-166 (310)
97 PF12128 DUF3584: Protein of u 95.9 7.3 0.00016 54.2 33.6 68 926-993 467-534 (1201)
98 KOG4673 Transcription factor T 95.9 7.2 0.00016 48.6 28.9 57 928-991 704-760 (961)
99 PF13894 zf-C2H2_4: C2H2-type 95.8 0.0024 5.1E-08 44.5 0.1 23 1116-1138 1-23 (24)
100 KOG0995 Centromere-associated 95.8 5.2 0.00011 49.3 27.8 30 852-881 338-367 (581)
101 KOG1003 Actin filament-coating 95.7 1.5 3.2E-05 46.9 19.8 55 945-999 133-187 (205)
102 PF12128 DUF3584: Protein of u 95.7 6.8 0.00015 54.4 32.2 61 940-1000 474-534 (1201)
103 PF10473 CENP-F_leu_zip: Leuci 95.6 1.8 3.8E-05 44.6 19.8 31 859-889 16-46 (140)
104 PRK03918 chromosome segregatio 95.6 1.2 2.7E-05 59.6 24.3 26 939-964 304-329 (880)
105 KOG0977 Nuclear envelope prote 95.6 2.2 4.7E-05 52.9 23.8 72 926-997 146-217 (546)
106 smart00787 Spc7 Spc7 kinetocho 95.6 1.8 3.9E-05 50.7 22.3 9 613-621 9-17 (312)
107 COG4942 Membrane-bound metallo 95.5 1.8 3.8E-05 52.0 21.7 38 960-997 207-244 (420)
108 COG1579 Zn-ribbon protein, pos 95.4 3 6.5E-05 46.7 22.3 13 1112-1124 218-230 (239)
109 KOG0978 E3 ubiquitin ligase in 95.4 11 0.00024 48.2 29.5 78 927-1005 537-614 (698)
110 PF06785 UPF0242: Uncharacteri 95.4 3.9 8.5E-05 46.9 22.8 137 835-1004 73-221 (401)
111 KOG0980 Actin-binding protein 95.3 3 6.6E-05 53.4 24.1 38 859-896 437-474 (980)
112 KOG1853 LIS1-interacting prote 95.3 5 0.00011 44.3 22.6 16 1056-1071 230-245 (333)
113 KOG2991 Splicing regulator [RN 95.3 5.5 0.00012 44.1 23.0 79 926-1005 215-305 (330)
114 KOG0995 Centromere-associated 95.3 0.96 2.1E-05 55.4 19.2 40 927-966 331-370 (581)
115 PF14915 CCDC144C: CCDC144C pr 95.3 1.9 4.2E-05 49.0 20.2 78 930-1008 139-237 (305)
116 TIGR00606 rad50 rad50. This fa 95.3 1.6 3.5E-05 61.1 24.3 21 94-114 29-49 (1311)
117 PF10473 CENP-F_leu_zip: Leuci 95.3 2.8 6E-05 43.2 19.7 8 835-842 22-29 (140)
118 KOG0977 Nuclear envelope prote 95.3 2.2 4.8E-05 52.9 22.4 30 964-993 304-333 (546)
119 smart00355 ZnF_C2H2 zinc finge 95.2 0.0062 1.3E-07 43.0 0.4 25 1116-1140 1-25 (26)
120 PF10146 zf-C4H2: Zinc finger- 95.2 1.7 3.7E-05 48.6 19.5 8 1134-1141 201-208 (230)
121 KOG4643 Uncharacterized coiled 95.1 7.4 0.00016 50.7 26.6 15 378-392 31-45 (1195)
122 PF08614 ATG16: Autophagy prot 95.1 0.16 3.6E-06 55.3 11.2 66 927-992 115-180 (194)
123 PTZ00014 myosin-A; Provisional 95.0 0.049 1.1E-06 71.1 8.1 42 781-822 777-818 (821)
124 KOG0018 Structural maintenance 95.0 9.4 0.0002 50.3 27.4 35 857-891 314-348 (1141)
125 PF10481 CENP-F_N: Cenp-F N-te 95.0 0.6 1.3E-05 52.0 14.8 66 936-1001 61-126 (307)
126 PF00769 ERM: Ezrin/radixin/mo 94.9 0.58 1.3E-05 53.0 15.3 80 928-1007 54-133 (246)
127 PRK03918 chromosome segregatio 94.9 11 0.00025 50.5 30.3 30 928-957 307-336 (880)
128 KOG0982 Centrosomal protein Nu 94.9 4.1 8.9E-05 48.2 21.8 15 864-878 301-315 (502)
129 smart00015 IQ Short calmodulin 94.9 0.026 5.6E-07 40.8 2.8 21 727-747 3-23 (26)
130 PRK09039 hypothetical protein; 94.9 1.9 4E-05 51.4 20.0 23 930-952 139-161 (343)
131 PF15066 CAGE1: Cancer-associa 94.8 2.5 5.5E-05 50.5 20.0 15 342-356 51-65 (527)
132 PF08317 Spc7: Spc7 kinetochor 94.8 11 0.00023 44.7 26.0 71 928-998 216-290 (325)
133 PF14662 CCDC155: Coiled-coil 94.8 1.9 4E-05 46.3 17.4 22 859-880 35-56 (193)
134 PF13465 zf-H2C2_2: Zinc-finge 94.8 0.0066 1.4E-07 43.9 -0.4 15 1113-1127 12-26 (26)
135 PF04156 IncA: IncA protein; 94.8 1.4 2.9E-05 47.9 17.3 58 942-999 130-187 (191)
136 KOG0964 Structural maintenance 94.8 4.1 9E-05 52.7 23.0 76 933-1008 305-380 (1200)
137 PF12325 TMF_TATA_bd: TATA ele 94.8 1.5 3.2E-05 44.1 15.7 46 952-997 71-116 (120)
138 PF05667 DUF812: Protein of un 94.7 0.6 1.3E-05 59.1 15.9 17 492-510 79-95 (594)
139 KOG0994 Extracellular matrix g 94.6 16 0.00036 48.2 27.8 36 28-64 192-228 (1758)
140 COG5185 HEC1 Protein involved 94.6 2.7 5.9E-05 50.1 19.7 98 858-964 307-404 (622)
141 PF00038 Filament: Intermediat 94.6 9.7 0.00021 44.6 25.2 69 933-1001 214-286 (312)
142 PF13207 AAA_17: AAA domain; P 94.6 0.024 5.2E-07 56.3 2.9 23 95-117 1-23 (121)
143 PTZ00121 MAEBL; Provisional 94.6 24 0.00052 47.9 29.5 32 10-41 163-194 (2084)
144 PRK04778 septation ring format 94.6 2.1 4.6E-05 54.5 20.9 76 926-1001 346-428 (569)
145 PF15619 Lebercilin: Ciliary p 94.6 4.2 9E-05 44.4 20.0 69 930-998 120-192 (194)
146 KOG4673 Transcription factor T 94.6 18 0.00038 45.4 28.2 28 960-987 609-636 (961)
147 KOG0612 Rho-associated, coiled 94.5 2.8 6.1E-05 55.4 21.4 54 931-984 598-651 (1317)
148 smart00015 IQ Short calmodulin 94.5 0.035 7.6E-07 40.1 2.8 20 781-800 3-22 (26)
149 PRK04778 septation ring format 94.5 6.6 0.00014 50.1 25.0 50 835-887 287-337 (569)
150 TIGR01005 eps_transp_fam exopo 94.5 7.4 0.00016 51.4 26.4 15 782-796 168-182 (754)
151 PF05667 DUF812: Protein of un 94.5 1.1 2.4E-05 56.7 17.6 36 604-649 74-109 (594)
152 TIGR00606 rad50 rad50. This fa 94.4 20 0.00042 50.6 31.4 43 959-1001 1050-1092(1311)
153 COG4942 Membrane-bound metallo 94.3 13 0.00028 44.9 24.9 17 1052-1068 302-318 (420)
154 KOG2128 Ras GTPase-activating 94.2 1.5 3.2E-05 58.7 18.1 141 683-829 451-617 (1401)
155 PF10168 Nup88: Nuclear pore c 94.1 2.6 5.7E-05 54.8 20.4 22 564-585 421-442 (717)
156 KOG1003 Actin filament-coating 94.1 4.4 9.5E-05 43.5 18.2 131 859-1001 52-182 (205)
157 KOG0999 Microtubule-associated 94.1 3.9 8.4E-05 49.7 19.7 87 927-1014 106-223 (772)
158 PF08614 ATG16: Autophagy prot 94.1 0.62 1.3E-05 50.9 12.6 77 928-1004 102-178 (194)
159 PF07111 HCR: Alpha helical co 94.0 23 0.00051 44.9 31.7 23 982-1004 637-659 (739)
160 KOG1103 Predicted coiled-coil 94.0 15 0.00032 42.4 24.8 32 970-1001 245-276 (561)
161 KOG0612 Rho-associated, coiled 93.9 21 0.00045 47.8 27.2 12 510-521 241-252 (1317)
162 KOG0982 Centrosomal protein Nu 93.9 4.1 8.9E-05 48.2 19.1 22 859-880 249-270 (502)
163 KOG0976 Rho/Rac1-interacting s 93.9 13 0.00028 47.1 24.1 64 928-995 379-442 (1265)
164 COG3883 Uncharacterized protei 93.9 9.2 0.0002 43.4 21.4 27 858-884 71-97 (265)
165 KOG3576 Ovo and related transc 93.9 0.041 8.9E-07 58.2 2.9 73 1053-1140 115-199 (267)
166 PF15254 CCDC14: Coiled-coil d 93.8 3.2 6.9E-05 52.6 19.1 74 928-1001 487-560 (861)
167 KOG1924 RhoA GTPase effector D 93.7 1.1 2.3E-05 56.3 14.7 38 964-1001 475-512 (1102)
168 PF10481 CENP-F_N: Cenp-F N-te 93.7 2 4.3E-05 48.1 15.3 72 930-1001 62-133 (307)
169 PF12874 zf-met: Zinc-finger o 93.6 0.018 3.8E-07 40.9 -0.2 24 1116-1139 1-24 (25)
170 KOG4403 Cell surface glycoprot 93.5 15 0.00033 43.6 22.7 18 972-989 392-409 (575)
171 KOG4593 Mitotic checkpoint pro 93.5 28 0.00062 44.1 30.4 21 781-801 86-106 (716)
172 PF10174 Cast: RIM-binding pro 93.5 6.3 0.00014 51.5 21.9 8 835-842 341-348 (775)
173 PF04849 HAP1_N: HAP1 N-termin 93.5 5.2 0.00011 46.3 18.9 59 936-994 228-286 (306)
174 PRK10361 DNA recombination pro 93.4 19 0.00041 44.4 24.7 10 1000-1009 210-219 (475)
175 PF13401 AAA_22: AAA domain; P 93.3 0.054 1.2E-06 54.3 2.7 29 91-119 2-30 (131)
176 PHA02768 hypothetical protein; 93.3 0.028 6E-07 48.0 0.4 19 1114-1132 30-48 (55)
177 TIGR03017 EpsF chain length de 93.2 13 0.00028 45.9 23.8 21 976-996 341-361 (444)
178 PF10146 zf-C4H2: Zinc finger- 93.2 6.8 0.00015 43.9 19.0 37 931-967 42-78 (230)
179 PF05701 WEMBL: Weak chloropla 93.2 10 0.00022 47.8 22.9 133 863-1001 277-417 (522)
180 PF04849 HAP1_N: HAP1 N-termin 93.1 4.7 0.0001 46.6 17.9 33 925-957 164-196 (306)
181 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.1 9.3 0.0002 39.1 18.5 67 926-995 64-130 (132)
182 TIGR01843 type_I_hlyD type I s 93.1 5.8 0.00012 48.2 20.4 69 933-1001 201-270 (423)
183 smart00787 Spc7 Spc7 kinetocho 93.1 22 0.00049 41.7 25.4 12 985-996 272-283 (312)
184 KOG2008 BTK-associated SH3-dom 93.1 20 0.00042 41.0 23.1 21 1051-1071 259-279 (426)
185 PF13238 AAA_18: AAA domain; P 93.0 0.063 1.4E-06 53.4 2.6 22 96-117 1-22 (129)
186 KOG4674 Uncharacterized conser 93.0 32 0.0007 48.5 28.1 22 549-570 867-888 (1822)
187 COG2433 Uncharacterized conser 93.0 0.72 1.6E-05 56.7 11.7 35 928-962 474-508 (652)
188 TIGR02322 phosphon_PhnN phosph 92.8 0.073 1.6E-06 56.9 2.9 24 94-117 2-25 (179)
189 cd00009 AAA The AAA+ (ATPases 92.8 0.13 2.8E-06 51.5 4.5 30 89-118 15-44 (151)
190 COG5185 HEC1 Protein involved 92.8 20 0.00042 43.2 22.3 32 858-889 286-317 (622)
191 PF04156 IncA: IncA protein; 92.7 3.8 8.2E-05 44.4 16.1 11 978-988 173-183 (191)
192 PF09755 DUF2046: Uncharacteri 92.7 24 0.00052 40.9 24.1 35 967-1001 167-202 (310)
193 KOG2129 Uncharacterized conser 92.6 27 0.00059 41.4 23.9 32 928-959 246-277 (552)
194 PF04111 APG6: Autophagy prote 92.6 1.3 2.9E-05 51.9 13.2 80 928-1008 50-136 (314)
195 PF15070 GOLGA2L5: Putative go 92.6 40 0.00087 43.3 28.2 31 932-962 199-229 (617)
196 COG0444 DppD ABC-type dipeptid 92.6 0.069 1.5E-06 61.5 2.4 28 91-118 29-56 (316)
197 PF13191 AAA_16: AAA ATPase do 92.5 0.068 1.5E-06 56.9 2.2 33 88-120 19-51 (185)
198 KOG4593 Mitotic checkpoint pro 92.4 40 0.00086 42.9 26.7 21 981-1001 296-316 (716)
199 PRK10884 SH3 domain-containing 92.3 1.5 3.3E-05 48.2 12.3 73 926-1001 91-163 (206)
200 TIGR03007 pepcterm_ChnLen poly 92.3 23 0.0005 44.4 24.6 66 932-997 314-382 (498)
201 cd02019 NK Nucleoside/nucleoti 92.3 0.11 2.3E-06 46.8 2.8 22 96-117 2-23 (69)
202 COG3883 Uncharacterized protei 92.3 12 0.00025 42.6 19.3 22 859-880 79-100 (265)
203 COG4026 Uncharacterized protei 92.2 0.98 2.1E-05 48.8 10.1 74 928-1001 142-215 (290)
204 PF10174 Cast: RIM-binding pro 92.2 14 0.0003 48.5 22.4 75 927-1001 464-538 (775)
205 KOG3993 Transcription factor ( 92.1 0.17 3.6E-06 59.3 4.6 27 1114-1140 355-381 (500)
206 PF08826 DMPK_coil: DMPK coile 92.1 2 4.4E-05 37.8 10.2 59 940-998 2-60 (61)
207 TIGR03015 pepcterm_ATPase puta 92.0 0.14 3.1E-06 58.3 4.1 28 91-118 41-68 (269)
208 KOG0243 Kinesin-like protein [ 92.0 10 0.00022 50.2 20.8 10 1117-1126 820-829 (1041)
209 PRK09270 nucleoside triphospha 91.9 0.23 5.1E-06 55.5 5.6 34 89-122 29-62 (229)
210 KOG0946 ER-Golgi vesicle-tethe 91.9 10 0.00022 48.5 19.6 28 496-523 389-416 (970)
211 PF13851 GAS: Growth-arrest sp 91.8 12 0.00025 41.3 18.4 30 928-957 100-129 (201)
212 PHA00732 hypothetical protein 91.8 0.058 1.3E-06 50.0 0.5 26 1115-1140 1-27 (79)
213 PRK05480 uridine/cytidine kina 91.7 0.14 3E-06 56.3 3.5 27 91-117 4-30 (209)
214 PF00004 AAA: ATPase family as 91.6 0.11 2.4E-06 51.8 2.4 23 96-118 1-23 (132)
215 PRK06696 uridine kinase; Valid 91.6 0.21 4.6E-06 55.6 4.8 40 78-119 9-48 (223)
216 COG4477 EzrA Negative regulato 91.6 18 0.0004 44.4 20.8 67 926-992 345-411 (570)
217 TIGR00150 HI0065_YjeE ATPase, 91.5 0.26 5.7E-06 50.3 4.9 27 91-117 20-46 (133)
218 PRK00300 gmk guanylate kinase; 91.5 0.12 2.7E-06 56.3 2.8 26 92-117 4-29 (205)
219 KOG0804 Cytoplasmic Zn-finger 91.5 7.7 0.00017 46.4 17.2 15 981-995 432-446 (493)
220 PF15619 Lebercilin: Ciliary p 91.5 19 0.00042 39.3 19.4 66 936-1001 119-188 (194)
221 cd01131 PilT Pilus retraction 91.4 0.13 2.7E-06 56.3 2.7 25 95-119 3-27 (198)
222 PRK10884 SH3 domain-containing 91.4 2.7 5.9E-05 46.3 12.9 29 930-958 134-162 (206)
223 cd00820 PEPCK_HprK Phosphoenol 91.3 0.15 3.3E-06 50.1 2.8 23 92-114 14-36 (107)
224 cd02023 UMPK Uridine monophosp 91.3 0.13 2.8E-06 55.9 2.7 22 96-117 2-23 (198)
225 PF00485 PRK: Phosphoribulokin 91.2 0.13 2.8E-06 55.9 2.6 25 96-120 2-26 (194)
226 KOG0963 Transcription factor/C 91.2 34 0.00074 42.9 22.9 17 928-944 249-265 (629)
227 KOG0963 Transcription factor/C 91.2 50 0.0011 41.6 27.5 63 835-897 201-265 (629)
228 PF12171 zf-C2H2_jaz: Zinc-fin 91.2 0.046 1E-06 39.8 -0.7 24 1116-1139 2-25 (27)
229 PRK13833 conjugal transfer pro 91.2 0.21 4.6E-06 58.6 4.4 34 84-119 137-170 (323)
230 KOG1899 LAR transmembrane tyro 91.1 50 0.0011 41.3 27.1 28 864-891 171-198 (861)
231 PF05911 DUF869: Plant protein 91.1 3.7 8E-05 53.4 15.6 73 929-1001 100-174 (769)
232 PF09304 Cortex-I_coil: Cortex 91.1 14 0.0003 36.1 15.5 30 860-889 9-38 (107)
233 KOG0999 Microtubule-associated 91.1 17 0.00037 44.5 19.6 48 954-1001 168-218 (772)
234 PF09730 BicD: Microtubule-ass 91.0 5.7 0.00012 51.2 16.9 48 929-976 98-148 (717)
235 PF04111 APG6: Autophagy prote 91.0 3 6.6E-05 49.0 13.6 70 930-999 66-135 (314)
236 smart00382 AAA ATPases associa 90.9 0.14 3.1E-06 50.6 2.3 28 93-120 2-29 (148)
237 TIGR00235 udk uridine kinase. 90.9 0.18 3.9E-06 55.4 3.3 28 91-118 4-31 (207)
238 cd01129 PulE-GspE PulE/GspE Th 90.9 0.25 5.3E-06 56.6 4.5 34 84-118 72-105 (264)
239 PTZ00121 MAEBL; Provisional 90.9 81 0.0018 43.3 27.8 19 80-98 251-272 (2084)
240 PF14197 Cep57_CLD_2: Centroso 90.8 2.3 5.1E-05 38.4 9.6 66 932-997 2-67 (69)
241 PF09304 Cortex-I_coil: Cortex 90.8 15 0.00033 35.8 15.5 34 933-966 42-75 (107)
242 cd01918 HprK_C HprK/P, the bif 90.8 0.18 3.9E-06 52.5 3.0 24 93-116 14-37 (149)
243 PF01583 APS_kinase: Adenylyls 90.8 0.23 5E-06 52.2 3.8 29 93-121 2-30 (156)
244 TIGR01843 type_I_hlyD type I s 90.7 22 0.00048 43.2 21.6 66 936-1001 197-263 (423)
245 PF10186 Atg14: UV radiation r 90.7 8.9 0.00019 44.4 17.3 74 928-1001 70-143 (302)
246 COG2433 Uncharacterized conser 90.7 2.7 5.8E-05 52.0 12.9 76 926-1001 427-505 (652)
247 PHA00733 hypothetical protein 90.6 0.12 2.7E-06 52.4 1.5 55 1084-1139 69-123 (128)
248 COG0194 Gmk Guanylate kinase [ 90.6 0.16 3.5E-06 54.3 2.5 25 93-117 4-28 (191)
249 PTZ00301 uridine kinase; Provi 90.5 0.18 3.9E-06 55.7 2.8 24 95-118 5-28 (210)
250 PRK06762 hypothetical protein; 90.4 0.21 4.6E-06 52.6 3.2 25 93-117 2-26 (166)
251 PF09730 BicD: Microtubule-ass 90.4 11 0.00024 48.6 18.7 143 856-1001 275-429 (717)
252 PF13870 DUF4201: Domain of un 90.4 29 0.00062 37.3 21.4 30 971-1000 146-175 (177)
253 PRK05541 adenylylsulfate kinas 90.3 0.17 3.8E-06 53.9 2.5 29 91-119 5-33 (176)
254 PRK07261 topology modulation p 90.3 0.19 4.2E-06 53.6 2.8 23 95-117 2-24 (171)
255 PRK08233 hypothetical protein; 90.3 0.16 3.4E-06 54.1 2.2 25 94-118 4-28 (182)
256 KOG0978 E3 ubiquitin ligase in 90.3 67 0.0015 41.5 29.7 67 928-1001 552-618 (698)
257 TIGR01005 eps_transp_fam exopo 90.3 76 0.0016 42.1 28.6 24 976-999 375-398 (754)
258 KOG3608 Zn finger proteins [Ge 90.2 0.12 2.5E-06 59.1 1.0 28 1112-1139 349-377 (467)
259 PLN03188 kinesin-12 family pro 90.2 14 0.00031 49.7 19.8 36 75-110 148-183 (1320)
260 COG4372 Uncharacterized protei 90.2 45 0.00098 39.4 25.8 31 857-887 169-199 (499)
261 TIGR03420 DnaA_homol_Hda DnaA 90.2 0.4 8.7E-06 53.0 5.3 38 82-119 27-64 (226)
262 cd00227 CPT Chloramphenicol (C 90.2 0.22 4.9E-06 53.1 3.2 25 93-117 2-26 (175)
263 PF01576 Myosin_tail_1: Myosin 90.1 0.088 1.9E-06 69.7 0.0 45 954-998 206-250 (859)
264 TIGR02173 cyt_kin_arch cytidyl 90.1 0.19 4E-06 53.0 2.4 23 95-117 2-24 (171)
265 cd02020 CMPK Cytidine monophos 90.1 0.21 4.6E-06 51.0 2.8 22 96-117 2-23 (147)
266 PRK12402 replication factor C 90.0 0.39 8.4E-06 56.6 5.4 57 60-118 5-61 (337)
267 PRK06547 hypothetical protein; 90.0 0.4 8.7E-06 51.3 4.9 29 89-117 11-39 (172)
268 cd02025 PanK Pantothenate kina 90.0 0.2 4.4E-06 55.7 2.7 23 96-118 2-24 (220)
269 PF06160 EzrA: Septation ring 90.0 50 0.0011 42.2 24.2 77 926-1002 342-425 (560)
270 cd02028 UMPK_like Uridine mono 89.9 0.22 4.8E-06 53.6 2.8 24 96-119 2-25 (179)
271 PRK08118 topology modulation p 89.9 0.23 5E-06 52.8 2.9 25 94-118 2-26 (167)
272 PRK00131 aroK shikimate kinase 89.8 0.26 5.7E-06 51.9 3.3 26 92-117 3-28 (175)
273 PF09237 GAGA: GAGA factor; I 89.7 0.11 2.4E-06 43.3 0.3 29 1112-1140 21-49 (54)
274 KOG0946 ER-Golgi vesicle-tethe 89.7 15 0.00032 47.1 18.3 40 968-1008 846-885 (970)
275 PF09728 Taxilin: Myosin-like 89.7 49 0.0011 39.0 26.0 46 860-905 107-152 (309)
276 PF12325 TMF_TATA_bd: TATA ele 89.7 14 0.00031 37.1 15.1 26 864-889 20-45 (120)
277 COG5189 SFP1 Putative transcri 89.6 0.19 4.1E-06 56.6 2.1 30 1106-1135 389-418 (423)
278 PF13514 AAA_27: AAA domain 89.6 1.1E+02 0.0023 42.7 30.5 21 98-118 1-21 (1111)
279 PF03668 ATP_bind_2: P-loop AT 89.6 0.21 4.6E-06 57.0 2.5 20 94-113 2-21 (284)
280 cd01130 VirB11-like_ATPase Typ 89.5 0.22 4.8E-06 53.8 2.5 25 93-117 25-49 (186)
281 COG1340 Uncharacterized archae 89.5 46 0.001 38.5 22.8 193 810-1006 32-249 (294)
282 COG4026 Uncharacterized protei 89.5 2.3 5.1E-05 46.0 9.9 62 937-998 144-205 (290)
283 KOG4809 Rab6 GTPase-interactin 89.5 31 0.00068 42.4 20.1 53 837-889 313-367 (654)
284 KOG1937 Uncharacterized conser 89.5 53 0.0011 39.7 21.6 25 856-880 296-320 (521)
285 PRK09841 cryptic autophosphory 89.3 15 0.00032 48.5 19.4 20 835-854 272-292 (726)
286 PF09789 DUF2353: Uncharacteri 89.3 17 0.00037 42.6 17.5 70 927-996 78-159 (319)
287 PF05729 NACHT: NACHT domain 89.2 0.32 6.9E-06 50.5 3.4 27 95-121 2-28 (166)
288 PRK10078 ribose 1,5-bisphospho 89.2 0.21 4.5E-06 53.9 2.1 24 93-116 2-25 (186)
289 TIGR02977 phageshock_pspA phag 89.2 41 0.00089 37.5 20.9 76 926-1001 97-183 (219)
290 TIGR02782 TrbB_P P-type conjug 89.2 0.4 8.7E-06 55.9 4.5 33 85-119 126-158 (299)
291 PF06637 PV-1: PV-1 protein (P 89.2 54 0.0012 38.8 23.2 49 835-889 279-328 (442)
292 TIGR02680 conserved hypothetic 89.2 36 0.00079 48.0 24.0 16 781-796 246-261 (1353)
293 PF07724 AAA_2: AAA domain (Cd 89.2 0.3 6.5E-06 52.2 3.2 24 95-118 5-28 (171)
294 COG1660 Predicted P-loop-conta 89.1 0.22 4.8E-06 55.7 2.1 19 95-113 3-21 (286)
295 PLN02939 transferase, transfer 89.1 14 0.0003 49.2 18.5 50 856-905 229-281 (977)
296 KOG1899 LAR transmembrane tyro 89.0 5.8 0.00013 48.9 13.8 42 927-968 173-214 (861)
297 PRK11519 tyrosine kinase; Prov 89.0 11 0.00023 49.6 17.9 20 835-854 272-292 (719)
298 KOG4807 F-actin binding protei 89.0 55 0.0012 38.6 24.2 37 975-1011 510-546 (593)
299 PHA02544 44 clamp loader, smal 88.9 0.43 9.3E-06 55.8 4.5 53 61-117 12-67 (316)
300 TIGR01313 therm_gnt_kin carboh 88.8 0.22 4.8E-06 52.3 1.8 23 96-118 1-23 (163)
301 KOG0249 LAR-interacting protei 88.8 25 0.00054 44.5 19.0 23 1281-1303 581-604 (916)
302 cd00071 GMPK Guanosine monopho 88.8 0.23 5.1E-06 50.9 2.0 22 96-117 2-23 (137)
303 PRK08084 DNA replication initi 88.8 0.62 1.3E-05 52.4 5.5 40 80-119 32-71 (235)
304 KOG2991 Splicing regulator [RN 88.6 46 0.00099 37.2 19.7 61 929-989 237-304 (330)
305 PF05911 DUF869: Plant protein 88.6 95 0.0021 40.9 26.6 23 1052-1074 255-277 (769)
306 TIGR01420 pilT_fam pilus retra 88.6 0.28 6E-06 58.4 2.7 34 84-118 114-147 (343)
307 PRK14737 gmk guanylate kinase; 88.6 0.27 5.8E-06 53.3 2.4 25 93-117 4-28 (186)
308 PF10186 Atg14: UV radiation r 88.5 48 0.001 38.2 21.3 15 979-993 128-142 (302)
309 PF12846 AAA_10: AAA-like doma 88.5 0.33 7.2E-06 55.7 3.2 29 93-121 1-29 (304)
310 PF13245 AAA_19: Part of AAA d 88.4 0.54 1.2E-05 43.3 3.9 28 92-119 9-36 (76)
311 COG4608 AppF ABC-type oligopep 88.4 0.29 6.3E-06 55.4 2.5 32 91-122 37-68 (268)
312 PRK14961 DNA polymerase III su 88.4 0.76 1.6E-05 55.1 6.3 54 61-118 7-63 (363)
313 TIGR00554 panK_bact pantothena 88.4 0.65 1.4E-05 53.8 5.4 29 91-119 60-88 (290)
314 PRK15422 septal ring assembly 88.4 6.4 0.00014 36.2 10.4 65 925-996 8-72 (79)
315 cd02024 NRK1 Nicotinamide ribo 88.4 0.29 6.2E-06 53.1 2.4 22 96-117 2-23 (187)
316 TIGR02524 dot_icm_DotB Dot/Icm 88.3 0.31 6.6E-06 58.3 2.8 28 92-119 133-160 (358)
317 PF00910 RNA_helicase: RNA hel 88.3 0.34 7.3E-06 47.5 2.7 26 96-121 1-26 (107)
318 PRK00889 adenylylsulfate kinas 88.3 0.42 9.1E-06 50.9 3.6 28 92-119 3-30 (175)
319 PF13870 DUF4201: Domain of un 88.2 41 0.00089 36.1 19.3 75 927-1001 55-129 (177)
320 COG4172 ABC-type uncharacteriz 88.1 0.25 5.5E-06 58.2 1.9 29 93-121 36-64 (534)
321 PF13671 AAA_33: AAA domain; P 88.1 0.27 5.9E-06 50.1 1.9 23 96-118 2-24 (143)
322 PF13913 zf-C2HC_2: zinc-finge 88.1 0.18 3.8E-06 36.2 0.4 21 1116-1137 3-23 (25)
323 TIGR03263 guanyl_kin guanylate 88.1 0.26 5.6E-06 52.6 1.8 24 94-117 2-25 (180)
324 PRK14738 gmk guanylate kinase; 88.0 0.36 7.7E-06 53.2 2.9 26 91-116 11-36 (206)
325 TIGR02928 orc1/cdc6 family rep 88.0 0.49 1.1E-05 56.5 4.3 36 84-119 31-66 (365)
326 KOG4360 Uncharacterized coiled 88.0 23 0.00049 43.2 17.6 54 929-982 248-301 (596)
327 cd02027 APSK Adenosine 5'-phos 87.9 0.38 8.1E-06 50.1 2.8 24 96-119 2-25 (149)
328 PRK06217 hypothetical protein; 87.8 0.33 7.1E-06 52.2 2.4 23 95-117 3-25 (183)
329 COG1125 OpuBA ABC-type proline 87.8 0.31 6.8E-06 54.4 2.2 25 95-119 29-53 (309)
330 KOG4674 Uncharacterized conser 87.8 1.5E+02 0.0033 42.3 31.0 27 975-1001 910-936 (1822)
331 PLN03025 replication factor C 87.7 0.64 1.4E-05 54.7 5.0 56 61-118 4-59 (319)
332 TIGR02680 conserved hypothetic 87.7 98 0.0021 43.9 26.6 28 94-121 25-52 (1353)
333 PF01576 Myosin_tail_1: Myosin 87.7 0.16 3.6E-06 67.2 0.0 43 858-900 347-389 (859)
334 PF04012 PspA_IM30: PspA/IM30 87.6 51 0.0011 36.6 21.7 45 835-882 28-73 (221)
335 PRK13900 type IV secretion sys 87.6 0.52 1.1E-05 55.8 4.1 30 87-118 156-185 (332)
336 PF06705 SF-assemblin: SF-asse 87.5 57 0.0012 37.0 23.0 13 933-945 126-138 (247)
337 KOG1962 B-cell receptor-associ 87.5 2.3 5E-05 46.6 8.6 61 933-993 149-209 (216)
338 COG1102 Cmk Cytidylate kinase 87.4 0.41 9E-06 50.0 2.7 24 95-118 2-25 (179)
339 KOG0979 Structural maintenance 87.4 47 0.001 43.9 21.0 36 966-1001 321-356 (1072)
340 PF00437 T2SE: Type II/IV secr 87.4 0.36 7.7E-06 55.3 2.5 28 92-119 126-153 (270)
341 PRK12377 putative replication 87.3 0.86 1.9E-05 51.7 5.5 44 75-120 85-128 (248)
342 cd01120 RecA-like_NTPases RecA 87.3 0.45 9.7E-06 49.0 3.0 24 96-119 2-25 (165)
343 TIGR02525 plasmid_TraJ plasmid 87.3 0.39 8.4E-06 57.6 2.8 27 93-119 149-175 (372)
344 COG0572 Udk Uridine kinase [Nu 87.3 0.4 8.7E-06 52.8 2.7 23 96-118 11-33 (218)
345 PF09738 DUF2051: Double stran 87.2 25 0.00054 41.1 17.2 75 936-1014 106-180 (302)
346 PRK13851 type IV secretion sys 87.2 0.5 1.1E-05 56.1 3.6 26 93-118 162-187 (344)
347 KOG3993 Transcription factor ( 87.1 0.29 6.2E-06 57.4 1.5 28 1116-1143 296-323 (500)
348 PRK03846 adenylylsulfate kinas 87.1 0.63 1.4E-05 50.7 4.2 32 89-120 20-51 (198)
349 PF10498 IFT57: Intra-flagella 87.1 11 0.00025 45.0 14.8 18 980-997 331-348 (359)
350 PF10498 IFT57: Intra-flagella 87.1 11 0.00024 45.0 14.7 25 899-923 305-330 (359)
351 TIGR01010 BexC_CtrB_KpsE polys 87.0 26 0.00057 42.0 18.3 27 971-997 279-305 (362)
352 PRK08903 DnaA regulatory inact 87.0 0.87 1.9E-05 50.6 5.3 29 91-119 40-68 (227)
353 PF09789 DUF2353: Uncharacteri 87.0 42 0.00091 39.4 18.8 73 929-1001 134-213 (319)
354 PF14915 CCDC144C: CCDC144C pr 87.0 65 0.0014 37.2 26.1 73 926-998 219-292 (305)
355 PRK10751 molybdopterin-guanine 86.9 0.44 9.5E-06 51.0 2.7 27 94-120 7-33 (173)
356 PRK01156 chromosome segregatio 86.9 1.3E+02 0.0029 40.7 30.9 29 973-1001 412-440 (895)
357 cd00464 SK Shikimate kinase (S 86.9 0.41 9E-06 49.4 2.5 23 95-117 1-23 (154)
358 PRK10698 phage shock protein P 86.9 58 0.0012 36.5 19.9 75 927-1001 98-183 (222)
359 KOG4677 Golgi integral membran 86.9 69 0.0015 38.7 20.3 15 783-797 178-192 (554)
360 PHA00733 hypothetical protein 86.6 0.28 6.1E-06 49.8 1.0 28 1112-1139 70-97 (128)
361 PRK00440 rfc replication facto 86.5 0.79 1.7E-05 53.4 4.9 55 62-118 9-63 (319)
362 PF03266 NTPase_1: NTPase; In 86.5 0.49 1.1E-05 50.4 2.8 24 96-119 2-25 (168)
363 COG1124 DppF ABC-type dipeptid 86.4 0.49 1.1E-05 52.7 2.8 29 91-119 31-59 (252)
364 PF14992 TMCO5: TMCO5 family 86.4 28 0.00061 39.9 16.5 26 927-952 115-140 (280)
365 TIGR03017 EpsF chain length de 86.3 91 0.002 38.4 23.0 23 972-994 344-366 (444)
366 COG1382 GimC Prefoldin, chaper 86.3 14 0.00029 37.1 12.3 42 964-1005 71-112 (119)
367 COG1123 ATPase components of v 86.2 0.38 8.3E-06 59.5 2.0 30 91-120 33-62 (539)
368 PF03205 MobB: Molybdopterin g 86.2 0.56 1.2E-05 48.4 2.9 27 95-121 2-28 (140)
369 cd02021 GntK Gluconate kinase 86.2 0.45 9.9E-06 49.1 2.3 22 96-117 2-23 (150)
370 KOG0804 Cytoplasmic Zn-finger 86.2 33 0.00072 41.4 17.4 21 982-1002 426-446 (493)
371 PRK09825 idnK D-gluconate kina 86.1 0.55 1.2E-05 50.4 3.0 26 93-118 3-28 (176)
372 PRK05057 aroK shikimate kinase 86.0 0.55 1.2E-05 50.1 2.9 25 93-117 4-28 (172)
373 PRK14956 DNA polymerase III su 85.9 0.96 2.1E-05 55.7 5.2 54 62-119 10-66 (484)
374 PRK00411 cdc6 cell division co 85.9 0.76 1.7E-05 55.5 4.4 35 86-120 48-82 (394)
375 TIGR02902 spore_lonB ATP-depen 85.8 0.83 1.8E-05 57.6 4.8 34 85-118 78-111 (531)
376 TIGR01360 aden_kin_iso1 adenyl 85.8 0.55 1.2E-05 50.2 2.8 23 95-117 5-27 (188)
377 PF10205 KLRAQ: Predicted coil 85.5 18 0.00038 35.3 12.3 67 935-1001 5-71 (102)
378 PTZ00112 origin recognition co 85.5 1.6 3.4E-05 56.8 6.8 44 76-120 764-808 (1164)
379 TIGR02533 type_II_gspE general 85.4 0.72 1.6E-05 57.4 3.9 35 83-118 233-267 (486)
380 PRK04182 cytidylate kinase; Pr 85.4 0.53 1.1E-05 49.9 2.4 23 95-117 2-24 (180)
381 PF00769 ERM: Ezrin/radixin/mo 85.4 37 0.00081 38.6 17.2 66 936-1001 48-113 (246)
382 KOG4360 Uncharacterized coiled 85.3 43 0.00092 41.0 17.9 75 927-1001 225-299 (596)
383 PF10267 Tmemb_cc2: Predicted 85.3 25 0.00054 42.5 16.4 24 929-952 270-293 (395)
384 KOG2751 Beclin-like protein [S 85.3 27 0.00058 42.0 16.1 69 928-996 183-251 (447)
385 COG0563 Adk Adenylate kinase a 85.2 0.61 1.3E-05 50.2 2.8 23 95-117 2-24 (178)
386 PRK13764 ATPase; Provisional 85.2 0.64 1.4E-05 58.9 3.3 27 93-119 257-283 (602)
387 PF10168 Nup88: Nuclear pore c 85.2 53 0.0012 43.1 20.6 34 858-891 584-617 (717)
388 PRK04040 adenylate kinase; Pro 85.1 0.69 1.5E-05 50.2 3.1 25 94-118 3-27 (188)
389 COG4172 ABC-type uncharacteriz 85.1 0.59 1.3E-05 55.3 2.7 31 90-120 310-340 (534)
390 PF03215 Rad17: Rad17 cell cyc 85.0 0.77 1.7E-05 57.4 3.9 59 59-117 8-69 (519)
391 PRK06645 DNA polymerase III su 85.0 1.1 2.4E-05 55.9 5.2 56 62-120 13-70 (507)
392 COG0529 CysC Adenylylsulfate k 84.8 1.1 2.5E-05 47.5 4.4 33 89-121 19-51 (197)
393 PF10212 TTKRSYEDQ: Predicted 84.8 68 0.0015 39.9 19.8 21 544-564 165-185 (518)
394 PRK14964 DNA polymerase III su 84.8 1 2.2E-05 55.9 4.7 56 61-120 4-62 (491)
395 PF13555 AAA_29: P-loop contai 84.7 0.89 1.9E-05 40.2 3.0 23 95-117 25-47 (62)
396 PRK13342 recombination factor 84.6 1.1 2.3E-05 54.9 4.9 43 74-117 18-60 (413)
397 PRK09111 DNA polymerase III su 84.6 0.77 1.7E-05 58.4 3.7 55 62-120 16-73 (598)
398 PRK07667 uridine kinase; Provi 84.6 0.68 1.5E-05 50.4 2.8 26 94-119 18-43 (193)
399 PHA00729 NTP-binding motif con 84.6 1.2 2.7E-05 49.6 4.8 38 80-118 5-42 (226)
400 PF06005 DUF904: Protein of un 84.6 14 0.00031 33.7 10.7 35 927-961 10-44 (72)
401 PF11559 ADIP: Afadin- and alp 84.6 17 0.00037 37.9 13.2 66 928-993 59-124 (151)
402 KOG0056 Heavy metal exporter H 84.6 0.81 1.8E-05 55.0 3.6 41 92-132 563-603 (790)
403 PRK10929 putative mechanosensi 84.5 1.8E+02 0.0039 40.1 25.4 225 784-1013 25-258 (1109)
404 PRK14732 coaE dephospho-CoA ki 84.5 0.78 1.7E-05 50.2 3.2 47 96-147 2-53 (196)
405 PF06005 DUF904: Protein of un 84.5 19 0.00042 32.9 11.5 60 937-996 6-65 (72)
406 PRK14527 adenylate kinase; Pro 84.5 0.8 1.7E-05 49.6 3.3 27 91-117 4-30 (191)
407 PF06637 PV-1: PV-1 protein (P 84.4 96 0.0021 36.8 26.6 76 926-1001 290-373 (442)
408 PF07889 DUF1664: Protein of u 84.3 13 0.00029 37.7 11.4 67 931-997 57-123 (126)
409 COG2884 FtsE Predicted ATPase 84.2 0.65 1.4E-05 49.9 2.4 25 92-116 27-51 (223)
410 PF10205 KLRAQ: Predicted coil 84.2 19 0.00042 35.0 11.9 73 926-998 3-75 (102)
411 cd03293 ABC_NrtD_SsuB_transpor 84.1 0.69 1.5E-05 51.2 2.6 27 91-117 28-54 (220)
412 COG2805 PilT Tfp pilus assembl 84.0 0.75 1.6E-05 52.6 2.8 75 31-119 70-151 (353)
413 PRK15093 antimicrobial peptide 83.9 0.71 1.5E-05 54.6 2.8 27 91-117 31-57 (330)
414 TIGR02868 CydC thiol reductant 83.9 0.52 1.1E-05 59.4 1.8 28 91-118 359-386 (529)
415 PF07728 AAA_5: AAA domain (dy 83.9 0.76 1.6E-05 46.8 2.7 22 96-117 2-23 (139)
416 PRK12704 phosphodiesterase; Pr 83.8 1.3E+02 0.0029 38.0 23.4 13 1045-1057 250-262 (520)
417 PRK13894 conjugal transfer ATP 83.8 0.75 1.6E-05 54.1 2.9 27 93-119 148-174 (319)
418 cd03260 ABC_PstB_phosphate_tra 83.8 0.77 1.7E-05 51.0 2.9 27 91-117 24-50 (227)
419 PRK06761 hypothetical protein; 83.8 0.67 1.5E-05 53.4 2.4 26 94-119 4-29 (282)
420 TIGR02673 FtsE cell division A 83.7 0.75 1.6E-05 50.6 2.8 27 91-117 26-52 (214)
421 COG1123 ATPase components of v 83.7 0.55 1.2E-05 58.2 1.8 29 91-119 315-343 (539)
422 PRK11308 dppF dipeptide transp 83.7 0.73 1.6E-05 54.5 2.8 27 91-117 39-65 (327)
423 cd02029 PRK_like Phosphoribulo 83.7 0.77 1.7E-05 52.3 2.8 24 96-119 2-25 (277)
424 PF00005 ABC_tran: ABC transpo 83.7 0.64 1.4E-05 47.1 2.0 27 92-118 10-36 (137)
425 PF10226 DUF2216: Uncharacteri 83.7 27 0.00059 37.5 13.8 87 928-1015 55-145 (195)
426 PRK15177 Vi polysaccharide exp 83.7 0.77 1.7E-05 50.8 2.8 27 91-117 11-37 (213)
427 PF13514 AAA_27: AAA domain 83.7 2E+02 0.0044 40.0 30.8 32 860-891 673-704 (1111)
428 PRK06893 DNA replication initi 83.6 1.6 3.5E-05 48.8 5.4 44 75-120 23-66 (229)
429 TIGR01166 cbiO cobalt transpor 83.6 0.78 1.7E-05 49.5 2.8 26 91-116 16-41 (190)
430 PRK05416 glmZ(sRNA)-inactivati 83.6 0.69 1.5E-05 53.6 2.5 22 93-114 6-27 (288)
431 PRK05342 clpX ATP-dependent pr 83.6 1.5 3.3E-05 53.4 5.5 63 55-117 59-132 (412)
432 PF07475 Hpr_kinase_C: HPr Ser 83.6 0.76 1.6E-05 48.8 2.5 23 93-115 18-40 (171)
433 cd03115 SRP The signal recogni 83.5 0.92 2E-05 48.1 3.3 27 95-121 2-28 (173)
434 TIGR00960 3a0501s02 Type II (G 83.5 0.78 1.7E-05 50.6 2.8 27 91-117 27-53 (216)
435 PRK12704 phosphodiesterase; Pr 83.4 1.4E+02 0.003 37.9 23.0 7 1266-1272 468-474 (520)
436 TIGR03499 FlhF flagellar biosy 83.4 1 2.2E-05 52.2 3.7 45 76-120 169-221 (282)
437 PRK05896 DNA polymerase III su 83.3 1.7 3.6E-05 55.1 5.8 59 60-120 6-65 (605)
438 PF15254 CCDC14: Coiled-coil d 83.3 86 0.0019 40.5 20.1 62 930-991 496-557 (861)
439 PRK11022 dppD dipeptide transp 83.3 0.61 1.3E-05 55.1 1.9 27 91-117 31-57 (326)
440 PRK08727 hypothetical protein; 83.3 1.6 3.5E-05 49.0 5.2 31 90-120 38-68 (233)
441 PF06548 Kinesin-related: Kine 83.2 88 0.0019 38.0 19.2 63 931-993 406-471 (488)
442 PRK09473 oppD oligopeptide tra 83.2 0.74 1.6E-05 54.5 2.6 27 91-117 40-66 (330)
443 PRK15079 oligopeptide ABC tran 83.2 0.78 1.7E-05 54.3 2.8 27 91-117 45-71 (331)
444 cd03225 ABC_cobalt_CbiO_domain 83.2 0.85 1.8E-05 50.1 2.9 27 91-117 25-51 (211)
445 TIGR02338 gimC_beta prefoldin, 83.2 19 0.00042 35.5 12.1 39 966-1004 70-108 (110)
446 PRK08116 hypothetical protein; 83.1 1.9 4.2E-05 49.5 5.9 45 76-120 96-141 (268)
447 cd03259 ABC_Carb_Solutes_like 83.1 0.85 1.8E-05 50.1 2.8 27 91-117 24-50 (213)
448 PRK14974 cell division protein 83.0 1.7 3.7E-05 51.5 5.5 31 91-121 138-168 (336)
449 COG3074 Uncharacterized protei 83.0 17 0.00036 32.5 9.9 23 930-952 13-35 (79)
450 PF15066 CAGE1: Cancer-associa 83.0 1.2E+02 0.0026 36.9 24.2 8 835-842 367-374 (527)
451 PRK15453 phosphoribulokinase; 82.9 0.86 1.9E-05 52.3 2.8 25 93-117 5-29 (290)
452 PF02367 UPF0079: Uncharacteri 82.8 1.6 3.4E-05 44.1 4.4 27 91-117 13-39 (123)
453 cd03255 ABC_MJ0796_Lo1CDE_FtsE 82.8 0.87 1.9E-05 50.2 2.8 27 91-117 28-54 (218)
454 PRK14955 DNA polymerase III su 82.8 1.7 3.8E-05 52.8 5.6 56 62-119 8-64 (397)
455 TIGR02903 spore_lon_C ATP-depe 82.7 1.5 3.3E-05 56.2 5.3 36 85-120 167-202 (615)
456 PF03193 DUF258: Protein of un 82.7 1 2.2E-05 47.6 3.1 25 92-116 34-58 (161)
457 PRK12608 transcription termina 82.7 1.1 2.4E-05 53.4 3.7 43 77-119 117-159 (380)
458 KOG4403 Cell surface glycoprot 82.7 1.2E+02 0.0026 36.5 21.5 11 836-846 258-269 (575)
459 PF00625 Guanylate_kin: Guanyl 82.6 0.98 2.1E-05 48.6 3.0 26 93-118 2-27 (183)
460 TIGR00176 mobB molybdopterin-g 82.6 1 2.2E-05 47.4 3.0 25 96-120 2-26 (155)
461 TIGR00455 apsK adenylylsulfate 82.6 1.5 3.2E-05 47.2 4.4 29 91-119 16-44 (184)
462 PF01920 Prefoldin_2: Prefoldi 82.6 16 0.00035 35.3 11.4 75 927-1001 4-100 (106)
463 PRK08356 hypothetical protein; 82.5 0.76 1.7E-05 50.0 2.2 22 94-115 6-27 (195)
464 PF00308 Bac_DnaA: Bacterial d 82.5 1.9 4.1E-05 48.0 5.3 42 79-120 18-61 (219)
465 TIGR01359 UMP_CMP_kin_fam UMP- 82.5 0.88 1.9E-05 48.6 2.6 23 96-118 2-24 (183)
466 COG2274 SunT ABC-type bacterio 82.5 0.66 1.4E-05 60.1 1.9 30 90-119 496-525 (709)
467 TIGR03608 L_ocin_972_ABC putat 82.5 0.9 2E-05 49.6 2.7 27 91-117 22-48 (206)
468 TIGR02788 VirB11 P-type DNA tr 82.5 0.71 1.5E-05 54.1 2.0 25 93-117 144-168 (308)
469 PHA00732 hypothetical protein 82.4 0.73 1.6E-05 42.8 1.7 48 1088-1139 1-48 (79)
470 PF05769 DUF837: Protein of un 82.4 78 0.0017 34.3 17.6 39 925-963 67-105 (181)
471 PF05278 PEARLI-4: Arabidopsis 82.4 49 0.0011 37.8 16.2 56 941-996 206-261 (269)
472 PRK14528 adenylate kinase; Pro 82.4 1 2.2E-05 48.7 3.0 24 94-117 2-25 (186)
473 PRK04220 2-phosphoglycerate ki 82.3 1.5 3.2E-05 51.0 4.5 27 91-117 90-116 (301)
474 cd03296 ABC_CysA_sulfate_impor 82.3 0.93 2E-05 50.9 2.8 27 91-117 26-52 (239)
475 PRK00698 tmk thymidylate kinas 82.2 1.2 2.5E-05 48.5 3.4 28 93-120 3-30 (205)
476 PF05701 WEMBL: Weak chloropla 82.2 1.5E+02 0.0033 37.5 32.4 138 858-1001 300-438 (522)
477 cd03292 ABC_FtsE_transporter F 82.2 0.95 2E-05 49.7 2.8 27 91-117 25-51 (214)
478 TIGR03574 selen_PSTK L-seryl-t 82.2 0.93 2E-05 51.3 2.8 24 96-119 2-25 (249)
479 cd03229 ABC_Class3 This class 82.1 1 2.2E-05 48.3 2.9 27 91-117 24-50 (178)
480 PRK14531 adenylate kinase; Pro 82.1 1.1 2.3E-05 48.4 3.1 24 94-117 3-26 (183)
481 PRK03839 putative kinase; Prov 82.0 0.97 2.1E-05 48.3 2.7 23 95-117 2-24 (180)
482 TIGR02881 spore_V_K stage V sp 82.0 1 2.3E-05 51.3 3.1 30 92-121 41-70 (261)
483 KOG0243 Kinesin-like protein [ 82.0 83 0.0018 42.3 20.1 31 859-889 440-470 (1041)
484 cd03258 ABC_MetN_methionine_tr 82.0 0.98 2.1E-05 50.4 2.8 27 91-117 29-55 (233)
485 PF11932 DUF3450: Protein of u 81.9 19 0.00042 40.9 13.3 75 927-1001 41-115 (251)
486 COG3074 Uncharacterized protei 81.9 21 0.00046 31.9 10.1 20 929-948 19-38 (79)
487 KOG1962 B-cell receptor-associ 81.9 9.7 0.00021 41.9 10.2 52 950-1001 152-203 (216)
488 TIGR00064 ftsY signal recognit 81.9 2.3 4.9E-05 49.0 5.8 47 75-121 45-100 (272)
489 PF05557 MAD: Mitotic checkpoi 81.9 0.44 9.5E-06 62.4 0.0 33 929-961 186-218 (722)
490 PF05622 HOOK: HOOK protein; 81.8 0.44 9.6E-06 62.3 0.0 197 835-1045 244-444 (713)
491 cd03235 ABC_Metallic_Cations A 81.8 0.92 2E-05 49.9 2.5 27 91-117 23-49 (213)
492 PRK11176 lipid transporter ATP 81.8 0.84 1.8E-05 58.3 2.5 28 91-118 367-394 (582)
493 PRK13729 conjugal transfer pil 81.8 18 0.00038 44.4 13.2 50 944-993 71-120 (475)
494 PHA02530 pseT polynucleotide k 81.7 0.92 2E-05 52.7 2.6 24 94-117 3-26 (300)
495 PF04665 Pox_A32: Poxvirus A32 81.6 0.99 2.1E-05 50.8 2.7 25 95-119 15-39 (241)
496 COG1842 PspA Phage shock prote 81.6 55 0.0012 36.7 16.2 110 863-1006 27-141 (225)
497 COG0802 Predicted ATPase or ki 81.6 2.5 5.5E-05 43.9 5.4 30 90-119 22-51 (149)
498 KOG0239 Kinesin (KAR3 subfamil 81.6 65 0.0014 41.9 19.0 136 826-997 170-313 (670)
499 PRK10416 signal recognition pa 81.5 1.3 2.8E-05 52.1 3.7 33 91-123 112-144 (318)
500 cd02026 PRK Phosphoribulokinas 81.4 0.98 2.1E-05 52.0 2.6 22 96-117 2-23 (273)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.7e-217 Score=1992.36 Aligned_cols=820 Identities=45% Similarity=0.703 Sum_probs=770.6
Q ss_pred CCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHH
Q 048174 5 AGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAY 84 (1303)
Q Consensus 5 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay 84 (1303)
.++|||||.|+|||||+|||||++||..++||||+|.||||||||+.|| ||++++|+.|.+++..+++|||||||+.||
T Consensus 65 ~~~vdDLt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY 143 (1463)
T COG5022 65 FDGVDDLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAY 143 (1463)
T ss_pred ccCchhhhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEE
Q 048174 85 REMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVE 164 (1303)
Q Consensus 85 ~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~ 164 (1303)
++|...++||||||||||||||||+||+||+|||.+++.++...++||++||++||||||||||||+||||||||||||+
T Consensus 144 ~~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyik 223 (1463)
T COG5022 144 RNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIK 223 (1463)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEE
Confidence 99999999999999999999999999999999999998776667799999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeecccC-ChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHH
Q 048174 165 IQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCAA-PPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDY 243 (1303)
Q Consensus 165 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~~-~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 243 (1303)
|.||.+|.|+||+|++|||||||||+|+.+|||||||||||++ ++..++.|++..|.+|.||++++|..++|+||+++|
T Consensus 224 I~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kef 303 (1463)
T COG5022 224 IEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEF 303 (1463)
T ss_pred EEECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHH
Confidence 9999999999999999999999999999999999999999995 444556677789999999999999999999999999
Q ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q 048174 244 LATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITP 323 (1303)
Q Consensus 244 ~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 323 (1303)
..|+.||++|||+.++|.+||+|||||||||||+|..+.++++.+.+. ..++.+|.|||||+..|.+||+.|.++++
T Consensus 304 k~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~ 380 (1463)
T COG5022 304 KITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTG 380 (1463)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecccchhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcC
Confidence 999999999999999999999999999999999999988887777765 35999999999999999999999999999
Q ss_pred CceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHHhhhHHHHh
Q 048174 324 EEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQQ 403 (1303)
Q Consensus 324 ~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~ 403 (1303)
||+|.++++..||..+||||||+||++||+|||++||.+|...+...+|||||||||||+|+.|||||||||||||||||
T Consensus 381 ~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ 460 (1463)
T COG5022 381 GEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQ 460 (1463)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998776677899999999999999999999999999999999
Q ss_pred HHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhc-CCCcccccchhhhcCCCCchHHHHHHHHHHhc--CCCCccc
Q 048174 404 HFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHENFSQKLYQTFK--DHKRFIK 480 (1303)
Q Consensus 404 ~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~-~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~f~~ 480 (1303)
+||+|||++||+||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.|||++|.+||++.+. .++.|.+
T Consensus 461 ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~ 540 (1463)
T COG5022 461 FFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKK 540 (1463)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccc
Confidence 99999999999999999999999999999999999997 36699999999999999999999999999986 4678999
Q ss_pred CCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHhhHhhHHHHH
Q 048174 481 PKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSRFKLQLQQLM 560 (1303)
Q Consensus 481 p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~fk~sL~~Lm 560 (1303)
||+....|+|+||||+|+|+++||++||+|++++++++||..|+|+||..||+.... ..+.++++|+|+.||.||++||
T Consensus 541 ~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~-~~~K~~~pT~gs~~K~sl~~Lm 619 (1463)
T COG5022 541 SRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN-IESKGRFPTLGSRFKESLNSLM 619 (1463)
T ss_pred cccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh-ccccCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995433 3334689999999999999999
Q ss_pred HHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhc-----ccc
Q 048174 561 DTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRK-----QNY 635 (1303)
Q Consensus 561 ~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~-----~~~ 635 (1303)
++|++|+||||||||||..|+|+.||+.+|++|||||||||+|||+|+|||.||+|++|+.||++|.|.... +..
T Consensus 620 ~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~ 699 (1463)
T COG5022 620 STLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKE 699 (1463)
T ss_pred HHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999997432 234
Q ss_pred chHHHHHHHHHhcCCC--CcccccccceeccchhhHHHHHHHhhhchhHHHHhhhhhhhhhhhhhhhhhhHHHHHHhhcc
Q 048174 636 DEKIACKWILEKMDLK--GYQIGKTKVFLKAGQMAELDAKRAKLLGHSAEVIQSQHRRRVTQKHYITLVQAAVCIQSSCR 713 (1303)
Q Consensus 636 ~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~LE~~R~~~l~~aA~~IQ~~~R~~~~Rk~y~~~r~aai~IQa~~R 713 (1303)
+.+.+|..||..+.++ .||+|.|||||++|+++.||.+|...++.+++.||+.|||++.|++|.+..+.+..+|...+
T Consensus 700 ~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~ 779 (1463)
T COG5022 700 DTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQH 779 (1463)
T ss_pred HHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999998776 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccccccchhhhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 048174 714 GILARRYCKVKKKEAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQAWLRARAAVRAMAALSELRHRKHAKGALSIQTSWRG 793 (1303)
Q Consensus 714 g~laRk~~~~~r~~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~~~~R~~~arr~~~~~~~~~AA~~IQ~~~Rg 793 (1303)
|++.|+.+..--.-.+++.+|..||....|+.|......++.+|.- ..++...+.........+++..+|++||.
T Consensus 780 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~-----i~~~~~~~~~~e~~~~~~~~~L~~~~~rs 854 (1463)
T COG5022 780 GFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT-----IKREKKLRETEEVEFSLKAEVLIQKFGRS 854 (1463)
T ss_pred ccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988777666789999999999999999999999999999941 23333333333445557899999999999
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 048174 794 HRDFSYYKRLRKASVFSQSRWRGIAARREFRKLKMTAKKEE 834 (1303)
Q Consensus 794 ~~aRr~~~~~~kaav~IQ~~~R~~~aRkel~~lk~aa~~~~ 834 (1303)
+..+++|..+.+.++.+|..+|...|++++..++.+.++..
T Consensus 855 ~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~ 895 (1463)
T COG5022 855 LKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSIS 895 (1463)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999998888655
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.1e-197 Score=1835.10 Aligned_cols=711 Identities=36% Similarity=0.576 Sum_probs=666.2
Q ss_pred CCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCC-CCCCCCchHHHHHHHH
Q 048174 5 AGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGV-PFGKLSPHVFAIADAA 83 (1303)
Q Consensus 5 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~-~~~~~~PHifavA~~A 83 (1303)
+.++|||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.|
T Consensus 95 ~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~A 173 (821)
T PTZ00014 95 PMTYGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRA 173 (821)
T ss_pred cCCcchhhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHH
Confidence 5579999999999999999999999999999999999999999999997 9999999999985 5788999999999999
Q ss_pred HHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceE
Q 048174 84 YREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFV 163 (1303)
Q Consensus 84 y~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i 163 (1303)
|+.|...++||||||||||||||||++|+||+|||.+++.. ...+|+++|+++||||||||||||+||||||||||||
T Consensus 174 y~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi 251 (821)
T PTZ00014 174 LENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFM 251 (821)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEE
Confidence 99999999999999999999999999999999999987532 2357999999999999999999999999999999999
Q ss_pred EEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHH
Q 048174 164 EIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDAND 242 (1303)
Q Consensus 164 ~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~ 242 (1303)
+|+||.+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|..++++||+++
T Consensus 252 ~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~ 330 (821)
T PTZ00014 252 QLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKD 330 (821)
T ss_pred EEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHH
Confidence 9999999999999999999999999999999999999999999 7889999999999999999995 5889999999999
Q ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC----ccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhc
Q 048174 243 YLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE----DSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKR 318 (1303)
Q Consensus 243 f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~----d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~ 318 (1303)
|..|+.||++|||+++++.+||+|||||||||||+|.+... |++.+.+. +...++.||+|||||+++|.++||++
T Consensus 331 f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~ 409 (821)
T PTZ00014 331 FEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVK 409 (821)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhce
Confidence 99999999999999999999999999999999999986532 45555543 45689999999999999999999999
Q ss_pred eeeeCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHHhhh
Q 048174 319 VMITPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCINFTN 398 (1303)
Q Consensus 319 ~~~~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaN 398 (1303)
++.++++.|+++++++||..+||||||+||++||+|||.+||.+|.+......+||||||||||+|+.||||||||||||
T Consensus 410 ~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~N 489 (821)
T PTZ00014 410 VTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITN 489 (821)
T ss_pred EEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997766778999999999999999999999999999
Q ss_pred HHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCc
Q 048174 399 EKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRF 478 (1303)
Q Consensus 399 EkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f 478 (1303)
|||||+|++|||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|
T Consensus 490 EkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f 569 (821)
T PTZ00014 490 EMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKY 569 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC-CCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHhhHhhHH
Q 048174 479 IKPKL-TRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSRFKLQLQ 557 (1303)
Q Consensus 479 ~~p~~-~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~fk~sL~ 557 (1303)
.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+.......+..+.+||+++|+.||+
T Consensus 570 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~ 649 (821)
T PTZ00014 570 KPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLD 649 (821)
T ss_pred cCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHH
Confidence 99985 45799999999999999999999999999999999999999999999998654333344466899999999999
Q ss_pred HHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhcc-ccc
Q 048174 558 QLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQ-NYD 636 (1303)
Q Consensus 558 ~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~-~~~ 636 (1303)
.||++|++|+||||||||||+.++|+.||..+|++||||+||||+|||+++|||+|++|.+|+.||++|.+..... ..|
T Consensus 650 ~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d 729 (821)
T PTZ00014 650 SLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLD 729 (821)
T ss_pred HHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875433 358
Q ss_pred hHHHHHHHHHhcCC--CCcccccccceeccchhhHHHHHHHhhhc---hhHHHHhhhhhhhhhhhhhhhhhhHHHHHHhh
Q 048174 637 EKIACKWILEKMDL--KGYQIGKTKVFLKAGQMAELDAKRAKLLG---HSAEVIQSQHRRRVTQKHYITLVQAAVCIQSS 711 (1303)
Q Consensus 637 ~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~LE~~R~~~l~---~aA~~IQ~~~R~~~~Rk~y~~~r~aai~IQa~ 711 (1303)
++++|+.||..+++ ++|+||+||||||++++..||.+|.+++. .+++.||++||+|++|++|++++.+++.||+.
T Consensus 730 ~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~ 809 (821)
T PTZ00014 730 PKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAH 809 (821)
T ss_pred HHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999876 48999999999999999999998888764 57889999999999999998888888888888
Q ss_pred ccccceecc
Q 048174 712 CRGILARRY 720 (1303)
Q Consensus 712 ~Rg~laRk~ 720 (1303)
||||++++.
T Consensus 810 ~R~~l~~~~ 818 (821)
T PTZ00014 810 LRRHLVIAE 818 (821)
T ss_pred HHHHHHHhc
Confidence 887777653
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.7e-189 Score=1743.14 Aligned_cols=673 Identities=80% Similarity=1.271 Sum_probs=647.7
Q ss_pred CCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHH
Q 048174 6 GGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYR 85 (1303)
Q Consensus 6 ~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 85 (1303)
+|||||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|.+|++++|+.|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEE
Q 048174 86 EMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEI 165 (1303)
Q Consensus 86 ~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l 165 (1303)
+|.+.++||||||||||||||||++|+||+|||.+++.......+|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555567899999999999999999999999999999999999
Q ss_pred EEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeecccCChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHHH
Q 048174 166 QFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCAAPPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYLA 245 (1303)
Q Consensus 166 ~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 245 (1303)
+||.+|.|+||+|.+|||||||||+|++||||||||||||++++++++.|+|.++.+|+||++++|..++++||+++|..
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC-ccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 048174 246 TRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE-DSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITPE 324 (1303)
Q Consensus 246 ~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~-d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 324 (1303)
|+.||+.|||+++++.+||+|||||||||||+|....+ |++.+.+..+...++.||+||||++++|.++||++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987654 66666665566789999999999999999999999999999
Q ss_pred ceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHHhhhHHHHhH
Q 048174 325 EIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQQH 404 (1303)
Q Consensus 325 e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~~ 404 (1303)
|.+++++++++|.++||+|||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+||++
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998777789999999999999999999999999999999999
Q ss_pred HhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCcccCCCC
Q 048174 405 FNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFIKPKLT 484 (1303)
Q Consensus 405 f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~~ 484 (1303)
|+++||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHhhHhhHHHHHHHHc
Q 048174 485 RSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSRFKLQLQQLMDTLN 564 (1303)
Q Consensus 485 ~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~ 564 (1303)
+..|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+.....+.+.+++.||+++||.||++||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987655545556789999999999999999999
Q ss_pred cCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhccccchHHHHHHH
Q 048174 565 STEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQNYDEKIACKWI 644 (1303)
Q Consensus 565 ~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~~~~~~~~~~~i 644 (1303)
+|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......++++.|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766667889999999
Q ss_pred HHhcCCCCcccccccceeccchhhHHHHHHHhhh
Q 048174 645 LEKMDLKGYQIGKTKVFLKAGQMAELDAKRAKLL 678 (1303)
Q Consensus 645 l~~~~~~~~~iGkTkVFlr~~~~~~LE~~R~~~l 678 (1303)
|..+++++|+||+||||||++++..||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998764
No 4
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.2e-185 Score=1716.35 Aligned_cols=664 Identities=50% Similarity=0.850 Sum_probs=627.3
Q ss_pred CCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHH
Q 048174 7 GADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYRE 86 (1303)
Q Consensus 7 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 86 (1303)
|+|||+.|++|||++||++|+.||..++||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCC--cCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEE
Q 048174 87 MINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTA--AEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVE 164 (1303)
Q Consensus 87 m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~--~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~ 164 (1303)
|..+++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986432 234689999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHH
Q 048174 165 IQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDY 243 (1303)
Q Consensus 165 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 243 (1303)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q 048174 244 LATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITP 323 (1303)
Q Consensus 244 ~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 323 (1303)
..|+.||+.|||+++++.+||+|||||||||||+|.+.+++.+.+.. +...++.||+||||++++|.++||++++.++
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 317 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVTR 317 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEEC
Confidence 99999999999999999999999999999999999987765543332 2357999999999999999999999999999
Q ss_pred CceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcC---CCCceEEEeeeccccccCCCCCHHHHHHHhhhHH
Q 048174 324 EEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQD---PHSKCLIGVLDIYGFESFESNSFEQFCINFTNEK 400 (1303)
Q Consensus 324 ~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEk 400 (1303)
+|.++++++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+
T Consensus 318 ~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 397 (691)
T cd01380 318 SEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEK 397 (691)
T ss_pred CeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHH
Confidence 9999999999999999999999999999999999999999876 4567899999999999999999999999999999
Q ss_pred HHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhc--CCCCc
Q 048174 401 LQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFK--DHKRF 478 (1303)
Q Consensus 401 Lq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~f 478 (1303)
||++|++|+|+.||++|.+|||+|.+|+|.||++|||||+++ .|||++|||||++|++||++|++||++.++ +|+.|
T Consensus 398 LQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~ 476 (691)
T cd01380 398 LQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHF 476 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCc
Confidence 999999999999999999999999999999999999999974 799999999999999999999999999998 89999
Q ss_pred ccCCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccc-----------------cC
Q 048174 479 IKPKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEET-----------------TK 541 (1303)
Q Consensus 479 ~~p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~-----------------~~ 541 (1303)
.+|+.....|+|+||||+|+|+++||++||+|.++++++++|+.|+|+||+.||+.....+ ..
T Consensus 477 ~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (691)
T cd01380 477 EKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRA 556 (691)
T ss_pred cCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhccccccccccccccccccccccc
Confidence 9999888999999999999999999999999999999999999999999999997532110 01
Q ss_pred CCCccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHH
Q 048174 542 SSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLD 621 (1303)
Q Consensus 542 ~~~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~ 621 (1303)
..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.
T Consensus 557 ~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ 636 (691)
T cd01380 557 KQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQ 636 (691)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHH
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchhccccchHHHHHHHHHhcCC--CCcccccccceeccchhhHHHHHH
Q 048174 622 RFGILLPEIRKQNYDEKIACKWILEKMDL--KGYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 622 Ry~~L~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
||++|++.......+.+++|+.||..+.. ..|+||+||||||++++..||.+|
T Consensus 637 ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 637 RYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 99999998664456889999999999875 589999999999999999999865
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=9.9e-185 Score=1704.44 Aligned_cols=660 Identities=45% Similarity=0.757 Sum_probs=625.0
Q ss_pred CCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHH
Q 048174 7 GADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYRE 86 (1303)
Q Consensus 7 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 86 (1303)
|||||+.|++|||++||++|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEEE
Q 048174 87 MINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQ 166 (1303)
Q Consensus 87 m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l~ 166 (1303)
|.++++||||||||||||||||++|+||+|||.+++.. ..|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred EcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHHH
Q 048174 167 FDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYLA 245 (1303)
Q Consensus 167 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 245 (1303)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 688999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC---ccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 048174 246 TRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE---DSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMIT 322 (1303)
Q Consensus 246 ~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~---d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~ 322 (1303)
|+.||+.|||+++++.+||+|||||||||||+|.+.+. +.+.+.+ ...++.||.||||++++|.++||++++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987643 3455554 35799999999999999999999999999
Q ss_pred CCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcC-CCCceEEEeeeccccccCCCCCHHHHHHHhhhHHH
Q 048174 323 PEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQD-PHSKCLIGVLDIYGFESFESNSFEQFCINFTNEKL 401 (1303)
Q Consensus 323 ~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkL 401 (1303)
+||.+.++++++||..+||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754 45678999999999999999999999999999999
Q ss_pred HhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCcccC
Q 048174 402 QQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFIKP 481 (1303)
Q Consensus 402 q~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 481 (1303)
|++|+++||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccc-cCCCCccchhHhhHhhHHHH
Q 048174 482 KL-TRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEET-TKSSKFSSIGSRFKLQLQQL 559 (1303)
Q Consensus 482 ~~-~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~-~~~~~~~tv~~~fk~sL~~L 559 (1303)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|+||+.||+...... ..+.+..||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 74 45799999999999999999999999999999999999999999999998643211 22336689999999999999
Q ss_pred HHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhcc--ccch
Q 048174 560 MDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQ--NYDE 637 (1303)
Q Consensus 560 m~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~--~~~~ 637 (1303)
|++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3467
Q ss_pred HHHHHHHHHhcCC--CCcccccccceeccchhhHHHHHH
Q 048174 638 KIACKWILEKMDL--KGYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 638 ~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
+.+|+.|++.+.+ ++|+||+||||||++++..||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998765 589999999999999999999865
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-184 Score=1579.59 Aligned_cols=731 Identities=40% Similarity=0.668 Sum_probs=680.0
Q ss_pred CCCCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHH
Q 048174 3 SPAGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADA 82 (1303)
Q Consensus 3 ~~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~ 82 (1303)
....||+|++.|+.++|++++.||+.||..+.||||+|+|||+||||+.++ ||++++|++|+|..+.+.|||+||||+.
T Consensus 5 ~~~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~ 83 (1001)
T KOG0164|consen 5 RDEVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADA 83 (1001)
T ss_pred ccccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHH
Confidence 446799999999999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCc-CCCcHHHHHHhhchHHHhhcccccccCCCCCcccc
Q 048174 83 AYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAA-EGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGK 161 (1303)
Q Consensus 83 Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~-~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK 161 (1303)
||+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...+.+++|+|||||||||||||.||||||||||
T Consensus 84 aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGK 163 (1001)
T KOG0164|consen 84 AYRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGK 163 (1001)
T ss_pred HHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhc
Confidence 99999999999999999999999999999999999999865442 23567889999999999999999999999999999
Q ss_pred eEEEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCC-CCCCCccccCCCcccccCCCC
Q 048174 162 FVEIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLG-NPTSFHYLNQSNCYELVGVND 239 (1303)
Q Consensus 162 ~i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~dd 239 (1303)
||.|+||-.|..+|+.|.+|||||||||.|.+||||||||||||. +.+.+...|+|. ++..|+|||++ |..+.+++|
T Consensus 164 YMDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD 242 (1001)
T KOG0164|consen 164 YMDINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSIND 242 (1001)
T ss_pred ceeeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhccccc
Confidence 999999999999999999999999999999999999999999999 777888999995 89999999998 788999999
Q ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhce
Q 048174 240 ANDYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRV 319 (1303)
Q Consensus 240 ~~~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~ 319 (1303)
+.+|..++.||.+|||+++|+.+||+|+|||||||||+|.+..+ +..+.+. ..+..+|+||++..++|+++||.|+
T Consensus 243 ~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed-~~~~~~~---~~l~~~aell~v~~del~~aL~~Rt 318 (1001)
T KOG0164|consen 243 ASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED-SSGIVNG---AQLKYIAELLSVTGDELERALTSRT 318 (1001)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc-ccccchh---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987764 4333332 5799999999999999999999999
Q ss_pred eeeCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCC-----CCceEEEeeeccccccCCCCCHHHHHH
Q 048174 320 MITPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDP-----HSKCLIGVLDIYGFESFESNSFEQFCI 394 (1303)
Q Consensus 320 ~~~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~-----~~~~~IgiLDI~GFE~f~~NsfEQlcI 394 (1303)
+.++||.+.+++++.||.++||||||++|+|||.|||.+||.+|.... .+...||+|||||||+|+.||||||||
T Consensus 319 vaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcI 398 (1001)
T KOG0164|consen 319 VAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCI 398 (1001)
T ss_pred HHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHH
Confidence 999999999999999999999999999999999999999999996431 235899999999999999999999999
Q ss_pred HhhhHHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCC-CchHHHHHHHHHHhc
Q 048174 395 NFTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHENFSQKLYQTFK 473 (1303)
Q Consensus 395 NyaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~-~td~~f~~kl~~~~~ 473 (1303)
||+||||||.|++-+++.|||||.+|||.|..|+|.+|.-++||+|.+..|||++|||+|+.|+ .||.+|+++|.+.++
T Consensus 399 NYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~ 478 (1001)
T KOG0164|consen 399 NYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLK 478 (1001)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999986 599999999999999
Q ss_pred CCCCcccCC-------CCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCccccc-CCCCc
Q 048174 474 DHKRFIKPK-------LTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETT-KSSKF 545 (1303)
Q Consensus 474 ~~~~f~~p~-------~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~-~~~~~ 545 (1303)
+|++|..-+ ....+|.|.||||+|+|+|.||++||+|.|..|+-.+|.+|+|++++.|||....... ...++
T Consensus 479 ~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP 558 (1001)
T KOG0164|consen 479 KHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRP 558 (1001)
T ss_pred hCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCC
Confidence 999997533 2346899999999999999999999999999999999999999999999996543322 22467
Q ss_pred cchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcc
Q 048174 546 SSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGI 625 (1303)
Q Consensus 546 ~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~ 625 (1303)
+|+|++||.|+..||+.|.+-+|+||||||||+.+.|+.||...|.+|.+|+|+||.+|++|+||.+|.+|+.|+.||++
T Consensus 559 ~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKm 638 (1001)
T KOG0164|consen 559 PTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKM 638 (1001)
T ss_pred CcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcc--ccchHHHHHHHHHhcCC-CCcccccccceeccch-hhHHHHHHHhhhchhHHHHhhhhhhhhhhhhhhhh
Q 048174 626 LLPEIRKQ--NYDEKIACKWILEKMDL-KGYQIGKTKVFLKAGQ-MAELDAKRAKLLGHSAEVIQSQHRRRVTQKHYITL 701 (1303)
Q Consensus 626 L~~~~~~~--~~~~~~~~~~il~~~~~-~~~~iGkTkVFlr~~~-~~~LE~~R~~~l~~aA~~IQ~~~R~~~~Rk~y~~~ 701 (1303)
+++..|+. ..++++.|..|++..+. +++.+|+||||+|... +..||..|.+++...++.||+.||||++|.+|++|
T Consensus 639 i~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rm 718 (1001)
T KOG0164|consen 639 ICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRM 718 (1001)
T ss_pred hCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887753 34678999999999987 4899999999999865 78999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccccceeccccccchhhhHHHHHHHHHHHHHHHhhcch
Q 048174 702 VQAAVCIQSSCRGILARRYCKVKKKEAAAVKIQKNSRTMMTRKAYSNV 749 (1303)
Q Consensus 702 r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~aRr~~~k~ 749 (1303)
+++++.|+ |||.+ +....+..||+.+|+++.++.|.+-
T Consensus 719 ka~~~ii~-wyR~~---------K~ks~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 719 KASATIIR-WYRRY---------KLKSYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHH-HHHHH---------HHHHHHHHHHHHHHhhhhccccCCC
Confidence 99999999 88832 2234677899999999999998763
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.1e-184 Score=1706.07 Aligned_cols=665 Identities=43% Similarity=0.744 Sum_probs=624.4
Q ss_pred CCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHH
Q 048174 5 AGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAY 84 (1303)
Q Consensus 5 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay 84 (1303)
.+++|||+.|++|||++||++|+.||..+.||||+|+||||||||+.+| +|++++|+.|+++..+++|||||+||+.||
T Consensus 4 ~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay 82 (693)
T cd01377 4 FDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNAY 82 (693)
T ss_pred ccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCC------cCCCcHHHHHHhhchHHHhhcccccccCCCCCc
Q 048174 85 REMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTA------AEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSR 158 (1303)
Q Consensus 85 ~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~------~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSR 158 (1303)
+.|...++||||||||||||||||++|+||+||+.+++... .....|+++|+++||||||||||||++||||||
T Consensus 83 ~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSR 162 (693)
T cd01377 83 RSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSR 162 (693)
T ss_pred HHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccc
Confidence 99999999999999999999999999999999999986432 124579999999999999999999999999999
Q ss_pred ccceEEEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCC-CCCccccCCCcccccC
Q 048174 159 FGKFVEIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNP-TSFHYLNQSNCYELVG 236 (1303)
Q Consensus 159 fGK~i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~-~~~~yl~~~~~~~~~~ 236 (1303)
||||++|+||.+|+|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++ .+|+||++++| .+++
T Consensus 163 FGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~~ 241 (693)
T cd01377 163 FGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIPG 241 (693)
T ss_pred cceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCCC
Confidence 999999999999999999999999999999999999999999999999 78899999999876 89999999875 4789
Q ss_pred CCCHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC-ccceecCcccHHHHHHHHHhcCCCHHHHHHHH
Q 048174 237 VNDANDYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE-DSSVVKDNESKFHLQMTAKLLMCDPGELEDAL 315 (1303)
Q Consensus 237 ~dd~~~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~-d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L 315 (1303)
+||+++|..|+.||+.|||+++++.+||+|||||||||||+|...++ |.+.+.+. ..+..||.||||++++|.++|
T Consensus 242 ~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l 318 (693)
T cd01377 242 VDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKAL 318 (693)
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999987644 55555443 579999999999999999999
Q ss_pred hhceeeeCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHH
Q 048174 316 CKRVMITPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCIN 395 (1303)
Q Consensus 316 ~~~~~~~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcIN 395 (1303)
|++++.++++.+.+++++++|..+||+|||+||++||+|||.+||.+|.+......+||||||||||+|+.|||||||||
T Consensus 319 ~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 319 LHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred cceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777789999999999999999999999999
Q ss_pred hhhHHHHhHHhHhhHHhhHhhhhccCCCcccccc-cChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcC
Q 048174 396 FTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKD 474 (1303)
Q Consensus 396 yaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~-~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 474 (1303)
||||+||++|+++||+.||++|.+|||+|..|+| .||++|||||+++|.|||++|||||++|++||++|++||++.+++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred CCCc--ccCCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCccc----------ccCC
Q 048174 475 HKRF--IKPKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEE----------TTKS 542 (1303)
Q Consensus 475 ~~~f--~~p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~----------~~~~ 542 (1303)
|+.| .+++.....|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+..... ..+.
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~ 558 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKKG 558 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCcC
Confidence 9887 344556689999999999999999999999999999999999999999999999753221 1122
Q ss_pred CCccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHh
Q 048174 543 SKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDR 622 (1303)
Q Consensus 543 ~~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~R 622 (1303)
+++.||+++|+.||++||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|++|
T Consensus 559 ~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~r 638 (693)
T cd01377 559 GSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQR 638 (693)
T ss_pred CccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchhc-cccchHHHHHHHHHhcCCC--CcccccccceeccchhhHHHHHH
Q 048174 623 FGILLPEIRK-QNYDEKIACKWILEKMDLK--GYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 623 y~~L~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
|++|++..+. ...+.++.|+.||+.++++ +|+||+||||||++++..||.+|
T Consensus 639 Y~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 639 YEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999987642 3457899999999998774 89999999999999999999875
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.4e-183 Score=1695.46 Aligned_cols=662 Identities=44% Similarity=0.745 Sum_probs=627.6
Q ss_pred CCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHH
Q 048174 7 GADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYRE 86 (1303)
Q Consensus 7 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 86 (1303)
|||||+.|++|||++||++|+.||.+++||||+|+||||||||+.+| +|++++|+.|+++...++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEEE
Q 048174 87 MINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQ 166 (1303)
Q Consensus 87 m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l~ 166 (1303)
|..+++||||||||||||||||++|+||+||+.+++... ....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986432 2356999999999999999999999999999999999999
Q ss_pred EcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHHH
Q 048174 167 FDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYLA 245 (1303)
Q Consensus 167 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 245 (1303)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeCC-
Q 048174 246 TRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITPE- 324 (1303)
Q Consensus 246 ~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~- 324 (1303)
|+.||+.|||+++++.+||+|||||||||||+|...+++.+.+.+ ...++.||.||||++++|.++||++++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~ 315 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDGAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGGG 315 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCCccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCCC
Confidence 999999999999999999999999999999999887665545544 3579999999999999999999999999998
Q ss_pred ---ceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcC-CCCceEEEeeeccccccCCCCCHHHHHHHhhhHH
Q 048174 325 ---EIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQD-PHSKCLIGVLDIYGFESFESNSFEQFCINFTNEK 400 (1303)
Q Consensus 325 ---e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEk 400 (1303)
|.+++++++++|.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.||||||||||||||
T Consensus 316 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEk 395 (674)
T cd01378 316 GRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEK 395 (674)
T ss_pred CCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999876 4567899999999999999999999999999999
Q ss_pred HHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhc-CCCcccccchhhhcCC-CCchHHHHHHHHHHhcCCCCc
Q 048174 401 LQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHENFSQKLYQTFKDHKRF 478 (1303)
Q Consensus 401 Lq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~-~p~Gil~lLdee~~~p-~~td~~f~~kl~~~~~~~~~f 478 (1303)
||++|++++|+.||++|.+|||+|..|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++.+++|++|
T Consensus 396 LQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~ 475 (674)
T cd01378 396 LQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHS 475 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999 8999999999999999 999999999999999999998
Q ss_pred ccCCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHhhHhhHHH
Q 048174 479 IKPKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSRFKLQLQQ 558 (1303)
Q Consensus 479 ~~p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~fk~sL~~ 558 (1303)
.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+....... ..+.+||+++||.||+.
T Consensus 476 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~~ 554 (674)
T cd01378 476 DHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSANA 554 (674)
T ss_pred CCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999985433222 23568999999999999
Q ss_pred HHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhc-cccch
Q 048174 559 LMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRK-QNYDE 637 (1303)
Q Consensus 559 Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~-~~~~~ 637 (1303)
||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|++..+. ...++
T Consensus 555 Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~ 634 (674)
T cd01378 555 LVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGDA 634 (674)
T ss_pred HHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987532 34688
Q ss_pred HHHHHHHHHhcCC--CCcccccccceeccc-hhhHHHHHH
Q 048174 638 KIACKWILEKMDL--KGYQIGKTKVFLKAG-QMAELDAKR 674 (1303)
Q Consensus 638 ~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~LE~~R 674 (1303)
+++|+.||..+++ ++|+||+||||||++ ++..||.+|
T Consensus 635 k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 635 KSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 9999999999876 489999999999997 689999865
No 9
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2.1e-182 Score=1682.37 Aligned_cols=654 Identities=46% Similarity=0.786 Sum_probs=613.3
Q ss_pred CCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHH
Q 048174 6 GGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYR 85 (1303)
Q Consensus 6 ~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 85 (1303)
.++|||+.|++|||++||++|+.||.+++||||+|+||||||||+.+| +|++++++.|+++. .+|||||+||++||+
T Consensus 8 ~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~ 84 (677)
T cd01383 8 DGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTAYN 84 (677)
T ss_pred cCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999997 99999999998764 469999999999999
Q ss_pred HHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEE
Q 048174 86 EMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEI 165 (1303)
Q Consensus 86 ~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l 165 (1303)
.|..+++||||||||||||||||++|+||+||+.+++. ..|+++|+++||||||||||||++||||||||||++|
T Consensus 85 ~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l 159 (677)
T cd01383 85 EMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEI 159 (677)
T ss_pred HHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEE
Confidence 99999999999999999999999999999999999753 2699999999999999999999999999999999999
Q ss_pred EEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHH
Q 048174 166 QFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYL 244 (1303)
Q Consensus 166 ~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~ 244 (1303)
+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+.+|.
T Consensus 160 ~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~ 239 (677)
T cd01383 160 HFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFH 239 (677)
T ss_pred EECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999 68899999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCc-cceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q 048174 245 ATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEED-SSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITP 323 (1303)
Q Consensus 245 ~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d-~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 323 (1303)
.|+.||+.|||+++++..||+|||||||||||+|.+.+++ .+.+.+ .+.+..||.||||++++|.++||++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 316 (677)
T cd01383 240 TLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHVN 316 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEeC
Confidence 9999999999999999999999999999999999876553 233332 357999999999999999999999999999
Q ss_pred CceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCC-CCceEEEeeeccccccCCCCCHHHHHHHhhhHHHH
Q 048174 324 EEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDP-HSKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQ 402 (1303)
Q Consensus 324 ~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq 402 (1303)
|+.+.++++++||..+||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.||||||||||||||||
T Consensus 317 ~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 396 (677)
T cd01383 317 NDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQ 396 (677)
T ss_pred CceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998654 34679999999999999999999999999999999
Q ss_pred hHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCcccCC
Q 048174 403 QHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFIKPK 482 (1303)
Q Consensus 403 ~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~ 482 (1303)
++|+++||+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|+.|.+++
T Consensus 397 ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~ 476 (677)
T cd01383 397 QHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGER 476 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred CCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCC-----cc------cccCCCCccchhHh
Q 048174 483 LTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPI-----SE------ETTKSSKFSSIGSR 551 (1303)
Q Consensus 483 ~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~-----~~------~~~~~~~~~tv~~~ 551 (1303)
...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. .....++..||+++
T Consensus 477 --~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~ 553 (677)
T cd01383 477 --GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGTK 553 (677)
T ss_pred --CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHHH
Confidence 468999999999999999999999999999999999999999876 55421 00 01122356899999
Q ss_pred hHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchh
Q 048174 552 FKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIR 631 (1303)
Q Consensus 552 fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~ 631 (1303)
|+.||++||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++..+
T Consensus 554 fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~ 633 (677)
T cd01383 554 FKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENI 633 (677)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccchHHHHHHHHHhcCCC--CcccccccceeccchhhHHHHHH
Q 048174 632 KQNYDEKIACKWILEKMDLK--GYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 632 ~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
. ..+++.+|+.||+.++++ +|++|+||||||.++++.||..|
T Consensus 634 ~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 634 A-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred C-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 3 357888999999998764 89999999999999999999865
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=2.1e-182 Score=1685.00 Aligned_cols=660 Identities=40% Similarity=0.695 Sum_probs=618.0
Q ss_pred CCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHH
Q 048174 6 GGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYR 85 (1303)
Q Consensus 6 ~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 85 (1303)
+|||||+.|++|||++||++|+.||..++||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEE
Q 048174 86 EMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEI 165 (1303)
Q Consensus 86 ~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l 165 (1303)
.|..+++||||||||||||||||++|+||+||+.+++.. ...|+++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 24699999999999999999999999999999999999
Q ss_pred EEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHH
Q 048174 166 QFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYL 244 (1303)
Q Consensus 166 ~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~ 244 (1303)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999998889999999999
Q ss_pred HHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCc---cceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceee
Q 048174 245 ATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEED---SSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMI 321 (1303)
Q Consensus 245 ~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d---~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~ 321 (1303)
.|+.||+.|||+++++.+||+|||||||||||+|.....+ .+.+.+ ...++.||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 9999999999999999999999999999999999876532 233433 3579999999999999999999999999
Q ss_pred eCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHHhhhHHH
Q 048174 322 TPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCINFTNEKL 401 (1303)
Q Consensus 322 ~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkL 401 (1303)
+++|.+.+++++++|.++||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 3467999999999999999999999999999999
Q ss_pred HhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCcccC
Q 048174 402 QQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFIKP 481 (1303)
Q Consensus 402 q~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 481 (1303)
|++||++||+.||++|.+|||+|..|+|.||++|||||+++|.|||+||||||++|+++|++|++|++..+++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCccc---------c--cCCCCccchhH
Q 048174 482 KLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEE---------T--TKSSKFSSIGS 550 (1303)
Q Consensus 482 ~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~---------~--~~~~~~~tv~~ 550 (1303)
+.+...|+|+||||+|+|+++||++||+|.++++++++|..|+|++|+.||+..... + .+..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 888889999999999999999999999999999999999999999999999753210 0 01124579999
Q ss_pred hhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccch
Q 048174 551 RFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEI 630 (1303)
Q Consensus 551 ~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~ 630 (1303)
+|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hccccchHHHHHHHHHhcCC--CCcccccccceeccchhhHHHHHH
Q 048174 631 RKQNYDEKIACKWILEKMDL--KGYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 631 ~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
.....+.+..+..++..+++ +.|+||+||||||++++..||.+|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 43333344556788888765 479999999999999999999875
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.7e-181 Score=1749.36 Aligned_cols=950 Identities=36% Similarity=0.568 Sum_probs=802.0
Q ss_pred CCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHH
Q 048174 7 GADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYRE 86 (1303)
Q Consensus 7 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 86 (1303)
.+|||+.|+|||||+|||||+.||..+.||||+|.+||+||||+++| ||+++++++|+|+.+.++||||||||+.||+.
T Consensus 83 k~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~ 161 (1930)
T KOG0161|consen 83 KVEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRN 161 (1930)
T ss_pred ccccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcC---CCcHHHHHHhhchHHHhhcccccccCCCCCcccceE
Q 048174 87 MINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAE---GRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFV 163 (1303)
Q Consensus 87 m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i 163 (1303)
|+.++.||||+|+|||||||||+||.||+|||.++++.... +.+++++|+++||||||||||+|++|+|||||||||
T Consensus 162 mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfi 241 (1930)
T KOG0161|consen 162 MLQDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFI 241 (1930)
T ss_pred HHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeE
Confidence 99999999999999999999999999999999998753211 258999999999999999999999999999999999
Q ss_pred EEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCC-CCCCccccCCCcccccCCCCHH
Q 048174 164 EIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGN-PTSFHYLNQSNCYELVGVNDAN 241 (1303)
Q Consensus 164 ~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~-~~~~~yl~~~~~~~~~~~dd~~ 241 (1303)
.|+|+.+|.|+||.|.+||||||||++|+++||||||||||++ ..+.++..|.|.+ +.+|.|+.++.. .++|+||++
T Consensus 242 rI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~e 320 (1930)
T KOG0161|consen 242 RIHFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAE 320 (1930)
T ss_pred EEecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHH
Confidence 9999999999999999999999999999999999999999999 6778899999975 899999999876 899999999
Q ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC-ccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhcee
Q 048174 242 DYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE-DSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVM 320 (1303)
Q Consensus 242 ~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~-d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~ 320 (1303)
+|..|..||++|||+++++.+||+|+|||||||||.|..... +.+.+.+. ..++.+|.||||+.++|.++++++.+
T Consensus 321 ef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~llg~~~~~~~~al~~pri 397 (1930)
T KOG0161|consen 321 EFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACHLLGINVEEFLKALLRPRI 397 (1930)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHHHcCCCHHHHHHHhcccce
Confidence 999999999999999999999999999999999999998744 55555553 46899999999999999999999999
Q ss_pred eeCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHHhhhHH
Q 048174 321 ITPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCINFTNEK 400 (1303)
Q Consensus 321 ~~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEk 400 (1303)
.++++.+.+..+.+|+..+..+|||++|+|||.|||.+||.+|....+..+|||||||+|||+|+.||||||||||+|||
T Consensus 398 Kvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEk 477 (1930)
T KOG0161|consen 398 KVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEK 477 (1930)
T ss_pred eccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777788999999999999999999999999999999
Q ss_pred HHhHHhHhhHHhhHhhhhccCCCcccccc-cChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHh-cCCCCc
Q 048174 401 LQQHFNQNVFKMEQNDYRNEEIDWSYVHF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTF-KDHKRF 478 (1303)
Q Consensus 401 Lq~~f~~~vf~~eq~ey~~EgI~w~~i~~-~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f 478 (1303)
|||+||+|||..||++|.+|||.|.||+| .|-++|||||++ |+|||++|||||++|++||.+|++||...| ++|+.|
T Consensus 478 LQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f 556 (1930)
T KOG0161|consen 478 LQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKF 556 (1930)
T ss_pred HHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccc
Confidence 99999999999999999999999999999 699999999995 569999999999999999999999999999 899999
Q ss_pred ccCC--CCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcc-----------cccCCCCc
Q 048174 479 IKPK--LTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISE-----------ETTKSSKF 545 (1303)
Q Consensus 479 ~~p~--~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~-----------~~~~~~~~ 545 (1303)
.+|+ ....+|.|.||||+|.|+++||++||+|++++.++.+|+.|++++|+.||++... ...+++.|
T Consensus 557 ~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F 636 (1930)
T KOG0161|consen 557 QKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSF 636 (1930)
T ss_pred cCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcch
Confidence 9997 4568999999999999999999999999999999999999999999999987211 23455678
Q ss_pred cchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcc
Q 048174 546 SSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGI 625 (1303)
Q Consensus 546 ~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~ 625 (1303)
.||+..+|.||+.||.+|++|+|||||||.||+.|.|+.+|.++|+.||||.||||.|||+|.|||.|++|.+|..||.+
T Consensus 637 ~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~l 716 (1930)
T KOG0161|consen 637 RTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYEL 716 (1930)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cccchhcc-ccchHHHHHHHHHhcCC--CCcccccccceeccchhhHHHHHHHhhhchhHHHHhhhhhhhhhhhhhhhhh
Q 048174 626 LLPEIRKQ-NYDEKIACKWILEKMDL--KGYQIGKTKVFLKAGQMAELDAKRAKLLGHSAEVIQSQHRRRVTQKHYITLV 702 (1303)
Q Consensus 626 L~~~~~~~-~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~LE~~R~~~l~~aA~~IQ~~~R~~~~Rk~y~~~r 702 (1303)
+.+....+ ..|.+.+|..|+..+.. .-|+||.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+..
T Consensus 717 la~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~ 796 (1930)
T KOG0161|consen 717 LAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRL 796 (1930)
T ss_pred hhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554433 35678999999998755 3699999999999999999999999998888777777777776666653322
Q ss_pred hHHHHHHhhccccceeccccccchhhhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048174 703 QAAVCIQSSCRGILARRYCKVKKKEAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQAWLRARAAVRAMAALSELRHRKHAK 782 (1303)
Q Consensus 703 ~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~~~~R~~~arr~~~~~~~~~ 782 (1303)
.+..|+.+||+++|.|+..|.|.+++. +...+.++....-...-..
T Consensus 797 ----------------------~~~~ai~~iQ~N~r~~~~lr~w~W~~L-----------f~kvkPLL~~~~~ee~~~~- 842 (1930)
T KOG0161|consen 797 ----------------------QQLDAIKVIQRNIRAYLKLRTWPWWRL-----------FTKVKPLLKVTKTEEEMRA- 842 (1930)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHhhccCHHHHH-----------HHHHHHHHHhhhhHHHHHH-
Confidence 133578899999999999999985543 3333333222211000000
Q ss_pred HHHHHHHHHh----hHHHHHH------HHHHhhhhHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Q 048174 783 GALSIQTSWR----GHRDFSY------YKRLRKASVFSQS-RWRGIAARREFRKLKMTAKKEERGQEITES-QESQEAVQ 850 (1303)
Q Consensus 783 AA~~IQ~~~R----g~~aRr~------~~~~~kaav~IQ~-~~R~~~aRkel~~lk~aa~~~~LE~kl~eL-~rLe~ee~ 850 (1303)
-...|+..-. .-..|+. -....+..+..|. .-+...+..+....+..++...++.++.++ .+++.+++
T Consensus 843 ~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee 922 (1930)
T KOG0161|consen 843 KEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEE 922 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111110 0011111 1112234444443 344555666667777788888899999999 99988887
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhc----------chhhhhhccCC-CccCc
Q 048174 851 YIVDETSEVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVED----------CDDIDRAIEPH-PITGK 919 (1303)
Q Consensus 851 ~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee----------~~~~k~~l~e~-~~~~e 919 (1303)
.... .+.+..+++.++++++.++++.+..+.+++.|+...+++++.+.++ +.++++.+++. ..+.+
T Consensus 923 ~~~~---le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~ 999 (1930)
T KOG0161|consen 923 KNAE---LERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQD 999 (1930)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 6777778889999999999999999999999988888877666655 34455554444 11111
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
Q 048174 920 IPCSNEEEEKIENLSAEVEKLKALLQAEKQRADDSAR-----------------------------------KCAEARVL 964 (1303)
Q Consensus 920 ~~~~~~~~~ki~~L~~E~~kLe~~leel~~~~~ele~-----------------------------------~~~e~~~~ 964 (1303)
.+....+++..|.+.+.+|++.+++++..++..++ ++.+.+.+
T Consensus 1000 --~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~E 1077 (1930)
T KOG0161|consen 1000 --DLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESE 1077 (1930)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12346778888888888888888777777663222 22222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 965 SEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 965 ~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+..+..++++....+.+|+..+.+|+.++.++++++.
T Consensus 1078 l~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1078 LSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333336666667777788888888877777776666
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=7.2e-182 Score=1683.78 Aligned_cols=666 Identities=39% Similarity=0.652 Sum_probs=623.5
Q ss_pred CCCCCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCC-CCCCCchHHHHH
Q 048174 2 VSPAGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVP-FGKLSPHVFAIA 80 (1303)
Q Consensus 2 ~~~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~-~~~~~PHifavA 80 (1303)
+....++|||+.|++|||++||++|+.||.+++||||+|+||||||||+.+| +|++++++.|++.. .+++|||||+||
T Consensus 3 ~~~~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA 81 (692)
T cd01385 3 QRQQREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIA 81 (692)
T ss_pred CCCcCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHH
Confidence 3566789999999999999999999999999999999999999999999997 99999999999887 789999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCccc
Q 048174 81 DAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFG 160 (1303)
Q Consensus 81 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfG 160 (1303)
++||+.|..+++||||||||||||||||++|+||+||+.+++.. .....|+++|+++||||||||||||++|+||||||
T Consensus 82 ~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFG 160 (692)
T cd01385 82 DVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFG 160 (692)
T ss_pred HHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccc
Confidence 99999999999999999999999999999999999999997532 22357999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCC
Q 048174 161 KFVEIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVND 239 (1303)
Q Consensus 161 K~i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd 239 (1303)
||++|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.++|.++.+|+||++++|...+++||
T Consensus 161 K~i~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd 240 (692)
T cd01385 161 KFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDE 240 (692)
T ss_pred eeEEEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCH
Confidence 9999999999999999999999999999999999999999999999 688999999998888999999998877789999
Q ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC----ccceecCcccHHHHHHHHHhcCCCHHHHHHHH
Q 048174 240 ANDYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE----DSSVVKDNESKFHLQMTAKLLMCDPGELEDAL 315 (1303)
Q Consensus 240 ~~~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~----d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L 315 (1303)
+.+|..|+.||+.|||++++++.||+|||||||||||+|.+..+ +.+.+.+ .+.+..||.||||++++|.++|
T Consensus 241 ~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l 317 (692)
T cd01385 241 KHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEAL 317 (692)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999987542 4444444 4679999999999999999999
Q ss_pred hhceeeeCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCC---CceEEEeeeccccccCCC-CCHHH
Q 048174 316 CKRVMITPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPH---SKCLIGVLDIYGFESFES-NSFEQ 391 (1303)
Q Consensus 316 ~~~~~~~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~---~~~~IgiLDI~GFE~f~~-NsfEQ 391 (1303)
|++++.++||.++++++++||..+||+|||+||++||+|||++||.+|.+... ...+||||||||||+|+. |||||
T Consensus 318 ~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQ 397 (692)
T cd01385 318 TKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQ 397 (692)
T ss_pred ccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999986442 467999999999999999 99999
Q ss_pred HHHHhhhHHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHH
Q 048174 392 FCINFTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQT 471 (1303)
Q Consensus 392 lcINyaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~ 471 (1303)
|||||||||||++|+++||+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|++||++|++||++.
T Consensus 398 LcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~ 477 (692)
T cd01385 398 LCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQ 477 (692)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccCCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCccccc---------CC
Q 048174 472 FKDHKRFIKPKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETT---------KS 542 (1303)
Q Consensus 472 ~~~~~~f~~p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~---------~~ 542 (1303)
+++|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+..+.... +.
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (692)
T cd01385 478 HKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRA 557 (692)
T ss_pred hCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccC
Confidence 999999999987788999999999999999999999999999999999999999999999975432211 11
Q ss_pred CCccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHh
Q 048174 543 SKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDR 622 (1303)
Q Consensus 543 ~~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~R 622 (1303)
.+..||+++|+.||++||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|++|
T Consensus 558 ~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~r 637 (692)
T cd01385 558 MAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQ 637 (692)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHH
Confidence 23479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchhccccchHHHHHHHHHhcCCC--CcccccccceeccchhhHHHHHHH
Q 048174 623 FGILLPEIRKQNYDEKIACKWILEKMDLK--GYQIGKTKVFLKAGQMAELDAKRA 675 (1303)
Q Consensus 623 y~~L~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~LE~~R~ 675 (1303)
|++|+|... ...++.|+.||+.++++ +|+||+||||||++++..||....
T Consensus 638 Y~~L~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 638 YRILLPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred HHHhCcccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 999998643 23467799999998875 899999999999999999998654
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.7e-181 Score=1686.14 Aligned_cols=664 Identities=41% Similarity=0.711 Sum_probs=619.9
Q ss_pred CCCCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHH
Q 048174 3 SPAGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADA 82 (1303)
Q Consensus 3 ~~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~ 82 (1303)
+.+.+||||+.|++|||++||++|+.||.++.||||+|+||||||||+.+|++|++++|+.|+++..+++|||||+||+.
T Consensus 1 ~~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~ 80 (717)
T cd01382 1 DSKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADK 80 (717)
T ss_pred CCCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccce
Q 048174 83 AYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKF 162 (1303)
Q Consensus 83 Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~ 162 (1303)
||++|..+++||||||||||||||||++|+||+||+.+++.. ..|+++|+++||||||||||||++||||||||||
T Consensus 81 Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~ 156 (717)
T cd01382 81 AYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKF 156 (717)
T ss_pred HHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeE
Confidence 999999999999999999999999999999999999986532 5799999999999999999999999999999999
Q ss_pred EEEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCC-----------
Q 048174 163 VEIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSN----------- 230 (1303)
Q Consensus 163 i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~----------- 230 (1303)
++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||+++.
T Consensus 157 ~~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~ 236 (717)
T cd01382 157 VEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDK 236 (717)
T ss_pred EEEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999 688899999999999999999752
Q ss_pred ---------------cccccCCCCHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC--ccceecCccc
Q 048174 231 ---------------CYELVGVNDANDYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE--DSSVVKDNES 293 (1303)
Q Consensus 231 ---------------~~~~~~~dd~~~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~--d~~~~~~~~~ 293 (1303)
|...+++||+.+|..|+.||++|||+++++..||+|||||||||||+|.+.+. +.|.+.+ .+
T Consensus 237 ~~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~ 315 (717)
T cd01382 237 QILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QS 315 (717)
T ss_pred cccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CC
Confidence 22457899999999999999999999999999999999999999999987543 3344433 24
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhceee-----eCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCC
Q 048174 294 KFHLQMTAKLLMCDPGELEDALCKRVMI-----TPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPH 368 (1303)
Q Consensus 294 ~~~l~~~a~LLgv~~~~L~~~L~~~~~~-----~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~ 368 (1303)
...+..||.||||++++|.++||+|++. ++|+.+.++++++||..+||+|||+||++||+|||.+||.+|..+.
T Consensus 316 ~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~- 394 (717)
T cd01382 316 EQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET- 394 (717)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 5689999999999999999999999988 7889999999999999999999999999999999999999997643
Q ss_pred CceEEEeeeccccccCCCCCHHHHHHHhhhHHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccc
Q 048174 369 SKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIA 448 (1303)
Q Consensus 369 ~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~ 448 (1303)
...+||||||||||+|+.||||||||||||||||++|+++||+.||++|.+|||+|.+|+|.||++|||||+++|.|||+
T Consensus 395 ~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~ 474 (717)
T cd01382 395 SSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474 (717)
T ss_pred CCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCchHHHHHHHHHHhcCCCCcccCCCC----------CCCcEEEccCCCcchhhhhhhhhccchhHHHHHH
Q 048174 449 LLDEACMFPKSTHENFSQKLYQTFKDHKRFIKPKLT----------RSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQD 518 (1303)
Q Consensus 449 lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~~----------~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ 518 (1303)
+|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.+++++++
T Consensus 475 lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ 554 (717)
T cd01382 475 ILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLES 554 (717)
T ss_pred HhHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHH
Confidence 999999999999999999999999999988776532 2579999999999999999999999999999999
Q ss_pred HHhhchhhhhhccCCCCcccc---c--CCCCccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccc
Q 048174 519 LLSASECSFVSGLFPPISEET---T--KSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQ 593 (1303)
Q Consensus 519 ll~~S~~~~i~~lf~~~~~~~---~--~~~~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~Q 593 (1303)
+|++|+|+||+.||+...... . +..++.||+++||.||++||++|++|+||||||||||+.++|+.||..+|++|
T Consensus 555 ll~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~Q 634 (717)
T cd01382 555 LICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQ 634 (717)
T ss_pred HHHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHH
Confidence 999999999999998643211 1 12256799999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhccccchHHHHHHHHHhcCCC--CcccccccceeccchhhHHH
Q 048174 594 LRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQNYDEKIACKWILEKMDLK--GYQIGKTKVFLKAGQMAELD 671 (1303)
Q Consensus 594 Lr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~LE 671 (1303)
|||+||||+|||+|+|||+|++|.+|++||+.|++.... ..+++..|+.||+.++++ +|+||+||||||+++++.||
T Consensus 635 Lr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le 713 (717)
T cd01382 635 LQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFD 713 (717)
T ss_pred HHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHH
Confidence 999999999999999999999999999999999886543 357899999999998874 89999999999999999999
Q ss_pred HH
Q 048174 672 AK 673 (1303)
Q Consensus 672 ~~ 673 (1303)
++
T Consensus 714 ~~ 715 (717)
T cd01382 714 QI 715 (717)
T ss_pred HH
Confidence 86
No 14
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.2e-180 Score=1638.23 Aligned_cols=753 Identities=58% Similarity=0.945 Sum_probs=716.7
Q ss_pred CCCCCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHH
Q 048174 2 VSPAGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIAD 81 (1303)
Q Consensus 2 ~~~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~ 81 (1303)
+.|+.|+|||+.|+|||||+||+||+.||..+.||||.|.+|||||||+.+|++|+.++|..|+ ...+++.||+||||+
T Consensus 4 ~~~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~ 82 (862)
T KOG0160|consen 4 NPPPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAE 82 (862)
T ss_pred CCCCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHH
Confidence 3445699999999999999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred HHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccc
Q 048174 82 AAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGK 161 (1303)
Q Consensus 82 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK 161 (1303)
.||+.|...+.||+||||||||||||+++|++|+||+++++. ..+.+||++|+++||||||||||||++|||||||||
T Consensus 83 ~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK 160 (862)
T KOG0160|consen 83 EAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGK 160 (862)
T ss_pred HHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhh
Confidence 999999999999999999999999999999999999999876 446799999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeecccCChhhHhhcCCCCCCCCccccCCCcccccCCCCHH
Q 048174 162 FVEIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCAAPPDEIERYKLGNPTSFHYLNQSNCYELVGVNDAN 241 (1303)
Q Consensus 162 ~i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~ 241 (1303)
|++|+||..|+|.||.|+|||||||||+.++++|||||||||+|++.++++++|.|+++..|+|++|++|..++++||+.
T Consensus 161 ~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 161 VIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999955599999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC-ccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhcee
Q 048174 242 DYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE-DSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVM 320 (1303)
Q Consensus 242 ~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~-d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~ 320 (1303)
+|..++.||..+||+.++|..||++||||||||||+|..+.+ +.+...++ ++..+|.|||++.+.|..+|+.|.+
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i 316 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKI 316 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998777 33333332 6899999999999999999999999
Q ss_pred eeCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-CCCCceEEEeeeccccccCCCCCHHHHHHHhhhH
Q 048174 321 ITPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQ-DPHSKCLIGVLDIYGFESFESNSFEQFCINFTNE 399 (1303)
Q Consensus 321 ~~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNE 399 (1303)
.++++.|+++++..+|...||++||.||++||+|+|+.||.+|+. ++....+||||||||||.|++|||||||||||||
T Consensus 317 ~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanE 396 (862)
T KOG0160|consen 317 LTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANE 396 (862)
T ss_pred hcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHH
Confidence 999999999999999999999999999999999999999999997 4445789999999999999999999999999999
Q ss_pred HHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCcc
Q 048174 400 KLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFI 479 (1303)
Q Consensus 400 kLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~ 479 (1303)
+|||+||+|||+.||++|.+|||+|+.|+|.||++|+++|++ |.||++||||+|++|.++|++|..||+..+.+|+.|.
T Consensus 397 kLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~ 475 (862)
T KOG0160|consen 397 KLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFT 475 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccC
Confidence 999999999999999999999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHhhHhhHHHH
Q 048174 480 KPKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSRFKLQLQQL 559 (1303)
Q Consensus 480 ~p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~fk~sL~~L 559 (1303)
+|+.++..|+|.||||+|+|++.|||+||+|.|++++++++..|+++|+..+|+....++.+.++++||+++|+.+|..|
T Consensus 476 kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~L 555 (862)
T KOG0160|consen 476 KPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISL 555 (862)
T ss_pred CCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976666555668899999999999999
Q ss_pred HHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhccccchHH
Q 048174 560 MDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQNYDEKI 639 (1303)
Q Consensus 560 m~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~~~~~~~ 639 (1303)
|++|++|.||||||||||+.+.|+.||..+|++|||||||||+|||+++|||.|++|.||+.||++|+| .. ...|+..
T Consensus 556 m~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~-~~~~~~~ 633 (862)
T KOG0160|consen 556 METLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-ND-SASDDLS 633 (862)
T ss_pred HHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-ch-hcccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 32 3345589
Q ss_pred HHHHHHHhcCCCCcccccccceeccchhhHHHHHHHhhhchhHHHHhhhhhhhhhhhhhhhhhhHHHHHHhhccccceec
Q 048174 640 ACKWILEKMDLKGYQIGKTKVFLKAGQMAELDAKRAKLLGHSAEVIQSQHRRRVTQKHYITLVQAAVCIQSSCRGILARR 719 (1303)
Q Consensus 640 ~~~~il~~~~~~~~~iGkTkVFlr~~~~~~LE~~R~~~l~~aA~~IQ~~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk 719 (1303)
.|+.||+.++++.|++|+|||||++|+++.||..|..++..+++.||+.+|+|+.|++|..+|.+++.||+.+||+++|+
T Consensus 634 ~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 634 LCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 720 YCKVKKKEAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQAWLRARAAVRAMAALS 773 (1303)
Q Consensus 720 ~~~~~r~~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~~~~R~~~arr 773 (1303)
..+ +..||+.||+.||+|..|++|...+.+++.+|+ ..|++.+|+
T Consensus 714 --~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs------~~r~~~~r~ 758 (862)
T KOG0160|consen 714 --ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS------GVRAMLARN 758 (862)
T ss_pred --hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhcc
Confidence 344 678999999999999999999999999999998 666666554
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=7e-179 Score=1645.12 Aligned_cols=638 Identities=38% Similarity=0.685 Sum_probs=601.3
Q ss_pred CCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHH
Q 048174 7 GADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYRE 86 (1303)
Q Consensus 7 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 86 (1303)
.+|||+.|++|||++||++|+.||..+.||||+|+||||||||+.+| +|++++++.|+++...++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEEE
Q 048174 87 MINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQ 166 (1303)
Q Consensus 87 m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l~ 166 (1303)
|...++||||||||||||||||++|+||+||+.+++.. ..+|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred EcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhH-hhcCCCCCCCCccccCCCcccccCCCC----H
Q 048174 167 FDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEI-ERYKLGNPTSFHYLNQSNCYELVGVND----A 240 (1303)
Q Consensus 167 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~-~~l~L~~~~~~~yl~~~~~~~~~~~dd----~ 240 (1303)
|+.+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++ +.|+|.++..|+||++++|..+++++| +
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 454554 789999999999999998877777654 6
Q ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC----ccceecCcccHHHHHHHHHhcCCCHHHHHHHHh
Q 048174 241 NDYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE----DSSVVKDNESKFHLQMTAKLLMCDPGELEDALC 316 (1303)
Q Consensus 241 ~~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~----d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~ 316 (1303)
++|..|+.||.+|||+++++..||+|||||||||||+|.+.+. +.+.+. +...+..||+||||+.++|.++||
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~---~~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVS---NVAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999987543 233343 346799999999999999999999
Q ss_pred hceeeeCCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCC-----CceEEEeeeccccccCCCCCHHH
Q 048174 317 KRVMITPEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPH-----SKCLIGVLDIYGFESFESNSFEQ 391 (1303)
Q Consensus 317 ~~~~~~~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDI~GFE~f~~NsfEQ 391 (1303)
++++.++|+.+++++++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986542 35799999999999999999999
Q ss_pred HHHHhhhHHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHH
Q 048174 392 FCINFTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQT 471 (1303)
Q Consensus 392 lcINyaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~ 471 (1303)
|||||||||||++|+++||+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|+|||++|++|++..
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCcccCCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHh
Q 048174 472 FKDHKRFIKPKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSR 551 (1303)
Q Consensus 472 ~~~~~~f~~p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~ 551 (1303)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| .||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 5678889887889999999999999999999999999999999999887 479999
Q ss_pred hHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchh
Q 048174 552 FKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIR 631 (1303)
Q Consensus 552 fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~ 631 (1303)
||.||++||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccchHHHHHHHHHhcCCCCcccccccceeccchhhHHHHHH
Q 048174 632 KQNYDEKIACKWILEKMDLKGYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 632 ~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
....+.++.|+.||..+++++|+||+||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999864
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=5e-178 Score=1655.87 Aligned_cols=668 Identities=53% Similarity=0.876 Sum_probs=631.3
Q ss_pred CCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHH
Q 048174 5 AGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAY 84 (1303)
Q Consensus 5 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay 84 (1303)
..++|||+.|++|||++||++|+.||..++||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||++||
T Consensus 5 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 83 (677)
T smart00242 5 FEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAY 83 (677)
T ss_pred cCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEE
Q 048174 85 REMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVE 164 (1303)
Q Consensus 85 ~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~ 164 (1303)
+.|..+++||||||||||||||||++|+||+||+.++++.. ...+|+++|+++||||||||||||++|+||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~ 162 (677)
T smart00242 84 RNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIE 162 (677)
T ss_pred HHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEE
Confidence 99999999999999999999999999999999999986532 34579999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHH
Q 048174 165 IQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDY 243 (1303)
Q Consensus 165 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 243 (1303)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|
T Consensus 163 l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f 242 (677)
T smart00242 163 IHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEF 242 (677)
T ss_pred EEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 6789999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q 048174 244 LATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITP 323 (1303)
Q Consensus 244 ~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 323 (1303)
..|+.||+.|||+++++.+||+|||||||||||+|...+++.+... ..+...++.||.||||++++|.++|+++++.++
T Consensus 243 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~-~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 321 (677)
T smart00242 243 KETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAAST-VKDKEELENAAELLGVDPEELEKALTKRKIKTG 321 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccc-cCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 9999999999999999999999999999999999987765332211 224467999999999999999999999999999
Q ss_pred CceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHHhhhHHHHh
Q 048174 324 EEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQQ 403 (1303)
Q Consensus 324 ~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~ 403 (1303)
+|.+++++++++|..+||+|||+||++||+|||.+||.+|.+......+||||||||||+|+.||||||||||||||||+
T Consensus 322 ~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~ 401 (677)
T smart00242 322 GEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQ 401 (677)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHHHH
Confidence 99999999999999999999999999999999999999999876778999999999999999999999999999999999
Q ss_pred HHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCcccCC-
Q 048174 404 HFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFIKPK- 482 (1303)
Q Consensus 404 ~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~- 482 (1303)
+|++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|++||++|++||.+.+++|+.|.+|+
T Consensus 402 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~~~ 481 (677)
T smart00242 402 FFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKPRK 481 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHhhHhhHHHHHHH
Q 048174 483 LTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSRFKLQLQQLMDT 562 (1303)
Q Consensus 483 ~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~ 562 (1303)
.....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.......+..+..||+++|+.||+.||++
T Consensus 482 ~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~~~ 561 (677)
T smart00242 482 KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLMDT 561 (677)
T ss_pred CCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999865443334446789999999999999999
Q ss_pred HccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhcc-ccchHHHH
Q 048174 563 LNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQ-NYDEKIAC 641 (1303)
Q Consensus 563 L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~-~~~~~~~~ 641 (1303)
|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..+.. ..+++++|
T Consensus 562 l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~ 641 (677)
T smart00242 562 LNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEAC 641 (677)
T ss_pred HhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875432 34689999
Q ss_pred HHHHHhcCC--CCcccccccceeccchhhHHHHHHH
Q 048174 642 KWILEKMDL--KGYQIGKTKVFLKAGQMAELDAKRA 675 (1303)
Q Consensus 642 ~~il~~~~~--~~~~iGkTkVFlr~~~~~~LE~~R~ 675 (1303)
+.||..+++ .+|+||+||||||++++..||++|.
T Consensus 642 ~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 642 EALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 999999875 5899999999999999999999873
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.2e-179 Score=1531.17 Aligned_cols=695 Identities=40% Similarity=0.680 Sum_probs=651.6
Q ss_pred CCCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHH
Q 048174 4 PAGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAA 83 (1303)
Q Consensus 4 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~A 83 (1303)
...|||||+.|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|+|+...+.||||||+|+++
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 46799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceE
Q 048174 84 YREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFV 163 (1303)
Q Consensus 84 y~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i 163 (1303)
|++|...++|||||||||||||||+++|.||+|++.+|++ +.+...|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~-g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGG-GEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccC-CcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 9999999999999999999999999999999999999843 455678889999999999999999999999999999999
Q ss_pred EEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHH
Q 048174 164 EIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDAND 242 (1303)
Q Consensus 164 ~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~ 242 (1303)
||+|+..|..+|++|.+|||||||||.|.++||||||||||+. |+.+.|..||+..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 888999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 048174 243 YLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMIT 322 (1303)
Q Consensus 243 f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~ 322 (1303)
|++|..||+++||.+++|+.||++||+|||||||.|.+.++ -+.+.+. ..++-.|.|||||...|++.||.|.|.+
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~~-~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~s 329 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEGN-YAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIMES 329 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeCC-cceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998544 3344443 3689999999999999999999998875
Q ss_pred C----CceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCC-CCceEEEeeeccccccCCCCCHHHHHHHhh
Q 048174 323 P----EEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDP-HSKCLIGVLDIYGFESFESNSFEQFCINFT 397 (1303)
Q Consensus 323 ~----~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQlcINya 397 (1303)
. .+++.++|+++||.+.||||||+||.+||||||++||.+|.... ....+||||||||||+|+.||||||||||.
T Consensus 330 ~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfV 409 (1106)
T KOG0162|consen 330 KWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFV 409 (1106)
T ss_pred cccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHH
Confidence 3 48899999999999999999999999999999999999997433 356899999999999999999999999999
Q ss_pred hHHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhc-CCCcccccchhhhcCC----CCchHHHHHHHHHHh
Q 048174 398 NEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHENFSQKLYQTF 472 (1303)
Q Consensus 398 NEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~-~p~Gil~lLdee~~~p----~~td~~f~~kl~~~~ 472 (1303)
||||||.|++-+++.|||||.+|||.|.+|.|.||.-|+||||. +|.||+++|||.|.-. .|.|++|+++|...+
T Consensus 410 NEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~ 489 (1106)
T KOG0162|consen 410 NEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLF 489 (1106)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996 5779999999999753 467999999999999
Q ss_pred cCCCCcccCCCCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcccccCCCCccchhHhh
Q 048174 473 KDHKRFIKPKLTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETTKSSKFSSIGSRF 552 (1303)
Q Consensus 473 ~~~~~f~~p~~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f 552 (1303)
+.||+|.. ....|+|+||||+|+||++||.+||||.|..|++.||+.|+++|++.||+..... .+..+.+|.|++.
T Consensus 490 ~s~phF~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~-dskrRP~Tag~kI 565 (1106)
T KOG0162|consen 490 GSHPHFES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDA-DSKRRPPTAGDKI 565 (1106)
T ss_pred cCCCcccc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcc-cccCCCCCchhhH
Confidence 99999974 3478999999999999999999999999999999999999999999999975433 2334678999999
Q ss_pred HhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhc
Q 048174 553 KLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRK 632 (1303)
Q Consensus 553 k~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~ 632 (1303)
+.|-++|+++|.+|.||||||||||+.|.|+.||...|++|+.|+|+-|.|||+|+||.+|..|+.|++||.+|.|+.+.
T Consensus 566 kkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~ 645 (1106)
T KOG0162|consen 566 KKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWP 645 (1106)
T ss_pred HhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred -cccchHHHHHHHHHhcCC--CCcccccccceeccc-hhhHHHHHHHhhhchhHHHHhhhhhhhhhhhhhhhhhhHHHHH
Q 048174 633 -QNYDEKIACKWILEKMDL--KGYQIGKTKVFLKAG-QMAELDAKRAKLLGHSAEVIQSQHRRRVTQKHYITLVQAAVCI 708 (1303)
Q Consensus 633 -~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~LE~~R~~~l~~aA~~IQ~~~R~~~~Rk~y~~~r~aai~I 708 (1303)
+..|++.+|+.||....+ ++||+|.||||++.. .+..||.+|.......|.+||+.||+|++|++|.++|.-+..|
T Consensus 646 twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 646 TWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATKL 725 (1106)
T ss_pred ccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999998776 489999999999985 5788999999999999999999999999999999998755543
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.4e-176 Score=1645.76 Aligned_cols=664 Identities=49% Similarity=0.828 Sum_probs=621.7
Q ss_pred CCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHH
Q 048174 7 GADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYRE 86 (1303)
Q Consensus 7 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 86 (1303)
++|||+.|++|||++||++|+.||.++.||||+|+||||||||+.+| +|++++++.|+++...++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEEE
Q 048174 87 MINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQ 166 (1303)
Q Consensus 87 m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l~ 166 (1303)
|+.+++||||||||||||||||++|+||+||+.+++.. ...++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 356999999999999999999999999999999999999
Q ss_pred EcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHHH
Q 048174 167 FDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYLA 245 (1303)
Q Consensus 167 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 245 (1303)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 688999999999999999999999988899999999999
Q ss_pred HHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeCCc
Q 048174 246 TRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITPEE 325 (1303)
Q Consensus 246 ~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e 325 (1303)
++.||+.|||+++++.+||+|||||||||||+|...+++.+......+...++.||.||||+.++|.++||++++.++|+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~ 316 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGE 316 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCc
Confidence 99999999999999999999999999999999987765332112223456899999999999999999999999999999
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCCCCHHHHHHHhhhHHHHhHH
Q 048174 326 IIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQQHF 405 (1303)
Q Consensus 326 ~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~~f 405 (1303)
.+++++++++|..+||+|||+||++||+|||.+||.+|.+......+||||||||||+|+.||||||||||||||||++|
T Consensus 317 ~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f 396 (679)
T cd00124 317 VITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFF 396 (679)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999887667789999999999999999999999999999999999
Q ss_pred hHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccc-CCCC
Q 048174 406 NQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFIK-PKLT 484 (1303)
Q Consensus 406 ~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~-p~~~ 484 (1303)
++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|+++|++|++||.+.+++|+.|.. ++..
T Consensus 397 ~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~ 476 (679)
T cd00124 397 NQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNA 476 (679)
T ss_pred HHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998644 3455
Q ss_pred CCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCccc-----------ccCCCCccchhHhhH
Q 048174 485 RSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEE-----------TTKSSKFSSIGSRFK 553 (1303)
Q Consensus 485 ~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~-----------~~~~~~~~tv~~~fk 553 (1303)
...|+|+||||+|+|+++||++||+|.++++++++|+.|+|+||+.||+..... ..+..+..||+++|+
T Consensus 477 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~ 556 (679)
T cd00124 477 PTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFR 556 (679)
T ss_pred CCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHH
Confidence 679999999999999999999999999999999999999999999999763211 112236689999999
Q ss_pred hhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhcc
Q 048174 554 LQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQ 633 (1303)
Q Consensus 554 ~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~ 633 (1303)
.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.....
T Consensus 557 ~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~ 636 (679)
T cd00124 557 TSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEK 636 (679)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred ccchHHHHHHHHHhcCC--CCcccccccceeccchhhHHHHHH
Q 048174 634 NYDEKIACKWILEKMDL--KGYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 634 ~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
.......|+.||..+++ ++|+||+||||||++++..||.+|
T Consensus 637 ~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 637 VSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred cCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 33334449999998876 489999999999999999999764
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.7e-174 Score=1491.02 Aligned_cols=741 Identities=39% Similarity=0.669 Sum_probs=671.1
Q ss_pred CCCCCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHH
Q 048174 2 VSPAGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIAD 81 (1303)
Q Consensus 2 ~~~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~ 81 (1303)
++++..|||.|.|-||||+++|+|++.||.+|.||||+.+||||||||+.++.+|+++.+..|+|+.+|.+||||||||+
T Consensus 53 eD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIAD 132 (1259)
T KOG0163|consen 53 EDSPKDVEDNCELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIAD 132 (1259)
T ss_pred cccccccccccceeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeech
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccc
Q 048174 82 AAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGK 161 (1303)
Q Consensus 82 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK 161 (1303)
.|||.|...+.+|||||||||||||||++|.+++||+.--++ +..|+++|+++||||||||||||+||+|||||||
T Consensus 133 Ka~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGK 208 (1259)
T KOG0163|consen 133 KAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGK 208 (1259)
T ss_pred HHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccc
Confidence 999999999999999999999999999999999999986554 3589999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCc---------
Q 048174 162 FVEIQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNC--------- 231 (1303)
Q Consensus 162 ~i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~--------- 231 (1303)
|++|||+.+|.++|+-|.+||||||||+.|+.+|||||||||||+ ++++.++.|.|+.|.+|+||+.|-.
T Consensus 209 FveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~ 288 (1259)
T KOG0163|consen 209 FVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTE 288 (1259)
T ss_pred eEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchh
Confidence 999999999999999999999999999999999999999999999 8899999999999999999975410
Q ss_pred -----------------ccccCCCCHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC---ccceecCc
Q 048174 232 -----------------YELVGVNDANDYLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE---DSSVVKDN 291 (1303)
Q Consensus 232 -----------------~~~~~~dd~~~f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~---d~~~~~~~ 291 (1303)
..-+-+||..+|..+..||+.+|++++|...||+++|||||||||+|++..+ .+|.+.+.
T Consensus 289 ~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~ 368 (1259)
T KOG0163|consen 289 QKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNG 368 (1259)
T ss_pred hcCcccccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccC
Confidence 1112368999999999999999999999999999999999999999998775 45667654
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHhhceeee-----CCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcC
Q 048174 292 ESKFHLQMTAKLLMCDPGELEDALCKRVMIT-----PEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQD 366 (1303)
Q Consensus 292 ~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~-----~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~ 366 (1303)
+...|..+|+|||+|.++|...||.|+|.+ +|..|.+||.+.+|..+||||||++|++||||||.+||.++--
T Consensus 369 -seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPF- 446 (1259)
T KOG0163|consen 369 -SEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPF- 446 (1259)
T ss_pred -chhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccc-
Confidence 556899999999999999999999999864 3467899999999999999999999999999999999999953
Q ss_pred CCCceEEEeeeccccccCCCCCHHHHHHHhhhHHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcc
Q 048174 367 PHSKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGI 446 (1303)
Q Consensus 367 ~~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gi 446 (1303)
..+..|||||||.|||-|.+||||||||||+|||||+|||+.|++.||+.|.+||++...|.|.||++||+|||.|..||
T Consensus 447 e~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~Gi 526 (1259)
T KOG0163|consen 447 EKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGI 526 (1259)
T ss_pred ccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccch
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCchHHHHHHHHHHhcCCCCcccCCCC----------CCCcEEEccCCCcchhhhhhhhhccchhHHHH
Q 048174 447 IALLDEACMFPKSTHENFSQKLYQTFKDHKRFIKPKLT----------RSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEH 516 (1303)
Q Consensus 447 l~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~~----------~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~ 516 (1303)
|.|||||..+|+.++..|....++.+++|=+..-|+.+ ...|.|+||||.|+|.+..|+|||.|.|...+
T Consensus 527 fdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SL 606 (1259)
T KOG0163|consen 527 FDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSL 606 (1259)
T ss_pred hhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHH
Confidence 99999999999999999999999999988777777532 24799999999999999999999999999999
Q ss_pred HHHHhhchhhhhhccCCCCccccc--CCC--CccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCcccccc
Q 048174 517 QDLLSASECSFVSGLFPPISEETT--KSS--KFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQ 592 (1303)
Q Consensus 517 ~~ll~~S~~~~i~~lf~~~~~~~~--~~~--~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~ 592 (1303)
..|+..|+++||..||++....+. ..+ ++-|||++||.||..||+.|.+|..|||||||||..+.++.||...++.
T Consensus 607 e~Li~es~~~ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLs 686 (1259)
T KOG0163|consen 607 EGLIEESDNPLLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILS 686 (1259)
T ss_pred HHHHHhccchHHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHH
Confidence 999999999999999987533222 112 6789999999999999999999999999999999999999999999999
Q ss_pred ceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhccccchHHHHHHHHHhcCCC--CcccccccceeccchhhHH
Q 048174 593 QLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQNYDEKIACKWILEKMDLK--GYQIGKTKVFLKAGQMAEL 670 (1303)
Q Consensus 593 QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~L 670 (1303)
||+|+|++..++++..|||+|..|.|.+.-|+-.+|..+. ..|++..|+.+...+|++ +|+||.|||||++|.++.+
T Consensus 687 QLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEF 765 (1259)
T KOG0163|consen 687 QLQCSGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEF 765 (1259)
T ss_pred HhhhccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHH
Confidence 9999999999999999999999999999999988887554 578999999999999986 8999999999999999999
Q ss_pred HHHHHhhhchhHHHHhhhhhhhhhhhhhhhhhhHHHHHHhhccccceeccccccchhhhHHHHHHHHHHHHHHHhhcchh
Q 048174 671 DAKRAKLLGHSAEVIQSQHRRRVTQKHYITLVQAAVCIQSSCRGILARRYCKVKKKEAAAVKIQKNSRTMMTRKAYSNVK 750 (1303)
Q Consensus 671 E~~R~~~l~~aA~~IQ~~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~aRr~~~k~r 750 (1303)
+++....-...+..|+ .+..|+.+.+|.+..-++..+-.. .-+-..+..+++++|++.|||++|+++....
T Consensus 766 DqiMksDPe~m~~lv~-kVn~WLv~sRWkk~q~~a~sVIKL--------kNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 766 DQIMKSDPETMLELVA-KVNKWLVRSRWKKSQYGALSVIKL--------KNKIIYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHhcCHHHHHHHHH-HHHHHHHHhHHHHhhhhhhheeeh--------hhHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 9987777666655555 467899999987776555433221 0011224567889999999999999998876
Q ss_pred HHHHHHHH
Q 048174 751 AAAIVLQA 758 (1303)
Q Consensus 751 ~aai~IQ~ 758 (1303)
....++-+
T Consensus 837 ~~~~K~~~ 844 (1259)
T KOG0163|consen 837 AGIRKINA 844 (1259)
T ss_pred HHHHHHHH
Confidence 65555544
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=4.4e-175 Score=1629.97 Aligned_cols=660 Identities=32% Similarity=0.494 Sum_probs=590.7
Q ss_pred CCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHHH
Q 048174 8 ADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYREM 87 (1303)
Q Consensus 8 ~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 87 (1303)
||||+.|++|||++||++|+.||.++.||||+|+||||||||+.+| +|++++++.|+++...++|||||+||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEEEE
Q 048174 88 INEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQF 167 (1303)
Q Consensus 88 ~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l~f 167 (1303)
..+++||||||||||||||||++|+||+|||.+++.... ....++|+++||||||||||||++||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~--~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG--RVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc--ccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999764321 122357999999999999999999999999999999999
Q ss_pred cCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCC-cccccCCCCHHHHHH
Q 048174 168 DKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSN-CYELVGVNDANDYLA 245 (1303)
Q Consensus 168 ~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~-~~~~~~~dd~~~f~~ 245 (1303)
|.+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++..+.+++.+. +...+++||+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 688999999998765443333322 233577899999999
Q ss_pred HHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeCCc
Q 048174 246 TRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITPEE 325 (1303)
Q Consensus 246 ~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e 325 (1303)
|+.||++|||+++++..||+|||||||||||+|....+ .+.+.+ .+.++.||.||||+.++|.++|+++++.++++
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~~-~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~ 314 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVAG-RKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGIN 314 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecCC-ccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecce
Confidence 99999999999999999999999999999999986332 233333 35799999999999999999999887765543
Q ss_pred -------------eeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEeeeccccccCCC------
Q 048174 326 -------------IIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPHSKCLIGVLDIYGFESFES------ 386 (1303)
Q Consensus 326 -------------~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~------ 386 (1303)
.+..++++.+|.++||||||+||++||+|||.+||.+|.+......+||||||||||+|+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~ 394 (767)
T cd01386 315 QMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRA 394 (767)
T ss_pred eeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCC
Confidence 3345678999999999999999999999999999999998766678999999999999984
Q ss_pred CCHHHHHHHhhhHHHHhHHhHhhHHhhHhhhhccCCCcccccc-cChHHHHHhhhcCC--------------Ccccccch
Q 048174 387 NSFEQFCINFTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHF-VDNQDVLDLIEKKP--------------GGIIALLD 451 (1303)
Q Consensus 387 NsfEQlcINyaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~-~dn~~~ldlie~~p--------------~Gil~lLd 451 (1303)
|||||||||||||||||+|+++||+.||++|.+|||+|.++.+ .||++|||||+++| .|||++||
T Consensus 395 NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLD 474 (767)
T cd01386 395 ATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLD 474 (767)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhh
Confidence 8999999999999999999999999999999999999987655 79999999999865 49999999
Q ss_pred hhhcCCCCchHHHHHHHHHHhcCCCCcccCC------CCCCCcEEEccCCC--cchhhhhhhhhccchh-HHHHHHHHhh
Q 048174 452 EACMFPKSTHENFSQKLYQTFKDHKRFIKPK------LTRSDFTIVHYAGE--VHYQSDLFLDKNKDYV-VAEHQDLLSA 522 (1303)
Q Consensus 452 ee~~~p~~td~~f~~kl~~~~~~~~~f~~p~------~~~~~F~I~HyaG~--V~Y~~~gflekN~D~l-~~~~~~ll~~ 522 (1303)
|||++|++||++|++||++.+++|++|.++. .....|+|+||||. |+|+++||++||||.+ ..+++.+|++
T Consensus 475 Eec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~ 554 (767)
T cd01386 475 EEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQD 554 (767)
T ss_pred HhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHh
Confidence 9999999999999999999999998887622 12468999999995 9999999999999976 6899999999
Q ss_pred chhhhhhccCCCCcc-------------cc-----c-----C--------CCCccchhHhhHhhHHHHHHHHccCCCeeE
Q 048174 523 SECSFVSGLFPPISE-------------ET-----T-----K--------SSKFSSIGSRFKLQLQQLMDTLNSTEPHYI 571 (1303)
Q Consensus 523 S~~~~i~~lf~~~~~-------------~~-----~-----~--------~~~~~tv~~~fk~sL~~Lm~~L~~t~~hfI 571 (1303)
|++++|+.||+.... .. . + ..+..||+++||.||+.||++|++|+||||
T Consensus 555 S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfI 634 (767)
T cd01386 555 SKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFV 634 (767)
T ss_pred CCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeE
Confidence 999999999953210 00 0 0 013458999999999999999999999999
Q ss_pred EecCCCCCCC----------------------CCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcccccc
Q 048174 572 RCVKPNNELK----------------------PVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPE 629 (1303)
Q Consensus 572 rCIkPN~~~~----------------------p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~ 629 (1303)
||||||+.|+ |+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|++.
T Consensus 635 RCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~ 714 (767)
T cd01386 635 HCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEG 714 (767)
T ss_pred EEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChh
Confidence 9999999874 789999999999999999999999999999999999999999999886
Q ss_pred hhc------cccchHHHHHHHHHhcCCC--CcccccccceeccchhhHHHHHH
Q 048174 630 IRK------QNYDEKIACKWILEKMDLK--GYQIGKTKVFLKAGQMAELDAKR 674 (1303)
Q Consensus 630 ~~~------~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~LE~~R 674 (1303)
.+. ...|++++|+.||..++++ +|+||+||||||.+++..||..|
T Consensus 715 ~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 715 LTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 432 1358899999999998764 89999999999999999999865
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=9e-169 Score=1595.33 Aligned_cols=652 Identities=49% Similarity=0.859 Sum_probs=578.6
Q ss_pred CCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHHH
Q 048174 8 ADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYREM 87 (1303)
Q Consensus 8 ~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 87 (1303)
||||+.|++|||++||++|+.||..+.||||+|++|||||||+++| +|++++++.|+++...++|||||+||++||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 7999999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCC-cCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEEE
Q 048174 88 INEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTA-AEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQ 166 (1303)
Q Consensus 88 ~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~-~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l~ 166 (1303)
+++++||||||||||||||||++|+||+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23468999999999999999999999999999999999999
Q ss_pred EcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHHH
Q 048174 167 FDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYLA 245 (1303)
Q Consensus 167 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 245 (1303)
||.+|.++||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||+++++..+++.||+.+|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999998 778899999999999999999999999999999999999
Q ss_pred HHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCC-ccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 048174 246 TRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEE-DSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMITPE 324 (1303)
Q Consensus 246 ~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~-d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 324 (1303)
++.||++|||+++++.+||+|||||||||||+|....+ +.+.+.+. ..++.||.||||++++|.++||++++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998875 44555554 459999999999999999999999999999
Q ss_pred ceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCC-CCceEEEeeeccccccCCCCCHHHHHHHhhhHHHHh
Q 048174 325 EIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDP-HSKCLIGVLDIYGFESFESNSFEQFCINFTNEKLQQ 403 (1303)
Q Consensus 325 e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~ 403 (1303)
|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999766 567899999999999999999999999999999999
Q ss_pred HHhHhhHHhhHhhhhccCCCcccccc-cChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHh-cCCCCcccC
Q 048174 404 HFNQNVFKMEQNDYRNEEIDWSYVHF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTF-KDHKRFIKP 481 (1303)
Q Consensus 404 ~f~~~vf~~eq~ey~~EgI~w~~i~~-~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~p 481 (1303)
+|++++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||++|+++|++|+++|...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999988
Q ss_pred C----CCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCcc--------------------
Q 048174 482 K----LTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISE-------------------- 537 (1303)
Q Consensus 482 ~----~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~-------------------- 537 (1303)
+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|+|+||+.||.....
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 5 3678999999999999999999999999999999999999999999999976431
Q ss_pred -cccCCCCccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCH
Q 048174 538 -ETTKSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTF 616 (1303)
Q Consensus 538 -~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~ 616 (1303)
......+..||+++|+.||++||++|++|+||||||||||+.+.|+.||..+|++||+|+||+|+++|++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 0001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchhcc----ccchHHHHHHHHHhcCC--CCcccccccceec
Q 048174 617 SEFLDRFGILLPEIRKQ----NYDEKIACKWILEKMDL--KGYQIGKTKVFLK 663 (1303)
Q Consensus 617 ~eF~~Ry~~L~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr 663 (1303)
.+|++||++|++..... ..+++++|+.||+.+++ ..|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999976532 46889999999999988 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=3.7e-116 Score=1099.60 Aligned_cols=810 Identities=34% Similarity=0.501 Sum_probs=674.8
Q ss_pred CCCCCCccCCCCCChHHHHHHHHHHhhcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHH
Q 048174 5 AGGADDMTKLSYLHEPGVLHNLATRYEINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAY 84 (1303)
Q Consensus 5 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay 84 (1303)
..+++||+.|.+++|+.++.||..||..+.||||+|+||++||||+.++.+|.+..+..|.++..+++|||||++|+.||
T Consensus 60 ~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y 139 (1062)
T KOG4229|consen 60 VEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAY 139 (1062)
T ss_pred cccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHH
Confidence 45799999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEE
Q 048174 85 REMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVE 164 (1303)
Q Consensus 85 ~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~ 164 (1303)
++|++...||||+||||||||||++|+++++||+.++. +....++++|+.+||+|||||||+|.+|||||||||||+
T Consensus 140 ~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~ 216 (1062)
T KOG4229|consen 140 QDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIK 216 (1062)
T ss_pred HhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEE
Confidence 99999999999999999999999999999999999984 123578899999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEEeeeeecccceeecCCCCCceeeeeeccc-CChhhHhhcCCCCCCCCccccCCCcccc-cCCCCHHH
Q 048174 165 IQFDKRGRISGAAIRTYLLERSRVCKISDPERNYHCFYLLCA-APPDEIERYKLGNPTSFHYLNQSNCYEL-VGVNDAND 242 (1303)
Q Consensus 165 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERNfHIFYqll~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~-~~~dd~~~ 242 (1303)
+.|..+|.|.||+|.-||||||||+.|+.+||||||||++++ .+.+++..+.|+.+++|.||+++.+..+ ++.++..+
T Consensus 217 ~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~ 296 (1062)
T KOG4229|consen 217 VNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQ 296 (1062)
T ss_pred eccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHh
Confidence 999999999999999999999999999999999999999999 6668889999999999999999999998 99999999
Q ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCeeeeecCCccceecCcccHHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 048174 243 YLATRRAMDVIGISRKEQDAIFGVVAAILHLGNIEFEKGEEDSSVVKDNESKFHLQMTAKLLMCDPGELEDALCKRVMIT 322 (1303)
Q Consensus 243 f~~~~~Al~~lG~~~~~~~~I~~ilaaILhLGni~F~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~ 322 (1303)
|..+..||..+||..+++..||++++||||+|||.|.....+.....+..+...+..+|.||.++++.|.+++|.++..+
T Consensus 297 ~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~ 376 (1062)
T KOG4229|consen 297 FIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVT 376 (1062)
T ss_pred HHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccceee
Confidence 99999999999999999999999999999999999986554322222223345799999999999999999999999999
Q ss_pred CCceeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCC--CceEEEeeeccccccCCCCCHHHHHHHhhhHH
Q 048174 323 PEEIIKKSLDPVAATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPH--SKCLIGVLDIYGFESFESNSFEQFCINFTNEK 400 (1303)
Q Consensus 323 ~~e~i~~~l~~~~A~~~Rdalak~LY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDI~GFE~f~~NsfEQlcINyaNEk 400 (1303)
+||.+..+++.++|.++||++||+||++||.|||.+||..+.++.. +...||||||||||+|+.|||||||||||||+
T Consensus 377 ~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~ 456 (1062)
T KOG4229|consen 377 RGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQ 456 (1062)
T ss_pred ehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654 36899999999999999999999999999999
Q ss_pred HHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccc
Q 048174 401 LQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHENFSQKLYQTFKDHKRFIK 480 (1303)
Q Consensus 401 Lq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~ 480 (1303)
||++|++|||..||+||..|+|+|..|.|.||..|+|||..+|.|||.+||||+.+|+++|.+++.|+..+++.+..|..
T Consensus 457 lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y~~ 536 (1062)
T KOG4229|consen 457 LQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLYVF 536 (1062)
T ss_pred HHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred CCC-CCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHhhchhhhhhccCCCCccccc-------------------
Q 048174 481 PKL-TRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLSASECSFVSGLFPPISEETT------------------- 540 (1303)
Q Consensus 481 p~~-~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~------------------- 540 (1303)
|+. ....|+|.||||.|.|++.||++||+|.++.+++.++++|.+.++..++...+....
T Consensus 537 ~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~~ 616 (1062)
T KOG4229|consen 537 PKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEVT 616 (1062)
T ss_pred ccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccchhh
Confidence 765 456999999999999999999999999999999999999999999888764321100
Q ss_pred ------CC-----C---------CccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCcc-ccccceecccH
Q 048174 541 ------KS-----S---------KFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSN-NVMQQLRSGGV 599 (1303)
Q Consensus 541 ------~~-----~---------~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~gv 599 (1303)
+. + ...+++..++-++.+....|.+..+||.|||++|..-.+..++.. .+..++...|.
T Consensus 617 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~ 696 (1062)
T KOG4229|consen 617 LRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGS 696 (1062)
T ss_pred hccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhccc
Confidence 00 0 123566677778888889999999999999999999999999987 89999999999
Q ss_pred HHHHHHHhhCCCcccCHHHHHHhhcccccchhccccchHHHHHHHHHhcCCCCcccccccceeccchhhHHHHHHHhhhc
Q 048174 600 LEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQNYDEKIACKWILEKMDLKGYQIGKTKVFLKAGQMAELDAKRAKLLG 679 (1303)
Q Consensus 600 le~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~LE~~R~~~l~ 679 (1303)
..+....+.|+..+..|.+++++++...-.......-.+.+|..++++-+.+.+..+.+.++.+...-..+.-.+.+...
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t 776 (1062)
T KOG4229|consen 697 TATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVT 776 (1062)
T ss_pred ccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhh
Confidence 99999999999999999999887764432211111223456777888877778888888877765322222111111111
Q ss_pred --------------------------hhHHHHhhhhhhhhhhhhhhh----hhhHHHHHHhhccccceeccccc------
Q 048174 680 --------------------------HSAEVIQSQHRRRVTQKHYIT----LVQAAVCIQSSCRGILARRYCKV------ 723 (1303)
Q Consensus 680 --------------------------~aA~~IQ~~~R~~~~Rk~y~~----~r~aai~IQa~~Rg~laRk~~~~------ 723 (1303)
..+..||+-+.....+..+.. .-..++.+|..|=|...+.....
T Consensus 777 ~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~ 856 (1062)
T KOG4229|consen 777 QLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAE 856 (1062)
T ss_pred hHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheecccccc
Confidence 122333333333222222111 11345555655555433221100
Q ss_pred ------------------------------------------------cc--------hhhh---HHHHHHHHHHHHHHH
Q 048174 724 ------------------------------------------------KK--------KEAA---AVKIQKNSRTMMTRK 744 (1303)
Q Consensus 724 ------------------------------------------------~r--------~~~A---Ai~IQ~~~Rg~~aRr 744 (1303)
.+ .... +...|++++....++
T Consensus 857 i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~ 936 (1062)
T KOG4229|consen 857 ISPQDSVNQSRIGLPETVDTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERK 936 (1062)
T ss_pred ccchhccccccccCCccchhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccc
Confidence 00 0111 335677888888888
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhhhhhhhHHHHHHHH
Q 048174 745 AYSNVKAAAIVLQAWLRARAAVRAMAALSELRHRKHAKGALSIQTSWRGHRDFSYYKRLRKASVFSQSRWRGIAARREFR 824 (1303)
Q Consensus 745 ~~~k~r~aai~IQ~~~R~~~~~R~~~arr~~~~~~~~~AA~~IQ~~~Rg~~aRr~~~~~~kaav~IQ~~~R~~~aRkel~ 824 (1303)
.+.++..+.+++| |+.+...+..-. ......++..+|..|+.+..+..+.-.+++.+.+|..++....++.+-
T Consensus 937 ~~~~~~~~~v~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1009 (1062)
T KOG4229|consen 937 GLLRLSEGSVLIQ--RLELLGRRTCPV-----AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIFA 1009 (1062)
T ss_pred cchhhcchhHHHH--HHHHhcccCCcc-----hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhHH
Confidence 8888888888888 444433332110 122345788888999998888888888888888888887766555543
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.37 E-value=2.6e-10 Score=152.96 Aligned_cols=439 Identities=14% Similarity=0.091 Sum_probs=222.7
Q ss_pred EEEeeeccccccCCCCCHHHHHHHhhhHHHHhHHhHhhHHhhHhhhhccCCCcccccccChHHHHHhhhcCCCcccccch
Q 048174 372 LIGVLDIYGFESFESNSFEQFCINFTNEKLQQHFNQNVFKMEQNDYRNEEIDWSYVHFVDNQDVLDLIEKKPGGIIALLD 451 (1303)
Q Consensus 372 ~IgiLDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~vf~~eq~ey~~EgI~w~~i~~~dn~~~ldlie~~p~Gil~lLd 451 (1303)
+.+-.++.|+.. +| .+++=+-|...-...+|.+ .-.+...+++|. .+-..+|.+++-.. +.|.-+
T Consensus 399 vg~e~v~k~q~~------~q--~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaG-FEIfe~- 463 (1930)
T KOG0161|consen 399 VGREWVSKAQNV------EQ--VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAG-FEIFEF- 463 (1930)
T ss_pred ccchhhhhcchH------HH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeecc-ccccCc-
Confidence 444566666654 34 7778888888777888864 455677788887 34444555555322 222211
Q ss_pred hhhcCCCCchHH----HH-HHHHHHhcCCCCcccCC----CCCCCcEEEccCCCcchhhhhhhhhccchhHHHHHHHHh-
Q 048174 452 EACMFPKSTHEN----FS-QKLYQTFKDHKRFIKPK----LTRSDFTIVHYAGEVHYQSDLFLDKNKDYVVAEHQDLLS- 521 (1303)
Q Consensus 452 ee~~~p~~td~~----f~-~kl~~~~~~~~~f~~p~----~~~~~F~I~HyaG~V~Y~~~gflekN~D~l~~~~~~ll~- 521 (1303)
.+-+. |. +||.+.| +|.-|+.-. --.-.|+.-|| |-=-=.+.+.|+|=. .++.+|-
T Consensus 464 -------nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidf-G~Dlq~~idLIEkp~-----Gi~slLdE 529 (1930)
T KOG0161|consen 464 -------NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDF-GLDLQPTIDLIEKPM-----GILSLLDE 529 (1930)
T ss_pred -------CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeecc-ccchhhhHHHHhchh-----hHHHHHHH
Confidence 11111 21 3444444 344443210 11236677777 322223334445422 3334332
Q ss_pred ------hchhhhhhccCCCCcccccCCCCccchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCcccccccee
Q 048174 522 ------ASECSFVSGLFPPISEETTKSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLR 595 (1303)
Q Consensus 522 ------~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr 595 (1303)
+|...|+..|+.... ++.++|.... ..+....+....-+++ |+|.-+|-..++..-....|+.+|+
T Consensus 530 Ec~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~ 601 (1930)
T KOG0161|consen 530 ECVVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLK 601 (1930)
T ss_pred HHhcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHH
Confidence 244455555543211 1122222211 2334445555555555 9999999999888888999999999
Q ss_pred cccHHHHHHHHhhCCCcccCHHHHHHhhcccccchhccc-----cchHHHHHHHHHhcCCCCc------------ccc--
Q 048174 596 SGGVLEAIRVKCAGYPTRKTFSEFLDRFGILLPEIRKQN-----YDEKIACKWILEKMDLKGY------------QIG-- 656 (1303)
Q Consensus 596 ~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~~-----~~~~~~~~~il~~~~~~~~------------~iG-- 656 (1303)
+++ .+.|...-.| +..+..+..++.. ......+. .-.+.-...++..+..+.- .-|
T Consensus 602 ~s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~l 676 (1930)
T KOG0161|consen 602 QST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKL 676 (1930)
T ss_pred hcc-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCcccccccc
Confidence 999 8877776655 5556666655544 11100000 0112222233332221110 111
Q ss_pred -cccceeccchhhHHHHHHHhhhchhHHHHhhhhhhhhhhh-------hhh------------hhhhHHHHHHhhc--cc
Q 048174 657 -KTKVFLKAGQMAELDAKRAKLLGHSAEVIQSQHRRRVTQK-------HYI------------TLVQAAVCIQSSC--RG 714 (1303)
Q Consensus 657 -kTkVFlr~~~~~~LE~~R~~~l~~aA~~IQ~~~R~~~~Rk-------~y~------------~~r~aai~IQa~~--Rg 714 (1303)
...|..+-..-..||-+ +|++ .||-.|- +|. ..+.+...|.... ..
T Consensus 677 d~~lvl~QLrcngVLEgI----------RicR--~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~ 744 (1930)
T KOG0161|consen 677 DAPLVLNQLRCNGVLEGI----------RICR--QGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDK 744 (1930)
T ss_pred CHHHHHHHhhccCcHHHH----------HHHH--hhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhccc
Confidence 11111111111222222 2211 2332222 222 0011111111100 00
Q ss_pred cceeccccccchhhhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhh
Q 048174 715 ILARRYCKVKKKEAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQAWLRARAAVRAMAALSELRHR-KHAKGALSIQTSWRG 793 (1303)
Q Consensus 715 ~laRk~~~~~r~~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~~~~R~~~arr~~~~~-~~~~AA~~IQ~~~Rg 793 (1303)
.+ | |-...=+...+-+-+.+--.+-.++...++.+|+ .+||+.+|+.+.++ .+..|+.+||+..|.
T Consensus 745 ~l----y---riG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA------~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~ 811 (1930)
T KOG0161|consen 745 NL----Y---RIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQA------AIRGYLARKEFKKRLQQLDAIKVIQRNIRA 811 (1930)
T ss_pred ce----E---eecceeeeehHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0000000111112223333333344456777888 66667776665443 346788999999999
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 048174 794 HRDFSYYKRLRKASVFSQSRWRGIAARREFRKLKMTAKKEE-RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEV 871 (1303)
Q Consensus 794 ~~aRr~~~~~~kaav~IQ~~~R~~~aRkel~~lk~aa~~~~-LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~ 871 (1303)
|...+.| .|||-+..-+.+........... ++.++..+ ..++..+..+.+ ++....++..+...
T Consensus 812 ~~~lr~w-----------~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~e---le~~~~~~~~e~~~ 877 (1930)
T KOG0161|consen 812 YLKLRTW-----------PWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKE---LEEKLVKLLEEKND 877 (1930)
T ss_pred HHhhccC-----------HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 9888887 79999999999887655444444 77778888 888777777777 44555566666667
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 048174 872 HVKECDTTDRAIEVYVKECD 891 (1303)
Q Consensus 872 Le~qlee~e~~~~~le~e~~ 891 (1303)
|+.+++..++...++++...
T Consensus 878 l~~~l~~e~~~~~~aee~~~ 897 (1930)
T KOG0161|consen 878 LQEQLQAEKENLAEAEELLE 897 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77776666655555554443
No 24
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.70 E-value=1.8e-08 Score=108.73 Aligned_cols=90 Identities=24% Similarity=0.284 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhc-ccccccCC
Q 048174 76 VFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFG-NAKTVKNN 154 (1303)
Q Consensus 76 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFG-NAkT~rN~ 154 (1303)
||+.+..++..|+ ++.|+||+..|+||||||+|+.--. ...+--...+ +.+++.....++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~-~~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTV-TDVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHH-HHHHHHHhhccccccccccCCCC
Confidence 8998889999987 5799999999999999999854211 0000001122 23677888899999 99999999
Q ss_pred CCCcccceEEEEEcCCCCee
Q 048174 155 NSSRFGKFVEIQFDKRGRIS 174 (1303)
Q Consensus 155 NSSRfGK~i~l~f~~~g~i~ 174 (1303)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654433
No 25
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.42 E-value=3.1e-07 Score=115.79 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=89.2
Q ss_pred hhchhHHHHhhhhhhhhhhhhhhhhhhHHHHHHhhccccceeccccccch--------hhhHHHHHHHHHHHHHHHhhcc
Q 048174 677 LLGHSAEVIQSQHRRRVTQKHYITLVQAAVCIQSSCRGILARRYCKVKKK--------EAAAVKIQKNSRTMMTRKAYSN 748 (1303)
Q Consensus 677 ~l~~aA~~IQ~~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~~~r~--------~~AAi~IQ~~~Rg~~aRr~~~k 748 (1303)
....+|..||++||+|+.|+.|+.++.-++.||+++||+..|+.|+.+-. -.++.++|+.+|||+.++.+.+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34567889999999999999999999999999999999988888876432 1456678888888888888777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Q 048174 749 VKAAAIVLQAWLRARAAVRAMAALSELRHRKHAKGALSIQTSWRGHRDFSYYKRL 803 (1303)
Q Consensus 749 ~r~aai~IQ~~~R~~~~~R~~~arr~~~~~~~~~AA~~IQ~~~Rg~~aRr~~~~~ 803 (1303)
.-.++++||..+|.+. ..++.-+.+..+|+++||+++|.+.+|..|+++
T Consensus 888 ~~~a~t~~e~~yd~yK------q~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~ 936 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYK------QLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL 936 (975)
T ss_pred cccccchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777788888444443 332334445567888888888888777666443
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.36 E-value=1.5e-05 Score=101.08 Aligned_cols=86 Identities=31% Similarity=0.381 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 048174 727 EAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQAWLRARAAVRAMAALSELRHRKHAKGALSIQTSWRGHRDFSYYKRLRKA 806 (1303)
Q Consensus 727 ~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~~~~R~~~arr~~~~~~~~~AA~~IQ~~~Rg~~aRr~~~~~~ka 806 (1303)
..+++.||+.+|+|..|+.|..+|.+++.||+ .+||..+|+ ... +..||+.||+.||++..|+.|...+.+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~------~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~ 743 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQA------YSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPA 743 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35777899999999999999999999999999 566666665 222 678999999999999999999999999
Q ss_pred hHHhhhhhhhHHHHH
Q 048174 807 SVFSQSRWRGIAARR 821 (1303)
Q Consensus 807 av~IQ~~~R~~~aRk 821 (1303)
++.+|+..|++++|.
T Consensus 744 ~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 744 SITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999998
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.25 E-value=0.00012 Score=95.72 Aligned_cols=129 Identities=23% Similarity=0.136 Sum_probs=75.3
Q ss_pred hhhhhhhhhhhhhHHHHHHhhccccceeccccccchhhhHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHHHHHHH
Q 048174 691 RRVTQKHYITLVQAAVCIQSSCRGILARRYCKVKKKEAAAVKIQKNSRTMMTRKA--YSNVKAAAIVLQAWLRARAAVRA 768 (1303)
Q Consensus 691 ~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~aRr~--~~k~r~aai~IQ~~~R~~~~~R~ 768 (1303)
+.+...|-..+...++.||++|||+..|++|....+ ....||...++++.++. +...-..++.+|..||....+..
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~ 811 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALK--RIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKE 811 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHH
Confidence 344444555667788888888888888877655332 22334444444444443 22233456778885555432222
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHhhHHHHHH--HHHHhhhhHHhhhhhhhHHHHHHHHHHHHH
Q 048174 769 MAALSELRHRKHAKGALSIQ-TSWRGHRDFSY--YKRLRKASVFSQSRWRGIAARREFRKLKMT 829 (1303)
Q Consensus 769 ~~arr~~~~~~~~~AA~~IQ-~~~Rg~~aRr~--~~~~~kaav~IQ~~~R~~~aRkel~~lk~a 829 (1303)
+.. .......+| ..|+....+.. -....++.+.+|..||...+++.+..++..
T Consensus 812 ~~~--------~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~ 867 (1463)
T COG5022 812 YRS--------YLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKE 867 (1463)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhH
Confidence 211 123455666 55555554442 334567888888889988888888877633
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.17 E-value=2.9e-06 Score=107.36 Aligned_cols=122 Identities=26% Similarity=0.351 Sum_probs=98.1
Q ss_pred hHHHHHHhhccccceeccccccchhhhHHHHHHHHHHHHHHHhhcchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 048174 703 QAAVCIQSSCRGILARRYCKVKKKEAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQ----AWLRARAAVRAMAALSELRHR 778 (1303)
Q Consensus 703 ~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ----~~~R~~~~~R~~~arr~~~~~ 778 (1303)
.|+..||.++|||+.|+.|-.+|. -+++||+.+|||..|+.|.++.+++-.+- +|-|...++|++..++....
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~--p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~- 887 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQ--PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE- 887 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCC--ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc-
Confidence 578889999999999998888774 57899999999999999999887765543 34444557777776665332
Q ss_pred HhHHHHHHHHHHHhhHHHH--HHHHHHhhhhHHhhhhhhhHHHHHHHHHHHH
Q 048174 779 KHAKGALSIQTSWRGHRDF--SYYKRLRKASVFSQSRWRGIAARREFRKLKM 828 (1303)
Q Consensus 779 ~~~~AA~~IQ~~~Rg~~aR--r~~~~~~kaav~IQ~~~R~~~aRkel~~lk~ 828 (1303)
.+.|++.||..+|-|+.- ..|.++.+|+++||+.+|.+.++.+++++..
T Consensus 888 -~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 888 -QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344899999999999877 6788999999999999999999988887653
No 29
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=98.15 E-value=6.8e-07 Score=115.62 Aligned_cols=210 Identities=17% Similarity=0.144 Sum_probs=165.4
Q ss_pred cchhHhhHhhHHHHHHHHccCCCeeEEecCCCCCCCCCcCCccccccceecccHHHHHHHHhhCCCcccCHHHHHHhhcc
Q 048174 546 SSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNELKPVILDSNNVMQQLRSGGVLEAIRVKCAGYPTRKTFSEFLDRFGI 625 (1303)
Q Consensus 546 ~tv~~~fk~sL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~eF~~Ry~~ 625 (1303)
+....++......++..+....|.|++||+-|..+....|+...|..|+++.|+++..+++..+|+..+++.+|...+.+
T Consensus 789 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i 868 (1062)
T KOG4229|consen 789 PQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRI 868 (1062)
T ss_pred CccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccc
Confidence 33344667778889999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cccchhccccchHHHHHHHHHh--cCCCCcccccccceeccchhhHHHHHH-HhhhchhHHHHhhhhhhhhhhhhhhhhh
Q 048174 626 LLPEIRKQNYDEKIACKWILEK--MDLKGYQIGKTKVFLKAGQMAELDAKR-AKLLGHSAEVIQSQHRRRVTQKHYITLV 702 (1303)
Q Consensus 626 L~~~~~~~~~~~~~~~~~il~~--~~~~~~~iGkTkVFlr~~~~~~LE~~R-~~~l~~aA~~IQ~~~R~~~~Rk~y~~~r 702 (1303)
..+.... ......... .+.++++.|.++||+.......++..- .+....-+...|++++....++.+.++.
T Consensus 869 ~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 942 (1062)
T KOG4229|consen 869 GLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLS 942 (1062)
T ss_pred cCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhc
Confidence 8873211 111112221 144689999999999887655544332 2222213677899999999999999999
Q ss_pred hHHHHHHhhccccceeccccc-cchhhhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 048174 703 QAAVCIQSSCRGILARRYCKV-KKKEAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQAWLRAR 763 (1303)
Q Consensus 703 ~aai~IQa~~Rg~laRk~~~~-~r~~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~ 763 (1303)
.+.+.+| |++++.|+.... .....+|+-+|..|+.+..+..+.-.+.+++.+|..++..
T Consensus 943 ~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 1002 (1062)
T KOG4229|consen 943 EGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRP 1002 (1062)
T ss_pred chhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccc
Confidence 9999999 888888875542 2334677889999999999999999999988898844443
No 30
>PHA02768 hypothetical protein; Provisional
Probab=97.61 E-value=1.6e-05 Score=67.19 Aligned_cols=25 Identities=20% Similarity=0.612 Sum_probs=24.2
Q ss_pred ccccCccccccCccccchhHHhhcc
Q 048174 1115 NYNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1115 ~~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
-|+|+.|||.|+.+++|++|||+|+
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~ 29 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN 29 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC
Confidence 4999999999999999999999999
No 31
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.023 Score=70.04 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=8.6
Q ss_pred CCCcccchhhhhhh
Q 048174 1261 GYAPKREIDVLRKK 1274 (1303)
Q Consensus 1261 ~~~~~~~~~~~~~~ 1274 (1303)
+|+++|++=|.+|+
T Consensus 924 t~~egd~iLvtekd 937 (1118)
T KOG1029|consen 924 TFHEGDEILVTEKD 937 (1118)
T ss_pred cccccceEEEeecc
Confidence 56666666666555
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.47 E-value=0.053 Score=68.04 Aligned_cols=128 Identities=14% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh--------hhhhhhhhcchhhhhhccCCCccCcccCc-----hhH
Q 048174 860 KECDITNKGIEVHVKECDTTDRAIEVYVKECDTKD--------RATEVHVEDCDDIDRAIEPHPITGKIPCS-----NEE 926 (1303)
Q Consensus 860 ~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~--------~~~~~~~ee~~~~k~~l~e~~~~~e~~~~-----~~~ 926 (1303)
+....|+.+++.+++.+++++..++-|..|.+..- .+.+++..+-+..+..+ -++.|+.+. +..
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal---VrLRDlsA~ek~d~qK~ 401 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL---VRLRDLSASEKQDHQKL 401 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHHHHH
Confidence 33456666666666666666655555554433211 11122222222222111 223333332 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEK----------RLKKLEETERRVYQLQDSLNRLL 990 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~----------l~~kl~e~E~~~~~Lq~el~~Le 990 (1303)
.+.++....|+.+|+...+.|..+++++|.++.++++.... +.++--++|.++..|++++..|+
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 33444445566666666666666666666666666665544 23334445555555555555554
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.028 Score=69.27 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.9
Q ss_pred chhHHhhcch
Q 048174 1131 LGGHMNVHRR 1140 (1303)
Q Consensus 1131 l~~h~~~h~~ 1140 (1303)
|+|.-|-|+|
T Consensus 731 laGel~gktG 740 (1118)
T KOG1029|consen 731 LAGELRGKTG 740 (1118)
T ss_pred ccceeccccC
Confidence 4444455554
No 34
>PRK11637 AmiB activator; Provisional
Probab=97.41 E-value=0.015 Score=71.27 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 971 KLEETERRVYQLQDSLNRLLYCMSEQ 996 (1303)
Q Consensus 971 kl~e~E~~~~~Lq~el~~Le~kl~~l 996 (1303)
+..+.+..+.+|+.+..+|+..|..+
T Consensus 227 ~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 227 SLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444
No 35
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.28 E-value=0.015 Score=63.14 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048174 980 YQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 980 ~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
..|-.++++|++...+|..|++
T Consensus 160 e~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 160 EVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777778888888
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.027 Score=72.11 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVL 964 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~ 964 (1303)
-..+..+|+.|+.+|+.++...++++.++|.+..+++..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888877666554
No 37
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.19 E-value=0.27 Score=60.86 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHh
Q 048174 733 IQKNSRTMMTRKAYSNVKAAAIVLQAWLRARAAVRAMAALSELRHRKHAKGALSIQTSWRGHRDFSYYKRLR 804 (1303)
Q Consensus 733 IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~~~~R~~~arr~~~~~~~~~AA~~IQ~~~Rg~~aRr~~~~~~ 804 (1303)
|=+.+..|+.+.+|.+...++..+=. ..-.. .-+..+++++|+..|||++|+.++...
T Consensus 779 lv~kVn~WLv~sRWkk~q~~a~sVIK------LkNkI--------~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 779 LVAKVNKWLVRSRWKKSQYGALSVIK------LKNKI--------IYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHhHHHHhhhhhhheee------hhhHH--------HHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 44457789999998887655433222 00011 112347889999999999999886653
No 38
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.16 E-value=0.00094 Score=81.20 Aligned_cols=61 Identities=23% Similarity=0.458 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Q 048174 727 EAAAVKIQKNSRTMMTRKAYSNVKAAAIVLQAWLRARAAVRAMAALSELRHRKHAKGALSIQTSWRGHRDFSYYKRL 803 (1303)
Q Consensus 727 ~~AAi~IQ~~~Rg~~aRr~~~k~r~aai~IQ~~~R~~~~~R~~~arr~~~~~~~~~AA~~IQ~~~Rg~~aRr~~~~~ 803 (1303)
..-++.||+.||||.+|.+|++++.+++.|+ |||++. .| ..+..||+.+||+..++.|.+-
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K-~k--------------s~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYK-LK--------------SYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HH--------------HHHHHHHHHHHhhhhccccCCC
Confidence 4578899999999999999999999999999 888542 12 2566799999999999887653
No 39
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=97.15 E-value=0.00016 Score=79.84 Aligned_cols=29 Identities=28% Similarity=0.682 Sum_probs=24.6
Q ss_pred CccccCccccccCccccchhHHhhcchhh
Q 048174 1114 KNYNCSFCRREFRSAQALGGHMNVHRRDR 1142 (1303)
Q Consensus 1114 ~~~~c~~c~~~f~~~~~l~~h~~~h~~~~ 1142 (1303)
|||.|+.|+|.|+-.++|.-||.+|.+.+
T Consensus 214 KPF~C~hC~kAFADRSNLRAHmQTHS~~K 242 (279)
T KOG2462|consen 214 KPFSCPHCGKAFADRSNLRAHMQTHSDVK 242 (279)
T ss_pred CCccCCcccchhcchHHHHHHHHhhcCCc
Confidence 88888888888888888888888888754
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.14 E-value=0.25 Score=68.21 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 958 CAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 958 ~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+..++..++.+...+.+.+.....++.++..++.++..++.++.
T Consensus 450 l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~ 493 (1164)
T TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444443
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.14 E-value=0.35 Score=63.04 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048174 930 IENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRSSST 1009 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~~~ 1009 (1303)
.+++..+..+.+..++.|+++++.++..+..++++.+...+++.+.+.+....+.++..|..++.+...++..+-+.+..
T Consensus 389 ~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~d 468 (1074)
T KOG0250|consen 389 NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTD 468 (1074)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 36666777777777777777777777777778888788888888888888888888888888888888888833333333
Q ss_pred CCC
Q 048174 1010 STS 1012 (1303)
Q Consensus 1010 ~~s 1012 (1303)
..+
T Consensus 469 kvs 471 (1074)
T KOG0250|consen 469 KVS 471 (1074)
T ss_pred hhh
Confidence 333
No 42
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.13 E-value=0.66 Score=58.84 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKAL-------LQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~-------leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
.+++|..|++++..|++. .+.-++...++.+++..+.....++.+..+.....+..+...+...++.+..|.+
T Consensus 460 lEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqd 539 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQD 539 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555555431 1111111123444455555555566666777777777777777777777777777
Q ss_pred HHHHHHhhccc
Q 048174 999 QLKMILRSSST 1009 (1303)
Q Consensus 999 El~~~l~q~~~ 1009 (1303)
+++ .++.+..
T Consensus 540 qlq-e~~dq~~ 549 (1243)
T KOG0971|consen 540 QLQ-ELTDQQE 549 (1243)
T ss_pred HHH-HHHhhhh
Confidence 777 5555433
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.10 E-value=1.2 Score=55.13 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAE-----------ARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQ 996 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e-----------~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~l 996 (1303)
++|+.|..++..++..+.+.......++.++.+ .++++.++...+.-++..-.+|+.+...|..-+..|
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444444434433332 222333344444444444456666666666666667
Q ss_pred HHHHH
Q 048174 997 FSQLK 1001 (1303)
Q Consensus 997 e~El~ 1001 (1303)
+..+.
T Consensus 451 e~r~~ 455 (546)
T PF07888_consen 451 EQRLD 455 (546)
T ss_pred HHHHH
Confidence 76666
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.10 E-value=0.021 Score=69.90 Aligned_cols=13 Identities=8% Similarity=0.419 Sum_probs=5.8
Q ss_pred HHHhhCCCcccCH
Q 048174 604 RVKCAGYPTRKTF 616 (1303)
Q Consensus 604 ri~~~Gyp~r~~~ 616 (1303)
-|.+.||.+-..|
T Consensus 41 GiFKVGw~s~rdY 53 (546)
T PF07888_consen 41 GIFKVGWSSTRDY 53 (546)
T ss_pred EEeecCCCchhhe
Confidence 3344555544333
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.58 Score=61.24 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048174 859 VKECDITNKGIEVHVKECDTTD 880 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e 880 (1303)
..++.+++.++++|+..++.++
T Consensus 439 ~~~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 439 RIEIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444
No 46
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.96 E-value=0.64 Score=64.19 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
++..++..++.++.++.+++.++..++..+..+..++...+.....++.++..++.++.+++.++.
T Consensus 421 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~ 486 (1164)
T TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444444444444444444444444444444444
No 47
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.95 E-value=0.0002 Score=49.96 Aligned_cols=23 Identities=39% Similarity=0.868 Sum_probs=22.1
Q ss_pred cccCccccccCccccchhHHhhc
Q 048174 1116 YNCSFCRREFRSAQALGGHMNVH 1138 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~h 1138 (1303)
|+|+.|++.|++...|..||+.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999987
No 48
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=96.93 E-value=0.00026 Score=78.22 Aligned_cols=28 Identities=25% Similarity=0.681 Sum_probs=23.4
Q ss_pred ccccCccccccCccccchhHHhhcchhh
Q 048174 1115 NYNCSFCRREFRSAQALGGHMNVHRRDR 1142 (1303)
Q Consensus 1115 ~~~c~~c~~~f~~~~~l~~h~~~h~~~~ 1142 (1303)
+++|.+|||.|+-.--|.||.|+||||+
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEK 214 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEK 214 (279)
T ss_pred CcccccccccccchHHhhcccccccCCC
Confidence 6888888888888888888888888874
No 49
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.93 E-value=0.00022 Score=51.78 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=24.5
Q ss_pred ccccCccccccCccccchhHHhhcch
Q 048174 1115 NYNCSFCRREFRSAQALGGHMNVHRR 1140 (1303)
Q Consensus 1115 ~~~c~~c~~~f~~~~~l~~h~~~h~~ 1140 (1303)
||+|..|++.|.+.++|..|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 69999999999999999999999974
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.92 E-value=0.15 Score=57.43 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 048174 863 DITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEV 899 (1303)
Q Consensus 863 ~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~ 899 (1303)
.....++..|+.++.+++.....++.......+++..
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~ 124 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKV 124 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444444444433333333
No 51
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=96.91 E-value=0.0025 Score=79.19 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=40.8
Q ss_pred cccceecCCCc-----------cCCccCCCCCCCCcCCCCCccccCccccccCccccchhHHhhcchh
Q 048174 1085 VKEKWECEKCS-----------CSEAQHGQSSCGLIVWPPKNYNCSFCRREFRSAQALGGHMNVHRRD 1141 (1303)
Q Consensus 1085 ~~~~~~c~~c~-----------~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~~ 1141 (1303)
.=.+++|.-|. |-++|+|+ |||.|.+||..|++..+|+-|.-.|+..
T Consensus 350 ~~~khkCr~CakvfgS~SaLqiHlRSHTGE----------RPfqCnvCG~~FSTkGNLKvH~~rH~e~ 407 (958)
T KOG1074|consen 350 PFFKHKCRFCAKVFGSDSALQIHLRSHTGE----------RPFQCNVCGNRFSTKGNLKVHFQRHREK 407 (958)
T ss_pred ccccchhhhhHhhcCchhhhhhhhhccCCC----------CCeeecccccccccccceeeeeeecccc
Confidence 34568999993 67888888 9999999999999999999999999854
No 52
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.89 E-value=0.017 Score=65.05 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEK 967 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~ 967 (1303)
++..++.++...+..++.++.++.+++.++..+...+..
T Consensus 121 kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 121 KLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.86 E-value=0.21 Score=64.92 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=4.2
Q ss_pred CCCcCCcc
Q 048174 581 KPVILDSN 588 (1303)
Q Consensus 581 ~p~~fd~~ 588 (1303)
+|..|+..
T Consensus 125 k~eiyG~~ 132 (1074)
T KOG0250|consen 125 KPEIYGNS 132 (1074)
T ss_pred ChhhcCCe
Confidence 44556554
No 54
>PRK11637 AmiB activator; Provisional
Probab=96.86 E-value=0.19 Score=61.54 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 935 AEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 935 ~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.....|+.++.+++....+++.+..+++....+..+.+..++......+.++..|+.....++..+.
T Consensus 184 ~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444555555555555566666666666666555
No 55
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=96.82 E-value=0.00075 Score=82.06 Aligned_cols=46 Identities=22% Similarity=0.660 Sum_probs=40.1
Q ss_pred ccccceecCCCc-----------cCCccCCCCCCCCcCCCCCccccCccccccCccccchhHHhhcc
Q 048174 1084 WVKEKWECEKCS-----------CSEAQHGQSSCGLIVWPPKNYNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1084 ~~~~~~~c~~c~-----------~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
..-++|+|.+|+ |-+.|.|+ |||+|+-|+|.|+++.....||-+-+
T Consensus 277 a~lRKFKCtECgKAFKfKHHLKEHlRIHSGE----------KPfeCpnCkKRFSHSGSySSHmSSKK 333 (1007)
T KOG3623|consen 277 ALLRKFKCTECGKAFKFKHHLKEHLRIHSGE----------KPFECPNCKKRFSHSGSYSSHMSSKK 333 (1007)
T ss_pred hhhccccccccchhhhhHHHHHhhheeecCC----------CCcCCcccccccccCCcccccccccc
Confidence 456789999996 66778888 99999999999999999999997655
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.79 E-value=0.087 Score=54.50 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 941 KALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 941 e~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
...+..|+..++..+..+......+.....+.+..+..+..|..+...++.++..|+....
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444455556666677777777777777777777666554
No 57
>PHA00616 hypothetical protein
Probab=96.77 E-value=0.00028 Score=56.94 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=26.0
Q ss_pred ccccCccccccCccccchhHHhhcchh
Q 048174 1115 NYNCSFCRREFRSAQALGGHMNVHRRD 1141 (1303)
Q Consensus 1115 ~~~c~~c~~~f~~~~~l~~h~~~h~~~ 1141 (1303)
||.|+.||+.|...+.|..|+|.|+++
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence 799999999999999999999999986
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.68 Score=59.66 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
...++.|..|.+.|+.++...++.+..++.++..++.++..+..++...+..+..++.++.....++.....++.
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~ 888 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEIS 888 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 345566666777777777777777777777777777777777777777777777777777777777766666554
No 59
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=96.75 E-value=0.00042 Score=84.16 Aligned_cols=75 Identities=23% Similarity=0.434 Sum_probs=54.5
Q ss_pred HHHHHhhcccchhHHhhhccccc-------cccccccceecCCCc-----------cCCccCCCCCCCCcCCCCCccccC
Q 048174 1058 LQLIVQDLSATEITAVLMNKKEV-------SMEWVKEKWECEKCS-----------CSEAQHGQSSCGLIVWPPKNYNCS 1119 (1303)
Q Consensus 1058 ~~l~v~~~s~~~~~~~~~~~~~~-------~~~~~~~~~~c~~c~-----------~~~~~~~~~~~~~~~~~~~~~~c~ 1119 (1303)
.+-.-+|=+.+.+.|++.....- ...+-.|.|-|+-|. |+-.|+|. |||+|-
T Consensus 857 fqderqd~ssE~~agvld~ndsds~k~~tk~~kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGq----------RPyqC~ 926 (1007)
T KOG3623|consen 857 FQDERQDHSSEFGAGVLDPNDSDSGKAETKHAKTEDGMYACDQCDKAFQKQSSLARHKYEHSGQ----------RPYQCI 926 (1007)
T ss_pred cchhhccccccccccccCCCcccccccccccccCccccchHHHHHHHHHhhHHHHHhhhhhcCC----------CCcccc
Confidence 33344555555566666553322 224557889999993 44455555 999999
Q ss_pred ccccccCccccchhHHhhcchhh
Q 048174 1120 FCRREFRSAQALGGHMNVHRRDR 1142 (1303)
Q Consensus 1120 ~c~~~f~~~~~l~~h~~~h~~~~ 1142 (1303)
+|.|.|.+.-.|..|||.|.||+
T Consensus 927 iCkKAFKHKHHLtEHkRLHSGEK 949 (1007)
T KOG3623|consen 927 ICKKAFKHKHHLTEHKRLHSGEK 949 (1007)
T ss_pred hhhHhhhhhhhhhhhhhhccCCC
Confidence 99999999999999999999986
No 60
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.72 E-value=0.23 Score=68.44 Aligned_cols=7 Identities=0% Similarity=-0.149 Sum_probs=2.7
Q ss_pred HHHHhcC
Q 048174 643 WILEKMD 649 (1303)
Q Consensus 643 ~il~~~~ 649 (1303)
.+|..++
T Consensus 126 ~~l~~~~ 132 (1179)
T TIGR02168 126 DLFLDTG 132 (1179)
T ss_pred HHHhccC
Confidence 3443333
No 61
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.66 E-value=1.9 Score=60.06 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=20.0
Q ss_pred cccCccccccCccccchhHHhhcc
Q 048174 1116 YNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
.=|..||-.|.++|.+-..|.-+-
T Consensus 614 ~L~eq~g~~~~~~~~v~~~mq~~~ 637 (1486)
T PRK04863 614 RLREQSGEEFEDSQDVTEYMQQLL 637 (1486)
T ss_pred HHHHhcchhhcCHHHHHHHHHHHH
Confidence 458899999999999999886654
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.64 E-value=0.15 Score=52.76 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 932 NLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMS 994 (1303)
Q Consensus 932 ~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~ 994 (1303)
.|...+..|+.+++....++.+...++.+..........+...++.+...+...+..|..++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444443
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.59 E-value=0.34 Score=61.51 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQ 945 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~le 945 (1303)
.+.+..++.++.+++..+.
T Consensus 305 ~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 305 KDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.58 E-value=0.92 Score=58.54 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+.+.|-..|..++++...||..+....+...+|-..|.+...++.-++..+..=+.+|.+|...+.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666666666666666776666666666666666666666666555
No 65
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=96.58 E-value=0.00099 Score=82.63 Aligned_cols=51 Identities=27% Similarity=0.602 Sum_probs=41.8
Q ss_pred cccccccceecCCC----c-------cCCccCCCCCCCCcCCCCCccccCccccccCccccchhHHhhcchh
Q 048174 1081 SMEWVKEKWECEKC----S-------CSEAQHGQSSCGLIVWPPKNYNCSFCRREFRSAQALGGHMNVHRRD 1141 (1303)
Q Consensus 1081 ~~~~~~~~~~c~~c----~-------~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~~ 1141 (1303)
...+.-++-+|=-| + |-+.|+|+ |||+|++|||.|.+..+|+-||-+|+-.
T Consensus 598 ~~~~~TdPNqCiiC~rVlSC~saLqmHyrtHtGE----------RPFkCKiCgRAFtTkGNLkaH~~vHka~ 659 (958)
T KOG1074|consen 598 SENKRTDPNQCIICLRVLSCPSALQMHYRTHTGE----------RPFKCKICGRAFTTKGNLKAHMSVHKAK 659 (958)
T ss_pred cccccCCccceeeeeecccchhhhhhhhhcccCc----------CccccccccchhccccchhhcccccccC
Confidence 44456677788888 2 45677877 9999999999999999999999999853
No 66
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.54 E-value=1.5 Score=60.50 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 976 ERRVYQLQDSLNRLLYCMSEQFSQ 999 (1303)
Q Consensus 976 E~~~~~Lq~el~~Le~kl~~le~E 999 (1303)
+..+..++.++..++..+..++.+
T Consensus 439 ~~~~~~~~~~~~~l~~~~~~~~~~ 462 (1179)
T TIGR02168 439 QAELEELEEELEELQEELERLEEA 462 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=2.3 Score=56.07 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=6.5
Q ss_pred ccchhHHhhcch
Q 048174 1129 QALGGHMNVHRR 1140 (1303)
Q Consensus 1129 ~~l~~h~~~h~~ 1140 (1303)
..|-.-.|+|.|
T Consensus 722 d~LeQAtRiayg 733 (1293)
T KOG0996|consen 722 DNLEQATRIAYG 733 (1293)
T ss_pred cCHHHHHHHhhc
Confidence 444455566654
No 68
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.49 E-value=0.0032 Score=43.04 Aligned_cols=20 Identities=45% Similarity=0.672 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 048174 782 KGALSIQTSWRGHRDFSYYK 801 (1303)
Q Consensus 782 ~AA~~IQ~~~Rg~~aRr~~~ 801 (1303)
+||+.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57888888888888888763
No 69
>PRK02224 chromosome segregation protein; Provisional
Probab=96.47 E-value=0.5 Score=63.41 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 978 RVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 978 ~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
....+...+..++.++..+.++..
T Consensus 406 ~~~~~e~~l~~l~~~~~~l~~~~~ 429 (880)
T PRK02224 406 DLGNAEDFLEELREERDELREREA 429 (880)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444
No 70
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.46 E-value=0.0026 Score=43.50 Aligned_cols=20 Identities=40% Similarity=0.492 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q 048174 728 AAAVKIQKNSRTMMTRKAYS 747 (1303)
Q Consensus 728 ~AAi~IQ~~~Rg~~aRr~~~ 747 (1303)
.||++||++||||++|++|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 47888888888888888874
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.45 E-value=2.7 Score=54.80 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048174 968 RLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILR 1005 (1303)
Q Consensus 968 l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~ 1005 (1303)
.++.+.++|..+..-+..+...+..|..|+.++.++|+
T Consensus 1708 kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1708 KLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455566666666666666666677777777765554
No 72
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.43 E-value=0.0026 Score=74.95 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=45.4
Q ss_pred EeeCCCCCCCCCCcHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHH
Q 048174 44 IALNPFQPLSHLYDAYMMERYKGVPFGKLSPHVFAIADAAYREMINEGKSNSILVSGESGAGKTETTK 111 (1303)
Q Consensus 44 iavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 111 (1303)
.++|||...| |++.+-..++. +.++|-|-| -+.-|..-..||+||++||.|||||+-.-
T Consensus 22 k~~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiP 80 (699)
T KOG0925|consen 22 KAINPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIP 80 (699)
T ss_pred hhcCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCc
Confidence 3499999997 88877666643 467775544 35677777899999999999999998643
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.42 E-value=4.7 Score=56.47 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEK 967 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~ 967 (1303)
....++......+.++.++.+++.++..++..+...++....
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666666555555555554444
No 74
>PRK09039 hypothetical protein; Validated
Probab=96.40 E-value=0.5 Score=56.11 Aligned_cols=43 Identities=7% Similarity=-0.119 Sum_probs=21.1
Q ss_pred HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 835 RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECDTTDRAIEVYV 887 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le 887 (1303)
|+.++.+| +-|..+.... ..++.++.+++.+++.++..+..++
T Consensus 58 L~~qIa~L~e~L~le~~~~----------~~l~~~l~~l~~~l~~a~~~r~~Le 101 (343)
T PRK09039 58 LNSQIAELADLLSLERQGN----------QDLQDSVANLRASLSAAEAERSRLQ 101 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 5554444333 3344444444444444444444433
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.33 E-value=0.52 Score=59.87 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 933 LSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDS 985 (1303)
Q Consensus 933 L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~e 985 (1303)
|..++.+|...+...+.-..++.+++.+++..+..+..+++.-......|+.+
T Consensus 179 ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 179 LTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444444444444455444444444444333333344333
No 76
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.33 E-value=0.22 Score=63.05 Aligned_cols=10 Identities=50% Similarity=0.836 Sum_probs=7.0
Q ss_pred ccccCccccc
Q 048174 1115 NYNCSFCRRE 1124 (1303)
Q Consensus 1115 ~~~c~~c~~~ 1124 (1303)
.+-|..||+.
T Consensus 688 ~~l~k~~~~~ 697 (980)
T KOG0980|consen 688 NDLCKKCGRE 697 (980)
T ss_pred HHHHHHHHHH
Confidence 3678888764
No 77
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.31 E-value=5.5 Score=55.21 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=66.9
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhchHHHhhcccccccCCCCCcccceEEEEEcCCCCeee
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKRGRISG 175 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGK~i~l~f~~~g~i~G 175 (1303)
-.|+|+.|||||-..-.|.--|-..+.. .-.+..+.+-|- ---|+ +...| =-.++|.||..+...+
T Consensus 27 t~IvGPNGSGKSNI~DAi~fVLG~~s~k-~lRa~~~~DlIf------~g~~~-r~~~~------~A~V~l~fdN~d~~~~ 92 (1163)
T COG1196 27 TAIVGPNGSGKSNIVDAIRFVLGEQSAK-NLRASKMSDLIF------AGSGN-RKPAN------YAEVELTFDNSDNTLP 92 (1163)
T ss_pred eEEECCCCCchHHHHHHHHHHhCcchhh-hhhccCCcceee------CCCCC-CCCCC------ceEEEEEEeCCCCcCC
Confidence 3567999999997655554443322110 001122222221 11111 11111 1368888987763333
Q ss_pred eEEeeeeecccceeecCCCCCceeeeeecccCC--hhhHhhcCCCCCCCCccccCCCcccccCCCCHHHHHHHHhhhhhc
Q 048174 176 AAIRTYLLERSRVCKISDPERNYHCFYLLCAAP--PDEIERYKLGNPTSFHYLNQSNCYELVGVNDANDYLATRRAMDVI 253 (1303)
Q Consensus 176 a~i~~yLLEksRvv~q~~~ERNfHIFYqll~~~--~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~Al~~l 253 (1303)
...... =-+|-+.. .|+..|=|==.-|... .+.....||+ +..|..+.||... ..+
T Consensus 93 ~~~~ei--~v~Rri~r-~g~S~Y~INg~~~~~~dI~~l~~~~gi~-~~~~~iV~QG~V~------------------~i~ 150 (1163)
T COG1196 93 LEYEEI--SVTRRIYR-DGESEYYINGEKVRLKDIQDLLADSGIG-KESYSIVSQGKVE------------------EII 150 (1163)
T ss_pred cccceE--EEEEEEEE-cCCcEEEECCcEeeHHHHHHHHHhcCCC-CCCCceeecccHH------------------HHH
Confidence 332210 01344444 6664332221222110 1333445554 4556788887532 234
Q ss_pred cCCHHHHHHHHHHHHHHHHh
Q 048174 254 GISRKEQDAIFGVVAAILHL 273 (1303)
Q Consensus 254 G~~~~~~~~I~~ilaaILhL 273 (1303)
..++.+...||.=.|||+-.
T Consensus 151 ~~kp~err~iiEEaaGv~~y 170 (1163)
T COG1196 151 NAKPEERRKLIEEAAGVSKY 170 (1163)
T ss_pred cCCHHHHHHHHHHHhchHHH
Confidence 56677777777777766643
No 78
>PRK02224 chromosome segregation protein; Provisional
Probab=96.30 E-value=1.1 Score=60.16 Aligned_cols=6 Identities=17% Similarity=0.894 Sum_probs=2.5
Q ss_pred ceeccc
Q 048174 660 VFLKAG 665 (1303)
Q Consensus 660 VFlr~~ 665 (1303)
||+..|
T Consensus 133 ~~i~Qg 138 (880)
T PRK02224 133 AYVRQG 138 (880)
T ss_pred eEeecc
Confidence 344443
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.30 E-value=0.29 Score=54.55 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLE 973 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~ 973 (1303)
..+.+.|+.|+..++.+..+++..+.++..+..+++++...+..++.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444444444444333333
No 80
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.28 E-value=6.5 Score=54.48 Aligned_cols=48 Identities=27% Similarity=0.265 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 954 SARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 954 le~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
...++..++..++++...+.+.+..+..++..+..+...++.++.++.
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 491 (1163)
T COG1196 444 LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444444444444444
No 81
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=1.2 Score=57.49 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048174 858 EVKECDITNKGIEVHVKECDTTDRAIEVYVKEC 890 (1303)
Q Consensus 858 ~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~ 890 (1303)
...+.+++..++++++.++.+.+..+...+.+.
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i 771 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKI 771 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655554444443
No 82
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.13 E-value=2.1 Score=50.23 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADD 953 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~e 953 (1303)
...++.|+.|+..|+..+...++...+
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777776666666555544
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.11 E-value=1.7 Score=56.10 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=11.0
Q ss_pred cccccccCCCCCCC
Q 048174 1250 MRAAFGAGNSKGYA 1263 (1303)
Q Consensus 1250 ~~~~~~~~~~~~~~ 1263 (1303)
-++++|-|.+.++.
T Consensus 1137 ~~~vvG~g~~~~l~ 1150 (1195)
T KOG4643|consen 1137 ERRVVGEGEKRELV 1150 (1195)
T ss_pred cCCCCCCccccccC
Confidence 36788888888877
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.10 E-value=0.53 Score=59.78 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRAD 952 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ 952 (1303)
..++..+...+..|+.++.+++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666555555555
No 85
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=96.09 E-value=0.0032 Score=66.33 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=29.0
Q ss_pred ccccccceecCCCccCCcc----CCCCCCCCcCCCCCccccCccccccCccccchhHHhhcchh
Q 048174 1082 MEWVKEKWECEKCSCSEAQ----HGQSSCGLIVWPPKNYNCSFCRREFRSAQALGGHMNVHRRD 1141 (1303)
Q Consensus 1082 ~~~~~~~~~c~~c~~~~~~----~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~~ 1141 (1303)
++.....|-|..|+..-.- +..- ..-.+-|.|-|.+|||.|.-.=.|..|+|.|+|-
T Consensus 111 sssd~d~ftCrvCgK~F~lQRmlnrh~---kch~~vkr~lct~cgkgfndtfdlkrh~rthtgv 171 (267)
T KOG3576|consen 111 SSSDQDSFTCRVCGKKFGLQRMLNRHL---KCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGV 171 (267)
T ss_pred CCCCCCeeeeehhhhhhhHHHHHHHHh---hhccHHHHHHHhhccCcccchhhhhhhhccccCc
Confidence 3455778999999521000 0000 0001225566666666666666666666666653
No 86
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.99 E-value=0.11 Score=68.94 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH-------hhhhHHhhhhhhhHHHHHHHHHHH
Q 048174 781 AKGALSIQTSWRGHRDFSYYKRL-------RKASVFSQSRWRGIAARREFRKLK 827 (1303)
Q Consensus 781 ~~AA~~IQ~~~Rg~~aRr~~~~~-------~kaav~IQ~~~R~~~aRkel~~lk 827 (1303)
.+.++.+|++.||+++|+.|.+. ..+++.||++.|.+.+|..|+.+.
T Consensus 592 ~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 592 KKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 34455556666666555544332 235566666666666666555443
No 87
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.96 E-value=1 Score=52.37 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEK-------RLKKLEETERRVYQLQDSLNRLLYC 992 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~-------l~~kl~e~E~~~~~Lq~el~~Le~k 992 (1303)
.+.++..++|.+.+++..+.....+.....++.....+... ...++..+|.....|+.++.+|+.-
T Consensus 209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777776666666666666555554444443333 3344455555555555555555443
No 88
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.94 E-value=0.56 Score=58.52 Aligned_cols=30 Identities=7% Similarity=0.235 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSAR 956 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~ 956 (1303)
.++.++|+++.+.+...+..+++..+..+.
T Consensus 350 ddk~~eLEKkrd~al~dvr~i~e~k~nve~ 379 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMDVRSIQEKKENVEE 379 (1265)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444443333333
No 89
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.94 E-value=1.7 Score=46.58 Aligned_cols=66 Identities=20% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMS 994 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~ 994 (1303)
+...|..++..|+.++=.-+.-+-..+..+.+.....+++..-+++.-.....|+.++..|++++.
T Consensus 124 ~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 124 RSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445544433333333333444444444444444455555555556666655555554
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.93 E-value=0.95 Score=49.67 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLK-KLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILR 1005 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~-kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~ 1005 (1303)
..++..+++++..|+-+.+.++.+...++++..++....+.... --....-++.-|+..+..|.+.+..-+.++..++.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666655555544443222 22223356677888888888888888888887776
Q ss_pred hccc
Q 048174 1006 SSST 1009 (1303)
Q Consensus 1006 q~~~ 1009 (1303)
..++
T Consensus 172 ~~nl 175 (201)
T PF13851_consen 172 AANL 175 (201)
T ss_pred HcCC
Confidence 5544
No 91
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.92 E-value=0.48 Score=48.41 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRSS 1007 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~ 1007 (1303)
+.+..+.++...++..+..++...+.....+...+ ..-+..-..|++++..++.++.+|..+|. +|-+|
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e----------~sw~~qk~~le~e~~~~~~r~~dL~~QN~-lLh~Q 127 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESE----------ASWEEQKEQLEKELSELEQRIEDLNEQNK-LLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34444444444444444444444444433333222 22345556777888888888888888888 66655
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.90 E-value=1.4 Score=52.00 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQ 983 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq 983 (1303)
++++.+..++..++..++..+..+.+++.++..++..++++..+..+.+..+..++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554444444444444444444444444
No 93
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.89 E-value=4.5 Score=46.34 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 957 KCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 957 ~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.+.+...+.+-+..+++..+.+-..|+.++.+|++-+++++...+
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 344444455556667777788888899999999999999998888
No 94
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.88 E-value=4.3 Score=47.56 Aligned_cols=12 Identities=8% Similarity=0.219 Sum_probs=4.9
Q ss_pred HHHHHHHH-HhhH
Q 048174 835 RGQEITES-QESQ 846 (1303)
Q Consensus 835 LE~kl~eL-~rLe 846 (1303)
+...+.++ .+++
T Consensus 80 l~~e~~~~r~k~e 92 (312)
T PF00038_consen 80 LKEELEDLRRKYE 92 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 33344444 4443
No 95
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.87 E-value=2.2 Score=53.42 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 975 TERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 975 ~E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
.+.++..|+.++...++.+..+-.
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444433
No 96
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.86 E-value=3.5 Score=47.57 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048174 862 CDITNKGIEVHVKECDTTDRAIEVYVKECD 891 (1303)
Q Consensus 862 ~~kL~~~ve~Le~qlee~e~~~~~le~e~~ 891 (1303)
+.+|+..+..|+.+.......++.+..|+.
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKV 166 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKV 166 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555555555444444333444444433
No 97
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.86 E-value=7.3 Score=54.17 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCM 993 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl 993 (1303)
+...++.+.+++...+............++.+..+++...+.....+...+....+++.++..|+..+
T Consensus 467 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 467 EKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555556655555555555555555555555555544444444444444445555555544444
No 98
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.85 E-value=7.2 Score=48.62 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLY 991 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~ 991 (1303)
-+..-|.+|+..|.+.+++...+..+.++++..++.+. ...+.++.+|..+..+++.
T Consensus 704 ~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~-------~~l~~r~~~le~e~r~~k~ 760 (961)
T KOG4673|consen 704 IQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEA-------DTLEGRANQLEVEIRELKR 760 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34455667777777776666666655555554444444 4444444444444444433
No 99
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=95.85 E-value=0.0024 Score=44.50 Aligned_cols=23 Identities=39% Similarity=0.933 Sum_probs=19.9
Q ss_pred cccCccccccCccccchhHHhhc
Q 048174 1116 YNCSFCRREFRSAQALGGHMNVH 1138 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~h 1138 (1303)
|.|++|++.|.+..+|..|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 78999999999999999999887
No 100
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=5.2 Score=49.34 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 852 IVDETSEVKECDITNKGIEVHVKECDTTDR 881 (1303)
Q Consensus 852 r~eee~~~~E~~kL~~~ve~Le~qlee~e~ 881 (1303)
+.+.+...++..+++.+++.|.+.+.+.+.
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333334444445555555555555444443
No 101
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.68 E-value=1.5 Score=46.90 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 945 QAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQ 999 (1303)
Q Consensus 945 eel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~E 999 (1303)
+.+.++.+..+.+++.+...+.+...+.+-.+..+..|+.++.+|+.++.....+
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 3333333344444444444444444444555566677777777777766555544
No 102
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.66 E-value=6.8 Score=54.42 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 940 LKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQL 1000 (1303)
Q Consensus 940 Le~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El 1000 (1303)
++..++..+............++.....+..+-...+.....++.++..++.++..++..+
T Consensus 474 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 474 ADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333444444334444444444444445555555555555444433
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.65 E-value=1.8 Score=44.62 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 859 VKECDITNKGIEVHVKECDTTDRAIEVYVKE 889 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e~~~~~le~e 889 (1303)
+.+.+.|+..+..|+.+|+..+...+.++.+
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~d 46 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILD 46 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455556666666666666555544444444
No 104
>PRK03918 chromosome segregation protein; Provisional
Probab=95.58 E-value=1.2 Score=59.64 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 939 KLKALLQAEKQRADDSARKCAEARVL 964 (1303)
Q Consensus 939 kLe~~leel~~~~~ele~~~~e~~~~ 964 (1303)
.+...++.+++.+..+++++..++..
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~ 329 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEER 329 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333
No 105
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.57 E-value=2.2 Score=52.92 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le 997 (1303)
+...+..+++|+.-++.....++..+..+.+++..+...+....+.+++.-.....++..+..|.+++.-+.
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445666677777777777777777777777777777777777766666666667777777777777776554
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.57 E-value=1.8 Score=50.65 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=4.7
Q ss_pred ccCHHHHHH
Q 048174 613 RKTFSEFLD 621 (1303)
Q Consensus 613 r~~~~eF~~ 621 (1303)
+++..+|++
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 445555554
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.45 E-value=1.8 Score=52.01 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 960 EARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 960 e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le 997 (1303)
+.++....+...+...+.+...|+..-.+|+..+..++
T Consensus 207 E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 207 ERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333444445555555555555555555555554
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.45 E-value=3 Score=46.70 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=9.6
Q ss_pred CCCccccCccccc
Q 048174 1112 PPKNYNCSFCRRE 1124 (1303)
Q Consensus 1112 ~~~~~~c~~c~~~ 1124 (1303)
+..+-.||+||+=
T Consensus 218 ~d~iv~CP~CgRI 230 (239)
T COG1579 218 KDEIVFCPYCGRI 230 (239)
T ss_pred CCCCccCCccchH
Confidence 3456789999973
No 109
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=11 Score=48.24 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILR 1005 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~ 1005 (1303)
......+.++...+...++.......+..+....++...+...+++++.+..+..+..++..+..+.+.+++|+. .|+
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e-~L~ 614 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELE-RLK 614 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345566777777788888888888888888888888888888889999999999999999999999999999998 665
No 110
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.35 E-value=3.9 Score=46.89 Aligned_cols=137 Identities=11% Similarity=0.056 Sum_probs=73.5
Q ss_pred HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccC
Q 048174 835 RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEP 913 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e 913 (1303)
|+.|+..+ +.=+--+..+..-+..+.|.+.|+.+.+.|..+|--.++-..+...+.+
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q---------------------- 130 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQ---------------------- 130 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHH----------------------
Confidence 55565555 3222112222222335566666666666666666665532222222211
Q ss_pred CCccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------HHHHHH
Q 048174 914 HPITGKIPCSNEEEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEE----TE-------RRVYQL 982 (1303)
Q Consensus 914 ~~~~~e~~~~~~~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e----~E-------~~~~~L 982 (1303)
..+.-+..+++|+.-|+.+++++.....|.+.+...+.+++.+...-..+ .+ +-++.=
T Consensus 131 -----------~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kR 199 (401)
T PF06785_consen 131 -----------HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKR 199 (401)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 13455666777777777777777777777777666665555553321111 11 113344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048174 983 QDSLNRLLYCMSEQFSQLKMIL 1004 (1303)
Q Consensus 983 q~el~~Le~kl~~le~El~~~l 1004 (1303)
|..+..|+.++.+|--|+.++|
T Consensus 200 Q~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 200 QAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777554
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.34 E-value=3 Score=53.38 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q 048174 859 VKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRA 896 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~ 896 (1303)
.++...|..+..+.++|++..+..+.++++++.+++.+
T Consensus 437 ~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~ 474 (980)
T KOG0980|consen 437 RQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQ 474 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444555555556666555555555554433333
No 112
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.32 E-value=5 Score=44.28 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=7.6
Q ss_pred hhHHHHHhhcccchhH
Q 048174 1056 NALQLIVQDLSATEIT 1071 (1303)
Q Consensus 1056 ~~~~l~v~~~s~~~~~ 1071 (1303)
.++.+++.+...+++.
T Consensus 230 r~~d~~~g~~pltp~a 245 (333)
T KOG1853|consen 230 RSEDVFMGDVPLTPDA 245 (333)
T ss_pred cccccccCCCCCCchh
Confidence 4455555544444433
No 113
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.31 E-value=5.5 Score=44.10 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKL------------KALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCM 993 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kL------------e~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl 993 (1303)
...+...|..||++| +.++.--++..+++.+...++-+-++++.+..+...+.+--||+++...+.++
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 455666666666655 33333333334444444555555555555556666666677777777777777
Q ss_pred HHHHHHHHHHHh
Q 048174 994 SEQFSQLKMILR 1005 (1303)
Q Consensus 994 ~~le~El~~~l~ 1005 (1303)
..++..+. .++
T Consensus 295 q~l~k~~~-q~s 305 (330)
T KOG2991|consen 295 QRLKKGLE-QVS 305 (330)
T ss_pred HHHHHHHH-HHH
Confidence 77777666 443
No 114
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.30 E-value=0.96 Score=55.44 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSE 966 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~ 966 (1303)
.+.++.+..|..+|+..+.+++..++.+.++.-+++.+.+
T Consensus 331 ~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 331 GEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677777788888888887777777777776666554443
No 115
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.28 E-value=1.9 Score=49.02 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLE---------------------ETERRVYQLQDSLNR 988 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~---------------------e~E~~~~~Lq~el~~ 988 (1303)
++.|...+.-|-+.+...+.+...++.++...+..+.+..--++ +.+..+.+--..=.+
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554444444333221111 222222222233344
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 048174 989 LLYCMSEQFSQLKMILRSSS 1008 (1303)
Q Consensus 989 Le~kl~~le~El~~~l~q~~ 1008 (1303)
+++++..+++|+. +|+||-
T Consensus 219 ~eERL~QlqsEN~-LLrQQL 237 (305)
T PF14915_consen 219 LEERLSQLQSENM-LLRQQL 237 (305)
T ss_pred HHHHHHHHHHHHH-HHHHHH
Confidence 5666677777777 776663
No 116
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.27 E-value=1.6 Score=61.10 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.5
Q ss_pred eEEEEeCCcCCCchhhHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIM 114 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~ 114 (1303)
...+|+|.+|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999998776654
No 117
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.27 E-value=2.8 Score=43.22 Aligned_cols=8 Identities=0% Similarity=-0.022 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 048174 835 RGQEITES 842 (1303)
Q Consensus 835 LE~kl~eL 842 (1303)
|+.++..|
T Consensus 22 le~~v~~L 29 (140)
T PF10473_consen 22 LEDHVESL 29 (140)
T ss_pred HHHHHHHH
Confidence 55555555
No 118
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.25 E-value=2.2 Score=52.86 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 964 LSEKRLKKLEETERRVYQLQDSLNRLLYCM 993 (1303)
Q Consensus 964 ~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl 993 (1303)
.+..+..++.++|..+..|.+.+..|+.++
T Consensus 304 ~i~~Lr~klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 304 RISGLRAKLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred cccchhhhhccccccChhHHHHHHHHHhhh
Confidence 333344567777766666666666666554
No 119
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.20 E-value=0.0062 Score=42.96 Aligned_cols=25 Identities=40% Similarity=0.794 Sum_probs=23.1
Q ss_pred cccCccccccCccccchhHHhhcch
Q 048174 1116 YNCSFCRREFRSAQALGGHMNVHRR 1140 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~h~~ 1140 (1303)
|+|+.|++.|.+...|..|++.|..
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~~ 25 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHXX 25 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhcc
Confidence 7899999999999999999998863
No 120
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.17 E-value=1.7 Score=48.55 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=5.0
Q ss_pred HHhhcchh
Q 048174 1134 HMNVHRRD 1141 (1303)
Q Consensus 1134 h~~~h~~~ 1141 (1303)
|+.+||.-
T Consensus 201 ~qqIHRNA 208 (230)
T PF10146_consen 201 HQQIHRNA 208 (230)
T ss_pred HHHHhcCC
Confidence 66667654
No 121
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.11 E-value=7.4 Score=50.67 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=9.9
Q ss_pred ccccccCCCCCHHHH
Q 048174 378 IYGFESFESNSFEQF 392 (1303)
Q Consensus 378 I~GFE~f~~NsfEQl 392 (1303)
|-|=+.+..|+-+++
T Consensus 31 ~lg~~p~s~ng~e~i 45 (1195)
T KOG4643|consen 31 MLGSTPSSSNGEEAI 45 (1195)
T ss_pred hhccCccccchHHHH
Confidence 566666667776664
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.10 E-value=0.16 Score=55.32 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYC 992 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~k 992 (1303)
...+..|+.++..|+..+.+++..+.+..+.+..+++++..+.-.+...|.+...|+.+...|=++
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555444444444444444444444444444444
No 123
>PTZ00014 myosin-A; Provisional
Probab=95.05 E-value=0.049 Score=71.12 Aligned_cols=42 Identities=12% Similarity=-0.080 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhHHhhhhhhhHHHHHH
Q 048174 781 AKGALSIQTSWRGHRDFSYYKRLRKASVFSQSRWRGIAARRE 822 (1303)
Q Consensus 781 ~~AA~~IQ~~~Rg~~aRr~~~~~~kaav~IQ~~~R~~~aRke 822 (1303)
...+..||++||||++|+.|++.+.++++||++||+++++++
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999998865
No 124
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.01 E-value=9.4 Score=50.26 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048174 857 SEVKECDITNKGIEVHVKECDTTDRAIEVYVKECD 891 (1303)
Q Consensus 857 ~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~ 891 (1303)
+.+.....+...++.++.++.+.....+..+++.+
T Consensus 314 ~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~ 348 (1141)
T KOG0018|consen 314 TAKKDYRALKETIERLEKELKAVEGAKEEFEKEIE 348 (1141)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777788888888888777777776655
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.99 E-value=0.6 Score=51.98 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+.+.|+.+...+....+.+++...++.-++.-....+.-+|..+...+..+..|+..++.++.|+.
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333334444445555555555556666666666555
No 126
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.94 E-value=0.58 Score=52.98 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRSS 1007 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~ 1007 (1303)
.+...+..++..|+.........-..++.++.+.......+.......+.....|+.++...+........++..++..+
T Consensus 54 ~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 54 QKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555666555555555556666666666666666666666777777888888877777777677666455444
No 127
>PRK03918 chromosome segregation protein; Provisional
Probab=94.91 E-value=11 Score=50.55 Aligned_cols=30 Identities=10% Similarity=0.345 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARK 957 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~ 957 (1303)
+.++.+.++...++++++.++..+.+.+..
T Consensus 307 ~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~ 336 (880)
T PRK03918 307 DELREIEKRLSRLEEEINGIEERIKELEEK 336 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555444444444333
No 128
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.87 E-value=4.1 Score=48.22 Aligned_cols=15 Identities=7% Similarity=-0.225 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 048174 864 ITNKGIEVHVKECDT 878 (1303)
Q Consensus 864 kL~~~ve~Le~qlee 878 (1303)
.++.+++.|+.+..+
T Consensus 301 nlqmr~qqleeente 315 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTE 315 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 129
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.87 E-value=0.026 Score=40.76 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhc
Q 048174 727 EAAAVKIQKNSRTMMTRKAYS 747 (1303)
Q Consensus 727 ~~AAi~IQ~~~Rg~~aRr~~~ 747 (1303)
..+|++||++||||++|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 468899999999999999884
No 130
>PRK09039 hypothetical protein; Validated
Probab=94.86 E-value=1.9 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRAD 952 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ 952 (1303)
+..|+.+++.|+.++..++..++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 131
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.79 E-value=2.5 Score=50.47 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 048174 342 GLAKTIYSRLFDWLV 356 (1303)
Q Consensus 342 alak~LY~~LF~wiV 356 (1303)
.|++.+|+-|=+|+-
T Consensus 51 Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 51 TLSEDIYSTLDNLLG 65 (527)
T ss_pred hhhHHHHhhhhhccC
Confidence 577777777766653
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.79 E-value=11 Score=44.75 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQ----LQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~----Lq~el~~Le~kl~~le~ 998 (1303)
.++..+..+++..+..+++++.++..++.++.++.....++...+.+++..... -..++..|+.++..|+.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344444444444444444444454444444444444444444444444433322 23455555555555554
No 133
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.78 E-value=1.9 Score=46.30 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048174 859 VKECDITNKGIEVHVKECDTTD 880 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e 880 (1303)
...+.+|..++.+|..++....
T Consensus 35 ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 35 EEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544443
No 134
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=94.78 E-value=0.0066 Score=43.86 Aligned_cols=15 Identities=33% Similarity=1.077 Sum_probs=13.3
Q ss_pred CCccccCccccccCc
Q 048174 1113 PKNYNCSFCRREFRS 1127 (1303)
Q Consensus 1113 ~~~~~c~~c~~~f~~ 1127 (1303)
+|||+|++|+|.|.+
T Consensus 12 ~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 12 EKPYKCPYCGKSFSN 26 (26)
T ss_dssp SSSEEESSSSEEESS
T ss_pred CCCCCCCCCcCeeCc
Confidence 389999999999974
No 135
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.77 E-value=1.4 Score=47.91 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 942 ALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQ 999 (1303)
Q Consensus 942 ~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~E 999 (1303)
..++.+.....++.++..++.++..+......+....+.+++.....+++++.++++.
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444455555555555555554443
No 136
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=4.1 Score=52.68 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048174 933 LSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRSSS 1008 (1303)
Q Consensus 933 L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~~ 1008 (1303)
|+-++..|+++++--.+.-......+.++++..++..+++...+-+++.|.++-..+..++..++.+.+.++.-|+
T Consensus 305 lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg 380 (1200)
T KOG0964|consen 305 LELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQG 380 (1200)
T ss_pred hhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444555444444444444555667777777777778888888888888888888888888777775554444
No 137
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.75 E-value=1.5 Score=44.09 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 952 DDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 952 ~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le 997 (1303)
..++.++.+++..+..+.+-+.+-...+..|+..+..|++-+..+-
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555666666666655554443
No 138
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.66 E-value=0.6 Score=59.06 Aligned_cols=17 Identities=41% Similarity=0.821 Sum_probs=11.2
Q ss_pred ccCCCcchhhhhhhhhccc
Q 048174 492 HYAGEVHYQSDLFLDKNKD 510 (1303)
Q Consensus 492 HyaG~V~Y~~~gflekN~D 510 (1303)
+|.|++-|+. ||=-|-.
T Consensus 79 Gy~~digyq~--fLYp~e~ 95 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPNEK 95 (594)
T ss_pred CCCCCCcchh--hccCChH
Confidence 5789999963 6644443
No 139
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.65 E-value=16 Score=48.17 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=20.3
Q ss_pred HHhhcCceeeeccC-eeEeeCCCCCCCCCCcHHHHHHh
Q 048174 28 TRYEINEIYTYTGN-ILIALNPFQPLSHLYDAYMMERY 64 (1303)
Q Consensus 28 ~Ry~~~~iYT~~G~-iLiavNP~~~l~~ly~~~~~~~y 64 (1303)
.||..-.+-| -|. |+=++-|--.+++-|++++.+.-
T Consensus 192 SrYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~L 228 (1758)
T KOG0994|consen 192 SRYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELL 228 (1758)
T ss_pred cccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHh
Confidence 3454444422 333 45566676667777777765554
No 140
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.62 E-value=2.7 Score=50.07 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccCCCccCcccCchhHHHHHHHHHHHH
Q 048174 858 EVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEPHPITGKIPCSNEEEEKIENLSAEV 937 (1303)
Q Consensus 858 ~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e~~~~~e~~~~~~~~~ki~~L~~E~ 937 (1303)
++....+++.-+..|+...+++-..++++..+++..+.+++.+++..+..+..+.-. . -..++++.+..|.
T Consensus 307 l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq----~-----Is~e~fe~mn~Er 377 (622)
T COG5185 307 LKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ----G-----ISTEQFELMNQER 377 (622)
T ss_pred HhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc----C-----CCHHHHHHHHHHH
Confidence 455556777777777777777777777777777766666666666655555422211 1 1346677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 938 EKLKALLQAEKQRADDSARKCAEARVL 964 (1303)
Q Consensus 938 ~kLe~~leel~~~~~ele~~~~e~~~~ 964 (1303)
.+|-.+++....+.+++.+...+.+.+
T Consensus 378 e~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 378 EKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 777777777777766666655444433
No 141
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.60 E-value=9.7 Score=44.58 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 933 LSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLK----KLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 933 L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~----kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+..|+..++..+..+..++..++.+...++..+.++.. .....+..+..|+.++..++..+..+..+.+
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333333222 2222333444444444444444444444433
No 142
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.59 E-value=0.024 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.4
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999875
No 143
>PTZ00121 MAEBL; Provisional
Probab=94.58 E-value=24 Score=47.90 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=23.4
Q ss_pred CccCCCCCChHHHHHHHHHHhhcCceeeeccC
Q 048174 10 DMTKLSYLHEPGVLHNLATRYEINEIYTYTGN 41 (1303)
Q Consensus 10 Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~ 41 (1303)
|||.=..+++..|+.....|......|||-|.
T Consensus 163 dmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 163 DMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 67766677776777777777777778888764
No 144
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.57 E-value=2.1 Score=54.48 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERR-------VYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~-------~~~Lq~el~~Le~kl~~le~ 998 (1303)
+...+..+.+++.+++..+.++...+.+....+.++++.++++.+++++.+.. +..|+..-...++++..+..
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRN 425 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555544444444444444444444444433 33344444444444444444
Q ss_pred HHH
Q 048174 999 QLK 1001 (1303)
Q Consensus 999 El~ 1001 (1303)
.+.
T Consensus 426 ~L~ 428 (569)
T PRK04778 426 KLH 428 (569)
T ss_pred HHH
Confidence 444
No 145
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.55 E-value=4.2 Score=44.43 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRADDSARKCAEARVL----SEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~----~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
.+.|..++..++..+++...++..+++++.-..+. +....++..++...+..|+.++..|..++.+.+.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555554333222 2223335566666666666666666666665543
No 146
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.55 E-value=18 Score=45.44 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 960 EARVLSEKRLKKLEETERRVYQLQDSLN 987 (1303)
Q Consensus 960 e~~~~~~~l~~kl~e~E~~~~~Lq~el~ 987 (1303)
-++.++.+++..+...|.+...|-+++-
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~ 636 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEELIQQVP 636 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555566666666666555555443
No 147
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.52 E-value=2.8 Score=55.44 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 931 ENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQD 984 (1303)
Q Consensus 931 ~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~ 984 (1303)
..|.++.++++...+.....-.+......+++..+..+....++......++++
T Consensus 598 ~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 598 SKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 445555555655555555555555555555555555555444444444444433
No 148
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.52 E-value=0.035 Score=40.07 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 048174 781 AKGALSIQTSWRGHRDFSYY 800 (1303)
Q Consensus 781 ~~AA~~IQ~~~Rg~~aRr~~ 800 (1303)
.++|+.||+.||||++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46888899999999988887
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.49 E-value=6.6 Score=50.08 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=27.5
Q ss_pred HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 835 RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECDTTDRAIEVYV 887 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le 887 (1303)
++.++..| ..++.|...+.. ......++...+..++.+.......++.+.
T Consensus 287 i~~~Id~Lyd~lekE~~A~~~---vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 287 IQERIDQLYDILEREVKARKY---VEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888 777766665555 333334444444444444444444444433
No 150
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.47 E-value=7.4 Score=51.42 Aligned_cols=15 Identities=7% Similarity=-0.301 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhHHH
Q 048174 782 KGALSIQTSWRGHRD 796 (1303)
Q Consensus 782 ~AA~~IQ~~~Rg~~a 796 (1303)
.|+.........|..
T Consensus 168 ~Aa~iaN~la~~Y~~ 182 (754)
T TIGR01005 168 LAAAIPDAIAAAYIA 182 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 151
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.45 E-value=1.1 Score=56.75 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=20.2
Q ss_pred HHHhhCCCcccCHHHHHHhhcccccchhccccchHHHHHHHHHhcC
Q 048174 604 RVKCAGYPTRKTFSEFLDRFGILLPEIRKQNYDEKIACKWILEKMD 649 (1303)
Q Consensus 604 ri~~~Gyp~r~~~~eF~~Ry~~L~~~~~~~~~~~~~~~~~il~~~~ 649 (1303)
.+...||+--+.|..|+ .|+. .+.+..+..|++.+.
T Consensus 74 ~~k~lGy~~digyq~fL------Yp~e----~~~R~ll~fLiekLP 109 (594)
T PF05667_consen 74 ACKELGYRGDIGYQTFL------YPNE----KDLRRLLMFLIEKLP 109 (594)
T ss_pred HHHHcCCCCCCcchhhc------cCCh----HHHHHHHHHHHHHCC
Confidence 34566777777776654 3331 244555556666553
No 152
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.42 E-value=20 Score=50.60 Aligned_cols=43 Identities=7% Similarity=-0.024 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 959 AEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 959 ~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
..++.+..++..+...+......+..++..|+.++..++.++.
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555556666666666666666666666663
No 153
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.34 E-value=13 Score=44.92 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=9.7
Q ss_pred CCCchhHHHHHhhcccc
Q 048174 1052 SFKPNALQLIVQDLSAT 1068 (1303)
Q Consensus 1052 ~~~~~~~~l~v~~~s~~ 1068 (1303)
|-.-.-+..|++...++
T Consensus 302 PV~G~il~rFG~~~~gg 318 (420)
T COG4942 302 PVTGRILRRFGQADGGG 318 (420)
T ss_pred CCCCcHHHHhcccCCCC
Confidence 34555677777744443
No 154
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.16 E-value=1.5 Score=58.75 Aligned_cols=141 Identities=21% Similarity=0.180 Sum_probs=88.3
Q ss_pred HHHhhhhhhhhhhhhhhhhhhHH-------HHHHhhccccceeccccccchh-----hhHHHHHHHHHHHHHHHhhcchh
Q 048174 683 EVIQSQHRRRVTQKHYITLVQAA-------VCIQSSCRGILARRYCKVKKKE-----AAAVKIQKNSRTMMTRKAYSNVK 750 (1303)
Q Consensus 683 ~~IQ~~~R~~~~Rk~y~~~r~aa-------i~IQa~~Rg~laRk~~~~~r~~-----~AAi~IQ~~~Rg~~aRr~~~k~r 750 (1303)
..||+.-+.+..++++..++..+ ...++..+|.+.|......... ..-+..|..+|+...+..--++-
T Consensus 451 ~~mq~~~~~~~~~kK~~s~~~~iNk~k~s~~k~~~~~~~~l~~~~~~~~~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~ 530 (1401)
T KOG2128|consen 451 PMMQKFNVDYVEAKKVASLNVKINKAKGSEMKWLAYIYGNLVREAKKWLLEELHFEYSSLISLQALVRGIVLRSALFSLY 530 (1401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhccccHHHHHHHHHHhhHHHHhhhhHHHhhHHHHh
Confidence 34555555555555554443332 4677888888877655444432 22334788888888777632221
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hHHHHHHHHHHHhhHHH----HHHHHHHhhhhHHhhhhhhh
Q 048174 751 -----AAAIVLQAWLRARAAVRAMAALSELRH----RK-HAKGALSIQTSWRGHRD----FSYYKRLRKASVFSQSRWRG 816 (1303)
Q Consensus 751 -----~aai~IQ~~~R~~~~~R~~~arr~~~~----~~-~~~AA~~IQ~~~Rg~~a----Rr~~~~~~kaav~IQ~~~R~ 816 (1303)
.-..++|+. .||...|.+++. ++ ..-....||..|||++. ...+....+.++.+|++.|+
T Consensus 531 ~s~~~s~~~~~qa~------~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~ 604 (1401)
T KOG2128|consen 531 PSLGKSEKLRIQAS------ERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRG 604 (1401)
T ss_pred hhhccccchhhhhh------ccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHH
Confidence 223345884 444444444322 22 34577889999999983 34455667899999999999
Q ss_pred HHHHHHHHHHHHH
Q 048174 817 IAARREFRKLKMT 829 (1303)
Q Consensus 817 ~~aRkel~~lk~a 829 (1303)
.++|+.+.+..+-
T Consensus 605 ~lsrk~~~~~~q~ 617 (1401)
T KOG2128|consen 605 ALSRKKYSRKLQY 617 (1401)
T ss_pred HHHHhhHHHHHHH
Confidence 9999988765543
No 155
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.14 E-value=2.6 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=16.0
Q ss_pred ccCCCeeEEecCCCCCCCCCcC
Q 048174 564 NSTEPHYIRCVKPNNELKPVIL 585 (1303)
Q Consensus 564 ~~t~~hfIrCIkPN~~~~p~~f 585 (1303)
..|.++||.|-+|.....|.-.
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~PV 442 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNPV 442 (717)
T ss_pred CCcceEEEeccCCCCCCCCCCc
Confidence 3466899999999777655443
No 156
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.14 E-value=4.4 Score=43.49 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccCCCccCcccCchhHHHHHHHHHHHHH
Q 048174 859 VKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEPHPITGKIPCSNEEEEKIENLSAEVE 938 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e~~~~~e~~~~~~~~~ki~~L~~E~~ 938 (1303)
.....+++.+++.++.++.+++---++.....+...+++.-..-+++....- ......++..|..+..
T Consensus 52 enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eer------------aE~~Es~~~eLeEe~~ 119 (205)
T KOG1003|consen 52 ENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEER------------AEAAESQSEELEEDLR 119 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 3344566677777777777775444444433333333332222222221110 0013455666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 939 KLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 939 kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
-+...+..+....+....+....+..+..+..++.+.+.+-......+..|+..+.+|++.+.
T Consensus 120 ~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 120 ILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 666666777666666666666666677777777777777777777777777777777777665
No 157
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=3.9 Score=49.68 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARK---------------------CAEARVLSEKRLKKLEETERRVYQLQDS 985 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~---------------------~~e~~~~~~~l~~kl~e~E~~~~~Lq~e 985 (1303)
..+|-+|+.++..+++.+...+..++.+++. +++.+-...++...+.++|.++-.||+.
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4566666666666666666555555533332 2222222233444566666666666666
Q ss_pred HHHHHH----------HHHHHHHHHHHHHhhcccCCCCC
Q 048174 986 LNRLLY----------CMSEQFSQLKMILRSSSTSTSTS 1014 (1303)
Q Consensus 986 l~~Le~----------kl~~le~El~~~l~q~~~~~s~~ 1014 (1303)
+..|+. .+++|+++.. +|.++..-.-..
T Consensus 186 Vs~LR~sQVEyEglkheikRleEe~e-lln~q~ee~~~L 223 (772)
T KOG0999|consen 186 VSNLRQSQVEYEGLKHEIKRLEEETE-LLNSQLEEAIRL 223 (772)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 666543 3466677776 777765554443
No 158
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.06 E-value=0.62 Score=50.85 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMIL 1004 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l 1004 (1303)
.++..+..+.......+.+++..+..++.++..++.++.+..+..+.+..++..|+-++..+++++..++.|+..++
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555566666666677777777777777777777777533
No 159
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.05 E-value=23 Score=44.89 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048174 982 LQDSLNRLLYCMSEQFSQLKMIL 1004 (1303)
Q Consensus 982 Lq~el~~Le~kl~~le~El~~~l 1004 (1303)
.+.+..+|..+|..++....++|
T Consensus 637 ~~~e~~rl~~rlqelerdkNl~l 659 (739)
T PF07111_consen 637 RKEEGQRLTQRLQELERDKNLML 659 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Confidence 44556667777777777666444
No 160
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.00 E-value=15 Score=42.39 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 970 KKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 970 ~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+.+++...++..|+.++.+++.+-+.+.+||-
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEme 276 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEME 276 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888899999998888888888887
No 161
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.91 E-value=21 Score=47.84 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.8
Q ss_pred chhHHHHHHHHh
Q 048174 510 DYVVAEHQDLLS 521 (1303)
Q Consensus 510 D~l~~~~~~ll~ 521 (1303)
|+++++++.-+.
T Consensus 241 DYISPEvLqs~~ 252 (1317)
T KOG0612|consen 241 DYISPEVLQSQG 252 (1317)
T ss_pred CccCHHHHHhhc
Confidence 455555544443
No 162
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.90 E-value=4.1 Score=48.24 Aligned_cols=22 Identities=5% Similarity=-0.114 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048174 859 VKECDITNKGIEVHVKECDTTD 880 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e 880 (1303)
.+|+..|..+...|+++..+.+
T Consensus 249 kqEnlqLvhR~h~LEEq~reqE 270 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQE 270 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444445544444444444443
No 163
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.89 E-value=13 Score=47.15 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSE 995 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~ 995 (1303)
..++.|..+.+++++++++++..+--++.-.++. +.....|.+++.+.+.|...+..++.++++
T Consensus 379 ~elqsL~~l~aerqeQidelKn~if~~e~~~~dh----e~~kneL~~a~ekld~mgthl~mad~Q~s~ 442 (1265)
T KOG0976|consen 379 EELQSLLELQAERQEQIDELKNHIFRLEQGKKDH----EAAKNELQEALEKLDLMGTHLSMADYQLSN 442 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchh----HHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4455555555555555555555554433322222 222224555666666777777777766644
No 164
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=9.2 Score=43.43 Aligned_cols=27 Identities=26% Similarity=0.152 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 858 EVKECDITNKGIEVHVKECDTTDRAIE 884 (1303)
Q Consensus 858 ~~~E~~kL~~~ve~Le~qlee~e~~~~ 884 (1303)
.+.++.+++.++..++.++++.+..+.
T Consensus 71 ~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 71 LQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666654433
No 165
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=93.86 E-value=0.041 Score=58.24 Aligned_cols=73 Identities=16% Similarity=0.360 Sum_probs=51.2
Q ss_pred CCchhHHHHHhhcccchhHHhhhccccccccccccceecCCCc-----------cCCccCCCCCCCCcCCCCCccccCcc
Q 048174 1053 FKPNALQLIVQDLSATEITAVLMNKKEVSMEWVKEKWECEKCS-----------CSEAQHGQSSCGLIVWPPKNYNCSFC 1121 (1303)
Q Consensus 1053 ~~~~~~~l~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-----------~~~~~~~~~~~~~~~~~~~~~~c~~c 1121 (1303)
.+.=+.++|+.-|..-+.-+.... - +..-++|-|.-|| |.+.|+|- |||+|+.|
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~k---c--h~~vkr~lct~cgkgfndtfdlkrh~rthtgv----------rpykc~~c 179 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLK---C--HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGV----------RPYKCSLC 179 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhh---h--ccHHHHHHHhhccCcccchhhhhhhhccccCc----------cccchhhh
Confidence 344467788887776654444333 2 2234579999996 34444444 99999999
Q ss_pred ccccCccccchhH-Hhhcch
Q 048174 1122 RREFRSAQALGGH-MNVHRR 1140 (1303)
Q Consensus 1122 ~~~f~~~~~l~~h-~~~h~~ 1140 (1303)
+|.|.....|-.| +.+|.-
T Consensus 180 ~kaftqrcsleshl~kvhgv 199 (267)
T KOG3576|consen 180 EKAFTQRCSLESHLKKVHGV 199 (267)
T ss_pred hHHHHhhccHHHHHHHHcCc
Confidence 9999999999999 467763
No 166
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.83 E-value=3.2 Score=52.57 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+..+....|..+++.+++++..+++.++-++...+++..-+.-.+...+.++.+|++-...|+..|.++-..+.
T Consensus 487 ~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls 560 (861)
T PF15254_consen 487 ENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLS 560 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444556677777777777777777777777777776666666666667777777777777777766555444
No 167
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.73 E-value=1.1 Score=56.31 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 964 LSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 964 ~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.-.++.++++......+..+.++...++++..++.+.+
T Consensus 475 kA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~ 512 (1102)
T KOG1924|consen 475 KAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQ 512 (1102)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhh
Confidence 33445566666667777777777777788887777766
No 168
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.68 E-value=2 Score=48.06 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+..|..|+..|-...+.++...+.+..++.-.+..+.-+...+......+..|..++..++..+.+.+..+.
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444444444444444445555555555666666677777666665555444
No 169
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=93.62 E-value=0.018 Score=40.95 Aligned_cols=24 Identities=25% Similarity=0.772 Sum_probs=22.5
Q ss_pred cccCccccccCccccchhHHhhcc
Q 048174 1116 YNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
|.|..|++.|.+..+|..|++.|+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~ 24 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKK 24 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCC
Confidence 689999999999999999999875
No 170
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=93.54 E-value=15 Score=43.64 Aligned_cols=18 Identities=11% Similarity=0.541 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048174 972 LEETERRVYQLQDSLNRL 989 (1303)
Q Consensus 972 l~e~E~~~~~Lq~el~~L 989 (1303)
+.+....+..+++.+.++
T Consensus 392 lDdVD~kIleak~al~ev 409 (575)
T KOG4403|consen 392 LDDVDHKILEAKSALSEV 409 (575)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 444455555555554443
No 171
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.52 E-value=28 Score=44.13 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 048174 781 AKGALSIQTSWRGHRDFSYYK 801 (1303)
Q Consensus 781 ~~AA~~IQ~~~Rg~~aRr~~~ 801 (1303)
.++.++.++.+..-..|++..
T Consensus 86 ~k~~~i~~r~~~~~~dr~~~~ 106 (716)
T KOG4593|consen 86 TKAQSILARNYEAEVDRKHKL 106 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666777776666666643
No 172
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.48 E-value=6.3 Score=51.49 Aligned_cols=8 Identities=0% Similarity=0.027 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 048174 835 RGQEITES 842 (1303)
Q Consensus 835 LE~kl~eL 842 (1303)
|...+..|
T Consensus 341 Lqsdve~L 348 (775)
T PF10174_consen 341 LQSDVEAL 348 (775)
T ss_pred HHHhHHHH
Confidence 44444444
No 173
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.45 E-value=5.2 Score=46.25 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMS 994 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~ 994 (1303)
++...+.++..|..++-+++++++..--+.+++...+......-.+|+.++..|+++..
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444445555555555543
No 174
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.45 E-value=19 Score=44.42 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=4.1
Q ss_pred HHHHHhhccc
Q 048174 1000 LKMILRSSST 1009 (1303)
Q Consensus 1000 l~~~l~q~~~ 1009 (1303)
+.++|...++
T Consensus 210 LerILE~sGL 219 (475)
T PRK10361 210 LTRVLEASGL 219 (475)
T ss_pred HHHHHHHhCC
Confidence 3334444433
No 175
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.34 E-value=0.054 Score=54.34 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=21.2
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35679999999999999999999988764
No 176
>PHA02768 hypothetical protein; Provisional
Probab=93.32 E-value=0.028 Score=47.96 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.9
Q ss_pred CccccCccccccCccccch
Q 048174 1114 KNYNCSFCRREFRSAQALG 1132 (1303)
Q Consensus 1114 ~~~~c~~c~~~f~~~~~l~ 1132 (1303)
++|+|..|+|.|.....|.
T Consensus 30 k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 30 TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred CcccCCcccceecccceeE
Confidence 6899999999999888775
No 177
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.25 E-value=13 Score=45.86 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048174 976 ERRVYQLQDSLNRLLYCMSEQ 996 (1303)
Q Consensus 976 E~~~~~Lq~el~~Le~kl~~l 996 (1303)
+..+..|+.++...+..+..+
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAA 361 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444433
No 178
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.23 E-value=6.8 Score=43.90 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 931 ENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEK 967 (1303)
Q Consensus 931 ~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~ 967 (1303)
+.|..|....-.+|......+..+|..++..+.+..+
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444333
No 179
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.21 E-value=10 Score=47.85 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccCC-CccCcccCchhHHHHHHHHHHHHHHHH
Q 048174 863 DITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEPH-PITGKIPCSNEEEEKIENLSAEVEKLK 941 (1303)
Q Consensus 863 ~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e~-~~~~e~~~~~~~~~ki~~L~~E~~kLe 941 (1303)
..+...+.....+|++.+..++.+..+...+...+..+..++..++..+... ..... ....+..|+.++.+++
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~------a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE------ASSEVSSLEAELNKTR 350 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHhhHHHHHHHHH
Confidence 3444455666666666666666666665555555555566666555544433 11111 2334444555555554
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 942 ALLQAEKQR-------ADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 942 ~~leel~~~-------~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.+++..... ..++...+.++..+.+............+..++.++......+..++..+.
T Consensus 351 ~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~ 417 (522)
T PF05701_consen 351 SELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLE 417 (522)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444332222 223333444444444443334444444444444444444444444444443
No 180
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.13 E-value=4.7 Score=46.64 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 925 EEEEKIENLSAEVEKLKALLQAEKQRADDSARK 957 (1303)
Q Consensus 925 ~~~~ki~~L~~E~~kLe~~leel~~~~~ele~~ 957 (1303)
....++..|+.||..|+.+...|.......|.+
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 457888889999999988888777555544333
No 181
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.13 E-value=9.3 Score=39.09 Aligned_cols=67 Identities=25% Similarity=0.344 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSE 995 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~ 995 (1303)
..+..+.+..++..|+...+..+..+...+..-...+ ..+.+.+.+.+.++..|..+..-|-++|..
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk---~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESEASWEEQK---EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777777777776666544433 334455556666666666666666655543
No 182
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.11 E-value=5.8 Score=48.25 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 933 LSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRL-KKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 933 L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~-~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.+.+...++.++.+++..+.+++.++.+++....... ....+.+.....++.++..++.++..++..+.
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443333322 12333344555666666666666665555444
No 183
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.11 E-value=22 Score=41.74 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 048174 985 SLNRLLYCMSEQ 996 (1303)
Q Consensus 985 el~~Le~kl~~l 996 (1303)
++..|+.++..+
T Consensus 272 Ei~~Lk~~~~~L 283 (312)
T smart00787 272 EIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 184
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=93.11 E-value=20 Score=41.04 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=12.5
Q ss_pred CCCCchhHHHHHhhcccchhH
Q 048174 1051 SSFKPNALQLIVQDLSATEIT 1071 (1303)
Q Consensus 1051 s~~~~~~~~l~v~~~s~~~~~ 1071 (1303)
+.|+|+++.+...+|-.+-|+
T Consensus 259 ~~p~p~~~~~~~~~~~dds~~ 279 (426)
T KOG2008|consen 259 SKPEPDAISVASEAFEDDSCS 279 (426)
T ss_pred CCCCCchhhhhhhhcccchhh
Confidence 445666777777766555333
No 185
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.03 E-value=0.063 Score=53.38 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999996
No 186
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.01 E-value=32 Score=48.50 Aligned_cols=22 Identities=18% Similarity=0.381 Sum_probs=11.7
Q ss_pred hHhhHhhHHHHHHHHccCCCee
Q 048174 549 GSRFKLQLQQLMDTLNSTEPHY 570 (1303)
Q Consensus 549 ~~~fk~sL~~Lm~~L~~t~~hf 570 (1303)
.......+.+|-..|....+.|
T Consensus 867 ~~~le~k~~eL~k~l~~~~~~~ 888 (1822)
T KOG4674|consen 867 IAKLEIKLSELEKRLKSAKTQL 888 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455566666666554443
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.72 Score=56.74 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEAR 962 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~ 962 (1303)
.++..+..++..|+..+.+....+++++.++.+++
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666665555555555554444
No 188
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.80 E-value=0.073 Score=56.87 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
+.|+|+|.||||||+.++.|...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999887765
No 189
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.77 E-value=0.13 Score=51.48 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=25.9
Q ss_pred HcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 89 NEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 89 ~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.......|+|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567999999999999999999998875
No 190
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.76 E-value=20 Score=43.24 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 858 EVKECDITNKGIEVHVKECDTTDRAIEVYVKE 889 (1303)
Q Consensus 858 ~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e 889 (1303)
+.++..++...++.|++.+.++.....+++.-
T Consensus 286 ~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~ 317 (622)
T COG5185 286 KIQEAMKISQKIKTLREKWRALKSDSNKYENY 317 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555566666666666666665554444433
No 191
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.75 E-value=3.8 Score=44.44 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 048174 978 RVYQLQDSLNR 988 (1303)
Q Consensus 978 ~~~~Lq~el~~ 988 (1303)
...++...+.+
T Consensus 173 ~~~~l~~~~~~ 183 (191)
T PF04156_consen 173 NLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 192
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.66 E-value=24 Score=40.94 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=24.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 967 KRLKKLEETE-RRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 967 ~l~~kl~e~E-~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
++.-.++..+ ..++.|++.+..|...-..|+..+.
T Consensus 167 dlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 167 DLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333344333 6788888888888888888887666
No 193
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.63 E-value=27 Score=41.44 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCA 959 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~ 959 (1303)
+.-..+..-+.+|+.+++.++..+...+++..
T Consensus 246 D~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 246 DEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777776666543
No 194
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.62 E-value=1.3 Score=51.87 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLK-------KLEETERRVYQLQDSLNRLLYCMSEQFSQL 1000 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~-------kl~e~E~~~~~Lq~el~~Le~kl~~le~El 1000 (1303)
++++.+++|...|.++++++++..+++++++..++.+..++.+ .....+....+++++..+++.++.....++
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333333 333333444455555555555555555656
Q ss_pred HHHHhhcc
Q 048174 1001 KMILRSSS 1008 (1303)
Q Consensus 1001 ~~~l~q~~ 1008 (1303)
. .|+...
T Consensus 130 ~-~L~ktN 136 (314)
T PF04111_consen 130 D-RLRKTN 136 (314)
T ss_dssp H-CHHT--
T ss_pred H-HHHhcC
Confidence 5 444433
No 195
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.59 E-value=40 Score=43.32 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 932 NLSAEVEKLKALLQAEKQRADDSARKCAEAR 962 (1303)
Q Consensus 932 ~L~~E~~kLe~~leel~~~~~ele~~~~e~~ 962 (1303)
+|.+...+|+..+..++..++....+...+.
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq 229 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQ 229 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444444444444443333333333
No 196
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.56 E-value=0.069 Score=61.54 Aligned_cols=28 Identities=39% Similarity=0.536 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
++.+.+-|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678999999999999999999999884
No 197
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.54 E-value=0.068 Score=56.86 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=22.6
Q ss_pred HHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 88 INEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 88 ~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
...+....|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999998888764
No 198
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.43 E-value=40 Score=42.90 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048174 981 QLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 981 ~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.|+..+..|+-...++..+++
T Consensus 296 ~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 296 KLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 344555555555555555555
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.34 E-value=1.5 Score=48.20 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
...++..+++++++|++++.++....++ ...++++.+.+..+...+++.++.+|++++..++.++..++.++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887766553 233444444445555555666666666666666666666666555
No 200
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.33 E-value=23 Score=44.38 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 932 NLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEK---RLKKLEETERRVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 932 ~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~---l~~kl~e~E~~~~~Lq~el~~Le~kl~~le 997 (1303)
.|......++.+++.++.+...+++++.+++.+... ...++..++..+...++.+..+.+++++.+
T Consensus 314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433 333555666666666666666666665433
No 201
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.32 E-value=0.11 Score=46.84 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 202
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.31 E-value=12 Score=42.61 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048174 859 VKECDITNKGIEVHVKECDTTD 880 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e 880 (1303)
+.+.++|+.++.+++..+.+..
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544444443
No 203
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.23 E-value=0.98 Score=48.75 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
++++++.+|+.+|-.++++++...++....++.++.+...+.+.+..+...+..|++....|+..+.-.+.+.-
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i 215 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELI 215 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHH
Confidence 44555555666666666666666665555566666666666666666666666777777777666655555444
No 204
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.21 E-value=14 Score=48.47 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.+.+..+..++..++..++.++..+.+.+-.+..++.+...+......-.+.+..|.=.+....+++..|+.++.
T Consensus 464 ~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~ 538 (775)
T PF10174_consen 464 QEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLE 538 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345556666666666666666666666555555555444444442222233333333333333344444444333
No 205
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=92.09 E-value=0.17 Score=59.29 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=23.7
Q ss_pred CccccCccccccCccccchhHHhhcch
Q 048174 1114 KNYNCSFCRREFRSAQALGGHMNVHRR 1140 (1303)
Q Consensus 1114 ~~~~c~~c~~~f~~~~~l~~h~~~h~~ 1140 (1303)
-.|.|++|+|.|...--|..|+-+|-.
T Consensus 355 gi~~C~~C~KkFrRqAYLrKHqlthq~ 381 (500)
T KOG3993|consen 355 GIFSCHTCGKKFRRQAYLRKHQLTHQR 381 (500)
T ss_pred ceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence 379999999999999999999888764
No 206
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=92.07 E-value=2 Score=37.79 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 940 LKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 940 Le~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
|+..++....--..+..++.+++..+.....+|.+.+.++..|..++..|+.++..+..
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444445555666677777777778888888888888888888888877654
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.02 E-value=0.14 Score=58.26 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999887764
No 208
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.00 E-value=10 Score=50.22 Aligned_cols=10 Identities=0% Similarity=-0.217 Sum_probs=5.3
Q ss_pred ccCccccccC
Q 048174 1117 NCSFCRREFR 1126 (1303)
Q Consensus 1117 ~c~~c~~~f~ 1126 (1303)
.|..|+..+.
T Consensus 820 ~~~~~~~~~~ 829 (1041)
T KOG0243|consen 820 IWQTLGKQNE 829 (1041)
T ss_pred HHHHHHHHHH
Confidence 4555655543
No 209
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.93 E-value=0.23 Score=55.47 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=29.6
Q ss_pred HcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHhC
Q 048174 89 NEGKSNSILVSGESGAGKTETTKMIMRYLAYLGG 122 (1303)
Q Consensus 89 ~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~ 122 (1303)
..++..-|.|+|.||||||+.++.|...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3477889999999999999999999999887554
No 210
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=10 Score=48.48 Aligned_cols=28 Identities=29% Similarity=0.204 Sum_probs=21.1
Q ss_pred CcchhhhhhhhhccchhHHHHHHHHhhc
Q 048174 496 EVHYQSDLFLDKNKDYVVAEHQDLLSAS 523 (1303)
Q Consensus 496 ~V~Y~~~gflekN~D~l~~~~~~ll~~S 523 (1303)
.|.|--..|+-+|-|.-..=+..++..|
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 4889999999999887665556666554
No 211
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.83 E-value=12 Score=41.29 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARK 957 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~ 957 (1303)
+++..|+-+.+-|++.++.++..-+++..+
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 212
>PHA00732 hypothetical protein
Probab=91.82 E-value=0.058 Score=49.97 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.5
Q ss_pred ccccCccccccCccccchhHHhh-cch
Q 048174 1115 NYNCSFCRREFRSAQALGGHMNV-HRR 1140 (1303)
Q Consensus 1115 ~~~c~~c~~~f~~~~~l~~h~~~-h~~ 1140 (1303)
||.|..||+.|.+..+|..||+. |++
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~ 27 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL 27 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC
Confidence 68999999999999999999984 663
No 213
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.69 E-value=0.14 Score=56.27 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 214
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.64 E-value=0.11 Score=51.81 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=21.6
Q ss_pred EEEeCCcCCCchhhHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa 118 (1303)
|+|.|++|+|||+.++.+.+++-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 215
>PRK06696 uridine kinase; Validated
Probab=91.60 E-value=0.21 Score=55.55 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 78 AIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 78 avA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.+|+..+. ...+..--|.|+|.||||||+.++.|.+.|..
T Consensus 9 ~la~~~~~--~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILT--LNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHH--hCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35555543 13556778999999999999999999998853
No 216
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.57 E-value=18 Score=44.44 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYC 992 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~k 992 (1303)
+...+...++++..+++.+++....++..+..+..+++.++++.+.+.+.++...+++..+.+|+..
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrkd 411 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKD 411 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4566778889999999999999999998888889999999988888888888777777777777543
No 217
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.54 E-value=0.26 Score=50.35 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.....|+++|+.|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 446689999999999999999998876
No 218
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.49 E-value=0.12 Score=56.34 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
..+.|+|.|.||||||+.++.+++.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56799999999999999999998875
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.48 E-value=7.7 Score=46.44 Aligned_cols=15 Identities=7% Similarity=0.167 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 048174 981 QLQDSLNRLLYCMSE 995 (1303)
Q Consensus 981 ~Lq~el~~Le~kl~~ 995 (1303)
....++..|++++.+
T Consensus 432 s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444433
No 220
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.47 E-value=19 Score=39.30 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLK----KLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~----kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
|..+|...++.++..+++.++++..++..++-..+ .+.........++.++..|++++..|...+.
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888887776654333 4555556777788888888888777777666
No 221
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.44 E-value=0.13 Score=56.35 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=22.4
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.|+|+|.+|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 222
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.39 E-value=2.7 Score=46.27 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRADDSARKC 958 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ele~~~ 958 (1303)
+++|++++++|+++++.++.+++.++.++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 223
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.33 E-value=0.15 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.7
Q ss_pred CCeEEEEeCCcCCCchhhHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIM 114 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~ 114 (1303)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999976
No 224
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.31 E-value=0.13 Score=55.93 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|.|+|.||||||+.++.|...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999988876
No 225
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.24 E-value=0.13 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.8
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
|-|+|.||||||+.++.|...|...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 7899999999999999999999743
No 226
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.22 E-value=34 Score=42.94 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALL 944 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~l 944 (1303)
..+..++.|++.|+.++
T Consensus 249 ~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555444443
No 227
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.22 E-value=50 Score=41.56 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHH-HhhHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Q 048174 835 RGQEITES-QESQEAVQYIVDETSE-VKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRAT 897 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~eee~~-~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~ 897 (1303)
+++++..| ..++.-...+.+..+. .++.....+++.-.-..++.+..++..++.|++.+.+++
T Consensus 201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 3332222222222222 444555555565556666666666666666666544443
No 228
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=91.20 E-value=0.046 Score=39.77 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=22.0
Q ss_pred cccCccccccCccccchhHHhhcc
Q 048174 1116 YNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
|-|..|+|.|.+..+|..|++.+.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~ 25 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKK 25 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCC
Confidence 789999999999999999998753
No 229
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.16 E-value=0.21 Score=58.61 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=27.7
Q ss_pred HHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 84 YREMINEGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 84 y~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
...+...+. .|||+|.+|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 6999999999999999999998754
No 230
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.10 E-value=50 Score=41.31 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048174 864 ITNKGIEVHVKECDTTDRAIEVYVKECD 891 (1303)
Q Consensus 864 kL~~~ve~Le~qlee~e~~~~~le~e~~ 891 (1303)
.|+.+.-+|-.++.+++.++..+|+|..
T Consensus 171 sLETqKlDLmaevSeLKLkltalEkeq~ 198 (861)
T KOG1899|consen 171 SLETQKLDLMAEVSELKLKLTALEKEQN 198 (861)
T ss_pred hHHHHHhHHHHHHHHhHHHHHHHHHHhh
Confidence 4444444455555555555555554443
No 231
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.10 E-value=3.7 Score=53.40 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCM--SEQFSQLK 1001 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl--~~le~El~ 1001 (1303)
++..+..|+..|-..+.+-..-+.++.+.....+.+...+..+++..|..+..|+=+++.|...+ .+.|.++.
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~ 174 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYS 174 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444455556666666666666777777878888888887777777765 33444443
No 232
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.10 E-value=14 Score=36.12 Aligned_cols=30 Identities=3% Similarity=0.002 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 860 KECDITNKGIEVHVKECDTTDRAIEVYVKE 889 (1303)
Q Consensus 860 ~E~~kL~~~ve~Le~qlee~e~~~~~le~e 889 (1303)
.....++.++..|+..++.++..+.++..+
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 333455556666666666666555555444
No 233
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=17 Score=44.46 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 954 SARKCAEARVLSEKRLKKLE---ETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 954 le~~~~e~~~~~~~l~~kl~---e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+-.++.+++++.-.+.+... ..+-++.-|+-++++|++.+.-|..++.
T Consensus 168 llseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 168 LLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433444332 3334556666677777766655554444
No 234
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.97 E-value=5.7 Score=51.18 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRAD---DSARKCAEARVLSEKRLKKLEETE 976 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~---ele~~~~e~~~~~~~l~~kl~e~E 976 (1303)
...+|+.||-.|+.++..|++.-- -++.+++.++++.+-+...++++.
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443322 233334444444444444444444
No 235
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.95 E-value=3 Score=48.97 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQ 999 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~E 999 (1303)
+..|+++.+.|.+++.+++.+..+++++..+.-+........+.+.+.....|..++....+++..|+.-
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444444444444443333333333333344444444444445555555555555544443
No 236
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.89 E-value=0.14 Score=50.57 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.5
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998887654
No 237
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.88 E-value=0.18 Score=55.38 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.+...|.|+|.||||||+.++.|...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457888999999999999998887654
No 238
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.88 E-value=0.25 Score=56.63 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=26.3
Q ss_pred HHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 84 YREMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 84 y~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
+..|.... .-.|+|+|++|||||++.+.++.++.
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 34444332 33799999999999999999998874
No 239
>PTZ00121 MAEBL; Provisional
Probab=90.87 E-value=81 Score=43.34 Aligned_cols=19 Identities=5% Similarity=0.412 Sum_probs=10.2
Q ss_pred HHHHHHH---HHHcCCCeEEEE
Q 048174 80 ADAAYRE---MINEGKSNSILV 98 (1303)
Q Consensus 80 A~~Ay~~---m~~~~~~QsIii 98 (1303)
...+||+ |......-||||
T Consensus 251 ~n~CFR~LP~~Fnh~TkECvil 272 (2084)
T PTZ00121 251 NNECFLNLPILFNHQTKECVII 272 (2084)
T ss_pred CcchhhcchHhhcCCCCceEEE
Confidence 3445553 234556667777
No 240
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.83 E-value=2.3 Score=38.42 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 932 NLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 932 ~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le 997 (1303)
.|+.++..|+..++.+..++...+..++.+..+.......+.+.-..+.+|+.++..|+.++....
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888888888888888888888888888888888888888888888766543
No 241
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.82 E-value=15 Score=35.84 Aligned_cols=34 Identities=29% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 933 LSAEVEKLKALLQAEKQRADDSARKCAEARVLSE 966 (1303)
Q Consensus 933 L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~ 966 (1303)
|+..+..|+++.....+++.+++.++.++...++
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 242
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.82 E-value=0.18 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.1
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRY 116 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~y 116 (1303)
...|+|.|+||||||+.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 679999999999999999777664
No 243
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.78 E-value=0.23 Score=52.15 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=25.5
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998764
No 244
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.72 E-value=22 Score=43.17 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETE-RRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E-~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+....+.++.+++..+...+.++..++.........+.... .....+..++..++.++..++.++.
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 263 (423)
T TIGR01843 197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLN 263 (423)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444444433 3344455556666666666666665
No 245
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.69 E-value=8.9 Score=44.36 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.++..+..+++.++.++++.+.+++++..++...+..+................++.++...+.++..++.++.
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555444444444444332233333334444444455555555444444444
No 246
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=2.7 Score=52.04 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEK---RLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~---l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
...+++.|+.|+..|+..+++++..++.++.++..++++... ...++...+.++..|+.++..=..+++.|+.++.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777666554 2225555667777777777777777777777776
No 247
>PHA00733 hypothetical protein
Probab=90.60 E-value=0.12 Score=52.43 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=34.4
Q ss_pred ccccceecCCCccCCccCCCCCCCCcCCCCCccccCccccccCccccchhHHhhcc
Q 048174 1084 WVKEKWECEKCSCSEAQHGQSSCGLIVWPPKNYNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1084 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
....+|.|+.|+..-..... .........++|+|+.|++.|....+|..|++-+-
T Consensus 69 ~~~kPy~C~~Cgk~Fss~s~-L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 69 KAVSPYVCPLCLMPFSSSVS-LKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred CCCCCccCCCCCCcCCCHHH-HHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHhc
Confidence 34778999999633211100 00000001256999999999999999999986554
No 248
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.59 E-value=0.16 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.1
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
..-|||||.||+|||+..|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999998765
No 249
>PTZ00301 uridine kinase; Provisional
Probab=90.48 E-value=0.18 Score=55.73 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa 118 (1303)
-|-|+|.||||||+.++.|.+.|.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 377899999999999998887764
No 250
>PRK06762 hypothetical protein; Provisional
Probab=90.40 E-value=0.21 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.9
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 251
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.38 E-value=11 Score=48.61 Aligned_cols=143 Identities=14% Similarity=0.092 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhc-chhhhh----hccCCCcc-------CcccCc
Q 048174 856 TSEVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVED-CDDIDR----AIEPHPIT-------GKIPCS 923 (1303)
Q Consensus 856 e~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee-~~~~k~----~l~e~~~~-------~e~~~~ 923 (1303)
...+.|+..|...+++.+.+++..+..+....+....+.+.+..+..- ...+.. ........ .++...
T Consensus 275 ~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~ 354 (717)
T PF09730_consen 275 LQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGL 354 (717)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhccccH
Confidence 445677778888888888888777765555444433222222222210 000000 00000001 111222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 924 NEEEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 924 ~~~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.....+......|+..|+.++..++.++...+....+.. ..+...+.++..++..+.+....-++++..|+.+++
T Consensus 355 eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek---~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr 429 (717)
T PF09730_consen 355 EILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEK---DRLESEVQNLKEKLMSLEKSSREDQERISELEKELR 429 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 223455555555666666666666665555555332222 222333333444444444444444446666666666
No 252
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.36 E-value=29 Score=37.30 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 971 KLEETERRVYQLQDSLNRLLYCMSEQFSQL 1000 (1303)
Q Consensus 971 kl~e~E~~~~~Lq~el~~Le~kl~~le~El 1000 (1303)
.+......+..|+..+..|+.++..++..+
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555667777777777777777666544
No 253
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.33 E-value=0.17 Score=53.87 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=25.5
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.+...|+|+|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45569999999999999999999998864
No 254
>PRK07261 topology modulation protein; Provisional
Probab=90.33 E-value=0.19 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
-|+|.|.||||||+.++.|.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999986654
No 255
>PRK08233 hypothetical protein; Provisional
Probab=90.31 E-value=0.16 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=22.2
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.-|.|+|.||||||+.++.|...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999988764
No 256
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=67 Score=41.47 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
..++.+.+...++.+.++.|+..++..+.++.+++..+.+.. ..+..+......|++.+..|...+.
T Consensus 552 ~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~-------~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 552 QSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE-------LELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544444444444 4444444444444555554544444
No 257
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.28 E-value=76 Score=42.07 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 976 ERRVYQLQDSLNRLLYCMSEQFSQ 999 (1303)
Q Consensus 976 E~~~~~Lq~el~~Le~kl~~le~E 999 (1303)
+.++..|+.+....++-+..+-..
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444333
No 258
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=90.23 E-value=0.12 Score=59.08 Aligned_cols=28 Identities=39% Similarity=0.750 Sum_probs=25.2
Q ss_pred CCCccccCccccccCccccchhH-Hhhcc
Q 048174 1112 PPKNYNCSFCRREFRSAQALGGH-MNVHR 1139 (1303)
Q Consensus 1112 ~~~~~~c~~c~~~f~~~~~l~~h-~~~h~ 1139 (1303)
.|-+|.|..|.|-|.+|-+|+.| |+.|+
T Consensus 349 np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 349 NPILYACHCCDRFFTSGKSLSAHLMKKHG 377 (467)
T ss_pred CCCceeeecchhhhccchhHHHHHHHhhc
Confidence 56789999999999999999999 66776
No 259
>PLN03188 kinesin-12 family protein; Provisional
Probab=90.22 E-value=14 Score=49.70 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhH
Q 048174 75 HVFAIADAAYREMINEGKSNSILVSGESGAGKTETT 110 (1303)
Q Consensus 75 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 110 (1303)
.||..+..-.-.-.-.|-|=||+.-|.+|||||.|+
T Consensus 148 dVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 148 DIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 577665443322234788999999999999999985
No 260
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.21 E-value=45 Score=39.38 Aligned_cols=31 Identities=3% Similarity=-0.259 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 857 SEVKECDITNKGIEVHVKECDTTDRAIEVYV 887 (1303)
Q Consensus 857 ~~~~E~~kL~~~ve~Le~qlee~e~~~~~le 887 (1303)
+...+.+.|+..++.|+.+..++..+-+.++
T Consensus 169 sl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ie 199 (499)
T COG4372 169 SLQASQKQLQASATQLKSQVLDLKLRSAQIE 199 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665555554444433
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.19 E-value=0.4 Score=53.03 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 82 AAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 82 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444667889999999999999999999988753
No 262
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.15 E-value=0.22 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.6
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.+-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 263
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.11 E-value=0.088 Score=69.71 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 954 SARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 954 le~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
+......+..++.++...+++.+..+..|......|+.++.++..
T Consensus 206 l~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~ 250 (859)
T PF01576_consen 206 LTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKR 250 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333333333333334444444444444444444444444433333
No 264
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.06 E-value=0.19 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.9
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
.|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 265
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.06 E-value=0.21 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 266
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.04 E-value=0.39 Score=56.56 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=35.5
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 60 MMERYKGVPFGKLSPHVFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 60 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
+.+.|+-..+.++-.|-..+ .....+...+....++|+|++|+|||+.++.+.+++.
T Consensus 5 w~~ky~P~~~~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVV--ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHH--HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34556544444332222222 1223334445545799999999999999999999875
No 267
>PRK06547 hypothetical protein; Provisional
Probab=89.98 E-value=0.4 Score=51.29 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.0
Q ss_pred HcCCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 89 NEGKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 89 ~~~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
..+...-|+|+|.||||||+.++.+.+.+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999988764
No 268
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.97 E-value=0.2 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEeCCcCCCchhhHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa 118 (1303)
|-|+|.||||||+.++.|...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 66899999999999999988875
No 269
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.96 E-value=50 Score=42.20 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETE-------RRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E-------~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
+.+....+.+++..+...++.+...+.+...-+..+...++++.+.+.+.+ ..+..|++.-..-++++..++.
T Consensus 342 e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 342 ELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888877777544444444444444444444444 4444555555555556666666
Q ss_pred HHHH
Q 048174 999 QLKM 1002 (1303)
Q Consensus 999 El~~ 1002 (1303)
.++.
T Consensus 422 ~l~~ 425 (560)
T PF06160_consen 422 KLRE 425 (560)
T ss_pred HHHH
Confidence 6653
No 270
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.87 E-value=0.22 Score=53.57 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.9
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
|.|+|.||||||+.++.|...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988863
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=89.86 E-value=0.23 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.0
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
+-|+|.|.+|||||+.++.|-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988753
No 272
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.75 E-value=0.26 Score=51.89 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.8
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
....|+|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998886
No 273
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=89.75 E-value=0.11 Score=43.26 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=20.9
Q ss_pred CCCccccCccccccCccccchhHHhhcch
Q 048174 1112 PPKNYNCSFCRREFRSAQALGGHMNVHRR 1140 (1303)
Q Consensus 1112 ~~~~~~c~~c~~~f~~~~~l~~h~~~h~~ 1140 (1303)
...|..||+|+..+++..+|..|+.++.+
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence 34789999999999999999999977654
No 274
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=15 Score=47.12 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048174 968 RLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRSSS 1008 (1303)
Q Consensus 968 l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~~ 1008 (1303)
+..+....+.+...|+++.+....-++.+-++++ -|+.|+
T Consensus 846 la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~-sl~~qa 885 (970)
T KOG0946|consen 846 LANELKLIEQKLSNLQEKIKFGNNLIKELTEKIS-SLEAQA 885 (970)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhh-hHHHhh
Confidence 3345555556666666666666666666666655 444443
No 275
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.69 E-value=49 Score=38.96 Aligned_cols=46 Identities=4% Similarity=-0.015 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcch
Q 048174 860 KECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCD 905 (1303)
Q Consensus 860 ~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~ 905 (1303)
.-..+++..+.+.+.++++-.....++..+...+..+++.+.++++
T Consensus 107 el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 107 ELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666555555555555545555555555443
No 276
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.69 E-value=14 Score=37.11 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 864 ITNKGIEVHVKECDTTDRAIEVYVKE 889 (1303)
Q Consensus 864 kL~~~ve~Le~qlee~e~~~~~le~e 889 (1303)
+|...+..++.++...+..+..++.+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333
No 277
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=89.63 E-value=0.19 Score=56.63 Aligned_cols=30 Identities=20% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCCcCCCCCccccCccccccCccccchhHH
Q 048174 1106 CGLIVWPPKNYNCSFCRREFRSAQALGGHM 1135 (1303)
Q Consensus 1106 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~ 1135 (1303)
...+++..|||.|.+|+|.+..--.|+-|.
T Consensus 389 ~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 389 MNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred cccccccCCceeccccchhhccCccceecc
Confidence 345677889999999999999999998883
No 278
>PF13514 AAA_27: AAA domain
Probab=89.60 E-value=1.1e+02 Score=42.72 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=16.8
Q ss_pred EeCCcCCCchhhHHHHHHHHH
Q 048174 98 VSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 98 isGESGaGKTe~~k~i~~yLa 118 (1303)
|-|+.-||||++...|...|=
T Consensus 1 IyGpNEAGKST~l~fI~~lLF 21 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLF 21 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhc
Confidence 579999999998777766653
No 279
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=89.56 E-value=0.21 Score=57.05 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=17.1
Q ss_pred eEEEEeCCcCCCchhhHHHH
Q 048174 94 NSILVSGESGAGKTETTKMI 113 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i 113 (1303)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 57999999999999986654
No 280
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.53 E-value=0.22 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=22.5
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...|+|+|++|||||++.+.++.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4589999999999999999988876
No 281
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.52 E-value=46 Score=38.47 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--------
Q 048174 810 SQSRWRGIAARREFRKLKMTAKKEE---RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECD-------- 877 (1303)
Q Consensus 810 IQ~~~R~~~aRkel~~lk~aa~~~~---LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qle-------- 877 (1303)
+....+.+...+.-+..+....... +-.+..++ +++.+-+..+.+ .......|...+..+.....
T Consensus 32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e---in~kl~eL~~~~~~l~e~~~~~~~~~~~ 108 (294)
T COG1340 32 LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE---INAKLQELRKEYRELKEKRNEFNLGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhccCCC
Q ss_pred --HHHHHHHHHHhhhcchh----------hhhhhhhhcchhhhhhccCC-CccCcccCchhHHHHHHHHHHHHHHHHHHH
Q 048174 878 --TTDRAIEVYVKECDTKD----------RATEVHVEDCDDIDRAIEPH-PITGKIPCSNEEEEKIENLSAEVEKLKALL 944 (1303)
Q Consensus 878 --e~e~~~~~le~e~~~~~----------~~~~~~~ee~~~~k~~l~e~-~~~~e~~~~~~~~~ki~~L~~E~~kLe~~l 944 (1303)
..+..++.++...++.. ..+.++..+++..++++... ....-...+.....+..++..++.+|-.+.
T Consensus 109 ~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea 188 (294)
T COG1340 109 IKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 945 QAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRS 1006 (1303)
Q Consensus 945 eel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q 1006 (1303)
++-...+-.+-++..++++....+-.++.+....+..+..+...++..+.+++..+. -|+.
T Consensus 189 qe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik-~l~~ 249 (294)
T COG1340 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK-ALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHH
No 282
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.51 E-value=2.3 Score=45.98 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 937 VEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 937 ~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
..++..+.++|.+.+++++.++.+.++.+.++......++.....|-.++..|+.+.++|+.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 33333333333333333333333333333333333333333333333333333333333333
No 283
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.50 E-value=31 Score=42.42 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHH--HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 837 QEITES--QESQEAVQYIVDETSEVKECDITNKGIEVHVKECDTTDRAIEVYVKE 889 (1303)
Q Consensus 837 ~kl~eL--~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e 889 (1303)
.+++.| .+..+++++..+.++-..|.+.|.+.|..++..+.+.+..+..+.++
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeh 367 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEH 367 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 34444444444455666777777777777777666666555555544
No 284
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=53 Score=39.70 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 856 TSEVKECDITNKGIEVHVKECDTTD 880 (1303)
Q Consensus 856 e~~~~E~~kL~~~ve~Le~qlee~e 880 (1303)
+.+....+.++.++.+|.+||++.+
T Consensus 296 aKL~~~l~~~~~~~~~ltqqwed~R 320 (521)
T KOG1937|consen 296 AKLMGKLAELNKQMEELTQQWEDTR 320 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667778888888888888877
No 285
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=89.33 E-value=15 Score=48.47 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=9.9
Q ss_pred HHHHHHHH-HhhHHHHHhhhh
Q 048174 835 RGQEITES-QESQEAVQYIVD 854 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~e 854 (1303)
|++++.++ .+|+..|+...+
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 555544443333
No 286
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.29 E-value=17 Score=42.56 Aligned_cols=70 Identities=29% Similarity=0.313 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARV------------LSEKRLKKLEETERRVYQLQDSLNRLLYCMS 994 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~------------~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~ 994 (1303)
.++...|..|+..|++.+.+++..+.-+.+++...+- +.+++...++.+..++.+|+.++..+-+...
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444444443333321 2233444566666666666666666555544
Q ss_pred HH
Q 048174 995 EQ 996 (1303)
Q Consensus 995 ~l 996 (1303)
++
T Consensus 158 El 159 (319)
T PF09789_consen 158 EL 159 (319)
T ss_pred HH
Confidence 43
No 287
>PF05729 NACHT: NACHT domain
Probab=89.25 E-value=0.32 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 95 SILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 589999999999999999998887643
No 288
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.24 E-value=0.21 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.7
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRY 116 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~y 116 (1303)
.+.|+|+|.||||||+..+.|...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999988554
No 289
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.23 E-value=41 Score=37.48 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERR-----------VYQLQDSLNRLLYCMS 994 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~-----------~~~Lq~el~~Le~kl~ 994 (1303)
..+.+..|+.+...++..++.++.++.+++.++.+++.....+..+....... ....-..+.++++++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~ 176 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVD 176 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 34566666667777777777777777777777666665555444433333321 2334455566677766
Q ss_pred HHHHHHH
Q 048174 995 EQFSQLK 1001 (1303)
Q Consensus 995 ~le~El~ 1001 (1303)
.++.+..
T Consensus 177 ~~ea~ae 183 (219)
T TIGR02977 177 ELEAQAE 183 (219)
T ss_pred HHHHHHH
Confidence 6665555
No 290
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.22 E-value=0.4 Score=55.89 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=26.8
Q ss_pred HHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 85 REMINEGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 85 ~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
..+...+ ..|+|+|.+|||||+.++.+++++..
T Consensus 126 ~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 126 REAVLAR--KNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3444433 48999999999999999999999865
No 291
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=89.18 E-value=54 Score=38.78 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=34.2
Q ss_pred HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 835 RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECDTTDRAIEVYVKE 889 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e 889 (1303)
+..|+++| ..|. ..-+....|+..|+.+..+++.-+....+..+++.+|
T Consensus 279 m~tKveelar~Lr------~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KE 328 (442)
T PF06637_consen 279 MTTKVEELARSLR------AGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKE 328 (442)
T ss_pred HHHHHHHHHHHHh------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888 6653 2223456778888888888888877777666666655
No 292
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.17 E-value=36 Score=48.00 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhHHH
Q 048174 781 AKGALSIQTSWRGHRD 796 (1303)
Q Consensus 781 ~~AA~~IQ~~~Rg~~a 796 (1303)
..++..|...|+.|..
T Consensus 246 ~~~l~~i~~~y~~y~~ 261 (1353)
T TIGR02680 246 ERALRNFLQRYRRYAR 261 (1353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777777754
No 293
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.17 E-value=0.3 Score=52.18 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=22.6
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa 118 (1303)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 294
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.13 E-value=0.22 Score=55.65 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=16.5
Q ss_pred EEEEeCCcCCCchhhHHHH
Q 048174 95 SILVSGESGAGKTETTKMI 113 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i 113 (1303)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987654
No 295
>PLN02939 transferase, transferring glycosyl groups
Probab=89.11 E-value=14 Score=49.22 Aligned_cols=50 Identities=12% Similarity=-0.051 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcchhhhhhhhhhcch
Q 048174 856 TSEVKECDITNKGIEVHVKECDTT---DRAIEVYVKECDTKDRATEVHVEDCD 905 (1303)
Q Consensus 856 e~~~~E~~kL~~~ve~Le~qlee~---e~~~~~le~e~~~~~~~~~~~~ee~~ 905 (1303)
....+|+.-|...++-|+.++.+. ++..-.+++|+.-++..++++...+-
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFI 281 (977)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777776654 34566777777766666666665543
No 296
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.02 E-value=5.8 Score=48.95 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKR 968 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l 968 (1303)
+.+.-+|-.|+.+||-.+..+++.-.+.|+++...+..+++.
T Consensus 173 ETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 173 ETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 334444555666666666666655555566655555555553
No 297
>PRK11519 tyrosine kinase; Provisional
Probab=89.02 E-value=11 Score=49.63 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=10.3
Q ss_pred HHHHHHHH-HhhHHHHHhhhh
Q 048174 835 RGQEITES-QESQEAVQYIVD 854 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~e 854 (1303)
|++++.++ .+|+..++...+
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 555544444433
No 298
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=88.99 E-value=55 Score=38.60 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 048174 975 TERRVYQLQDSLNRLLYCMSEQFSQLKMILRSSSTST 1011 (1303)
Q Consensus 975 ~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~~~~~ 1011 (1303)
+|-...--..++.=|+..++.|.+|+++.+++.....
T Consensus 510 LEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaS 546 (593)
T KOG4807|consen 510 LEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYAS 546 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3333334445666666677777788887777665444
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.87 E-value=0.43 Score=55.84 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=34.7
Q ss_pred HHHhcCCCCCCC--CchHHHHHHHHHHHHHHcC-CCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 61 MERYKGVPFGKL--SPHVFAIADAAYREMINEG-KSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 61 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.++|+-..+.++ ++|+-. .+......+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345665555554 333322 344434334 46778889999999999999998875
No 300
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.81 E-value=0.22 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEeCCcCCCchhhHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa 118 (1303)
|+|.|.||||||+.++.+.+.|-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998873
No 301
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.80 E-value=25 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=16.2
Q ss_pred hhhcccc-cCcccccccccccCCC
Q 048174 1281 LELEMGL-KDTKESVDLELRLGYP 1303 (1303)
Q Consensus 1281 l~l~~~~-~~~~~~ldl~lrlg~~ 1303 (1303)
+-|.+.. +.|-..-+|||=+|.|
T Consensus 581 ~~~p~~~w~~p~vvawlel~vgmp 604 (916)
T KOG0249|consen 581 KGLPFAQWDGPTVVAWLELWVGMP 604 (916)
T ss_pred ccCchhhcCCCeeeehhhHHhccH
Confidence 4445555 7778888899888864
No 302
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.78 E-value=0.23 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 303
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.76 E-value=0.62 Score=52.37 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 80 ADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 80 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
|-.+.+.+........++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555655556679999999999999999988887764
No 304
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.64 E-value=46 Score=37.25 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRADDSARKCAEARV-------LSEKRLKKLEETERRVYQLQDSLNRL 989 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~-------~~~~l~~kl~e~E~~~~~Lq~el~~L 989 (1303)
+|..|+.|++.-+..-+++++.-+++-.-+.++.. .+-=+.++|++.+.++.+|.+.+..+
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333333 33335556666666666655555443
No 305
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.63 E-value=95 Score=40.93 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=13.4
Q ss_pred CCCchhHHHHHhhcccchhHHhh
Q 048174 1052 SFKPNALQLIVQDLSATEITAVL 1074 (1303)
Q Consensus 1052 ~~~~~~~~l~v~~~s~~~~~~~~ 1074 (1303)
.+....--|..+...+++..-+|
T Consensus 255 ~~~~~~~~l~~~l~~~eeEnk~L 277 (769)
T PF05911_consen 255 KRSKESEFLTERLQAMEEENKML 277 (769)
T ss_pred cchhhhHHHHHHHHHHHHHHHHH
Confidence 34444456666666666665554
No 306
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.63 E-value=0.28 Score=58.40 Aligned_cols=34 Identities=32% Similarity=0.603 Sum_probs=26.5
Q ss_pred HHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 84 YREMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 84 y~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
+..+.. .....|+|+|++|||||++.+.+++++.
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344443 2346899999999999999999998864
No 307
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.62 E-value=0.27 Score=53.27 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.8
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.-.|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4579999999999999999988764
No 308
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.55 E-value=48 Score=38.24 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 048174 979 VYQLQDSLNRLLYCM 993 (1303)
Q Consensus 979 ~~~Lq~el~~Le~kl 993 (1303)
....+..+..++..+
T Consensus 128 ~~~~~~~l~~l~~~l 142 (302)
T PF10186_consen 128 LEERKQRLSQLQSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333334333
No 309
>PF12846 AAA_10: AAA-like domain
Probab=88.53 E-value=0.33 Score=55.71 Aligned_cols=29 Identities=31% Similarity=0.483 Sum_probs=25.6
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
|..++|.|.||||||++++.++.+++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999998888765
No 310
>PF13245 AAA_19: Part of AAA domain
Probab=88.42 E-value=0.54 Score=43.28 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667888999999999888888888875
No 311
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.40 E-value=0.29 Score=55.36 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHHHhC
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAYLGG 122 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~ 122 (1303)
.+..++-|-||||+|||++.|.|++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 45679999999999999999999988764443
No 312
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.40 E-value=0.76 Score=55.15 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=39.0
Q ss_pred HHHhcCCCCCCCC--chHHHHHHHHHHHHHHc-CCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 61 MERYKGVPFGKLS--PHVFAIADAAYREMINE-GKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 61 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.++|+-..+.++- +|+-.. ++++... +-+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4667666655553 444433 4444444 5689999999999999999999999885
No 313
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.40 E-value=0.65 Score=53.83 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
+.+.-|-|+|.||||||++++.|...|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46678889999999999999988777754
No 314
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.38 E-value=6.4 Score=36.17 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 925 EEEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQ 996 (1303)
Q Consensus 925 ~~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~l 996 (1303)
..+.+|+..-..+..|+-++++++.++..+..+...++...++ ++..+.+|+.+-..-++++..|
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~-------L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREE-------LERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778778888888888888888777777766555544333 4445555555555555555443
No 315
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.37 E-value=0.29 Score=53.12 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|.|+|-||||||+.++.|...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887764
No 316
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.33 E-value=0.31 Score=58.27 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=25.4
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999864
No 317
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.32 E-value=0.34 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.0
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
|.|.|++|.|||..++.++++|....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999987543
No 318
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.28 E-value=0.42 Score=50.89 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
....|+|.|.+|||||+.++.+...|..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999964
No 319
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.15 E-value=41 Score=36.11 Aligned_cols=75 Identities=24% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.++|++=..|+.+|+......-.-+.....++..+..+...+...+.+.+.....+++++..+......+...+.
T Consensus 55 ~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~ 129 (177)
T PF13870_consen 55 NEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNK 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555556666666666666666666666666666666666666666666
No 320
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=88.15 E-value=0.25 Score=58.21 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=25.5
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
--++-+-||||||||.|+..||+-|.+-+
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~~ 64 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSPA 64 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCCc
Confidence 34888999999999999999999998643
No 321
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=88.14 E-value=0.27 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.6
Q ss_pred EEEeCCcCCCchhhHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa 118 (1303)
||+.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999987654
No 322
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=88.11 E-value=0.18 Score=36.22 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=18.2
Q ss_pred cccCccccccCccccchhHHhh
Q 048174 1116 YNCSFCRREFRSAQALGGHMNV 1137 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~ 1137 (1303)
.+|+.|||.| ...+|..|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 77889999864
No 323
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.06 E-value=0.26 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.7
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
+-|+|.|.||||||+.++.|++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999999865
No 324
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.03 E-value=0.36 Score=53.16 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRY 116 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~y 116 (1303)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45789999999999999988887754
No 325
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.01 E-value=0.49 Score=56.50 Aligned_cols=36 Identities=28% Similarity=0.589 Sum_probs=29.8
Q ss_pred HHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 84 YREMINEGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 84 y~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
++.....+.+.+|+|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334444677889999999999999999999998864
No 326
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=87.97 E-value=23 Score=43.24 Aligned_cols=54 Identities=28% Similarity=0.244 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQL 982 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~L 982 (1303)
++..+.-|++++...+...++.-++++.+..++++.+.+.+..+++.|..++.|
T Consensus 248 k~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 248 KIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444444444444444444444444444443
No 327
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.86 E-value=0.38 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.2
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
|+|+|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 328
>PRK06217 hypothetical protein; Validated
Probab=87.80 E-value=0.33 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
-|+|+|-||||||+.++.|.+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999998776
No 329
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.76 E-value=0.31 Score=54.40 Aligned_cols=25 Identities=44% Similarity=0.599 Sum_probs=21.3
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
-+++-|.||||||++.|+|-+-+.-
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 5778899999999999999877643
No 330
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.76 E-value=1.5e+02 Score=42.28 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 975 TERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 975 ~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.+..+..|+.++..-..++.++++...
T Consensus 910 ~~eq~~~l~~~L~~a~s~i~~yqe~~~ 936 (1822)
T KOG4674|consen 910 ELEEITDLKEELTDALSQIREYQEEYS 936 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555544
No 331
>PLN03025 replication factor C subunit; Provisional
Probab=87.75 E-value=0.64 Score=54.71 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=38.8
Q ss_pred HHHhcCCCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 61 MERYKGVPFGKLSPHVFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 61 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.++|+-..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||++++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556655554443333222 2355666666667899999999999999999998874
No 332
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.72 E-value=98 Score=43.87 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=24.6
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 94 NSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
-..+|+|.+|||||.+.-.++.+|..-+
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~~ 52 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDGK 52 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcCC
Confidence 3788999999999999999999987654
No 333
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.67 E-value=0.16 Score=67.21 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q 048174 858 EVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVH 900 (1303)
Q Consensus 858 ~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~ 900 (1303)
...-+.+|+.+++++...|+........+++....++..+.++
T Consensus 347 LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~ 389 (859)
T PF01576_consen 347 LEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEW 389 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455556777777777777766655555555444444443333
No 334
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.59 E-value=51 Score=36.60 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=23.1
Q ss_pred HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 835 RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECDTTDRA 882 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~ 882 (1303)
|+..+.++ ..+...+..... .......++.++.+++..+.+|+.+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~---~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALAR---VMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 444333333222 3455556666666666666666644
No 335
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.57 E-value=0.52 Score=55.76 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=24.4
Q ss_pred HHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 87 MINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 87 m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
+.+.+ ..|+|+|.+|||||+..+.++.++.
T Consensus 156 ~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 156 AVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34444 4799999999999999999888763
No 336
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=87.52 E-value=57 Score=37.04 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 048174 933 LSAEVEKLKALLQ 945 (1303)
Q Consensus 933 L~~E~~kLe~~le 945 (1303)
|..++..|...++
T Consensus 126 l~~~l~~l~~~~~ 138 (247)
T PF06705_consen 126 LVRELNELQEAFE 138 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 337
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.51 E-value=2.3 Score=46.64 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 933 LSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCM 993 (1303)
Q Consensus 933 L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl 993 (1303)
+++|+++++..++.++++++..+.++..+++...++.++.++...++++|-++...|++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555666665566666666655555554
No 338
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.41 E-value=0.41 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa 118 (1303)
-|.|||.+|||||+.++.|-+++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 388999999999999999998864
No 339
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.37 E-value=47 Score=43.94 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 966 EKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 966 ~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.+...+++.+...-.+.+..+....+.+.+++.+++
T Consensus 321 ~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 321 EEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333333444444444444444444444444
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.36 E-value=0.36 Score=55.29 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=24.6
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4679999999999999999999887654
No 341
>PRK12377 putative replication protein; Provisional
Probab=87.34 E-value=0.86 Score=51.68 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 75 HVFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 75 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
|+++.|..-...... ..+.|+|+|.+|+|||..+..|.++|..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 566665554444332 35799999999999999999999999753
No 342
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=87.32 E-value=0.45 Score=49.00 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
++|+|++|+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999876
No 343
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.30 E-value=0.39 Score=57.58 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.3
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999875
No 344
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.26 E-value=0.4 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=19.9
Q ss_pred EEEeCCcCCCchhhHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa 118 (1303)
|-|+|-||||||+.++.|...|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 44699999999999999988875
No 345
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.18 E-value=25 Score=41.09 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRSSSTSTSTS 1014 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~~~~~s~~ 1014 (1303)
|+..|--+++-|+..+++++..+..+++++.+....++-.......|+.++..|++++....+-+ ...++..-|.
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli----~khGlVlv~~ 180 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI----EKHGLVLVPD 180 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCeeeCCC
Confidence 33344444444444555555555555555554444555555667778888888888887666544 3666655443
No 346
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.17 E-value=0.5 Score=56.10 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=22.9
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45799999999999999999988763
No 347
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=87.10 E-value=0.29 Score=57.38 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=25.4
Q ss_pred cccCccccccCccccchhHHhhcchhhh
Q 048174 1116 YNCSFCRREFRSAQALGGHMNVHRRDRA 1143 (1303)
Q Consensus 1116 ~~c~~c~~~f~~~~~l~~h~~~h~~~~~ 1143 (1303)
|+|+.|+|+|++.-+|-.|.|-|+-..+
T Consensus 296 YrCPEC~KVFsCPANLASHRRWHKPR~e 323 (500)
T KOG3993|consen 296 YRCPECDKVFSCPANLASHRRWHKPRPE 323 (500)
T ss_pred ecCCcccccccCchhhhhhhcccCCchh
Confidence 9999999999999999999999985433
No 348
>PRK03846 adenylylsulfate kinase; Provisional
Probab=87.09 E-value=0.63 Score=50.75 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=27.6
Q ss_pred HcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 89 NEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 89 ~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
...+...|+|+|.||||||+.++.|...|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34677899999999999999999999988643
No 349
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.06 E-value=11 Score=44.95 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048174 980 YQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 980 ~~Lq~el~~Le~kl~~le 997 (1303)
.+.++.+.+|++.+..|.
T Consensus 331 v~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 331 VKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444444444444443
No 350
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.06 E-value=11 Score=45.01 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=11.6
Q ss_pred hhhhcchhhhhhccCC-CccCcccCc
Q 048174 899 VHVEDCDDIDRAIEPH-PITGKIPCS 923 (1303)
Q Consensus 899 ~~~ee~~~~k~~l~e~-~~~~e~~~~ 923 (1303)
+..++++..|..+++. ..+.|-+++
T Consensus 305 ~IseeLe~vK~emeerg~~mtD~sPl 330 (359)
T PF10498_consen 305 EISEELEQVKQEMEERGSSMTDGSPL 330 (359)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 3444444455444444 455554443
No 351
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.04 E-value=26 Score=41.97 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 971 KLEETERRVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 971 kl~e~E~~~~~Lq~el~~Le~kl~~le 997 (1303)
.+++++.+..-.++.+..+..+++..+
T Consensus 279 ~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 279 DYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445544444444443
No 352
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.01 E-value=0.87 Score=50.63 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=25.5
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999988754
No 353
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.96 E-value=42 Score=39.39 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKK----LEETERR---VYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~k----l~e~E~~---~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+++.+.+.+..|+..+..+....+|+..+....+...+++... +...+.+ ++.|-.|..=|.+++..+++|..
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544444444444443333333333331 1111112 34444445555555555555554
No 354
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.95 E-value=65 Score=37.16 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEET-ERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~-E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
.++++..++-|+..|+++++++..+.+..++..-.++....+...++... +..+.-|+.....|-.+...|.+
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkE 292 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKE 292 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56888999999999999999999999988888888887777666654332 23333344444444444444433
No 355
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.94 E-value=0.44 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=23.9
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
-.|.|+|.||||||+..+.|+..|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 368899999999999999999998753
No 356
>PRK01156 chromosome segregation protein; Provisional
Probab=86.93 E-value=1.3e+02 Score=40.68 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 973 EETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 973 ~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
++....+..|+.++..|..++..+..++.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~ 440 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLD 440 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 357
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.92 E-value=0.41 Score=49.39 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.4
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
+|+|.|.+|||||+.+|.+-.+|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 358
>PRK10698 phage shock protein PspA; Provisional
Probab=86.90 E-value=58 Score=36.48 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERR--V---------YQLQDSLNRLLYCMSE 995 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~--~---------~~Lq~el~~Le~kl~~ 995 (1303)
.+++..|+.+....+..++.++..+..++.++.+.+.....+..+....+.. + ..--....++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555444433321 1 1122344456666666
Q ss_pred HHHHHH
Q 048174 996 QFSQLK 1001 (1303)
Q Consensus 996 le~El~ 1001 (1303)
++.+..
T Consensus 178 ~Ea~ae 183 (222)
T PRK10698 178 MEAEAE 183 (222)
T ss_pred HHHHHh
Confidence 666555
No 359
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=86.87 E-value=69 Score=38.69 Aligned_cols=15 Identities=13% Similarity=-0.175 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhHHHH
Q 048174 783 GALSIQTSWRGHRDF 797 (1303)
Q Consensus 783 AA~~IQ~~~Rg~~aR 797 (1303)
++..-|-++|+..+|
T Consensus 178 ~~kdSQlkvrlqe~~ 192 (554)
T KOG4677|consen 178 SPKDSQLKVRLQEVR 192 (554)
T ss_pred ccchhhHHHHHHHHH
Confidence 333445555554443
No 360
>PHA00733 hypothetical protein
Probab=86.61 E-value=0.28 Score=49.84 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=25.6
Q ss_pred CCCccccCccccccCccccchhHHhhcc
Q 048174 1112 PPKNYNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1112 ~~~~~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
..+||.|+.||+.|++..+|..|++.|.
T Consensus 70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h~ 97 (128)
T PHA00733 70 AVSPYVCPLCLMPFSSSVSLKQHIRYTE 97 (128)
T ss_pred CCCCccCCCCCCcCCCHHHHHHHHhcCC
Confidence 3689999999999999999999999874
No 361
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.53 E-value=0.79 Score=53.44 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=36.1
Q ss_pred HHhcCCCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 62 ERYKGVPFGKLSPHVFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 62 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
+.|+-..+.++-.|--+ -...+.+...+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~--~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEI--VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHH--HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 44544444444444322 23455555555545699999999999999999988874
No 362
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=86.47 E-value=0.49 Score=50.40 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999988864
No 363
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=86.44 E-value=0.49 Score=52.70 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=24.9
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.+..++=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46679999999999999999999877643
No 364
>PF14992 TMCO5: TMCO5 family
Probab=86.36 E-value=28 Score=39.92 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRAD 952 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ 952 (1303)
..+++.+.++.+.++.++.++++...
T Consensus 115 k~~lqql~~~~~~qE~ei~kve~d~~ 140 (280)
T PF14992_consen 115 KNKLQQLLESCASQEKEIAKVEDDYQ 140 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555544333
No 365
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.33 E-value=91 Score=38.38 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048174 972 LEETERRVYQLQDSLNRLLYCMS 994 (1303)
Q Consensus 972 l~e~E~~~~~Lq~el~~Le~kl~ 994 (1303)
+..++..+...++.+..|-++.+
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 366
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.29 E-value=14 Score=37.08 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048174 964 LSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILR 1005 (1303)
Q Consensus 964 ~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~ 1005 (1303)
...++.++++.+|.++..|+++...+++++++|++++...+.
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445577788889999999999999999999999999985543
No 367
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=86.21 E-value=0.38 Score=59.54 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
...+.+-|-||||||||+++..||.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 456789999999999999999999998754
No 368
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=86.16 E-value=0.56 Score=48.43 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.5
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 95 SILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998654
No 369
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=86.16 E-value=0.45 Score=49.12 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|+|+|.+|||||+.++.+.+.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 370
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.16 E-value=33 Score=41.36 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048174 982 LQDSLNRLLYCMSEQFSQLKM 1002 (1303)
Q Consensus 982 Lq~el~~Le~kl~~le~El~~ 1002 (1303)
+.+.+...++++.+|++++..
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444445556666665553
No 371
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=86.14 E-value=0.55 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.1
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 372
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=86.04 E-value=0.55 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5689999999999999999998775
No 373
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.95 E-value=0.96 Score=55.68 Aligned_cols=54 Identities=17% Similarity=0.382 Sum_probs=38.4
Q ss_pred HHhcCCCCCCC--CchHHHHHHHHHHHHHHcC-CCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 62 ERYKGVPFGKL--SPHVFAIADAAYREMINEG-KSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 62 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
++|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.+.|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45655554443 4566553 44444444 4788999999999999999999998864
No 374
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.86 E-value=0.76 Score=55.52 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.2
Q ss_pred HHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 86 EMINEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 86 ~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
.......+.+++|+|.+|+|||.+++.+++.+...
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33446677899999999999999999999988643
No 375
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.85 E-value=0.83 Score=57.57 Aligned_cols=34 Identities=15% Similarity=0.429 Sum_probs=27.9
Q ss_pred HHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 85 REMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 85 ~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
+..+....++.|+|.||+|+|||..++.|.++.-
T Consensus 78 ~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 78 KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3334566789999999999999999999987643
No 376
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=85.81 E-value=0.55 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998775
No 377
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.49 E-value=18 Score=35.25 Aligned_cols=67 Identities=21% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 935 AEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 935 ~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.|..+|+++..-|++-+-+.+.+..++++.+......+...+.+++-|.=....|..++..|++|+.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444555555555555555556666666666665
No 378
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.46 E-value=1.6 Score=56.82 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHH-cCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 76 VFAIADAAYREMIN-EGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 76 ifavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
+-.|+. +++..+. .+.+.++.|+|.+|.|||.+++.+++-|...
T Consensus 764 IeeLas-fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHG-FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHH-HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444443 3333333 4455677899999999999999999998654
No 379
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.43 E-value=0.72 Score=57.42 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 83 AYREMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 83 Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.+..|... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444433 234789999999999999998888774
No 380
>PRK04182 cytidylate kinase; Provisional
Probab=85.39 E-value=0.53 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
.|+|+|.+|||||+.++.+.+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999998654
No 381
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.39 E-value=37 Score=38.56 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 936 EVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 936 E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+...|+....+++..+..++.+.....++...+..++.+.+..+..|..+...-......++.++.
T Consensus 48 ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 48 EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433344444445555555555555555555554444444444433
No 382
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.35 E-value=43 Score=41.04 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.++.....+|+.+|..++.++++++.....+..++...+....+.-..++.+...|+++..++.+.+.+-++|++
T Consensus 225 t~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 225 TKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777776666665554444444444433333333334444444444444444444455555
No 383
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.33 E-value=25 Score=42.52 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRAD 952 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ 952 (1303)
-++-...|+..||+++..++++++
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334445577777777766666555
No 384
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=85.26 E-value=27 Score=42.01 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQ 996 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~l 996 (1303)
.+.+.+..|..+|-+++++++++-.++...+.+++...+++.++....-+.+...+.++-..+..+..+
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sl 251 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSL 251 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 344455556666666666666666665555555555555555544444444444444443334443333
No 385
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.21 E-value=0.61 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.9
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
-|+|.|.||||||+-++.|.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999884
No 386
>PRK13764 ATPase; Provisional
Probab=85.21 E-value=0.64 Score=58.86 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=23.9
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999863
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.17 E-value=53 Score=43.07 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048174 858 EVKECDITNKGIEVHVKECDTTDRAIEVYVKECD 891 (1303)
Q Consensus 858 ~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~ 891 (1303)
.+++.+.+++..+.|.+++++..++.+.+.++.+
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666667777666666666544
No 388
>PRK04040 adenylate kinase; Provisional
Probab=85.09 E-value=0.69 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.8
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998883
No 389
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.08 E-value=0.59 Score=55.29 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.7
Q ss_pred cCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 90 EGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 90 ~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
-+..|++-|-||||||||+....+++.+..-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3678999999999999999999988877543
No 390
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=85.04 E-value=0.77 Score=57.42 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=42.4
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHH--HHHHHHHcC-CCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 59 YMMERYKGVPFGKLSPHVFAIADA--AYREMINEG-KSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 59 ~~~~~y~~~~~~~~~PHifavA~~--Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.++++|+-....++.-|-=.|.+- ....|.... ..+-+|++|.+|+|||++.+.+.+.|
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 456788777777888886555442 334444333 35677889999999999999988876
No 391
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.96 E-value=1.1 Score=55.89 Aligned_cols=56 Identities=20% Similarity=0.433 Sum_probs=38.1
Q ss_pred HHhcCCCCCCC--CchHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 62 ERYKGVPFGKL--SPHVFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 62 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
++|+-..+.++ ..|+...=..| +...+-.+++|++|+.|.|||++++++.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 45555544444 34444432222 2345568999999999999999999999998653
No 392
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=84.83 E-value=1.1 Score=47.54 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=28.7
Q ss_pred HcCCCeEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 89 NEGKSNSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 89 ~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
...++-+|-++|-||||||+.+..+-+-|-..+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 445677999999999999999999999988765
No 393
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.80 E-value=68 Score=39.87 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=11.0
Q ss_pred CccchhHhhHhhHHHHHHHHc
Q 048174 544 KFSSIGSRFKLQLQQLMDTLN 564 (1303)
Q Consensus 544 ~~~tv~~~fk~sL~~Lm~~L~ 564 (1303)
.+++|..+....|+.|-+.+.
T Consensus 165 n~s~v~~~l~~~l~~l~d~~k 185 (518)
T PF10212_consen 165 NYSAVFTQLAASLHKLHDVLK 185 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 394
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.75 E-value=1 Score=55.94 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=39.1
Q ss_pred HHHhcCCCCCCC--CchHHHHHHHHHHHHH-HcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 61 MERYKGVPFGKL--SPHVFAIADAAYREMI-NEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 61 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
..+|+-..+.++ .+|+-.. .+++. ..+-+|++|++|..|.|||++++++-+.|-..
T Consensus 4 a~KyRP~~f~dliGQe~vv~~----L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRI----LRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHH----HHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 355665555444 4555443 33333 34568999999999999999999999988654
No 395
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.68 E-value=0.89 Score=40.20 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=18.5
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
..+|+|++|||||+..-.|.--|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999876655433
No 396
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.63 E-value=1.1 Score=54.86 Aligned_cols=43 Identities=28% Similarity=0.503 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 74 PHVFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 74 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.|+... ....+.+...+...+|||.|++|+|||+.++.|.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 354443 3556777778888899999999999999999987754
No 397
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=84.62 E-value=0.77 Score=58.44 Aligned_cols=55 Identities=22% Similarity=0.460 Sum_probs=37.8
Q ss_pred HHhcCCCCCCC--CchHHHHHHHHHHHHHH-cCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 62 ERYKGVPFGKL--SPHVFAIADAAYREMIN-EGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 62 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
++|+-..+.++ ..|+-. ...++.. .+-.+++|++|.+|.|||++++++.+.|-..
T Consensus 16 ~KyRP~~f~dliGq~~~v~----~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVR----TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45655444443 333333 2444443 4568999999999999999999999998653
No 398
>PRK07667 uridine kinase; Provisional
Probab=84.61 E-value=0.68 Score=50.38 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.8
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
--|.|+|-||||||+.++.+...|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36678999999999999999998864
No 399
>PHA00729 NTP-binding motif containing protein
Probab=84.60 E-value=1.2 Score=49.55 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 80 ADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 80 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
|....+.+. ++.-..|+|+|.+|+|||+.+..|.+.+.
T Consensus 5 ~k~~~~~l~-~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYN-NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHh-cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444444443 34446899999999999999999998765
No 400
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.59 E-value=14 Score=33.74 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEA 961 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~ 961 (1303)
+.+|+.+-..++.|+.++++|+.++..+..+...+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444444444444444333333
No 401
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.58 E-value=17 Score=37.90 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCM 993 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl 993 (1303)
+++..+..++..|+..++.++.+++++++++...+.....+..++..++.....+++++.++...+
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555445555555555555555555555554444
No 402
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=84.57 E-value=0.81 Score=55.05 Aligned_cols=41 Identities=22% Similarity=0.571 Sum_probs=32.7
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVE 132 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie 132 (1303)
..|+|-+-|+||||||+.++++.+|+-.-+|.-.-++..|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999876665444444444
No 403
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.53 E-value=1.8e+02 Score=40.15 Aligned_cols=225 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHH-HhhHHHHHhhhh------
Q 048174 784 ALSIQTSWRGHRDFSYYKRLRKASVFSQSRWRGIAARREFRKLKMTAKKEE--RGQEITES-QESQEAVQYIVD------ 854 (1303)
Q Consensus 784 A~~IQ~~~Rg~~aRr~~~~~~kaav~IQ~~~R~~~aRkel~~lk~aa~~~~--LE~kl~eL-~rLe~ee~~r~e------ 854 (1303)
...||.....-..++. ...+..+-.+|....-.-..++.+..-.+-++.- ..++..++ ++++..++....
T Consensus 25 ~~~iq~~l~~~~~~~~-~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s 103 (1109)
T PRK10929 25 EKQITQELEQAKAAKT-PAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMS 103 (1109)
T ss_pred HHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCC
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccCCCccCcccCchhHHHHHHHHH
Q 048174 855 ETSEVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEPHPITGKIPCSNEEEEKIENLS 934 (1303)
Q Consensus 855 ee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e~~~~~e~~~~~~~~~ki~~L~ 934 (1303)
....+++......++.++++++..+..+..++.....+.-....+...++++.+..+.......+ .-...+...++
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~----~l~~a~~~~lq 179 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNT----PLAQAQLTALQ 179 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCC----cccHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 048174 935 AEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRSSSTSTST 1013 (1303)
Q Consensus 935 ~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q~~~~~s~ 1013 (1303)
.|...++.+++.++..+........-.+...+-..+++...|..+..||+.+++-+.+-.+..-+-...+.++.....|
T Consensus 180 ae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~ 258 (1109)
T PRK10929 180 AESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPK 258 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCh
No 404
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=84.48 E-value=0.78 Score=50.17 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=29.8
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHHHhCCCCcCCCcHHHHHHhhch-----HHHhhcc
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAYLGGHTAAEGRSVEQQVLESNP-----VLEAFGN 147 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~~~~~~~~~~~~ie~~il~snp-----iLEAFGN 147 (1303)
|.|+|-+|||||+.++++-++ +. ..-+...+...+++.++ |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~-~~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GA-FGISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CC-EEEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999998876543 21 11122345455555432 6677776
No 405
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.46 E-value=19 Score=32.88 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 937 VEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQ 996 (1303)
Q Consensus 937 ~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~l 996 (1303)
..+|+..+..+-..+..++.++.++++....+...-..+...+.+|+.+-...+.++..+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555444444444444455555555555555554444
No 406
>PRK14527 adenylate kinase; Provisional
Probab=84.46 E-value=0.8 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.+.+.|+|.|.+|||||+.++.+.+.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999988665
No 407
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=84.37 E-value=96 Score=36.79 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETER--------RVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~--------~~~~Lq~el~~Le~kl~~le 997 (1303)
....|+....|+++|+.+..++++.+....+...+..++-.....++..... +-..|+++...|..++...+
T Consensus 290 Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekk 369 (442)
T PF06637_consen 290 LRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKK 369 (442)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888888877664444444444443333333332221 11456666666666666666
Q ss_pred HHHH
Q 048174 998 SQLK 1001 (1303)
Q Consensus 998 ~El~ 1001 (1303)
.|+.
T Consensus 370 rele 373 (442)
T PF06637_consen 370 RELE 373 (442)
T ss_pred HHHH
Confidence 6665
No 408
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=84.26 E-value=13 Score=37.66 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 931 ENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQF 997 (1303)
Q Consensus 931 ~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le 997 (1303)
+.|...+..|.++++.+-.++++..+-.+..+++..+....++.....+..++..+..|+.+|..++
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666666666666666666666666666666666666666666666666655
No 409
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=84.24 E-value=0.65 Score=49.90 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=20.8
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRY 116 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~y 116 (1303)
+--=+.++|.||||||+..|+|+.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3446789999999999999998754
No 410
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=84.22 E-value=19 Score=34.97 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 926 EEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFS 998 (1303)
Q Consensus 926 ~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~ 998 (1303)
...+...|.+.+.-|+..+-+.+.+..++..++...+..+..+....+.+.=++++|...+..|++.+...+.
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456778888999999999999999999999999999999999999999999999999999999999985544
No 411
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.06 E-value=0.69 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988887543
No 412
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.97 E-value=0.75 Score=52.65 Aligned_cols=75 Identities=28% Similarity=0.434 Sum_probs=49.9
Q ss_pred hcCceeeeccCeeEeeCCCCCCCCCCcHHHHHHhcCC-----CC--CCCCchHHHHHHHHHHHHHHcCCCeEEEEeCCcC
Q 048174 31 EINEIYTYTGNILIALNPFQPLSHLYDAYMMERYKGV-----PF--GKLSPHVFAIADAAYREMINEGKSNSILVSGESG 103 (1303)
Q Consensus 31 ~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~-----~~--~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESG 103 (1303)
.-|.-|++.|..=+-||-|+...+ |+- .++-- .+ -.+||-+..++ ...+=-|+|+|.+|
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~-~a~----vlR~Ip~~i~~~e~LglP~i~~~~~---------~~~~GLILVTGpTG 135 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGG-YAL----VLRLIPSKIPTLEELGLPPIVRELA---------ESPRGLILVTGPTG 135 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCC-cEE----EEeccCccCCCHHHcCCCHHHHHHH---------hCCCceEEEeCCCC
Confidence 346679998988889998876532 221 01110 01 13566554432 34456899999999
Q ss_pred CCchhhHHHHHHHHHH
Q 048174 104 AGKTETTKMIMRYLAY 119 (1303)
Q Consensus 104 aGKTe~~k~i~~yLa~ 119 (1303)
||||+|.--++.|+-.
T Consensus 136 SGKSTTlAamId~iN~ 151 (353)
T COG2805 136 SGKSTTLAAMIDYINK 151 (353)
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999999854
No 413
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=83.94 E-value=0.71 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.+.+.+.|.|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999988665
No 414
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.89 E-value=0.52 Score=59.39 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.+.+.|.|.|+||||||+..|++++++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999998754
No 415
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.86 E-value=0.76 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888877
No 416
>PRK12704 phosphodiesterase; Provisional
Probab=83.85 E-value=1.3e+02 Score=38.00 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=6.7
Q ss_pred CCCCCCCCCCchh
Q 048174 1045 PASANFSSFKPNA 1057 (1303)
Q Consensus 1045 ~~~~~~s~~~~~~ 1057 (1303)
|...-.|+++|--
T Consensus 250 p~~v~ls~~~~~r 262 (520)
T PRK12704 250 PEAVILSGFDPIR 262 (520)
T ss_pred CCeEEEecCChhh
Confidence 4444455555543
No 417
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.78 E-value=0.75 Score=54.12 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.7
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
...|+|+|.+|||||+.++.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 458999999999999999999987743
No 418
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=83.78 E-value=0.77 Score=51.01 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998776
No 419
>PRK06761 hypothetical protein; Provisional
Probab=83.77 E-value=0.67 Score=53.41 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.7
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 47999999999999999999999864
No 420
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=83.73 E-value=0.75 Score=50.57 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=23.3
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887654
No 421
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.72 E-value=0.55 Score=58.19 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=24.9
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.+-.++=|.||||||||+.+|.|+..+.-
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678899999999999999999988654
No 422
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=83.71 E-value=0.73 Score=54.47 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999888764
No 423
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.71 E-value=0.77 Score=52.30 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
|.|+|-||||||+.++.+...|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999888887743
No 424
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=83.70 E-value=0.64 Score=47.07 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
..+.+.|.|++|||||+..+.|...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 567999999999999998887765543
No 425
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.69 E-value=27 Score=37.50 Aligned_cols=87 Identities=16% Similarity=0.050 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 928 EKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLK----KLEETERRVYQLQDSLNRLLYCMSEQFSQLKMI 1003 (1303)
Q Consensus 928 ~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~----kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~ 1003 (1303)
.+|..|+..|.+|+.+.++|....--+...-.+-++...+.+. ........+..-++++..|+.+...|-.|+. .
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~-e 133 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENL-E 133 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H
Confidence 4455555555555555555544443333322222222222221 2333446677777778888888877777777 7
Q ss_pred HhhcccCCCCCC
Q 048174 1004 LRSSSTSTSTSI 1015 (1303)
Q Consensus 1004 l~q~~~~~s~~~ 1015 (1303)
|++-.+-+....
T Consensus 134 LKElcl~LDeer 145 (195)
T PF10226_consen 134 LKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHhccc
Confidence 777666554444
No 426
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=83.68 E-value=0.77 Score=50.76 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..|.|+..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999988765
No 427
>PF13514 AAA_27: AAA domain
Probab=83.67 E-value=2e+02 Score=39.99 Aligned_cols=32 Identities=3% Similarity=0.086 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048174 860 KECDITNKGIEVHVKECDTTDRAIEVYVKECD 891 (1303)
Q Consensus 860 ~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~ 891 (1303)
.....++.++..++.+++.++..+..++.+..
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1111)
T PF13514_consen 673 ARREQLEEELQQLEQELEEAEAELQEAQEALE 704 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554443
No 428
>PRK06893 DNA replication initiation factor; Validated
Probab=83.62 E-value=1.6 Score=48.78 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 75 HVFAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 75 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
|.. .+..+.+.+ ....+-+++|.|.||+|||..+..+.+.+..-
T Consensus 23 ~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 23 NLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred hHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 443 333344444 34556789999999999999999999887653
No 429
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=83.62 E-value=0.78 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRY 116 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~y 116 (1303)
...+.+.|.|++|||||+..+.|+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999998887654
No 430
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=83.60 E-value=0.69 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.7
Q ss_pred CeEEEEeCCcCCCchhhHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIM 114 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~ 114 (1303)
.+-|+|+|.||||||+.++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999883
No 431
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.60 E-value=1.5 Score=53.39 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=40.5
Q ss_pred CCcHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHcC-----------CCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 55 LYDAYMMERYKGVPFGKLSPHVFAIADAAYREMINEG-----------KSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 55 ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
+.++..+..|-+...-...+=+=+++..+|+++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567777766554433333334455555555433321 24689999999999999999887654
No 432
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=83.57 E-value=0.76 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.0
Q ss_pred CeEEEEeCCcCCCchhhHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMR 115 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~ 115 (1303)
...|+|.|+||+|||+++=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877775
No 433
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.53 E-value=0.92 Score=48.13 Aligned_cols=27 Identities=41% Similarity=0.565 Sum_probs=23.9
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 95 SILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
.|+++|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 588999999999999999999887653
No 434
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=83.51 E-value=0.78 Score=50.58 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..|.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999988887654
No 435
>PRK12704 phosphodiesterase; Provisional
Probab=83.43 E-value=1.4e+02 Score=37.87 Aligned_cols=7 Identities=57% Similarity=0.771 Sum_probs=3.7
Q ss_pred cchhhhh
Q 048174 1266 REIDVLR 1272 (1303)
Q Consensus 1266 ~~~~~~~ 1272 (1303)
+|+.|+=
T Consensus 468 reirv~v 474 (520)
T PRK12704 468 REIRVIV 474 (520)
T ss_pred ceEEEEe
Confidence 5555553
No 436
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.41 E-value=1 Score=52.21 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHc--------CCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 76 VFAIADAAYREMINE--------GKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 76 ifavA~~Ay~~m~~~--------~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
++.....+...++.. .+...|+|.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555555555531 245689999999999999999999998764
No 437
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.33 E-value=1.7 Score=55.11 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=40.5
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHHHHHHH-HcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 60 MMERYKGVPFGKLSPHVFAIADAAYREMI-NEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 60 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
..++|+-..+.++--|--.+ ..+..+. ..+-++++|++|+.|.|||+.++.+.+.|...
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567666555543332222 3444444 34668999999999999999999999998643
No 438
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.29 E-value=86 Score=40.49 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLY 991 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~ 991 (1303)
...++.|+.++-..+..++-++++.|+++.-+.-.+...-.++..+......||..+..|-.
T Consensus 496 ~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 496 TTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444444444444444444444444455555544444
No 439
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=83.27 E-value=0.61 Score=55.09 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.||||||||+.++.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999999998865
No 440
>PRK08727 hypothetical protein; Validated
Probab=83.27 E-value=1.6 Score=49.00 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.1
Q ss_pred cCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 90 EGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 90 ~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
....+.|+|.|.||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4456789999999999999999998887654
No 441
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=83.22 E-value=88 Score=38.02 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 931 ENLSAEVEKLKALLQAEKQRAD---DSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCM 993 (1303)
Q Consensus 931 ~~L~~E~~kLe~~leel~~~~~---ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl 993 (1303)
.-|.+||.-|+.++-+.-+-+. ++=..+++.++...--.+.....|....++.+++..|+.+.
T Consensus 406 ~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 406 RFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445544444333322 22233333333333334445555555555555555555443
No 442
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=83.22 E-value=0.74 Score=54.53 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.8
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999888765
No 443
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=83.17 E-value=0.78 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.+.+.+.|.|+||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 567899999999999999999988664
No 444
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=83.16 E-value=0.85 Score=50.06 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.1
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999988887654
No 445
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=83.16 E-value=19 Score=35.52 Aligned_cols=39 Identities=28% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 966 EKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMIL 1004 (1303)
Q Consensus 966 ~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l 1004 (1303)
..+.++++..+..+..|.++...|+.++.+++.+++.++
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445557777788888888888888888888888887444
No 446
>PRK08116 hypothetical protein; Validated
Probab=83.12 E-value=1.9 Score=49.47 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHc-CCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 76 VFAIADAAYREMINE-GKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 76 ifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
.|++|..-....... ..+..++|.|.+|+|||..+..|.++|...
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 455555443433322 345679999999999999999999999764
No 447
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.06 E-value=0.85 Score=50.15 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..|.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988887654
No 448
>PRK14974 cell division protein FtsY; Provisional
Probab=83.04 E-value=1.7 Score=51.47 Aligned_cols=31 Identities=39% Similarity=0.540 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999999999999999887643
No 449
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.01 E-value=17 Score=32.53 Aligned_cols=23 Identities=9% Similarity=0.237 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048174 930 IENLSAEVEKLKALLQAEKQRAD 952 (1303)
Q Consensus 930 i~~L~~E~~kLe~~leel~~~~~ 952 (1303)
++..-.-+..|+-++++|+.++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444444444443333
No 450
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=83.00 E-value=1.2e+02 Score=36.93 Aligned_cols=8 Identities=25% Similarity=0.198 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 048174 835 RGQEITES 842 (1303)
Q Consensus 835 LE~kl~eL 842 (1303)
|+..+++|
T Consensus 367 Lk~niEeL 374 (527)
T PF15066_consen 367 LKENIEEL 374 (527)
T ss_pred HHHHHHHH
Confidence 34444444
No 451
>PRK15453 phosphoribulokinase; Provisional
Probab=82.88 E-value=0.86 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.3
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.=-|.|+|-||||||+.++.+.+-|
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999987776544
No 452
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=82.85 E-value=1.6 Score=44.11 Aligned_cols=27 Identities=41% Similarity=0.567 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
.....|+++|+=|||||+-+|-+++.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999999887
No 453
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=82.79 E-value=0.87 Score=50.22 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887654
No 454
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.76 E-value=1.7 Score=52.76 Aligned_cols=56 Identities=14% Similarity=0.329 Sum_probs=39.3
Q ss_pred HHhcCCCCCCCCchHHHHHHHHHHHHHHc-CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 62 ERYKGVPFGKLSPHVFAIADAAYREMINE-GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 62 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
+.|+-..+.+.--|-..+ ..++++... +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345544444444343333 346666665 46789999999999999999999998854
No 455
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.75 E-value=1.5 Score=56.25 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.2
Q ss_pred HHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 85 REMINEGKSNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 85 ~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
..+.....++.|+|.|++|+|||+.++.+.++....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344456678999999999999999999998876443
No 456
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.69 E-value=1 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.9
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHH
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRY 116 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~y 116 (1303)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999987766654
No 457
>PRK12608 transcription termination factor Rho; Provisional
Probab=82.69 E-value=1.1 Score=53.40 Aligned_cols=43 Identities=21% Similarity=0.107 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 77 FAIADAAYREMINEGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 77 favA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
-.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 117 ~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 117 DDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred cchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3688889999988899999999999999999999999888754
No 458
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=82.65 E-value=1.2e+02 Score=36.54 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=4.7
Q ss_pred HHHHHHH-HhhH
Q 048174 836 GQEITES-QESQ 846 (1303)
Q Consensus 836 E~kl~eL-~rLe 846 (1303)
|..+.++ ++|+
T Consensus 258 Eqsl~dlQk~Le 269 (575)
T KOG4403|consen 258 EQSLEDLQKRLE 269 (575)
T ss_pred HHHHHHHHHHHH
Confidence 3344444 4443
No 459
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=82.61 E-value=0.98 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.4
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
..-|||+|.||||||+.++.+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35799999999999999999988653
No 460
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=82.58 E-value=1 Score=47.38 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.8
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
|.|.|.+|||||+.+..++..|...
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999999754
No 461
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=82.56 E-value=1.5 Score=47.18 Aligned_cols=29 Identities=24% Similarity=0.388 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44569999999999999999999998853
No 462
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=82.56 E-value=16 Score=35.28 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARV----------------------LSEKRLKKLEETERRVYQLQD 984 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~----------------------~~~~l~~kl~e~E~~~~~Lq~ 984 (1303)
..+++.+..+...+...+..++..+.+.+....++.. ....+.++.+..+..+..|+.
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666555555555554444444432 223344466666677777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048174 985 SLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 985 el~~Le~kl~~le~El~ 1001 (1303)
++..++.++.+++..+.
T Consensus 84 ~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 84 QLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777665
No 463
>PRK08356 hypothetical protein; Provisional
Probab=82.55 E-value=0.76 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.3
Q ss_pred eEEEEeCCcCCCchhhHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMR 115 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~ 115 (1303)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999854
No 464
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=82.53 E-value=1.9 Score=48.02 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCC--CeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 79 IADAAYREMINEGK--SNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 79 vA~~Ay~~m~~~~~--~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
.|-.|...+..... -..++|.|+||+|||.....|.+++...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34445555555433 3579999999999999988888877654
No 465
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=82.51 E-value=0.88 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEeCCcCCCchhhHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa 118 (1303)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988763
No 466
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=82.50 E-value=0.66 Score=60.12 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=26.1
Q ss_pred cCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 90 EGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 90 ~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
-...|.|.|.|+||||||+.+|+++.++.-
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346789999999999999999999988654
No 467
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=82.47 E-value=0.9 Score=49.59 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|++|||||+..+.|+..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999988887543
No 468
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=82.46 E-value=0.71 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.5
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 3599999999999999999988776
No 469
>PHA00732 hypothetical protein
Probab=82.44 E-value=0.73 Score=42.80 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=27.1
Q ss_pred ceecCCCccCCccCCCCCCCCcCCCCCccccCccccccCccccchhHHhhcc
Q 048174 1088 KWECEKCSCSEAQHGQSSCGLIVWPPKNYNCSFCRREFRSAQALGGHMNVHR 1139 (1303)
Q Consensus 1088 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~ 1139 (1303)
+|.|+.|+..-..... ..........++.|+.||+.|. .|.-|++++.
T Consensus 1 py~C~~Cgk~F~s~s~-Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFA-LKQHARRNHTLTKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHH-HHHHhhcccCCCccCCCCCEeC---ChhhhhcccC
Confidence 5899999743211100 0000000112478999999998 4778876554
No 470
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=82.44 E-value=78 Score=34.30 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 925 EEEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARV 963 (1303)
Q Consensus 925 ~~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~ 963 (1303)
++..++..|..||.+|+..+++.+.-++-...++++.-.
T Consensus 67 ~En~qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~ 105 (181)
T PF05769_consen 67 QENRQIRQLQQENRELRQSLEEHQSALELIMSKYREQMS 105 (181)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999998877776655443
No 471
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.43 E-value=49 Score=37.77 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 941 KALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQ 996 (1303)
Q Consensus 941 e~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~l 996 (1303)
+.+++.++..+.+.++++++++....+...++.+++.+...|.+.+..++.++.++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444555555555555555555555555555555555555555443
No 472
>PRK14528 adenylate kinase; Provisional
Probab=82.36 E-value=1 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.4
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998765
No 473
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=82.35 E-value=1.5 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
+.+=.|+|+|.||||||+.+..+..+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999888
No 474
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.30 E-value=0.93 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|++|||||+..|.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988887654
No 475
>PRK00698 tmk thymidylate kinase; Validated
Probab=82.19 E-value=1.2 Score=48.52 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.5
Q ss_pred CeEEEEeCCcCCCchhhHHHHHHHHHHH
Q 048174 93 SNSILVSGESGAGKTETTKMIMRYLAYL 120 (1303)
Q Consensus 93 ~QsIiisGESGaGKTe~~k~i~~yLa~~ 120 (1303)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999988643
No 476
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.19 E-value=1.5e+02 Score=37.50 Aligned_cols=138 Identities=11% Similarity=0.154 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccCC-CccCcccCchhHHHHHHHHHHH
Q 048174 858 EVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEPH-PITGKIPCSNEEEEKIENLSAE 936 (1303)
Q Consensus 858 ~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e~-~~~~e~~~~~~~~~ki~~L~~E 936 (1303)
...+...|+..++.|+.+|+..+..+..+.+........+..+..+++..+..++-. .... ...+.+..|...
T Consensus 300 ~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~------~~k~~~~~l~~~ 373 (522)
T PF05701_consen 300 AKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE------KAKEAMSELPKA 373 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc------chhhhHHHHHHH
Confidence 445555666666666666666665555555443333333334444444433322211 0000 123445667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 937 VEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 937 ~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+..+..+.+..+........+..+++.+.+.....+...+.++....+++..-+..-...-.++.
T Consensus 374 Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 374 LQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766655555555555
No 477
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=82.19 E-value=0.95 Score=49.75 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=22.9
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..+.|..++
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999888887654
No 478
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=82.17 E-value=0.93 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.2
Q ss_pred EEEeCCcCCCchhhHHHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999854
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.13 E-value=1 Score=48.27 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|++|||||+..|.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988887544
No 480
>PRK14531 adenylate kinase; Provisional
Probab=82.13 E-value=1.1 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.9
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
|-|+|.|.+|||||+.++.|.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998775
No 481
>PRK03839 putative kinase; Provisional
Probab=82.03 E-value=0.97 Score=48.34 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.7
Q ss_pred EEEEeCCcCCCchhhHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yL 117 (1303)
-|+|.|-+|||||+.++.+-+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999988775
No 482
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=82.01 E-value=1 Score=51.34 Aligned_cols=30 Identities=17% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCeEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 92 KSNSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 92 ~~QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
..-.|++.|++|+|||+.++.+-+.|..++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999886553
No 483
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=81.98 E-value=83 Score=42.25 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 859 VKECDITNKGIEVHVKECDTTDRAIEVYVKE 889 (1303)
Q Consensus 859 ~~E~~kL~~~ve~Le~qlee~e~~~~~le~e 889 (1303)
+.|.+.+..++++++.+++..+..+..+.+.
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888776666554
No 484
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.97 E-value=0.98 Score=50.42 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..|.|...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988887654
No 485
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.94 E-value=19 Score=40.86 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 927 EEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 927 ~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
.++++.+..+...|..++..++.+++.++..+..+++...++.+++.+++..+..++.....|.--|..+-+++.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666666666666666666666666666655555555555
No 486
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.93 E-value=21 Score=31.89 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEK 948 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~ 948 (1303)
.|.-|..|+++|+.....+.
T Consensus 19 TI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhH
Confidence 33334444444444443333
No 487
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.91 E-value=9.7 Score=41.95 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 950 RADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLK 1001 (1303)
Q Consensus 950 ~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~ 1001 (1303)
+++.+..+...+++++++..++++.++..+..|+++...+....++|-++.+
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3334444444444444445555555555555555555555555444444444
No 488
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.89 E-value=2.3 Score=49.03 Aligned_cols=47 Identities=32% Similarity=0.420 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHH---------cCCCeEEEEeCCcCCCchhhHHHHHHHHHHHh
Q 048174 75 HVFAIADAAYREMIN---------EGKSNSILVSGESGAGKTETTKMIMRYLAYLG 121 (1303)
Q Consensus 75 HifavA~~Ay~~m~~---------~~~~QsIiisGESGaGKTe~~k~i~~yLa~~~ 121 (1303)
.++.+..++++.++. .++.+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 356666666666542 23468999999999999999999988887543
No 489
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.89 E-value=0.44 Score=62.40 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 929 KIENLSAEVEKLKALLQAEKQRADDSARKCAEA 961 (1303)
Q Consensus 929 ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~ 961 (1303)
++..++.++..++..++.+..++.+.+.++..+
T Consensus 186 ~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 186 QIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444444333
No 490
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.85 E-value=0.44 Score=62.27 Aligned_cols=197 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccC
Q 048174 835 RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEP 913 (1303)
Q Consensus 835 LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e 913 (1303)
+..++..| +.+...+..+.+ ...+...++.++.+|+.+.+++...-..+..=++ .+..+....+++.+...+
T Consensus 244 l~~ql~~L~~el~~~e~~~~d---~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrD----ElD~lR~~a~r~~klE~~ 316 (713)
T PF05622_consen 244 LRAQLRRLREELERLEEQRDD---LKIELEELEKEIDELRQENEELQAEAREARALRD----ELDELREKADRADKLENE 316 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHH
Q ss_pred CCccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 914 HPITGKIPCSNEEEEKIENLSAEVEKLKALLQAEKQRADDSARKCAE---ARVLSEKRLKKLEETERRVYQLQDSLNRLL 990 (1303)
Q Consensus 914 ~~~~~e~~~~~~~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e---~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le 990 (1303)
..++++ ..+.+..+...+..|+.....+.+....+|.++.. .+..++...+.+.+++........+...|+
T Consensus 317 ve~YKk------KLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~ 390 (713)
T PF05622_consen 317 VEKYKK------KLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLE 390 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCC
Q 048174 991 YCMSEQFSQLKMILRSSSTSTSTSIPIVKEETFDTSDNSDASSTDSDFTFPAPAP 1045 (1303)
Q Consensus 991 ~kl~~le~El~~~l~q~~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~ 1045 (1303)
..+..+++++. .+....-...-+.-.+++....+.-........+......+++
T Consensus 391 ~e~~~L~ek~~-~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~ 444 (713)
T PF05622_consen 391 FENKQLEEKLE-ALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSS 444 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
No 491
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=81.84 E-value=0.92 Score=49.88 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.9
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
...+.+.|.|+||||||+..+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999988886543
No 492
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=81.82 E-value=0.84 Score=58.26 Aligned_cols=28 Identities=21% Similarity=0.558 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHH
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLA 118 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa 118 (1303)
.+.|.|.|.|+||||||+..|+|+.++.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999999998764
No 493
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=81.78 E-value=18 Score=44.40 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 944 LQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCM 993 (1303)
Q Consensus 944 leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl 993 (1303)
+++-+.+.+++|++++.++.+.+.+..+..+.|+++..|+.++..|+.++
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666665555555555555666666666666666555
No 494
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=81.73 E-value=0.92 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.9
Q ss_pred eEEEEeCCcCCCchhhHHHHHHHH
Q 048174 94 NSILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 94 QsIiisGESGaGKTe~~k~i~~yL 117 (1303)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 679999999999999999988776
No 495
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=81.63 E-value=0.99 Score=50.79 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.7
Q ss_pred EEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 95 SILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 95 sIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
.|+|.|-||||||+..+.|+.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 6889999999999999999988764
No 496
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.62 E-value=55 Score=36.70 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhcchhhhhhccCCCccCcccCchhHHHHHHHHHHHHHHHHH
Q 048174 863 DITNKGIEVHVKECDTTDRAIEVYVKECDTKDRATEVHVEDCDDIDRAIEPHPITGKIPCSNEEEEKIENLSAEVEKLKA 942 (1303)
Q Consensus 863 ~kL~~~ve~Le~qlee~e~~~~~le~e~~~~~~~~~~~~ee~~~~k~~l~e~~~~~e~~~~~~~~~ki~~L~~E~~kLe~ 942 (1303)
+-|+..+.+++.++.+.+.....+..... ....+++.+....++++.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k---------------------------------~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQK---------------------------------QLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048174 943 LLQAEKQRAD-----DSARKCAEARVLSEKRLKKLEETERRVYQLQDSLNRLLYCMSEQFSQLKMILRS 1006 (1303)
Q Consensus 943 ~leel~~~~~-----ele~~~~e~~~~~~~l~~kl~e~E~~~~~Lq~el~~Le~kl~~le~El~~~l~q 1006 (1303)
.-......-+ +.-.+...++.........+......+.+|+..+..|+.++.+++.... .++.
T Consensus 74 ~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~-~l~a 141 (225)
T COG1842 74 KAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE-ALKA 141 (225)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
No 497
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=81.61 E-value=2.5 Score=43.87 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=26.3
Q ss_pred cCCCeEEEEeCCcCCCchhhHHHHHHHHHH
Q 048174 90 EGKSNSILVSGESGAGKTETTKMIMRYLAY 119 (1303)
Q Consensus 90 ~~~~QsIiisGESGaGKTe~~k~i~~yLa~ 119 (1303)
-...=.|+++|+=|||||+-+|-|.+.|..
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 345668999999999999999999999874
No 498
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=81.55 E-value=65 Score=41.88 Aligned_cols=136 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcchhhhhhhh
Q 048174 826 LKMTAKKEE-RGQEITES-QESQEAVQYIVDETSEVKECDITNKGIEVHVKECD---TTDRAIEVYVKECDTKDRATEVH 900 (1303)
Q Consensus 826 lk~aa~~~~-LE~kl~eL-~rLe~ee~~r~eee~~~~E~~kL~~~ve~Le~qle---e~e~~~~~le~e~~~~~~~~~~~ 900 (1303)
+..+-++.. ++.++..+ ..|+.......+ ...+...++.+...|+.++. +.+.....++..+.
T Consensus 170 ~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--------- 237 (670)
T KOG0239|consen 170 LDLALKESLKLESDLGDLVTELEHVTNSISE---LESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLES--------- 237 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhh---------
Q ss_pred hhcchhhhhhccCCCccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048174 901 VEDCDDIDRAIEPHPITGKIPCSNEEEEKIENLSAEVEKLKALLQAEKQRADDSARKCAEARVLSEKRLKKLEETERRVY 980 (1303)
Q Consensus 901 ~ee~~~~k~~l~e~~~~~e~~~~~~~~~ki~~L~~E~~kLe~~leel~~~~~ele~~~~e~~~~~~~l~~kl~e~E~~~~ 980 (1303)
...+++..|..++.+|++.+.++......+.+++.+..+.+..+...+++.+..+.
T Consensus 238 ------------------------~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 238 ------------------------TIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH---HHHHHHHHHHHHHH
Q 048174 981 QLQ---DSLNRLLYCMSEQF 997 (1303)
Q Consensus 981 ~Lq---~el~~Le~kl~~le 997 (1303)
.-. .+..+|-.++.+|+
T Consensus 294 ~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 294 EKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHhh
No 499
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.51 E-value=1.3 Score=52.13 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCCeEEEEeCCcCCCchhhHHHHHHHHHHHhCC
Q 048174 91 GKSNSILVSGESGAGKTETTKMIMRYLAYLGGH 123 (1303)
Q Consensus 91 ~~~QsIiisGESGaGKTe~~k~i~~yLa~~~~~ 123 (1303)
+..+.|.+.|.+|||||+++..+..++...++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~ 144 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK 144 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCe
No 500
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=81.43 E-value=0.98 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=0.0
Q ss_pred EEEeCCcCCCchhhHHHHHHHH
Q 048174 96 ILVSGESGAGKTETTKMIMRYL 117 (1303)
Q Consensus 96 IiisGESGaGKTe~~k~i~~yL 117 (1303)
|.|+|.||||||+.++.|...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Done!