BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048175
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1
Length = 191
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 89/120 (74%), Gaps = 12/120 (10%)
Query: 7 WMLNLLMGFLSPQIDLE---YSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
++LNLL+GFLSP +D E SDGP+LPT GSDEF+PF+R L E +FCI FL
Sbjct: 71 YLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFL 130
Query: 55 MTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
MTFFS FDV VFWPILL YW+ LF LTMRRQI HMIKY+Y+PFSF KQ+Y G+ S S A
Sbjct: 131 MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGRSSSGSRA 190
>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2
Length = 195
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 88/119 (73%), Gaps = 11/119 (9%)
Query: 7 WMLNLLMGFLSPQID--LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
++LNLL+GFLSP +D LE SDG TLPT GSDEF+PF+R L E +FCI FLM
Sbjct: 71 YLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLM 130
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
TFFS FDV VFWPILL YW+ LF LTMRRQI HMIK++Y+PFS KQ+Y G+ S++
Sbjct: 131 TFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSANSG 189
>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1
Length = 212
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 88/122 (72%), Gaps = 12/122 (9%)
Query: 4 INHWMLNLLMGFLSPQIDLEYS--DGPTLPTHGSDEFRPFVRCLLE---------SFCIG 52
I ++LNL++ FLSPQ D E S G +LPT SDE+RPFVR L E +F IG
Sbjct: 90 IGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIG 149
Query: 53 FLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSS 112
F+MTFF FDV VFWPILLFYW+ LF LTMR+QI HMIKYRYVPFSF K++Y GK P+ +
Sbjct: 150 FMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPAPT 208
Query: 113 DA 114
++
Sbjct: 209 ES 210
>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1
Length = 196
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)
Query: 9 LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
LNL + FLSP++D + DGP+LPT ++EFRPF+R L E + +
Sbjct: 76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMIC 135
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+ K+RY GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187
>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1
Length = 196
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)
Query: 9 LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
LNL + FLSP++D + DGP+LPT ++EFRPF+R L E + +
Sbjct: 76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMIC 135
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+ K+RY GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187
>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1
Length = 196
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)
Query: 9 LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
LNL + FLSP++D + DGP+LPT ++EFRPF+R L E + +
Sbjct: 76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+ K+RY GK
Sbjct: 136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187
>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1
Length = 196
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)
Query: 9 LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
LNL + FLSP++D + DGP+LPT ++EFRPF+R L E + +
Sbjct: 76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+ K+RY GK
Sbjct: 136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187
>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2
Length = 221
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 73/106 (68%), Gaps = 11/106 (10%)
Query: 7 WMLNLLMGFLSPQID--LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
++LNLL+GFLSP++D LE D +LP SDE++PFVR L E +F + F+M
Sbjct: 75 YILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVM 134
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVK 101
TFFS DV VFWPILL YWL L++LTM+R I+HM KYRY PF K
Sbjct: 135 TFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180
>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1
Length = 196
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 13/112 (11%)
Query: 9 LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
LNL + FLSP++D + DGP+LPT ++EFRPF+R L E +
Sbjct: 76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMAC 135
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+ K++Y GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGK 187
>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2
Length = 196
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 13/112 (11%)
Query: 9 LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
LNL + FLSP++D + DGP+LPT ++EFRPF+R L E + +
Sbjct: 76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135
Query: 56 TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+ K+ Y GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187
>sp|P52879|RER1_CAEEL Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1
Length = 191
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 14/105 (13%)
Query: 17 SPQID--LEYSD---GPTLPTHGSDEFRPFVRCL---------LESFCIGFLMTFFSAFD 62
+P ID LE+ D GP LP+ +DEFRPF+R L +++ I TFF FD
Sbjct: 78 TPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFD 137
Query: 63 VHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
V VFWPIL+ Y+ L LT++RQIMHMIKYRY+PF+ K R GK
Sbjct: 138 VPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGKPRMAGK 182
>sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RER1 PE=1 SV=2
Length = 188
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 13/111 (11%)
Query: 8 MLNLLMGFLSPQIDL----EYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
+LN + FL+P+ D+ + + S+EFRPF+R L E + I L
Sbjct: 74 LLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLL 133
Query: 55 MTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYD 105
++ FS FD+ VFWPILL Y++ LF LTMRRQI HMIKYRY+P K++Y
Sbjct: 134 LSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDIGKKKYS 184
>sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1
Length = 188
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 13/111 (11%)
Query: 8 MLNLLMGFLSPQIDL----EYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
+LN + FL+P+ D+ + + S+EFRPF+R L E + I +
Sbjct: 74 LLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLV 133
Query: 55 MTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYD 105
++ FS FD+ VFWPILL Y++ LF LTMRRQI HM+KYRY+P K++Y
Sbjct: 134 LSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDIGKKKYS 184
>sp|Q10358|RER1_SCHPO Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rer1 PE=3 SV=1
Length = 184
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 65/116 (56%), Gaps = 19/116 (16%)
Query: 7 WMLNLLMGFLSPQID---------LEYSDGPTLPTHGSDEFRPFVRCLLE---------S 48
++LNL + FL+P+ D E +G LPT DEFRPF+R L E +
Sbjct: 67 YLLNLFLAFLTPKFDPSVEQAMKDEEIEEG-VLPTSKDDEFRPFIRRLPEFKFWYSSMRA 125
Query: 49 FCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRY 104
+ +FF FDV VFWPIL+ Y+L L RRQI HM+KYRYVPF K+++
Sbjct: 126 TLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKKKF 181
>sp|Q54D10|RER1_DICDI Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1
Length = 188
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 14/111 (12%)
Query: 8 MLNLLMGFLSPQID--LEYSDGPTLPT---HGSDEFRPFVRCLLE---------SFCIGF 53
+L + FLSP+ D LE G +LPT DE +PF+R L E + I
Sbjct: 73 LLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISI 132
Query: 54 LMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRY 104
TF D+ VFWPILL Y++ +F++TM++QI HMIKY+Y+PF+ K+ Y
Sbjct: 133 FCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTY 183
>sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=mfd PE=3 SV=1
Length = 1169
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 35 SDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFY---WLTLFTLTMRRQIMHMIK 91
+ E F++ L+ES GF+ F +D F +L Y + TLFT TM Q+ H+IK
Sbjct: 320 TTEVDDFIQNLIES-GNGFIGQSFMQYDG--FESLLKDYPVTYFTLFTSTMPVQLQHIIK 376
Query: 92 YRYVPFSFVKQRYD 105
+ P +YD
Sbjct: 377 FSCKPVQQFYGQYD 390
>sp|Q9ZQ98|U73C2_ARATH UDP-glycosyltransferase 73C2 OS=Arabidopsis thaliana GN=UGT73C2
PE=3 SV=1
Length = 496
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 36 DEFRPFVRCLLESFCIGFLMTFFSAFDVH--VFWPILLFYWLTLFTLTMRRQIMHMIK-- 91
+E +P CL+ FC+ + F++ VF + F L++ L I+H +K
Sbjct: 118 EEMKPKPSCLISDFCLPYTSKIAKRFNIPKIVFHGVSCFCLLSMHILHRNHNILHALKSD 177
Query: 92 --YRYVPFSFVKQRYDGKMPSSSDAMSTDDW 120
Y VP SF + K+ + + DW
Sbjct: 178 KEYFLVP-SFPDRVEFTKLQVTVKTNFSGDW 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.146 0.500
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,808,108
Number of Sequences: 539616
Number of extensions: 1875249
Number of successful extensions: 3938
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3894
Number of HSP's gapped (non-prelim): 19
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)