Query 048175
Match_columns 134
No_of_seqs 109 out of 192
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 46.8 27 0.00091 20.3 3.6 27 66-93 6-32 (37)
2 3r84_A Mediator of RNA polymer 30.5 25 0.00085 24.6 1.9 24 79-102 60-86 (86)
3 2pif_A UPF0317 protein pspto_5 25.7 9.9 0.00034 31.7 -1.0 7 62-68 225-231 (276)
4 2hac_A T-cell surface glycopro 23.5 48 0.0016 19.7 2.0 18 69-86 11-28 (33)
5 1v74_A Colicin D; colicin D - 20.9 39 0.0013 24.7 1.5 12 83-94 12-23 (107)
6 1u84_A Hypothetical protein; s 16.1 79 0.0027 22.1 2.1 23 82-105 9-31 (90)
7 3k3f_A UREA transporter; membr 15.9 1.1E+02 0.0039 25.4 3.4 24 57-80 287-311 (340)
8 3fcn_A AN alpha-helical protei 13.6 71 0.0024 24.4 1.4 17 82-98 62-78 (164)
9 2l5b_A Activator of apoptosis 13.3 53 0.0018 19.3 0.5 9 63-71 5-13 (32)
10 4aw6_A CAAX prenyl protease 1 12.9 2.3E+02 0.008 24.5 4.6 19 81-99 37-55 (482)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=46.77 E-value=27 Score=20.28 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048175 66 FWPILLFYWLTLFTLTMRRQIMHMIKYR 93 (134)
Q Consensus 66 FWPILl~YFi~Lf~lTMrrqI~HMIKYk 93 (134)
++|++++ +++++++..|.|-|...+++
T Consensus 6 ~l~~v~~-~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 6 ILMLVVF-GLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHH-HHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHhhhHHHHHHHHH
Confidence 4554443 45566677788888877764
No 2
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=30.49 E-value=25 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=15.0
Q ss_pred HHHHHHHHHHH---HHhcccCCccccc
Q 048175 79 TLTMRRQIMHM---IKYRYVPFSFVKQ 102 (134)
Q Consensus 79 ~lTMrrqI~HM---IKYkYvPf~~gK~ 102 (134)
...|||||++| |--+-+|-+..|+
T Consensus 60 ~v~LrkEIk~LdEnig~~~LPinv~~k 86 (86)
T 3r84_A 60 TTQLRKEIQLLDENVGTRLLPINVNKK 86 (86)
T ss_dssp HHHHHHHHHHHHHTBTTTBCCC-----
T ss_pred HHHHHHHHHHHHHccCCeeecccCCCC
Confidence 46789999999 5567777766654
No 3
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=25.66 E-value=9.9 Score=31.72 Aligned_cols=7 Identities=57% Similarity=1.422 Sum_probs=5.6
Q ss_pred ccchhhH
Q 048175 62 DVHVFWP 68 (134)
Q Consensus 62 DIPVFWP 68 (134)
||||||+
T Consensus 225 eVPVFWa 231 (276)
T 2pif_A 225 EVPVFWA 231 (276)
T ss_dssp EEEEEEE
T ss_pred CcceEec
Confidence 4899996
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=23.49 E-value=48 Score=19.72 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048175 69 ILLFYWLTLFTLTMRRQI 86 (134)
Q Consensus 69 ILl~YFi~Lf~lTMrrqI 86 (134)
||++|=|++..+-.|..+
T Consensus 11 iL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 11 ILFIYGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 799999999999988653
No 5
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=20.92 E-value=39 Score=24.68 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcc
Q 048175 83 RRQIMHMIKYRY 94 (134)
Q Consensus 83 rrqI~HMIKYkY 94 (134)
|||++||.||++
T Consensus 12 ~~qLqkkfkHa~ 23 (107)
T 1v74_A 12 RKQLDKKYKHAG 23 (107)
T ss_dssp HHHHHHHGGGGG
T ss_pred HHHHHhHhcccc
Confidence 799999999764
No 6
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=16.10 E-value=79 Score=22.06 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcccCCcccccccC
Q 048175 82 MRRQIMHMIKYRYVPFSFVKQRYD 105 (134)
Q Consensus 82 MrrqI~HMIKYkYvPf~~gK~~Y~ 105 (134)
|.+++.|+|+ .+-||..|+.-|.
T Consensus 9 ~~~~~~~iI~-~WDPf~~g~D~Y~ 31 (90)
T 1u84_A 9 LNRLLLEWIG-AWDPFGLGKDAYD 31 (90)
T ss_dssp HHHHHHHHHH-HHCTTSSCGGGGH
T ss_pred HHHHHHHHHH-cCCCCcCCCccch
Confidence 7788999998 5899999988874
No 7
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=15.92 E-value=1.1e+02 Score=25.40 Aligned_cols=24 Identities=29% Similarity=0.819 Sum_probs=17.6
Q ss_pred hhcccccchh-hHHHHHHHHHHHHH
Q 048175 57 FFSAFDVHVF-WPILLFYWLTLFTL 80 (134)
Q Consensus 57 fF~~fDIPVF-WPILl~YFi~Lf~l 80 (134)
++..+++|++ ||.-+.=|++|..-
T Consensus 287 ~l~~~glP~lT~PFvl~twl~ll~~ 311 (340)
T 3k3f_A 287 LLSPIGMPALTWPFIVVTWLFLFAG 311 (340)
T ss_dssp HTGGGTCCCTTHHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCHhHHHHHHHHHHHh
Confidence 4556788886 88888888777543
No 8
>3fcn_A AN alpha-helical protein of unknown function (PFA; DUF29 family protein, structural genomics; HET: MSE; 1.45A {Rhodospirillum rubrum atcc 11170}
Probab=13.62 E-value=71 Score=24.35 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcccCCc
Q 048175 82 MRRQIMHMIKYRYVPFS 98 (134)
Q Consensus 82 MrrqI~HMIKYkYvPf~ 98 (134)
+++.|.|+.|++|.|=.
T Consensus 62 L~~Ll~HLLKwqyqpe~ 78 (164)
T 3fcn_A 62 VRQICVRVIMAMSAPEA 78 (164)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 46778999999999843
No 9
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=13.32 E-value=53 Score=19.30 Aligned_cols=9 Identities=33% Similarity=1.047 Sum_probs=7.2
Q ss_pred cchhhHHHH
Q 048175 63 VHVFWPILL 71 (134)
Q Consensus 63 IPVFWPILl 71 (134)
+|.|||-|-
T Consensus 5 lp~yw~wlc 13 (32)
T 2l5b_A 5 LPTYWPWLC 13 (32)
T ss_dssp CCCCHHHHH
T ss_pred cccchHHHH
Confidence 789999764
No 10
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=12.87 E-value=2.3e+02 Score=24.45 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcccCCcc
Q 048175 81 TMRRQIMHMIKYRYVPFSF 99 (134)
Q Consensus 81 TMrrqI~HMIKYkYvPf~~ 99 (134)
...||++|..+..-+|=..
T Consensus 37 L~~RQ~~~~~~~~~vP~~l 55 (482)
T 4aw6_A 37 LAQRQRRIYKTTTHVPPEL 55 (482)
T ss_dssp HHHHHHHHHHHCCSCCSGG
T ss_pred HHHHHHHHHhccCCCCHHH
Confidence 3489999998887788544
Done!