Query 048178
Match_columns 376
No_of_seqs 137 out of 1558
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.1E-34 4.6E-39 252.4 27.9 216 105-330 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 3.8E-15 8.2E-20 123.1 16.4 138 211-350 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 6.2E-14 1.3E-18 111.0 14.3 105 211-316 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 3.3E-12 7.1E-17 116.3 22.8 304 3-336 1-354 (373)
5 PHA02713 hypothetical protein; 99.4 3.1E-11 6.7E-16 118.7 22.2 213 105-340 299-545 (557)
6 PHA02713 hypothetical protein; 99.3 2E-10 4.3E-15 113.0 21.3 195 120-336 273-497 (557)
7 KOG4441 Proteins containing BT 99.3 1.9E-10 4.2E-15 112.8 19.8 210 104-337 327-555 (571)
8 PHA02790 Kelch-like protein; P 99.3 9.3E-10 2E-14 106.7 23.0 195 108-335 270-477 (480)
9 KOG4441 Proteins containing BT 99.3 3.8E-10 8.1E-15 110.8 19.1 196 119-336 301-507 (571)
10 PHA03098 kelch-like protein; P 99.2 1.9E-09 4.1E-14 106.4 22.3 195 120-337 312-520 (534)
11 PLN02153 epithiospecifier prot 99.1 3.2E-08 6.9E-13 92.0 23.9 205 119-337 50-293 (341)
12 PLN02193 nitrile-specifier pro 99.0 8.5E-08 1.9E-12 92.8 23.6 204 120-337 194-419 (470)
13 TIGR03547 muta_rot_YjhT mutatr 99.0 1.7E-07 3.7E-12 87.3 22.1 214 107-336 15-306 (346)
14 TIGR03548 mutarot_permut cycli 98.9 4.7E-07 1E-11 83.5 23.3 151 182-336 87-287 (323)
15 PHA02790 Kelch-like protein; P 98.9 3.7E-08 8E-13 95.6 16.3 164 182-356 286-454 (480)
16 PHA03098 kelch-like protein; P 98.9 6.8E-08 1.5E-12 95.5 18.3 214 120-356 265-495 (534)
17 PF12937 F-box-like: F-box-lik 98.9 5.5E-10 1.2E-14 71.3 1.8 43 6-48 1-43 (47)
18 PRK14131 N-acetylneuraminic ac 98.9 1E-06 2.3E-11 82.9 24.4 150 183-334 189-374 (376)
19 PLN02193 nitrile-specifier pro 98.9 7.1E-07 1.5E-11 86.4 23.8 170 183-356 193-385 (470)
20 PRK14131 N-acetylneuraminic ac 98.9 6E-07 1.3E-11 84.5 22.5 237 105-356 34-351 (376)
21 PLN02153 epithiospecifier prot 98.9 7.4E-07 1.6E-11 82.8 22.4 151 183-337 50-234 (341)
22 TIGR03547 muta_rot_YjhT mutatr 98.8 3.4E-06 7.4E-11 78.6 22.9 134 183-318 168-329 (346)
23 PF00646 F-box: F-box domain; 98.7 6.6E-09 1.4E-13 66.7 2.4 45 6-50 3-47 (48)
24 smart00256 FBOX A Receptor for 98.7 4.2E-09 9E-14 65.2 0.9 39 9-47 1-39 (41)
25 TIGR03548 mutarot_permut cycli 98.7 3.7E-06 8.1E-11 77.6 20.8 180 119-318 88-311 (323)
26 KOG1230 Protein containing rep 98.2 0.00013 2.8E-09 66.4 16.2 211 118-340 97-352 (521)
27 KOG4693 Uncharacterized conser 98.0 0.00021 4.5E-09 61.4 13.0 211 118-340 43-288 (392)
28 KOG4693 Uncharacterized conser 97.9 0.00025 5.5E-09 60.9 12.3 134 182-318 156-310 (392)
29 KOG1230 Protein containing rep 97.8 0.002 4.4E-08 58.8 17.0 154 183-336 98-288 (521)
30 KOG0379 Kelch repeat-containin 97.7 0.0045 9.8E-08 60.2 18.2 207 120-339 89-312 (482)
31 KOG2120 SCF ubiquitin ligase, 97.2 9.9E-05 2.1E-09 64.7 0.6 42 5-46 97-138 (419)
32 KOG0379 Kelch repeat-containin 97.2 0.026 5.7E-07 54.9 17.4 152 184-339 89-260 (482)
33 PF13964 Kelch_6: Kelch motif 96.4 0.0089 1.9E-07 38.2 5.0 42 209-250 5-48 (50)
34 KOG2997 F-box protein FBX9 [Ge 96.3 0.0015 3.3E-08 57.6 1.2 45 7-51 108-157 (366)
35 PF02191 OLF: Olfactomedin-lik 96.0 0.51 1.1E-05 41.6 15.3 121 208-338 71-213 (250)
36 smart00284 OLF Olfactomedin-li 95.6 0.89 1.9E-05 39.9 15.0 121 208-338 76-218 (255)
37 KOG0281 Beta-TrCP (transducin 95.4 0.0077 1.7E-07 53.8 1.8 44 7-50 76-123 (499)
38 PF01344 Kelch_1: Kelch motif; 95.4 0.045 9.9E-07 34.2 5.0 40 210-249 6-47 (47)
39 COG4257 Vgb Streptogramin lyas 94.7 0.5 1.1E-05 41.5 10.6 132 96-253 186-319 (353)
40 PF07646 Kelch_2: Kelch motif; 94.2 0.15 3.3E-06 32.3 5.0 39 210-248 6-47 (49)
41 TIGR01640 F_box_assoc_1 F-box 93.4 3.3 7.3E-05 35.8 13.8 117 213-338 3-137 (230)
42 KOG0274 Cdc4 and related F-box 93.0 10 0.00022 37.6 20.4 282 6-331 108-403 (537)
43 PF05096 Glu_cyclase_2: Glutam 92.9 5.2 0.00011 35.4 13.8 111 214-337 54-167 (264)
44 PF13964 Kelch_6: Kelch motif 92.8 0.31 6.7E-06 30.9 4.8 22 119-140 28-49 (50)
45 COG4257 Vgb Streptogramin lyas 92.5 7.1 0.00015 34.6 14.7 217 107-338 70-315 (353)
46 KOG4152 Host cell transcriptio 92.5 4.3 9.3E-05 38.9 13.4 203 119-337 57-311 (830)
47 PF13360 PQQ_2: PQQ-like domai 92.5 6.4 0.00014 33.9 22.7 188 108-334 35-236 (238)
48 PF07250 Glyoxal_oxid_N: Glyox 92.0 4.8 0.00011 35.2 12.6 165 182-354 45-224 (243)
49 PF07893 DUF1668: Protein of u 91.7 3.8 8.1E-05 38.1 12.3 131 108-254 75-225 (342)
50 KOG2055 WD40 repeat protein [G 91.3 5.1 0.00011 37.7 12.3 143 182-334 234-380 (514)
51 PF02897 Peptidase_S9_N: Proly 91.3 14 0.0003 35.2 19.1 146 183-336 252-412 (414)
52 PF13418 Kelch_4: Galactose ox 90.6 0.43 9.3E-06 30.0 3.6 40 210-249 6-48 (49)
53 smart00612 Kelch Kelch domain. 90.4 0.91 2E-05 27.8 5.0 32 230-264 14-46 (47)
54 PF08450 SGL: SMP-30/Gluconola 90.1 12 0.00026 32.6 23.3 207 108-347 10-232 (246)
55 KOG0294 WD40 repeat-containing 89.8 15 0.00032 33.1 13.9 146 208-376 45-197 (362)
56 PF13360 PQQ_2: PQQ-like domai 89.6 13 0.00027 32.0 16.9 136 184-333 4-145 (238)
57 PF10282 Lactonase: Lactonase, 89.2 19 0.0004 33.5 16.3 124 215-347 154-299 (345)
58 PF01344 Kelch_1: Kelch motif; 88.8 0.87 1.9E-05 28.2 3.9 23 180-202 25-47 (47)
59 KOG0310 Conserved WD40 repeat- 88.4 24 0.00051 33.7 14.8 159 182-358 47-217 (487)
60 PF13415 Kelch_3: Galactose ox 87.6 2 4.4E-05 26.9 5.1 39 215-253 1-42 (49)
61 PRK11138 outer membrane biogen 87.5 26 0.00056 33.1 21.4 186 107-332 118-316 (394)
62 PLN02772 guanylate kinase 87.0 4.2 9E-05 38.2 8.7 74 209-286 28-107 (398)
63 PF07762 DUF1618: Protein of u 86.0 6.2 0.00014 30.8 8.2 68 232-300 7-100 (131)
64 PF06433 Me-amine-dh_H: Methyl 85.3 17 0.00037 33.4 11.5 117 210-333 188-325 (342)
65 smart00612 Kelch Kelch domain. 85.0 1.2 2.7E-05 27.1 3.1 22 182-203 14-35 (47)
66 KOG4341 F-box protein containi 84.2 0.38 8.2E-06 44.8 0.5 39 6-44 72-110 (483)
67 COG3055 Uncharacterized protei 83.5 37 0.0008 31.3 13.0 133 182-317 195-356 (381)
68 KOG3545 Olfactomedin and relat 83.3 25 0.00054 30.7 11.0 121 208-338 70-212 (249)
69 PRK11138 outer membrane biogen 82.2 46 0.00099 31.4 22.1 105 209-333 250-358 (394)
70 TIGR03300 assembly_YfgL outer 81.4 47 0.001 31.1 22.7 134 183-332 155-301 (377)
71 PF13418 Kelch_4: Galactose ox 81.3 2.7 5.7E-05 26.3 3.5 21 182-202 28-48 (49)
72 PF07893 DUF1668: Protein of u 80.2 50 0.0011 30.7 13.2 101 232-336 87-215 (342)
73 PF08450 SGL: SMP-30/Gluconola 79.9 40 0.00087 29.3 15.0 104 215-335 11-129 (246)
74 cd01206 Homer Homer type EVH1 79.8 6 0.00013 29.6 5.3 40 119-169 11-51 (111)
75 PF07646 Kelch_2: Kelch motif; 79.6 3.9 8.5E-05 25.6 3.9 22 180-201 27-48 (49)
76 PRK11028 6-phosphogluconolacto 78.8 52 0.0011 30.0 14.7 135 182-329 11-157 (330)
77 TIGR03300 assembly_YfgL outer 78.8 57 0.0012 30.5 21.0 182 108-333 64-264 (377)
78 PF05096 Glu_cyclase_2: Glutam 78.2 49 0.0011 29.4 14.0 140 181-337 66-213 (264)
79 COG3055 Uncharacterized protei 76.2 11 0.00023 34.7 6.9 87 183-272 58-154 (381)
80 KOG2106 Uncharacterized conser 74.9 84 0.0018 30.5 21.0 60 274-338 387-446 (626)
81 COG2706 3-carboxymuconate cycl 74.4 72 0.0016 29.4 15.6 116 215-338 155-286 (346)
82 KOG0299 U3 snoRNP-associated p 74.1 83 0.0018 30.0 16.0 58 256-316 382-442 (479)
83 KOG0289 mRNA splicing factor [ 73.1 87 0.0019 29.7 12.3 123 182-318 368-495 (506)
84 smart00564 PQQ beta-propeller 72.8 13 0.00028 20.6 4.5 26 309-334 5-30 (33)
85 TIGR03866 PQQ_ABC_repeats PQQ- 72.4 68 0.0015 28.2 22.5 116 215-338 167-290 (300)
86 PF13415 Kelch_3: Galactose ox 71.5 5.9 0.00013 24.8 3.1 23 119-141 19-41 (49)
87 PF03088 Str_synth: Strictosid 71.1 9.1 0.0002 27.7 4.3 31 305-335 3-52 (89)
88 COG1520 FOG: WD40-like repeat 69.1 1E+02 0.0022 28.8 14.2 135 182-333 34-176 (370)
89 KOG0649 WD40 repeat protein [G 67.1 88 0.0019 27.4 13.8 131 216-359 127-267 (325)
90 PF01011 PQQ: PQQ enzyme repea 66.1 13 0.00028 21.8 3.6 24 311-334 1-24 (38)
91 PF13088 BNR_2: BNR repeat-lik 65.5 96 0.0021 27.3 13.2 128 183-315 133-275 (275)
92 PF10282 Lactonase: Lactonase, 64.7 1.2E+02 0.0026 28.1 19.7 147 182-336 165-332 (345)
93 PF13013 F-box-like_2: F-box-l 64.7 2.8 6.2E-05 31.6 0.6 30 5-34 21-50 (109)
94 COG3386 Gluconolactonase [Carb 62.3 1.3E+02 0.0027 27.6 11.7 107 216-335 37-158 (307)
95 KOG2048 WD40 repeat protein [G 62.2 1.6E+02 0.0034 29.7 11.9 101 264-366 440-548 (691)
96 KOG0316 Conserved WD40 repeat- 61.2 1.1E+02 0.0025 26.6 14.1 182 108-333 27-218 (307)
97 PF12768 Rax2: Cortical protei 61.1 1.2E+02 0.0026 27.3 10.3 107 181-294 14-130 (281)
98 PRK11028 6-phosphogluconolacto 60.1 1.4E+02 0.003 27.2 14.3 148 182-336 147-314 (330)
99 KOG4378 Nuclear protein COP1 [ 59.6 26 0.00057 33.7 6.0 55 276-331 186-283 (673)
100 KOG2315 Predicted translation 59.3 1.8E+02 0.004 28.5 14.7 143 109-286 230-391 (566)
101 COG4946 Uncharacterized protei 59.2 59 0.0013 31.3 8.1 87 241-338 216-305 (668)
102 PF13570 PQQ_3: PQQ-like domai 59.0 19 0.00041 21.2 3.5 21 309-329 20-40 (40)
103 KOG4152 Host cell transcriptio 52.5 14 0.0003 35.7 3.0 91 194-289 18-118 (830)
104 KOG0279 G protein beta subunit 52.4 72 0.0016 28.4 7.1 73 259-337 197-272 (315)
105 TIGR03866 PQQ_ABC_repeats PQQ- 51.0 1.7E+02 0.0037 25.6 24.9 182 116-334 50-243 (300)
106 TIGR03074 PQQ_membr_DH membran 50.8 3.2E+02 0.0069 28.7 13.1 32 208-245 187-220 (764)
107 PTZ00420 coronin; Provisional 49.4 2.9E+02 0.0063 27.8 22.8 144 182-336 147-301 (568)
108 KOG0647 mRNA export protein (c 48.8 2.1E+02 0.0045 26.0 9.6 64 276-340 49-114 (347)
109 TIGR03075 PQQ_enz_alc_DH PQQ-d 48.8 2.8E+02 0.0062 27.5 13.0 113 209-334 63-195 (527)
110 PF02239 Cytochrom_D1: Cytochr 48.7 2.4E+02 0.0051 26.5 12.8 107 216-336 5-117 (369)
111 KOG0772 Uncharacterized conser 48.4 38 0.00083 32.8 5.2 88 261-354 372-472 (641)
112 PLN02772 guanylate kinase 47.5 1.6E+02 0.0035 27.9 9.2 60 258-317 28-93 (398)
113 PF08268 FBA_3: F-box associat 46.6 60 0.0013 25.0 5.5 51 307-357 2-63 (129)
114 KOG0292 Vesicle coat complex C 43.9 2.4E+02 0.0052 29.7 10.1 77 259-336 210-289 (1202)
115 cd01207 Ena-Vasp Enabled-VASP- 43.5 70 0.0015 24.2 5.1 41 120-168 10-50 (111)
116 KOG3926 F-box proteins [Amino 43.2 17 0.00036 32.1 1.9 45 3-47 199-244 (332)
117 KOG2437 Muskelin [Signal trans 42.8 52 0.0011 31.9 5.2 142 123-272 233-393 (723)
118 COG2706 3-carboxymuconate cycl 41.3 2.9E+02 0.0064 25.5 23.0 150 182-337 166-332 (346)
119 KOG2502 Tub family proteins [G 41.1 19 0.00042 32.9 2.1 38 5-42 44-89 (355)
120 KOG1963 WD40 repeat protein [G 41.1 1.7E+02 0.0038 30.2 8.8 94 232-330 433-540 (792)
121 KOG0295 WD40 repeat-containing 40.8 2.4E+02 0.0053 26.2 8.8 58 276-335 313-371 (406)
122 PRK05137 tolB translocation pr 38.5 3.6E+02 0.0079 25.8 22.9 188 118-337 225-421 (435)
123 PLN00181 protein SPA1-RELATED; 37.0 5.2E+02 0.011 27.1 24.9 186 110-330 546-740 (793)
124 TIGR03075 PQQ_enz_alc_DH PQQ-d 36.6 4.4E+02 0.0095 26.2 13.8 127 109-250 69-202 (527)
125 TIGR02658 TTQ_MADH_Hv methylam 34.9 3.8E+02 0.0083 25.0 21.3 116 212-335 202-338 (352)
126 KOG2096 WD40 repeat protein [G 34.8 3.7E+02 0.0079 24.7 9.9 35 303-337 191-226 (420)
127 KOG0303 Actin-binding protein 34.5 4.1E+02 0.0088 25.2 12.0 118 212-335 181-303 (472)
128 PF13854 Kelch_5: Kelch motif 34.3 94 0.002 18.5 3.8 28 258-285 8-38 (42)
129 PF07569 Hira: TUP1-like enhan 33.5 2.8E+02 0.0061 23.8 8.0 91 258-352 15-118 (219)
130 PRK00178 tolB translocation pr 33.4 4.3E+02 0.0093 25.1 22.5 186 118-336 222-414 (430)
131 KOG1274 WD40 repeat protein [G 33.3 6.1E+02 0.013 26.8 17.3 139 182-331 75-221 (933)
132 PF06058 DCP1: Dcp1-like decap 33.1 67 0.0015 24.8 3.7 28 313-340 22-49 (122)
133 PF14870 PSII_BNR: Photosynthe 33.0 3.8E+02 0.0083 24.4 16.5 97 187-294 39-141 (302)
134 KOG0300 WD40 repeat-containing 32.5 1.4E+02 0.0029 27.3 5.9 61 274-336 375-436 (481)
135 PF07250 Glyoxal_oxid_N: Glyox 31.9 2E+02 0.0042 25.3 6.8 84 232-318 47-136 (243)
136 KOG0293 WD40 repeat-containing 31.8 2.6E+02 0.0057 26.5 7.7 61 264-331 323-387 (519)
137 KOG2106 Uncharacterized conser 31.3 5.1E+02 0.011 25.4 15.1 78 276-353 221-303 (626)
138 PF15408 PH_7: Pleckstrin homo 31.3 15 0.00032 26.1 -0.2 24 24-47 77-100 (104)
139 KOG2048 WD40 repeat protein [G 31.0 5.8E+02 0.013 25.9 15.5 30 104-133 210-239 (691)
140 KOG1920 IkappaB kinase complex 30.6 7.7E+02 0.017 27.2 17.3 62 232-295 267-332 (1265)
141 PF12768 Rax2: Cortical protei 30.4 4.1E+02 0.0088 23.9 12.4 110 119-247 16-129 (281)
142 KOG1332 Vesicle coat complex C 30.0 3.9E+02 0.0085 23.6 8.2 119 158-292 171-294 (299)
143 PRK04922 tolB translocation pr 29.7 5E+02 0.011 24.8 22.9 187 118-337 227-420 (433)
144 PRK13684 Ycf48-like protein; P 28.8 4.7E+02 0.01 24.1 16.0 138 186-336 67-210 (334)
145 KOG0291 WD40-repeat-containing 28.5 6.9E+02 0.015 26.0 14.2 136 215-361 361-503 (893)
146 KOG0292 Vesicle coat complex C 28.5 5.4E+02 0.012 27.3 9.8 82 266-350 263-376 (1202)
147 cd00200 WD40 WD40 domain, foun 28.2 3.6E+02 0.0078 22.6 20.1 93 232-332 116-211 (289)
148 KOG2437 Muskelin [Signal trans 26.9 1.2E+02 0.0026 29.6 4.8 126 209-335 264-419 (723)
149 KOG0289 mRNA splicing factor [ 26.9 5.8E+02 0.012 24.5 12.0 111 214-336 357-470 (506)
150 PTZ00420 coronin; Provisional 26.0 6.3E+02 0.014 25.5 10.0 55 276-333 147-202 (568)
151 PF13018 ESPR: Extended Signal 25.9 60 0.0013 17.1 1.6 15 122-136 7-21 (24)
152 KOG0319 WD40-repeat-containing 25.8 7.5E+02 0.016 25.5 15.1 191 104-331 25-225 (775)
153 COG1974 LexA SOS-response tran 25.5 4.2E+02 0.0091 22.5 8.2 64 310-375 129-199 (201)
154 PF13859 BNR_3: BNR repeat-lik 24.8 5.4E+02 0.012 23.5 12.5 79 209-291 124-211 (310)
155 KOG0301 Phospholipase A2-activ 24.1 4.3E+02 0.0094 26.9 8.1 60 263-328 229-288 (745)
156 PF14157 YmzC: YmzC-like prote 23.9 1.2E+02 0.0026 20.2 3.0 17 320-336 41-57 (63)
157 COG4946 Uncharacterized protei 23.4 7.1E+02 0.015 24.4 13.7 139 183-336 287-439 (668)
158 cd00200 WD40 WD40 domain, foun 23.1 4.5E+02 0.0097 22.0 20.9 186 107-332 60-253 (289)
159 PF01436 NHL: NHL repeat; Int 23.0 1.4E+02 0.003 16.0 3.3 20 305-324 7-27 (28)
160 KOG0321 WD40 repeat-containing 22.6 3.7E+02 0.008 27.1 7.3 99 230-331 73-178 (720)
161 PF15525 DUF4652: Domain of un 22.2 4.8E+02 0.01 22.0 7.3 18 319-336 139-156 (200)
162 PF07433 DUF1513: Protein of u 22.2 6.1E+02 0.013 23.2 21.9 206 111-335 19-254 (305)
163 PF14339 DUF4394: Domain of un 21.9 3.4E+02 0.0073 23.7 6.3 55 107-167 36-92 (236)
164 cd00260 Sialidase Sialidases o 21.4 6.3E+02 0.014 23.1 14.1 86 210-295 150-241 (351)
165 PF14583 Pectate_lyase22: Olig 20.7 4.3E+02 0.0094 25.0 7.2 118 230-352 167-297 (386)
166 KOG0650 WD40 repeat nucleolar 20.5 5.2E+02 0.011 26.0 7.8 93 230-330 545-639 (733)
167 PF10902 DUF2693: Protein of u 20.2 1.3E+02 0.0028 21.4 2.9 19 320-338 49-67 (83)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.1e-34 Score=252.41 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=163.7
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
++|||||||+... ..++||||+||+++.||+++........ ..++||||+.+++||||++.... .. .....
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~---~~~~~G~d~~~~~YKVv~~~~~~--~~---~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKES---DTYFLGYDPIEKQYKVLCFSDRS--GN---RNQSE 71 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccccc---ceEEEeecccCCcEEEEEEEeec--CC---CCCcc
Confidence 4799999998876 6789999999999999987543211111 14799999999999999985421 11 23579
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCC-CceeEEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESS-LDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~-~~~~l~~ 262 (376)
++||++++++||.++..+........+|++||++||++....+.....|++||+++|+|+ .+++|...... ....|++
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~ 151 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLIN 151 (230)
T ss_pred EEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEE
Confidence 999999999999988543322222349999999999997653221238999999999999 58998765422 3468999
Q ss_pred ecCeEEEEEecCCCCEEEEEEeCC---CceeeEEEECCC---Cce---eeeEEEeeCCcEEEEEcC--Ce-EEEEeCCCC
Q 048178 263 YDQSLSLLLLDTVDHCFKIWVMQK---KNWIKQSSVGPF---IGI---FQPLLFWKKGAFFVESNS--SQ-LLLYEPGTG 330 (376)
Q Consensus 263 ~~g~L~l~~~~~~~~~l~vW~l~~---~~W~~~~~i~~~---~~~---~~~~~~~~~g~i~~~~~~--~~-~~~yd~~t~ 330 (376)
++|+|+++........++||+|++ .+|+++++| +. ..+ ..|+++.++|+|++...+ +. +++||++++
T Consensus 152 ~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i-~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 152 YKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTV-PIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred ECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEE-cCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 999999999843345699999997 679999999 43 222 348899999999987664 44 999999986
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=3.8e-15 Score=123.06 Aligned_cols=138 Identities=25% Similarity=0.514 Sum_probs=100.1
Q ss_pred eEEECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCC-CCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCC-
Q 048178 211 RTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLE-SSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK- 286 (376)
Q Consensus 211 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~-~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~- 286 (376)
+|++||++||++..........|++||+++|+| ..+++|.... ......|++. +|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999876543223899999999999 8889998877 2244667555 67899998744466799999995
Q ss_pred ----CceeeEEEECCCCce---e-----eeEEEeeCCcEEEEEc--C-----CeEEEEeCCCCcEEEEEEec---ceEEE
Q 048178 287 ----KNWIKQSSVGPFIGI---F-----QPLLFWKKGAFFVESN--S-----SQLLLYEPGTGELRDFELEC---CWFSI 344 (376)
Q Consensus 287 ----~~W~~~~~i~~~~~~---~-----~~~~~~~~g~i~~~~~--~-----~~~~~yd~~t~~~~~v~~~~---~~~~~ 344 (376)
.+|+|.++|+ .... . ..+.+.+++++++..+ . ..++.|+ +.+..+++.+.. .++.+
T Consensus 81 ~~~~~SWtK~~~i~-~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~ 158 (164)
T PF07734_consen 81 GYGKESWTKLFTID-LPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSI 158 (164)
T ss_pred ccCcceEEEEEEEe-cCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCE
Confidence 6899999995 4322 1 2233344456665532 1 3577888 778888888743 28889
Q ss_pred EEeecC
Q 048178 345 YIYTES 350 (376)
Q Consensus 345 ~~y~~s 350 (376)
+.|+||
T Consensus 159 ~~YvpS 164 (164)
T PF07734_consen 159 CNYVPS 164 (164)
T ss_pred EEECCC
Confidence 999987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.58 E-value=6.2e-14 Score=111.02 Aligned_cols=105 Identities=30% Similarity=0.456 Sum_probs=80.5
Q ss_pred eEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCC-CCCCCceeEEEecCeEEEEEecCC--CCEEEEEEeCC-
Q 048178 211 RTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCT-LESSLDVTLGIYDQSLSLLLLDTV--DHCFKIWVMQK- 286 (376)
Q Consensus 211 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~-~~~~~~~~l~~~~g~L~l~~~~~~--~~~l~vW~l~~- 286 (376)
++++||.+||++.... .....|++||+++|+|+.|++|.. ........|.+++|+|+++..... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~~-~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWSED-SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEECC-CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 5899999999998721 236799999999999999999922 122245789999999999998422 25799999998
Q ss_pred --CceeeEEEECCCC-------ceeeeEEEeeCCcEEEE
Q 048178 287 --KNWIKQSSVGPFI-------GIFQPLLFWKKGAFFVE 316 (376)
Q Consensus 287 --~~W~~~~~i~~~~-------~~~~~~~~~~~g~i~~~ 316 (376)
++|++...+-|.. ....+.++.++|+|++.
T Consensus 80 ~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 EKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7899987653432 12567787888888876
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.53 E-value=3.3e-12 Score=116.32 Aligned_cols=304 Identities=13% Similarity=0.129 Sum_probs=153.6
Q ss_pred CCCCCCCCHHHHHHHHhcCC-ccccceeeecchhhhhhcCChHHHHHHhhcCCCCcEEEEeeeccCccCCCCCceeEEec
Q 048178 3 LLGNDDSPEDIMIEILSRLP-VKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNTEEHSHPKEYFCLF 81 (376)
Q Consensus 3 ~~~~~~LP~Dll~eIl~rLp-~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (376)
++.++.||+|||..|..||| ..++.|+|+|||+||+.+.... + ....+++|+++...... ... +.
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~~~~~~~~~----~~~------~~ 66 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPLILFNPINP----SET------LT 66 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccccccCcccC----CCC------cc
Confidence 46789999999999999998 7899999999999999876411 0 00011123333211000 000 00
Q ss_pred CCCCccccc-cccCCCCCCccc-eeeeeecceEEEeec---CCeEEEEecCccceeecCCCCCCCCC-ccccccceEEE-
Q 048178 82 PDETLEDLS-LQDLSTQEPVLG-SFKGLYCGIVFIEGL---NNRITLWNIATRESVTLPKYRAIIPQ-YTRVFGTKIGF- 154 (376)
Q Consensus 82 ~~~~~~~~~-~~~l~p~~~~~~-~~~~s~~Gll~~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~~~~- 154 (376)
+ ++..... -..+.+...... ...++..|+|.-.++ ...+.+.||+++....+|+-...... ........+.+
T Consensus 67 ~-~~~~~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 67 D-DRSYISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred c-cccccccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 0 0000000 000000000000 011356899987654 36789999999998877742211100 00000001111
Q ss_pred eeeCCC---CCeEEEEEEEEEecCCCCCCCcceEEEEEc------CCCceEeccccCccccCCCCeEEECceEEEEeeec
Q 048178 155 GLDPKT---KDYKVVLILTLWDEKRDSSCPFSLVTVYNL------STNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLE 225 (376)
Q Consensus 155 g~d~~~---~~ykvv~~~~~~~~~~~~~~~~~~~~vyss------~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~ 225 (376)
+.+... ..|+-+.+-......+ .......|+.- +.++|..++.... .-...++++|.+|-+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~---~~~DIi~~kGkfYAvD~~G 219 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGDN---HRDGVLGIGRDGKINYWDGNVLKALKQMGY---HFSDIIVHKGQTYALDSIG 219 (373)
T ss_pred ecccccccccceeEEEEEEeecCCC---cceEEEEEeecCcEeeecCCeeeEccCCCc---eeeEEEEECCEEEEEcCCC
Confidence 111100 0132111111100000 00112222211 2467887763211 1235899999999985543
Q ss_pred CCCCccEEEEEECCCceEeeecCCC--CC--CC-CCceeEEEecCeEEEEEec--C-------------CCCEEEEEEeC
Q 048178 226 NDNDNYVILSFHMAEEKFQEIQGPC--TL--ES-SLDVTLGIYDQSLSLLLLD--T-------------VDHCFKIWVMQ 285 (376)
Q Consensus 226 ~~~~~~~i~~fD~~~e~~~~i~lP~--~~--~~-~~~~~l~~~~g~L~l~~~~--~-------------~~~~l~vW~l~ 285 (376)
.+.++|.+-+ ...+..+. .. +. .....|++..|.|+++... . ....++||.++
T Consensus 220 ------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD 292 (373)
T PLN03215 220 ------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD 292 (373)
T ss_pred ------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc
Confidence 5666663321 12221111 01 11 1236799999999999882 1 12468999998
Q ss_pred C--CceeeEEEECCCCce----eeeEEEe-------eCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 048178 286 K--KNWIKQSSVGPFIGI----FQPLLFW-------KKGAFFVESNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 286 ~--~~W~~~~~i~~~~~~----~~~~~~~-------~~g~i~~~~~~~~~~~yd~~t~~~~~v~ 336 (376)
. .+|+++.+++ -..+ ...+++. +.+.||+.... ...+||++.++...+.
T Consensus 293 ~~~~~WveV~sLg-d~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~-~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 293 DELAKWMEVKTLG-DNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT-MPKVFKLDNGNGSSIE 354 (373)
T ss_pred CCCCcEEEecccC-CeEEEEECCccEEEecCCCCCccCCEEEEECCC-cceEEECCCCCccceE
Confidence 7 8899999885 2222 1111211 23448887544 4789999999977653
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.42 E-value=3.1e-11 Score=118.71 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=143.6
Q ss_pred eeeecceEEEeec-------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCC
Q 048178 105 KGLYCGIVFIEGL-------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD 177 (376)
Q Consensus 105 ~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 177 (376)
++..+|.|.+..+ ...+..+||.+++|..+|+++..+.. . .....+ + ||..++.. +..
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~------~~~~~~---g--~IYviGG~--~~~- 363 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-F------SLAVID---D--TIYAIGGQ--NGT- 363 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-e------eEEEEC---C--EEEEECCc--CCC-
Confidence 3455666655533 14578999999999999998754321 1 111122 1 44444321 110
Q ss_pred CCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC------------------CccEEEEEECC
Q 048178 178 SSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN------------------DNYVILSFHMA 239 (376)
Q Consensus 178 ~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~------------------~~~~i~~fD~~ 239 (376)
.....++.|++.+++|+.++.+|.... ...++.++|.+|.+++..... ....+.+||++
T Consensus 364 --~~~~sve~Ydp~~~~W~~~~~mp~~r~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 364 --NVERTIECYTMGDDKWKMLPDMPIALS-SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred --CCCceEEEEECCCCeEEECCCCCcccc-cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 224579999999999999987765433 234778999999998653210 12468999999
Q ss_pred CceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC----CCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcE
Q 048178 240 EEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV----DHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 240 ~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~----~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (376)
+++|+.+ ++|..... ..+++++|+|+++++..+ ...++.+..+. ++|+.+..+ |.+....-+++. +|.|
T Consensus 441 td~W~~v~~m~~~r~~---~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~-~~~i 515 (557)
T PHA02713 441 NNIWETLPNFWTGTIR---PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH-DNTI 515 (557)
T ss_pred CCeEeecCCCCccccc---CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE-CCEE
Confidence 9999988 55555433 578899999999987321 13467777776 689999888 665433333333 7889
Q ss_pred EEEEc-CC--eEEEEeCCCCcEEEEEEecc
Q 048178 314 FVESN-SS--QLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 314 ~~~~~-~~--~~~~yd~~t~~~~~v~~~~~ 340 (376)
++.++ ++ .+-.||++|++|+.+.-++.
T Consensus 516 yv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 516 MMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred EEEeeecceeehhhcCcccccccchhhhcC
Confidence 88754 22 48899999999999976654
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.33 E-value=2e-10 Score=113.03 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=130.6
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.+..+||.+++|..+++++..... . .....+ + +|..++.. ... ......++.|++.++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~------~~a~l~----~-~IYviGG~--~~~--~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-Y------ASAIVD----N-EIIIAGGY--NFN--NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-e------EEEEEC----C-EEEEEcCC--CCC--CCccceEEEEECCCCeEeeCC
Confidence 457899999999999988754321 1 111111 1 44444321 100 012457899999999999998
Q ss_pred ccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC---
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV--- 275 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~--- 275 (376)
.++.... ....+.++|++|.+++.........+.+||+.+++|..+ ++|..... ...++++|+|+++++...
T Consensus 337 ~m~~~R~-~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~---~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 337 PMIKNRC-RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS---YGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred CCcchhh-ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc---ccEEEECCEEEEEeCCCcccc
Confidence 7754332 335789999999998864322234699999999999988 66665543 467789999999987321
Q ss_pred ------------------CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC-------CeEEEEeCCC-
Q 048178 276 ------------------DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS-------SQLLLYEPGT- 329 (376)
Q Consensus 276 ------------------~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~-------~~~~~yd~~t- 329 (376)
...++.+..+.++|..+..+ +.......++ .-+|.||+.++. ..+..||+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCC-CcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCC
Confidence 23466666666899988777 4443222233 347889887541 2367999999
Q ss_pred CcEEEEE
Q 048178 330 GELRDFE 336 (376)
Q Consensus 330 ~~~~~v~ 336 (376)
++|+.+.
T Consensus 491 ~~W~~~~ 497 (557)
T PHA02713 491 NGWELIT 497 (557)
T ss_pred CCeeEcc
Confidence 8999884
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.31 E-value=1.9e-10 Score=112.82 Aligned_cols=210 Identities=10% Similarity=0.127 Sum_probs=146.4
Q ss_pred eeeeecceEEEeec-------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCC
Q 048178 104 FKGLYCGIVFIEGL-------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKR 176 (376)
Q Consensus 104 ~~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 176 (376)
-++..+|.|....+ .+.+..+||.+++|..+|++...+... +.+. =..+|.+++.. ..
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------~v~~----l~g~iYavGG~-dg-- 391 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------GVAV----LDGKLYAVGGF-DG-- 391 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------eeEE----ECCEEEEEecc-cc--
Confidence 35566777766533 246799999999999999987664221 1110 11234444321 11
Q ss_pred CCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeee-cCCCCCCC
Q 048178 177 DSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI-QGPCTLES 254 (376)
Q Consensus 177 ~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i-~lP~~~~~ 254 (376)
...-..+|.|+.+++.|..++.++. ......++.++|.+|-+++..... .-..+.+||+.+++|+.+ +++.....
T Consensus 392 --~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~ 468 (571)
T KOG4441|consen 392 --EKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG 468 (571)
T ss_pred --ccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc
Confidence 1335689999999999999997765 223345789999999998866543 357899999999999988 66666544
Q ss_pred CCceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEE-eeCCcEEEEEc------CCeEEE
Q 048178 255 SLDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLF-WKKGAFFVESN------SSQLLL 324 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~-~~~g~i~~~~~------~~~~~~ 324 (376)
..+++++|+|++++..++ ...++.+..+...|..+..+ +... ...++ .-++.+|+..+ -..+-.
T Consensus 469 ---~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-~~~r--s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ 542 (571)
T KOG4441|consen 469 ---FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-TSPR--SAVGVVVLGGKLYAVGGFDGNNNLNTVEC 542 (571)
T ss_pred ---ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC-cccc--ccccEEEECCEEEEEecccCccccceeEE
Confidence 568999999999999433 34577777777999999666 3331 22222 33677887743 245999
Q ss_pred EeCCCCcEEEEEE
Q 048178 325 YEPGTGELRDFEL 337 (376)
Q Consensus 325 yd~~t~~~~~v~~ 337 (376)
||+++++|+.+.-
T Consensus 543 ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 543 YDPETDTWTEVTE 555 (571)
T ss_pred cCCCCCceeeCCC
Confidence 9999999998743
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.29 E-value=9.3e-10 Score=106.65 Aligned_cols=195 Identities=10% Similarity=0.082 Sum_probs=131.1
Q ss_pred ecceEEEeec------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCC
Q 048178 108 YCGIVFIEGL------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCP 181 (376)
Q Consensus 108 ~~Gll~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 181 (376)
.++.+.+..+ ...+..+||.+++|..+|+++..+.. . .+...| + +|..++.. + .
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~------~~v~~~---~--~iYviGG~--~------~ 329 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-A------SGVPAN---N--KLYVVGGL--P------N 329 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-c------eEEEEC---C--EEEEECCc--C------C
Confidence 4555544433 23567899999999999998754321 1 111111 1 34444221 1 1
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeE
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTL 260 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l 260 (376)
...++.|+..+++|..++.++.... ...++.++|.+|.+++.... ...+..||+++++|+.+ ++|..... ...
T Consensus 330 ~~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~---~~~ 403 (480)
T PHA02790 330 PTSVERWFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYK---SCA 403 (480)
T ss_pred CCceEEEECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCcccc---ceE
Confidence 2458999999999999987754332 33578999999999875432 34688999999999988 44444332 467
Q ss_pred EEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC------CeEEEEeCCCCcEEE
Q 048178 261 GIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS------SQLLLYEPGTGELRD 334 (376)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~------~~~~~yd~~t~~~~~ 334 (376)
++++|+|++++. ..+++..+.++|+.+..+ +.+.....++ .-+|+||+.++. ..+..||+++++|+.
T Consensus 404 ~~~~~~IYv~GG-----~~e~ydp~~~~W~~~~~m-~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 404 LVFGRRLFLVGR-----NAEFYCESSNTWTLIDDP-IYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEECCEEEEECC-----ceEEecCCCCcEeEcCCC-CCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 789999999885 256777777999998777 5543333333 337889987541 358899999999975
Q ss_pred E
Q 048178 335 F 335 (376)
Q Consensus 335 v 335 (376)
-
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 3
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.26 E-value=3.8e-10 Score=110.80 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=140.0
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+..+||.+++|..+.+++..+.... .+.++ + +|..++. +... ......++.|++.+++|..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~-----~~~~~-----~--~lYv~GG-~~~~---~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVG-----VAVLN-----G--KLYVVGG-YDSG---SDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccccccc-----EEEEC-----C--EEEEEcc-ccCC---CcccceEEEecCCCCceecc
Confidence 456789999999999998886543211 11111 1 4444432 1110 13457999999999999998
Q ss_pred cccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-CCC
Q 048178 199 KSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-TVD 276 (376)
Q Consensus 199 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~~~ 276 (376)
+.+.... .....+.++|.+|-+++.........+..||+.+++|..+ +++..... ...++++|+||++++. ...
T Consensus 365 a~M~~~R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~---~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 365 APMNTKR-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSG---HGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred CCccCcc-ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceee---eEEEEECCEEEEEcCcCCCc
Confidence 8774433 2335789999999999877544466799999999999998 56664433 6788999999999993 222
Q ss_pred ---CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC------CeEEEEeCCCCcEEEEE
Q 048178 277 ---HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 277 ---~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~------~~~~~yd~~t~~~~~v~ 336 (376)
..++.+....+.|..+..| +.......+++. +|.||..++. ..+-.||+++++|..+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M-~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPM-NTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred cccceEEEEcCCCCceeecCCc-ccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 5778888888999999888 555333334434 7889988542 34889999999999995
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.23 E-value=1.9e-09 Score=106.44 Aligned_cols=195 Identities=11% Similarity=0.107 Sum_probs=127.1
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++.+||.|++|..+|+++..+... .....+ + +|..++.. ... .....+++|+..+++|+.++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~-------~~~~~~---~--~lyv~GG~-~~~----~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNP-------GVTVFN---N--RIYVIGGI-YNS----ISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccc-------eEEEEC---C--EEEEEeCC-CCC----EecceEEEEcCCCCceeeCC
Confidence 5789999999999999877543211 111111 1 34444321 111 22457899999999999988
Q ss_pred ccCccccCCCCeEEECceEEEEeeecCC-CCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC--
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLEND-NDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV-- 275 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~-- 275 (376)
.+|... ....++.++|.+|-+++.... .....+..||+.+++|..+ ++|..... ...+..+|+|+++++...
T Consensus 375 ~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 375 PLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG---GCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred CcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC---ceEEEECCEEEEECCccCCC
Confidence 665432 233467889999998874321 1235789999999999988 55654433 456778999999987311
Q ss_pred ----CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEE
Q 048178 276 ----DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 276 ----~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~ 337 (376)
...+.++..+..+|..+..+ +.+......+ .-++.|++.++ ...+..||+++++|+.+.-
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSL-NFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCC-CcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 12344444445899998766 4443222223 23788887753 2469999999999998853
No 11
>PLN02153 epithiospecifier protein
Probab=99.13 E-value=3.2e-08 Score=92.00 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=122.5
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
+.++++||.+++|..+|+.......... ......++ + +|+.++.. ... .....+++|++++++|+.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~---~~~~~~~~---~--~iyv~GG~-~~~----~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCL---GVRMVAVG---T--KLYIFGGR-DEK----REFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccC---ceEEEEEC---C--EEEEECCC-CCC----CccCcEEEEECCCCEEEEe
Confidence 3689999999999998875422111000 00111111 1 44444321 111 1235789999999999988
Q ss_pred cccCc---ccc-CCCCeEEECceEEEEeeecCCC------CccEEEEEECCCceEeeecCCCCC-CCCCceeEEEecCeE
Q 048178 199 KSIDY---TMR-LSSERTYFDGAFYWLLKLENDN------DNYVILSFHMAEEKFQEIQGPCTL-ESSLDVTLGIYDQSL 267 (376)
Q Consensus 199 ~~~~~---~~~-~~~~~v~~~G~lywl~~~~~~~------~~~~i~~fD~~~e~~~~i~lP~~~-~~~~~~~l~~~~g~L 267 (376)
+.+.. ..+ ....++..+|++|.+++..... ....+.+||+++.+|..++.+... .......+++++|++
T Consensus 117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i 196 (341)
T PLN02153 117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196 (341)
T ss_pred ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence 75421 111 2334678899999988754211 113588999999999987533211 111224577889999
Q ss_pred EEEEecC-----------CCCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEcC---------------
Q 048178 268 SLLLLDT-----------VDHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESNS--------------- 319 (376)
Q Consensus 268 ~l~~~~~-----------~~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~--------------- 319 (376)
+++.... ....++++.++..+|+++...+ |......... .-++.||+....
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCcccccccccccc
Confidence 9987521 0234566666668999987543 3322222222 335677776431
Q ss_pred CeEEEEeCCCCcEEEEEE
Q 048178 320 SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 320 ~~~~~yd~~t~~~~~v~~ 337 (376)
..++.||+++++|+++.-
T Consensus 276 n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 276 NEGYALDTETLVWEKLGE 293 (341)
T ss_pred ccEEEEEcCccEEEeccC
Confidence 258999999999999853
No 12
>PLN02193 nitrile-specifier protein
Probab=99.04 E-value=8.5e-08 Score=92.80 Aligned_cols=204 Identities=9% Similarity=0.061 Sum_probs=123.2
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++++||.+++|..+|+....+..... ......++ . ++..+.. +... .....+++|++.+++|+.+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~---~~~~v~~~----~-~lYvfGG-~~~~----~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCL---GVRMVSIG----S-TLYVFGG-RDAS----RQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCccc---ceEEEEEC----C-EEEEECC-CCCC----CCCccEEEEECCCCEEEEcC
Confidence 588999999999988764221110000 01111121 1 3333321 1111 22457899999999999987
Q ss_pred ccCcc-cc-CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCC-CCceeEEEecCeEEEEEecCC-
Q 048178 200 SIDYT-MR-LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLES-SLDVTLGIYDQSLSLLLLDTV- 275 (376)
Q Consensus 200 ~~~~~-~~-~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~-~~~~~l~~~~g~L~l~~~~~~- 275 (376)
.+... .+ ....++..++.+|.++..........+.+||+.+.+|..++.|..... .....+++++|+++++.....
T Consensus 261 ~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred cCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC
Confidence 54211 11 223467789999998875432224468899999999998865432211 123466778999999887321
Q ss_pred -CCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEcC---------------CeEEEEeCCCCcEEEEEE
Q 048178 276 -DHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESNS---------------SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 276 -~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~---------------~~~~~yd~~t~~~~~v~~ 337 (376)
...+.++.++..+|.++..++ |.+......+ .-++.|++.... ..++.||+.|++|+++..
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 244555555558999987653 3322222223 336777776431 238999999999999864
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.97 E-value=1.7e-07 Score=87.31 Aligned_cols=214 Identities=13% Similarity=0.163 Sum_probs=125.6
Q ss_pred eecceEEEeec--CCeEEEEec--CccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCC--CCC
Q 048178 107 LYCGIVFIEGL--NNRITLWNI--ATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD--SSC 180 (376)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~--~~~ 180 (376)
..++-|.+..+ ...+++.++ .+++|..+|+++....... .....+ + +|..++.. ..... ...
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~------~~~~~~---~--~iYv~GG~-~~~~~~~~~~ 82 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA------VAAAID---G--KLYVFGGI-GKANSEGSPQ 82 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc------eEEEEC---C--EEEEEeCC-CCCCCCCcce
Confidence 44566655433 345677774 6788999998763221111 111111 1 44444321 11000 001
Q ss_pred CcceEEEEEcCCCceEeccccCccccC-CCCeE-EECceEEEEeeecCCC------------------------------
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYTMRL-SSERT-YFDGAFYWLLKLENDN------------------------------ 228 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~-~~~~v-~~~G~lywl~~~~~~~------------------------------ 228 (376)
....++.|+..+++|+.++.+ ..... ...++ .++|++|.+++.....
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~~-~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDTR-SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP 161 (346)
T ss_pred ecccEEEEECCCCEEecCCCC-CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCCh
Confidence 135799999999999998732 11111 12233 6899999988653110
Q ss_pred ----CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecC--CCCEEEEE--EeCC--CceeeEEEECC
Q 048178 229 ----DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDT--VDHCFKIW--VMQK--KNWIKQSSVGP 297 (376)
Q Consensus 229 ----~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~--~~~~l~vW--~l~~--~~W~~~~~i~~ 297 (376)
....+.+||+++++|+.+ ++|.... ....+++++|+|++++... .....++| .++. .+|..+..+ |
T Consensus 162 ~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m-~ 238 (346)
T TIGR03547 162 EDYFWNKNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL-P 238 (346)
T ss_pred hHcCccceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC-C
Confidence 014699999999999998 5664211 1256778899999999832 12233454 4433 689998877 5
Q ss_pred CCce------eeeEEEeeCCcEEEEEcC-----------------------CeEEEEeCCCCcEEEEE
Q 048178 298 FIGI------FQPLLFWKKGAFFVESNS-----------------------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 298 ~~~~------~~~~~~~~~g~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~ 336 (376)
.+.. ....++.-+|+|++.... ..+-.||+++++|+++.
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 4321 111123347888877431 13679999999999885
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.93 E-value=4.7e-07 Score=83.53 Aligned_cols=151 Identities=14% Similarity=0.138 Sum_probs=98.8
Q ss_pred cceEEEEEcCCCce----EeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCC
Q 048178 182 FSLVTVYNLSTNSW----RNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSL 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W----~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~ 256 (376)
...++.|+..++.| +.++.+|.... ...++.++|.+|.+++.........+.+||+++++|+.+ ++|.... .
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~ 163 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFE-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR--V 163 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCcc-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--C
Confidence 45788899999988 56655543322 235778899999998753322245799999999999988 4664321 1
Q ss_pred ceeEEEecCeEEEEEecCCC--CEEEEEEeCCCceeeEEEECCCCce-----eeeEEEeeCCcEEEEEcC----------
Q 048178 257 DVTLGIYDQSLSLLLLDTVD--HCFKIWVMQKKNWIKQSSVGPFIGI-----FQPLLFWKKGAFFVESNS---------- 319 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~~--~~l~vW~l~~~~W~~~~~i~~~~~~-----~~~~~~~~~g~i~~~~~~---------- 319 (376)
...+++.+++|++++..... ..+.++..+..+|.++..+ +.... .....+..++.|++....
T Consensus 164 ~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 242 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP-TTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVI 242 (323)
T ss_pred cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCC-CCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHh
Confidence 24567889999999984222 2344555555889987654 21111 111122335677776331
Q ss_pred ----------------------------CeEEEEeCCCCcEEEEE
Q 048178 320 ----------------------------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 320 ----------------------------~~~~~yd~~t~~~~~v~ 336 (376)
..+..||+++++|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 243 DLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 35999999999999986
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=98.93 E-value=3.7e-08 Score=95.57 Aligned_cols=164 Identities=9% Similarity=0.065 Sum_probs=116.1
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeE
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTL 260 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l 260 (376)
...++.|++.+++|..++.++.... ....+.++|.+|.+++... ...+..||+.+++|..+ ++|..... ...
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~-~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~---~~~ 358 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRL-YASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCN---PAV 358 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhh-cceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcc---cEE
Confidence 4578899999999999987754332 2346789999999987642 34689999999999988 66654433 577
Q ss_pred EEecCeEEEEEec-CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEEEe-
Q 048178 261 GIYDQSLSLLLLD-TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELE- 338 (376)
Q Consensus 261 ~~~~g~L~l~~~~-~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~~~- 338 (376)
++++|+|+++++. .....++.|..+.++|..+..+ +.+... ..++.-+|.||+.++ ....||+++++|+.+.--
T Consensus 359 ~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-~~~r~~-~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 359 ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-YYPHYK-SCALVFGRRLFLVGR--NAEFYCESSNTWTLIDDPI 434 (480)
T ss_pred EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-CCcccc-ceEEEECCEEEEECC--ceEEecCCCCcEeEcCCCC
Confidence 8999999999983 2235688888877999998766 444322 233344788998864 367899999999988532
Q ss_pred cc--eEEEEEeecCccccCC
Q 048178 339 CC--WFSIYIYTESLITLKG 356 (376)
Q Consensus 339 ~~--~~~~~~y~~sLv~~~~ 356 (376)
.. ...+......+.-+++
T Consensus 435 ~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 435 YPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred CCccccEEEEECCEEEEECC
Confidence 11 4445555554444443
No 16
>PHA03098 kelch-like protein; Provisional
Probab=98.92 E-value=6.8e-08 Score=95.45 Aligned_cols=214 Identities=14% Similarity=0.151 Sum_probs=133.1
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.+.-+|+.+++|..++..+... .+ .....+ -+|+.++.. ... ......+..|+..+++|..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~-----~~lyv~GG~-~~~---~~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY--CF------GSVVLN-----NVIYFIGGM-NKN---NLSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCccccc--cc------eEEEEC-----CEEEEECCC-cCC---CCeeccEEEEeCCCCeeeECC
Confidence 3455788899998887554221 00 111111 134333211 111 012347889999999999988
Q ss_pred ccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-CC--
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-TV-- 275 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~~-- 275 (376)
.++... .....+.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...+.++|+++++++. ..
T Consensus 328 ~~~~~R-~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~---~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 328 ELIYPR-KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN---PCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred CCCccc-ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc---ceEEEECCEEEEECCcCCCCc
Confidence 765332 2335788999999998765322245688999999999988 56655433 4667889999999882 11
Q ss_pred -CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC---------CeEEEEeCCCCcEEEEEEecc---eE
Q 048178 276 -DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS---------SQLLLYEPGTGELRDFELECC---WF 342 (376)
Q Consensus 276 -~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~~yd~~t~~~~~v~~~~~---~~ 342 (376)
...+++|..+..+|..+..+ |...... .++..++.|++.++. ..+..||+++++|+++.-... ..
T Consensus 404 ~~~~v~~yd~~t~~W~~~~~~-p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 481 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGSPL-PISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA 481 (534)
T ss_pred ccceEEEEeCCCCeeeecCCC-CccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc
Confidence 24566676666899998766 5543222 233447788877431 238999999999999853211 33
Q ss_pred EEEEeecCccccCC
Q 048178 343 SIYIYTESLITLKG 356 (376)
Q Consensus 343 ~~~~y~~sLv~~~~ 356 (376)
....+...+.-+++
T Consensus 482 ~~~~~~~~iyv~GG 495 (534)
T PHA03098 482 SLCIFNNKIYVVGG 495 (534)
T ss_pred eEEEECCEEEEEcC
Confidence 44555444444443
No 17
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.90 E-value=5.5e-10 Score=71.33 Aligned_cols=43 Identities=28% Similarity=0.618 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHH
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISM 48 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~ 48 (376)
+..||+|++.+||+.||++++.++++|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 4689999999999999999999999999999999988755443
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.89 E-value=1e-06 Score=82.94 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=98.8
Q ss_pred ceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC---CccEEEEEECCCceEeee-cCCCCCCCC---
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN---DNYVILSFHMAEEKFQEI-QGPCTLESS--- 255 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~~i~~fD~~~e~~~~i-~lP~~~~~~--- 255 (376)
..+++|+..++.|+.++.+|.........+.+++.||.+++..... .......||+++.+|..+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 5799999999999998866532222334677899999998753211 233456678899999987 566543221
Q ss_pred --CceeEEEecCeEEEEEecCCC--------------------CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcE
Q 048178 256 --LDVTLGIYDQSLSLLLLDTVD--------------------HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 256 --~~~~l~~~~g~L~l~~~~~~~--------------------~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (376)
.....++++|+|++++..... ..+++|..+...|..+..+ |.+.... .++.-+++|
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~r~~~-~av~~~~~i 346 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-PQGLAYG-VSVSWNNGV 346 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-CCCccce-EEEEeCCEE
Confidence 112246789999999873110 1357788888899988777 6543233 344447888
Q ss_pred EEEEcC-------CeEEEEeCCCCcEEE
Q 048178 314 FVESNS-------SQLLLYEPGTGELRD 334 (376)
Q Consensus 314 ~~~~~~-------~~~~~yd~~t~~~~~ 334 (376)
|+.... ..+..|+++++++..
T Consensus 347 yv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 347 LLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 887542 257888888776653
No 19
>PLN02193 nitrile-specifier protein
Probab=98.89 E-value=7.1e-07 Score=86.42 Aligned_cols=170 Identities=13% Similarity=0.156 Sum_probs=106.2
Q ss_pred ceEEEEEcCCCceEecccc---CccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cC---CCCCCCC
Q 048178 183 SLVTVYNLSTNSWRNLKSI---DYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QG---PCTLESS 255 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~---~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~l---P~~~~~~ 255 (376)
..+++|+.++++|..++.. |.........+.+++.+|.++..........+.+||+.+.+|+.+ ++ |....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~-- 270 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS-- 270 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc--
Confidence 4699999999999986532 111111234678899999988754322234688999999999988 44 33322
Q ss_pred CceeEEEecCeEEEEEecC---CCCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc-----CCeEEEE
Q 048178 256 LDVTLGIYDQSLSLLLLDT---VDHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN-----SSQLLLY 325 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~---~~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~y 325 (376)
...++..+++|++++... ....+.++.++..+|..+...+ +.......+++ -+++|++... ...+..|
T Consensus 271 -~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 271 -FHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred -ceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEE
Confidence 245677899999998832 1234566666668998765421 11111222232 3677877643 2459999
Q ss_pred eCCCCcEEEEEEecc------eEEEEEeecCccccCC
Q 048178 326 EPGTGELRDFELECC------WFSIYIYTESLITLKG 356 (376)
Q Consensus 326 d~~t~~~~~v~~~~~------~~~~~~y~~sLv~~~~ 356 (376)
|+++++|+++...+. ...+..+...|.-+++
T Consensus 349 D~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 349 DPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred ECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 999999999864321 3444555555544443
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.89 E-value=6e-07 Score=84.54 Aligned_cols=237 Identities=12% Similarity=0.127 Sum_probs=132.2
Q ss_pred eeeecceEEEeec--CCeEEEEecC--ccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCC-C
Q 048178 105 KGLYCGIVFIEGL--NNRITLWNIA--TRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS-S 179 (376)
Q Consensus 105 ~~s~~Gll~~~~~--~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~-~ 179 (376)
.+..++-|.+..+ ...++++++. +++|..+|+++....... .....+ + +|..++......... .
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~------~~v~~~---~--~IYV~GG~~~~~~~~~~ 102 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQA------VAAFID---G--KLYVFGGIGKTNSEGSP 102 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccc------eEEEEC---C--EEEEEcCCCCCCCCCce
Confidence 3445666655433 3456777765 578999997653221111 111111 1 333332110000000 0
Q ss_pred CCcceEEEEEcCCCceEeccccCcccc-CCCCeEE-ECceEEEEeeecCCC-----------------------------
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSIDYTMR-LSSERTY-FDGAFYWLLKLENDN----------------------------- 228 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~-~~G~lywl~~~~~~~----------------------------- 228 (376)
.....++.|+..+++|+.++... ... ....++. .+|.||.+++.....
T Consensus 103 ~~~~~v~~YD~~~n~W~~~~~~~-p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 103 QVFDDVYKYDPKTNSWQKLDTRS-PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred eEcccEEEEeCCCCEEEeCCCCC-CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 11357999999999999987421 111 1122344 799999998753100
Q ss_pred -----CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec--CCCCEEEEEE--eC--CCceeeEEEEC
Q 048178 229 -----DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD--TVDHCFKIWV--MQ--KKNWIKQSSVG 296 (376)
Q Consensus 229 -----~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~--~~~~~l~vW~--l~--~~~W~~~~~i~ 296 (376)
....+..||+.+++|..+ ++|.... ....++..+++|++++.. ......++|. ++ ..+|.++..+
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 258 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL- 258 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC-
Confidence 024699999999999988 5664221 124667789999999983 2234455664 32 2789998877
Q ss_pred CCCce-------eeeEEEeeCCcEEEEEcCC-----------------------eEEEEeCCCCcEEEEEEecc---eEE
Q 048178 297 PFIGI-------FQPLLFWKKGAFFVESNSS-----------------------QLLLYEPGTGELRDFELECC---WFS 343 (376)
Q Consensus 297 ~~~~~-------~~~~~~~~~g~i~~~~~~~-----------------------~~~~yd~~t~~~~~v~~~~~---~~~ 343 (376)
|.... ....++.-+++|++..... .+-.||+++++|+++.-... ...
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~ 338 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGV 338 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceE
Confidence 54311 1111233477888774311 23479999999998853222 333
Q ss_pred EEEeecCccccCC
Q 048178 344 IYIYTESLITLKG 356 (376)
Q Consensus 344 ~~~y~~sLv~~~~ 356 (376)
+......+.-+++
T Consensus 339 av~~~~~iyv~GG 351 (376)
T PRK14131 339 SVSWNNGVLLIGG 351 (376)
T ss_pred EEEeCCEEEEEcC
Confidence 4444444443333
No 21
>PLN02153 epithiospecifier protein
Probab=98.87 E-value=7.4e-07 Score=82.84 Aligned_cols=151 Identities=10% Similarity=0.156 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCceEeccccCc-ccc--CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeec-C-----CCCCC
Q 048178 183 SLVTVYNLSTNSWRNLKSIDY-TMR--LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-G-----PCTLE 253 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~-~~~--~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-l-----P~~~~ 253 (376)
..+++|+..+++|+.++.+.. ... .....+.+++.||.+++.........+.+||+++.+|+.++ + |....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 479999999999998764421 111 12346788999999987543222346899999999999873 3 32222
Q ss_pred CCCceeEEEecCeEEEEEecCCC---------CEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc----
Q 048178 254 SSLDVTLGIYDQSLSLLLLDTVD---------HCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN---- 318 (376)
Q Consensus 254 ~~~~~~l~~~~g~L~l~~~~~~~---------~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~---- 318 (376)
....++.+++|++++..... ..++++..+..+|..+..+. +.......+++ -+++|++...
T Consensus 130 ---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 130 ---FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred ---eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 24567889999999883211 24556666668899875542 11111122232 3677776521
Q ss_pred ----------CCeEEEEeCCCCcEEEEEE
Q 048178 319 ----------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 319 ----------~~~~~~yd~~t~~~~~v~~ 337 (376)
...+..||+++++|+++..
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccc
Confidence 1358999999999999864
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.76 E-value=3.4e-06 Score=78.61 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC-CccEEEEE--ECCCceEeee-cCCCCCCC-C--
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSF--HMAEEKFQEI-QGPCTLES-S-- 255 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~f--D~~~e~~~~i-~lP~~~~~-~-- 255 (376)
..+++|++.+++|+.++.+|.........+.++|+||.+++..... ....+..| |.++.+|..+ ++|..... .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 5799999999999999877532222334678899999998754211 11234444 5567799887 56643211 0
Q ss_pred -CceeEEEecCeEEEEEecCC--------------------CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE
Q 048178 256 -LDVTLGIYDQSLSLLLLDTV--------------------DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF 314 (376)
Q Consensus 256 -~~~~l~~~~g~L~l~~~~~~--------------------~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~ 314 (376)
.....++++|+|++++.... ...+++|..+..+|..+..+ |...... .++.-++.|+
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~~~~~-~~~~~~~~iy 325 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL-PQGLAYG-VSVSWNNGVL 325 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC-CCCceee-EEEEcCCEEE
Confidence 12336778999999987310 02578999988999999887 6653322 2334478888
Q ss_pred EEEc
Q 048178 315 VESN 318 (376)
Q Consensus 315 ~~~~ 318 (376)
+...
T Consensus 326 v~GG 329 (346)
T TIGR03547 326 LIGG 329 (346)
T ss_pred EEec
Confidence 8754
No 23
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.72 E-value=6.6e-09 Score=66.71 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHh
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL 50 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~ 50 (376)
...||+|++.+||.+|+++++.+++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 357999999999999999999999999999999999999876653
No 24
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.70 E-value=4.2e-09 Score=65.17 Aligned_cols=39 Identities=46% Similarity=0.810 Sum_probs=36.9
Q ss_pred CCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHH
Q 048178 9 SPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFIS 47 (376)
Q Consensus 9 LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 47 (376)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.70 E-value=3.7e-06 Score=77.55 Aligned_cols=180 Identities=12% Similarity=0.079 Sum_probs=107.9
Q ss_pred CeEEEEecCccce----eecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc
Q 048178 119 NRITLWNIATRES----VTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS 194 (376)
Q Consensus 119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~ 194 (376)
..++.+|+.+++| ..+|++|...... .+..++ + +|..++... .. .....+++|++++++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-------~~~~~~---~--~iYv~GG~~-~~----~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENG-------SACYKD---G--TLYVGGGNR-NG----KPSNKSYLFNLETQE 150 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCc-------eEEEEC---C--EEEEEeCcC-CC----ccCceEEEEcCCCCC
Confidence 4678899999987 6778776543211 111222 1 444443211 11 224689999999999
Q ss_pred eEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeec-CCCCCCC---CCceeEEEecCeEEEE
Q 048178 195 WRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-GPCTLES---SLDVTLGIYDQSLSLL 270 (376)
Q Consensus 195 W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~~~~---~~~~~l~~~~g~L~l~ 270 (376)
|+.++.+|.........+.++|.+|.+++..... ...+.+||+++++|+.++ ++..... .....++..+++|+++
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 229 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI 229 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence 9998866532222334568999999988754221 234789999999999884 3211111 0122344557889998
Q ss_pred EecCC-----------------------------------CCEEEEEEeCCCceeeEEEECCC-CceeeeEEEeeCCcEE
Q 048178 271 LLDTV-----------------------------------DHCFKIWVMQKKNWIKQSSVGPF-IGIFQPLLFWKKGAFF 314 (376)
Q Consensus 271 ~~~~~-----------------------------------~~~l~vW~l~~~~W~~~~~i~~~-~~~~~~~~~~~~g~i~ 314 (376)
+.... ...++++..+..+|..+..+ |. ......++ .-++.|+
T Consensus 230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~~r~~~~~~-~~~~~iy 307 (323)
T TIGR03548 230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS-PFFARCGAALL-LTGNNIF 307 (323)
T ss_pred CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc-cccccCchheE-EECCEEE
Confidence 87321 13577777777889998766 42 22222233 3367788
Q ss_pred EEEc
Q 048178 315 VESN 318 (376)
Q Consensus 315 ~~~~ 318 (376)
+...
T Consensus 308 v~GG 311 (323)
T TIGR03548 308 SING 311 (323)
T ss_pred EEec
Confidence 7754
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.18 E-value=0.00013 Score=66.38 Aligned_cols=211 Identities=9% Similarity=0.079 Sum_probs=124.1
Q ss_pred CCeEEEEecCccceeecC--CCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCC--CCCCcceEEEEEcCCC
Q 048178 118 NNRITLWNIATRESVTLP--KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD--SSCPFSLVTVYNLSTN 193 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP--~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~--~~~~~~~~~vyss~t~ 193 (376)
.+.+|.+|--+.+|+.+- .+|.++..+ .....++. ++.+......+.. .-..-....+|++.++
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRssh--------q~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr 164 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSH--------QAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTR 164 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccc--------eeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccc
Confidence 356899999999999864 333322221 11112222 2222111111100 0011246788999999
Q ss_pred ceEeccccCcccc-CCCCeEEECceEEEEeeecCCC----CccEEEEEECCCceEeeecCCCCCCC-CCceeEEEe-cCe
Q 048178 194 SWRNLKSIDYTMR-LSSERTYFDGAFYWLLKLENDN----DNYVILSFHMAEEKFQEIQGPCTLES-SLDVTLGIY-DQS 266 (376)
Q Consensus 194 ~W~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~----~~~~i~~fD~~~e~~~~i~lP~~~~~-~~~~~l~~~-~g~ 266 (376)
.|..+...-.+.+ .....|...-.|.-+++..+.. ...-+.+||+.+=+|+.+..+..... ...+++.+. .|.
T Consensus 165 kweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~ 244 (521)
T KOG1230|consen 165 KWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG 244 (521)
T ss_pred hheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc
Confidence 9999874322222 2223555555555555443322 23358999999999999965443222 134677777 888
Q ss_pred EEEEEec----------CCCCEEEEEEeCC-------CceeeEEEEC--CCCceeeeEEEeeCCc-EEEEE--c------
Q 048178 267 LSLLLLD----------TVDHCFKIWVMQK-------KNWIKQSSVG--PFIGIFQPLLFWKKGA-FFVES--N------ 318 (376)
Q Consensus 267 L~l~~~~----------~~~~~l~vW~l~~-------~~W~~~~~i~--~~~~~~~~~~~~~~g~-i~~~~--~------ 318 (376)
+++.+.. .+..+-++|.|+. -.|.++...+ |.+...-.++++++++ ++|-. +
T Consensus 245 i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE 324 (521)
T KOG1230|consen 245 IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE 324 (521)
T ss_pred EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch
Confidence 8888772 3445779999977 3588876554 3333345577787766 44431 1
Q ss_pred ------CCeEEEEeCCCCcEEEEEEecc
Q 048178 319 ------SSQLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 319 ------~~~~~~yd~~t~~~~~v~~~~~ 340 (376)
.+.|+.||+..++|...++++.
T Consensus 325 sl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred hhhhhhhhhhhheecccchhhHhhhccC
Confidence 1249999999999998887764
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.99 E-value=0.00021 Score=61.39 Aligned_cols=211 Identities=12% Similarity=0.119 Sum_probs=120.6
Q ss_pred CCeEEEEecCccceeecCCCCCCC--CCccccccceEEEeeeCCCCCeEEEEEEEE-E--ecCCCCCCCcceEEEEEcCC
Q 048178 118 NNRITLWNIATRESVTLPKYRAII--PQYTRVFGTKIGFGLDPKTKDYKVVLILTL-W--DEKRDSSCPFSLVTVYNLST 192 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~--~~~~~~~~~~~~~~vyss~t 192 (376)
.-.+.|.|-.+-+|..+|+--... ...+. ..-|- .-...||.+... + .........+....-|+.++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp------~VPyq--RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYP------AVPYQ--RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET 114 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCC------ccchh--hcCceEEEEcceEEEEcCccCcccccceeeeecccc
Confidence 446799999999999999842211 11110 00000 001223322110 0 01111113467888899999
Q ss_pred CceEeccc---cCccccCCCCeEEECceEEEEeeecCCC--CccEEEEEECCCceEeeec---CCCCCCCCCceeEEEec
Q 048178 193 NSWRNLKS---IDYTMRLSSERTYFDGAFYWLLKLENDN--DNYVILSFHMAEEKFQEIQ---GPCTLESSLDVTLGIYD 264 (376)
Q Consensus 193 ~~W~~~~~---~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~e~~~~i~---lP~~~~~~~~~~l~~~~ 264 (376)
+.|+..+. .|. .....++++.+..+|-+++..+.. ...-+.++|+++.+|+.+. -|+.-.+ -....+++
T Consensus 115 ~~W~~p~v~G~vPg-aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD--FH~a~~~~ 191 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPG-ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD--FHTASVID 191 (392)
T ss_pred ccccccceeeecCC-ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh--hhhhhhcc
Confidence 99997652 222 113345778888899887654322 3446899999999999983 3444322 12345567
Q ss_pred CeEEEEEecCCC------------CEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc--------CCeE
Q 048178 265 QSLSLLLLDTVD------------HCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN--------SSQL 322 (376)
Q Consensus 265 g~L~l~~~~~~~------------~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~--------~~~~ 322 (376)
+..++++.+.+. .++.+..+..+.|.+-..-. |...-.. ..+.=+|++++... -..+
T Consensus 192 ~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH-S~fvYng~~Y~FGGYng~ln~HfndL 270 (392)
T KOG4693|consen 192 GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH-STFVYNGKMYMFGGYNGTLNVHFNDL 270 (392)
T ss_pred ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc-ceEEEcceEEEecccchhhhhhhcce
Confidence 778888773111 23444444448888753221 1111122 22233788887643 2359
Q ss_pred EEEeCCCCcEEEEEEecc
Q 048178 323 LLYEPGTGELRDFELECC 340 (376)
Q Consensus 323 ~~yd~~t~~~~~v~~~~~ 340 (376)
+.||++|..|+.|...|+
T Consensus 271 y~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 271 YCFDPKTSMWSVISVRGK 288 (392)
T ss_pred eecccccchheeeeccCC
Confidence 999999999999988775
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.91 E-value=0.00025 Score=60.87 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=89.4
Q ss_pred cceEEEEEcCCCceEeccc--cCccccCCCCeEEECceEEEEeeecCCC---------CccEEEEEECCCceEeee----
Q 048178 182 FSLVTVYNLSTNSWRNLKS--IDYTMRLSSERTYFDGAFYWLLKLENDN---------DNYVILSFHMAEEKFQEI---- 246 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~--~~~~~~~~~~~v~~~G~lywl~~~~~~~---------~~~~i~~fD~~~e~~~~i---- 246 (376)
...+++++..|-.|+.+.- .|........++.++|.+|-+++..+.. ....|++||++++.|...
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 4577888889999998752 2222222335788889999998765432 245799999999999765
Q ss_pred cCCCCCCCCCceeEEEecCeEEEEEecC---CCCEEEEEEeCC--CceeeEEEECCCCce-eeeEEEeeCCcEEEEEc
Q 048178 247 QGPCTLESSLDVTLGIYDQSLSLLLLDT---VDHCFKIWVMQK--KNWIKQSSVGPFIGI-FQPLLFWKKGAFFVESN 318 (376)
Q Consensus 247 ~lP~~~~~~~~~~l~~~~g~L~l~~~~~---~~~~l~vW~l~~--~~W~~~~~i~~~~~~-~~~~~~~~~g~i~~~~~ 318 (376)
..|.... .....+++|++++++... ....-++|..+. .-|.++..-+-.+.- .+-.++..++++++...
T Consensus 236 ~~P~GRR---SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 236 MKPGGRR---SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred cCCCccc---ccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 2333332 257889999999999831 123448899888 779988654422222 33345555788777644
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.82 E-value=0.002 Score=58.84 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCceEeccccCccccC-CCCeEEE-CceEEEEeeecCCCC------ccEEEEEECCCceEeeecCCCCCCC
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRL-SSERTYF-DGAFYWLLKLENDND------NYVILSFHMAEEKFQEIQGPCTLES 254 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~-~~~~v~~-~G~lywl~~~~~~~~------~~~i~~fD~~~e~~~~i~lP~~~~~ 254 (376)
.....|+.++++|+.+.++..+.+. ...+|.+ .|.+|.+++...+.+ ..-+-.||+.+.+|..+.++.....
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 4678899999999998865444442 2234444 466665555443321 2247899999999999988765544
Q ss_pred CCceeEEEecCeEEEEEe-cCCCC------EEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc-------
Q 048178 255 SLDVTLGIYDQSLSLLLL-DTVDH------CFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN------- 318 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~-~~~~~------~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~------- 318 (376)
.....++.++..|.+++. ++... .+.+..|+...|.++..-+ |-+.-.+-+.+...|.|++...
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~k 257 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVK 257 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhh
Confidence 445789999999999988 32111 3344445558899987533 3332344456676788877632
Q ss_pred --------CCeEEEEeCCC-----CcEEEEE
Q 048178 319 --------SSQLLLYEPGT-----GELRDFE 336 (376)
Q Consensus 319 --------~~~~~~yd~~t-----~~~~~v~ 336 (376)
...++..++++ -+|.++.
T Consensus 258 K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 258 KDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred hhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 12388999998 3455553
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.66 E-value=0.0045 Score=60.18 Aligned_cols=207 Identities=11% Similarity=0.038 Sum_probs=120.9
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++++|--+..|................. .+..+ + +++.++. .... . .....+..|+..|+.|+.+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~--~~~~~------~-~l~lfGG-~~~~-~--~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHS--LSAVG------D-KLYLFGG-TDKK-Y--RNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccccee--EEEEC------C-eEEEEcc-ccCC-C--CChhheEeccCCCCcEEEec
Confidence 48999999988887654433221111100 01111 2 3333321 1111 1 23569999999999999876
Q ss_pred ccCc-ccc-CCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeeecCCCCCCCC-CceeEEEecCeEEEEEecC-
Q 048178 200 SIDY-TMR-LSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEIQGPCTLESS-LDVTLGIYDQSLSLLLLDT- 274 (376)
Q Consensus 200 ~~~~-~~~-~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i~lP~~~~~~-~~~~l~~~~g~L~l~~~~~- 274 (376)
.... +.+ .....+..+.++|.+++.+... ....+.+||+++.+|..+......... ....+++.+++++++....
T Consensus 156 ~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~ 235 (482)
T KOG0379|consen 156 PTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD 235 (482)
T ss_pred CcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc
Confidence 4332 111 3334666777788777655332 356799999999999988432222221 2256788899999988832
Q ss_pred CC-CEEEEEEeCC--CceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc-------CCeEEEEeCCCCcEEEEEEec
Q 048178 275 VD-HCFKIWVMQK--KNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN-------SSQLLLYEPGTGELRDFELEC 339 (376)
Q Consensus 275 ~~-~~l~vW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~-------~~~~~~yd~~t~~~~~v~~~~ 339 (376)
.. .-=++|.++- .+|.++...+ |-..+.....+..+.-+++... -+.++.||.+++.|.++...+
T Consensus 236 ~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 236 GDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred CCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 22 2337888877 7788554332 3333445444332222334322 234889999999999986554
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=9.9e-05 Score=64.73 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHH
Q 048178 5 GNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFI 46 (376)
Q Consensus 5 ~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~ 46 (376)
.+..||||+++.||+.|+.|+|.+...|||||+++.++...-
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 368999999999999999999999999999999998776543
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.21 E-value=0.026 Score=54.91 Aligned_cols=152 Identities=8% Similarity=0.079 Sum_probs=98.6
Q ss_pred eEEEEEcCCCceEeccccC-cccc-CCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeeec----CCCCCCCCC
Q 048178 184 LVTVYNLSTNSWRNLKSID-YTMR-LSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEIQ----GPCTLESSL 256 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~-~~~~-~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i~----lP~~~~~~~ 256 (376)
.+.+++..+..|......- ...+ .....+.++..||.+++..... ....+.+||+.+.+|..+. .|+....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~-- 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG-- 166 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCccc--
Confidence 5888888888897654211 1112 3345778899999988766321 2357999999999998873 2433332
Q ss_pred ceeEEEecCeEEEEEecCC-C-CEEEEEEeCC--CceeeEEEECCCC--ceeeeEEEeeCCcEEEEE-cC------CeEE
Q 048178 257 DVTLGIYDQSLSLLLLDTV-D-HCFKIWVMQK--KNWIKQSSVGPFI--GIFQPLLFWKKGAFFVES-NS------SQLL 323 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~-~-~~l~vW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~g~i~~~~-~~------~~~~ 323 (376)
..+++.+.+|++.+.... . ..-++|+++- ..|.++.+.++.+ .....+.+. ++.+++.. .. .-+.
T Consensus 167 -Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 167 -HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred -ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceE
Confidence 466777778999888321 2 4557777666 7799998886332 234444444 45544432 22 2399
Q ss_pred EEeCCCCcEEEEEEec
Q 048178 324 LYEPGTGELRDFELEC 339 (376)
Q Consensus 324 ~yd~~t~~~~~v~~~~ 339 (376)
.+|+.+.+|+++...+
T Consensus 245 ~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 245 ILDLSTWEWKLLPTGG 260 (482)
T ss_pred eeecccceeeeccccC
Confidence 9999999999765444
No 33
>PF13964 Kelch_6: Kelch motif
Probab=96.42 E-value=0.0089 Score=38.20 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCeEEECceEEEEeeecC-CCCccEEEEEECCCceEeee-cCCC
Q 048178 209 SERTYFDGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEI-QGPC 250 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i-~lP~ 250 (376)
.++|.++|.||.+++... ......+..||+++++|+.+ ++|.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 357899999999998765 23356899999999999998 5553
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.33 E-value=0.0015 Score=57.63 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHhcCC-----ccccceeeecchhhhhhcCChHHHHHHhh
Q 048178 7 DDSPEDIMIEILSRLP-----VKSLIRLRCVCKSWYALIKNPNFISMHLK 51 (376)
Q Consensus 7 ~~LP~Dll~eIl~rLp-----~~~l~r~r~VcK~W~~li~~p~F~~~~~~ 51 (376)
..||||+|.+||.++= ..+|.++.+|||.|+-..++|+|-+.-+.
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 6899999999998765 49999999999999999999999876654
No 35
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.98 E-value=0.51 Score=41.60 Aligned_cols=121 Identities=11% Similarity=0.237 Sum_probs=81.7
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCC---------CceeEEEecCeEEEEEecC-CC
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESS---------LDVTLGIYDQSLSLLLLDT-VD 276 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~---------~~~~l~~~~g~L~l~~~~~-~~ 276 (376)
++..|+.||.+|+-... ...|+.||+.+++.. ...||...... ....+++-+..|-++.... ..
T Consensus 71 GtG~vVYngslYY~~~~-----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYN-----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred cCCeEEECCcEEEEecC-----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 45678999999998764 458999999999988 77888765431 1256777777799988832 23
Q ss_pred CEEEEEEeCC------CceeeEEEECCCCceeeeEEEeeCCcEEEEEc-----CCeEEEEeCCCCcEEEEEEe
Q 048178 277 HCFKIWVMQK------KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-----SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 277 ~~l~vW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~yd~~t~~~~~v~~~ 338 (376)
.++.|-.++. ..|.-- + +.....- +|.-+|.++.... ..-.++||+.+++-+.+.+.
T Consensus 146 g~ivvskld~~tL~v~~tw~T~--~-~k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNTS--Y-PKRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CcEEEEeeCcccCceEEEEEec--c-Cchhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 4688888887 456532 2 2222222 3333577776633 23478999999988877654
No 36
>smart00284 OLF Olfactomedin-like domains.
Probab=95.60 E-value=0.89 Score=39.93 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCC---------CCceeEEEecCeEEEEEe-cCCC
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLES---------SLDVTLGIYDQSLSLLLL-DTVD 276 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~---------~~~~~l~~~~g~L~l~~~-~~~~ 276 (376)
+...|+.||++|+-... ...|+-||+++++.... .||..... .....+++-+..|-++.. ....
T Consensus 76 GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 76 GTGVVVYNGSLYFNKFN-----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred cccEEEECceEEEEecC-----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 44689999999996544 34799999999999654 57753211 123667887888988888 3335
Q ss_pred CEEEEEEeCC------CceeeEEEECCCCceeeeEEEeeCCcEEEEEc-----CCeEEEEeCCCCcEEEEEEe
Q 048178 277 HCFKIWVMQK------KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-----SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 277 ~~l~vW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~yd~~t~~~~~v~~~ 338 (376)
.+|.|-.|+. ..|.-- + +..... -+|.-+|.++.... ..-.++||+.|++-+.+.+.
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~--~-~k~sa~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITT--Y-NKRSAS--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcC--C-Cccccc--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 7888888887 455542 2 222221 13333577776632 23488999999887766553
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.44 E-value=0.0077 Score=53.78 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=39.1
Q ss_pred CCCC----HHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHh
Q 048178 7 DDSP----EDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL 50 (376)
Q Consensus 7 ~~LP----~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~ 50 (376)
..|| +++.+.||+.|...+|..+..|||+|+.+++++-.-++..
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 5689 9999999999999999999999999999999887665543
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.42 E-value=0.045 Score=34.22 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=32.8
Q ss_pred CeEEECceEEEEeeecC-CCCccEEEEEECCCceEeee-cCC
Q 048178 210 ERTYFDGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEI-QGP 249 (376)
Q Consensus 210 ~~v~~~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i-~lP 249 (376)
.++.++|.+|.+++... ......+..||+.+++|..+ ++|
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 47899999999998765 33466899999999999988 554
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.70 E-value=0.5 Score=41.48 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCCCccceeeeeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEec
Q 048178 96 TQEPVLGSFKGLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDE 174 (376)
Q Consensus 96 p~~~~~~~~~~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~ 174 (376)
|+..-..-+++.-+|=|-...- .+.+.-.||.++.--++|.+...... . -....|+... +++..
T Consensus 186 PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g-s------Rriwsdpig~----~witt---- 250 (353)
T COG4257 186 PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG-S------RRIWSDPIGR----AWITT---- 250 (353)
T ss_pred CCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccc-c------cccccCccCc----EEEec----
Confidence 4443334677777888766643 56678889999987778877542211 1 1244444332 22221
Q ss_pred CCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCC
Q 048178 175 KRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLE 253 (376)
Q Consensus 175 ~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~ 253 (376)
...-.+.-|+..+.+|..-+ +|..- ......+++.. .-|+..-+ ..+|..||.++++|+++++|....
T Consensus 251 -----wg~g~l~rfdPs~~sW~eyp-LPgs~-arpys~rVD~~grVW~sea~----agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 251 -----WGTGSLHRFDPSVTSWIEYP-LPGSK-ARPYSMRVDRHGRVWLSEAD----AGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred -----cCCceeeEeCcccccceeee-CCCCC-CCcceeeeccCCcEEeeccc----cCceeecCcccceEEEecCCCCCC
Confidence 33668889999999999875 32222 22345666543 56776554 558999999999999998886543
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=94.20 E-value=0.15 Score=32.26 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=30.9
Q ss_pred CeEEECceEEEEeee---cCCCCccEEEEEECCCceEeeecC
Q 048178 210 ERTYFDGAFYWLLKL---ENDNDNYVILSFHMAEEKFQEIQG 248 (376)
Q Consensus 210 ~~v~~~G~lywl~~~---~~~~~~~~i~~fD~~~e~~~~i~l 248 (376)
.++.++++||.+++. ........+..||+++.+|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 578999999999887 222246678999999999998843
No 41
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.41 E-value=3.3 Score=35.84 Aligned_cols=117 Identities=8% Similarity=0.100 Sum_probs=70.1
Q ss_pred EECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCC--CCC-ceeEEEe--cCe--EEEEEec---CCCCEEEEE
Q 048178 213 YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLE--SSL-DVTLGIY--DQS--LSLLLLD---TVDHCFKIW 282 (376)
Q Consensus 213 ~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~--~~~-~~~l~~~--~g~--L~l~~~~---~~~~~l~vW 282 (376)
.|||-+ ++... ..+...|+.|.++..+|.|+... ... ...++.- .+. +..+... .....++|+
T Consensus 3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred ccceEE-EEecC------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 478888 44432 37999999999999997665421 111 1222221 222 2222221 124688999
Q ss_pred EeCCCceeeEEEECCCCce-eeeEEEeeCCcEEEEEc-C----C-eEEEEeCCCCcEEE-EEEe
Q 048178 283 VMQKKNWIKQSSVGPFIGI-FQPLLFWKKGAFFVESN-S----S-QLLLYEPGTGELRD-FELE 338 (376)
Q Consensus 283 ~l~~~~W~~~~~i~~~~~~-~~~~~~~~~g~i~~~~~-~----~-~~~~yd~~t~~~~~-v~~~ 338 (376)
.++.++|..+... +.... ... ++.-+|.++.... . . .++.||+++.+++. +...
T Consensus 76 s~~~~~Wr~~~~~-~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 76 TLGSNSWRTIECS-PPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EeCCCCccccccC-CCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 9999999998643 22111 222 5555788775432 1 1 69999999999995 6543
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.02 E-value=10 Score=37.56 Aligned_cols=282 Identities=12% Similarity=0.058 Sum_probs=133.0
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC-CcEEEEeeeccCccCC---CCCceeEE--
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN-TRLIVIYAKEDNTEEH---SHPKEYFC-- 79 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~-~~~l~~~~~~~~~~~~---~~~~~~~~-- 79 (376)
...||.++...||..|+.+++.++++||+.|+.++.+.....+....... .+--.-..... ... ......+.
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ks~~~~~ 185 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPL--KSGFKGRPWKSFYRRR 185 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCccccc--ccccccchhhhhhhhh
Confidence 57899999999999999999999999999999999876655533222211 00000000000 000 00000000
Q ss_pred --ecCCCCccccc-cccCCCCCCccceeee-eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEe
Q 048178 80 --LFPDETLEDLS-LQDLSTQEPVLGSFKG-LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFG 155 (376)
Q Consensus 80 --~~~~~~~~~~~-~~~l~p~~~~~~~~~~-s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g 155 (376)
........... ...+-+.. ....+.. =.+|.+........+.+|+..+++...-+..... .. .-++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~--g~------V~~l~ 256 (537)
T KOG0274|consen 186 FRLSKNWRKLFRRGYKVLLGTD-DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF--GG------VWGLA 256 (537)
T ss_pred hhccccccccccccceeecccC-cchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCC--CC------ceeEE
Confidence 00000000000 00000100 0000101 1155665555667778999999998775433211 11 12444
Q ss_pred eeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEE
Q 048178 156 LDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVI 233 (376)
Q Consensus 156 ~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i 233 (376)
+.. .+.|++--. ....+.|-+..++.=.. .+....+.+.+ .+..+-..+. ....|
T Consensus 257 ~~~--~~~~lvsgS-----------~D~t~rvWd~~sg~C~~------~l~gh~stv~~~~~~~~~~~sgs----~D~tV 313 (537)
T KOG0274|consen 257 FPS--GGDKLVSGS-----------TDKTERVWDCSTGECTH------SLQGHTSSVRCLTIDPFLLVSGS----RDNTV 313 (537)
T ss_pred Eec--CCCEEEEEe-----------cCCcEEeEecCCCcEEE------EecCCCceEEEEEccCceEeecc----CCceE
Confidence 442 344444432 13455554444442111 11111122211 2222222211 25588
Q ss_pred EEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-c
Q 048178 234 LSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-A 312 (376)
Q Consensus 234 ~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~ 312 (376)
.+.|+++...-.+.-= .. ....-+.+++.+.+.+.. +..+.||.... =.-++.+... ...+.++.-++ .
T Consensus 314 kVW~v~n~~~l~l~~~--h~--~~V~~v~~~~~~lvsgs~--d~~v~VW~~~~--~~cl~sl~gH--~~~V~sl~~~~~~ 383 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRG--HT--GPVNCVQLDEPLLVSGSY--DGTVKVWDPRT--GKCLKSLSGH--TGRVYSLIVDSEN 383 (537)
T ss_pred EEEeccCcceEEEecc--cc--ccEEEEEecCCEEEEEec--CceEEEEEhhh--ceeeeeecCC--cceEEEEEecCcc
Confidence 9999997766544220 11 123344456666666654 45999998874 1222333111 12222222233 4
Q ss_pred EEEE-EcCCeEEEEeCCCCc
Q 048178 313 FFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 313 i~~~-~~~~~~~~yd~~t~~ 331 (376)
.++. ..++.+-++|++++.
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred eEEeeeeccceEeecCCchh
Confidence 4544 345668889998883
No 43
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.91 E-value=5.2 Score=35.37 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=71.6
Q ss_pred ECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 214 FDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 214 ~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
-+|.+|=-++... ...|..+|+++++.. ..++|...-. --++..+++|+++... ....-+|..+. ..++
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~Fg---EGit~~~d~l~qLTWk--~~~~f~yd~~t--l~~~ 123 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFG---EGITILGDKLYQLTWK--EGTGFVYDPNT--LKKI 123 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--E---EEEEEETTEEEEEESS--SSEEEEEETTT--TEEE
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccc---eeEEEECCEEEEEEec--CCeEEEEcccc--ceEE
Confidence 4677776555442 668999999998774 5699886532 4688889999999996 66777777765 5566
Q ss_pred EEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEE-EEEE
Q 048178 293 SSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELR-DFEL 337 (376)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~-~v~~ 337 (376)
.++ +++. .-=|++.+|+ +++.....++...|+++-+.. +|.+
T Consensus 124 ~~~-~y~~--EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTF-PYPG--EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEE-E-SS--S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EEE-ecCC--cceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 565 4442 2234445555 777788889999999986443 4444
No 44
>PF13964 Kelch_6: Kelch motif
Probab=92.83 E-value=0.31 Score=30.91 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.3
Q ss_pred CeEEEEecCccceeecCCCCCC
Q 048178 119 NRITLWNIATRESVTLPKYRAI 140 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~ 140 (376)
+.+.++||.|++|..+|+++..
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCCC
Confidence 5789999999999999988753
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.55 E-value=7.1 Score=34.57 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=114.8
Q ss_pred eecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCcccc--------ccce-EEEeeeCCCCCeEEEEEEEEEecCC
Q 048178 107 LYCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRV--------FGTK-IGFGLDPKTKDYKVVLILTLWDEKR 176 (376)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~--------~~~~-~~~g~d~~~~~ykvv~~~~~~~~~~ 176 (376)
+-+|-|-+.. ....+-=.||.|++....|......++.... .-.. ...-+|+++..++=.-+.. +.
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---~~- 145 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---EH- 145 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---cc-
Confidence 4466554443 3444556799999999988766544321100 0000 0111233222222211110 11
Q ss_pred CCCCCcceEEEEEcCCCceEeccc-----c-C--c---ccc----CCCCeEE--ECceEEEEeeecCCCCccEEEEEECC
Q 048178 177 DSSCPFSLVTVYNLSTNSWRNLKS-----I-D--Y---TMR----LSSERTY--FDGAFYWLLKLENDNDNYVILSFHMA 239 (376)
Q Consensus 177 ~~~~~~~~~~vyss~t~~W~~~~~-----~-~--~---~~~----~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~ 239 (376)
...+.+-.||+-..+-|-.-+. + | . .++ ...++++ -||.+|+-...+ .+|.-.|..
T Consensus 146 --a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag-----naiaridp~ 218 (353)
T COG4257 146 --ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG-----NAIARIDPF 218 (353)
T ss_pred --CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc-----cceEEcccc
Confidence 2447788899999999964331 0 0 0 011 2223444 479998765443 389999999
Q ss_pred CceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCc-eeeeEEEeeCCcEEEE-E
Q 048178 240 EEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIG-IFQPLLFWKKGAFFVE-S 317 (376)
Q Consensus 240 ~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~-~ 317 (376)
+..-.+++.|.........--..--|.+-..... ...+..+.-...+|..-. + |-.. -...+.+...|.+++. .
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg--~g~l~rfdPs~~sW~eyp-L-Pgs~arpys~rVD~~grVW~sea 294 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--TGSLHRFDPSVTSWIEYP-L-PGSKARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccC--CceeeEeCcccccceeee-C-CCCCCCcceeeeccCCcEEeecc
Confidence 9888888888774332111111223333333322 233333333335565532 3 2211 1222444556778886 4
Q ss_pred cCCeEEEEeCCCCcEEEEEEe
Q 048178 318 NSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 318 ~~~~~~~yd~~t~~~~~v~~~ 338 (376)
..+.+.-||++|.+++.+.+.
T Consensus 295 ~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 295 DAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ccCceeecCcccceEEEecCC
Confidence 567799999999999998775
No 46
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.52 E-value=4.3 Score=38.93 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=100.4
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCC--ceE
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTN--SWR 196 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~--~W~ 196 (376)
..+.|+|-+|+||.. |......+..- ..+||.+| .-||+.++.. .+ .....=+.|.+... .||
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgc----AA~Gfvcd----GtrilvFGGM-vE-----YGkYsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGC----AAFGFVCD----GTRILVFGGM-VE-----YGKYSNDLYELQASRWEWK 121 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCch----hhcceEec----CceEEEEccE-ee-----eccccchHHHhhhhhhhHh
Confidence 468999999999974 44333222221 12345544 2345554321 01 11344456666554 567
Q ss_pred ecccc-C-cccc----CCCCeEEECceEEEEeeecCCC-----------CccEEEEEECCCce--Eeee----cCCCCCC
Q 048178 197 NLKSI-D-YTMR----LSSERTYFDGAFYWLLKLENDN-----------DNYVILSFHMAEEK--FQEI----QGPCTLE 253 (376)
Q Consensus 197 ~~~~~-~-~~~~----~~~~~v~~~G~lywl~~~~~~~-----------~~~~i~~fD~~~e~--~~~i----~lP~~~~ 253 (376)
.+..- | ...+ ...+-+..+.+.|.+++-.+++ +..+++-+-..... |... .+|+...
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE 201 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE 201 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence 66532 1 1111 2334567778899887644322 23455555545543 3321 4565555
Q ss_pred CCCceeEEEecC-e--EEEEEecCCCCEEEEEEeCC--CceeeEEEEC--CCCceeeeEEEeeCCcEEEEE---------
Q 048178 254 SSLDVTLGIYDQ-S--LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVG--PFIGIFQPLLFWKKGAFFVES--------- 317 (376)
Q Consensus 254 ~~~~~~l~~~~g-~--L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~--------- 317 (376)
.+...-.++-+. + +++.+.-.+.+-=++|.|+- ..|.+...-+ |++.-.+..... +++.|+..
T Consensus 202 SHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~ 280 (830)
T KOG4152|consen 202 SHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDD 280 (830)
T ss_pred cceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee-cceeEEecceeeeeccc
Confidence 421111112222 2 44444322334448999987 8899864222 444221111111 12222210
Q ss_pred -----------cCCeEEEEeCCCCcEEEEEE
Q 048178 318 -----------NSSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 318 -----------~~~~~~~yd~~t~~~~~v~~ 337 (376)
....+-++|++|..|+.+-.
T Consensus 281 ~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 281 VKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred cccccccceeeeccceeeeeecchheeeeee
Confidence 12348899999999998844
No 47
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.48 E-value=6.4 Score=33.89 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=95.4
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+|.+++......++.+|+.|++.+.--..+...... ... .+=+|+... . ...+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--------~~~-----~~~~v~v~~-----~------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--------PVV-----DGGRVYVGT-----S------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--------EEE-----ETTEEEEEE-----T------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--------eee-----ccccccccc-----c------eeeeEe
Confidence 6888888888888999999999865422222111000 011 011222221 0 226777
Q ss_pred EEcCCC--ceE-eccccCcccc-CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceE--ee-ecCCCCCCC-----C
Q 048178 188 YNLSTN--SWR-NLKSIDYTMR-LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF--QE-IQGPCTLES-----S 255 (376)
Q Consensus 188 yss~t~--~W~-~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~--~~-i~lP~~~~~-----~ 255 (376)
++..++ .|+ .....+.... ........++.+|.....+ .+.++|+++.+- .. +..|..... .
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 164 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSD 164 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS------EEEEEETTTTEEEEEEESSTT-SS--EEEETT
T ss_pred cccCCcceeeeeccccccccccccccCceEecCEEEEEeccC------cEEEEecCCCcEEEEeecCCCCCCcceeeecc
Confidence 776666 698 3432211111 1222333456666554333 899999987654 33 233332111 0
Q ss_pred CceeEEEecCeEEEEEecCCCCEEEEEEeCCCc--eeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 256 LDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKN--WIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~--W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
....+...+|.+++...+ ...+.+ .++.++ |... + ..... .....++.+++...+++++.+|++|++..
T Consensus 165 ~~~~~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~---~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 165 INGSPVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--I---SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--S---S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred cccceEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--C---CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 112334446656665543 334555 555533 6222 3 11111 12233455666677899999999999865
Q ss_pred E
Q 048178 334 D 334 (376)
Q Consensus 334 ~ 334 (376)
.
T Consensus 236 W 236 (238)
T PF13360_consen 236 W 236 (238)
T ss_dssp E
T ss_pred e
Confidence 4
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.03 E-value=4.8 Score=35.23 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=93.4
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCC----ceEeeecCCCCCCCC-C
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAE----EKFQEIQGPCTLESS-L 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~----e~~~~i~lP~~~~~~-~ 256 (376)
.....+|+..|++++.+......+. ....+.-||.+.-.++...+ ...+-.|+..+ ..|. +.|...... +
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FC-Sgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~--e~~~~m~~~RW 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFC-SGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWT--ESPNDMQSGRW 119 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcc-cCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCce--ECcccccCCCc
Confidence 5567889999999998874322222 22345668887766555433 45677788654 3343 444333322 3
Q ss_pred ceeEEEe-cCeEEEEEecCCCCEEEEEEeCC-----CceeeEEEEC-C-CCceeeeEEEeeCCcEEEEEcCCeEEEEeCC
Q 048178 257 DVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK-----KNWIKQSSVG-P-FIGIFQPLLFWKKGAFFVESNSSQLLLYEPG 328 (376)
Q Consensus 257 ~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-----~~W~~~~~i~-~-~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~ 328 (376)
-.....+ +|++.+++.. .....+.|--.. ..|..+.... . ...++.-+.+..+|+|++..+.+ -..||.+
T Consensus 120 YpT~~~L~DG~vlIvGG~-~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGS-NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCc-CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCC
Confidence 3444443 7888888883 255666665432 1222221110 0 11234455667799998876654 5778999
Q ss_pred CCcE-EEE-EEecceEEEEEeecCcccc
Q 048178 329 TGEL-RDF-ELECCWFSIYIYTESLITL 354 (376)
Q Consensus 329 t~~~-~~v-~~~~~~~~~~~y~~sLv~~ 354 (376)
++++ +.+ .+.+. ++.++...+-+-+
T Consensus 198 ~n~v~~~lP~lPg~-~R~YP~sgssvmL 224 (243)
T PF07250_consen 198 TNTVVRTLPDLPGG-PRNYPASGSSVML 224 (243)
T ss_pred CCeEEeeCCCCCCC-ceecCCCcceEEe
Confidence 9976 555 34443 4455555554433
No 49
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.70 E-value=3.8 Score=38.09 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=72.2
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+.-|++.+......|+++.|+....+|.+........ .+.. .+. |..+.................|+
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pi-----sv~V-----G~~--LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPI-----SVSV-----GDK--LYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcceE-----EEEe-----CCe--EEEeeccCccccccCccceeEEE
Confidence 45555555444556999999999999998654332221 1122 122 44443211111000000014444
Q ss_pred E--E--------cCCCceEeccccCccccC-------CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee---c
Q 048178 188 Y--N--------LSTNSWRNLKSIDYTMRL-------SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI---Q 247 (376)
Q Consensus 188 y--s--------s~t~~W~~~~~~~~~~~~-------~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~ 247 (376)
+ . .++.+|+.++.+|..... ...+|+ +|.--|+...+. .....+||+++.+|+.. .
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~---~~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR---RWGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC---ceEEEEEEcCCcceeecccee
Confidence 4 3 223478888765533221 123555 888888865531 12699999999999987 7
Q ss_pred CCCCCCC
Q 048178 248 GPCTLES 254 (376)
Q Consensus 248 lP~~~~~ 254 (376)
||.....
T Consensus 219 LPF~G~a 225 (342)
T PF07893_consen 219 LPFHGQA 225 (342)
T ss_pred cCcCCcc
Confidence 8876543
No 50
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.33 E-value=5.1 Score=37.74 Aligned_cols=143 Identities=9% Similarity=0.186 Sum_probs=84.3
Q ss_pred cceEEEEEcCCCceEeccccCc-cccCCCCeEEECce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCcee
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDY-TMRLSSERTYFDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVT 259 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~-~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~ 259 (376)
...+.+|-.....=..+.++.. ..|......+-+|. .-+.+.. ..++.+||+++.+...+..|.......-..
T Consensus 234 d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~k~~~~~g~e~~~~e~ 308 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVTKLKPPYGVEEKSMER 308 (514)
T ss_pred CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccccccCCCCcccchhhe
Confidence 4567777766543334444321 22233344555776 4333333 568999999999999998887776321122
Q ss_pred EEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEEE
Q 048178 260 LGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 260 l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
.-+. ++...++... ...|.+-..+.++|.--..| + ....-+.+..+|+ |+.+..++.++++|+++++...
T Consensus 309 FeVShd~~fia~~G~--~G~I~lLhakT~eli~s~Ki-e--G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGN--NGHIHLLHAKTKELITSFKI-E--GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred eEecCCCCeEEEccc--CceEEeehhhhhhhhheeee-c--cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence 2233 3332222222 45555555555777766665 2 2345566667777 5566778899999999996544
No 51
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.26 E-value=14 Score=35.20 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=80.8
Q ss_pred ceEEEEEcCCC-----ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce---EeeecCCCCCCC
Q 048178 183 SLVTVYNLSTN-----SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK---FQEIQGPCTLES 254 (376)
Q Consensus 183 ~~~~vyss~t~-----~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~---~~~i~lP~~~~~ 254 (376)
..+.+.+..++ .|+.+..... ......-..++.+|.++..+. ....|++.|+++-. |..+-.|.....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~--~~~~~v~~~~~~~yi~Tn~~a--~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED--GVEYYVDHHGDRLYILTNDDA--PNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS--S-EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC--ceEEEEEccCCEEEEeeCCCC--CCcEEEEecccccccccceeEEcCCCCce
Confidence 56666666654 6777642111 011123345777887776332 26789999998754 654433333211
Q ss_pred CCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe--eC-CcEEEEEc----CCeEEEEeC
Q 048178 255 SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW--KK-GAFFVESN----SSQLLLYEP 327 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~--~~-g~i~~~~~----~~~~~~yd~ 327 (376)
.-..+...++.|.+...+.....+.|+.++ ..|.....- +.......++. .+ .+++|... ...++.||+
T Consensus 328 -~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~~--~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 328 -SLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREIP--LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp -EEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEE--SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred -eEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeeec--CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 113445567788887776556677777777 246655433 22223333332 22 34665532 467999999
Q ss_pred CCCcEEEEE
Q 048178 328 GTGELRDFE 336 (376)
Q Consensus 328 ~t~~~~~v~ 336 (376)
++++.+.+.
T Consensus 404 ~t~~~~~~k 412 (414)
T PF02897_consen 404 ATGELTLLK 412 (414)
T ss_dssp TTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999998875
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=90.58 E-value=0.43 Score=30.02 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=23.8
Q ss_pred CeEEE-CceEEEEeeecCC-CCccEEEEEECCCceEeee-cCC
Q 048178 210 ERTYF-DGAFYWLLKLEND-NDNYVILSFHMAEEKFQEI-QGP 249 (376)
Q Consensus 210 ~~v~~-~G~lywl~~~~~~-~~~~~i~~fD~~~e~~~~i-~lP 249 (376)
.++.+ ++.+|.+++.... .....+..||+++.+|+.+ ++|
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 35556 5888888776542 1244688999999999998 444
No 53
>smart00612 Kelch Kelch domain.
Probab=90.37 E-value=0.91 Score=27.77 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=21.5
Q ss_pred ccEEEEEECCCceEeee-cCCCCCCCCCceeEEEec
Q 048178 230 NYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYD 264 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~ 264 (376)
...+..||+++.+|+.+ ++|..... ..++.++
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~~~~ 46 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSG---HGVAVIN 46 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCcccc---ceEEEeC
Confidence 34688999999999887 55554433 3444444
No 54
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.12 E-value=12 Score=32.63 Aligned_cols=207 Identities=14% Similarity=0.064 Sum_probs=111.7
Q ss_pred ecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|-|+..+ ....++.++|.+++...+..+. ..++.++...+.+ +++. .....
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l-~v~~-------------~~~~~ 63 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL-YVAD-------------SGGIA 63 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE-EEEE-------------TTCEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE-EEEE-------------cCceE
Confidence 356666665 4678899999999876644332 1456666333222 2221 33556
Q ss_pred EEEcCCCceEeccccCccc-c--CCC-CeEEECceEEEEeeecCCC-Cc--cEEEEEECCCceEeeecCCCCCCCCCcee
Q 048178 187 VYNLSTNSWRNLKSIDYTM-R--LSS-ERTYFDGAFYWLLKLENDN-DN--YVILSFHMAEEKFQEIQGPCTLESSLDVT 259 (376)
Q Consensus 187 vyss~t~~W~~~~~~~~~~-~--~~~-~~v~~~G~lywl~~~~~~~-~~--~~i~~fD~~~e~~~~i~lP~~~~~~~~~~ 259 (376)
+++..++.++.+...+... . ..+ -.+--+|.+|.-....... .. ..+..+|.. .+...+.-. .. ...-
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~--~pNG 138 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LG--FPNG 138 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ES--SEEE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cc--cccc
Confidence 6698999888776542111 1 111 1344478877654433211 12 579999999 554443110 00 0123
Q ss_pred EEEe-cCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEE-C-CCC-ceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 260 LGIY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSV-G-PFI-GIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 260 l~~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i-~-~~~-~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
++.. +|+ |++.... ...+..+.++. ..+.....+ + +.. ....=+++..+|.|++.. ..+++..||++.+.
T Consensus 139 i~~s~dg~~lyv~ds~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETTSSEEEEEETT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCcchheeecccc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 4433 555 5555543 55555555654 335543322 1 121 123335666688899875 57889999999888
Q ss_pred EEEEEEecceEEEEEe
Q 048178 332 LRDFELECCWFSIYIY 347 (376)
Q Consensus 332 ~~~v~~~~~~~~~~~y 347 (376)
++++......+.-+.|
T Consensus 217 ~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 217 LREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEE-SSSSEEEEEE
T ss_pred EEEEcCCCCCEEEEEE
Confidence 8888877434444444
No 55
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.77 E-value=15 Score=33.14 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=83.2
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEecCeE---EEEEecCCCCEEEEEE
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIYDQSL---SLLLLDTVDHCFKIWV 283 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~~g~L---~l~~~~~~~~~l~vW~ 283 (376)
.-.+|.++|-.---+.. ...|-.||+.+..=.. +.-+.+. ....-..+.+ .++.. .++..+.||.
T Consensus 45 sitavAVs~~~~aSGss-----DetI~IYDm~k~~qlg~ll~Hags-----itaL~F~~~~S~shLlS~-sdDG~i~iw~ 113 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSS-----DETIHIYDMRKRKQLGILLSHAGS-----ITALKFYPPLSKSHLLSG-SDDGHIIIWR 113 (362)
T ss_pred ceeEEEecceeEeccCC-----CCcEEEEeccchhhhcceeccccc-----eEEEEecCCcchhheeee-cCCCcEEEEE
Confidence 34578888865443333 3479999987654322 2222211 2222223322 34444 3478999999
Q ss_pred eCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEEE-EecceEEEEEeecCccccCCCCCcc
Q 048178 284 MQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDFE-LECCWFSIYIYTESLITLKGGESVF 361 (376)
Q Consensus 284 l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~v~-~~~~~~~~~~y~~sLv~~~~~~~~~ 361 (376)
.+. |..+.++-+...-..-+++.+.|++=+. .++..+-.+|+-+++-..+. +.. . .++| ....+..
T Consensus 114 ~~~--W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~-------at~v--~w~~~Gd 181 (362)
T KOG0294|consen 114 VGS--WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-K-------ATLV--SWSPQGD 181 (362)
T ss_pred cCC--eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-c-------ceee--EEcCCCC
Confidence 876 9888887543322444677778887665 45666888888777666553 322 1 1122 2224555
Q ss_pred ccccee-eEeeeeecC
Q 048178 362 DFDIPW-HVLGVYQTE 376 (376)
Q Consensus 362 ~~~~~~-~~~~~~~~~ 376 (376)
.|-+.. -++++||+|
T Consensus 182 ~F~v~~~~~i~i~q~d 197 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLD 197 (362)
T ss_pred EEEEEeccEEEEEecc
Confidence 566444 467777775
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.55 E-value=13 Score=32.03 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=74.6
Q ss_pred eEEEEEcCCC--ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeE
Q 048178 184 LVTVYNLSTN--SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTL 260 (376)
Q Consensus 184 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l 260 (376)
.+..++..++ .|+.--.... .......+.-+|.+|.... ...+.++|..+.+..+ ..+|..... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~----~~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGI-GGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPGPISG----AP 72 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSC-SSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSSCGGS----GE
T ss_pred EEEEEECCCCCEEEEEECCCCC-CCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccccccc----ee
Confidence 5677888776 5886321100 0011124457888887643 4489999987765433 244444332 24
Q ss_pred EEecCeEEEEEecCCCCEEEEEEeCC--Cceee-EEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 261 GIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIK-QSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~-~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
...++.+++... ...+..+..++ ..|.. ...-++............++.+++....+.++.+|+++++..
T Consensus 73 ~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred eecccccccccc---eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 666777877764 23444444444 56884 433211121112222222455667777888999999998763
No 57
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.18 E-value=19 Score=33.46 Aligned_cols=124 Identities=12% Similarity=0.209 Sum_probs=75.7
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCce--Ee---eecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEK--FQ---EIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK- 286 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~---~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~- 286 (376)
+|...|+...+ ...|..|++..+. .. .+.+|..... ..++.. +|+ ++++... ...+.++.++.
T Consensus 154 dg~~v~v~dlG----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP---Rh~~f~pdg~~~Yv~~e~--s~~v~v~~~~~~ 224 (345)
T PF10282_consen 154 DGRFVYVPDLG----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGP---RHLAFSPDGKYAYVVNEL--SNTVSVFDYDPS 224 (345)
T ss_dssp TSSEEEEEETT----TTEEEEEEE-TTS-TEEEEEEEECSTTSSE---EEEEE-TTSSEEEEEETT--TTEEEEEEEETT
T ss_pred CCCEEEEEecC----CCEEEEEEEeCCCceEEEeeccccccCCCC---cEEEEcCCcCEEEEecCC--CCcEEEEeeccc
Confidence 47766676555 4578888877655 43 3466766554 455544 555 6666654 88999999983
Q ss_pred -CceeeEEEECCCCc------eeeeEEEeeCCcEE-EEE-cCCeEEEEeC--CCCcEEEEEEe---cceEEEEEe
Q 048178 287 -KNWIKQSSVGPFIG------IFQPLLFWKKGAFF-VES-NSSQLLLYEP--GTGELRDFELE---CCWFSIYIY 347 (376)
Q Consensus 287 -~~W~~~~~i~~~~~------~~~~~~~~~~g~i~-~~~-~~~~~~~yd~--~t~~~~~v~~~---~~~~~~~~y 347 (376)
+.+..+.++..++. ...-+.+.++|+.+ +.. ..+.+.+|++ ++++++.++.. |..|+.+..
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 77888777742211 13335667788855 443 3566888887 56788887543 225555555
No 58
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.78 E-value=0.87 Score=28.19 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=19.5
Q ss_pred CCcceEEEEEcCCCceEeccccC
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSID 202 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~ 202 (376)
.....+++|+..+++|+.++.+|
T Consensus 25 ~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 25 QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SBEEEEEEEETTTTEEEEEEEES
T ss_pred ceeeeEEEEeCCCCEEEEcCCCC
Confidence 34679999999999999988664
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.39 E-value=24 Score=33.66 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=92.0
Q ss_pred cceEEEEEcCCCceEe-ccccCccccCCCCe--EEECceEEEEeeecCCCCccEEEEEECCCceE-eee---cCCCCCCC
Q 048178 182 FSLVTVYNLSTNSWRN-LKSIDYTMRLSSER--TYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEI---QGPCTLES 254 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~--v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i---~lP~~~~~ 254 (376)
..++++|++.+.+=+. +.. +....++ +..+|.+...+.. ...+-.||.++... +.+ ..|..
T Consensus 47 S~rvqly~~~~~~~~k~~sr----Fk~~v~s~~fR~DG~LlaaGD~-----sG~V~vfD~k~r~iLR~~~ah~apv~--- 114 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSR----FKDVVYSVDFRSDGRLLAAGDE-----SGHVKVFDMKSRVILRQLYAHQAPVH--- 114 (487)
T ss_pred ccEEEEEecchhhhhhhHHh----hccceeEEEeecCCeEEEccCC-----cCcEEEeccccHHHHHHHhhccCcee---
Confidence 6799999999864322 221 1111233 3446999876654 34789999665221 111 11111
Q ss_pred CCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEEE-cCCeEEEEeCCCCcE
Q 048178 255 SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEPGTGEL 332 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~-~~~~~~~yd~~t~~~ 332 (376)
.......++.+++.+.+ +..+.+|.+.... + ...+.-...+.+..++.+ ++-|++.+ +++.+-.||.++..-
T Consensus 115 --~~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 115 --VTKFSPQDNTMLVSGSD--DKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred --EEEecccCCeEEEecCC--CceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 12333345556666555 8999999999843 3 444533444555555555 44477774 588899999999985
Q ss_pred EEEEEecc-eEEEEEeec--CccccCCCC
Q 048178 333 RDFELECC-WFSIYIYTE--SLITLKGGE 358 (376)
Q Consensus 333 ~~v~~~~~-~~~~~~y~~--sLv~~~~~~ 358 (376)
+.+.+++. --..+.|.| |++-..+++
T Consensus 189 ~v~elnhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 189 RVVELNHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred eeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence 55567655 223334444 455444444
No 60
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=87.56 E-value=2 Score=26.93 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=25.8
Q ss_pred CceEEEEeeec--CCCCccEEEEEECCCceEeee-cCCCCCC
Q 048178 215 DGAFYWLLKLE--NDNDNYVILSFHMAEEKFQEI-QGPCTLE 253 (376)
Q Consensus 215 ~G~lywl~~~~--~~~~~~~i~~fD~~~e~~~~i-~lP~~~~ 253 (376)
++.+|.+++.. .......+.+||+.+.+|+.+ .+|+...
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCcc
Confidence 35666666554 122245689999999999998 5555443
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.55 E-value=26 Score=33.15 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=97.7
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
..+|.|.+......++.+|+.|++.+.--..+..... ...+. + . +|+.. ...-.+.
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~s-------sP~v~-~----~-~v~v~-----------~~~g~l~ 173 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALS-------RPVVS-D----G-LVLVH-----------TSNGMLQ 173 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCCCceec-------CCEEE-C----C-EEEEE-----------CCCCEEE
Confidence 3467777776677889999999884331111111000 00111 1 1 22221 1134677
Q ss_pred EEEcCCC--ceEeccccCc-cccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eee-ecCCCCCCC-----C
Q 048178 187 VYNLSTN--SWRNLKSIDY-TMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQE-IQGPCTLES-----S 255 (376)
Q Consensus 187 vyss~t~--~W~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~-i~lP~~~~~-----~ 255 (376)
.++.+++ .|+.-...+. .......++..+|.+|+-..++ .+.++|.++.+ |+. +..|..... .
T Consensus 174 ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 174 ALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred EEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC------EEEEEEccCChhhheeccccCCCccchhcccc
Confidence 7888776 4886432221 1112235667788888755433 78999988754 542 222322110 0
Q ss_pred CceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcE
Q 048178 256 LDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~ 332 (376)
....-++.+|.+++... ...+....++. ..|..... .. ..+ . ..++.||+...+++++.+|.++++.
T Consensus 248 ~~~sP~v~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~--~~---~~~-~-~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 248 VDTTPVVVGGVVYALAY---NGNLVALDLRSGQIVWKREYG--SV---NDF-A-VDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred cCCCcEEECCEEEEEEc---CCeEEEEECCCCCEEEeecCC--Cc---cCc-E-EECCEEEEEcCCCeEEEEECCCCcE
Confidence 01223345777776654 23333333333 44765321 11 122 2 3367788888888999999998853
No 62
>PLN02772 guanylate kinase
Probab=87.04 E-value=4.2 Score=38.24 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeee----cCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEE
Q 048178 209 SERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI----QGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIW 282 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i----~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW 282 (376)
..++.+++++|.+++..+.. ....+.+||..+.+|..- ..|..... ...+++ +++|.++.- .....-+||
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G---hSa~v~~~~rilv~~~-~~~~~~~~w 103 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG---YSAVVLNKDRILVIKK-GSAPDDSIW 103 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc---ceEEEECCceEEEEeC-CCCCccceE
Confidence 46899999999998755432 356899999999999764 23433332 234444 677888886 345668999
Q ss_pred EeCC
Q 048178 283 VMQK 286 (376)
Q Consensus 283 ~l~~ 286 (376)
.|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 9875
No 63
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=85.98 E-value=6.2 Score=30.79 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=49.3
Q ss_pred EEEEEECCCc--eEeeecCCCCCCCC-----------CceeEEEecCeEEEEEec--------CCCCEEEEEEeCC----
Q 048178 232 VILSFHMAEE--KFQEIQGPCTLESS-----------LDVTLGIYDQSLSLLLLD--------TVDHCFKIWVMQK---- 286 (376)
Q Consensus 232 ~i~~fD~~~e--~~~~i~lP~~~~~~-----------~~~~l~~~~g~L~l~~~~--------~~~~~l~vW~l~~---- 286 (376)
.|+..|+-.+ .++.|+||...... ....+++.+|+|-++... .....+.+|.|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888887755 66778888765321 225688899998888872 1356899999876
Q ss_pred -CceeeEEEECCCCc
Q 048178 287 -KNWIKQSSVGPFIG 300 (376)
Q Consensus 287 -~~W~~~~~i~~~~~ 300 (376)
.+|.+.+++ ....
T Consensus 87 ~~~W~~d~~v-~~~d 100 (131)
T PF07762_consen 87 SWEWKKDCEV-DLSD 100 (131)
T ss_pred CCCEEEeEEE-Ehhh
Confidence 779999988 4543
No 64
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.29 E-value=17 Score=33.43 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=69.1
Q ss_pred CeEEEC--ceEEEEeeecCCCCccEEEEEECCCceEeee---cCCCCC--CCCCc---eeEEEe---cCeEEEEEec---
Q 048178 210 ERTYFD--GAFYWLLKLENDNDNYVILSFHMAEEKFQEI---QGPCTL--ESSLD---VTLGIY---DQSLSLLLLD--- 273 (376)
Q Consensus 210 ~~v~~~--G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~lP~~~--~~~~~---~~l~~~---~g~L~l~~~~--- 273 (376)
.+++.+ |.+||+...+ .|...|++.+.-... .+-... ...+. .++..+ .|+||++...
T Consensus 188 ~~~~~~~~~~~~F~Sy~G------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTTTEEEEEBTTS------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCCCeEEEEecCC------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 345443 5788888765 899999987764333 221111 11121 344443 5568876652
Q ss_pred --CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-E-cCCeEEEEeCCCCcEE
Q 048178 274 --TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-S-NSSQLLLYEPGTGELR 333 (376)
Q Consensus 274 --~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~-~~~~~~~yd~~t~~~~ 333 (376)
.....-+||+++-..=.++.++ +++.-...+++..+.+ +++. . .++.+.+||..|++..
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CCccCCceEEEEEECCCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 2345789999998666677788 6653344567777666 5543 3 4577999999998654
No 65
>smart00612 Kelch Kelch domain.
Probab=85.05 E-value=1.2 Score=27.12 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=18.5
Q ss_pred cceEEEEEcCCCceEeccccCc
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDY 203 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~ 203 (376)
...+++|+.++++|+.++.++.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCC
Confidence 4678999999999999886654
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.17 E-value=0.38 Score=44.80 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChH
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPN 44 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~ 44 (376)
.-.||.+++..||+-|..+++.|++.+||.|+.+..+..
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 467999999999999999999999999999998876543
No 67
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.53 E-value=37 Score=31.33 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=76.8
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEe-ee---cCCCCccEEEEEECCCceEeee-cCCCCCCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLL-KL---ENDNDNYVILSFHMAEEKFQEI-QGPCTLESSL 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~-~~---~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~ 256 (376)
...+-+|+..++.|+.....|. .+...+++...|..-++. .. +.........-|.-...+|..+ ++|+......
T Consensus 195 n~ev~sy~p~~n~W~~~G~~pf-~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~ 273 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGENPF-YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNK 273 (381)
T ss_pred cccccccccccchhhhcCcCcc-cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCc
Confidence 4578889999999999885543 222223444444433332 21 1111234455666678899887 7777665532
Q ss_pred cee----EEEecCeEEEEEe-c-------------------CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc
Q 048178 257 DVT----LGIYDQSLSLLLL-D-------------------TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA 312 (376)
Q Consensus 257 ~~~----l~~~~g~L~l~~~-~-------------------~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~ 312 (376)
... -+..+|.+-+... . ...-+-+||.+++++|..+..+ |.. +..-+.+.-++.
T Consensus 274 eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeL-p~~-l~YG~s~~~nn~ 351 (381)
T COG3055 274 EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGEL-PQG-LAYGVSLSYNNK 351 (381)
T ss_pred cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeeccc-CCC-ccceEEEecCCc
Confidence 222 2334444444443 1 1122568999999999999998 764 333344444666
Q ss_pred EEEEE
Q 048178 313 FFVES 317 (376)
Q Consensus 313 i~~~~ 317 (376)
+++..
T Consensus 352 vl~IG 356 (381)
T COG3055 352 VLLIG 356 (381)
T ss_pred EEEEc
Confidence 77664
No 68
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=83.31 E-value=25 Score=30.68 Aligned_cols=121 Identities=13% Similarity=0.241 Sum_probs=74.6
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCC---------CceeEEEecCeEEEEEe-cCCC
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESS---------LDVTLGIYDQSLSLLLL-DTVD 276 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~---------~~~~l~~~~g~L~l~~~-~~~~ 276 (376)
....|+.||++|+-... ...|+-||++++.- ....+|...... ...-+++-+..|.++.. ....
T Consensus 70 gTg~VVynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~ 144 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA 144 (249)
T ss_pred ccceEEEcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC
Confidence 34589999999987754 34799999999654 444666554332 22567777777888877 3345
Q ss_pred CEEEEEEeCC------CceeeEEEECCCCceeeeEEEeeCCcEEEEEc----CCeE-EEEeCCCCcEEEEEEe
Q 048178 277 HCFKIWVMQK------KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN----SSQL-LLYEPGTGELRDFELE 338 (376)
Q Consensus 277 ~~l~vW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~----~~~~-~~yd~~t~~~~~v~~~ 338 (376)
..+.|-.|+. ..|.--..=.... =+|.-.|.++.... +..+ ++||..+++-+.+.+.
T Consensus 145 g~iv~skLdp~tl~~e~tW~T~~~k~~~~-----~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 145 GTIVLSKLDPETLEVERTWNTTLPKRSAG-----NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred CcEEeeccCHHHhheeeeeccccCCCCcC-----ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 6666777776 4563322110111 13333466665532 2223 7999999988777653
No 69
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.17 E-value=46 Score=31.45 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=60.9
Q ss_pred CCeEEECceEEEEeeecCCCCccEEEEEECCCc--eEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC
Q 048178 209 SERTYFDGAFYWLLKLENDNDNYVILSFHMAEE--KFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK 286 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e--~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~ 286 (376)
..++..+|.+|.....+ .+.++|.++. .|+. +++.. ..++..+|.+++... ...+.....++
T Consensus 250 ~sP~v~~~~vy~~~~~g------~l~ald~~tG~~~W~~-~~~~~------~~~~~~~~~vy~~~~---~g~l~ald~~t 313 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG------NLVALDLRSGQIVWKR-EYGSV------NDFAVDGGRIYLVDQ---NDRVYALDTRG 313 (394)
T ss_pred CCcEEECCEEEEEEcCC------eEEEEECCCCCEEEee-cCCCc------cCcEEECCEEEEEcC---CCeEEEEECCC
Confidence 35678899999866543 7999999875 4543 22111 123455666766654 23333333333
Q ss_pred --CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 287 --KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 287 --~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
..|.... + .......|+. .+|.|++...++.++.+|.++++..
T Consensus 314 G~~~W~~~~-~-~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 314 GVELWSQSD-L-LHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred CcEEEcccc-c-CCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3464321 1 1111233432 3678888888888999999998754
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=81.40 E-value=47 Score=31.05 Aligned_cols=134 Identities=10% Similarity=0.141 Sum_probs=72.3
Q ss_pred ceEEEEEcCCC--ceEeccccCc-cccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eee-ecCCCCCCC--
Q 048178 183 SLVTVYNLSTN--SWRNLKSIDY-TMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQE-IQGPCTLES-- 254 (376)
Q Consensus 183 ~~~~vyss~t~--~W~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~-i~lP~~~~~-- 254 (376)
-.+..++.+++ .|+.-...+. .......++..+|.+|.-... ..+.++|.++++ |+. +..|.....
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAG------GKLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCC------CEEEEEEccCCCEeeeeccccCCCCCchh
Confidence 45677777766 5875432221 111223467778877654332 379999987754 532 222322110
Q ss_pred ---CCceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCC
Q 048178 255 ---SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 255 ---~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t 329 (376)
.........+|.+++... ...+..+.++. ..|... . .....|. ..++.||+...++.++.+|.++
T Consensus 229 ~~~~~~~~p~~~~~~vy~~~~---~g~l~a~d~~tG~~~W~~~--~---~~~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 229 RLVDVDGDPVVDGGQVYAVSY---QGRVAALDLRSGRVLWKRD--A---SSYQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred hhhccCCccEEECCEEEEEEc---CCEEEEEECCCCcEEEeec--c---CCccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 001123344666666554 34566666655 446554 1 1112232 2367788877788899999988
Q ss_pred CcE
Q 048178 330 GEL 332 (376)
Q Consensus 330 ~~~ 332 (376)
++.
T Consensus 299 G~~ 301 (377)
T TIGR03300 299 GSE 301 (377)
T ss_pred CcE
Confidence 753
No 71
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=81.28 E-value=2.7 Score=26.27 Aligned_cols=21 Identities=24% Similarity=0.637 Sum_probs=13.7
Q ss_pred cceEEEEEcCCCceEeccccC
Q 048178 182 FSLVTVYNLSTNSWRNLKSID 202 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~ 202 (376)
...+.+|+..+++|+.++.+|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 568899999999999996554
No 72
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=80.23 E-value=50 Score=30.66 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=58.0
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEec--CCCC------EEEEEEeC------C--C--ceeeEE
Q 048178 232 VILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLD--TVDH------CFKIWVMQ------K--K--NWIKQS 293 (376)
Q Consensus 232 ~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~--~~~~------~l~vW~l~------~--~--~W~~~~ 293 (376)
..+.||.++...... |.-.........+..+|+||++... .... .+++-... . . +|..+-
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP 164 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP 164 (342)
T ss_pred CeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCC
Confidence 588999998877744 4322221223444558889998882 1111 56665433 1 3 454432
Q ss_pred EECCCCce-------eeeEEEeeCCc-EEEEEcCC--eEEEEeCCCCcEEEEE
Q 048178 294 SVGPFIGI-------FQPLLFWKKGA-FFVESNSS--QLLLYEPGTGELRDFE 336 (376)
Q Consensus 294 ~i~~~~~~-------~~~~~~~~~g~-i~~~~~~~--~~~~yd~~t~~~~~v~ 336 (376)
.- |+... ....++. +|. |++..... ..+.||.++.+|++++
T Consensus 165 ~P-Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 165 PP-PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred CC-CccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 21 22211 2223334 454 77766644 6999999999999984
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=79.85 E-value=40 Score=29.30 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=66.7
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
+|.+||.... ...|..+|..+.+...+.+|.. ..++.. +|+|++... ..+.+..++.+++..+
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~~~~------~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDLPGP------NGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEESSSE------EEEEEECTTSEEEEEET----TCEEEEETTTTEEEEE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEecCCC------ceEEEEccCCEEEEEEc----CceEEEecCCCcEEEE
Confidence 6999999765 3489999999999988887762 233333 556665553 2234444455788888
Q ss_pred EEECCCC--ceeee--EEEeeCCcEEEEEcC---------CeEEEEeCCCCcEEEE
Q 048178 293 SSVGPFI--GIFQP--LLFWKKGAFFVESNS---------SQLLLYEPGTGELRDF 335 (376)
Q Consensus 293 ~~i~~~~--~~~~~--~~~~~~g~i~~~~~~---------~~~~~yd~~t~~~~~v 335 (376)
... +.. ....| +++.++|.+++.... ++++.++++ ++.+.+
T Consensus 76 ~~~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 76 ADL-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEE-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred eec-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 776 211 12333 566678888887431 468999999 666555
No 74
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=79.85 E-value=6 Score=29.56 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=29.2
Q ss_pred CeEEEEecCcc-ceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEE
Q 048178 119 NRITLWNIATR-ESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLIL 169 (376)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 169 (376)
..++++||.|+ .|. |..+.. ..+.+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~~~---------~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASKHA---------VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeE--eCCCCc---------eeEEEEecCCCcEEEEEEec
Confidence 35799999986 784 444311 14678899999999999863
No 75
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=79.62 E-value=3.9 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.8
Q ss_pred CCcceEEEEEcCCCceEecccc
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSI 201 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~ 201 (376)
.....+++|+.++++|+.++.+
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cccceeEEEECCCCEEeecCCC
Confidence 4567999999999999998754
No 76
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=78.84 E-value=52 Score=30.04 Aligned_cols=135 Identities=12% Similarity=0.145 Sum_probs=70.4
Q ss_pred cceEEEEEcCC-CceEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECC-CceEeee-cCCCCCCCC
Q 048178 182 FSLVTVYNLST-NSWRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMA-EEKFQEI-QGPCTLESS 255 (376)
Q Consensus 182 ~~~~~vyss~t-~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~-~e~~~~i-~lP~~~~~~ 255 (376)
...+.+|+..+ +.++.+...+.. .....+.+ +|. +|.... . ...|.+|++. +..+..+ ..|....
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~~~~~-- 81 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALTFAAESPLPGS-- 81 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceEEeeeecCCCC--
Confidence 45678888764 567766543211 11123333 565 454333 2 3478888876 4556544 2222111
Q ss_pred CceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-Cc-eeeEEEECCCCceeeeEEEeeCCcEE-EEE-cCCeEEEEeCCC
Q 048178 256 LDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK-KN-WIKQSSVGPFIGIFQPLLFWKKGAFF-VES-NSSQLLLYEPGT 329 (376)
Q Consensus 256 ~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~-W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~-~~~~~~~yd~~t 329 (376)
...++.. +|+ |++.... ...+.+|.+++ +. ...+..+ +...-..-+++.++|+.+ +.. ..+.+.+||+++
T Consensus 82 -p~~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 82 -PTHISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred -ceEEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 1234443 565 5555543 78899999975 22 2233333 211112224556677754 443 357799999876
No 77
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.82 E-value=57 Score=30.47 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=89.9
Q ss_pred ecceEEEeecCCeEEEEecCccceee---cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVT---LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
.+|.+.+......++.+|+.|++.+. ++.... .....+ +. +|+.. ...-.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~------------~~p~v~---~~-~v~v~-----------~~~g~ 116 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLS------------GGVGAD---GG-LVFVG-----------TEKGE 116 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc------------cceEEc---CC-EEEEE-----------cCCCE
Confidence 36777777666678889999988543 232100 001111 11 11111 11335
Q ss_pred EEEEEcCCC--ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eeee-cCCCCCCCCCcee
Q 048178 185 VTVYNLSTN--SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQEI-QGPCTLESSLDVT 259 (376)
Q Consensus 185 ~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~i-~lP~~~~~~~~~~ 259 (376)
+..++..++ .|+.-..- .....++..+|.+|..... ..+.++|.++.+ |+.- ..|.. .......
T Consensus 117 l~ald~~tG~~~W~~~~~~----~~~~~p~v~~~~v~v~~~~------g~l~a~d~~tG~~~W~~~~~~~~~-~~~~~~s 185 (377)
T TIGR03300 117 VIALDAEDGKELWRAKLSS----EVLSPPLVANGLVVVRTND------GRLTALDAATGERLWTYSRVTPAL-TLRGSAS 185 (377)
T ss_pred EEEEECCCCcEeeeeccCc----eeecCCEEECCEEEEECCC------CeEEEEEcCCCceeeEEccCCCce-eecCCCC
Confidence 666776665 58753211 1122356678888875443 379999987654 5432 22211 0000112
Q ss_pred EEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCC--------c-eeeeEEEeeCCcEEEEEcCCeEEEEeCC
Q 048178 260 LGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFI--------G-IFQPLLFWKKGAFFVESNSSQLLLYEPG 328 (376)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~--------~-~~~~~~~~~~g~i~~~~~~~~~~~yd~~ 328 (376)
.+..+|.++ +... ...+....++. ..|...... +.. . ...|+. .++.+++....+.++.||++
T Consensus 186 p~~~~~~v~-~~~~--~g~v~ald~~tG~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 186 PVIADGGVL-VGFA--GGKLVALDLQTGQPLWEQRVAL-PKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred CEEECCEEE-EECC--CCEEEEEEccCCCEeeeecccc-CCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECC
Confidence 233344333 2221 23443333333 446543221 110 0 122322 35678887778889999999
Q ss_pred CCcEE
Q 048178 329 TGELR 333 (376)
Q Consensus 329 t~~~~ 333 (376)
+++..
T Consensus 260 tG~~~ 264 (377)
T TIGR03300 260 SGRVL 264 (377)
T ss_pred CCcEE
Confidence 88644
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=78.15 E-value=49 Score=29.36 Aligned_cols=140 Identities=12% Similarity=0.135 Sum_probs=74.9
Q ss_pred CcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCc-eEeeecCCCCCCCCCcee
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEE-KFQEIQGPCTLESSLDVT 259 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e-~~~~i~lP~~~~~~~~~~ 259 (376)
....+..|++.|++=.....+|... .....+.+++.+|-++... ...+.||.++- .-..++.|.. . --
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~-FgEGit~~~d~l~qLTWk~-----~~~f~yd~~tl~~~~~~~y~~E--G---WG 134 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRY-FGEGITILGDKLYQLTWKE-----GTGFVYDPNTLKKIGTFPYPGE--G---WG 134 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSS-----SEEEEEETTTTEEEEEEE-SSS-------E
T ss_pred CcEEEEEEECCCCcEEEEEECCccc-cceeEEEECCEEEEEEecC-----CeEEEEccccceEEEEEecCCc--c---eE
Confidence 3678899999998644333333222 2234568899999999874 48899999863 3344455521 1 23
Q ss_pred EEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe-----eCCcEEEEE-cCCeEEEEeCCCCcEE
Q 048178 260 LGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW-----KKGAFFVES-NSSQLLLYEPGTGELR 333 (376)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~-----~~g~i~~~~-~~~~~~~yd~~t~~~~ 333 (376)
|+.-+..|.+... +. .++.++......+.+| ....-..|+... -+|.|+--- ....++..|++|+++.
T Consensus 135 Lt~dg~~Li~SDG---S~--~L~~~dP~~f~~~~~i-~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 135 LTSDGKRLIMSDG---SS--RLYFLDPETFKEVRTI-QVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp EEECSSCEEEE-S---SS--EEEEE-TTT-SEEEEE-E-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEE
T ss_pred EEcCCCEEEEECC---cc--ceEEECCcccceEEEE-EEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 4433333554443 33 3444444345555555 232222333221 178887653 4677999999999877
Q ss_pred E-EEE
Q 048178 334 D-FEL 337 (376)
Q Consensus 334 ~-v~~ 337 (376)
. +.+
T Consensus 209 ~~iDl 213 (264)
T PF05096_consen 209 GWIDL 213 (264)
T ss_dssp EEEE-
T ss_pred EEEEh
Confidence 5 444
No 79
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.21 E-value=11 Score=34.70 Aligned_cols=87 Identities=9% Similarity=0.135 Sum_probs=58.0
Q ss_pred ceEEEEEcCC--CceEeccccCccccCCCCeEEECceEEEEeeecCCC-----CccEEEEEECCCceEeee--cCCCCCC
Q 048178 183 SLVTVYNLST--NSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN-----DNYVILSFHMAEEKFQEI--QGPCTLE 253 (376)
Q Consensus 183 ~~~~vyss~t--~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~i~~fD~~~e~~~~i--~lP~~~~ 253 (376)
..+.+.+++. ..|+.++..|.........+.++|.||.+...+... -...+..||..+++|+.+ ..|....
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~ 137 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV 137 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc
Confidence 3444445543 479999987655544555789999999998776443 134588999999999987 4565543
Q ss_pred CCCceeEEEecC-eEEEEEe
Q 048178 254 SSLDVTLGIYDQ-SLSLLLL 272 (376)
Q Consensus 254 ~~~~~~l~~~~g-~L~l~~~ 272 (376)
. ..-..+++ .+++...
T Consensus 138 G---~~~~~~~~~~i~f~GG 154 (381)
T COG3055 138 G---ASTFSLNGTKIYFFGG 154 (381)
T ss_pred c---ceeEecCCceEEEEcc
Confidence 3 34445555 4666555
No 80
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=74.95 E-value=84 Score=30.46 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=36.3
Q ss_pred CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEEEe
Q 048178 274 TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 274 ~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~~~ 338 (376)
..+.++.+|.-..-+|+++..= |.. .+++...|.+.+-...+..++.|.+++.+-.+.-.
T Consensus 387 gqdk~v~lW~~~k~~wt~~~~d-~~~----~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d 446 (626)
T KOG2106|consen 387 GQDKHVRLWNDHKLEWTKIIED-PAE----CADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD 446 (626)
T ss_pred cCcceEEEccCCceeEEEEecC-cee----EeeccCcceEEEeeccceEEEEecccceeEEEEec
Confidence 3467888898222779887643 433 24555555344445567777777777666555443
No 81
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=74.38 E-value=72 Score=29.36 Aligned_cols=116 Identities=10% Similarity=0.187 Sum_probs=71.0
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeee---cCCCCCCCCCceeEEE-ecCeEEEEEecCCCCEEEEEEeCC--Cc
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI---QGPCTLESSLDVTLGI-YDQSLSLLLLDTVDHCFKIWVMQK--KN 288 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~lP~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~l~vW~l~~--~~ 288 (376)
+|.+-|...-+ ...|..||++....... .+++..+. +.++= -+|+++.+.. .-..++.||..+. ++
T Consensus 155 ~~~~l~v~DLG----~Dri~~y~~~dg~L~~~~~~~v~~G~GP---RHi~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 155 DGRYLVVPDLG----TDRIFLYDLDDGKLTPADPAEVKPGAGP---RHIVFHPNGKYAYLVN-ELNSTVDVLEYNPAVGK 226 (346)
T ss_pred CCCEEEEeecC----CceEEEEEcccCccccccccccCCCCCc---ceEEEcCCCcEEEEEe-ccCCEEEEEEEcCCCce
Confidence 45555555444 55788888876655443 44555443 33333 3777555544 3378999999998 77
Q ss_pred eeeEEEECCCCc-e-----eeeEEEeeCCcEEEEE-cC-C--eEEEEeCCCCcEEEEEEe
Q 048178 289 WIKQSSVGPFIG-I-----FQPLLFWKKGAFFVES-NS-S--QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 289 W~~~~~i~~~~~-~-----~~~~~~~~~g~i~~~~-~~-~--~~~~yd~~t~~~~~v~~~ 338 (376)
-..+.++..++. + ..-+.+..+|+++... +. . .+|.-|..+++++-+...
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 777777643332 2 3334556688866553 32 2 367778888888888664
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=74.07 E-value=83 Score=29.98 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=42.1
Q ss_pred CceeEEEecCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEE
Q 048178 256 LDVTLGIYDQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVE 316 (376)
Q Consensus 256 ~~~~l~~~~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~ 316 (376)
+...|+++.|+ |+..+.. ...+.+|..++ ..=..++.+ |+..+.--+++..+|+.++.
T Consensus 382 Witsla~i~~sdL~asGS~--~G~vrLW~i~~g~r~i~~l~~l-s~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSW--SGCVRLWKIEDGLRAINLLYSL-SLVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred ceeeeEecccCceEEecCC--CCceEEEEecCCccccceeeec-ccccEEEEEEEccCCCEEEE
Confidence 44678888887 6666655 78999999998 345666777 67666667777778884444
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=73.07 E-value=87 Score=29.74 Aligned_cols=123 Identities=17% Similarity=0.295 Sum_probs=72.7
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCC-ceEeeecCCCCCCCCCceeE
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAE-EKFQEIQGPCTLESSLDVTL 260 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~-e~~~~i~lP~~~~~~~~~~l 260 (376)
...+.||++.+.. .+..+|.+. .....+.+...=||++...+ ...+..+|++. +.+..+++|.... ..-
T Consensus 368 d~~vkiwdlks~~--~~a~Fpght-~~vk~i~FsENGY~Lat~ad---d~~V~lwDLRKl~n~kt~~l~~~~~----v~s 437 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPGHT-GPVKAISFSENGYWLATAAD---DGSVKLWDLRKLKNFKTIQLDEKKE----VNS 437 (506)
T ss_pred CceEEEEEcCCcc--ccccCCCCC-CceeEEEeccCceEEEEEec---CCeEEEEEehhhcccceeecccccc----cee
Confidence 4567777777665 444444322 22346777777899887654 33699999986 4566777776532 222
Q ss_pred EEecCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCC-ceeeeEEEeeCCcEEEEEc
Q 048178 261 GIYDQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFI-GIFQPLLFWKKGAFFVESN 318 (376)
Q Consensus 261 ~~~~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~-~~~~~~~~~~~g~i~~~~~ 318 (376)
..++.+ -+|..+ +..+.|+..+. ++|.++... +.. ....-+.|.+....+....
T Consensus 438 ~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 438 LSFDQSGTYLGIA---GSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred EEEcCCCCeEEee---cceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeecc
Confidence 334433 222222 56778888776 889998776 332 1334455555555555443
No 84
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.78 E-value=13 Score=20.63 Aligned_cols=26 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred eCCcEEEEEcCCeEEEEeCCCCcEEE
Q 048178 309 KKGAFFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 309 ~~g~i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
.+|.+++...++.++.+|.++++...
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 35667777788999999999887543
No 85
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=72.36 E-value=68 Score=28.19 Aligned_cols=116 Identities=11% Similarity=0.131 Sum_probs=62.7
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceE-eeecC--CCCCCCC-CceeEEE-ecCeEEEEEecCCCCEEEEEEeCCCce
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQG--PCTLESS-LDVTLGI-YDQSLSLLLLDTVDHCFKIWVMQKKNW 289 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~l--P~~~~~~-~~~~l~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W 289 (376)
+|...++.... ...+..+|+++.+. ..+.. |...... ....+.. -+|+..++.. .....+.+|.+++ |
T Consensus 167 dg~~l~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~-~~~~~i~v~d~~~--~ 239 (300)
T TIGR03866 167 DGKELWVSSEI----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL-GPANRVAVVDAKT--Y 239 (300)
T ss_pred CCCEEEEEcCC----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-CCCCeEEEEECCC--C
Confidence 56554444332 23688899987654 33322 1111011 1112332 3555433333 2245688887754 6
Q ss_pred eeEEEECCCCceeeeEEEeeCCcEEEEE--cCCeEEEEeCCCCc-EEEEEEe
Q 048178 290 IKQSSVGPFIGIFQPLLFWKKGAFFVES--NSSQLLLYEPGTGE-LRDFELE 338 (376)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~g~i~~~~--~~~~~~~yd~~t~~-~~~v~~~ 338 (376)
..+..+ ........+++.++|+.++.. .++.+.+||+++.+ .+++.+.
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 240 EVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred cEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 665544 222223345667788866543 46789999999987 4667653
No 86
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=71.55 E-value=5.9 Score=24.75 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=18.7
Q ss_pred CeEEEEecCccceeecCCCCCCC
Q 048178 119 NRITLWNIATRESVTLPKYRAII 141 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~ 141 (376)
+.++++||.|++|.+++..|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 45799999999999997766543
No 87
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.11 E-value=9.1 Score=27.71 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEeeC-CcEEEEEc------------------CCeEEEEeCCCCcEEEE
Q 048178 305 LLFWKK-GAFFVESN------------------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 305 ~~~~~~-g~i~~~~~------------------~~~~~~yd~~t~~~~~v 335 (376)
+.+..+ |.|||... .++++.||++|++.+.+
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 345555 77888732 36799999999998876
No 88
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=69.10 E-value=1e+02 Score=28.84 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=73.1
Q ss_pred cceEEEEEcCCCceEec-cccCccccCCCC-eEEECceEEEEeeecCCCCccEEEEEECCCce--EeeecCCCCCCCCCc
Q 048178 182 FSLVTVYNLSTNSWRNL-KSIDYTMRLSSE-RTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQEIQGPCTLESSLD 257 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~-~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~i~lP~~~~~~~~ 257 (376)
...+......+..|... ...- ....... .+..+|.+|.....+ .|.++|.++.. |+.-..+ ......
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~~~-~~~~~~~~~~~~dg~v~~~~~~G------~i~A~d~~~g~~~W~~~~~~--~~~~~~ 104 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGSGG-GGIYAGPAPADGDGTVYVGTRDG------NIFALNPDTGLVKWSYPLLG--AVAQLS 104 (370)
T ss_pred ceEEEcccCcceeeeeecccCc-cceEeccccEeeCCeEEEecCCC------cEEEEeCCCCcEEecccCcC--cceecc
Confidence 34555555666778643 2111 1111222 589999999875443 79999999876 6444332 000011
Q ss_pred eeEEEecCeEEEEEecCCCCEEEEEEeCC----CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 258 VTLGIYDQSLSLLLLDTVDHCFKIWVMQK----KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 258 ~~l~~~~g~L~l~~~~~~~~~l~vW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
..+...+|++++-..+ . .++.++. ..|.....- . ..+..+ .+..++.+++...++.++..|.+|++..
T Consensus 105 ~~~~~~~G~i~~g~~~--g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 105 GPILGSDGKIYVGSWD--G---KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred CceEEeCCeEEEeccc--c---eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCcEE
Confidence 2333347886665553 2 6666665 345543321 1 101222 2223556666656788999999977654
No 89
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=67.07 E-value=88 Score=27.40 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=71.8
Q ss_pred ceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCe-EEEEEecCCCCEEEEEEeCCCceeeEEE
Q 048178 216 GAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSS 294 (376)
Q Consensus 216 G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~ 294 (376)
|.+...+++ ..+...|+++++++..---. . +...-++.+.. -=++.. .++.+++||.++..+=+ ..
T Consensus 127 nSi~~AgGD------~~~y~~dlE~G~i~r~~rGH--t--DYvH~vv~R~~~~qilsG-~EDGtvRvWd~kt~k~v--~~ 193 (325)
T KOG0649|consen 127 NSILFAGGD------GVIYQVDLEDGRIQREYRGH--T--DYVHSVVGRNANGQILSG-AEDGTVRVWDTKTQKHV--SM 193 (325)
T ss_pred CcEEEecCC------eEEEEEEecCCEEEEEEcCC--c--ceeeeeeecccCcceeec-CCCccEEEEecccccee--EE
Confidence 666665543 38999999999997662211 1 11122222111 112222 34889999999883222 22
Q ss_pred ECCCCc--e-----eeeEE-EeeCCcEEEEEcCCeEEEEeCCCCcEEE-EEEecceEEEEEeecCccccCCCCC
Q 048178 295 VGPFIG--I-----FQPLL-FWKKGAFFVESNSSQLLLYEPGTGELRD-FELECCWFSIYIYTESLITLKGGES 359 (376)
Q Consensus 295 i~~~~~--~-----~~~~~-~~~~g~i~~~~~~~~~~~yd~~t~~~~~-v~~~~~~~~~~~y~~sLv~~~~~~~ 359 (376)
|+|++. . ..-++ +..+.+-+++..+.++-.++++..+-.. +.|......+..|....+..+.++.
T Consensus 194 ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~ 267 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNH 267 (325)
T ss_pred eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccc
Confidence 333221 1 22233 3445667788777789999999886554 4666543344444444444444543
No 90
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.13 E-value=13 Score=21.81 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=18.9
Q ss_pred CcEEEEEcCCeEEEEeCCCCcEEE
Q 048178 311 GAFFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 311 g~i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
|.+++...++.++.+|.+|++...
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEE
Confidence 356777778899999999997654
No 91
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=65.52 E-value=96 Score=27.30 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=69.0
Q ss_pred ceEEE-EEcCCC-ceEeccccCccccCCCCeE--EECceEEEEeeecCCCCccEEEEEEC-CCceEeee---cCCCCCCC
Q 048178 183 SLVTV-YNLSTN-SWRNLKSIDYTMRLSSERT--YFDGAFYWLLKLENDNDNYVILSFHM-AEEKFQEI---QGPCTLES 254 (376)
Q Consensus 183 ~~~~v-yss~t~-~W~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~i~~fD~-~~e~~~~i---~lP~~~~~ 254 (376)
....+ ||...+ +|+...............+ .-+|.+|.+.... .. ....++.-. .-++|+.. .+|....
T Consensus 133 ~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~-~~~~~~~S~D~G~TWs~~~~~~~~~~~~- 209 (275)
T PF13088_consen 133 FSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN-DDIYISRSTDGGRTWSPPQPTNLPNPNS- 209 (275)
T ss_dssp EEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS-TEEEEEEESSTTSS-EEEEEEECSSCCE-
T ss_pred cceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC-CcEEEEEECCCCCcCCCceecccCcccC-
Confidence 44444 555544 6987764421111111222 2478999888763 11 223333333 34678754 4554432
Q ss_pred CCceeEEEe-cCeEEEEEec-CCCCEEEEEEeCC--CceeeEEEECCCC--ce-eeeEEEeeCCcEEE
Q 048178 255 SLDVTLGIY-DQSLSLLLLD-TVDHCFKIWVMQK--KNWIKQSSVGPFI--GI-FQPLLFWKKGAFFV 315 (376)
Q Consensus 255 ~~~~~l~~~-~g~L~l~~~~-~~~~~l~vW~l~~--~~W~~~~~i~~~~--~~-~~~~~~~~~g~i~~ 315 (376)
...+..+ +|.+.++... .....+.|+.-++ ..|.....|.+-. .. +.-+...++|+|.+
T Consensus 210 --~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 210 --SISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp --EEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred --CceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 2344554 5677777772 2467888888777 8899988884322 12 33344455777764
No 92
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=64.74 E-value=1.2e+02 Score=28.08 Aligned_cols=147 Identities=18% Similarity=0.279 Sum_probs=78.9
Q ss_pred cceEEEEEcCCCc--eEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECC--CceEeee----cCCC
Q 048178 182 FSLVTVYNLSTNS--WRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMA--EEKFQEI----QGPC 250 (376)
Q Consensus 182 ~~~~~vyss~t~~--W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~--~e~~~~i----~lP~ 250 (376)
.-.+.+|+...+. .................+.+ +|. +|.+... ...|.+|+.. +..++.+ .+|.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-----SNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-----CCcEEEEeecccCCceeEEEEeeeccc
Confidence 4578888887664 54432221001011112222 565 5554433 2356666655 6666654 3555
Q ss_pred CCCCC-CceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEECCC-CceeeeEEEeeCCcEEEE-E-cCCeE
Q 048178 251 TLESS-LDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPF-IGIFQPLLFWKKGAFFVE-S-NSSQL 322 (376)
Q Consensus 251 ~~~~~-~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~-~~~~~~~~~~~~g~i~~~-~-~~~~~ 322 (376)
..... ....+... +|+ |++.... ...+.++.++. +.-.++..+ +. ....+-+.+.++|+.++. . ..+.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTV 316 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeE
Confidence 43322 22345444 566 5555543 88999999955 566666666 43 222444666678886554 3 34566
Q ss_pred EEE--eCCCCcEEEEE
Q 048178 323 LLY--EPGTGELRDFE 336 (376)
Q Consensus 323 ~~y--d~~t~~~~~v~ 336 (376)
.+| |.++++++.+.
T Consensus 317 ~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 317 SVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCcEEEec
Confidence 666 66888998875
No 93
>PF13013 F-box-like_2: F-box-like domain
Probab=64.66 E-value=2.8 Score=31.59 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCCCCCHHHHHHHHhcCCccccceeeecch
Q 048178 5 GNDDSPEDIMIEILSRLPVKSLIRLRCVCK 34 (376)
Q Consensus 5 ~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK 34 (376)
...+||+||+..|+.....+.+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 456799999999999999888876666666
No 94
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=62.34 E-value=1.3e+02 Score=27.57 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=57.1
Q ss_pred ceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC-CceeeEEE
Q 048178 216 GAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSS 294 (376)
Q Consensus 216 G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~ 294 (376)
+.+||....+ ..|..+|.++..-+.+..|..... ..+..-+|.|..+.. .+.++..+. ..|.....
T Consensus 37 ~~L~w~DI~~-----~~i~r~~~~~g~~~~~~~p~~~~~---~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 37 GALLWVDILG-----GRIHRLDPETGKKRVFPSPGGFSS---GALIDAGGRLIACEH-----GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred CEEEEEeCCC-----CeEEEecCCcCceEEEECCCCccc---ceeecCCCeEEEEcc-----ccEEEeccCCceeEEecc
Confidence 5679987764 389999999988888888877643 222222333332222 112222232 44444433
Q ss_pred ECCCCceee--eEEEeeCCcEEEEEcC------------CeEEEEeCCCCcEEEE
Q 048178 295 VGPFIGIFQ--PLLFWKKGAFFVESNS------------SQLLLYEPGTGELRDF 335 (376)
Q Consensus 295 i~~~~~~~~--~~~~~~~g~i~~~~~~------------~~~~~yd~~t~~~~~v 335 (376)
..+-....+ -..+..+|.+++.... +.++.+|+.+...+.+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 321111111 1344557888886433 3588999854444433
No 95
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=62.21 E-value=1.6e+02 Score=29.66 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=59.8
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCc--eeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEEEEEEe-c
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIG--IFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRDFELE-C 339 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~--~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~~v~~~-~ 339 (376)
+.+++++.-+ ...+++-.++..+-.++..+.+... ...-+....+|+ |......+.+++||+++++.+.+-.. .
T Consensus 440 ~~k~~~~s~~--~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln 517 (691)
T KOG2048|consen 440 KNKLFLVSKN--IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN 517 (691)
T ss_pred CceEEEEecc--cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC
Confidence 3345554423 5566666666644444433322211 133355567888 44556677899999999998876421 1
Q ss_pred ceEEEE----EeecCccccCCCCCcccccce
Q 048178 340 CWFSIY----IYTESLITLKGGESVFDFDIP 366 (376)
Q Consensus 340 ~~~~~~----~y~~sLv~~~~~~~~~~~~~~ 366 (376)
..-.+. .=.++|+.....+.+++|+++
T Consensus 518 ~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 518 IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred cceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 211122 234678888999999999873
No 96
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=61.16 E-value=1.1e+02 Score=26.63 Aligned_cols=182 Identities=16% Similarity=0.099 Sum_probs=94.2
Q ss_pred ecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|=-|+..+ ...+-+|||..+..+.-=.. +.. .+.-++..+|.+. .... .....++
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-----hG~--EVlD~~~s~Dnsk-----------f~s~----GgDk~v~ 84 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-----HGH--EVLDAALSSDNSK-----------FASC----GGDKAVQ 84 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecC-----CCc--eeeeccccccccc-----------cccC----CCCceEE
Confidence 3555566544 56789999998876551111 111 0112344444331 1111 2356888
Q ss_pred EEEcCCC----ceEeccccCcccc-CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 187 VYNLSTN----SWRNLKSIDYTMR-LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 187 vyss~t~----~W~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
+++..|+ .|+....--.... ...++|.+.|.+ ...+-++|-.+..+..|+.=....+ ...-.
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-----------D~s~r~wDCRS~s~ePiQildea~D--~V~Si 151 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-----------DSSVRLWDCRSRSFEPIQILDEAKD--GVSSI 151 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccc-----------cceeEEEEcccCCCCccchhhhhcC--ceeEE
Confidence 9999887 4654432111111 122233333322 3478889998888887754333222 12334
Q ss_pred EecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCcee---eeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 262 IYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIF---QPLLFWKKGAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 262 ~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~---~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
.+.+...+.+.- +.++..+.+.. -++ ..+.+. ..+.+.++|...+. ..+..+-..|-+|+++-
T Consensus 152 ~v~~heIvaGS~--DGtvRtydiR~------G~l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 152 DVAEHEIVAGSV--DGTVRTYDIRK------GTL-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred EecccEEEeecc--CCcEEEEEeec------cee-ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 455665555553 56777776655 222 222222 23555667764443 44566777777776543
No 97
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=61.11 E-value=1.2e+02 Score=27.34 Aligned_cols=107 Identities=11% Similarity=0.213 Sum_probs=61.6
Q ss_pred CcceEEEEEcCCCceEeccccCcc----cc-CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecC-C-CCCC
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYT----MR-LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQG-P-CTLE 253 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~----~~-~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~l-P-~~~~ 253 (376)
.+..+.+|+..+.+|..+..-... +. ....-+++.|.+-.-.. ....+..||+++.+|..+.- . ....
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~-----~~~~la~yd~~~~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT-----NSSNLATYDFKNQTWSSLGGGSSNSIP 88 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC-----CceeEEEEecCCCeeeecCCcccccCC
Confidence 478999999999999987643111 11 22345666665553221 15689999999999987743 1 1111
Q ss_pred CCCc-eeEEEecCe-EEEEEe-cCCCCEEEEEEeCCCceeeEEE
Q 048178 254 SSLD-VTLGIYDQS-LSLLLL-DTVDHCFKIWVMQKKNWIKQSS 294 (376)
Q Consensus 254 ~~~~-~~l~~~~g~-L~l~~~-~~~~~~l~vW~l~~~~W~~~~~ 294 (376)
.... ......++. +.+.+. ......+.-| +..+|..+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 1000 112222443 666655 2233445555 6688998765
No 98
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=60.14 E-value=1.4e+02 Score=27.24 Aligned_cols=148 Identities=11% Similarity=0.145 Sum_probs=74.3
Q ss_pred cceEEEEEcCCC-ceEeccccCcccc--CCCCeE--EECceEEEEeeecCCCCccEEEEEECC--CceEeee----cCCC
Q 048178 182 FSLVTVYNLSTN-SWRNLKSIDYTMR--LSSERT--YFDGAFYWLLKLENDNDNYVILSFHMA--EEKFQEI----QGPC 250 (376)
Q Consensus 182 ~~~~~vyss~t~-~W~~~~~~~~~~~--~~~~~v--~~~G~lywl~~~~~~~~~~~i~~fD~~--~e~~~~i----~lP~ 250 (376)
...+.||+..++ .-..........+ .....+ .=+|...++.... ...|.+||+. ++++..+ ..|.
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~----~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL----NSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC----CCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 457899998763 2221110000011 111222 2355555555443 3467777775 3444333 2344
Q ss_pred CCCCC-CceeEEE-ecCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEE-Ec-CCeEE
Q 048178 251 TLESS-LDVTLGI-YDQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SN-SSQLL 323 (376)
Q Consensus 251 ~~~~~-~~~~l~~-~~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~-~~~~~ 323 (376)
..... ....+.. -+|+ |++.. .....+.||.++. ..+..+..+ +......-+.+.++|+.++. .. .+.+.
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~--~~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACD--RTASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEec--CCCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEccCCcEE
Confidence 32211 1112222 2555 55543 3367899999866 567666666 33222233566678875554 33 45566
Q ss_pred EEe--CCCCcEEEEE
Q 048178 324 LYE--PGTGELRDFE 336 (376)
Q Consensus 324 ~yd--~~t~~~~~v~ 336 (376)
+|+ .+++.++.++
T Consensus 300 v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 300 VYEIDGETGLLTELG 314 (330)
T ss_pred EEEEcCCCCcEEEcc
Confidence 664 5677777764
No 99
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=59.65 E-value=26 Score=33.66 Aligned_cols=55 Identities=20% Similarity=0.411 Sum_probs=38.0
Q ss_pred CCEEEEEEeCC----CceeeEEEECCCCce--------------------------------------eeeEEEeeCCcE
Q 048178 276 DHCFKIWVMQK----KNWIKQSSVGPFIGI--------------------------------------FQPLLFWKKGAF 313 (376)
Q Consensus 276 ~~~l~vW~l~~----~~W~~~~~i~~~~~~--------------------------------------~~~~~~~~~g~i 313 (376)
...+.+|.... ..|.+.+.- |..++ ..-+++.++|-+
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsA-P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSA-PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccC-CcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceE
Confidence 78889998887 678887766 54331 334566667777
Q ss_pred EEEEc-CCeEEEEeCCCCc
Q 048178 314 FVESN-SSQLLLYEPGTGE 331 (376)
Q Consensus 314 ~~~~~-~~~~~~yd~~t~~ 331 (376)
++.+. .++++.||++..+
T Consensus 265 L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred EEeecCCceEEEEecccCC
Confidence 76654 5678888888764
No 100
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=59.32 E-value=1.8e+02 Score=28.51 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=84.3
Q ss_pred cceEEEeec-----------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCC
Q 048178 109 CGIVFIEGL-----------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD 177 (376)
Q Consensus 109 ~Gll~~~~~-----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 177 (376)
.||||+... ...+++.+-- +.-..+|.....+ .....+.+++..|-||.-.+
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GP---------Vhdv~W~~s~~EF~VvyGfM------- 292 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGP---------VHDVTWSPSGREFAVVYGFM------- 292 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCC---------ceEEEECCCCCEEEEEEecc-------
Confidence 478877732 2356666655 5566666554332 12455677777888877543
Q ss_pred CCCCcceEEEEEcCCCceEeccccCccccCCCCeEEEC--ceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCC
Q 048178 178 SSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFD--GAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESS 255 (376)
Q Consensus 178 ~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~ 255 (376)
...+.||+++.+-=-.++. ..+..++.| |.+-.+++-++- +..|..+|+.+ ...|.-+...
T Consensus 293 ----PAkvtifnlr~~~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL--~G~mEvwDv~n--~K~i~~~~a~--- 355 (566)
T KOG2315|consen 293 ----PAKVTIFNLRGKPVFDFPE------GPRNTAFFNPHGNIILLAGFGNL--PGDMEVWDVPN--RKLIAKFKAA--- 355 (566)
T ss_pred ----cceEEEEcCCCCEeEeCCC------CCccceEECCCCCEEEEeecCCC--CCceEEEeccc--hhhccccccC---
Confidence 7789999998873333221 223455554 677777776653 67899999988 3333222221
Q ss_pred CceeEEEe--cCeEEEEEe----cCCCCEEEEEEeCC
Q 048178 256 LDVTLGIY--DQSLSLLLL----DTVDHCFKIWVMQK 286 (376)
Q Consensus 256 ~~~~l~~~--~g~L~l~~~----~~~~~~l~vW~l~~ 286 (376)
...+.++ +|.-++... ...+..+.||--..
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 1355554 666444433 13467888997665
No 101
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=59.23 E-value=59 Score=31.27 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=48.6
Q ss_pred ceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCc-EEEEE
Q 048178 241 EKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVES 317 (376)
Q Consensus 241 e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~ 317 (376)
.+|..+ .|+..... -+..+++++.+.-+.+.. .++..+- +.=.++++ .+.. +.|.-+..+|+ |+|+
T Consensus 216 ~tFeK~vdl~~~vS~-----PmIV~~RvYFlsD~eG~G--nlYSvdldGkDlrrHT--nFtd-YY~R~~nsDGkrIvFq- 284 (668)
T COG4946 216 KTFEKFVDLDGNVSS-----PMIVGERVYFLSDHEGVG--NLYSVDLDGKDLRRHT--NFTD-YYPRNANSDGKRIVFQ- 284 (668)
T ss_pred cceeeeeecCCCcCC-----ceEEcceEEEEecccCcc--ceEEeccCCchhhhcC--Cchh-ccccccCCCCcEEEEe-
Confidence 366555 77665432 245577777777642222 3333332 11111222 2222 33334444676 6666
Q ss_pred cCCeEEEEeCCCCcEEEEEEe
Q 048178 318 NSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 318 ~~~~~~~yd~~t~~~~~v~~~ 338 (376)
+.+.++.||++|.+++++.|.
T Consensus 285 ~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred cCCcEEEeCCCcCcceeeecC
Confidence 445599999999999999886
No 102
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.01 E-value=19 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.2
Q ss_pred eCCcEEEEEcCCeEEEEeCCC
Q 048178 309 KKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 309 ~~g~i~~~~~~~~~~~yd~~t 329 (376)
.+|.+|+...++.++.+|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 367788888899999999876
No 103
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=52.55 E-value=14 Score=35.66 Aligned_cols=91 Identities=8% Similarity=0.045 Sum_probs=55.0
Q ss_pred ceEeccccCcccc---CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee----cCCCCCCCCCceeEEEecCe
Q 048178 194 SWRNLKSIDYTMR---LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI----QGPCTLESSLDVTLGIYDQS 266 (376)
Q Consensus 194 ~W~~~~~~~~~~~---~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i----~lP~~~~~~~~~~l~~~~g~ 266 (376)
.||.+.......+ ....+|.+.--+--+++..++ ....+-+||..+++|..- ..|+.+.. .=++++|.
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrGDiPpgcAA----~GfvcdGt 92 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRGDIPPGCAA----FGFVCDGT 92 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcCCCCCchhh----cceEecCc
Confidence 6998876543333 344577777766655543322 255688999999999753 44554432 33566665
Q ss_pred -EEEEEe--cCCCCEEEEEEeCCCce
Q 048178 267 -LSLLLL--DTVDHCFKIWVMQKKNW 289 (376)
Q Consensus 267 -L~l~~~--~~~~~~l~vW~l~~~~W 289 (376)
+.+++. +.+.-.=++|.|+...|
T Consensus 93 rilvFGGMvEYGkYsNdLYELQasRW 118 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQASRW 118 (830)
T ss_pred eEEEEccEeeeccccchHHHhhhhhh
Confidence 666655 34455557777777333
No 104
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=52.43 E-value=72 Score=28.44 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=48.7
Q ss_pred eEEE-ecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCc-EEEE
Q 048178 259 TLGI-YDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGE-LRDF 335 (376)
Q Consensus 259 ~l~~-~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~-~~~v 335 (376)
.+++ -+|+||..+.. +..+.+|.|.+ +. ++.++ -......++|.++.-.++...+..+-++|++++. ++.+
T Consensus 197 t~~vSpDGslcasGgk--dg~~~LwdL~~~k~---lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGK--DGEAMLWDLNEGKN---LYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EEEECCCCCEEecCCC--CceEEEEEccCCce---eEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 3443 48889988765 88999999999 32 66663 3334566777765545555555568999999884 4445
Q ss_pred EE
Q 048178 336 EL 337 (376)
Q Consensus 336 ~~ 337 (376)
..
T Consensus 271 ~~ 272 (315)
T KOG0279|consen 271 KL 272 (315)
T ss_pred cc
Confidence 43
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=51.01 E-value=1.7e+02 Score=25.56 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=86.7
Q ss_pred ecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc
Q 048178 116 GLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS 194 (376)
Q Consensus 116 ~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~ 194 (376)
.....+.+||+.+++... ++.... ...+.+++..+ +++.. . .....+.+|+.+++.
T Consensus 50 ~~~~~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~g~--~l~~~-~---------~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 50 SDSDTIQVIDLATGEVIGTLPSGPD-----------PELFALHPNGK--ILYIA-N---------EDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCeEEEEECCCCcEEEeccCCCC-----------ccEEEECCCCC--EEEEE-c---------CCCCeEEEEECCCCe
Confidence 345678999999887644 433211 12344554433 22221 1 113478888887753
Q ss_pred -eEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEE-EecCeEEEEE
Q 048178 195 -WRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLG-IYDQSLSLLL 271 (376)
Q Consensus 195 -W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~-~~~g~L~l~~ 271 (376)
-..++. ......-.+.-+|.+.+.+... ...+..+|.++..... +..+.. . ..+. .-+|+..++.
T Consensus 107 ~~~~~~~---~~~~~~~~~~~dg~~l~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~--~---~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 107 VLAEIPV---GVEPEGMAVSPDGKIVVNTSET----TNMAHFIDTKTYEIVDNVLVDQR--P---RFAEFTADGKELWVS 174 (300)
T ss_pred EEeEeeC---CCCcceEEECCCCCEEEEEecC----CCeEEEEeCCCCeEEEEEEcCCC--c---cEEEECCCCCEEEEE
Confidence 222211 0101111222356666555432 2246667887654432 222111 1 1222 2355544333
Q ss_pred ecCCCCEEEEEEeCCCceeeEEEECCCCc----eeee--EEEeeCCcE-EEE-EcCCeEEEEeCCCCcEEE
Q 048178 272 LDTVDHCFKIWVMQKKNWIKQSSVGPFIG----IFQP--LLFWKKGAF-FVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 272 ~~~~~~~l~vW~l~~~~W~~~~~i~~~~~----~~~~--~~~~~~g~i-~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
. .....+.+|.++..+-...... .... -..| +.+..+|+. ++. ...+.+..||.++.+..+
T Consensus 175 ~-~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 175 S-EIGGTVSVIDVATRKVIKKITF-EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred c-CCCCEEEEEEcCcceeeeeeee-cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 3 2257899998887332222221 1100 0122 445667775 443 334569999999877654
No 106
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.84 E-value=3.2e+02 Score=28.66 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=23.8
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCC--ceEee
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAE--EKFQE 245 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~--e~~~~ 245 (376)
...++.++|.+|.-... ..++++|.++ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH------NKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCC------CeEEEEECCCCcEEEEE
Confidence 34688999999976543 3799999875 55664
No 107
>PTZ00420 coronin; Provisional
Probab=49.42 E-value=2.9e+02 Score=27.78 Aligned_cols=144 Identities=9% Similarity=0.060 Sum_probs=72.8
Q ss_pred cceEEEEEcCCCc-eEeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNS-WRNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~-W~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
...+.|++.+++. -..+. .+ ....++. -+|.+...+.. ...|..+|+.+.+-.. .++.........
T Consensus 147 DgtIrIWDl~tg~~~~~i~-~~----~~V~SlswspdG~lLat~s~-----D~~IrIwD~Rsg~~i~-tl~gH~g~~~s~ 215 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQIN-MP----KKLSSLKWNIKGNLLSGTCV-----GKHMHIIDPRKQEIAS-SFHIHDGGKNTK 215 (568)
T ss_pred CCeEEEEECCCCcEEEEEe-cC----CcEEEEEECCCCCEEEEEec-----CCEEEEEECCCCcEEE-EEecccCCceeE
Confidence 4578888888763 11111 10 0112232 25665533332 2368899998765421 222211110011
Q ss_pred eEE--E--ecCeEEEEEe-cC-CCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCC
Q 048178 259 TLG--I--YDQSLSLLLL-DT-VDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTG 330 (376)
Q Consensus 259 ~l~--~--~~g~L~l~~~-~~-~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~ 330 (376)
.+. . .++...+... +. ..+.+.||.+.. .+=.....++.-.....|.+....|.+|+.. .++.+.+|+..++
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 111 1 2444434333 21 235899999986 4433333443222224455555567777664 6778999999888
Q ss_pred cEEEEE
Q 048178 331 ELRDFE 336 (376)
Q Consensus 331 ~~~~v~ 336 (376)
.+..+.
T Consensus 296 ~~~~l~ 301 (568)
T PTZ00420 296 SIRKVN 301 (568)
T ss_pred cEEeec
Confidence 766653
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=48.81 E-value=2.1e+02 Score=25.98 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=40.5
Q ss_pred CCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEEEEEEecc
Q 048178 276 DHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 276 ~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 340 (376)
+.++++|.+++ +.=+-+... ....-..-++..++|. ++....++.+-.||+.+++..+|.....
T Consensus 49 D~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~ 114 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA 114 (347)
T ss_pred CCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccc
Confidence 68999999998 322222211 1111122233344665 5555678889999999999999987655
No 109
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=48.78 E-value=2.8e+02 Score=27.51 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=59.7
Q ss_pred CCeEEECceEEEEeeecCCCCccEEEEEECCC--ceEeee-cCCCCCCC-----CCceeEEEecCeEEEEEecCCCCEEE
Q 048178 209 SERTYFDGAFYWLLKLENDNDNYVILSFHMAE--EKFQEI-QGPCTLES-----SLDVTLGIYDQSLSLLLLDTVDHCFK 280 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~--e~~~~i-~lP~~~~~-----~~~~~l~~~~g~L~l~~~~~~~~~l~ 280 (376)
..++..+|.+|.....+ .|.++|.++ +.|+.- ..|..... .....++..+|++++...+ . .
T Consensus 63 stPvv~~g~vyv~s~~g------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d---g--~ 131 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD---A--R 131 (527)
T ss_pred cCCEEECCEEEEECCCC------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC---C--E
Confidence 35788899999755433 799999876 456543 33322211 0112345566776655432 2 2
Q ss_pred EEEeCC----CceeeEEE-EC-CCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEE
Q 048178 281 IWVMQK----KNWIKQSS-VG-PFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRD 334 (376)
Q Consensus 281 vW~l~~----~~W~~~~~-i~-~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~ 334 (376)
++.++. ..|..... .. .......|+. . ++.|++... .+.+..||.+|++...
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-V-KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEE-E-CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 333333 44665321 10 0111123433 2 456666432 4679999999986543
No 110
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=48.65 E-value=2.4e+02 Score=26.54 Aligned_cols=107 Identities=11% Similarity=0.104 Sum_probs=59.4
Q ss_pred ceEEEEeeecCCCCccEEEEEECCCce-EeeecCCCCCCCCCceeEEE-ecCe-EEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 216 GAFYWLLKLENDNDNYVILSFHMAEEK-FQEIQGPCTLESSLDVTLGI-YDQS-LSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 216 G~lywl~~~~~~~~~~~i~~fD~~~e~-~~~i~lP~~~~~~~~~~l~~-~~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
+.++.+...+ ...+-.+|.++.+ ...|+..... +..+.. -+|+ +++.. . +..+.++-+...+ .+
T Consensus 5 ~~l~~V~~~~----~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~-r--dg~vsviD~~~~~--~v 71 (369)
T PF02239_consen 5 GNLFYVVERG----SGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVAN-R--DGTVSVIDLATGK--VV 71 (369)
T ss_dssp GGEEEEEEGG----GTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEE-T--TSEEEEEETTSSS--EE
T ss_pred ccEEEEEecC----CCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEc-C--CCeEEEEECCccc--EE
Confidence 3455555554 4588889988754 4555543322 122332 3566 55543 3 4678888887743 66
Q ss_pred EEECCCCceeeeEEEeeCCcEEEEE--cCCeEEEEeCCCCcEE-EEE
Q 048178 293 SSVGPFIGIFQPLLFWKKGAFFVES--NSSQLLLYEPGTGELR-DFE 336 (376)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~g~i~~~~--~~~~~~~yd~~t~~~~-~v~ 336 (376)
.++ +...-..-+++..+|+.++.. ..+.+..+|.+|.+.- .|.
T Consensus 72 ~~i-~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 72 ATI-KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE-E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEE-ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 666 444334446667789866543 4688999999987543 453
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=48.38 E-value=38 Score=32.76 Aligned_cols=88 Identities=13% Similarity=0.196 Sum_probs=56.1
Q ss_pred EEecCeEEEEEecCCCCEEEEEEeCC-----CceeeEEEECCCCceeeeEEEeeCCcEEEEEc-------CCeEEEEeCC
Q 048178 261 GIYDQSLSLLLLDTVDHCFKIWVMQK-----KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-------SSQLLLYEPG 328 (376)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~l~vW~l~~-----~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-------~~~~~~yd~~ 328 (376)
...+|+..+.. ..+..+.+|-|.. ..|+-+.+. ++ ..-++|..+.+|++.+. .+.|++||..
T Consensus 372 FS~dg~~LlSR--g~D~tLKvWDLrq~kkpL~~~tgL~t~--~~--~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 372 FSYDGNYLLSR--GFDDTLKVWDLRQFKKPLNVRTGLPTP--FP--GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred eccccchhhhc--cCCCceeeeeccccccchhhhcCCCcc--CC--CCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 34566644443 3378999999988 556555443 32 23467888888888742 3569999987
Q ss_pred CC-cEEEEEEecceEEEEEeecCcccc
Q 048178 329 TG-ELRDFELECCWFSIYIYTESLITL 354 (376)
Q Consensus 329 t~-~~~~v~~~~~~~~~~~y~~sLv~~ 354 (376)
|- ...+|.+.+..-..+.|.|-|=++
T Consensus 446 t~d~v~ki~i~~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 446 TLDTVYKIDISTASVVRCLWHPKLNQI 472 (641)
T ss_pred ceeeEEEecCCCceEEEEeecchhhhe
Confidence 75 455677665455556666665433
No 112
>PLN02772 guanylate kinase
Probab=47.46 E-value=1.6e+02 Score=27.94 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=40.3
Q ss_pred eeEEEecCeEEEEEe-cCCC-CEEEEEEeCC--CceeeEEEEC--CCCceeeeEEEeeCCcEEEEE
Q 048178 258 VTLGIYDQSLSLLLL-DTVD-HCFKIWVMQK--KNWIKQSSVG--PFIGIFQPLLFWKKGAFFVES 317 (376)
Q Consensus 258 ~~l~~~~g~L~l~~~-~~~~-~~l~vW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~ 317 (376)
...+++++++++++. ++.. ....+|+++. ..|+.-...+ |.+.-.+..++..++.|++..
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 356778899999998 3222 5678888888 8899976665 443334555556566666653
No 113
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=46.60 E-value=60 Score=25.04 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=36.4
Q ss_pred EeeCCcEEEEE-----cCCeEEEEeCCCCcEEEEEEe--cc----eEEEEEeecCccccCCC
Q 048178 307 FWKKGAFFVES-----NSSQLLLYEPGTGELRDFELE--CC----WFSIYIYTESLITLKGG 357 (376)
Q Consensus 307 ~~~~g~i~~~~-----~~~~~~~yd~~t~~~~~v~~~--~~----~~~~~~y~~sLv~~~~~ 357 (376)
+.-||.++... ....++.||+++.+++.+..+ .. ......|...|.-+...
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 63 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN 63 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec
Confidence 34477776542 246799999999999999885 11 77788888888765333
No 114
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.88 E-value=2.4e+02 Score=29.74 Aligned_cols=77 Identities=16% Similarity=0.439 Sum_probs=46.5
Q ss_pred eEEEecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCc-EEEE
Q 048178 259 TLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGE-LRDF 335 (376)
Q Consensus 259 ~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~-~~~v 335 (376)
.-+...+.|=++....+++.+.+|.|.+ +.|++.-.-+=+..+ ..+-|.++.++++.. .++.+-+||++.++ ++.+
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc-ceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 4455566533333323489999999999 889886433222222 334446566777764 45668888987764 4444
Q ss_pred E
Q 048178 336 E 336 (376)
Q Consensus 336 ~ 336 (376)
+
T Consensus 289 r 289 (1202)
T KOG0292|consen 289 R 289 (1202)
T ss_pred e
Confidence 3
No 115
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=43.53 E-value=70 Score=24.25 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=27.8
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEE
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI 168 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 168 (376)
.+++.||.|+.| +|..+.. ... ..+.+.+++..+.|+|+..
T Consensus 10 ~Vm~~d~~tk~W--~P~~~~~--~~l----s~V~~~~~~~~~~yrIvg~ 50 (111)
T cd01207 10 SVMVYDDSNKKW--VPAGGGS--QGF----SRVQIYHHPRNNTFRVVGR 50 (111)
T ss_pred EeeEEcCCCCcE--EcCCCCC--CCc----ceEEEEEcCCCCEEEEEEe
Confidence 468899999997 5543311 011 1356777888889999985
No 116
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.24 E-value=17 Score=32.07 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=34.3
Q ss_pred CCCCCCCCHHHHHHHHhcCC-ccccceeeecchhhhhhcCChHHHH
Q 048178 3 LLGNDDSPEDIMIEILSRLP-VKSLIRLRCVCKSWYALIKNPNFIS 47 (376)
Q Consensus 3 ~~~~~~LP~Dll~eIl~rLp-~~~l~r~r~VcK~W~~li~~p~F~~ 47 (376)
+....+||.+++.+||.||| -.+|..++.|--.-..++.+...-+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk 244 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK 244 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH
Confidence 34467899999999999999 7889888888666666665544433
No 117
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=42.77 E-value=52 Score=31.91 Aligned_cols=142 Identities=7% Similarity=-0.036 Sum_probs=76.9
Q ss_pred EEecCccceeecCCCCCCCCCcc--ccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccc
Q 048178 123 LWNIATRESVTLPKYRAIIPQYT--RVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKS 200 (376)
Q Consensus 123 V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 200 (376)
.--|.|-.|-++|+......... ..+...-.+.+++.++.-.+..-.. . ...-....+|+-+.+.|..+..
T Consensus 233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd----G---~~~l~DFW~Y~v~e~~W~~iN~ 305 (723)
T KOG2437|consen 233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD----G---TQDLADFWAYSVKENQWTCINR 305 (723)
T ss_pred hcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc----c---chhHHHHHhhcCCcceeEEeec
Confidence 34567778888887653221100 0111223455555544322221111 0 1224577889999999998763
Q ss_pred cCcccc--CCCC-eEEEC--ceEEEEeeecCCC------CccEEEEEECCCceEeeecCCCCCCCC----CceeEEEecC
Q 048178 201 IDYTMR--LSSE-RTYFD--GAFYWLLKLENDN------DNYVILSFHMAEEKFQEIQGPCTLESS----LDVTLGIYDQ 265 (376)
Q Consensus 201 ~~~~~~--~~~~-~v~~~--G~lywl~~~~~~~------~~~~i~~fD~~~e~~~~i~lP~~~~~~----~~~~l~~~~g 265 (376)
-. ..| ..+. .|..- .++|.++..-..+ .+.-+-.||..+.+|..+..-...... ...++++.++
T Consensus 306 ~t-~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~ 384 (723)
T KOG2437|consen 306 DT-EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE 384 (723)
T ss_pred CC-CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC
Confidence 21 112 1122 22222 3677766443222 466799999999999998553332211 3467777766
Q ss_pred e--EEEEEe
Q 048178 266 S--LSLLLL 272 (376)
Q Consensus 266 ~--L~l~~~ 272 (376)
+ +|+.+.
T Consensus 385 k~~iyVfGG 393 (723)
T KOG2437|consen 385 KHMIYVFGG 393 (723)
T ss_pred cceEEEecC
Confidence 6 888877
No 118
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=41.30 E-value=2.9e+02 Score=25.53 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=84.0
Q ss_pred cceEEEEEcCCCceEeccccCcccc-CCCCeEE-ECce-EEEEeeecCCCCccEEEEEECCCceEeee----cCCCCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMR-LSSERTY-FDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEI----QGPCTLES 254 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~-~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i----~lP~~~~~ 254 (376)
.-++.+|+...+.-........... ..+.-++ =||+ +|.++.-.+ ...+..||....++..+ .+|.+...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s---tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS---TVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC---EEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 5588899998876665543221111 1222232 3566 565554432 34455666666777765 57877655
Q ss_pred CC-ceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCc-eeeeEEEeeCCcEEEEEcC--C--eEEE
Q 048178 255 SL-DVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIG-IFQPLLFWKKGAFFVESNS--S--QLLL 324 (376)
Q Consensus 255 ~~-~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~--~--~~~~ 324 (376)
.. ...+-.. +|+ |++... ....|.++..++ +.=..+... +... ..+-+-+...|++++.-++ + .+|.
T Consensus 243 ~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNR--GHDSIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCceeEEEECCCCCEEEEecC--CCCeEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 32 2333333 555 554443 245677777777 444444444 3332 2344666677887766332 2 3777
Q ss_pred EeCCCCcEEEEEE
Q 048178 325 YEPGTGELRDFEL 337 (376)
Q Consensus 325 yd~~t~~~~~v~~ 337 (376)
-|.+|+++.++.-
T Consensus 320 ~d~~TG~L~~~~~ 332 (346)
T COG2706 320 RDKETGRLTLLGR 332 (346)
T ss_pred EcCCCceEEeccc
Confidence 7899999998753
No 119
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=41.11 E-value=19 Score=32.89 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHhcCCc--------cccceeeecchhhhhhcCC
Q 048178 5 GNDDSPEDIMIEILSRLPV--------KSLIRLRCVCKSWYALIKN 42 (376)
Q Consensus 5 ~~~~LP~Dll~eIl~rLp~--------~~l~r~r~VcK~W~~li~~ 42 (376)
.++.||.++|.+|+.|..- ++.+.+..|||.|+.+..+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4578999999999999862 4678999999999997654
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=41.07 E-value=1.7e+02 Score=30.18 Aligned_cols=94 Identities=20% Similarity=0.337 Sum_probs=58.7
Q ss_pred EEEEEECCCceEee---ecCCCCCCCCCceeEEEe--cCeEEEEEecCCCCEEEEEEeCC--------CceeeEEEECCC
Q 048178 232 VILSFHMAEEKFQE---IQGPCTLESSLDVTLGIY--DQSLSLLLLDTVDHCFKIWVMQK--------KNWIKQSSVGPF 298 (376)
Q Consensus 232 ~i~~fD~~~e~~~~---i~lP~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~--------~~W~~~~~i~~~ 298 (376)
..-.||....+|.. |..|.+... .....+ -.+.-++.. +.+..+.||.+.+ ..|..+..= .+
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~---vat~~~~~~rs~~~vta-~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-sy 507 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAF---VATIFLNPTRSVRCVTA-SVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-SY 507 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCcee---EEEEEecCcccceeEEe-ccCCeEEEEEEecccccCcCccceEEeeee-cc
Confidence 45667777777743 567766543 111111 112133333 3378999999954 669988643 44
Q ss_pred Cce-eeeEEEeeCCcEEEEEcCCeEEEEeCCCC
Q 048178 299 IGI-FQPLLFWKKGAFFVESNSSQLLLYEPGTG 330 (376)
Q Consensus 299 ~~~-~~~~~~~~~g~i~~~~~~~~~~~yd~~t~ 330 (376)
... ....++..+|.++....++.+-.||..++
T Consensus 508 ~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 322 33356667899998888888999999993
No 121
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.78 E-value=2.4e+02 Score=26.22 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEE
Q 048178 276 DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 276 ~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~v 335 (376)
+..+.+|.+..+ .-+.++.......+-++|..+|+.++. .+++.+-+||+++++-.+.
T Consensus 313 DktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 313 DKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 789999998874 344555444445777888889997765 5567799999999865443
No 122
>PRK05137 tolB translocation protein TolB; Provisional
Probab=38.47 E-value=3.6e+02 Score=25.78 Aligned_cols=188 Identities=9% Similarity=0.012 Sum_probs=91.2
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEe
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
...++++|+.|++...+...+... ....+.|. ++.-++.... .....+.+++.+++.-+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPD-G~~la~~~~~---------~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPD-GRKVVMSLSQ---------GGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcc----------cCcEECCC-CCEEEEEEec---------CCCceEEEEECCCCceEE
Confidence 467899999999887765433211 12223332 2222222211 224567777888887666
Q ss_pred ccccCccccCCCCeEEECce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCe-EEEEEecCC
Q 048178 198 LKSIDYTMRLSSERTYFDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQS-LSLLLLDTV 275 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~-L~l~~~~~~ 275 (376)
+...+. ........-+|. +++..... + ...|..+|.++...+.+....... .... ..-+|+ |++.....+
T Consensus 285 Lt~~~~--~~~~~~~spDG~~i~f~s~~~-g--~~~Iy~~d~~g~~~~~lt~~~~~~--~~~~-~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 285 LTDSPA--IDTSPSYSPDGSQIVFESDRS-G--SPQLYVMNADGSNPRRISFGGGRY--STPV-WSPRGDLIAFTKQGGG 356 (435)
T ss_pred ccCCCC--ccCceeEcCCCCEEEEEECCC-C--CCeEEEEECCCCCeEEeecCCCcc--cCeE-ECCCCCEEEEEEcCCC
Confidence 543221 011112223454 44333221 1 346888888877666553211111 0111 123555 555554322
Q ss_pred CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEEc-C-----CeEEEEeCCCCcEEEEEE
Q 048178 276 DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESN-S-----SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 276 ~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~-~-----~~~~~yd~~t~~~~~v~~ 337 (376)
...+.+|.++.+. .+..+- .. ....| .+.++|+ |++... . ..++.+|+.++..+.+..
T Consensus 357 ~~~i~~~d~~~~~-~~~lt~-~~-~~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 357 QFSIGVMKPDGSG-ERILTS-GF-LVEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred ceEEEEEECCCCc-eEeccC-CC-CCCCC-eECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 3445555554333 222221 11 12233 4566777 455432 1 369999999887776653
No 123
>PLN00181 protein SPA1-RELATED; Provisional
Probab=36.98 E-value=5.2e+02 Score=27.13 Aligned_cols=186 Identities=10% Similarity=0.090 Sum_probs=92.9
Q ss_pred ceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 110 GIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
..|.....+..+.|||..+++.... ... +... ...+.+++..+.+-+.+ .....+.+|+
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~--~~~--H~~~-----V~~l~~~p~~~~~L~Sg------------s~Dg~v~iWd 604 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTE--MKE--HEKR-----VWSIDYSSADPTLLASG------------SDDGSVKLWS 604 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEE--ecC--CCCC-----EEEEEEcCCCCCEEEEE------------cCCCEEEEEE
Confidence 3444445567889999887764331 110 1111 24566665444432222 1245788888
Q ss_pred cCCCc-eEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecC
Q 048178 190 LSTNS-WRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQ 265 (376)
Q Consensus 190 s~t~~-W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g 265 (376)
.+++. ...+... ....++.+ +|.....+.. ...|..+|+.+..-....+..... .-..+.-.++
T Consensus 605 ~~~~~~~~~~~~~-----~~v~~v~~~~~~g~~latgs~-----dg~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~~~ 672 (793)
T PLN00181 605 INQGVSIGTIKTK-----ANICCVQFPSESGRSLAFGSA-----DHKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFVDS 672 (793)
T ss_pred CCCCcEEEEEecC-----CCeEEEEEeCCCCCEEEEEeC-----CCeEEEEECCCCCccceEecCCCC--CEEEEEEeCC
Confidence 87652 2222110 00112222 3444433332 347888998764311111111100 1122333456
Q ss_pred eEEEEEecCCCCEEEEEEeCC----CceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCC
Q 048178 266 SLSLLLLDTVDHCFKIWVMQK----KNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTG 330 (376)
Q Consensus 266 ~L~l~~~~~~~~~l~vW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~ 330 (376)
...+.... +..+.||.+.. ..|..+..+.........+++..+|.+++. ..++.+..|+..+.
T Consensus 673 ~~lvs~s~--D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSST--DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEEC--CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 65444443 67899999875 246666665322222344566666766655 45778999997655
No 124
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=36.61 E-value=4.4e+02 Score=26.19 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=61.7
Q ss_pred cceEEEeecCCeEEEEecCccceee--cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 109 CGIVFIEGLNNRITLWNIATRESVT--LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~--LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+|.|.+.+....++-.|..|++.+. =+..+.............-+..+. +. +|+.. ...-.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~-~v~v~-----------t~dg~l~ 133 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DG-KVFFG-----------TLDARLV 133 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CC-EEEEE-----------cCCCEEE
Confidence 7888887766677778999988333 222211100000000000011111 11 23321 1133566
Q ss_pred EEEcCCC--ceEeccc-cCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--EeeecCCC
Q 048178 187 VYNLSTN--SWRNLKS-IDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQEIQGPC 250 (376)
Q Consensus 187 vyss~t~--~W~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~i~lP~ 250 (376)
-++.+|+ .|+.-.. ..........++..+|.+|.-....+......|.+||.++.+ |+.-..|.
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 6777776 5875321 111122334578889988865432111114589999998754 55434443
No 125
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=34.90 E-value=3.8e+02 Score=25.02 Aligned_cols=116 Identities=9% Similarity=0.148 Sum_probs=70.1
Q ss_pred EEECceEEEEeeecCCCCccEEEEEECCCc------eEeeecCCC---CC-CCCCceeEEEe-cC-eEEEEEe-cC----
Q 048178 212 TYFDGAFYWLLKLENDNDNYVILSFHMAEE------KFQEIQGPC---TL-ESSLDVTLGIY-DQ-SLSLLLL-DT---- 274 (376)
Q Consensus 212 v~~~G~lywl~~~~~~~~~~~i~~fD~~~e------~~~~i~lP~---~~-~~~~~~~l~~~-~g-~L~l~~~-~~---- 274 (376)
...+|..+|+...+ .+..+|++.. .|..+..-. .- ....+. ++.. +| ++|++.. ..
T Consensus 202 ~~~dg~~~~vs~eG------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 202 SNKSGRLVWPTYTG------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred EcCCCcEEEEecCC------eEEEEecCCCcceecceeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCccccc
Confidence 33479999998764 7888886443 233331110 10 011112 3333 34 4777432 11
Q ss_pred CCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEEc--CCeEEEEeCCCCc-EEEE
Q 048178 275 VDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESN--SSQLLLYEPGTGE-LRDF 335 (376)
Q Consensus 275 ~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~--~~~~~~yd~~t~~-~~~v 335 (376)
....=+||+.+-.++..+.++ +...-...+++..+|+ .++..+ .+.+.++|..+.+ ++.+
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i-~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKI-ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEE-eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 122238889888889999999 6664455677888888 666543 4569999999884 5556
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=34.81 E-value=3.7e+02 Score=24.74 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=26.2
Q ss_pred eeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEEEE
Q 048178 303 QPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 303 ~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~v~~ 337 (376)
.-+|+.+++.+++. ..+..++.|+++.+.+..|.-
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idt 226 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDT 226 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecCCceeeeecc
Confidence 33777767777765 446679999999988888854
No 127
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=34.53 E-value=4.1e+02 Score=25.19 Aligned_cols=118 Identities=7% Similarity=0.028 Sum_probs=69.4
Q ss_pred EEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEe-cCCCCEEEEEEeCC-Cce
Q 048178 212 TYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLL-DTVDHCFKIWVMQK-KNW 289 (376)
Q Consensus 212 v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~-~~~~~~l~vW~l~~-~~W 289 (376)
...||.+...+.. ...|-++|+.+++.-.-. +...+......+..-+|.++-.+. ....+.+.+|..+. ++=
T Consensus 181 fn~dGs~l~Ttck-----DKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 181 FNRDGSLLCTTCK-----DKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred eccCCceeeeecc-----cceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc
Confidence 3456777766554 347899999988765444 322222222345555666555555 34578899998887 222
Q ss_pred eeEEEECCCCceeeeEEEeeCCcEEEEEc-CCeEEEEeCCCCc--EEEE
Q 048178 290 IKQSSVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGE--LRDF 335 (376)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~~~~~~yd~~t~~--~~~v 335 (376)
.-...+|.-.++..|++-.+.+-||+++. ++.+-+|...... ++.+
T Consensus 255 ~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 255 IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 44566654455677776443344666654 5567777666555 4444
No 128
>PF13854 Kelch_5: Kelch motif
Probab=34.30 E-value=94 Score=18.47 Aligned_cols=28 Identities=4% Similarity=0.025 Sum_probs=18.7
Q ss_pred eeEEEecCeEEEEEecC---CCCEEEEEEeC
Q 048178 258 VTLGIYDQSLSLLLLDT---VDHCFKIWVMQ 285 (376)
Q Consensus 258 ~~l~~~~g~L~l~~~~~---~~~~l~vW~l~ 285 (376)
...+..+++|++.+... ....=++|+++
T Consensus 8 hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 8 HSAVVVGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred eEEEEECCEEEEEcCccCCCCCEECcEEEEE
Confidence 46677789999999842 22233777765
No 129
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.52 E-value=2.8e+02 Score=23.83 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=50.9
Q ss_pred eeEEEecCe-EEEEEecCCCCEEEEEEeCCCceeeEE-EECCC-C----------ceeeeEEEeeCCcEEEEEcCCeEEE
Q 048178 258 VTLGIYDQS-LSLLLLDTVDHCFKIWVMQKKNWIKQS-SVGPF-I----------GIFQPLLFWKKGAFFVESNSSQLLL 324 (376)
Q Consensus 258 ~~l~~~~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~-~i~~~-~----------~~~~~~~~~~~g~i~~~~~~~~~~~ 324 (376)
.....++|. |.++.. ...+.||.++..+=.... .+-|+ . ....-+.+.++|..++...++..|.
T Consensus 15 ~~~l~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 15 VSFLECNGSYLLAITS---SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred eEEEEeCCCEEEEEeC---CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 344556666 444443 789999999882100000 01010 0 0122344456788666655567899
Q ss_pred EeCCCCcEEEEEEecceEEEEEeecCcc
Q 048178 325 YEPGTGELRDFELECCWFSIYIYTESLI 352 (376)
Q Consensus 325 yd~~t~~~~~v~~~~~~~~~~~y~~sLv 352 (376)
||.+-+.|.+|.-.. +.....|..++.
T Consensus 92 y~~~L~~W~~vsd~w-~~~~S~~~~~~~ 118 (219)
T PF07569_consen 92 YSPDLGCWIRVSDSW-WAIGSQYWDSLP 118 (219)
T ss_pred eccccceeEEeccch-hhhhcccccccC
Confidence 999999999985542 333344444443
No 130
>PRK00178 tolB translocation protein TolB; Provisional
Probab=33.41 E-value=4.3e+02 Score=25.12 Aligned_cols=186 Identities=10% Similarity=0.035 Sum_probs=91.8
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEe
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
...++++|..|++...+...+... ....+.|. +++-++.... .....+.+++.+++..+.
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~----------~~~~~SpD-G~~la~~~~~---------~g~~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN----------GAPAWSPD-GSKLAFVLSK---------DGNPEIYVMDLASRQLSR 281 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc----------CCeEECCC-CCEEEEEEcc---------CCCceEEEEECCCCCeEE
Confidence 357899999999888776543211 11233332 2322222211 124578888999988876
Q ss_pred ccccCccccCCCCeEEECce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEE-EecCe-EEEEEecC
Q 048178 198 LKSIDYTMRLSSERTYFDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG-IYDQS-LSLLLLDT 274 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~-~~~g~-L~l~~~~~ 274 (376)
+..... ........-+|. +++...... ...|..+|+.+.....+....... .... .-+|+ |++.....
T Consensus 282 lt~~~~--~~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~~~~----~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 282 VTNHPA--IDTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVGNYN----ARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred cccCCC--CcCCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCCCc----cceEECCCCCEEEEEEccC
Confidence 643211 111111223554 555543221 346888898887776654322111 1111 22555 55554432
Q ss_pred CCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEEc---CCeEEEEeCCCCcEEEEE
Q 048178 275 VDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESN---SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 275 ~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~---~~~~~~yd~~t~~~~~v~ 336 (376)
....+.+|.++.++...+..- ... ..| .+..+|+ |++... ...++..+..++.-+.+.
T Consensus 353 ~~~~l~~~dl~tg~~~~lt~~-~~~--~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 353 GNFHVAAQDLQRGSVRILTDT-SLD--ESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CceEEEEEECCCCCEEEccCC-CCC--CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 223344444444544443321 111 234 4566777 445433 235888888766655554
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=33.25 E-value=6.1e+02 Score=26.83 Aligned_cols=139 Identities=13% Similarity=0.159 Sum_probs=63.1
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
...+.+|......=..+- .+..++. ..+.++|.=-|++..++ ...|-..++....-...-.+..... .+|-
T Consensus 75 ~~tv~~y~fps~~~~~iL-~Rftlp~--r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s~~~~lrgh~apV---l~l~ 145 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTIL-ARFTLPI--RDLAVSGSGKMIAAGSD---DTAVKLLNLDDSSQEKVLRGHDAPV---LQLS 145 (933)
T ss_pred cceEEEeeCCCCCcccee-eeeeccc--eEEEEecCCcEEEeecC---ceeEEEEeccccchheeecccCCce---eeee
Confidence 567777877665433221 1112222 34444444333332221 3456666555443332222222111 1222
Q ss_pred E-ecCeEEEEEecCCCCEEEEEEeCC----CceeeEEEECCCC--ceeeeEEEee-CCcEEEEEcCCeEEEEeCCCCc
Q 048178 262 I-YDQSLSLLLLDTVDHCFKIWVMQK----KNWIKQSSVGPFI--GIFQPLLFWK-KGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 262 ~-~~g~L~l~~~~~~~~~l~vW~l~~----~~W~~~~~i~~~~--~~~~~~~~~~-~g~i~~~~~~~~~~~yd~~t~~ 331 (376)
- -+|.+..+... +..+.||.+++ ..|..+..-.... .+..-.+..+ +|.+.+..-++.+.+|+.++..
T Consensus 146 ~~p~~~fLAvss~--dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 146 YDPKGNFLAVSSC--DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred EcCCCCEEEEEec--CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 1 24443333323 78999999998 4565553221111 1122223233 3666666555666666665543
No 132
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=33.08 E-value=67 Score=24.79 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=21.1
Q ss_pred EEEEEcCCeEEEEeCCCCcEEEEEEecc
Q 048178 313 FFVESNSSQLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 313 i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 340 (376)
|+.....-.++.||.++++|++.+++|.
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEee
Confidence 3333333458888899999999999986
No 133
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=33.00 E-value=3.8e+02 Score=24.42 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=42.6
Q ss_pred EEEcCC--CceEeccccCccc-cCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 187 VYNLST--NSWRNLKSIDYTM-RLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 187 vyss~t--~~W~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
||...+ .+|.......... ...-..+..++.--|+... ...|+--.-.-++|..+++|...... ...+..+
T Consensus 39 il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~-----~g~ll~T~DgG~tW~~v~l~~~lpgs-~~~i~~l 112 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE-----PGLLLHTTDGGKTWERVPLSSKLPGS-PFGITAL 112 (302)
T ss_dssp EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE-----TTEEEEESSTTSS-EE----TT-SS--EEEEEEE
T ss_pred EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC-----CceEEEecCCCCCcEEeecCCCCCCC-eeEEEEc
Confidence 444433 3798876321111 1112345544444456554 23566666688999999876543321 1233444
Q ss_pred cC-eEEEEEecCCCCEEEEEEeCC--CceeeEEE
Q 048178 264 DQ-SLSLLLLDTVDHCFKIWVMQK--KNWIKQSS 294 (376)
Q Consensus 264 ~g-~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~ 294 (376)
+. ...++... =.||.-.+ .+|..+..
T Consensus 113 ~~~~~~l~~~~-----G~iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 113 GDGSAELAGDR-----GAIYRTTDGGKTWQAVVS 141 (302)
T ss_dssp ETTEEEEEETT-------EEEESSTTSSEEEEE-
T ss_pred CCCcEEEEcCC-----CcEEEeCCCCCCeeEccc
Confidence 44 34444331 25888888 88988754
No 134
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.52 E-value=1.4e+02 Score=27.26 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=39.8
Q ss_pred CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEEE
Q 048178 274 TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 274 ~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~v~ 336 (376)
.++.++.||.|..+. +.+.+| ....-.--+++..++.|+-. ++...+-.||+.++++-++.
T Consensus 375 SDDrTvKvWdLrNMR-splATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR-SPLATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CCCceEEEeeecccc-Ccceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 447899999998721 122333 12111233666766767755 56677999999999999885
No 135
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=31.91 E-value=2e+02 Score=25.32 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=51.0
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEec-CCCCEEEEEEeCC----CceeeEE-EECCCCceeeeE
Q 048178 232 VILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLD-TVDHCFKIWVMQK----KNWIKQS-SVGPFIGIFQPL 305 (376)
Q Consensus 232 ~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~-~~~~~l~vW~l~~----~~W~~~~-~i~~~~~~~~~~ 305 (376)
.-..||+.+.+++.+..+...-... ...--+|++...+.+ .+...+.++.... ..|.... .| .....+.-.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSg--g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~ 123 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSG--GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTA 123 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccC--cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccc
Confidence 4678999999999887765443221 222347888877773 3445666666543 5688764 35 333333334
Q ss_pred EEeeCCcEEEEEc
Q 048178 306 LFWKKGAFFVESN 318 (376)
Q Consensus 306 ~~~~~g~i~~~~~ 318 (376)
..-.||++++...
T Consensus 124 ~~L~DG~vlIvGG 136 (243)
T PF07250_consen 124 TTLPDGRVLIVGG 136 (243)
T ss_pred eECCCCCEEEEeC
Confidence 4455888877754
No 136
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.78 E-value=2.6e+02 Score=26.54 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=35.0
Q ss_pred cCeEEEEEecCCCCEEEEEEeCC---CceeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCc
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQK---KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~ 331 (376)
+|.- ++.+ ..+.++..|-+++ +.|.-+.. |. ..-+++..||+ ++....+.++..||.+++.
T Consensus 323 Dg~~-~V~G-s~dr~i~~wdlDgn~~~~W~gvr~--~~---v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 323 DGFR-FVTG-SPDRTIIMWDLDGNILGNWEGVRD--PK---VHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred CCce-eEec-CCCCcEEEecCCcchhhccccccc--ce---eEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 4444 4444 3368899999988 77876542 11 12245555666 4444455556666666543
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=31.35 E-value=5.1e+02 Score=25.41 Aligned_cols=78 Identities=13% Similarity=0.294 Sum_probs=52.4
Q ss_pred CCEEEEEEeCCCceeeEEEE-C-CCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEEEecc--eEEEEEe-ecC
Q 048178 276 DHCFKIWVMQKKNWIKQSSV-G-PFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECC--WFSIYIY-TES 350 (376)
Q Consensus 276 ~~~l~vW~l~~~~W~~~~~i-~-~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~~~~~--~~~~~~y-~~s 350 (376)
..++.-|.+..++-.+...+ . +.......++|.++|+++-...++.+.+|+..++++.+-...+. .+..+.- ...
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc
Confidence 67889998888666665433 1 11123556778889999888888899999999999887543322 4444333 445
Q ss_pred ccc
Q 048178 351 LIT 353 (376)
Q Consensus 351 Lv~ 353 (376)
|+|
T Consensus 301 llS 303 (626)
T KOG2106|consen 301 LLS 303 (626)
T ss_pred Eee
Confidence 666
No 138
>PF15408 PH_7: Pleckstrin homology domain
Probab=31.28 E-value=15 Score=26.11 Aligned_cols=24 Identities=25% Similarity=0.700 Sum_probs=19.6
Q ss_pred cccceeeecchhhhhhcCChHHHH
Q 048178 24 KSLIRLRCVCKSWYALIKNPNFIS 47 (376)
Q Consensus 24 ~~l~r~r~VcK~W~~li~~p~F~~ 47 (376)
+.++..+-|||.|-..+.+|+|+-
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhhh
Confidence 455667789999999999999863
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=31.02 E-value=5.8e+02 Score=25.91 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=21.7
Q ss_pred eeeeecceEEEeecCCeEEEEecCccceee
Q 048178 104 FKGLYCGIVFIEGLNNRITLWNIATRESVT 133 (376)
Q Consensus 104 ~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~ 133 (376)
+..=++|.+...+..+.+-+||+.++...+
T Consensus 210 v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 210 VLFLRDSTIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred EEEeecCcEEEecCCceEEEEcccCcchhh
Confidence 333467777777777788999999887654
No 140
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.60 E-value=7.7e+02 Score=27.18 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=39.0
Q ss_pred EEEEEECCCceEeee--cCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEE
Q 048178 232 VILSFHMAEEKFQEI--QGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSV 295 (376)
Q Consensus 232 ~i~~fD~~~e~~~~i--~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i 295 (376)
.|+-|.-+...-..+ +.|.+... ...|.-. ++. |++.........+.+|.....+|-++..+
T Consensus 267 ~IvffErNGL~hg~f~l~~p~de~~--ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLDEKE--VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred cEEEEecCCccccccccCCcccccc--hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 577777665555544 44544432 2234433 333 66655544456699999999999999777
No 141
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.43 E-value=4.1e+02 Score=23.94 Aligned_cols=110 Identities=11% Similarity=0.190 Sum_probs=60.1
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+++||+.++||..+-.. .... ...+.+. ++=+|+..+...... .....+..|+..+.+|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~----i~G~-----V~~l~~~---~~~~Llv~G~ft~~~----~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG----ISGT-----VTDLQWA---SNNQLLVGGNFTLNG----TNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CEEEEEECCCCEeecCCCC----ceEE-----EEEEEEe---cCCEEEEEEeeEECC----CCceeEEEEecCCCeeeec
Confidence 4468999999999885433 1111 2344443 334565555443332 2367899999999999888
Q ss_pred cccC-ccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeec
Q 048178 199 KSID-YTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ 247 (376)
Q Consensus 199 ~~~~-~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~ 247 (376)
..-. ...+....++.. ++.=.|+++.. .....+|..|| ..+|+.+.
T Consensus 80 ~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~d--Gs~W~~i~ 129 (281)
T PF12768_consen 80 GGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANGSTFLMKYD--GSSWSSIG 129 (281)
T ss_pred CCcccccCCCcEEEEEeeccCCceEEEecee-cCCCceEEEEc--CCceEecc
Confidence 7522 222211112222 44445544432 11245677774 33566553
No 142
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.03 E-value=3.9e+02 Score=23.61 Aligned_cols=119 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCcccc----CCCCeEEECceEEEEeeecCCCCccEE
Q 048178 158 PKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMR----LSSERTYFDGAFYWLLKLENDNDNYVI 233 (376)
Q Consensus 158 ~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~----~~~~~v~~~G~lywl~~~~~~~~~~~i 233 (376)
+....+|++.-++ ...+.|.....++|+.-.-+..+-. ..-.+..-.+..+-.....++ ...|
T Consensus 171 ~~~~~krlvSgGc-----------Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg--~viI 237 (299)
T KOG1332|consen 171 PAAKVKRLVSGGC-----------DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG--TVII 237 (299)
T ss_pred cccccceeeccCC-----------ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC--cEEE
Q ss_pred EEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC-CceeeE
Q 048178 234 LSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQ 292 (376)
Q Consensus 234 ~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~ 292 (376)
..-|-+.|.|....|-......+...---.+..|++.+. +.++.+|.-+. ++|.++
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G---dNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG---DNKVTLWKENVDGKWEEV 294 (299)
T ss_pred EEecCccCcccccccccCCcceEEEEEeccccEEEEecC---CcEEEEEEeCCCCcEEEc
No 143
>PRK04922 tolB translocation protein TolB; Provisional
Probab=29.68 E-value=5e+02 Score=24.78 Aligned_cols=187 Identities=10% Similarity=0.011 Sum_probs=93.2
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEe
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
...++++|..+++...+-..+... ....+.|. ++.-++.... .....+.+++..++.-+.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~----------~~~~~SpD-G~~l~~~~s~---------~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGIN----------GAPSFSPD-GRRLALTLSR---------DGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCc----------cCceECCC-CCEEEEEEeC---------CCCceEEEEECCCCCeEE
Confidence 356899999988877664332110 12223332 2222222211 124578888888887665
Q ss_pred ccccCccccCCCCeEEECce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEE-EecCe-EEEEEecC
Q 048178 198 LKSIDYTMRLSSERTYFDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG-IYDQS-LSLLLLDT 274 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~-~~~g~-L~l~~~~~ 274 (376)
+..... ........-+|. +++...... ...|..+|+.+.....+...... ..... .-+|+ +++.....
T Consensus 287 lt~~~~--~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g~~----~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 287 LTNHFG--IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQGNY----NARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred CccCCC--CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCCCC----ccCEEECCCCCEEEEEECCC
Confidence 542211 011112223554 444432221 33677888887776655422111 11222 22555 55554432
Q ss_pred CCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEEc---CCeEEEEeCCCCcEEEEEE
Q 048178 275 VDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESN---SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 275 ~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~---~~~~~~yd~~t~~~~~v~~ 337 (376)
....+.+|.++.+....+..- . ....| .+..+|. |++... ...++.+|++++..+++..
T Consensus 358 ~~~~I~v~d~~~g~~~~Lt~~-~--~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 358 GQYRIAVMDLSTGSVRTLTPG-S--LDESP-SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CceeEEEEECCCCCeEECCCC-C--CCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 334667777665554433211 1 11233 4566777 555433 3468999998776666643
No 144
>PRK13684 Ycf48-like protein; Provisional
Probab=28.78 E-value=4.7e+02 Score=24.10 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=65.7
Q ss_pred EEEEcCC--CceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 186 TVYNLST--NSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 186 ~vyss~t--~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
.||.+.+ .+|+...............+.+.+.--|+... ...|+.=+-.-++|+.+..|...... ...+...
T Consensus 67 ~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~-----~g~i~~S~DgG~tW~~~~~~~~~~~~-~~~i~~~ 140 (334)
T PRK13684 67 TLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQ-----PSLLLHTTDGGKNWTRIPLSEKLPGS-PYLITAL 140 (334)
T ss_pred EEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCC-----CceEEEECCCCCCCeEccCCcCCCCC-ceEEEEE
Confidence 4565544 37998653210111112344444443466543 22455555556799988655322111 1122233
Q ss_pred cC-eEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEE-eCCCCcEEEEE
Q 048178 264 DQ-SLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLY-EPGTGELRDFE 336 (376)
Q Consensus 264 ~g-~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~y-d~~t~~~~~v~ 336 (376)
++ .++++.. .=.|+.-++ .+|.++..- ......-+.+..++.++.....+.++.- |....+|+.+.
T Consensus 141 ~~~~~~~~g~-----~G~i~~S~DgG~tW~~~~~~--~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~ 210 (334)
T PRK13684 141 GPGTAEMATN-----VGAIYRTTDGGKNWEALVED--AAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQ 210 (334)
T ss_pred CCCcceeeec-----cceEEEECCCCCCceeCcCC--CcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEee
Confidence 32 3433332 115677777 889987642 2222222333445555555555544433 34445676653
No 145
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.49 E-value=6.9e+02 Score=25.97 Aligned_cols=136 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQS 293 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~ 293 (376)
+|.+--.+.++. .|-+.|..+...... .=+..... ..-....|...+...- +.++..|.|+...=-+-+
T Consensus 361 Dgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~Vt---~v~f~~~g~~llssSL--DGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGVT---AVQFTARGNVLLSSSL--DGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred CCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCceE---EEEEEecCCEEEEeec--CCeEEeeeecccceeeee
Q ss_pred EECCCCceeeeEEEeeCCcEEEEEcCCe--EEEEeCCCCcEEEE--EEecc--eEEEEEeecCccccCCCCCcc
Q 048178 294 SVGPFIGIFQPLLFWKKGAFFVESNSSQ--LLLYEPGTGELRDF--ELECC--WFSIYIYTESLITLKGGESVF 361 (376)
Q Consensus 294 ~i~~~~~~~~~~~~~~~g~i~~~~~~~~--~~~yd~~t~~~~~v--~~~~~--~~~~~~y~~sLv~~~~~~~~~ 361 (376)
+. |-+--...+++.+.|++++...... +++++.+|+++-.+ +-+|. ...+.+-...|+|........
T Consensus 431 t~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 431 TS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred cC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
No 146
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.47 E-value=5.4e+02 Score=27.35 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=44.0
Q ss_pred eEEEEEecCCCCEEEEEEeCC-----------Cc-eeeEEE--ECCCC-----ce-------eeeEEEeeCCcEEEEEcC
Q 048178 266 SLSLLLLDTVDHCFKIWVMQK-----------KN-WIKQSS--VGPFI-----GI-------FQPLLFWKKGAFFVESNS 319 (376)
Q Consensus 266 ~L~l~~~~~~~~~l~vW~l~~-----------~~-W~~~~~--i~~~~-----~~-------~~~~~~~~~g~i~~~~~~ 319 (376)
.|.+...+ +..+.||.|+. +. |..-.. ++-+. ++ .+|..+..++-+++.. +
T Consensus 263 ~lIlSnsE--DksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d 339 (1202)
T KOG0292|consen 263 DLILSNSE--DKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-D 339 (1202)
T ss_pred ceeEecCC--CccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-c
Confidence 45555544 88999999987 11 555433 21010 00 4565555434344443 6
Q ss_pred CeEEEEeCCCCcEEEE-EEe--cc---eEEEEEeecC
Q 048178 320 SQLLLYEPGTGELRDF-ELE--CC---WFSIYIYTES 350 (376)
Q Consensus 320 ~~~~~yd~~t~~~~~v-~~~--~~---~~~~~~y~~s 350 (376)
..+..||+.|.+=..+ .+. |. -++...|.|.
T Consensus 340 ~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpa 376 (1202)
T KOG0292|consen 340 RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPA 376 (1202)
T ss_pred ceEEeeeccccccceeEeccCCCcccCCcceeeeccc
Confidence 7799999998653333 332 22 4445556554
No 147
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=28.20 E-value=3.6e+02 Score=22.60 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=47.5
Q ss_pred EEEEEECCCceE-eeecCCCCCCCCCceeEEEec-CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee
Q 048178 232 VILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYD-QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK 309 (376)
Q Consensus 232 ~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~-g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (376)
.+..+|+.+.+. ..+.. .. . .-..+.... +.+.+.... ...+.+|.+.. ...+..+........-+.+.+
T Consensus 116 ~i~~~~~~~~~~~~~~~~-~~-~--~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~ 187 (289)
T cd00200 116 TIKVWDVETGKCLTTLRG-HT-D--WVNSVAFSPDGTFVASSSQ--DGTIKLWDLRT--GKCVATLTGHTGEVNSVAFSP 187 (289)
T ss_pred eEEEEECCCcEEEEEecc-CC-C--cEEEEEEcCcCCEEEEEcC--CCcEEEEEccc--cccceeEecCccccceEEECC
Confidence 788899885443 22231 11 0 112333333 344443332 67889998875 122222211111123345555
Q ss_pred CCc-EEEEEcCCeEEEEeCCCCcE
Q 048178 310 KGA-FFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 310 ~g~-i~~~~~~~~~~~yd~~t~~~ 332 (376)
++. +++...++.+..||.++++.
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred CcCEEEEecCCCcEEEEECCCCce
Confidence 664 55566678899999987543
No 148
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=26.93 E-value=1.2e+02 Score=29.59 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=70.2
Q ss_pred CCeEEECc--eEEEEeeecCCCCccEEEEEECCCceEeeec----CCCCCCCCCceeEEEecCeEEEEEec-------CC
Q 048178 209 SERTYFDG--AFYWLLKLENDNDNYVILSFHMAEEKFQEIQ----GPCTLESSLDVTLGIYDQSLSLLLLD-------TV 275 (376)
Q Consensus 209 ~~~v~~~G--~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~----lP~~~~~~~~~~l~~~~g~L~l~~~~-------~~ 275 (376)
...|...| ++|..++.++...-.-.-+|....+.|..+. .|..... ....+-+...+|++++-. ..
T Consensus 264 HQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC-HRMVid~S~~KLYLlG~Y~~sS~r~~~ 342 (723)
T KOG2437|consen 264 HQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSC-HRMVIDISRRKLYLLGRYLDSSVRNSK 342 (723)
T ss_pred ceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhh-hhhhhhhhHhHHhhhhhcccccccccc
Confidence 34677777 7887665442211223577889999999984 3443322 111222334567777651 23
Q ss_pred CCEEEEEEeCC--CceeeEEEECCCC-----ceeeeEEEeeC-CcEEEEEc---------CCeEEEEeCCCCcEEEE
Q 048178 276 DHCFKIWVMQK--KNWIKQSSVGPFI-----GIFQPLLFWKK-GAFFVESN---------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 276 ~~~l~vW~l~~--~~W~~~~~i~~~~-----~~~~~~~~~~~-g~i~~~~~---------~~~~~~yd~~t~~~~~v 335 (376)
+.+-++|+.+- +.|..+.-=+..+ .+-.-.++..+ +-|++.++ -+.+++||++...|+.+
T Consensus 343 s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 343 SLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred ccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 45668999987 7898864211111 11122222222 22444321 14599999999988876
No 149
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.86 E-value=5.8e+02 Score=24.54 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=63.4
Q ss_pred ECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEE
Q 048178 214 FDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQS 293 (376)
Q Consensus 214 ~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~ 293 (376)
=+|-++-.+.. ...+-.||+.+.. ..-.+|..... -..+.-.++.-+|+.. .++..+.+|.|...+ ...
T Consensus 357 pDgLifgtgt~-----d~~vkiwdlks~~-~~a~Fpght~~--vk~i~FsENGY~Lat~-add~~V~lwDLRKl~--n~k 425 (506)
T KOG0289|consen 357 PDGLIFGTGTP-----DGVVKIWDLKSQT-NVAKFPGHTGP--VKAISFSENGYWLATA-ADDGSVKLWDLRKLK--NFK 425 (506)
T ss_pred CCceEEeccCC-----CceEEEEEcCCcc-ccccCCCCCCc--eeEEEeccCceEEEEE-ecCCeEEEEEehhhc--ccc
Confidence 35666544433 3367889998877 45577774322 1223333444555555 225569999998733 222
Q ss_pred EECCCCce--eeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEEE
Q 048178 294 SVGPFIGI--FQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 294 ~i~~~~~~--~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~v~ 336 (376)
++ +++.. .--+.+...|..+.. ..+-.++.|+-+++.|+++.
T Consensus 426 t~-~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 426 TI-QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ee-eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 33 22221 223444555665543 44556888888899999884
No 150
>PTZ00420 coronin; Provisional
Probab=26.00 E-value=6.3e+02 Score=25.46 Aligned_cols=55 Identities=15% Similarity=0.347 Sum_probs=35.6
Q ss_pred CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCcEE
Q 048178 276 DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGELR 333 (376)
Q Consensus 276 ~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~~~ 333 (376)
+..+.||.+..+. ....+ .......-+.+..+|.++... .++.+.+||+++++..
T Consensus 147 DgtIrIWDl~tg~--~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 147 DSFVNIWDIENEK--RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCeEEEEECCCCc--EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 6889999988732 23333 222223445556688877654 5778999999988643
No 151
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=25.88 E-value=60 Score=17.08 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.6
Q ss_pred EEEecCccceeecCC
Q 048178 122 TLWNIATRESVTLPK 136 (376)
Q Consensus 122 ~V~NP~T~~~~~LP~ 136 (376)
.|||.+++.|...++
T Consensus 7 ~iwn~~~~~~vvvsE 21 (24)
T PF13018_consen 7 LIWNKARGTWVVVSE 21 (24)
T ss_pred EEEECCCCeEEEEee
Confidence 789999999987654
No 152
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.79 E-value=7.5e+02 Score=25.50 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=98.1
Q ss_pred eeeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 104 FKGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 104 ~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
+.-|.||=.+.....+.+.+.+-.|++.. +|.......... ..+.+ +|. +=+++... ...
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~~ed~d~i----ta~~l--~~d--~~~L~~a~-----------rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSGSNEDEDEI----TALAL--TPD--EEVLVTAS-----------RSQ 84 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee-cccCCccchhhh----heeee--cCC--ccEEEEee-----------ccc
Confidence 34466777776666666677788888876 665543322211 12333 322 22333332 256
Q ss_pred eEEEEEcCCC----ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-c-CCCCCCCCCc
Q 048178 184 LVTVYNLSTN----SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-Q-GPCTLESSLD 257 (376)
Q Consensus 184 ~~~vyss~t~----~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~-lP~~~~~~~~ 257 (376)
-.++|++.++ +|+.+-.-|.- .+.+++.-.-++..+- ...+.+-|..++...+- + .|..
T Consensus 85 llrv~~L~tgk~irswKa~He~Pvi------~ma~~~~g~LlAtgga---D~~v~VWdi~~~~~th~fkG~gGv------ 149 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAPVI------TMAFDPTGTLLATGGA---DGRVKVWDIKNGYCTHSFKGHGGV------ 149 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCCeE------EEEEcCCCceEEeccc---cceEEEEEeeCCEEEEEecCCCce------
Confidence 8899999886 78875433321 2233333343443332 34677777777655432 2 2322
Q ss_pred eeEEEecCe--EEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCc
Q 048178 258 VTLGIYDQS--LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 258 ~~l~~~~g~--L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~ 331 (376)
......++. .-++.....+..+.+|.+.+ .. .++.+-....-..-+++..++. ++-..++.-+..||+.+.+
T Consensus 150 Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~ 225 (775)
T KOG0319|consen 150 VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK 225 (775)
T ss_pred EEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhh
Confidence 222333222 11112223478899999886 21 1111100000134456666665 4445677778999986654
No 153
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=25.51 E-value=4.2e+02 Score=22.50 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=40.2
Q ss_pred CCcEEEEEc-----CCeEEEEeCCC--CcEEEEEEecceEEEEEeecCccccCCCCCcccccceeeEeeeeec
Q 048178 310 KGAFFVESN-----SSQLLLYEPGT--GELRDFELECCWFSIYIYTESLITLKGGESVFDFDIPWHVLGVYQT 375 (376)
Q Consensus 310 ~g~i~~~~~-----~~~~~~yd~~t--~~~~~v~~~~~~~~~~~y~~sLv~~~~~~~~~~~~~~~~~~~~~~~ 375 (376)
+|++++... ++.+++-..+. -+++++...+......+-.|..-++.-..+ .+++++++.|+.|.
T Consensus 129 dGDlvvV~~~~~a~~GdiVvA~i~g~e~TvKrl~~~g~~i~L~p~Np~~~~i~~~~~--~~~I~G~vvgv~r~ 199 (201)
T COG1974 129 DGDLVVVDPTEDAENGDIVVALIDGEEATVKRLYRDGNQILLKPENPAYPPIPVDAD--SVTILGKVVGVIRD 199 (201)
T ss_pred CCCEEEEcCCCCCCCCCEEEEEcCCCcEEEEEEEEeCCEEEEEeCCCCCCCcccCcc--ceEEEEEEEEEEec
Confidence 566555432 34455544444 367788777665666666666644444443 89999999999874
No 154
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=24.80 E-value=5.4e+02 Score=23.53 Aligned_cols=79 Identities=11% Similarity=0.246 Sum_probs=42.4
Q ss_pred CCeEEE-CceEEEEee--ecCCCCccEEEEEECC-CceEeee-cC-CCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEE
Q 048178 209 SERTYF-DGAFYWLLK--LENDNDNYVILSFHMA-EEKFQEI-QG-PCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKI 281 (376)
Q Consensus 209 ~~~v~~-~G~lywl~~--~~~~~~~~~i~~fD~~-~e~~~~i-~l-P~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~v 281 (376)
.++|.. ||.|-+-.. ...+....+++.|-.. ..+|..- -. |..+ ..+.+++. +|+|.|+.. +....-.|
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC---~~psv~EWe~gkLlM~~~-c~~g~rrV 199 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGC---SDPSVVEWEDGKLLMMTA-CDDGRRRV 199 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT----EEEEEEEE-TTEEEEEEE--TTS---E
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCCc---ceEEEEeccCCeeEEEEe-cccceEEE
Confidence 345555 888776443 2222112567777665 5777654 22 3222 35899999 889999988 33556788
Q ss_pred EEeCC--Cceee
Q 048178 282 WVMQK--KNWIK 291 (376)
Q Consensus 282 W~l~~--~~W~~ 291 (376)
|.-.| .+|..
T Consensus 200 YeS~DmG~tWte 211 (310)
T PF13859_consen 200 YESGDMGTTWTE 211 (310)
T ss_dssp EEESSTTSS-EE
T ss_pred EEEcccceehhh
Confidence 88888 77986
No 155
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.10 E-value=4.3e+02 Score=26.90 Aligned_cols=60 Identities=13% Similarity=0.319 Sum_probs=36.1
Q ss_pred ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCC
Q 048178 263 YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPG 328 (376)
Q Consensus 263 ~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~ 328 (376)
.++.+.+.+.+ +++++||.-++ =....++ |-..+.. +.+..+|+|++...++.+.+|-.+
T Consensus 229 ~~~~~Ivs~gE--DrtlriW~~~e--~~q~I~l-PttsiWs-a~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 229 LSDGLIVSTGE--DRTLRIWKKDE--CVQVITL-PTTSIWS-AKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCCeEEEecC--CceEEEeecCc--eEEEEec-CccceEE-EEEeeCCCEEEeccCceEEEEEec
Confidence 45557777765 89999999884 1122233 3322222 334557888877777766666555
No 156
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=23.92 E-value=1.2e+02 Score=20.24 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.1
Q ss_pred CeEEEEeCCCCcEEEEE
Q 048178 320 SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 320 ~~~~~yd~~t~~~~~v~ 336 (376)
-+++.||++|++++-+.
T Consensus 41 iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEE
Confidence 36999999999987663
No 157
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=23.36 E-value=7.1e+02 Score=24.36 Aligned_cols=139 Identities=10% Similarity=0.083 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCceEeccc-cCcccc-----------CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCC
Q 048178 183 SLVTVYNLSTNSWRNLKS-IDYTMR-----------LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPC 250 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~-~~~~~~-----------~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~ 250 (376)
-.+.+|++++++=+.++- +|.... ....-..++|-++-+...+ ....++....-. |++|.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG------kaFi~~~~~~~~--iqv~~ 358 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG------KAFIMRPWDGYS--IQVGK 358 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC------cEEEECCCCCee--EEcCC
Confidence 366778888887776652 222211 1112456778877777654 444554443322 33333
Q ss_pred CCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC-CCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCC
Q 048178 251 TLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG-PFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPG 328 (376)
Q Consensus 251 ~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~-~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~ 328 (376)
.... .-.++.+... .++....+...+.|+-.+.. ++.++. ++.. ..-+++..+|+ +++..+..++.++|.+
T Consensus 359 ~~~V-rY~r~~~~~e--~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~-I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 359 KGGV-RYRRIQVDPE--GDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGN-IEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCce-EEEEEccCCc--ceEEeccCCceEEEEecCCc---eEEEeeCCccc-eEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 3221 1123333333 33333233567888887763 222231 3332 23355566888 5556666789999999
Q ss_pred CCcEEEEE
Q 048178 329 TGELRDFE 336 (376)
Q Consensus 329 t~~~~~v~ 336 (376)
+++.+.+.
T Consensus 432 ngnv~~id 439 (668)
T COG4946 432 NGNVRLID 439 (668)
T ss_pred CCCeeEec
Confidence 99988874
No 158
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.15 E-value=4.5e+02 Score=21.98 Aligned_cols=186 Identities=16% Similarity=0.220 Sum_probs=87.7
Q ss_pred eecc-eEEEeecCCeEEEEecCcccee-ecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCG-IVFIEGLNNRITLWNIATRESV-TLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~G-ll~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+.+| .++.......+.+||..+++.. .+..... . ...+.+++. + +++... .....
T Consensus 60 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~-----i~~~~~~~~-~--~~~~~~----------~~~~~ 116 (289)
T cd00200 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-----Y-----VSSVAFSPD-G--RILSSS----------SRDKT 116 (289)
T ss_pred CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-----c-----EEEEEEcCC-C--CEEEEe----------cCCCe
Confidence 3444 6665665778899999875322 2221110 0 234555543 2 233321 11457
Q ss_pred EEEEEcCCCce-EeccccCccccCCCCeEEEC--ceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeE
Q 048178 185 VTVYNLSTNSW-RNLKSIDYTMRLSSERTYFD--GAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTL 260 (376)
Q Consensus 185 ~~vyss~t~~W-~~~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l 260 (376)
+.+|+.+++.- ..+.... .....+.++ +.+...+. . ...+..||+.+.+. ..+..... .-..+
T Consensus 117 i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-~----~~~i~i~d~~~~~~~~~~~~~~~----~i~~~ 183 (289)
T cd00200 117 IKVWDVETGKCLTTLRGHT----DWVNSVAFSPDGTFVASSS-Q----DGTIKLWDLRTGKCVATLTGHTG----EVNSV 183 (289)
T ss_pred EEEEECCCcEEEEEeccCC----CcEEEEEEcCcCCEEEEEc-C----CCcEEEEEccccccceeEecCcc----ccceE
Confidence 77888875432 2222110 001122222 33333332 1 23688888875432 22231110 11233
Q ss_pred EEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc-CCeEEEEeCCCCcE
Q 048178 261 GIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGEL 332 (376)
Q Consensus 261 ~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~~~~~~yd~~t~~~ 332 (376)
... +|+..++... ...+.+|.+....-. ..+........-+.+.+++.+++... ++.+..||.++++.
T Consensus 184 ~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 184 AFSPDGEKLLSSSS--DGTIKLWDLSTGKCL--GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred EECCCcCEEEEecC--CCcEEEEECCCCcee--cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 333 3334444433 678999988762222 22211111122344455677777655 78899999987543
No 159
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.98 E-value=1.4e+02 Score=15.98 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=11.4
Q ss_pred EEEeeCCcEEEEEc-CCeEEE
Q 048178 305 LLFWKKGAFFVESN-SSQLLL 324 (376)
Q Consensus 305 ~~~~~~g~i~~~~~-~~~~~~ 324 (376)
+++.++|+|++... ..++..
T Consensus 7 vav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEETTSEEEEEECCCTEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEE
Confidence 44456777887753 344443
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=22.58 E-value=3.7e+02 Score=27.14 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=56.4
Q ss_pred ccEEEEEECCCceEee----ecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeE-EEECCCCceeee
Q 048178 230 NYVILSFHMAEEKFQE----IQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQ-SSVGPFIGIFQP 304 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~~----i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~-~~i~~~~~~~~~ 304 (376)
...|.-||.+.-.|+. +.-|..... ....+.-..|...++.. .++.++..|.++..+=.-. ..++ ...-...
T Consensus 73 ~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-AifDl~wapge~~lVsa-sGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS 149 (720)
T KOG0321|consen 73 DGGIILFDTKSIVFRLEERQLKKPLAHKN-AIFDLKWAPGESLLVSA-SGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKS 149 (720)
T ss_pred CCceeeecchhhhcchhhhhhcccccccc-eeEeeccCCCceeEEEc-cCCceeeeeeeccceeecceeecc-cccccch
Confidence 3489999999888872 222332221 23455556788899988 5689999999998221111 1111 1111333
Q ss_pred EEEeeCCc-EEEE-EcCCeEEEEeCCCCc
Q 048178 305 LLFWKKGA-FFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 305 ~~~~~~g~-i~~~-~~~~~~~~yd~~t~~ 331 (376)
.|+...+. +|+. ..++.+..+|.+-+.
T Consensus 150 ~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 150 ECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred hhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 45554333 3332 346667777776665
No 161
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=22.21 E-value=4.8e+02 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.5
Q ss_pred CCeEEEEeCCCCcEEEEE
Q 048178 319 SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 319 ~~~~~~yd~~t~~~~~v~ 336 (376)
++.|+.||+.|++++.+-
T Consensus 139 GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 139 GGNLYKYNLNTGNLTELY 156 (200)
T ss_pred CCeEEEEEccCCceeEee
Confidence 577999999999988874
No 162
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.21 E-value=6.1e+02 Score=23.18 Aligned_cols=206 Identities=8% Similarity=0.058 Sum_probs=110.5
Q ss_pred eEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 111 IVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 111 ll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
.+.+... ...++|+|+.|++... +++++.. +++ . .-.|.+. +. .+...+. +. ....-.+-||
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR---HFy----G-Hg~fs~d-G~--~LytTEn--d~---~~g~G~IgVy 82 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGR---HFY----G-HGVFSPD-GR--LLYTTEN--DY---ETGRGVIGVY 82 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC---EEe----c-CEEEcCC-CC--EEEEecc--cc---CCCcEEEEEE
Confidence 3334433 5567999999999664 4444332 221 0 1122222 22 1111111 11 1346688899
Q ss_pred EcCCCceEeccccCc------ccc---CCCCeEEECceEEEEeeecCC-----CCccEEEEEECCCceE-eeecCCCCCC
Q 048178 189 NLSTNSWRNLKSIDY------TMR---LSSERTYFDGAFYWLLKLEND-----NDNYVILSFHMAEEKF-QEIQGPCTLE 253 (376)
Q Consensus 189 ss~t~~W~~~~~~~~------~~~---~~~~~v~~~G~lywl~~~~~~-----~~~~~i~~fD~~~e~~-~~i~lP~~~~ 253 (376)
+.. +..+.++..+. .+. ....=|..||-+.--...+.. .+.-+++-+|..+... ....||+...
T Consensus 83 d~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 83 DAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred ECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 998 44555443322 111 222356777777544222211 1456788898888775 5558888765
Q ss_pred CCCceeEEEe-cCeEEEEEec-C----CCCEEEEEEeCCCceeeEEEEC-----CCCceeeeEEEeeCCcEEEE--EcCC
Q 048178 254 SSLDVTLGIY-DQSLSLLLLD-T----VDHCFKIWVMQKKNWIKQSSVG-----PFIGIFQPLLFWKKGAFFVE--SNSS 320 (376)
Q Consensus 254 ~~~~~~l~~~-~g~L~l~~~~-~----~~~~l~vW~l~~~~W~~~~~i~-----~~~~~~~~~~~~~~g~i~~~--~~~~ 320 (376)
...-..|++- +|.+++..+. . ...-+-++..++ . .....+. .+..+...+++..+|..+.. ...+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-A-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-c-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 4445667765 4555555552 1 112344444443 1 2222220 12335667888888876544 3567
Q ss_pred eEEEEeCCCCcEEEE
Q 048178 321 QLLLYEPGTGELRDF 335 (376)
Q Consensus 321 ~~~~yd~~t~~~~~v 335 (376)
.+.+||..++++...
T Consensus 240 ~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 240 RVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEEECCCCCEeec
Confidence 899999999988765
No 163
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=21.93 E-value=3.4e+02 Score=23.75 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=37.3
Q ss_pred eecceEEEeecCCeEEEEecCccceeec--CCCCCCCCCccccccceEEEeeeCCCCCeEEEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTL--PKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVL 167 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~ 167 (376)
..+|.|.-......+|-.||.|+.--.+ .+..... .. ..+++-|+|..+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al-~g-----~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL-SG-----TAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccc-cC-----ceEEEecCcccCcEEEEc
Confidence 4577776666777889999999997666 2222221 11 146788888888877774
No 164
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=21.42 E-value=6.3e+02 Score=23.08 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=51.6
Q ss_pred CeEEE-CceEEEEeeecCCC--CccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeC
Q 048178 210 ERTYF-DGAFYWLLKLENDN--DNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQ 285 (376)
Q Consensus 210 ~~v~~-~G~lywl~~~~~~~--~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~ 285 (376)
.++.+ +|.+.......... ....++..|-..++|+....+..........++++ +|+|.++..........+..-+
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~ 229 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESR 229 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEc
Confidence 35656 48877665433211 13345556666788986544433122245788888 8888877763214566666666
Q ss_pred C--CceeeEEEE
Q 048178 286 K--KNWIKQSSV 295 (376)
Q Consensus 286 ~--~~W~~~~~i 295 (376)
+ .+|......
T Consensus 230 D~G~tWs~~~~~ 241 (351)
T cd00260 230 DMGTTWTEALGT 241 (351)
T ss_pred CCCcCcccCcCC
Confidence 6 889987544
No 165
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=20.72 E-value=4.3e+02 Score=25.01 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=54.9
Q ss_pred ccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCCC--CEEEEEEeCC---CceeeEEEECCCCceee
Q 048178 230 NYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTVD--HCFKIWVMQK---KNWIKQSSVGPFIGIFQ 303 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~--~~l~vW~l~~---~~W~~~~~i~~~~~~~~ 303 (376)
...|+..|+.+.+.+.+ .-..-.. +.+.--.+..+.+.|.+..- -.-.||.++. ..|....+. +......
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlg---H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gH 242 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLG---HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGH 242 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EE---EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEE
T ss_pred CceEEEEECCCCceeEEEecCcccc---CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCccccc
Confidence 46799999999888766 3221111 12222235566666653222 2347899988 445444444 4443455
Q ss_pred eEEEeeCCc-EEEEE--c---CCeEEEEeCCCCcEEEEEEecc-eEEEEEeecCcc
Q 048178 304 PLLFWKKGA-FFVES--N---SSQLLLYEPGTGELRDFELECC-WFSIYIYTESLI 352 (376)
Q Consensus 304 ~~~~~~~g~-i~~~~--~---~~~~~~yd~~t~~~~~v~~~~~-~~~~~~y~~sLv 352 (376)
.+... +|. |++.. . ...+..||++|.+-+.+..... ......+-.+|+
T Consensus 243 Efw~~-DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~ 297 (386)
T PF14583_consen 243 EFWVP-DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLF 297 (386)
T ss_dssp EEE-T-TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEE
T ss_pred ccccC-CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEE
Confidence 55533 565 54432 2 2359999999987776533222 333333444554
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.52 E-value=5.2e+02 Score=25.99 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=50.8
Q ss_pred ccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe
Q 048178 230 NYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW 308 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~ 308 (376)
...++..+++...-+ .|..... ...+-+...+. -+++... ...+.||.|-..+=+++.- +..-...-+++.
T Consensus 545 ~~~VliHQLSK~~sQ---~PF~ksk-G~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~--tg~kwiS~msih 616 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQ---SPFRKSK-GLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLL--TGSKWISSMSIH 616 (733)
T ss_pred cceEEEEeccccccc---CchhhcC-CceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHh--cCCeeeeeeeec
Confidence 456777777765443 3332211 12344555665 3333332 4677888776522222211 111124446667
Q ss_pred eCCc-EEEEEcCCeEEEEeCCCC
Q 048178 309 KKGA-FFVESNSSQLLLYEPGTG 330 (376)
Q Consensus 309 ~~g~-i~~~~~~~~~~~yd~~t~ 330 (376)
.+|+ +++...++++++||+.-.
T Consensus 617 p~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccC
Confidence 7676 777788899999998754
No 167
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=20.20 E-value=1.3e+02 Score=21.44 Aligned_cols=19 Identities=11% Similarity=0.403 Sum_probs=16.5
Q ss_pred CeEEEEeCCCCcEEEEEEe
Q 048178 320 SQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 320 ~~~~~yd~~t~~~~~v~~~ 338 (376)
..+.+||.+.+.|+.+.+.
T Consensus 49 ~s~~yfDve~~~WRSFk~d 67 (83)
T PF10902_consen 49 TSVRYFDVEKKGWRSFKID 67 (83)
T ss_pred ceEEEEEeccCceeeeehe
Confidence 4599999999999998875
Done!