Query 048178
Match_columns 376
No_of_seqs 137 out of 1558
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:06:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asc_A Kelch repeat and BTB do 99.5 3E-11 1E-15 109.7 26.8 196 120-335 68-283 (315)
2 1zgk_A Kelch-like ECH-associat 99.5 5.4E-11 1.8E-15 107.6 28.4 209 106-337 67-295 (308)
3 3ii7_A Kelch-like protein 7; p 99.5 3.4E-11 1.2E-15 108.7 25.0 210 106-337 52-280 (306)
4 2vpj_A Kelch-like protein 12; 99.4 5.9E-11 2E-15 106.9 24.3 208 106-336 59-285 (301)
5 2woz_A Kelch repeat and BTB do 99.4 1.1E-10 3.9E-15 106.0 26.0 194 121-335 80-293 (318)
6 2xn4_A Kelch-like protein 2; s 99.4 1.2E-10 4E-15 105.0 25.9 208 106-336 58-283 (302)
7 3ii7_A Kelch-like protein 7; p 99.4 3.7E-10 1.2E-14 101.9 25.6 215 118-356 23-255 (306)
8 2vpj_A Kelch-like protein 12; 99.3 1E-09 3.4E-14 98.7 26.8 215 119-356 31-261 (301)
9 2xn4_A Kelch-like protein 2; s 99.3 6.7E-10 2.3E-14 100.0 24.3 215 119-356 30-259 (302)
10 1zgk_A Kelch-like ECH-associat 99.3 4.5E-10 1.5E-14 101.5 22.5 219 118-356 38-270 (308)
11 4asc_A Kelch repeat and BTB do 99.2 2.4E-09 8.1E-14 97.0 23.3 202 119-337 13-229 (315)
12 2e31_A FBS1, F-box only protei 99.1 1.6E-11 5.5E-16 108.3 4.0 53 1-53 46-99 (297)
13 2woz_A Kelch repeat and BTB do 99.1 6.2E-09 2.1E-13 94.4 21.3 230 109-356 15-261 (318)
14 2uvk_A YJHT; unknown function, 99.1 7.9E-09 2.7E-13 95.2 21.9 217 105-337 15-302 (357)
15 2uvk_A YJHT; unknown function, 99.1 2.6E-08 9E-13 91.7 23.5 152 182-336 167-349 (357)
16 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 3.4E-11 1.2E-15 78.3 2.6 45 3-47 6-50 (53)
17 2zwa_A Leucine carboxyl methyl 99.0 2.1E-08 7.1E-13 100.7 20.7 211 108-338 396-644 (695)
18 2ovr_B FBW7, F-BOX/WD repeat p 98.9 7E-06 2.4E-10 77.5 31.5 284 5-333 18-312 (445)
19 3v7d_B Cell division control p 98.9 3.5E-06 1.2E-10 79.9 28.8 287 7-333 16-345 (464)
20 1k3i_A Galactose oxidase precu 98.6 1.2E-06 4.2E-11 87.4 17.5 215 106-336 250-504 (656)
21 1p22_A F-BOX/WD-repeat protein 98.6 2.3E-05 7.9E-10 73.7 25.0 284 7-333 12-329 (435)
22 2zwa_A Leucine carboxyl methyl 98.4 4.7E-06 1.6E-10 83.6 14.5 172 182-356 411-615 (695)
23 1k3i_A Galactose oxidase precu 98.2 7.8E-06 2.7E-10 81.5 11.2 145 185-335 168-329 (656)
24 3l2o_B F-box only protein 4; s 98.0 1.3E-06 4.4E-11 76.3 0.8 52 4-55 3-54 (312)
25 2ast_B S-phase kinase-associat 97.5 3.4E-05 1.1E-09 70.0 1.8 42 4-45 7-48 (336)
26 2p1m_B Transport inhibitor res 97.0 0.00016 5.4E-09 70.9 1.2 39 1-39 1-40 (594)
27 3ogk_B Coronatine-insensitive 96.3 0.00082 2.8E-08 65.8 1.0 34 6-39 13-47 (592)
28 3mbr_X Glutamine cyclotransfer 95.9 0.33 1.1E-05 41.4 15.1 114 211-337 25-142 (243)
29 3jrp_A Fusion protein of prote 95.6 0.64 2.2E-05 41.4 16.8 140 182-331 78-242 (379)
30 3dsm_A Uncharacterized protein 95.4 1.3 4.5E-05 39.2 22.0 196 109-337 2-221 (328)
31 3nol_A Glutamine cyclotransfer 95.1 0.59 2E-05 40.2 13.9 112 213-337 50-164 (262)
32 2z2n_A Virginiamycin B lyase; 94.7 1.8 6.1E-05 37.0 21.2 188 107-333 107-299 (299)
33 3ei3_B DNA damage-binding prot 94.5 2.5 8.7E-05 37.8 21.0 190 111-332 88-285 (383)
34 3q7m_A Lipoprotein YFGL, BAMB; 94.5 2.6 8.9E-05 37.8 19.5 134 182-334 197-342 (376)
35 2iwa_A Glutamine cyclotransfer 94.5 1.1 3.7E-05 38.8 14.0 110 216-337 32-144 (266)
36 3jro_A Fusion protein of prote 94.4 2.3 7.8E-05 42.6 18.4 192 111-330 23-239 (753)
37 4gqb_B Methylosome protein 50; 93.9 3.3 0.00011 36.9 18.1 197 107-335 91-295 (344)
38 3hfq_A Uncharacterized protein 93.3 3.7 0.00012 36.2 16.1 142 184-335 19-178 (347)
39 3q7m_A Lipoprotein YFGL, BAMB; 92.9 5 0.00017 35.9 24.0 190 105-334 99-301 (376)
40 3e5z_A Putative gluconolactona 92.3 4.9 0.00017 34.5 23.2 197 111-339 42-256 (296)
41 3dsm_A Uncharacterized protein 92.1 5.9 0.0002 34.9 23.0 202 103-337 88-310 (328)
42 3nok_A Glutaminyl cyclase; bet 92.0 1.8 6.3E-05 37.2 11.4 111 211-337 59-173 (268)
43 3bws_A Protein LP49; two-domai 91.5 7.9 0.00027 35.1 21.3 192 107-334 178-395 (433)
44 1l0q_A Surface layer protein; 91.3 7.6 0.00026 34.6 23.3 187 107-333 40-237 (391)
45 2hqs_A Protein TOLB; TOLB, PAL 91.1 8.9 0.0003 35.0 22.1 185 119-338 203-396 (415)
46 3g4e_A Regucalcin; six bladed 91.1 6.9 0.00024 33.7 22.0 207 109-348 24-249 (297)
47 1l0q_A Surface layer protein; 90.7 8.7 0.0003 34.2 21.9 184 111-334 3-194 (391)
48 4e54_B DNA damage-binding prot 90.6 10 0.00035 34.7 17.5 57 276-334 377-435 (435)
49 4e54_B DNA damage-binding prot 90.1 8.2 0.00028 35.3 15.0 191 111-332 134-330 (435)
50 1gxr_A ESG1, transducin-like e 89.8 8.9 0.00031 33.0 24.3 196 107-335 60-261 (337)
51 1p22_A F-BOX/WD-repeat protein 89.6 12 0.00041 34.1 19.2 183 108-331 182-367 (435)
52 1q7f_A NHL, brain tumor CG1071 89.1 9.6 0.00033 32.3 24.5 202 107-338 38-247 (286)
53 3dwl_C Actin-related protein 2 89.1 5.9 0.0002 35.1 12.9 185 116-332 30-239 (377)
54 2aq5_A Coronin-1A; WD40 repeat 89.1 12 0.00042 33.5 19.9 203 110-336 95-308 (402)
55 2pm9_A Protein WEB1, protein t 88.4 13 0.00046 33.1 17.4 197 110-331 127-339 (416)
56 3v9f_A Two-component system se 88.1 23 0.00078 35.4 23.0 194 109-336 417-618 (781)
57 1ri6_A Putative isomerase YBHE 87.9 12 0.00043 32.2 16.1 141 182-335 14-167 (343)
58 1k8k_C P40, ARP2/3 complex 41 87.7 14 0.00047 32.4 20.2 192 111-333 22-237 (372)
59 2dg1_A DRP35, lactonase; beta 87.6 8.8 0.0003 33.4 12.8 113 215-335 55-177 (333)
60 3fm0_A Protein CIAO1; WDR39,SG 87.3 15 0.0005 32.4 18.9 183 116-327 35-223 (345)
61 3vgz_A Uncharacterized protein 86.9 15 0.00051 31.9 29.9 203 107-334 98-308 (353)
62 1k8k_C P40, ARP2/3 complex 41 86.7 16 0.00053 32.0 20.8 68 264-335 213-282 (372)
63 3mkq_A Coatomer beta'-subunit; 86.5 27 0.00092 34.6 24.3 191 107-334 64-264 (814)
64 3scy_A Hypothetical bacterial 86.5 16 0.00056 32.0 16.2 117 215-336 221-346 (361)
65 4g56_B MGC81050 protein; prote 86.4 17 0.00058 32.2 17.6 196 107-334 103-306 (357)
66 1nir_A Nitrite reductase; hemo 86.4 23 0.0008 33.7 19.3 194 107-334 146-360 (543)
67 3sjl_D Methylamine dehydrogena 85.6 10 0.00034 34.6 12.1 118 215-339 237-374 (386)
68 3bg1_A Protein SEC13 homolog; 85.4 18 0.0006 31.4 15.7 54 276-329 188-247 (316)
69 2qc5_A Streptogramin B lactona 85.2 16 0.00055 30.8 19.4 192 106-337 69-267 (300)
70 1pjx_A Dfpase, DIISOPROPYLFLUO 85.0 17 0.00059 31.0 22.4 195 117-338 44-266 (314)
71 3lrv_A PRE-mRNA-splicing facto 84.9 19 0.00065 31.4 17.6 198 103-334 88-299 (343)
72 1rwi_B Serine/threonine-protei 84.9 16 0.00054 30.4 20.1 186 107-331 75-266 (270)
73 1q7f_A NHL, brain tumor CG1071 84.7 17 0.00058 30.7 25.2 188 107-329 86-280 (286)
74 4aez_A CDC20, WD repeat-contai 84.3 23 0.00077 31.8 26.1 193 105-333 99-297 (401)
75 4a2l_A BT_4663, two-component 83.6 38 0.0013 33.8 22.5 196 108-336 415-621 (795)
76 1ri6_A Putative isomerase YBHE 83.4 21 0.00071 30.7 24.9 148 182-336 150-317 (343)
77 3mmy_A MRNA export factor; mRN 83.4 22 0.00074 30.9 20.5 189 109-333 97-308 (368)
78 3no2_A Uncharacterized protein 83.3 21 0.0007 30.5 16.2 191 109-336 5-203 (276)
79 1rwi_B Serine/threonine-protei 83.3 19 0.00063 30.0 19.2 191 106-336 31-229 (270)
80 2ojh_A Uncharacterized protein 82.3 20 0.00069 29.7 17.3 197 107-336 50-265 (297)
81 1r5m_A SIR4-interacting protei 81.4 28 0.00097 30.8 18.3 187 105-329 213-425 (425)
82 2fp8_A Strictosidine synthase; 81.3 26 0.00089 30.3 18.0 98 231-338 165-278 (322)
83 3hfq_A Uncharacterized protein 81.3 26 0.00091 30.4 28.6 151 182-337 161-327 (347)
84 3dwl_C Actin-related protein 2 81.1 3.7 0.00013 36.5 7.3 139 182-330 32-178 (377)
85 2dg1_A DRP35, lactonase; beta 81.0 26 0.0009 30.2 20.7 205 107-338 53-272 (333)
86 4gga_A P55CDC, cell division c 80.8 32 0.0011 31.0 23.9 195 107-335 114-316 (420)
87 2aq5_A Coronin-1A; WD40 repeat 80.6 31 0.0011 30.8 20.4 187 117-331 55-256 (402)
88 3vl1_A 26S proteasome regulato 80.4 32 0.0011 30.7 23.1 192 110-337 110-332 (420)
89 2mad_H Methylamine dehydrogena 80.3 24 0.00083 31.7 12.6 55 280-335 299-356 (373)
90 3u4y_A Uncharacterized protein 80.2 27 0.00094 29.9 22.0 189 109-332 9-210 (331)
91 1yfq_A Cell cycle arrest prote 79.4 29 0.001 29.8 21.7 189 111-333 71-286 (342)
92 3odt_A Protein DOA1; ubiquitin 79.1 28 0.00095 29.3 21.9 96 230-334 204-301 (313)
93 1n7d_A LDL receptor, low-densi 78.3 19 0.00066 35.6 12.0 139 182-334 474-619 (699)
94 3odt_A Protein DOA1; ubiquitin 77.6 31 0.0011 29.0 23.9 188 107-333 27-218 (313)
95 3fm0_A Protein CIAO1; WDR39,SG 77.6 36 0.0012 29.8 18.0 144 182-334 37-186 (345)
96 3bws_A Protein LP49; two-domai 77.6 39 0.0013 30.2 19.4 188 110-329 224-432 (433)
97 3jrp_A Fusion protein of prote 77.4 35 0.0012 29.6 21.1 197 110-336 70-295 (379)
98 4aow_A Guanine nucleotide-bind 77.4 33 0.0011 29.3 18.8 133 182-331 194-339 (340)
99 3k26_A Polycomb protein EED; W 77.1 35 0.0012 29.4 18.1 191 111-331 87-320 (366)
100 1got_B GT-beta; complex (GTP-b 76.8 37 0.0013 29.5 21.5 95 231-332 164-260 (340)
101 3jro_A Fusion protein of prote 76.6 52 0.0018 32.6 14.8 96 231-330 31-133 (753)
102 1nir_A Nitrite reductase; hemo 75.9 55 0.0019 31.0 22.1 201 109-332 236-461 (543)
103 3v65_B Low-density lipoprotein 75.5 46 0.0016 29.9 19.9 193 107-336 125-326 (386)
104 2z2n_A Virginiamycin B lyase; 75.0 36 0.0012 28.5 24.1 194 106-338 64-263 (299)
105 2ynn_A Coatomer subunit beta'; 74.2 40 0.0014 28.7 22.5 187 110-334 68-264 (304)
106 3g4e_A Regucalcin; six bladed 74.0 41 0.0014 28.7 15.4 102 215-330 24-140 (297)
107 4a11_B DNA excision repair pro 73.1 48 0.0016 29.1 21.2 99 231-333 267-369 (408)
108 3e5z_A Putative gluconolactona 72.8 42 0.0015 28.3 13.9 108 215-335 38-167 (296)
109 2hqs_A Protein TOLB; TOLB, PAL 72.5 55 0.0019 29.6 18.6 184 119-336 159-351 (415)
110 2vdu_B TRNA (guanine-N(7)-)-me 72.3 57 0.002 29.6 21.8 68 265-336 210-279 (450)
111 3v7d_B Cell division control p 71.9 58 0.002 29.5 26.1 193 107-333 171-385 (464)
112 2ovr_B FBW7, F-BOX/WD repeat p 71.2 59 0.002 29.3 23.7 109 211-333 284-395 (445)
113 3dr2_A Exported gluconolactona 71.1 48 0.0017 28.3 18.2 102 231-338 169-276 (305)
114 3dm0_A Maltose-binding peripla 71.0 79 0.0027 30.7 22.3 95 231-333 541-636 (694)
115 3vl1_A 26S proteasome regulato 71.0 56 0.0019 29.0 20.6 137 182-329 268-419 (420)
116 1kv9_A Type II quinohemoprotei 70.9 41 0.0014 33.0 12.2 114 209-334 60-192 (668)
117 4gga_A P55CDC, cell division c 70.6 60 0.0021 29.1 14.2 88 244-334 95-183 (420)
118 3hrp_A Uncharacterized protein 70.4 47 0.0016 30.1 11.8 108 215-335 141-255 (409)
119 4g56_B MGC81050 protein; prote 70.4 56 0.0019 28.7 17.9 188 107-330 148-344 (357)
120 3tc9_A Hypothetical hydrolase; 70.2 66 0.0023 29.4 14.5 110 215-335 149-263 (430)
121 2oiz_A Aromatic amine dehydrog 69.9 59 0.002 28.8 12.7 67 278-348 287-356 (361)
122 2hz6_A Endoplasmic reticulum t 69.7 34 0.0012 30.5 10.6 179 108-333 8-196 (369)
123 2ojh_A Uncharacterized protein 69.4 46 0.0016 27.4 20.9 184 118-336 21-213 (297)
124 1gxr_A ESG1, transducin-like e 69.2 52 0.0018 27.9 24.5 188 108-334 107-301 (337)
125 2qc5_A Streptogramin B lactona 68.9 50 0.0017 27.5 21.8 193 104-336 25-224 (300)
126 2ghs_A AGR_C_1268P; regucalcin 68.5 59 0.002 28.2 14.2 105 215-335 60-174 (326)
127 4aez_A CDC20, WD repeat-contai 68.4 65 0.0022 28.6 22.1 110 215-335 228-342 (401)
128 2pbi_B Guanine nucleotide-bind 67.7 63 0.0022 28.3 22.4 182 111-326 168-354 (354)
129 1r5m_A SIR4-interacting protei 67.6 65 0.0022 28.3 24.8 96 231-334 227-324 (425)
130 3sfz_A APAF-1, apoptotic pepti 67.2 1.3E+02 0.0043 31.6 22.0 193 107-335 624-834 (1249)
131 2ad6_A Methanol dehydrogenase 67.1 54 0.0018 31.4 11.9 114 209-334 56-190 (571)
132 3dr2_A Exported gluconolactona 66.8 31 0.0011 29.5 9.4 109 215-336 55-185 (305)
133 3vgz_A Uncharacterized protein 66.5 62 0.0021 27.7 21.2 182 118-334 68-267 (353)
134 2p4o_A Hypothetical protein; p 66.3 62 0.0021 27.7 14.0 104 215-331 42-149 (306)
135 3m0c_C LDL receptor, low-densi 66.0 1.1E+02 0.0039 30.6 25.0 173 152-351 474-656 (791)
136 4ery_A WD repeat-containing pr 65.9 61 0.0021 27.4 22.8 185 112-334 38-228 (312)
137 1jmx_B Amine dehydrogenase; ox 65.8 51 0.0017 28.2 10.8 106 215-331 10-136 (349)
138 3i2n_A WD repeat-containing pr 65.4 65 0.0022 27.6 21.1 136 182-330 189-354 (357)
139 1sq9_A Antiviral protein SKI8; 65.3 71 0.0024 28.0 21.5 144 182-331 206-397 (397)
140 1kb0_A Quinohemoprotein alcoho 65.2 45 0.0015 32.7 11.1 113 209-333 71-203 (677)
141 1jmx_B Amine dehydrogenase; ox 64.5 67 0.0023 27.4 14.7 142 182-334 20-180 (349)
142 1yiq_A Quinohemoprotein alcoho 64.2 63 0.0022 31.8 12.0 113 210-333 65-196 (689)
143 3fvz_A Peptidyl-glycine alpha- 62.7 75 0.0026 27.4 20.8 188 120-334 70-282 (329)
144 3v64_C Agrin; beta propeller, 62.6 82 0.0028 27.8 21.6 193 107-336 82-283 (349)
145 3f3f_A Nucleoporin SEH1; struc 61.6 73 0.0025 26.9 19.2 65 265-331 182-251 (351)
146 3nok_A Glutaminyl cyclase; bet 60.9 79 0.0027 27.0 13.1 134 184-338 76-220 (268)
147 2vdu_B TRNA (guanine-N(7)-)-me 60.9 97 0.0033 28.0 22.3 142 182-333 219-397 (450)
148 4a11_B DNA excision repair pro 60.8 85 0.0029 27.4 19.0 95 231-332 166-279 (408)
149 1qks_A Cytochrome CD1 nitrite 60.5 1.2E+02 0.0041 29.0 21.9 197 109-337 166-382 (567)
150 1got_B GT-beta; complex (GTP-b 60.3 84 0.0029 27.1 21.3 183 107-326 152-340 (340)
151 3c75_H MADH, methylamine dehyd 60.0 1.1E+02 0.0036 28.2 12.9 68 265-333 331-406 (426)
152 2ghs_A AGR_C_1268P; regucalcin 59.4 87 0.003 27.0 22.4 205 109-348 60-279 (326)
153 4hw6_A Hypothetical protein, I 59.0 94 0.0032 28.4 11.6 110 210-332 142-262 (433)
154 3ow8_A WD repeat-containing pr 59.0 87 0.003 26.9 24.0 183 113-334 96-284 (321)
155 3hrp_A Uncharacterized protein 58.8 1E+02 0.0036 27.8 23.9 198 107-336 139-361 (409)
156 3mmy_A MRNA export factor; mRN 58.7 86 0.003 26.8 12.9 70 265-336 54-124 (368)
157 1sq9_A Antiviral protein SKI8; 58.7 93 0.0032 27.2 22.4 101 230-333 206-326 (397)
158 4a2l_A BT_4663, two-component 58.0 1.5E+02 0.0052 29.4 25.1 202 104-336 220-443 (795)
159 1npe_A Nidogen, entactin; glyc 58.0 80 0.0027 26.1 24.1 195 106-337 44-247 (267)
160 3iz6_a 40S ribosomal protein R 57.8 99 0.0034 27.2 21.2 192 111-331 172-377 (380)
161 2pm7_B Protein transport prote 57.4 87 0.003 26.4 13.0 64 265-330 67-133 (297)
162 3k26_A Polycomb protein EED; W 57.0 92 0.0032 26.6 20.7 63 265-329 299-366 (366)
163 4ery_A WD repeat-containing pr 56.3 91 0.0031 26.3 22.3 183 111-328 121-311 (312)
164 2pm7_B Protein transport prote 56.3 91 0.0031 26.3 19.9 63 266-330 171-239 (297)
165 3mbr_X Glutamine cyclotransfer 56.2 89 0.0031 26.2 18.2 138 182-338 42-189 (243)
166 1yr2_A Prolyl oligopeptidase; 56.0 1.6E+02 0.0054 28.9 18.5 141 182-335 293-447 (741)
167 3v65_B Low-density lipoprotein 55.6 1.1E+02 0.0039 27.2 19.7 157 151-335 118-283 (386)
168 1vyh_C Platelet-activating fac 55.4 1.1E+02 0.0039 27.2 21.2 68 265-336 308-377 (410)
169 4ggc_A P55CDC, cell division c 55.3 92 0.0031 26.0 14.9 59 276-334 44-103 (318)
170 3m0c_C LDL receptor, low-densi 55.1 1.8E+02 0.006 29.2 20.6 114 210-336 474-596 (791)
171 3lrv_A PRE-mRNA-splicing facto 54.8 1E+02 0.0035 26.5 18.5 95 231-331 149-246 (343)
172 3zwl_B Eukaryotic translation 54.0 1E+02 0.0035 26.3 24.3 68 264-334 186-254 (369)
173 3v9f_A Two-component system se 53.7 1.8E+02 0.006 28.8 23.0 198 108-336 322-531 (781)
174 3frx_A Guanine nucleotide-bind 53.6 1.1E+02 0.0036 26.2 22.3 94 231-332 176-270 (319)
175 3scy_A Hypothetical bacterial 53.5 1.1E+02 0.0038 26.4 20.0 146 183-336 75-249 (361)
176 3u4y_A Uncharacterized protein 53.2 1E+02 0.0036 26.0 19.8 181 120-335 109-310 (331)
177 3mkq_A Coatomer beta'-subunit; 52.7 1.8E+02 0.006 28.5 23.1 185 111-333 27-221 (814)
178 3sov_A LRP-6, low-density lipo 51.7 1.2E+02 0.0041 26.3 18.9 139 182-336 100-246 (318)
179 2p4o_A Hypothetical protein; p 51.6 1.1E+02 0.0038 26.0 20.5 189 108-330 41-243 (306)
180 4gqb_B Methylosome protein 50; 51.4 1.2E+02 0.0042 26.4 19.2 189 107-332 136-334 (344)
181 2hz6_A Endoplasmic reticulum t 51.2 3.6 0.00012 37.1 0.4 27 210-242 4-30 (369)
182 2xyi_A Probable histone-bindin 50.9 1.4E+02 0.0047 26.8 16.0 193 111-332 196-413 (430)
183 2fp8_A Strictosidine synthase; 50.8 1.2E+02 0.004 26.0 15.1 97 182-286 206-313 (322)
184 3gre_A Serine/threonine-protei 50.3 1.4E+02 0.0047 26.6 17.8 99 231-334 192-297 (437)
185 1pgu_A Actin interacting prote 50.0 1.6E+02 0.0056 27.4 24.0 137 182-330 466-615 (615)
186 3iz6_a 40S ribosomal protein R 49.6 1.4E+02 0.0046 26.3 19.2 100 231-334 180-285 (380)
187 1erj_A Transcriptional repress 49.4 1.4E+02 0.0048 26.4 24.7 194 107-333 132-345 (393)
188 3bg1_A Protein SEC13 homolog; 48.9 1.2E+02 0.0042 25.7 19.0 68 266-336 229-301 (316)
189 3v64_C Agrin; beta propeller, 48.8 1.4E+02 0.0047 26.2 19.0 156 152-335 76-240 (349)
190 2be1_A Serine/threonine-protei 47.7 63 0.0022 28.7 8.0 27 309-335 110-136 (339)
191 1pgu_A Actin interacting prote 45.2 1.9E+02 0.0066 26.9 21.6 66 264-333 171-242 (615)
192 2bkl_A Prolyl endopeptidase; m 45.0 2.2E+02 0.0077 27.5 21.8 143 182-336 251-404 (695)
193 1pby_B Quinohemoprotein amine 44.9 1.4E+02 0.0047 25.1 13.5 100 230-334 10-129 (337)
194 3nol_A Glutamine cyclotransfer 44.4 1.5E+02 0.005 25.2 18.3 138 182-338 64-211 (262)
195 4h5i_A Guanine nucleotide-exch 43.6 1.7E+02 0.0057 25.6 20.5 193 107-330 142-344 (365)
196 1yfq_A Cell cycle arrest prote 43.2 1.5E+02 0.0051 25.0 11.6 72 264-337 22-97 (342)
197 4aow_A Guanine nucleotide-bind 42.6 1.5E+02 0.0052 24.9 22.3 95 231-333 195-290 (340)
198 2xbg_A YCF48-like protein; pho 42.3 1.7E+02 0.0057 25.3 15.1 142 182-337 12-159 (327)
199 3f3f_A Nucleoporin SEH1; struc 42.1 1.5E+02 0.0052 24.7 24.9 35 302-336 309-345 (351)
200 3i2n_A WD repeat-containing pr 41.7 1.6E+02 0.0055 24.9 22.3 136 182-330 138-292 (357)
201 2hes_X YDR267CP; beta-propelle 40.9 1.7E+02 0.0058 25.0 18.6 65 263-329 259-328 (330)
202 2ymu_A WD-40 repeat protein; u 40.6 2.3E+02 0.0077 26.3 24.0 97 232-337 408-506 (577)
203 3iuj_A Prolyl endopeptidase; h 39.5 2.7E+02 0.0094 27.0 19.8 143 183-336 259-412 (693)
204 3c5m_A Oligogalacturonate lyas 39.1 1.9E+02 0.0065 25.0 11.7 145 182-336 167-336 (396)
205 3hxj_A Pyrrolo-quinoline quino 38.7 1.8E+02 0.006 24.5 10.9 31 306-336 221-251 (330)
206 1evh_A WH1 domain, protein (ME 37.6 59 0.002 23.6 5.1 42 119-169 11-52 (112)
207 3zwl_B Eukaryotic translation 37.4 1.9E+02 0.0065 24.5 22.9 95 231-334 197-309 (369)
208 1ijq_A LDL receptor, low-densi 36.9 2E+02 0.0068 24.6 22.9 193 106-335 38-245 (316)
209 3ei3_B DNA damage-binding prot 36.7 2.1E+02 0.0071 24.8 21.0 136 182-329 95-236 (383)
210 3dm0_A Maltose-binding peripla 36.5 3E+02 0.01 26.5 20.8 181 116-328 491-692 (694)
211 3sfz_A APAF-1, apoptotic pepti 36.0 3.9E+02 0.013 27.8 22.7 194 107-333 666-875 (1249)
212 2dk7_A Transcription elongatio 35.7 34 0.0012 22.7 3.1 19 313-331 23-41 (73)
213 1ddw_A GLGF-domain protein hom 33.6 70 0.0024 23.5 4.9 39 119-168 11-50 (120)
214 3gre_A Serine/threonine-protei 33.0 2.4E+02 0.0083 24.9 9.9 67 264-333 181-249 (437)
215 1ijq_A LDL receptor, low-densi 32.7 2.3E+02 0.008 24.2 20.3 177 120-335 11-201 (316)
216 1flg_A Protein (quinoprotein e 32.6 3.3E+02 0.011 25.9 14.5 116 209-334 62-198 (582)
217 1npe_A Nidogen, entactin; glyc 32.6 2.1E+02 0.007 23.5 18.7 139 182-335 57-204 (267)
218 3p5b_L Low density lipoprotein 32.2 2.7E+02 0.0094 24.8 24.8 173 152-351 162-344 (400)
219 1n7d_A LDL receptor, low-densi 31.8 2E+02 0.0069 28.2 9.5 61 182-247 561-622 (699)
220 3p5b_L Low density lipoprotein 31.2 2.9E+02 0.0098 24.7 18.6 109 215-336 170-284 (400)
221 2z3z_A Dipeptidyl aminopeptida 30.2 3.7E+02 0.013 25.7 20.1 207 107-335 129-397 (706)
222 2lyd_A Decapping protein 1; DC 29.7 52 0.0018 24.8 3.7 28 313-340 31-58 (134)
223 1kv9_A Type II quinohemoprotei 29.4 4E+02 0.014 25.8 13.4 123 108-245 65-194 (668)
224 2iwa_A Glutamine cyclotransfer 29.3 2.6E+02 0.0089 23.6 18.3 138 182-338 43-191 (266)
225 1mda_H Methylamine dehydrogena 28.7 3.1E+02 0.011 24.3 9.9 53 281-336 298-354 (368)
226 3ott_A Two-component system se 27.8 4.4E+02 0.015 25.7 13.0 100 220-335 77-180 (758)
227 3ow8_A WD repeat-containing pr 27.4 2.8E+02 0.0097 23.5 21.8 130 182-327 185-319 (321)
228 2pm9_A Protein WEB1, protein t 26.8 3.1E+02 0.011 23.7 20.2 101 231-332 188-297 (416)
229 1w6s_A Methanol dehydrogenase 26.4 4.3E+02 0.015 25.3 12.7 115 209-334 56-196 (599)
230 3fvz_A Peptidyl-glycine alpha- 25.5 3.1E+02 0.011 23.3 19.1 161 109-286 154-322 (329)
231 4ggc_A P55CDC, cell division c 25.4 2.8E+02 0.0097 22.8 23.4 197 107-337 34-238 (318)
232 3no2_A Uncharacterized protein 24.4 3.1E+02 0.011 22.8 15.7 143 181-338 13-164 (276)
233 1erj_A Transcriptional repress 24.3 3.6E+02 0.012 23.6 14.9 94 231-332 145-241 (393)
234 1i2h_A PSD-ZIP45(homer-1C/VESL 24.1 1E+02 0.0036 24.1 4.6 38 120-168 17-55 (168)
235 4a0p_A LRP6, LRP-6, low-densit 23.7 4.9E+02 0.017 25.0 20.6 193 105-335 44-243 (628)
236 3vu4_A KMHSV2; beta-propeller 23.7 3.5E+02 0.012 23.2 21.2 64 264-331 206-273 (355)
237 1q67_A Decapping protein invol 23.2 1.4E+02 0.0049 24.3 5.3 28 313-340 37-64 (231)
238 2w18_A PALB2, fancn, partner a 22.2 2.5E+02 0.0086 25.0 7.4 28 267-296 55-83 (356)
239 2oaj_A Protein SNI1; WD40 repe 22.1 6.2E+02 0.021 25.5 21.7 187 111-333 31-246 (902)
240 2be1_A Serine/threonine-protei 22.0 3.9E+02 0.013 23.4 8.7 115 108-245 9-135 (339)
241 2kwv_A RAD30 homolog B, DNA po 21.8 40 0.0014 20.0 1.3 16 7-22 22-37 (48)
242 2oit_A Nucleoporin 214KDA; NH2 21.2 4.5E+02 0.015 23.6 9.7 65 265-333 162-227 (434)
243 1yiq_A Quinohemoprotein alcoho 20.7 5.8E+02 0.02 24.7 20.6 124 108-246 69-200 (689)
No 1
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.48 E-value=3e-11 Score=109.68 Aligned_cols=196 Identities=8% Similarity=0.013 Sum_probs=129.5
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++++||.|++|..+|+.+..+... .....+ . +|+.++......+ ......+++|+..+++|+.++
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~lyv~GG~~~~~~--~~~~~~~~~~d~~~~~W~~~~ 133 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCLF-------GLGEAL----N-SIYVVGGREIKDG--ERCLDSVMCYDRLSFKWGESD 133 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEESC-------EEEEET----T-EEEEECCEESSTT--CCBCCCEEEEETTTTEEEECC
T ss_pred ceEEecCCCCeEEECCCCCcchhce-------eEEEEC----C-EEEEEeCCcCCCC--CcccceEEEECCCCCcEeECC
Confidence 3789999999999999876543111 111111 1 4555432211011 133568999999999999998
Q ss_pred ccCccccCCCCeEEECceEEEEeeecC-CCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCCC-
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTVD- 276 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~- 276 (376)
.+|... ....++.++|.+|.+++... ......+..||+.+++|+.+ ++|..... ...++++|+|++++.....
T Consensus 134 ~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~ 209 (315)
T 4asc_A 134 PLPYVV-YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL---FGATVHDGRIIVAAGVTDTG 209 (315)
T ss_dssp CCSSCC-BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEEEEECSSS
T ss_pred CCCCcc-cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc---eEEEEECCEEEEEeccCCCC
Confidence 665433 23357789999999987632 22345799999999999998 56654433 5677889999999983222
Q ss_pred CEEEEEEe--CCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC---------------CeEEEEeCCCCcEEEE
Q 048178 277 HCFKIWVM--QKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS---------------SQLLLYEPGTGELRDF 335 (376)
Q Consensus 277 ~~l~vW~l--~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~---------------~~~~~yd~~t~~~~~v 335 (376)
..-.+|.. +..+|..+..+ |........+ .-++.|++.... ..+..||+++++|+++
T Consensus 210 ~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 210 LTSSAEVYSITDNKWAPFEAF-PQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ccceEEEEECCCCeEEECCCC-CCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 22245555 44899999776 5543333333 336777776321 2488999999999999
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.48 E-value=5.4e-11 Score=107.61 Aligned_cols=209 Identities=8% Similarity=0.065 Sum_probs=138.5
Q ss_pred eeecceEEEeec----------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecC
Q 048178 106 GLYCGIVFIEGL----------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEK 175 (376)
Q Consensus 106 ~s~~Gll~~~~~----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 175 (376)
...+|.|++..+ ...++++||.|++|..+|+++..+... ....++ . +|+.++.. ...
T Consensus 67 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG~-~~~ 133 (308)
T 1zgk_A 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-------GVGVID----G-HIYAVGGS-HGC 133 (308)
T ss_dssp EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-------EEEEET----T-EEEEECCE-ETT
T ss_pred EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-------EEEEEC----C-EEEEEcCC-CCC
Confidence 344666665532 246899999999999999876543221 112222 1 45554321 111
Q ss_pred CCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCC
Q 048178 176 RDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLES 254 (376)
Q Consensus 176 ~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~ 254 (376)
.....+++|+..+++|+.++.+|... ....++.++|.+|.+++.........+..||+.+++|+.+ ++|.....
T Consensus 134 ----~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 208 (308)
T 1zgk_A 134 ----IHHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG 208 (308)
T ss_dssp ----EECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred ----cccccEEEECCCCCeEeECCCCCccc-cceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc
Confidence 12457999999999999998665432 2335678899999998754322245699999999999988 55554433
Q ss_pred CCceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEE
Q 048178 255 SLDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLY 325 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~y 325 (376)
...++++++|++++.... ...+.++.++..+|.++..+ |......-.+ .-++.|++... ...+..|
T Consensus 209 ---~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~y 283 (308)
T 1zgk_A 209 ---AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECY 283 (308)
T ss_dssp ---CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEE
T ss_pred ---ceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC-CCCccceEEE-EECCEEEEEcCcCCCcccceEEEE
Confidence 467778999999987321 24566666666999998766 5543322233 33778887743 3469999
Q ss_pred eCCCCcEEEEEE
Q 048178 326 EPGTGELRDFEL 337 (376)
Q Consensus 326 d~~t~~~~~v~~ 337 (376)
|+++++|+++.-
T Consensus 284 d~~~~~W~~~~~ 295 (308)
T 1zgk_A 284 DPDTDTWSEVTR 295 (308)
T ss_dssp ETTTTEEEEEEE
T ss_pred cCCCCEEeecCC
Confidence 999999999843
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.45 E-value=3.4e-11 Score=108.70 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=140.5
Q ss_pred eeecceEEEeec-----CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCC
Q 048178 106 GLYCGIVFIEGL-----NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 106 ~s~~Gll~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 180 (376)
...+|.|++..+ ...+.++||.|++|..+|+++..+... ....++ . +|+.++. .... ..
T Consensus 52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG-~~~~---~~ 115 (306)
T 3ii7_A 52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-------AACAAE----G-KIYTSGG-SEVG---NS 115 (306)
T ss_dssp EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-------EEEEET----T-EEEEECC-BBTT---BS
T ss_pred EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-------eEEEEC----C-EEEEECC-CCCC---Cc
Confidence 345776665543 357899999999999998876543221 112221 1 4444432 1101 13
Q ss_pred CcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCC----ccEEEEEECCCceEeee-cCCCCCCCC
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDND----NYVILSFHMAEEKFQEI-QGPCTLESS 255 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~----~~~i~~fD~~~e~~~~i-~lP~~~~~~ 255 (376)
....+++|++.+++|+.++.+|.... ...++.++|.+|.+++...... ...+..||+++++|+.+ ++|.....
T Consensus 116 ~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~- 193 (306)
T 3ii7_A 116 ALYLFECYDTRTESWHTKPSMLTQRC-SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN- 193 (306)
T ss_dssp CCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-
T ss_pred EeeeEEEEeCCCCceEeCCCCcCCcc-eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-
Confidence 35689999999999999987654332 3346788999999987543322 45699999999999999 55654433
Q ss_pred CceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEe
Q 048178 256 LDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYE 326 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd 326 (376)
..+++++|+|++++.... ...+.++.++..+|..+..+ |......-.+ .-++.|++... ...+..||
T Consensus 194 --~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd 269 (306)
T 3ii7_A 194 --HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKGVTVKCA-AVGSIVYVLAGFQGVGRLGHILEYN 269 (306)
T ss_dssp --CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCBSCCEEE-EETTEEEEEECBCSSSBCCEEEEEE
T ss_pred --ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCccceeEE-EECCEEEEEeCcCCCeeeeeEEEEc
Confidence 567788999999987311 24455666666899998776 5543333333 33778887743 25699999
Q ss_pred CCCCcEEEEEE
Q 048178 327 PGTGELRDFEL 337 (376)
Q Consensus 327 ~~t~~~~~v~~ 337 (376)
+++++|+.+.-
T Consensus 270 ~~~~~W~~~~~ 280 (306)
T 3ii7_A 270 TETDKWVANSK 280 (306)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCeEEeCCC
Confidence 99999999853
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.43 E-value=5.9e-11 Score=106.86 Aligned_cols=208 Identities=9% Similarity=0.088 Sum_probs=139.1
Q ss_pred eeecceEEEeec------CCeEEEEecCccc---eeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCC
Q 048178 106 GLYCGIVFIEGL------NNRITLWNIATRE---SVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKR 176 (376)
Q Consensus 106 ~s~~Gll~~~~~------~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 176 (376)
...+|.|++..+ ...++++||.|++ |..+|+.+..+... ....++ . +|+.++.. ...
T Consensus 59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~lyv~GG~-~~~- 124 (301)
T 2vpj_A 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-------GATTLG----D-MIYVSGGF-DGS- 124 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-------EEEEET----T-EEEEECCB-CSS-
T ss_pred EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-------eEEEEC----C-EEEEEccc-CCC-
Confidence 345666665532 2468999999999 99998877543221 112222 2 45444321 111
Q ss_pred CCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCC
Q 048178 177 DSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESS 255 (376)
Q Consensus 177 ~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~ 255 (376)
.....+++|+..+++|+.++.+|... ....++.++|.+|.+++.........+..||+++++|+.+ ++|.....
T Consensus 125 ---~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~- 199 (301)
T 2vpj_A 125 ---RRHTSMERYDPNIDQWSMLGDMQTAR-EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG- 199 (301)
T ss_dssp ---CBCCEEEEEETTTTEEEEEEECSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-
T ss_pred ---cccceEEEEcCCCCeEEECCCCCCCc-ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-
Confidence 22468999999999999987665332 2335678899999988654322245799999999999998 55655433
Q ss_pred CceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc-C-----CeEEEEe
Q 048178 256 LDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-S-----SQLLLYE 326 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~-----~~~~~yd 326 (376)
..++..+++|++++.... ...+.++.++..+|..+..+ |......-.+ .-++.|++... . ..+..||
T Consensus 200 --~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd 275 (301)
T 2vpj_A 200 --AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYD 275 (301)
T ss_dssp --CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEE
T ss_pred --ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCcccceeEE-EECCEEEEEcCcCCCcccccEEEEc
Confidence 567788999999988322 34566666666899998776 5543333333 33778887743 1 4589999
Q ss_pred CCCCcEEEEE
Q 048178 327 PGTGELRDFE 336 (376)
Q Consensus 327 ~~t~~~~~v~ 336 (376)
+++++|+.+.
T Consensus 276 ~~~~~W~~~~ 285 (301)
T 2vpj_A 276 PIIDSWEVVT 285 (301)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEEcC
Confidence 9999999984
No 5
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.42 E-value=1.1e-10 Score=105.95 Aligned_cols=194 Identities=13% Similarity=0.167 Sum_probs=128.8
Q ss_pred EEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccc
Q 048178 121 ITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKS 200 (376)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 200 (376)
++++||.|++|..+|+.+..+... ....++ . +|+.++...... ......+++|++.+++|+.++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG~~~~~---~~~~~~~~~yd~~~~~W~~~~~ 144 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLF-------GLGEVD----D-KIYVVAGKDLQT---EASLDSVLCYDPVAAKWSEVKN 144 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSC-------EEEEET----T-EEEEEEEEBTTT---CCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCcEEECCCCCcccccc-------ceEEEC----C-EEEEEcCccCCC---CcccceEEEEeCCCCCEeECCC
Confidence 789999999999998876543211 111121 2 455554321111 1234689999999999999986
Q ss_pred cCccccCCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCCC--
Q 048178 201 IDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTVD-- 276 (376)
Q Consensus 201 ~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~-- 276 (376)
+|.... ...++.++|.+|.+++..... ....+..||+++++|+.+ ++|..... ..+++++|+|++++.....
T Consensus 145 ~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~ 220 (318)
T 2woz_A 145 LPIKVY-GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM---FGVAIHKGKIVIAGGVTEDGL 220 (318)
T ss_dssp CSSCEE-SCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEEEEEETTEE
T ss_pred CCCccc-ccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc---ceEEEECCEEEEEcCcCCCCc
Confidence 654332 334677999999998753221 234699999999999998 55654433 4677889999999983222
Q ss_pred -CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc---------------CCeEEEEeCCCCcEEEE
Q 048178 277 -HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN---------------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 277 -~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~---------------~~~~~~yd~~t~~~~~v 335 (376)
..++++.++..+|.++..+ |.......++ .-++.|++... ...+..||+++++|+++
T Consensus 221 ~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 221 SASVEAFDLKTNKWEVMTEF-PQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEEEEETTTCCEEECCCC-SSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred cceEEEEECCCCeEEECCCC-CCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 2344444455889998777 6543333333 33678877632 24589999999999998
No 6
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.42 E-value=1.2e-10 Score=104.99 Aligned_cols=208 Identities=12% Similarity=0.161 Sum_probs=138.6
Q ss_pred eeecceEEEeec------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCC
Q 048178 106 GLYCGIVFIEGL------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179 (376)
Q Consensus 106 ~s~~Gll~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 179 (376)
...+|.|++..+ ...+.++||.|++|..+|+++..+... ....++ . +++.++.. ...
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG~-~~~---- 120 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-------GAAVLN----G-LLYAVGGF-DGS---- 120 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-------EEEEET----T-EEEEEEEE-CSS----
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-------EEEEEC----C-EEEEEcCC-CCC----
Confidence 345776766532 246899999999999999877543221 111122 2 45554322 111
Q ss_pred CCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC--CccEEEEEECCCceEeee-cCCCCCCCCC
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN--DNYVILSFHMAEEKFQEI-QGPCTLESSL 256 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~e~~~~i-~lP~~~~~~~ 256 (376)
.....+++|+..+++|+.++.+|... ....++.++|.+|.+++..... ....+..||+++++|+.+ ++|.....
T Consensus 121 ~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-- 197 (302)
T 2xn4_A 121 TGLSSVEAYNIKSNEWFHVAPMNTRR-SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-- 197 (302)
T ss_dssp CEEEEEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS--
T ss_pred ccCceEEEEeCCCCeEeecCCCCCcc-cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc--
Confidence 22468999999999999998665432 2334678899999998654321 134689999999999998 56654433
Q ss_pred ceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeC
Q 048178 257 DVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEP 327 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~ 327 (376)
..+++++|+|++++.... ...+.++.++..+|..+..+ |.......++ .-++.|++... ...+..||+
T Consensus 198 -~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 198 -AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp -CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEET
T ss_pred -ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccCeEE-EECCEEEEECCcCCCcccccEEEEcC
Confidence 567788999999987322 23555666666899998776 5543322233 33778887743 235999999
Q ss_pred CCCcEEEEE
Q 048178 328 GTGELRDFE 336 (376)
Q Consensus 328 ~t~~~~~v~ 336 (376)
++++|+.+.
T Consensus 275 ~~~~W~~~~ 283 (302)
T 2xn4_A 275 TTDKWTVVS 283 (302)
T ss_dssp TTTEEEECS
T ss_pred CCCeEEECC
Confidence 999999985
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.37 E-value=3.7e-10 Score=101.90 Aligned_cols=215 Identities=11% Similarity=0.022 Sum_probs=140.3
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEe
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
...+.++||.+++|..+++++..+... .....+ + +|+.++.. .. .....+++|+..+++|+.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~lyv~GG~--~~----~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDA-------ACVFWD----N-VVYILGGS--QL----FPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSC-------EEEEET----T-EEEEECCB--SS----SBCCEEEEEETTTTEEEE
T ss_pred CceEEEecCCCCCEecCCCCCccccee-------EEEEEC----C-EEEEEeCC--CC----CCcceEEEEeCCCCeEEE
Confidence 456899999999999999877543221 111121 1 34444221 11 235689999999999999
Q ss_pred ccccCccccCCCCeEEECceEEEEeeec-CCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-C
Q 048178 198 LKSIDYTMRLSSERTYFDGAFYWLLKLE-NDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-T 274 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~ 274 (376)
++.+|... ....++.++|.+|.+++.. .......+..||+.+.+|+.+ ++|..... ...+.++|+|++++.. .
T Consensus 85 ~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 85 KLGPPTPR-DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS---HGMVEANGLIYVCGGSLG 160 (306)
T ss_dssp EECCSSCC-BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEECCEES
T ss_pred CCCCCccc-cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce---eEEEEECCEEEEECCCCC
Confidence 98665432 2334678899999998764 222345799999999999998 56655433 5677889999999882 1
Q ss_pred C------CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc--
Q 048178 275 V------DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC-- 340 (376)
Q Consensus 275 ~------~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~-- 340 (376)
. ...+.++.++..+|.++..+ |......- ++.-++.|++... ...+..||+++++|+.+.-...
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCcccccceEEEeCCCCCeEEECCCc-cchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 1 34466666666999998766 55433222 3333778887732 2459999999999999853221
Q ss_pred -eEEEEEeecCccccCC
Q 048178 341 -WFSIYIYTESLITLKG 356 (376)
Q Consensus 341 -~~~~~~y~~sLv~~~~ 356 (376)
...+..+...+.-+++
T Consensus 239 ~~~~~~~~~~~i~v~GG 255 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAG 255 (306)
T ss_dssp SCCEEEEETTEEEEEEC
T ss_pred cceeEEEECCEEEEEeC
Confidence 3444444444444443
No 8
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.34 E-value=1e-09 Score=98.70 Aligned_cols=215 Identities=11% Similarity=0.110 Sum_probs=139.5
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc---e
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS---W 195 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~---W 195 (376)
..++++||.|++|..+|+.+..+.. . .....+ + +|+.++.. ... .....+++|+..+++ |
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~--~-----~~~~~~----~-~l~v~GG~-~~~----~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY--V-----ASVSLH----D-RIYVIGGY-DGR----SRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS--C-----EEEEET----T-EEEEECCB-CSS----CBCCCEEEEETTCCTTCCC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc--c-----cEEEEC----C-EEEEEcCC-CCC----ccCceEEEEECCCCCCCee
Confidence 4689999999999999977654311 1 112222 1 44444321 111 234689999999999 9
Q ss_pred EeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecC
Q 048178 196 RNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDT 274 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~ 274 (376)
+.++.+|... ....++.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...++.+|+|++++...
T Consensus 94 ~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 94 YSVAPMNVRR-GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG---AGLVVASGVIYCLGGYD 169 (301)
T ss_dssp EEECCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS---CEEEEETTEEEEECCBC
T ss_pred EECCCCCCCc-cceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc---ceEEEECCEEEEECCCC
Confidence 9997665432 2334678899999998754332245799999999999988 56654433 56677899999998732
Q ss_pred C---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc---eE
Q 048178 275 V---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC---WF 342 (376)
Q Consensus 275 ~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~---~~ 342 (376)
. ...+.++.++..+|.++..+ |......- ++.-++.|++... ...+..||+++++|+++.-... .+
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 247 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPM-ATKRSGAG-VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV 247 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCC-SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCcccceEEEEeCCCCcEEeCCCC-Ccccccce-EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce
Confidence 1 24556666666999998766 55433222 3333778887743 2459999999999999853221 33
Q ss_pred EEEEeecCccccCC
Q 048178 343 SIYIYTESLITLKG 356 (376)
Q Consensus 343 ~~~~y~~sLv~~~~ 356 (376)
.+..+...|.-+++
T Consensus 248 ~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 248 GATVLRGRLYAIAG 261 (301)
T ss_dssp EEEEETTEEEEECC
T ss_pred eEEEECCEEEEEcC
Confidence 44445444444443
No 9
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.32 E-value=6.7e-10 Score=99.96 Aligned_cols=215 Identities=8% Similarity=0.083 Sum_probs=139.1
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+.++||.+++|..+++.+..+... ..... ++ +|+.++. .... .....+++|+..+++|+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~----~~-~lyv~GG-~~~~----~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRA-------GMVYM----AG-LVFAVGG-FNGS----LRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-------EEEEE----TT-EEEEESC-BCSS----SBCCCEEEEETTTTEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccc-------eEEEE----CC-EEEEEeC-cCCC----ccccceEEECCCCCceeeC
Confidence 45789999999999998776543211 11111 11 3444421 1111 2245789999999999999
Q ss_pred cccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-CC-
Q 048178 199 KSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-TV- 275 (376)
Q Consensus 199 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~~- 275 (376)
+.+|.... ...++.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...++++|+|++++.. ..
T Consensus 93 ~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 93 ANMRDRRS-TLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS---VGVGVVGGLLYAVGGYDVAS 168 (302)
T ss_dssp CCCSSCCB-SCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEECCEETTT
T ss_pred CCCCcccc-ceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC---ceEEEECCEEEEEeCCCCCC
Confidence 86654322 234678899999998765332235689999999999998 55654433 5677889999999872 11
Q ss_pred ---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc---eEE
Q 048178 276 ---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC---WFS 343 (376)
Q Consensus 276 ---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~---~~~ 343 (376)
...+.++.++..+|.++..+ |....... ++.-++.|++... ...+..||+++++|+++.-... ...
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEM-STRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCC-SSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CccccEEEEEeCCCCcEEECCCC-cccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 23466666666899999766 55433332 3333778887743 2459999999999999853221 333
Q ss_pred EEEeecCccccCC
Q 048178 344 IYIYTESLITLKG 356 (376)
Q Consensus 344 ~~~y~~sLv~~~~ 356 (376)
+..+...+.-+++
T Consensus 247 ~~~~~~~i~v~GG 259 (302)
T 2xn4_A 247 VCAVNGLLYVVGG 259 (302)
T ss_dssp EEEETTEEEEECC
T ss_pred EEEECCEEEEECC
Confidence 4444444444443
No 10
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.31 E-value=4.5e-10 Score=101.51 Aligned_cols=219 Identities=10% Similarity=0.044 Sum_probs=139.1
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEec-CCCCCCCcceEEEEEcCCCceE
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDE-KRDSSCPFSLVTVYNLSTNSWR 196 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-~~~~~~~~~~~~vyss~t~~W~ 196 (376)
...+.++||.|++|..+++.+..+... ..... +. +|+.++..... .. ......+++|+..+++|+
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~----~~-~lyv~GG~~~~~~~--~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGL-------AGCVV----GG-LLYAVGGRNNSPDG--NTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSC-------EEEEE----TT-EEEEECCEEEETTE--EEECCCEEEEETTTTEEE
T ss_pred cceEEEEcCCCCeEeECCCCCcccccc-------eEEEE----CC-EEEEECCCcCCCCC--CeecceEEEECCCCCeEe
Confidence 356899999999999998776543211 11111 11 34444221100 00 012357899999999999
Q ss_pred eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC
Q 048178 197 NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV 275 (376)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~ 275 (376)
.++.+|... .....+.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...++++++|++++....
T Consensus 104 ~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 104 PCAPMSVPR-NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG---VGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp ECCCCSSCC-BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEECCBCS
T ss_pred ECCCCCcCc-cccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc---eEEEEECCEEEEEeCCCC
Confidence 998665432 2334678899999998754321234689999999999988 56655433 466778999999988321
Q ss_pred ---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc---eEE
Q 048178 276 ---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC---WFS 343 (376)
Q Consensus 276 ---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~---~~~ 343 (376)
...+.++.++..+|..+..+ |......-.+ .-++.|++... ...+..||+++++|+++.-... ...
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 257 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAM-NTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 257 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred CCcCceEEEEeCCCCeEeeCCCC-CCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE
Confidence 34566666666999998766 5543323223 33778887743 2459999999999999853211 334
Q ss_pred EEEeecCccccCC
Q 048178 344 IYIYTESLITLKG 356 (376)
Q Consensus 344 ~~~y~~sLv~~~~ 356 (376)
+..+...|.-+++
T Consensus 258 ~~~~~~~i~v~GG 270 (308)
T 1zgk_A 258 ITVHQGRIYVLGG 270 (308)
T ss_dssp EEEETTEEEEECC
T ss_pred EEEECCEEEEEcC
Confidence 4444444444443
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.24 E-value=2.4e-09 Score=97.00 Aligned_cols=202 Identities=10% Similarity=0.067 Sum_probs=127.3
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEec-CCCCCCCcceEEEEEcCCCceEe
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDE-KRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
..+.++||.|++|.. ++.+.+..... ..... ..+ +|+.++..... ..........+++|+..+++|+.
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~------~~~~~--~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNH------VSLVT--KEN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSE------EEEEC--TTC--CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccc------eEEEE--ECC--EEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 568999999999986 33322211111 12221 122 33333322111 11101112358999999999999
Q ss_pred ccccCccccCCCCeEEECceEEEEeeecC---CCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec
Q 048178 198 LKSIDYTMRLSSERTYFDGAFYWLLKLEN---DNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD 273 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~ 273 (376)
++.+|.... ....+.++|.+|.+++... ......+..||+.+.+|+.+ ++|..... ...+..+|+|++++..
T Consensus 82 ~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 MPPLPSPRC-LFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG---HTVLSHMDLVYVIGGK 157 (315)
T ss_dssp CCCBSSCEE-SCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEECCB
T ss_pred CCCCCcchh-ceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc---eeEEEECCEEEEEeCC
Confidence 987654332 2357788999999987531 12245689999999999988 66655433 5677899999999883
Q ss_pred -CC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc-C-----CeEEEEeCCCCcEEEEEE
Q 048178 274 -TV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-S-----SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 274 -~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~-----~~~~~yd~~t~~~~~v~~ 337 (376)
.. ...+.++..+..+|.++..+ |.+....- ++.-++.|++... . ..+..||+++++|+++.-
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPM-QTARSLFG-ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCC-SSCCBSCE-EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred CCCCcccceEEEEeCCCCeEEECCCC-CCchhceE-EEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 21 23455555555899998776 55433332 3333778887643 1 259999999999999953
No 12
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.14 E-value=1.6e-11 Score=108.30 Aligned_cols=53 Identities=21% Similarity=0.476 Sum_probs=49.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCccccc-eeeecchhhhhhcCChHHHHHHhhcC
Q 048178 1 MVLLGNDDSPEDIMIEILSRLPVKSLI-RLRCVCKSWYALIKNPNFISMHLKND 53 (376)
Q Consensus 1 ~~~~~~~~LP~Dll~eIl~rLp~~~l~-r~r~VcK~W~~li~~p~F~~~~~~~~ 53 (376)
|+++.+..||+||+.+||+|||+++|+ ||++|||+|++++++|.|.+.++.+.
T Consensus 46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 346778999999999999999999999 99999999999999999999998876
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.14 E-value=6.2e-09 Score=94.40 Aligned_cols=230 Identities=12% Similarity=0.089 Sum_probs=136.6
Q ss_pred cceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEe-cCCCCCCCcceEEE
Q 048178 109 CGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWD-EKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~~~~~~~~~~~~v 187 (376)
++.|++..+ ..+.++||.|++|...|.+. ...... ..... ..+ +|+.++.... ...........+++
T Consensus 15 ~~~i~~~GG-~~~~~yd~~~~~W~~~~~~~-~~~r~~------~~~~~--~~~--~lyv~GG~~~~~~~~~~~~~~~~~~ 82 (318)
T 2woz_A 15 KDLILLVND-TAAVAYDPMENECYLTALAE-QIPRNH------SSIVT--QQN--QVYVVGGLYVDEENKDQPLQSYFFQ 82 (318)
T ss_dssp EEEEEEECS-SEEEEEETTTTEEEEEEECT-TSCSSE------EEEEC--SSS--CEEEEESSCC-------CCCBEEEE
T ss_pred cchhhhccc-cceEEECCCCCceecccCCc-cCCccc------eEEEE--ECC--EEEEECCcccCccccCCCccccEEE
Confidence 344444443 34689999999999844321 111111 11111 111 2333322100 00000011234899
Q ss_pred EEcCCCceEeccccCccccCCCCeEEECceEEEEeeecC--CCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEec
Q 048178 188 YNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLEN--DNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYD 264 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~ 264 (376)
|+..+++|+.++.+|.... ....+.++|.+|.+++... ......+..||+.+.+|+.+ ++|..... ...+..+
T Consensus 83 ~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~ 158 (318)
T 2woz_A 83 LDNVSSEWVGLPPLPSARC-LFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG---HNVISHN 158 (318)
T ss_dssp EETTTTEEEECSCBSSCBC-SCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES---CEEEEET
T ss_pred EeCCCCcEEECCCCCcccc-ccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc---cEEEEEC
Confidence 9999999999986654332 3346788999999987642 11235689999999999998 66655433 4567789
Q ss_pred CeEEEEEec-CC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEE
Q 048178 265 QSLSLLLLD-TV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRD 334 (376)
Q Consensus 265 g~L~l~~~~-~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~ 334 (376)
|+|++++.. .. ...+.++.++..+|.++..+ |......-.+ .-++.|++... ...+..||+++++|++
T Consensus 159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC-CCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 999999872 11 23455666666899998766 5543222223 33778887642 1358899999999999
Q ss_pred EEEec-c--eEEEEEeecCccccCC
Q 048178 335 FELEC-C--WFSIYIYTESLITLKG 356 (376)
Q Consensus 335 v~~~~-~--~~~~~~y~~sLv~~~~ 356 (376)
+.-.. . ...+..+...|.-+++
T Consensus 237 ~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 237 MTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp CCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCCCCcccceEEEEECCEEEEECC
Confidence 85322 1 3344455555544433
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.13 E-value=7.9e-09 Score=95.19 Aligned_cols=217 Identities=13% Similarity=0.051 Sum_probs=130.6
Q ss_pred eeeecceEEEeec--CCeEEEEecC--ccceeecCCCC-CCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCC
Q 048178 105 KGLYCGIVFIEGL--NNRITLWNIA--TRESVTLPKYR-AIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179 (376)
Q Consensus 105 ~~s~~Gll~~~~~--~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 179 (376)
....+|.|.+..+ .+.++++||. +++|..+|+.+ ..+.. . ....++ + +|+.++..........
T Consensus 15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~------~~~~~~---~--~lyv~GG~~~~~~~~~ 82 (357)
T 2uvk_A 15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-A------TSAFID---G--NLYVFGGIGKNSEGLT 82 (357)
T ss_dssp EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-C------EEEEET---T--EEEEECCEEECTTSCE
T ss_pred EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-c------eEEEEC---C--EEEEEcCCCCCCCccc
Confidence 3344777766643 4578999998 49999999876 33211 1 112222 1 4444432211000000
Q ss_pred CCcceEEEEEcCCCceEeccccCcccc-CCCCeEEECceEEEEeeecCCC------------------------------
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSIDYTMR-LSSERTYFDGAFYWLLKLENDN------------------------------ 228 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~------------------------------ 228 (376)
.....+++|+..+++|+.++.++ ..+ ....++.++|.+|.+++.....
T Consensus 83 ~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 83 QVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred eeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 12457999999999999998765 122 2234577999999998643110
Q ss_pred ----CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecC--C--CCEEEEEEe--CCCceeeEEEECC
Q 048178 229 ----DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDT--V--DHCFKIWVM--QKKNWIKQSSVGP 297 (376)
Q Consensus 229 ----~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~--~--~~~l~vW~l--~~~~W~~~~~i~~ 297 (376)
....+..||+.+++|+.+ ++|..... ...+++.+++|++++... . ...+.++.+ +..+|.++..+ |
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~ 238 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTA--GAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-S 238 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCB--SCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-S
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcc--cccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-C
Confidence 124799999999999998 66643221 246778899999998721 1 223344444 33889998766 4
Q ss_pred CCce-eeeEEEeeCCcEEEEEcC-----------------------CeEEEEeCCCCcEEEEEE
Q 048178 298 FIGI-FQPLLFWKKGAFFVESNS-----------------------SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 298 ~~~~-~~~~~~~~~g~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~~ 337 (376)
.+.- ..-.++.-++.|++.... ..+..||+++++|+++.-
T Consensus 239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 302 (357)
T 2uvk_A 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE 302 (357)
T ss_dssp TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence 4321 122233447788877431 247899999999999854
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.09 E-value=2.6e-08 Score=91.67 Aligned_cols=152 Identities=8% Similarity=0.069 Sum_probs=97.3
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC-CccEEEEEEC--CCceEeee-cCCCCCCCCCc
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSFHM--AEEKFQEI-QGPCTLESSLD 257 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~--~~e~~~~i-~lP~~~~~~~~ 257 (376)
...+++|+..+++|+.+..+|.........+.++|.+|.+++..... ....+..||+ ++.+|+.+ ++|..... ..
T Consensus 167 ~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~-~~ 245 (357)
T 2uvk_A 167 NKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV-AG 245 (357)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC-BS
T ss_pred cccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc-cc
Confidence 36899999999999999766543323245788899999997643211 1235777876 89999988 44433221 22
Q ss_pred eeEEEecCeEEEEEecCCC--------------------CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEE
Q 048178 258 VTLGIYDQSLSLLLLDTVD--------------------HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVES 317 (376)
Q Consensus 258 ~~l~~~~g~L~l~~~~~~~--------------------~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~ 317 (376)
..+++.+|+|++++..... ..++++.++..+|.++..+ |...... .++.-++.|++..
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~-~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-SQGRAYG-VSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-SSCCBSS-EEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-CCCcccc-eeEEeCCEEEEEe
Confidence 4578899999999872111 2455666666899999888 6654332 2334478888764
Q ss_pred c-C------CeEEEEeCCCCcEEEEE
Q 048178 318 N-S------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 318 ~-~------~~~~~yd~~t~~~~~v~ 336 (376)
. . ..++.|++++++|.+..
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 3 1 34888999999988764
No 16
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.09 E-value=3.4e-11 Score=78.26 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHH
Q 048178 3 LLGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFIS 47 (376)
Q Consensus 3 ~~~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 47 (376)
...+..||+|++.+||++||++++.++++|||+|+.++.++.|-+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 345789999999999999999999999999999999999988744
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.02 E-value=2.1e-08 Score=100.71 Aligned_cols=211 Identities=15% Similarity=0.136 Sum_probs=131.5
Q ss_pred ecceEEEeec-----CCeEEEEecCccceeecC-CCC---CCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCC
Q 048178 108 YCGIVFIEGL-----NNRITLWNIATRESVTLP-KYR---AIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178 (376)
Q Consensus 108 ~~Gll~~~~~-----~~~~~V~NP~T~~~~~LP-~~~---~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~ 178 (376)
.+|.|++..+ .+.++++||.|++|..++ +.+ .......+ ....+. . +. +|+.++.. ....
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-----s~~~~~-~-~~-~lyv~GG~-~~~~-- 464 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-----TFTTIS-R-NN-QLLLIGGR-KAPH-- 464 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-----EEEEET-T-TT-EEEEECCB-SSTT--
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-----EEEEEc-c-CC-EEEEEcCC-CCCC--
Confidence 4666655543 346899999999999998 522 11111111 112220 0 11 34444321 1110
Q ss_pred CCCcceEEEEEcCCCceEeccccCccccCCCCeEEE-CceEEEEeeecCCCCccEEEEEECCCceEeeec----CCCCCC
Q 048178 179 SCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF-DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ----GPCTLE 253 (376)
Q Consensus 179 ~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~----lP~~~~ 253 (376)
.....+++|+..+++|+.++.+|.... ...++.+ +|.+|.+++.... . .+..||+++++|+.++ +|....
T Consensus 465 -~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~--~-~v~~yd~~t~~W~~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 465 -QGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEG--P-AMLLYNVTEEIFKDVTPKDEFFQNSL 539 (695)
T ss_dssp -CBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSS--C-SEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred -CccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCC--C-CEEEEECCCCceEEccCCCCCCCccc
Confidence 124579999999999999987654332 2235554 9999999876532 2 7999999999999885 454433
Q ss_pred CCCceeEEEec---CeEEEEEecC-C----CCEEEEEEeCCCc------eeeEEEECC-CCceeeeEEEeeCCcEEEEEc
Q 048178 254 SSLDVTLGIYD---QSLSLLLLDT-V----DHCFKIWVMQKKN------WIKQSSVGP-FIGIFQPLLFWKKGAFFVESN 318 (376)
Q Consensus 254 ~~~~~~l~~~~---g~L~l~~~~~-~----~~~l~vW~l~~~~------W~~~~~i~~-~~~~~~~~~~~~~g~i~~~~~ 318 (376)
. ...++++ |+|++++... . ...+.+|.++... |.++..+ | ......-..+.+++.||+...
T Consensus 540 ~---~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 540 V---SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH-PLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp B---SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC-GGGCCBSCEEEEEETTEEEEECC
T ss_pred c---eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC-CCCCcccceEEEeCCCEEEEECC
Confidence 2 3444545 8899998831 1 3567777777776 8888775 3 332333344444488887743
Q ss_pred ---------CCeEEEEeCCCCcEEEEEEe
Q 048178 319 ---------SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 319 ---------~~~~~~yd~~t~~~~~v~~~ 338 (376)
...+..||+++++|+.+.+.
T Consensus 616 ~~~~~~~~~~~~v~~yd~~t~~W~~~~~p 644 (695)
T 2zwa_A 616 TSPSGLFDRTNSIISLDPLSETLTSIPIS 644 (695)
T ss_dssp BCSSCCCCTTTSEEEEETTTTEEEECCCC
T ss_pred ccCCCCCCCCCeEEEEECCCCeEEEeecc
Confidence 24599999999999976553
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.88 E-value=7e-06 Score=77.50 Aligned_cols=284 Identities=13% Similarity=0.072 Sum_probs=145.6
Q ss_pred CCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC-CcEEE-EeeeccCccCCCCCceeEEec-
Q 048178 5 GNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN-TRLIV-IYAKEDNTEEHSHPKEYFCLF- 81 (376)
Q Consensus 5 ~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~- 81 (376)
....||+|++.+||+.|++++|.++++|||+|+.++.++.+-+........ .+... .............+...+.-.
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~ 97 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH 97 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence 357899999999999999999999999999999999999887766543321 11000 000000000000000000000
Q ss_pred CCCCccccccc----cCCCCCCccceeeeeecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEee
Q 048178 82 PDETLEDLSLQ----DLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGL 156 (376)
Q Consensus 82 ~~~~~~~~~~~----~l~p~~~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~ 156 (376)
.....+..... .+..........+...+.+++....+..+.|||..+++... ++.-. .. ...+.+
T Consensus 98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-----~~-----v~~~~~ 167 (445)
T 2ovr_B 98 RIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-----GG-----VWSSQM 167 (445)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS-----SC-----EEEEEE
T ss_pred hhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCC-----CC-----EEEEEe
Confidence 00000000000 00001111112344456666666778889999999887544 22111 11 234444
Q ss_pred eCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEE
Q 048178 157 DPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILS 235 (376)
Q Consensus 157 d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~ 235 (376)
+ +. .++.. .....+.+++..++.-. .+... .....++..+|.....+.. ...|..
T Consensus 168 ~---~~-~l~s~-----------~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~l~s~s~-----dg~i~~ 223 (445)
T 2ovr_B 168 R---DN-IIISG-----------STDRTLKVWNAETGECIHTLYGH----TSTVRCMHLHEKRVVSGSR-----DATLRV 223 (445)
T ss_dssp E---TT-EEEEE-----------ETTSCEEEEETTTTEEEEEECCC----SSCEEEEEEETTEEEEEET-----TSEEEE
T ss_pred c---CC-EEEEE-----------eCCCeEEEEECCcCcEEEEECCC----CCcEEEEEecCCEEEEEeC-----CCEEEE
Confidence 4 22 22221 12457888998877422 11111 0111245555655444433 347899
Q ss_pred EECCCceEee-ecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE
Q 048178 236 FHMAEEKFQE-IQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF 314 (376)
Q Consensus 236 fD~~~e~~~~-i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~ 314 (376)
+|+.+.+... +.... ....-...+|...++... +..+.+|.++.. ..+..+........-+.+ ++..+
T Consensus 224 wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~~~~~--dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l 292 (445)
T 2ovr_B 224 WDIETGQCLHVLMGHV-----AAVRCVQYDGRRVVSGAY--DFMVKVWDPETE--TCLHTLQGHTNRVYSLQF--DGIHV 292 (445)
T ss_dssp EESSSCCEEEEEECCS-----SCEEEEEECSSCEEEEET--TSCEEEEEGGGT--EEEEEECCCSSCEEEEEE--CSSEE
T ss_pred EECCCCcEEEEEcCCc-----ccEEEEEECCCEEEEEcC--CCEEEEEECCCC--cEeEEecCCCCceEEEEE--CCCEE
Confidence 9988765432 22111 112223347776666654 788999998763 334444212111222222 56544
Q ss_pred -EEEcCCeEEEEeCCCCcEE
Q 048178 315 -VESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 315 -~~~~~~~~~~yd~~t~~~~ 333 (376)
....++.+..||+++++..
T Consensus 293 ~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEETTSCEEEEETTTCCEE
T ss_pred EEEeCCCeEEEEECCCCCEE
Confidence 4566788999999887644
No 19
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.86 E-value=3.5e-06 Score=79.86 Aligned_cols=287 Identities=9% Similarity=0.059 Sum_probs=138.7
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhhhcCC-hHHHHHHhhcCCC---CcEEE----EeeeccCccCCCCCceeE
Q 048178 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKN-PNFISMHLKNDVN---TRLIV----IYAKEDNTEEHSHPKEYF 78 (376)
Q Consensus 7 ~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~-p~F~~~~~~~~~~---~~~l~----~~~~~~~~~~~~~~~~~~ 78 (376)
..||+|++.+||+.||+++|.+++.|||+|+.++.+ +..-+.+.....- ...-- ....... .. ....+
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~ 91 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPK---LS-QQDRL 91 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTT---SC-HHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCC---cc-cchhh
Confidence 469999999999999999999999999999999998 7766655432211 00000 0000000 00 00000
Q ss_pred --EecCCC---Ccc-----ccccccCCCCCCccceeeeeecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCcccc
Q 048178 79 --CLFPDE---TLE-----DLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRV 147 (376)
Q Consensus 79 --~~~~~~---~~~-----~~~~~~l~p~~~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~ 147 (376)
.+.... ..+ ......+..........+...+++++....+..+.|||..+++... +..- ...
T Consensus 92 ~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-----~~~-- 164 (464)
T 3v7d_B 92 RLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH-----DGG-- 164 (464)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSC--
T ss_pred HHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-----CcC--
Confidence 000000 000 0000001000001112334456677766778889999998887543 2211 111
Q ss_pred ccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE----CceEEEEee
Q 048178 148 FGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF----DGAFYWLLK 223 (376)
Q Consensus 148 ~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~----~G~lywl~~ 223 (376)
...+.+.+.. .++... ....+.+++.+++.-... .... .....++.+ +|.....+
T Consensus 165 ---V~~l~~~~~~---~l~s~s-----------~dg~i~vwd~~~~~~~~~--~~~h-~~~v~~l~~~~~~~~~~l~s~- 223 (464)
T 3v7d_B 165 ---VWALKYAHGG---ILVSGS-----------TDRTVRVWDIKKGCCTHV--FEGH-NSTVRCLDIVEYKNIKYIVTG- 223 (464)
T ss_dssp ---EEEEEECSTT---EEEEEE-----------TTSCEEEEETTTTEEEEE--ECCC-SSCEEEEEEEESSSCEEEEEE-
T ss_pred ---EEEEEEcCCC---EEEEEe-----------CCCCEEEEECCCCcEEEE--ECCC-CCccEEEEEecCCCCCEEEEE-
Confidence 2345554332 333321 245788888887742211 1000 001112222 23333222
Q ss_pred ecCCCCccEEEEEECCCceEeee-c----------CCCCC-------CCC-CceeEEEecCeEEEEEecCCCCEEEEEEe
Q 048178 224 LENDNDNYVILSFHMAEEKFQEI-Q----------GPCTL-------ESS-LDVTLGIYDQSLSLLLLDTVDHCFKIWVM 284 (376)
Q Consensus 224 ~~~~~~~~~i~~fD~~~e~~~~i-~----------lP~~~-------~~~-~~~~l~~~~g~L~l~~~~~~~~~l~vW~l 284 (376)
.. ...|..+|+.+..-... . .|... ..+ ....-...+|.+.++... +..+.+|.+
T Consensus 224 s~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~--d~~i~vwd~ 297 (464)
T 3v7d_B 224 SR----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY--DNTLIVWDV 297 (464)
T ss_dssp ET----TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET--TSCEEEEET
T ss_pred cC----CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC--CCeEEEEEC
Confidence 22 23677788776542211 0 00000 000 111122345555555544 678999998
Q ss_pred CCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 285 QKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
... ..+..+.....-...+++..+|..++. ..++.+..||+++++..
T Consensus 298 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 298 AQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp TTT--EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCC--cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 763 233444222222444566667775554 56777999999887543
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.61 E-value=1.2e-06 Score=87.42 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=125.2
Q ss_pred eeecceEEEeec--CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 106 GLYCGIVFIEGL--NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 106 ~s~~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
...+|.|++..+ ...+.++||.|++|..+|+++..+... ....+ + .+ ||+.++... +.. ....
T Consensus 250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-------s~~~~-~-dg--~iyv~GG~~-~~~---~~~~ 314 (656)
T 1k3i_A 250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-------SSATM-S-DG--RVFTIGGSW-SGG---VFEK 314 (656)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-------EEEEC-T-TS--CEEEECCCC-CSS---SCCC
T ss_pred CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc-------ceEEe-c-CC--eEEEEeCcc-cCC---cccc
Confidence 345787777654 347899999999999999876543211 11221 0 11 344442211 111 2346
Q ss_pred eEEEEEcCCCceEeccccC-cccc--CCCCeEEECceEEEEeeecCCC----CccEEEEEECCCceEeeecCCCCC----
Q 048178 184 LVTVYNLSTNSWRNLKSID-YTMR--LSSERTYFDGAFYWLLKLENDN----DNYVILSFHMAEEKFQEIQGPCTL---- 252 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~-~~~~--~~~~~v~~~G~lywl~~~~~~~----~~~~i~~fD~~~e~~~~i~lP~~~---- 252 (376)
.+++|+..+++|+.++... ..++ .....+..++.+|.+....... ....+..||++++.|.....+...
T Consensus 315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 315 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394 (656)
T ss_dssp CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred cceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence 7999999999999875321 1111 1223445788888877543210 134789999999988643111110
Q ss_pred -CCCCceeEE---EecCeEEEEEecCC------CC---EEEEEEeCCCceeeEE--EECCCCceeeeEEEeeCCcEEEEE
Q 048178 253 -ESSLDVTLG---IYDQSLSLLLLDTV------DH---CFKIWVMQKKNWIKQS--SVGPFIGIFQPLLFWKKGAFFVES 317 (376)
Q Consensus 253 -~~~~~~~l~---~~~g~L~l~~~~~~------~~---~l~vW~l~~~~W~~~~--~i~~~~~~~~~~~~~~~g~i~~~~ 317 (376)
........+ ..+|+|++++.... .. .+++|..+...|.++. .+ |......-..+..+|+||+..
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p~~R~~~~~~~l~~g~i~v~G 473 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDGSTFITG 473 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTSCEEEEC
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-CCCcccCCeEECCCCCEEEEC
Confidence 000011111 24889999987311 11 3444444448899886 66 554333333444588888874
Q ss_pred cC------------CeEEEEeCCCCcEEEEE
Q 048178 318 NS------------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 318 ~~------------~~~~~yd~~t~~~~~v~ 336 (376)
.. ..+..||+++++|+.+.
T Consensus 474 G~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 474 GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 31 35899999999999875
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.58 E-value=2.3e-05 Score=73.74 Aligned_cols=284 Identities=15% Similarity=0.128 Sum_probs=138.2
Q ss_pred CCCCHH----HHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC-----------CcEE--EEeeeccCcc
Q 048178 7 DDSPED----IMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN-----------TRLI--VIYAKEDNTE 69 (376)
Q Consensus 7 ~~LP~D----ll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~-----------~~~l--~~~~~~~~~~ 69 (376)
..||+| |+.+||+.|++++|.++++|||+|+.++.++.+-+........ ..|. ++...... .
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~ 90 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPD-G 90 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC--------
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCC-C
Confidence 569999 9999999999999999999999999999887766655443211 0000 00000000 0
Q ss_pred CCCCCceeEE-ecC--------CCCccccccccCCC-----CCCccceeeeeecceEEEeecCCeEEEEecCccceeecC
Q 048178 70 EHSHPKEYFC-LFP--------DETLEDLSLQDLST-----QEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVTLP 135 (376)
Q Consensus 70 ~~~~~~~~~~-~~~--------~~~~~~~~~~~l~p-----~~~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP 135 (376)
.... ...+. +.+ ....+......+.. ........+...+..++....++.+.|||..|++....-
T Consensus 91 ~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~ 169 (435)
T 1p22_A 91 NAPP-NSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL 169 (435)
T ss_dssp --CC-SHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEE
T ss_pred CCCc-hhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE
Confidence 0000 00000 000 00000000000000 000011122333445555566778999999988755422
Q ss_pred CCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEEC
Q 048178 136 KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFD 215 (376)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~ 215 (376)
... ... ...+.+| +.+ ++.. .....+.+++..++.-... .... .....++..+
T Consensus 170 ~~h----~~~-----v~~l~~~---~~~-l~sg-----------~~dg~i~vwd~~~~~~~~~--~~~h-~~~v~~l~~~ 222 (435)
T 1p22_A 170 TGH----TGS-----VLCLQYD---ERV-IITG-----------SSDSTVRVWDVNTGEMLNT--LIHH-CEAVLHLRFN 222 (435)
T ss_dssp CCC----SSC-----EEEEECC---SSE-EEEE-----------ETTSCEEEEESSSCCEEEE--ECCC-CSCEEEEECC
T ss_pred cCC----CCc-----EEEEEEC---CCE-EEEE-----------cCCCeEEEEECCCCcEEEE--EcCC-CCcEEEEEEc
Confidence 111 111 2345543 232 2221 1245788899888753211 1000 0111244445
Q ss_pred ceEEEEeeecCCCCccEEEEEECCCceEee-e-cCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEE
Q 048178 216 GAFYWLLKLENDNDNYVILSFHMAEEKFQE-I-QGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQS 293 (376)
Q Consensus 216 G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~ 293 (376)
+.....+.. ...|..+|+.+..-.. . .+.... ....-...+|...++... +..+.+|.++.. ..+.
T Consensus 223 ~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~l~s~~~--dg~i~vwd~~~~--~~~~ 290 (435)
T 1p22_A 223 NGMMVTCSK-----DRSIAVWDMASPTDITLRRVLVGHR---AAVNVVDFDDKYIVSASG--DRTIKVWNTSTC--EFVR 290 (435)
T ss_dssp TTEEEEEET-----TSCEEEEECSSSSCCEEEEEECCCS---SCEEEEEEETTEEEEEET--TSEEEEEETTTC--CEEE
T ss_pred CCEEEEeeC-----CCcEEEEeCCCCCCceeeeEecCCC---CcEEEEEeCCCEEEEEeC--CCeEEEEECCcC--cEEE
Confidence 554433333 3378889987654221 1 111111 112333347776666554 789999998873 2333
Q ss_pred EECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEE
Q 048178 294 SVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 294 ~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~ 333 (376)
.+..... .+.++.-++..++ ...++.+..||+++++..
T Consensus 291 ~~~~~~~--~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 291 TLNGHKR--GIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp EEECCSS--CEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred EEcCCCC--cEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 4421111 1222222455444 466788999999987543
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.36 E-value=4.7e-06 Score=83.62 Aligned_cols=172 Identities=8% Similarity=-0.007 Sum_probs=110.3
Q ss_pred cceEEEEEcCCCceEecc-ccCc-ccc---CCCCeEEE--CceEEEEeeecCCC-CccEEEEEECCCceEeee-cCCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLK-SIDY-TMR---LSSERTYF--DGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI-QGPCTL 252 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~-~~~~-~~~---~~~~~v~~--~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i-~lP~~~ 252 (376)
...+.+|+..+++|+.++ .+|. ..+ ....++.+ +|.+|.+++..... ....+..||+.+.+|+.+ ++|...
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 457899999999999987 4221 112 23457788 99999998765322 134689999999999998 566544
Q ss_pred CCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEee-C-CcEEEEEcC--------
Q 048178 253 ESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWK-K-GAFFVESNS-------- 319 (376)
Q Consensus 253 ~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~-~-g~i~~~~~~-------- 319 (376)
.. ...+++ +|+|++++.......+.+|..+...|..+...+ |.........+.. + +.||+....
T Consensus 491 ~~---h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~ 567 (695)
T 2zwa_A 491 FR---HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567 (695)
T ss_dssp BS---CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred cc---ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence 33 456665 899999998432334555555558999887521 3332233323323 3 668877431
Q ss_pred CeEEEEeCCCCc------EEEEEEe---cc-eEEEEEee-cCccccCC
Q 048178 320 SQLLLYEPGTGE------LRDFELE---CC-WFSIYIYT-ESLITLKG 356 (376)
Q Consensus 320 ~~~~~yd~~t~~------~~~v~~~---~~-~~~~~~y~-~sLv~~~~ 356 (376)
..+..||+++++ |+++.-. .. ...+..+. ..|.-+++
T Consensus 568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred CcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 459999999999 8888542 11 44455555 44444443
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.17 E-value=7.8e-06 Score=81.54 Aligned_cols=145 Identities=10% Similarity=0.091 Sum_probs=96.3
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCC------CccEEEEEECCCceEeee-cCCCCCCCC
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDN------DNYVILSFHMAEEKFQEI-QGPCTLESS 255 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~------~~~~i~~fD~~~e~~~~i-~lP~~~~~~ 255 (376)
++.|+..+++|+.+..+|. ....++++ +|.+|.+++..... ....+..||+.+.+|+.+ .+|.....
T Consensus 168 ~~~~dp~~~~W~~~~~~P~---~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~- 243 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM- 243 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC-
T ss_pred cccCCCCCCeeeeeccCCC---CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC-
Confidence 3445566889998876554 22234555 99999998654311 123689999999999877 44443322
Q ss_pred CceeEE-EecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc--C-----CeEEEEeC
Q 048178 256 LDVTLG-IYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN--S-----SQLLLYEP 327 (376)
Q Consensus 256 ~~~~l~-~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~--~-----~~~~~yd~ 327 (376)
.....+ ..+|+|++++... ...+++|..+..+|.++..+ +......-.++..+|+||+... + ..+..||+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~-~~~v~~yd~~t~~W~~~~~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGND-AKKTSLYDSSSDSWIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SSCEEEECTTSCEEEECSSS-TTCEEEEEGGGTEEEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred ccccccCCCCCCEEEeCCCC-CCceEEecCcCCceeECCCC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 222333 3588999999832 34677777666899988766 5443333344444888888754 1 45899999
Q ss_pred CCCcEEEE
Q 048178 328 GTGELRDF 335 (376)
Q Consensus 328 ~t~~~~~v 335 (376)
++++|+.+
T Consensus 322 ~t~~W~~~ 329 (656)
T 1k3i_A 322 SSKTWTSL 329 (656)
T ss_dssp TTTEEEEE
T ss_pred CCCcceeC
Confidence 99999997
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.97 E-value=1.3e-06 Score=76.25 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC
Q 048178 4 LGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN 55 (376)
Q Consensus 4 ~~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~ 55 (376)
...+.||+|++..||+.|++++|+++.+|||+||.+..++..-+.++.+..+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence 3467899999999999999999999999999999999999988887776543
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.45 E-value=3.4e-05 Score=69.99 Aligned_cols=42 Identities=29% Similarity=0.690 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHH
Q 048178 4 LGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNF 45 (376)
Q Consensus 4 ~~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F 45 (376)
..++.||+|++.+||.+|+.+++.+++.|||+|+.++.+|..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 457899999999999999999999999999999999876653
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.00 E-value=0.00016 Score=70.94 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=29.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCC-ccccceeeecchhhhhh
Q 048178 1 MVLLGNDDSPEDIMIEILSRLP-VKSLIRLRCVCKSWYAL 39 (376)
Q Consensus 1 ~~~~~~~~LP~Dll~eIl~rLp-~~~l~r~r~VcK~W~~l 39 (376)
|.+-.++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4445678999999999999999 99999999999999988
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.34 E-value=0.00082 Score=65.75 Aligned_cols=34 Identities=15% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHhcC-Cccccceeeecchhhhhh
Q 048178 6 NDDSPEDIMIEILSRL-PVKSLIRLRCVCKSWYAL 39 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rL-p~~~l~r~r~VcK~W~~l 39 (376)
...||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 3579999999999999 899999999999999887
No 28
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.93 E-value=0.33 Score=41.36 Aligned_cols=114 Identities=10% Similarity=0.162 Sum_probs=76.0
Q ss_pred eE-EECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCc
Q 048178 211 RT-YFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKN 288 (376)
Q Consensus 211 ~v-~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~ 288 (376)
++ +.+|.+|--++... ...|..+|+++.+. ..+++|..... -.++..+++|+++... ...+-|+..+.
T Consensus 25 GL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fg---eGi~~~~~~ly~ltw~--~~~v~v~D~~t-- 94 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFG---AGIVAWRDRLIQLTWR--NHEGFVYDLAT-- 94 (243)
T ss_dssp EEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCE---EEEEEETTEEEEEESS--SSEEEEEETTT--
T ss_pred cEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcce---eEEEEeCCEEEEEEee--CCEEEEEECCc--
Confidence 44 44566776554432 45899999998766 55688765432 4566778899999875 55555555544
Q ss_pred eeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcE-EEEEE
Q 048178 289 WIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGEL-RDFEL 337 (376)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~-~~v~~ 337 (376)
-.++.++ +... ...++..+|. +++....+++..+|++|.+. +++.+
T Consensus 95 l~~~~ti-~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 95 LTPRARF-RYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp TEEEEEE-ECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CcEEEEE-eCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 5666677 5543 3456655554 77887788899999999764 45554
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.64 Score=41.43 Aligned_cols=140 Identities=9% Similarity=0.110 Sum_probs=77.5
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEEC----ceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFD----GAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSL 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~----G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~ 256 (376)
...+.+|+..++.|..+....... ....++.+. |.+...+.. ...|..+|+.+..- ..+.+..... .
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~--~ 149 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGTTSPIIIDAHAI--G 149 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCTTSCCCEEEEECCTT--C
T ss_pred CCEEEEEEcCCCceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecC-----CCcEEEEecCCCCceeeEEecCCCC--c
Confidence 457899999999887665332111 111233332 444433332 33788888876522 1111111110 0
Q ss_pred ceeEEEe--------------cCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeC---CcEEEE-
Q 048178 257 DVTLGIY--------------DQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKK---GAFFVE- 316 (376)
Q Consensus 257 ~~~l~~~--------------~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~- 316 (376)
-..+... ++.+.++... +..+.+|.+.. ..|.....+........-+++.++ +.+++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeC--CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 1122222 3666666654 67899999976 557777777322222344566666 676654
Q ss_pred EcCCeEEEEeCCCCc
Q 048178 317 SNSSQLLLYEPGTGE 331 (376)
Q Consensus 317 ~~~~~~~~yd~~t~~ 331 (376)
..++.+..||+++..
T Consensus 228 ~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ETTSCEEEEEESSTT
T ss_pred eCCCEEEEEeCCCCC
Confidence 567789999998863
No 30
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.42 E-value=1.3 Score=39.22 Aligned_cols=196 Identities=11% Similarity=0.069 Sum_probs=108.5
Q ss_pred cceEEEeec-----CCeEEEEecCccceee-cCCCC-CCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCC
Q 048178 109 CGIVFIEGL-----NNRITLWNIATRESVT-LPKYR-AIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCP 181 (376)
Q Consensus 109 ~Gll~~~~~-----~~~~~V~NP~T~~~~~-LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 181 (376)
+|++.+..+ ...+.++||.|++... ++... ....... .-++.++ ++...+.. ..
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~-----~~~i~~~---~~~lyv~~-----------~~ 62 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDV-----AQSMVIR---DGIGWIVV-----------NN 62 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSC-----EEEEEEE---TTEEEEEE-----------GG
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCcc-----ceEEEEE---CCEEEEEE-----------cC
Confidence 455555543 5678999999998754 21100 0000000 1234444 22222222 12
Q ss_pred cceEEEEEcCCCce-EeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCC-C
Q 048178 182 FSLVTVYNLSTNSW-RNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESS-L 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W-~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~-~ 256 (376)
...+.+++..|++- +.++.. . ....+. -+|.+|..... ...|..+|+++.+.. .++.+...... .
T Consensus 63 ~~~v~viD~~t~~~~~~i~~~----~-~p~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRITGF----T-SPRYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp GTEEEEEETTTCCEEEEEECC----S-SEEEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred CCEEEEEECcccEEEEEcCCC----C-CCcEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 45788999988764 333211 1 112332 57888766532 338999999988764 45665421110 1
Q ss_pred ceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC-----------CeEEEE
Q 048178 257 DVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS-----------SQLLLY 325 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~-----------~~~~~y 325 (376)
...++..+|+|++... .....+.++.++..+......++ ....-+.+.++|++++.... +.+..+
T Consensus 133 p~~i~~~~~~lyv~~~-~~~~~v~viD~~t~~~~~~i~~g---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 133 TEQMVQYGKYVYVNCW-SYQNRILKIDTETDKVVDELTIG---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp CCCEEEETTEEEEEEC-TTCCEEEEEETTTTEEEEEEECS---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred cceEEEECCEEEEEcC-CCCCEEEEEECCCCeEEEEEEcC---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 1245556777888865 12567777777765444333332 11223455668888877542 579999
Q ss_pred eCCCCcEE-EEEE
Q 048178 326 EPGTGELR-DFEL 337 (376)
Q Consensus 326 d~~t~~~~-~v~~ 337 (376)
|++++++. .+.+
T Consensus 209 d~~t~~v~~~~~~ 221 (328)
T 3dsm_A 209 DAETFTVEKQFKF 221 (328)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEEEec
Confidence 99999876 4554
No 31
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.13 E-value=0.59 Score=40.22 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=73.3
Q ss_pred EECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceee
Q 048178 213 YFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIK 291 (376)
Q Consensus 213 ~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~ 291 (376)
+.+|.+|--+.... ...|..+|+++.+. ..+++|+... .-.++..+++|+++... ...+-++..+. -.+
T Consensus 50 ~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~F---geGit~~g~~ly~ltw~--~~~v~v~D~~t--~~~ 119 (262)
T 3nol_A 50 YRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYF---GEGISDWKDKIVGLTWK--NGLGFVWNIRN--LRQ 119 (262)
T ss_dssp EETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCC---EEEEEEETTEEEEEESS--SSEEEEEETTT--CCE
T ss_pred EECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccc---eeEEEEeCCEEEEEEee--CCEEEEEECcc--CcE
Confidence 44777776665432 45899999998765 5567775432 13466778889999875 55555555554 556
Q ss_pred EEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEE-EEEE
Q 048178 292 QSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELR-DFEL 337 (376)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~-~v~~ 337 (376)
+.++ +... ...++..+|+ +++....+.+..+|++|.+.. .|.+
T Consensus 120 ~~ti-~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 120 VRSF-NYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp EEEE-ECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred EEEE-ECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 6666 5542 3345555555 666666788999999986544 4544
No 32
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=94.71 E-value=1.8 Score=37.01 Aligned_cols=188 Identities=7% Similarity=-0.039 Sum_probs=98.7
Q ss_pred eecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
..+|.+.+... ...++++|| +++...+..+... . ...++..|+... +... . .....+
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~----~----~~~~i~~~~~g~---l~v~-~---------~~~~~i 164 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKG----S----YPSFITLGSDNA---LWFT-E---------NQNNAI 164 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTT----C----CEEEEEECTTSC---EEEE-E---------TTTTEE
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCCC----C----CCceEEEcCCCC---EEEE-e---------CCCCEE
Confidence 34676666653 567899999 7766554322111 0 124666675432 2221 1 123467
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
.+|+. ++........ ... ....++.+ +|.+|+.. .. ...|..||. +.++..+.+|.... ....++.-
T Consensus 165 ~~~~~-~g~~~~~~~~-~~~-~~~~~i~~~~~g~l~v~~-~~----~~~i~~~~~-~g~~~~~~~~~~~~--~~~~i~~~ 233 (299)
T 2z2n_A 165 GRITE-SGDITEFKIP-TPA-SGPVGITKGNDDALWFVE-II----GNKIGRITT-SGEITEFKIPTPNA--RPHAITAG 233 (299)
T ss_dssp EEECT-TCCEEEEECS-STT-CCEEEEEECTTSSEEEEE-TT----TTEEEEECT-TCCEEEEECSSTTC--CEEEEEEC
T ss_pred EEEcC-CCcEEEeeCC-CCC-CcceeEEECCCCCEEEEc-cC----CceEEEECC-CCcEEEEECCCCCC--CceeEEEC
Confidence 77777 6666543211 111 11124444 47775443 32 347999999 77777666653221 11234443
Q ss_pred -cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCC-ceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 264 -DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFI-GIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 -~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
+|.|++.... ...+.+|..+ +.. ....+ +.. ....-+++ .+|.+++....+.+..||+++++++
T Consensus 234 ~~g~l~v~~~~--~~~i~~~d~~-g~~-~~~~~-~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 234 AGIDLWFTEWG--ANKIGRLTSN-NII-EEYPI-QIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp STTCEEEEETT--TTEEEEEETT-TEE-EEEEC-SSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-----
T ss_pred CCCCEEEeccC--CceEEEECCC-Cce-EEEeC-CCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcccCC
Confidence 5677776643 5667666653 322 12223 211 11233455 7888999876788999999988764
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.51 E-value=2.5 Score=37.82 Aligned_cols=190 Identities=9% Similarity=0.012 Sum_probs=100.7
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+++....+..+.|||..+++....-..... ... ...+.+.+..+.+-+.+ .....+.+++.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h--~~~-----v~~~~~~~~~~~~l~s~------------~~d~~i~iwd~ 148 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGP--GDA-----ITGMKFNQFNTNQLFVS------------SIRGATTLRDF 148 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCST--TCB-----EEEEEEETTEEEEEEEE------------ETTTEEEEEET
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCc--CCc-----eeEEEeCCCCCCEEEEE------------eCCCEEEEEEC
Confidence 555555567789999998876553322111 111 23555654332322222 12457888998
Q ss_pred CCCceEeccccCccccCCCCeE--EECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-
Q 048178 191 STNSWRNLKSIDYTMRLSSERT--YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS- 266 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~- 266 (376)
+++..+......... ....++ .-+|.+...+.. ...|..+|++.+....+..... .-..+... +|.
T Consensus 149 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~h~~----~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 149 SGSVIQVFAKTDSWD-YWYCCVDVSVSRQMLATGDS-----TGRLLLLGLDGHEIFKEKLHKA----KVTHAEFNPRCDW 218 (383)
T ss_dssp TSCEEEEEECCCCSS-CCEEEEEEETTTTEEEEEET-----TSEEEEEETTSCEEEEEECSSS----CEEEEEECSSCTT
T ss_pred CCCceEEEeccCCCC-CCeEEEEECCCCCEEEEECC-----CCCEEEEECCCCEEEEeccCCC----cEEEEEECCCCCC
Confidence 876665554221100 001122 224554433332 3478899987665554432111 11233333 444
Q ss_pred EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEee-CCcEEEE-EcCCeEEEEeCCCCcE
Q 048178 267 LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWK-KGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 267 L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~-~~~~~~~~yd~~t~~~ 332 (376)
+.+.+.. +..+.||.+.. ..-..+..+ .......-+++.. +|..++. ..++.+..||+++.+.
T Consensus 219 ~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 219 LMATSSV--DATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEET--TSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEEEeC--CCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 5555544 78999999987 112333334 2332344466677 7776654 5678899999987653
No 34
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.47 E-value=2.6 Score=37.82 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=75.7
Q ss_pred cceEEEEEcCCC--ceEeccccCccc-------cCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCC
Q 048178 182 FSLVTVYNLSTN--SWRNLKSIDYTM-------RLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCT 251 (376)
Q Consensus 182 ~~~~~vyss~t~--~W~~~~~~~~~~-------~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~ 251 (376)
.-.+..|+.+++ .|+.-...+... .....++..+|.+|.....+ .+.++|.++.+..+- +.+.
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g------~l~~~d~~tG~~~w~~~~~~- 269 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG------NLTALDLRSGQIMWKRELGS- 269 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS------CEEEEETTTCCEEEEECCCC-
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc------EEEEEECCCCcEEeeccCCC-
Confidence 346777888776 587543221110 02234677788888765433 799999977643332 3221
Q ss_pred CCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCC
Q 048178 252 LESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 252 ~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t 329 (376)
...+...++.+++... ...+..+..+. ..|.... + .......|+. .++.|++...++.++.+|+++
T Consensus 270 -----~~~~~~~~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~-~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 270 -----VNDFIVDGNRIYLVDQ---NDRVMALTIDGGVTLWTQSD-L-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp -----EEEEEEETTEEEEEET---TCCEEEEETTTCCEEEEECT-T-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred -----CCCceEECCEEEEEcC---CCeEEEEECCCCcEEEeecc-c-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 1345556777777664 33455555444 3354320 1 1121233332 367788888888899999999
Q ss_pred CcEEE
Q 048178 330 GELRD 334 (376)
Q Consensus 330 ~~~~~ 334 (376)
++...
T Consensus 338 G~~~~ 342 (376)
T 3q7m_A 338 GRFVA 342 (376)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 87653
No 35
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.46 E-value=1.1 Score=38.76 Aligned_cols=110 Identities=9% Similarity=0.040 Sum_probs=70.2
Q ss_pred ceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEE
Q 048178 216 GAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSS 294 (376)
Q Consensus 216 G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~ 294 (376)
|.+|--..... ...|..+|+++.+. ..+++|..... ..++..++.|+++... ...+.++-.+ .-..+.+
T Consensus 32 g~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fg---eGi~~~g~~lyv~t~~--~~~v~viD~~--t~~v~~~ 101 (266)
T 2iwa_A 32 DTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFG---EGLTLLNEKLYQVVWL--KNIGFIYDRR--TLSNIKN 101 (266)
T ss_dssp TEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCE---EEEEEETTEEEEEETT--CSEEEEEETT--TTEEEEE
T ss_pred CeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcce---EEEEEeCCEEEEEEec--CCEEEEEECC--CCcEEEE
Confidence 66776554321 45899999998765 45577654321 3455567789988874 5565555544 4566667
Q ss_pred ECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCc-EEEEEE
Q 048178 295 VGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGE-LRDFEL 337 (376)
Q Consensus 295 i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~-~~~v~~ 337 (376)
+ +.. .....++..+|+ +|+....+.+..+|++|.+ .+.+.+
T Consensus 102 i-~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 102 F-THQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp E-ECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred E-ECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 7 544 223455665655 7777767889999999976 445554
No 36
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.38 E-value=2.3 Score=42.64 Aligned_cols=192 Identities=7% Similarity=0.048 Sum_probs=98.9
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+++....++.+.|||..+++...+...... ... ...+.+.+..+.-.++... ....+.+++.
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h--~~~-----V~~l~~s~~~~~~~l~s~s-----------~Dg~I~vwd~ 84 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGP-----VWRVDWAHPKFGTILASCS-----------YDGKVLIWKE 84 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCC--SSC-----EEEEEECCTTSCSEEEEEE-----------TTSCEEEEEE
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCC--cCc-----eEEEEecCCCCCCEEEEEe-----------CCCeEEEEEC
Confidence 333344456678898774443332221111 111 2356665543232333321 2457899999
Q ss_pred CCCceEeccccCccccCCCCeEEEC----ceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEe--
Q 048178 191 STNSWRNLKSIDYTMRLSSERTYFD----GAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIY-- 263 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~~~----G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~-- 263 (376)
.++.|..+....... ....++.+. |.+...+.. ...|..+|+.+..- ....+..... .-..+...
T Consensus 85 ~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~-----dg~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~ 156 (753)
T 3jro_A 85 ENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPA 156 (753)
T ss_dssp ETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCSSSCCCCEEEECCSS--CEEEEEECCC
T ss_pred CCCcccccccccCCC-CCeEEEEECCCCCCCEEEEEeC-----CCcEEEEEeecCCCcceeEeecCCC--ceEEEEecCc
Confidence 998887665332111 111233332 444444433 33788888876521 1111111000 01122222
Q ss_pred ------------cCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeC---CcEEEE-EcCCeEEEE
Q 048178 264 ------------DQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKK---GAFFVE-SNSSQLLLY 325 (376)
Q Consensus 264 ------------~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~-~~~~~~~~y 325 (376)
+|.+.+++.. +..+.+|.+.. ..+.....+.....-..-+++.++ |.+++. ..++.+.+|
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp C---------CGGGCCEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred ccccccccccCCCCCEEEEEEC--CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 3556666554 67899999977 557777766322222344566666 676655 567789999
Q ss_pred eCCCC
Q 048178 326 EPGTG 330 (376)
Q Consensus 326 d~~t~ 330 (376)
|++++
T Consensus 235 d~~~~ 239 (753)
T 3jro_A 235 TQDNE 239 (753)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 99886
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.89 E-value=3.3 Score=36.89 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=98.6
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+-++.++....+..+.|||..+++...........+... ...+.+.+.. .+ ++.. .....+.
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~-----V~~v~~spdg-~~-l~sg-----------s~d~~i~ 152 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDI-----VSTVSVLSSG-TQ-AVSG-----------SKDICIK 152 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSC-----EEEEEECTTS-SE-EEEE-----------ETTSCEE
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCC-----EEEEEECCCC-CE-EEEE-----------eCCCeEE
Confidence 446777767777889999999887544322111111111 2345555432 32 2221 1245788
Q ss_pred EEEcCCCceE-eccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEEE
Q 048178 187 VYNLSTNSWR-NLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 187 vyss~t~~W~-~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~ 262 (376)
+++.+++.=. .+... . ....++.+ +|.-+.+.... ...|..+|+++.+-. .+..+.... ....+..
T Consensus 153 iwd~~~~~~~~~~~~h---~-~~V~~~~~~~~~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~ 222 (344)
T 4gqb_B 153 VWDLAQQVVLSSYRAH---A-AQVTCVAASPHKDSVFLSCSE----DNRILLWDTRCPKPASQIGCSAPGY--LPTSLAW 222 (344)
T ss_dssp EEETTTTEEEEEECCC---S-SCEEEEEECSSCTTEEEEEET----TSCEEEEETTSSSCEEECC----CC--CEEEEEE
T ss_pred EEECCCCcEEEEEcCc---C-CceEEEEecCCCCCceeeecc----ccccccccccccceeeeeecceeec--cceeeee
Confidence 8888876321 11111 0 01112222 33322333332 236888898876432 222221111 1122333
Q ss_pred e--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-EcCCeEEEEeCCCCcEEEE
Q 048178 263 Y--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 263 ~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~~~~~~~yd~~t~~~~~v 335 (376)
. ++.+.+.+.. +..+.||.+... ..+.++........-+++.++|. +++. ..++.+.+||.+++++.++
T Consensus 223 ~p~~~~~l~sg~~--dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 223 HPQQSEVFVFGDE--NGTVSLVDTKST--SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp CSSCTTEEEEEET--TSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred cCCCCcceEEecc--CCcEEEEECCCC--cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 2 3446555554 789999988762 22333311222234456666664 5554 5678899999999976554
No 38
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.31 E-value=3.7 Score=36.18 Aligned_cols=142 Identities=8% Similarity=0.043 Sum_probs=77.9
Q ss_pred eEEEEEcCCCceEeccccCccccCCCCeE--EECceEEEEeeecCCCCccEEEEEECCCceEeeecC-CCCCCCCCceeE
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTMRLSSERT--YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQG-PCTLESSLDVTL 260 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~l-P~~~~~~~~~~l 260 (376)
.+..++..+++++.+..... . .....+ .-+|.+|.....+. ...|..||+.+.+.+.+.. +.... ....+
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~-~-~~p~~~a~spdg~l~~~~~~~~---~~~v~~~~~~~g~~~~~~~~~~~~~--~p~~~ 91 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA-T-QNPTYLALSAKDCLYSVDKEDD---EGGIAAWQIDGQTAHKLNTVVAPGT--PPAYV 91 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE-C-SCCCCEEECTTCEEEEEEEETT---EEEEEEEEEETTEEEEEEEEEEESC--CCSEE
T ss_pred EEEEEcCCCCeEEEeeeeec-c-CCcceEEEccCCeEEEEEecCC---CceEEEEEecCCcEEEeeeeecCCC--CCEEE
Confidence 34444555677765432211 1 111222 23788777665321 3478999998777665522 21111 11234
Q ss_pred EEe-cCe-EEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCc----------eeeeEEEeeCCcEEEEEc-CCeEEEEe
Q 048178 261 GIY-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIG----------IFQPLLFWKKGAFFVESN-SSQLLLYE 326 (376)
Q Consensus 261 ~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~----------~~~~~~~~~~g~i~~~~~-~~~~~~yd 326 (376)
+.. +|+ |++.... ...+.+|.++. +....+..+ .... ...-+++.++|++++... .+.+..||
T Consensus 92 a~spdg~~l~~~~~~--~~~v~v~~~~~~g~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 92 AVDEARQLVYSANYH--KGTAEVMKIAADGALTLTDTV-QHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEETTTTEEEEEETT--TTEEEEEEECTTSCEEEEEEE-ECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCC--CCEEEEEEeCCCCCeeeccee-ecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 443 566 5554433 68999999975 555555554 2211 022256677888666543 56799999
Q ss_pred CC-CCcEEEE
Q 048178 327 PG-TGELRDF 335 (376)
Q Consensus 327 ~~-t~~~~~v 335 (376)
++ ++++..+
T Consensus 169 ~~~~g~~~~~ 178 (347)
T 3hfq_A 169 VSDAGQLSEQ 178 (347)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCcEEEe
Confidence 98 6666654
No 39
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=92.91 E-value=5 Score=35.93 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=98.0
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
....+|.|.+......++.+|+.|++.+.--........ ..... +. +|+.. ...-.
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-------~p~~~-----~~-~v~v~-----------~~~g~ 154 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS-------RPVVS-----DG-LVLIH-----------TSNGQ 154 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS-------CCEEE-----TT-EEEEE-----------CTTSE
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc-------CCEEE-----CC-EEEEE-----------cCCCe
Confidence 445688888888778899999999885421111111000 00111 11 22221 11347
Q ss_pred EEEEEcCCC--ceEeccccCcc-ccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eeee-cCCCCCCC----
Q 048178 185 VTVYNLSTN--SWRNLKSIDYT-MRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQEI-QGPCTLES---- 254 (376)
Q Consensus 185 ~~vyss~t~--~W~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~i-~lP~~~~~---- 254 (376)
+..|+.+++ .|+.-...+.. .......+..+|.+|.-.. ...+.++|.++.+ |+.- ..|.....
T Consensus 155 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 155 LQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT------TTEEEEEETTTCCEEEEEECCC----------
T ss_pred EEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC------CCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 788888777 48754322111 1112345666888776432 2379999987654 4332 22321110
Q ss_pred -CCceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCc
Q 048178 255 -SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 255 -~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~ 331 (376)
.........+|.+++... ...+..+..+. ..|... ......+ . ..++.+++...++.++.+|+++++
T Consensus 229 ~~~~~~p~~~~~~v~~~~~---~g~l~~~d~~tG~~~w~~~-----~~~~~~~-~-~~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAY---NGNLTALDLRSGQIMWKRE-----LGSVNDF-I-VDGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp -CCCCCCEEETTEEEEECT---TSCEEEEETTTCCEEEEEC-----CCCEEEE-E-EETTEEEEEETTCCEEEEETTTCC
T ss_pred cccCCCcEEECCEEEEEec---CcEEEEEECCCCcEEeecc-----CCCCCCc-e-EECCEEEEEcCCCeEEEEECCCCc
Confidence 011222344666666543 33455555444 335432 2212222 2 236778888888889999999987
Q ss_pred EEE
Q 048178 332 LRD 334 (376)
Q Consensus 332 ~~~ 334 (376)
...
T Consensus 299 ~~w 301 (376)
T 3q7m_A 299 TLW 301 (376)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 40
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.32 E-value=4.9 Score=34.47 Aligned_cols=197 Identities=10% Similarity=0.069 Sum_probs=106.2
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
++........++.+||.++ ...+..+.. . ..++.+|+... ++.. . .....+.+|+.
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~~-----~-----~~~l~~~~dg~---l~v~-~---------~~~~~i~~~d~ 97 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPSH-----H-----QNGHCLNKQGH---LIAC-S---------HGLRRLERQRE 97 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSCS-----S-----EEEEEECTTCC---EEEE-E---------TTTTEEEEECS
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCCC-----C-----cceeeECCCCc---EEEE-e---------cCCCeEEEEcC
Confidence 4444445677899999998 555433211 1 24677776443 2222 1 12457888888
Q ss_pred CCCceEeccccCcccc-CCCCeEEE--CceEEEEeee-c-----------CCCCccEEEEEECCCceEeeecCCCCCCCC
Q 048178 191 STNSWRNLKSIDYTMR-LSSERTYF--DGAFYWLLKL-E-----------NDNDNYVILSFHMAEEKFQEIQGPCTLESS 255 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lywl~~~-~-----------~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~ 255 (376)
.+++.+.+........ .....+.+ +|.+|+.... + .......|..+|.. .+...+.-...
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---- 172 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV---- 172 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS----
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC----
Confidence 8887765532111111 11122333 6777654210 0 00012378889887 44544421111
Q ss_pred CceeEEEe-cCeEEEEEecCCCCEEEEEEeCC-Cce-eeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcE
Q 048178 256 LDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK-KNW-IKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 256 ~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-~~W-~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~ 332 (376)
....++.. +|++. +.. .....+.+|.++. +.. .....+........-+++..+|.+++.. .+.+..||++++.+
T Consensus 173 ~~~gi~~s~dg~~l-v~~-~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSD-TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SEEEEEECTTSCEE-EEE-TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEE
T ss_pred CCccEEECCCCCEE-EEe-CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEE
Confidence 11234433 56655 333 3367888898874 555 3332221111112235666789999888 77899999998888
Q ss_pred EEEEEec
Q 048178 333 RDFELEC 339 (376)
Q Consensus 333 ~~v~~~~ 339 (376)
+.+....
T Consensus 250 ~~~~~~~ 256 (296)
T 3e5z_A 250 GRVLTPQ 256 (296)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 8776544
No 41
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.11 E-value=5.9 Score=34.88 Aligned_cols=202 Identities=9% Similarity=-0.038 Sum_probs=105.6
Q ss_pred eeeeeecceEEEee-cCCeEEEEecCcccee-ecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCC
Q 048178 103 SFKGLYCGIVFIEG-LNNRITLWNIATRESV-TLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 103 ~~~~s~~Gll~~~~-~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 180 (376)
.+..+.+|.+.+.+ ....+.++|+.|++.. .++.......... ..++.++ +..-.|.- . .
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~-----p~~i~~~---~~~lyv~~-~---------~ 149 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS-----TEQMVQY---GKYVYVNC-W---------S 149 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB-----CCCEEEE---TTEEEEEE-C---------T
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC-----cceEEEE---CCEEEEEc-C---------C
Confidence 34445678887777 5678999999998855 3443321000000 1123332 23222221 0 1
Q ss_pred CcceEEEEEcCCCceEe-ccccCccccCCCCeEE--ECceEEEEeeecCCCC-----ccEEEEEECCCceEe-eecCCCC
Q 048178 181 PFSLVTVYNLSTNSWRN-LKSIDYTMRLSSERTY--FDGAFYWLLKLENDND-----NYVILSFHMAEEKFQ-EIQGPCT 251 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~-----~~~i~~fD~~~e~~~-~i~lP~~ 251 (376)
....+.+++.++++... ++.. ..+ ..+. -+|.+|..+....... ...|..+|.++.+.. .+.+|..
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g--~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIG--IQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECS--SCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred CCCEEEEEECCCCeEEEEEEcC--CCc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 14588999999886532 2211 111 2222 3588766554321000 147999999988765 4577654
Q ss_pred CCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEee-CCcEEEEE-----cCCe
Q 048178 252 LESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWK-KGAFFVES-----NSSQ 321 (376)
Q Consensus 252 ~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~-~g~i~~~~-----~~~~ 321 (376)
.. ...++.. +|+ |+++.. .+.+|..+..+......+ +.. ...| +++.+ +|.+|+.. ..+.
T Consensus 225 ~~---p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~-~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 225 DW---PSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFL-EFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CC---CEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSB-CCC-SSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred CC---ceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeee-cCC-CCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 22 1455555 355 554321 344444443322111112 111 1234 45554 67798886 3567
Q ss_pred EEEEeCCCCcEEEEEE
Q 048178 322 LLLYEPGTGELRDFEL 337 (376)
Q Consensus 322 ~~~yd~~t~~~~~v~~ 337 (376)
+..||++.+.++++..
T Consensus 295 V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 295 VYRYSPQGKLIDEFYV 310 (328)
T ss_dssp EEEECTTCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEe
Confidence 9999999777777765
No 42
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=92.03 E-value=1.8 Score=37.23 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=69.2
Q ss_pred eEE-ECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCc
Q 048178 211 RTY-FDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKN 288 (376)
Q Consensus 211 ~v~-~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~ 288 (376)
++. .++.+|--+... ..|..+|+++.+. ..+ +|+... .-.++..+++|+++... ...+-++..+.
T Consensus 59 GL~~~~~~Ly~stG~~-----g~v~~iD~~Tgkv~~~~-l~~~~F---geGit~~g~~Ly~ltw~--~~~v~V~D~~T-- 125 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ-----GTLRQLSLESAQPVWME-RLGNIF---AEGLASDGERLYQLTWT--EGLLFTWSGMP-- 125 (268)
T ss_dssp EEEEETTEEEEEETTT-----TEEEECCSSCSSCSEEE-ECTTCC---EEEEEECSSCEEEEESS--SCEEEEEETTT--
T ss_pred eEEEECCEEEEEcCCC-----CEEEEEECCCCcEEeEE-CCCCcc---eeEEEEeCCEEEEEEcc--CCEEEEEECCc--
Confidence 443 456666555442 2599999998765 445 665321 13466677889999875 55555555544
Q ss_pred eeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEE-EEEE
Q 048178 289 WIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELR-DFEL 337 (376)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~-~v~~ 337 (376)
-.++.++ +... ...++..+|+ +++....+.+..+|++|.+.. .|.+
T Consensus 126 l~~~~ti-~~~~--eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 126 PQRERTT-RYSG--EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp TEEEEEE-ECSS--CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CcEEEEE-eCCC--ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 5566666 5442 2345555555 666666788999999997644 4554
No 43
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=91.47 E-value=7.9 Score=35.07 Aligned_cols=192 Identities=11% Similarity=0.099 Sum_probs=101.3
Q ss_pred eecceEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+.+|-+++... ...+.+||+.+++... ++... .. ...+.+++..+ + ++... .....
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~-~-l~~~~----------~~~~~ 235 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG-----KW-----SKILLYDPIRD-L-VYCSN----------WISED 235 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS-----SS-----EEEEEEETTTT-E-EEEEE----------TTTTE
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC-----CC-----eeEEEEcCCCC-E-EEEEe----------cCCCc
Confidence 44666655543 5788999998876543 33111 01 23566665433 2 22221 12457
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCC---CccEEEEEECCCceEeee-cCCCCCCCCCce
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDN---DNYVILSFHMAEEKFQEI-QGPCTLESSLDV 258 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~---~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~ 258 (376)
+.+|+.+++.....-... .. ..++.+ +|...+.+....+. ....|..+|+.+.+.... ..+.. ..
T Consensus 236 i~~~d~~~~~~~~~~~~~--~~--~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~ 306 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDKI--GL--PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN-----KR 306 (433)
T ss_dssp EEEEETTTTEEEEECCCC--SE--EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC-----EE
T ss_pred EEEEECCCCcEEEEecCC--CC--ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC-----cc
Confidence 889998887543221111 00 123333 56555555432110 134788999987755333 22211 12
Q ss_pred eEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEEc---------------CC
Q 048178 259 TLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESN---------------SS 320 (376)
Q Consensus 259 ~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~---------------~~ 320 (376)
.+... +|+ +++.... ...+.+|.++.. ..+..+ +...-..-+++.++|..+ +... ++
T Consensus 307 ~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~--~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMC--CSKIEVYDLKEK--KVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp EEEECSSTTEEEEEETT--TTEEEEEETTTT--EEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred eEEECCCCCEEEEEecC--CCEEEEEECCCC--cEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence 23322 454 5555444 789999998863 334444 232223446667778744 4433 24
Q ss_pred eEEEEeCCCCcEEE
Q 048178 321 QLLLYEPGTGELRD 334 (376)
Q Consensus 321 ~~~~yd~~t~~~~~ 334 (376)
.+..||+++++...
T Consensus 382 ~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 382 KVYVIDTTTDTVKE 395 (433)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEE
Confidence 89999999887554
No 44
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=91.31 E-value=7.6 Score=34.59 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=99.8
Q ss_pred eecc-eEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCG-IVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~G-ll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+.+| .+++.. ....+.+||+.+++....-.... . ...+.+++..+ +-++.- .....
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~------v~~~~~spdg~-~l~~~~-----------~~~~~ 97 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----S------PQGVAVSPDGK-QVYVTN-----------MASST 97 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----S------EEEEEECTTSS-EEEEEE-----------TTTTE
T ss_pred CCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC----C------ccceEECCCCC-EEEEEE-----------CCCCE
Confidence 3444 343343 46778999999988655322111 1 23566665433 222221 22457
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLG 261 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~ 261 (376)
+.+|+..++.-...-... ....++.+ +|...++.... ...|..+|+.+.+.... ..... ...+.
T Consensus 98 v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~ 164 (391)
T 1l0q_A 98 LSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNG----DKTVSVINTVTKAVINTVSVGRS-----PKGIA 164 (391)
T ss_dssp EEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEECCSS-----EEEEE
T ss_pred EEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCC----CCEEEEEECCCCcEEEEEecCCC-----cceEE
Confidence 899999887543221111 01123333 46544344333 34899999988766443 32211 12333
Q ss_pred Ee-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEE---cCCeEEEEeCCCCcEE
Q 048178 262 IY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES---NSSQLLLYEPGTGELR 333 (376)
Q Consensus 262 ~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~---~~~~~~~yd~~t~~~~ 333 (376)
.. +|+ |++.... ...+.+|.++..+ .+..+ +......-+++..+|+.+ +.. .++.+..||+++++..
T Consensus 165 ~~~dg~~l~~~~~~--~~~v~~~d~~~~~--~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 165 VTPDGTKVYVANFD--SMSISVIDTVTNS--VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp ECTTSSEEEEEETT--TTEEEEEETTTTE--EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEeCC--CCEEEEEECCCCe--EEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 32 454 4444433 6889999887743 33344 232223345666677744 444 4688999999987643
No 45
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=91.12 E-value=8.9 Score=35.03 Aligned_cols=185 Identities=8% Similarity=0.043 Sum_probs=99.2
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+++||..|++...+...+.. ...+.+.|.. .+ ++.... . .....+.+++.+++..+.+
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~----------~~~~~~spdg-~~-la~~~~---~-----~g~~~i~~~d~~~~~~~~l 262 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRH----------NGAPAFSPDG-SK-LAFALS---K-----TGSLNLYVMDLASGQIRQV 262 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSC----------EEEEEECTTS-SE-EEEEEC---T-----TSSCEEEEEETTTCCEEEC
T ss_pred cEEEEEECCCCcEEEeecCCCc----------ccCEEEcCCC-CE-EEEEEe---c-----CCCceEEEEECCCCCEEeC
Confidence 4789999999988766543211 2345555433 32 222211 1 2246788899988877665
Q ss_pred cccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ecCe-EEEEEec
Q 048178 199 KSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YDQS-LSLLLLD 273 (376)
Q Consensus 199 ~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~g~-L~l~~~~ 273 (376)
..... ....+.+ +|. +++....+. ...|..+|+.+.....+..... ....+.. -+|+ |+.....
T Consensus 263 ~~~~~----~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~~~~----~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 263 TDGRS----NNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp CCCSS----CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCCSSS----EEEEEEECTTSSEEEEEEEC
T ss_pred cCCCC----cccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEecCCC----cccCeEECCCCCEEEEEECc
Confidence 43211 1112222 565 443332221 3478888988776444322111 1112222 2666 4444443
Q ss_pred CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEEcCC---eEEEEeCCCCcEEEEEEe
Q 048178 274 TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESNSS---QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 274 ~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~~~---~~~~yd~~t~~~~~v~~~ 338 (376)
.....+.+|.++.++... +.... ....+++.++|..+ +...++ .++.+|++++..+++.-.
T Consensus 332 ~g~~~i~~~d~~~~~~~~---l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~ 396 (415)
T 2hqs_A 332 GGQQHIAKQDLATGGVQV---LSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 396 (415)
T ss_dssp SSCEEEEEEETTTCCEEE---CCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred CCceEEEEEECCCCCEEE---ecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence 334678888887754432 31111 23335667788744 444333 699999999988887543
No 46
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=91.10 E-value=6.9 Score=33.74 Aligned_cols=207 Identities=11% Similarity=0.093 Sum_probs=106.5
Q ss_pred cceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+|-|+..+ ....++.+||.+++...+..+. . ..++.+++..+ -+++. ...+.+
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~------~-----~~~i~~~~dG~--l~v~~-------------~~~l~~ 77 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA------P-----VSSVALRQSGG--YVATI-------------GTKFCA 77 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSS------C-----EEEEEEBTTSS--EEEEE-------------TTEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCC------c-----eEEEEECCCCC--EEEEE-------------CCeEEE
Confidence 45554444 4667899999998765543221 0 23566776544 22221 237888
Q ss_pred EEcCCCceEeccccCcccc-CCCCeEEE--CceEEEEeeecCC------CCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 188 YNLSTNSWRNLKSIDYTMR-LSSERTYF--DGAFYWLLKLEND------NDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lywl~~~~~~------~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
|+.+++.++.+.......+ .....+.+ +|.+|+-...... .....|..+|.....-....- .. ...
T Consensus 78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~--~pn 152 (297)
T 3g4e_A 78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VD--ISN 152 (297)
T ss_dssp EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ES--BEE
T ss_pred EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cc--ccc
Confidence 9999888876653321111 11112333 6886654432210 013468888876432221110 00 112
Q ss_pred eEEEe-cCe-EEEEEecCCCCEEEEEEeC--CCceeeE---EEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCC
Q 048178 259 TLGIY-DQS-LSLLLLDTVDHCFKIWVMQ--KKNWIKQ---SSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTG 330 (376)
Q Consensus 259 ~l~~~-~g~-L~l~~~~~~~~~l~vW~l~--~~~W~~~---~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~ 330 (376)
.++.. +|+ |+++... ...+.+|.++ ++..... ..+........-+++..+|.|++.. ..+.+..||++++
T Consensus 153 gi~~spdg~~lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEECTTSCEEEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred ceEEcCCCCEEEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 33433 454 6666554 5677777775 2443321 2221111112224445578899875 4567999999965
Q ss_pred c-EEEEEEecceEEEEEee
Q 048178 331 E-LRDFELECCWFSIYIYT 348 (376)
Q Consensus 331 ~-~~~v~~~~~~~~~~~y~ 348 (376)
+ +..+......+..+.|-
T Consensus 231 ~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp CEEEEEECSSSBEEEEEEE
T ss_pred eEEEEEECCCCCceEEEEe
Confidence 5 55666543334444443
No 47
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=90.72 E-value=8.7 Score=34.21 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=98.2
Q ss_pred eEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 111 IVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 111 ll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
.+++.. ....+.+||..+++....-... .. ...+.+++.. .+-++.- .....+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~----~~------~~~~~~s~dg-~~l~~~~-----------~~d~~i~v~d 60 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG----SN------PMGAVISPDG-TKVYVAN-----------AHSNDVSIID 60 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS----SS------EEEEEECTTS-SEEEEEE-----------GGGTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC----CC------cceEEECCCC-CEEEEEC-----------CCCCeEEEEE
Confidence 343443 3567899999998765422111 11 1345555433 2222221 1245788999
Q ss_pred cCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEe-cC
Q 048178 190 LSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY-DQ 265 (376)
Q Consensus 190 s~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~-~g 265 (376)
..+++-...-.... ...++.+ +|..-+++... ...|..+|+++.+.... ..... ...+... +|
T Consensus 61 ~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg 127 (391)
T 1l0q_A 61 TATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTSNTVAGTVKTGKS-----PLGLALSPDG 127 (391)
T ss_dssp TTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTS
T ss_pred CCCCeEEEEEECCC----CccceEECCCCCEEEEEECC----CCEEEEEECCCCeEEEEEeCCCC-----cceEEECCCC
Confidence 88875432211111 1123333 46544344332 34799999998765433 32211 1233333 55
Q ss_pred e-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEE-cCCeEEEEeCCCCcEEE
Q 048178 266 S-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 266 ~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~-~~~~~~~yd~~t~~~~~ 334 (376)
+ |++.... ...+.+|.++..+....... ..-...+++..+|+.+ +.. .++.+..||+++++...
T Consensus 128 ~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 128 KKLYVTNNG--DKTVSVINTVTKAVINTVSV---GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194 (391)
T ss_dssp SEEEEEETT--TTEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEeCC--CCEEEEEECCCCcEEEEEec---CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 5 4444433 77999999887554444333 1112445666677644 553 46789999999987554
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=90.55 E-value=10 Score=34.70 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCEEEEEEeCCCceeeEEEEC-CC-CceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEE
Q 048178 276 DHCFKIWVMQKKNWIKQSSVG-PF-IGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 276 ~~~l~vW~l~~~~W~~~~~i~-~~-~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
...+.||....++- +..+. +. ..+....++.++|.++....++.+.++|+++++.+|
T Consensus 377 ~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 377 LRTIDVFDGNSGKM--MCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTRK 435 (435)
T ss_dssp CCCEEEECSSSCCE--EEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC------
T ss_pred CCEEEEEECCCCcE--EEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeeeC
Confidence 45789998776432 23331 21 112334466778998888778889999999987654
No 49
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=90.09 E-value=8.2 Score=35.32 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=93.4
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+|.....+..+.|||..+++...+-.... +... ...+.+.|..+.+-+ .. .....+.+++.
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~g--H~~~-----V~~l~f~p~~~~~l~-s~-----------s~D~~v~iwd~ 194 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIG--AGGS-----ITGLKFNPLNTNQFY-AS-----------SMEGTTRLQDF 194 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCS--SSCC-----CCEEEECSSCTTEEE-EE-----------CSSSCEEEEET
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccC--CCCC-----EEEEEEeCCCCCEEE-EE-----------eCCCEEEEeec
Confidence 55555667788999998877543222111 1111 235666665555422 21 12456888888
Q ss_pred CCCceEeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-
Q 048178 191 STNSWRNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS- 266 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~- 266 (376)
+++.-+.+...... .....++. -+|.+...+.. ...|..+|++......+.. . ...-..+... ++.
T Consensus 195 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~~~~~~~~~~--h--~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 195 KGNILRVFASSDTI-NIWFCSLDVSASSRMVVTGDN-----VGNVILLNMDGKELWNLRM--H--KKKVTHVALNPCCDW 264 (435)
T ss_dssp TSCEEEEEECCSSC-SCCCCCEEEETTTTEEEEECS-----SSBEEEEESSSCBCCCSBC--C--SSCEEEEEECTTCSS
T ss_pred cCCceeEEeccCCC-CccEEEEEECCCCCEEEEEeC-----CCcEeeeccCcceeEEEec--c--cceEEeeeecCCCce
Confidence 87765544322111 11111222 24554444433 2368888887653322211 0 1011222222 444
Q ss_pred EEEEEecCCCCEEEEEEeCCCceeeEEE-ECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcE
Q 048178 267 LSLLLLDTVDHCFKIWVMQKKNWIKQSS-VGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 267 L~l~~~~~~~~~l~vW~l~~~~W~~~~~-i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~ 332 (376)
+++.+.. +..+.||.+...+-..... ......-..-+++..+|..++. ..++.+.+||.++...
T Consensus 265 ~~~s~s~--d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 265 FLATASV--DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp EEEEEET--TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred EEEEecC--cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 4444444 6789999887621111100 0011111222344567776654 5677899999987643
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=89.83 E-value=8.9 Score=32.97 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=99.1
Q ss_pred eecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-++.......+.|||..+++... +.......... ....+.+.+.. .+- +... ....+
T Consensus 60 ~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~-~~l-~~~~-----------~d~~i 121 (337)
T 1gxr_A 60 SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDN-----YIRSCKLLPDG-CTL-IVGG-----------EASTL 121 (337)
T ss_dssp CSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTS-----BEEEEEECTTS-SEE-EEEE-----------SSSEE
T ss_pred ecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCC-----cEEEEEEcCCC-CEE-EEEc-----------CCCcE
Confidence 445544444446788999988765321 11100000111 12356666532 322 2221 24578
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
.+|+.+++..+......... .....+.+ +|.....+.. ...|..+|+++.+... +..... .-..+..
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~-----dg~v~~~d~~~~~~~~~~~~~~~----~i~~~~~ 191 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCS-----DGNIAVWDLHNQTLVRQFQGHTD----GASCIDI 191 (337)
T ss_dssp EEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSS----CEEEEEE
T ss_pred EEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCceeeeeecccC----ceEEEEE
Confidence 99999888754432221110 01112222 4554444433 2368889998765433 222111 1123333
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEEEE
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~~v 335 (376)
. +|...++... +..+.+|.++..+ .+..+ ....-..-+++.++|..++ ...++.+..||+++++...+
T Consensus 192 ~~~~~~l~~~~~--dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 192 SNDGTKLWTGGL--DNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp CTTSSEEEEEET--TSEEEEEETTTTE--EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred CCCCCEEEEEec--CCcEEEEECCCCc--eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 3 5555555544 7889999988743 23333 2222234456666777555 45677899999999876554
No 51
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=89.61 E-value=12 Score=34.12 Aligned_cols=183 Identities=9% Similarity=0.092 Sum_probs=95.2
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+.+++....+..+.|||..+++...--.. .... ...+.+++ . .++... ....+.+
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~----h~~~-----v~~l~~~~---~-~l~s~s-----------~dg~i~v 237 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIH----HCEA-----VLHLRFNN---G-MMVTCS-----------KDRSIAV 237 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECC----CCSC-----EEEEECCT---T-EEEEEE-----------TTSCEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcC----CCCc-----EEEEEEcC---C-EEEEee-----------CCCcEEE
Confidence 345555556677899999998875432111 0111 23455542 2 222221 2457888
Q ss_pred EEcCCCceEe-ccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEecC
Q 048178 188 YNLSTNSWRN-LKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIYDQ 265 (376)
Q Consensus 188 yss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~~g 265 (376)
|+.+++.-.. ..... .......++..+|.....+.. ...|..+|+++.+... +.... ....-...+|
T Consensus 238 wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~ 306 (435)
T 1p22_A 238 WDMASPTDITLRRVLV-GHRAAVNVVDFDDKYIVSASG-----DRTIKVWNTSTCEFVRTLNGHK-----RGIACLQYRD 306 (435)
T ss_dssp EECSSSSCCEEEEEEC-CCSSCEEEEEEETTEEEEEET-----TSEEEEEETTTCCEEEEEECCS-----SCEEEEEEET
T ss_pred EeCCCCCCceeeeEec-CCCCcEEEEEeCCCEEEEEeC-----CCeEEEEECCcCcEEEEEcCCC-----CcEEEEEeCC
Confidence 8887753211 11010 011112345557765554443 3478999998765432 22111 1123334467
Q ss_pred eEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCc
Q 048178 266 SLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGE 331 (376)
Q Consensus 266 ~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~ 331 (376)
.+.+.+.. +..+.+|.+..+ ..+..+..... .+.++.-++..++ ...++.+.+||+++++
T Consensus 307 ~~l~~g~~--dg~i~iwd~~~~--~~~~~~~~h~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 307 RLVVSGSS--DNTIRLWDIECG--ACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TEEEEEET--TSCEEEEETTTC--CEEEEECCCSS--CEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred CEEEEEeC--CCeEEEEECCCC--CEEEEEeCCcC--cEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 66666654 788999998873 34444422221 1222222566554 4567889999987653
No 52
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=89.08 E-value=9.6 Score=32.29 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=105.2
Q ss_pred eecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-+.+.+ ....+.++|+..+....++........ .. ...++.++...+. ++.... .....+
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~-~~---~p~~i~~~~~~g~--l~v~~~---------~~~~~i 102 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQ-LL---YPNRVAVVRNSGD--IIVTER---------SPTHQI 102 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTC-BS---SEEEEEEETTTTE--EEEEEC---------GGGCEE
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCccc-cc---CceEEEEEcCCCe--EEEEcC---------CCCCEE
Confidence 4456666554 356789999986665555542211100 10 1245666433332 222110 013467
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
.+|+.....-+.+..... ....++.+ +|.+|.... . ...|..||...+....+..+.... ....++.-
T Consensus 103 ~~~d~~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~-~----~~~i~~~~~~g~~~~~~~~~~~~~--~p~~i~~~ 172 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGATIL---QHPRGVTVDNKGRIIVVEC-K----VMRVIIFDQNGNVLHKFGCSKHLE--FPNGVVVN 172 (286)
T ss_dssp EEECTTSCEEEEECTTTC---SCEEEEEECTTSCEEEEET-T----TTEEEEECTTSCEEEEEECTTTCS--SEEEEEEC
T ss_pred EEECCCCcEEEEecCccC---CCceEEEEeCCCCEEEEEC-C----CCEEEEEcCCCCEEEEeCCCCccC--CcEEEEEC
Confidence 778744433333321110 11123433 577665432 2 347999998776666554332211 11334443
Q ss_pred -cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEEc-CC-eEEEEeCCCCcEEEEEEe
Q 048178 264 -DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVESN-SS-QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 264 -~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~-~~-~~~~yd~~t~~~~~v~~~ 338 (376)
+|.+++.... ...+.+|..+. +. +..+.....+..| +++..+|.+++... .+ .+..||.+++.++.+...
T Consensus 173 ~~g~l~v~~~~--~~~i~~~~~~g-~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~ 247 (286)
T 1q7f_A 173 DKQEIFISDNR--AHCVKVFNYEG-QY--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK 247 (286)
T ss_dssp SSSEEEEEEGG--GTEEEEEETTC-CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred CCCCEEEEECC--CCEEEEEcCCC-CE--EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc
Confidence 5777776654 67788887653 22 2334211112233 45556788988865 33 899999988877777543
No 53
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=89.06 E-value=5.9 Score=35.12 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=84.0
Q ss_pred ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc-
Q 048178 116 GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS- 194 (376)
Q Consensus 116 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~- 194 (376)
.....+.|||..++.+..+-..... ... ...+.+.+.. .+- +... ....+.+|+..++.
T Consensus 30 ~~d~~i~iw~~~~~~~~~~~~~~~h--~~~-----v~~~~~s~~~-~~l-~s~s-----------~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 30 TATNQVELYEQDGNGWKHARTFSDH--DKI-----VTCVDWAPKS-NRI-VTCS-----------QDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSSCBCEEEEETTEEEECCCBCCC--SSC-----EEEEEECTTT-CCE-EEEE-----------TTSSEEEC------C
T ss_pred cCCCEEEEEEccCCceEEEEEEecC--Cce-----EEEEEEeCCC-CEE-EEEe-----------CCCeEEEEEcCCCCc
Confidence 3466779999998865444333211 111 2355665543 222 2211 14578888888876
Q ss_pred eEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCce----EeeecCCCCCCCCCceeEEEe-cCeE
Q 048178 195 WRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEK----FQEIQGPCTLESSLDVTLGIY-DQSL 267 (376)
Q Consensus 195 W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~----~~~i~lP~~~~~~~~~~l~~~-~g~L 267 (376)
|+......... .....+.+ +|.....+.. ...|..+|+++.+ ...+..|... .-..+... +|++
T Consensus 90 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 90 WKQTLVLLRLN-RAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQENDWWVSKHLKRPLRS---TILSLDWHPNNVL 160 (377)
T ss_dssp CCCEEECCCCS-SCEEEEECCTTSSCCEEEES-----SSCEEECCC-----CCCCEEECSSCCS---CEEEEEECTTSSE
T ss_pred eeeeeEecccC-CceEEEEECCCCCEEEEEec-----CCeEEEEEECCcccceeeeEeecccCC---CeEEEEEcCCCCE
Confidence 55433221111 11112222 3443333332 2367788887764 2233322111 11233333 4555
Q ss_pred EEEEecCCCCEEEEEEeCC---------Cce-------eeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCC
Q 048178 268 SLLLLDTVDHCFKIWVMQK---------KNW-------IKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTG 330 (376)
Q Consensus 268 ~l~~~~~~~~~l~vW~l~~---------~~W-------~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~ 330 (376)
.+.... +..+.+|.++. ..| ..+..+ .......-+++.++|..++ ...++.+..||++++
T Consensus 161 l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 161 LAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 555544 68899999863 112 122222 1211133455666777554 466788999999887
Q ss_pred cE
Q 048178 331 EL 332 (376)
Q Consensus 331 ~~ 332 (376)
+.
T Consensus 238 ~~ 239 (377)
T 3dwl_C 238 EQ 239 (377)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=89.05 E-value=12 Score=33.52 Aligned_cols=203 Identities=8% Similarity=0.020 Sum_probs=101.7
Q ss_pred ceEEEeecCCeEEEEecCccceeecC-CCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 110 GIVFIEGLNNRITLWNIATRESVTLP-KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
.+|+....+..+.|||..+++...-. .+.... .... .....+.+.+....+ ++... ....+.++
T Consensus 95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~--~~v~~~~~~p~~~~~-l~s~~-----------~dg~i~iw 159 (402)
T 2aq5_A 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHT--KRVGIVAWHPTAQNV-LLSAG-----------CDNVILVW 159 (402)
T ss_dssp TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCS--SCEEEEEECSSBTTE-EEEEE-----------TTSCEEEE
T ss_pred CEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCC--CeEEEEEECcCCCCE-EEEEc-----------CCCEEEEE
Confidence 35555566778999998887532200 000000 0000 012355565554332 22221 24578899
Q ss_pred EcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeec-CCCCCCCCCceeEEE-ec
Q 048178 189 NLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-GPCTLESSLDVTLGI-YD 264 (376)
Q Consensus 189 ss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~~l~~-~~ 264 (376)
+.+++.....-... .......++.+ +|.....+.. ...|..+|+.+.+....- ...... ....+.. -+
T Consensus 160 d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 231 (402)
T 2aq5_A 160 DVGTGAAVLTLGPD-VHPDTIYSVDWSRDGALICTSCR-----DKRVRVIEPRKGTVVAEKDRPHEGT--RPVHAVFVSE 231 (402)
T ss_dssp ETTTTEEEEEECTT-TCCSCEEEEEECTTSSCEEEEET-----TSEEEEEETTTTEEEEEEECSSCSS--SCCEEEECST
T ss_pred ECCCCCccEEEecC-CCCCceEEEEECCCCCEEEEEec-----CCcEEEEeCCCCceeeeeccCCCCC--cceEEEEcCC
Confidence 98887543211000 00111123333 4554444433 347999999886643321 221111 0123333 35
Q ss_pred CeEEEEEe-cCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEE-EEE-cCCeEEEEeCCCCc--EEEEE
Q 048178 265 QSLSLLLL-DTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES-NSSQLLLYEPGTGE--LRDFE 336 (376)
Q Consensus 265 g~L~l~~~-~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~-~~~~~~~yd~~t~~--~~~v~ 336 (376)
|.+.+++. ...+..+.||.+.. ..=.....+ ....-..-+++..+|..+ +.. .++.+.+||+++++ ++.+.
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 66655553 23478999999887 221223333 222223334556677755 455 47789999999887 66664
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=88.40 E-value=13 Score=33.12 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=94.5
Q ss_pred ceEEEeecCCeEEEEecCccc------eeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 110 GIVFIEGLNNRITLWNIATRE------SVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~------~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
.+++.......+.|||..+++ .......... .... ...+.+.+..+.+ ++.. ....
T Consensus 127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~-----v~~~~~~~~~~~~-l~~~-----------~~dg 188 (416)
T 2pm9_A 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-SVDE-----VISLAWNQSLAHV-FASA-----------GSSN 188 (416)
T ss_dssp TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-SSCC-----CCEEEECSSCTTE-EEEE-----------SSSS
T ss_pred CEEEEEcCCCeEEEEECCCCccccccccccccccccC-CCCC-----eeEEEeCCCCCcE-EEEE-----------cCCC
Confidence 355555556778999998876 2221111000 0111 2345565543333 2222 1245
Q ss_pred eEEEEEcCCCceEeccccCccc---cCCCCeEEE--Cc-eEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCc
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTM---RLSSERTYF--DG-AFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLD 257 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~---~~~~~~v~~--~G-~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~ 257 (376)
.+.+|+.+++.-...-...... ......+.+ +| .+...+..+. ....|..+|+.+..-....+...... .-
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~~~~i~~~d~~~~~~~~~~~~~~~~~-~v 265 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD--NDPSILIWDLRNANTPLQTLNQGHQK-GI 265 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS--SSCCCCEEETTSTTSCSBCCCSCCSS-CE
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC--CCceEEEEeCCCCCCCcEEeecCccC-ce
Confidence 7889998887543221111000 111122333 23 2333333211 01267888887642111112100000 11
Q ss_pred eeEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-cEEEE-EcCCeEEEEeCCCCc
Q 048178 258 VTLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-AFFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 258 ~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~-~~~~~~~~yd~~t~~ 331 (376)
..+... +|.+.+.... +..+.+|.++.. ..+..+........-+++.+++ .+++. ..++.+..||+++.+
T Consensus 266 ~~~~~s~~~~~~l~s~~~--dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGR--DNTVLLWNPESA--EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EEEEECSSCSSCEEEEES--SSEEEEECSSSC--CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred eEEEeCCCCCCeEEEEeC--CCCEEEeeCCCC--ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 233333 4566655554 788999998873 3344442222223346667777 66665 557889999998765
No 56
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=88.06 E-value=23 Score=35.37 Aligned_cols=194 Identities=10% Similarity=0.035 Sum_probs=99.1
Q ss_pred cceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 109 CGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
+|-|.+.....-++.+||.|+++..++.... .... ...+..|+.. - +.+.. ...+..|
T Consensus 417 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~--~~~~-----v~~i~~d~~g--~--lwigt-----------~~Gl~~~ 474 (781)
T 3v9f_A 417 EGNLWFGTYLGNISYYNTRLKKFQIIELEKN--ELLD-----VRVFYEDKNK--K--IWIGT-----------HAGVFVI 474 (781)
T ss_dssp TSCEEEEETTEEEEEECSSSCEEEECCSTTT--CCCC-----EEEEEECTTS--E--EEEEE-----------TTEEEEE
T ss_pred CCCEEEEeccCCEEEEcCCCCcEEEeccCCC--CCCe-----EEEEEECCCC--C--EEEEE-----------CCceEEE
Confidence 4444444433456778888887777654311 0111 1234444322 1 23322 2467888
Q ss_pred EcCCCceEeccccCc-ccc-CCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-e
Q 048178 189 NLSTNSWRNLKSIDY-TMR-LSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-Y 263 (376)
Q Consensus 189 ss~t~~W~~~~~~~~-~~~-~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~ 263 (376)
+..++.|+....... ... ....++.. +|. .|++..+ ..+..||..++++..+..+.......-..+.+ -
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFG-----GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS 548 (781)
T ss_dssp ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESS-----SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT
T ss_pred eCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcC-----CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC
Confidence 888888876543221 111 11123333 354 4666542 25889999999998875433322211233444 3
Q ss_pred cCeEEEEEecCCCCEE-EEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 048178 264 DQSLSLLLLDTVDHCF-KIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l-~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~ 336 (376)
+|.|.+.... .+ ..|..+..++.....-+ +-.. ..-+...++|.|++....+ +..||+++++++.+.
T Consensus 549 ~g~lWi~T~~----Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 549 KGQMWLATGE----GLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWASTNTG-ISCYITSKKCFYTYD 618 (781)
T ss_dssp TSCEEEEETT----EEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEECSSC-EEEEETTTTEEEEEC
T ss_pred CCCEEEEECC----CceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEcCCc-eEEEECCCCceEEec
Confidence 5666665431 22 22222223333221110 1111 2223334478899987665 999999999887764
No 57
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=87.91 E-value=12 Score=32.17 Aligned_cols=141 Identities=9% Similarity=0.083 Sum_probs=73.7
Q ss_pred cceEEEEEcC-CCceEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECC--CceEeee-cCCCCCCC
Q 048178 182 FSLVTVYNLS-TNSWRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMA--EEKFQEI-QGPCTLES 254 (376)
Q Consensus 182 ~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~--~e~~~~i-~lP~~~~~ 254 (376)
...+.+|+.. ++..+.+...... .....+.+ +|. +|..... ...|..||+. ++++..+ .++....
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~- 85 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRP-----EFRVLAYRIAPDDGALTFAAESALPGS- 85 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECTTSSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEECSSC-
T ss_pred CCeEEEEEECCCCcEEEeeeEecC--CCCceEEECCCCCEEEEeecC-----CCeEEEEEecCCCCceeeccccccCCC-
Confidence 4567777774 4555544322111 11123333 566 4443332 1367777766 6666544 2222111
Q ss_pred CCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEEEeCCC
Q 048178 255 SLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLLYEPGT 329 (376)
Q Consensus 255 ~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~yd~~t 329 (376)
...+... +|+ |++.... ...+.+|.+++ ........+ +......-+++..+|+ +++.. .++.+..||+++
T Consensus 86 --~~~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 86 --LTHISTDHQGQFVFVGSYN--AGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp --CSEEEECTTSSEEEEEETT--TTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --CcEEEEcCCCCEEEEEecC--CCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 1233333 555 4444433 67899999854 234444445 2222233356666776 55555 577899999988
Q ss_pred -CcEEEE
Q 048178 330 -GELRDF 335 (376)
Q Consensus 330 -~~~~~v 335 (376)
++++.+
T Consensus 161 ~~~~~~~ 167 (343)
T 1ri6_A 161 DGHLVAQ 167 (343)
T ss_dssp TSCEEEE
T ss_pred CCceeee
Confidence 766643
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=87.71 E-value=14 Score=32.41 Aligned_cols=192 Identities=13% Similarity=0.066 Sum_probs=92.7
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+++.......+.|||..++++..+-..... ... ...+.+.+. +.+-+.+- ....+.+|+.
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h--~~~-----v~~~~~~~~-~~~l~~~~------------~dg~i~vwd~ 81 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEH--NGQ-----VTGVDWAPD-SNRIVTCG------------TDRNAYVWTL 81 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECC--SSC-----EEEEEEETT-TTEEEEEE------------TTSCEEEEEE
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeecCC--CCc-----ccEEEEeCC-CCEEEEEc------------CCCeEEEEEC
Confidence 333334567789999998853222211111 111 235666653 33322221 1457889999
Q ss_pred CCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCce-E---eeecCCCCCCCCCceeEEEe-
Q 048178 191 STNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEK-F---QEIQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~-~---~~i~lP~~~~~~~~~~l~~~- 263 (376)
+++.+......... ......+.+ +|.....+..+ ..|..+|+.+.. + ..+..+... .-..+...
T Consensus 82 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~ 152 (372)
T 1k8k_C 82 KGRTWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRS---TVLSLDWHP 152 (372)
T ss_dssp ETTEEEEEEECCCC-SSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCS---CEEEEEECT
T ss_pred CCCeeeeeEEeecC-CCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeeecccCC---CeeEEEEcC
Confidence 88877654322111 111112222 35444444332 246666665443 2 222222111 11233333
Q ss_pred cCeEEEEEecCCCCEEEEEEeCC---------C-------ceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEe
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQK---------K-------NWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYE 326 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~---------~-------~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd 326 (376)
+|.+.+.... +..+.+|.+.. . .-..+..+........-+.+.++|..++ ...++.+..||
T Consensus 153 ~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TSSEEEEEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCCEEEEEcC--CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4555555544 67899999642 1 1223333311121233455566776554 46678899999
Q ss_pred CCCCcEE
Q 048178 327 PGTGELR 333 (376)
Q Consensus 327 ~~t~~~~ 333 (376)
+++++..
T Consensus 231 ~~~~~~~ 237 (372)
T 1k8k_C 231 ADKKMAV 237 (372)
T ss_dssp GGGTTEE
T ss_pred CCCCcee
Confidence 9877543
No 59
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=87.56 E-value=8.8 Score=33.38 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=62.3
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecC--CCCEEEEEEeCCCceee
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDT--VDHCFKIWVMQKKNWIK 291 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~--~~~~l~vW~l~~~~W~~ 291 (376)
+|.+||.... ...|..+|.++.++..+..+... ....++.. +|+|++..... ....+.+|..+...-..
T Consensus 55 ~g~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~---~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 55 QGQLFLLDVF-----EGNIFKINPETKEIKRPFVSHKA---NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp TSCEEEEETT-----TCEEEEECTTTCCEEEEEECSSS---SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCcEEEEeeCCCC---CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 6888876643 23799999998877665321111 11234443 66777776531 11455555544432221
Q ss_pred EEEECCCCceeeeEEEeeCCcEEEEEc-------CCeEEEEeCCCCcEEEE
Q 048178 292 QSSVGPFIGIFQPLLFWKKGAFFVESN-------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~g~i~~~~~-------~~~~~~yd~~t~~~~~v 335 (376)
...-........-+++.++|.+++... ...++.+|+++++++.+
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 211001111122345566788888754 35799999998877665
No 60
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=87.32 E-value=15 Score=32.35 Aligned_cols=183 Identities=11% Similarity=0.135 Sum_probs=91.6
Q ss_pred ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCce
Q 048178 116 GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSW 195 (376)
Q Consensus 116 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W 195 (376)
..+..+.|||..++++......... +... ...+.+.|. +.+- +.. .....+.+++..++.+
T Consensus 35 ~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~-----v~~~~~sp~-g~~l-~s~-----------s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 35 GGDRRIRIWGTEGDSWICKSVLSEG-HQRT-----VRKVAWSPC-GNYL-ASA-----------SFDATTCIWKKNQDDF 95 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECSS-CSSC-----EEEEEECTT-SSEE-EEE-----------ETTSCEEEEEECCC-E
T ss_pred cCCCeEEEEEcCCCcceeeeeeccc-cCCc-----EEEEEECCC-CCEE-EEE-----------ECCCcEEEEEccCCCe
Confidence 4456778999888765422111100 1111 235666653 2332 221 1244677888877766
Q ss_pred EeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCc-eEeee-cCCCCCCCCCceeEEEe-cCeEEEE
Q 048178 196 RNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEE-KFQEI-QGPCTLESSLDVTLGIY-DQSLSLL 270 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e-~~~~i-~lP~~~~~~~~~~l~~~-~g~L~l~ 270 (376)
+.+....... ....++.+ +|.+...+.. ...|..+|+.++ ....+ .+..... .-..+.-. +|.+.+.
T Consensus 96 ~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~-----D~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 96 ECVTTLEGHE-NEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEEEEECCCS-SCEEEEEECTTSSEEEEEET-----TSCEEEEEECTTSCEEEEEEECCCCS--CEEEEEECSSSSCEEE
T ss_pred EEEEEccCCC-CCceEEEEeCCCCEEEEEEC-----CCeEEEEECCCCCCeEEEEEecCcCC--CeEEEEECCCCCEEEE
Confidence 5443221111 01112322 3544333332 236777887653 22222 1111111 11222222 4555555
Q ss_pred EecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeC
Q 048178 271 LLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEP 327 (376)
Q Consensus 271 ~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~ 327 (376)
... +..+.+|..+...|....++........-+++.++|..++. ..++.+..||.
T Consensus 168 ~s~--d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 168 ASY--DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EeC--CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 544 67899999988888887777323323444666777876655 55677888875
No 61
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=86.86 E-value=15 Score=31.92 Aligned_cols=203 Identities=9% Similarity=-0.009 Sum_probs=104.5
Q ss_pred eecceEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
..++.+++... ...+.++|+.|++... ++........ ........++.+++..+ + ++.... .....
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~-~-l~~~~~---------~~~~~ 165 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE-EVRPLQPRELVADDATN-T-VYISGI---------GKESV 165 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS-SCCCCEEEEEEEETTTT-E-EEEEEE---------SSSCE
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc-ccCCCCCceEEECCCCC-E-EEEEec---------CCCce
Confidence 33444555544 5789999999988533 3332111100 00000123567776544 2 222211 12457
Q ss_pred EEEEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEEE
Q 048178 185 VTVYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~ 262 (376)
+.+++.+++.=. .++.. ......-.+.-+|...+++.. ...|..+|..+.+.. .+..+..........+..
T Consensus 166 i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAIQNT--GKMSTGLALDSEGKRLYTTNA-----DGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EEEEETTTTEEEEEECCC--CTTCCCCEEETTTTEEEEECT-----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred EEEEcCCCCceEEEecCC--CCccceEEECCCCCEEEEEcC-----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 888888876422 22101 010111123336664444433 237889999887654 345533211111123443
Q ss_pred e-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEEEeCCCCcEEE
Q 048178 263 Y-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 263 ~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~yd~~t~~~~~ 334 (376)
. +|+ |++.... ...+.+|.++..+-.....+ +.. .-+++..+|+ +++.. .++.+..||+++++...
T Consensus 239 s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~-~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 239 DTARQRAFITDSK--AAEVLVVDTRNGNILAKVAA-PES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp ETTTTEEEEEESS--SSEEEEEETTTCCEEEEEEC-SSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEeCC--CCEEEEEECCCCcEEEEEEc-CCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 3 455 6555433 67888998877444443333 221 2356677777 66665 46789999999887654
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=86.67 E-value=16 Score=32.01 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=44.3
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCC--CcEEEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGT--GELRDF 335 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t--~~~~~v 335 (376)
+|...+.... +..+.+|.++..+ .+..+.....-..-+++..+|.++....++.+..||+++ ++|..+
T Consensus 213 ~~~~l~~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 213 NGSRVAWVSH--DSTVCLADADKKM--AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp SSSEEEEEET--TTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEEC
T ss_pred CCCEEEEEeC--CCEEEEEECCCCc--eeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEe
Confidence 5555444444 7889999998743 333331122123445667788888877888899999998 776554
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.53 E-value=27 Score=34.61 Aligned_cols=191 Identities=15% Similarity=0.170 Sum_probs=97.7
Q ss_pred eecc-eEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCG-IVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~G-ll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+.+| +|+.......+.|||..+++... +.... .. ...+.+.+.. .+ ++.. .....
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~-----v~~~~~s~~~-~~-l~~~-----------~~dg~ 120 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-----DY-----IRSIAVHPTK-PY-VLSG-----------SDDLT 120 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS-----SC-----EEEEEECSSS-SE-EEEE-----------ETTSE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC-----CC-----EEEEEEeCCC-CE-EEEE-----------cCCCE
Confidence 3344 55555667889999999887644 22111 11 2345555433 22 2221 12457
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTL 260 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l 260 (376)
+.+|+..++ |........ ......++.+ +|.....+.. ...|..+|+.+..-.. +........ ..+
T Consensus 121 i~vw~~~~~-~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~v---~~~ 190 (814)
T 3mkq_A 121 VKLWNWENN-WALEQTFEG-HEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQSTPNFTLTTGQERGV---NYV 190 (814)
T ss_dssp EEEEEGGGT-SEEEEEEEC-CSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTCSSCSEEEECCCTTCC---CEE
T ss_pred EEEEECCCC-ceEEEEEcC-CCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcceeEEecCCCCCE---EEE
Confidence 888988776 222111100 0011123333 3444444433 3378899987654322 222211111 223
Q ss_pred EEe---cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 261 GIY---DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 261 ~~~---~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
... +|.+.++... +..+.+|.+...+ .+..+.....-...+++.++|.+++. ..++.+..||+.+++...
T Consensus 191 ~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 191 DYYPLPDKPYMITASD--DLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp EECCSTTCCEEEEECT--TSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred EEEECCCCCEEEEEeC--CCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 332 5555555544 6799999987733 33333212222344566677876655 557889999999876443
No 64
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=86.46 E-value=16 Score=32.05 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=65.5
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCC-CceeEEEe-cCeEEEEEecCCCCEEEEEEeCC--Cce
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESS-LDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK--KNW 289 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~-~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~--~~W 289 (376)
+|...++.... ...|..||+.+.++..+ .++...... ....+... +|+..++........+.||.++. +++
T Consensus 221 dg~~l~v~~~~----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~ 296 (361)
T 3scy_A 221 DGKFAYLINEI----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL 296 (361)
T ss_dssp TSSEEEEEETT----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE
T ss_pred CCCEEEEEcCC----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE
Confidence 57644444332 33688888877766544 222111110 11233333 66633333322257899999973 677
Q ss_pred eeEEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEE--EeCCCCcEEEEE
Q 048178 290 IKQSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLL--YEPGTGELRDFE 336 (376)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~--yd~~t~~~~~v~ 336 (376)
..+..+ +......-+++.++|+ +++.. ..+.+.+ +|+++++++.+.
T Consensus 297 ~~~~~~-~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 297 TKVGYQ-LTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EEEEEE-ECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EEeeEe-cCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 777776 3322233467777888 44544 3455555 688899888774
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=86.44 E-value=17 Score=32.20 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=90.3
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+.+|.++.......+.|||..+++............... ...+.+.|. +.+- +.. .....+.
T Consensus 103 s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~-----V~~v~~spd-g~~l-~sg-----------s~dg~v~ 164 (357)
T 4g56_B 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDI-----VKTLSVFSD-GTQA-VSG-----------GKDFSVK 164 (357)
T ss_dssp ETTTEEEEEETTSCEEEC--------CCCCEEECCCSSC-----EEEEEECSS-SSEE-EEE-----------ETTSCEE
T ss_pred cCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCC-----EEEEEECCC-CCEE-EEE-----------eCCCeEE
Confidence 446666666667788999999887654433221111111 234555543 2332 221 1245688
Q ss_pred EEEcCCCceEe-ccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 187 VYNLSTNSWRN-LKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 187 vyss~t~~W~~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
+++.+++.-.. +... . ....++.+ +|.-+.+.... ...|..+|+++.+-.. +....... ....+.-
T Consensus 165 iwd~~~~~~~~~~~~h---~-~~v~~v~~s~~~~~~~~s~~~----dg~v~~wd~~~~~~~~~~~~~~~~~--~v~~v~~ 234 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAH---S-SEVNCVAACPGKDTIFLSCGE----DGRILLWDTRKPKPATRIDFCASDT--IPTSVTW 234 (357)
T ss_dssp EEETTTTEEEEEECCC---S-SCEEEEEECTTCSSCEEEEET----TSCEEECCTTSSSCBCBCCCTTCCS--CEEEEEE
T ss_pred EEECCCCcEEEEEcCC---C-CCEEEEEEccCCCceeeeecc----CCceEEEECCCCceeeeeeeccccc--cccchhh
Confidence 88888764321 1111 0 01112322 23322233222 2367888887654322 12211111 1122332
Q ss_pred e--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-cEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 263 Y--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-AFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 263 ~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
. ++.+.+.... +..+.+|.+... ..+..+.....-..-+++..++ .++.. ..++.+.+||.++++.-+
T Consensus 235 sp~~~~~la~g~~--d~~i~~wd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 235 HPEKDDTFACGDE--TGNVSLVNIKNP--DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp CTTSTTEEEEEES--SSCEEEEESSCG--GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred hhcccceEEEeec--ccceeEEECCCC--cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 2 3445555544 678999998772 2223331112123345666565 45554 567789999999987654
No 66
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=86.36 E-value=23 Score=33.70 Aligned_cols=194 Identities=7% Similarity=-0.029 Sum_probs=103.3
Q ss_pred eecceEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+-+|.+++... ...+.|+|+.|++... ++... . ..++.++|.. .|-.+.- . .-.
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-----~------~~~v~~spdg-~~l~v~~-----------~-d~~ 201 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-----A------VHISRMSASG-RYLLVIG-----------R-DAR 201 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST-----T------EEEEEECTTS-CEEEEEE-----------T-TSE
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc-----c------cceEEECCCC-CEEEEEC-----------C-CCe
Confidence 34677766654 5678999999988543 33210 0 1245555533 3322221 1 257
Q ss_pred EEEEEc--CCCceEeccccCccccCCCCeEEE------CceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCC-
Q 048178 185 VTVYNL--STNSWRNLKSIDYTMRLSSERTYF------DGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLES- 254 (376)
Q Consensus 185 ~~vyss--~t~~W~~~~~~~~~~~~~~~~v~~------~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~- 254 (376)
+.+|+. .+++ .+...+... ...++.+ +|..-+.+... ...|..+|..+.+. ..++.+.....
T Consensus 202 V~v~D~~~~t~~--~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~~----~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 202 IDMIDLWAKEPT--KVAEIKIGI--EARSVESSKFKGYEDRYTIAGAYW----PPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EEEEETTSSSCE--EEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEE----SSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred EEEEECcCCCCc--EEEEEecCC--CcceEEeCCCcCCCCCEEEEEEcc----CCeEEEEeccccccceeecccCcccCc
Confidence 888988 5543 222111111 0123322 57655555433 34788999887554 44454321100
Q ss_pred -----C-CceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EE-cCCeEEEE
Q 048178 255 -----S-LDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ES-NSSQLLLY 325 (376)
Q Consensus 255 -----~-~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~-~~~~~~~y 325 (376)
. ....+... +|..+++.. .....+.+|..++.+=.++.++ +......-+++..+|+.++ .. ..+.+.++
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~-~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNV-KETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEE-CCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 0 11223333 355555554 3467888888877322233445 3332344577788888544 43 36789999
Q ss_pred eCCCCcEEE
Q 048178 326 EPGTGELRD 334 (376)
Q Consensus 326 d~~t~~~~~ 334 (376)
|.+++++..
T Consensus 352 D~~tg~l~~ 360 (543)
T 1nir_A 352 DSKDRRLSA 360 (543)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCeEEE
Confidence 999998665
No 67
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=85.65 E-value=10 Score=34.61 Aligned_cols=118 Identities=9% Similarity=0.038 Sum_probs=70.4
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeee---cC-C-----CCCCCCCceeEEEe--cCeEEEEEecC-----CCCE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI---QG-P-----CTLESSLDVTLGIY--DQSLSLLLLDT-----VDHC 278 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~l-P-----~~~~~~~~~~l~~~--~g~L~l~~~~~-----~~~~ 278 (376)
+|.++|....+ .+.++|+.++.-..+ .+ . ..........++.- .++||+..... ....
T Consensus 237 dG~~~~vs~~g------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 237 AGRLVWPTYTG------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp TTEEEEEBTTS------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred CCcEEEEeCCC------EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence 78888877643 699999987653322 10 0 00000001123333 34588865411 1235
Q ss_pred EEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-Ec-CCeEEEEeCCCCcEE-EEEEec
Q 048178 279 FKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SN-SSQLLLYEPGTGELR-DFELEC 339 (376)
Q Consensus 279 l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~-~~~~~~yd~~t~~~~-~v~~~~ 339 (376)
=+||+.+-..+..+.++ +...-..-+++..+|+ .++. .. .+.+.+||..|++.. .+...+
T Consensus 311 ~~V~viD~~t~kv~~~i-~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred CEEEEEECCCCeEEEEE-ECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 68999999888888888 6653233467777876 5444 33 678999999998644 454443
No 68
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=85.35 E-value=18 Score=31.35 Aligned_cols=54 Identities=9% Similarity=0.272 Sum_probs=35.4
Q ss_pred CCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCC----cEEE-EEcCCeEEEEeCCC
Q 048178 276 DHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKG----AFFV-ESNSSQLLLYEPGT 329 (376)
Q Consensus 276 ~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g----~i~~-~~~~~~~~~yd~~t 329 (376)
+..+.||.++. ..|..+..+........-+++.+++ .+++ ...++.+..||+++
T Consensus 188 D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 78899999976 6687776663222223344555544 4554 45678899999876
No 69
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=85.23 E-value=16 Score=30.79 Aligned_cols=192 Identities=11% Similarity=0.053 Sum_probs=98.9
Q ss_pred eeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 106 GLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 106 ~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
...+|-+.+.+. ...++++||. ++...++.+... . . ..++..|+.. . +... . .....
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~--~-~-----~~~i~~~~~g-~--l~v~-~---------~~~~~ 126 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD--S-G-----PYGITEGLNG-D--IWFT-Q---------LNGDR 126 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT--C-C-----EEEEEECSTT-C--EEEE-E---------TTTTE
T ss_pred ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC--C-C-----CccceECCCC-C--EEEE-c---------cCCCe
Confidence 345666666654 5678899998 665544322111 1 1 2466666533 2 2111 1 11345
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
+..|+.. +...... .+... ....++.. +|.+|+.. .. ...|..||. +.++..+.+|..... ...++.
T Consensus 127 i~~~~~~-g~~~~~~-~~~~~-~~~~~i~~d~~g~l~v~~-~~----~~~i~~~~~-~g~~~~~~~~~~~~~--~~~i~~ 195 (300)
T 2qc5_A 127 IGKLTAD-GTIYEYD-LPNKG-SYPAFITLGSDNALWFTE-NQ----NNSIGRITN-TGKLEEYPLPTNAAA--PVGITS 195 (300)
T ss_dssp EEEECTT-SCEEEEE-CSSTT-CCEEEEEECTTSSEEEEE-TT----TTEEEEECT-TCCEEEEECSSTTCC--EEEEEE
T ss_pred EEEECCC-CCEEEcc-CCCCC-CCceeEEECCCCCEEEEe-cC----CCeEEEECC-CCcEEEeeCCCCCCC--cceEEE
Confidence 6667666 5444332 11111 11123333 57766544 32 337999999 566666665543221 233444
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEEc-CCeEEEEeCCCCcEEEEEE
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVESN-SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~-~~~~~~yd~~t~~~~~v~~ 337 (376)
- +|.|++.... ...+.++.. ++..... .+ +.. ...| +++.++|.+++... .+.+..||+ ++++..+.+
T Consensus 196 d~~g~l~v~~~~--~~~i~~~~~-~g~~~~~-~~-~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 196 GNDGALWFVEIM--GNKIGRITT-TGEISEY-DI-PTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp CTTSSEEEEETT--TTEEEEECT-TCCEEEE-EC-SST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred CCCCCEEEEccC--CCEEEEEcC-CCcEEEE-EC-CCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence 3 5678777653 445555554 2444332 23 321 2234 44455788888864 478999999 456665544
No 70
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=84.96 E-value=17 Score=30.96 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=96.3
Q ss_pred cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceE
Q 048178 117 LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWR 196 (376)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~ 196 (376)
....++++||.+++...+..+...... . ...++.+|+..+. +.... . ...+.+|+.. +..+
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~-~----~~~~i~~~~~~g~--l~v~~----------~-~~~l~~~d~~-g~~~ 104 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGYG-G----IPAGCQCDRDANQ--LFVAD----------M-RLGLLVVQTD-GTFE 104 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTEE-C----CEEEEEECSSSSE--EEEEE----------T-TTEEEEEETT-SCEE
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCCC-C----CCceEEEecCCCc--EEEEE----------C-CCCEEEEeCC-CCEE
Confidence 356789999999887665431100000 0 1246666654222 22211 0 2267788887 6666
Q ss_pred ec-cccCcccc-CCCCeEEE--CceEEEEeeecC----------CCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 197 NL-KSIDYTMR-LSSERTYF--DGAFYWLLKLEN----------DNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 197 ~~-~~~~~~~~-~~~~~v~~--~G~lywl~~~~~----------~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
.+ ........ .....+.+ +|.+|+...... ......|..+|.. .++..+.-. .. ....++.
T Consensus 105 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~--~~~~i~~ 179 (314)
T 1pjx_A 105 EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQ--FPNGIAV 179 (314)
T ss_dssp ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ES--SEEEEEE
T ss_pred EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CC--CcceEEE
Confidence 54 32111111 11234444 577765443210 0001478889887 544433100 00 1123333
Q ss_pred e-----cCe-EEEEEecCCCCEEEEEEeC-CCceeeE---EEECCCC--ceeeeEEEeeCCcEEEEE-cCCeEEEEeCCC
Q 048178 263 Y-----DQS-LSLLLLDTVDHCFKIWVMQ-KKNWIKQ---SSVGPFI--GIFQPLLFWKKGAFFVES-NSSQLLLYEPGT 329 (376)
Q Consensus 263 ~-----~g~-L~l~~~~~~~~~l~vW~l~-~~~W~~~---~~i~~~~--~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t 329 (376)
. +|+ |++.... ...+.+|.++ ++..... ..+ +.. ....-+++.++|.+++.. ..+.+..||+++
T Consensus 180 ~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 180 RHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred ecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 3 343 5555433 5778888776 3444332 222 211 122234445578898875 467899999995
Q ss_pred Cc-EEEEEEe
Q 048178 330 GE-LRDFELE 338 (376)
Q Consensus 330 ~~-~~~v~~~ 338 (376)
++ .+.+...
T Consensus 257 g~~~~~~~~~ 266 (314)
T 1pjx_A 257 GQPKMRIRCP 266 (314)
T ss_dssp BSCSEEEECS
T ss_pred CcEeEEEeCC
Confidence 44 4455443
No 71
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.93 E-value=19 Score=31.43 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=97.8
Q ss_pred eeeeeecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCC-CCCeEEEEEEEEEecCCCCCC
Q 048178 103 SFKGLYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPK-TKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 103 ~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~-~~~ykvv~~~~~~~~~~~~~~ 180 (376)
.+.++.+|-+.+-+....+.++|..+++... +.... ... ...+.++|. .+.+- +.. .
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----v~~~~~~~~~~~~~l-~s~-----------s 146 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS----ANE-----IIYMYGHNEVNTEYF-IWA-----------D 146 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC----SSC-----EEEEECCC---CCEE-EEE-----------E
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC----CCC-----EEEEEcCCCCCCCEE-EEE-----------e
Confidence 4556677888777776777788888877332 21111 000 245666662 23332 222 1
Q ss_pred CcceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
....+.+|+.+++.-......... ....++.+ +|.+...+.. ...|..+|+++.+-....+...... .-.
T Consensus 147 ~dg~i~~wd~~~~~~~~~~~~~~~--~~i~~~~~~pdg~~lasg~~-----dg~i~iwd~~~~~~~~~~~~~~h~~-~v~ 218 (343)
T 3lrv_A 147 NRGTIGFQSYEDDSQYIVHSAKSD--VEYSSGVLHKDSLLLALYSP-----DGILDVYNLSSPDQASSRFPVDEEA-KIK 218 (343)
T ss_dssp TTCCEEEEESSSSCEEEEECCCSS--CCCCEEEECTTSCEEEEECT-----TSCEEEEESSCTTSCCEECCCCTTS-CEE
T ss_pred CCCcEEEEECCCCcEEEEEecCCC--CceEEEEECCCCCEEEEEcC-----CCEEEEEECCCCCCCccEEeccCCC-CEE
Confidence 245788899887754322111111 11123333 4554444332 3378899998765431222221111 112
Q ss_pred eEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCC--Cce---eeeEEEeeCCcEEEE-Ec-CCeEEEEeC--C
Q 048178 259 TLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPF--IGI---FQPLLFWKKGAFFVE-SN-SSQLLLYEP--G 328 (376)
Q Consensus 259 ~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~--~~~---~~~~~~~~~g~i~~~-~~-~~~~~~yd~--~ 328 (376)
.+.-. +|...+...+ . .+.||.+...+ ....+.++ ... ...+++..+|..++. .. ++.+.+|+. .
T Consensus 219 ~l~fs~~g~~l~s~~~--~-~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 219 EVKFADNGYWMVVECD--Q-TVVCFDLRKDV--GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEECTTSSEEEEEES--S-BEEEEETTSST--TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCEEEEEeC--C-eEEEEEcCCCC--cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 33333 4554444443 3 99999988721 11111110 000 123666778887766 33 677888877 4
Q ss_pred CCcEEE
Q 048178 329 TGELRD 334 (376)
Q Consensus 329 t~~~~~ 334 (376)
++.|+.
T Consensus 294 ~~~~~~ 299 (343)
T 3lrv_A 294 TKNWTK 299 (343)
T ss_dssp TCSEEE
T ss_pred ccceEe
Confidence 455765
No 72
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=84.90 E-value=16 Score=30.43 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=97.6
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
..+|-+.+.+....++++|+.++....++..... ...++.+|+... +... . .....+.
T Consensus 75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~---------~p~~i~~~~~g~---l~v~-~---------~~~~~i~ 132 (270)
T 1rwi_B 75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLN---------YPEGLAVDTQGA---VYVA-D---------RGNNRVV 132 (270)
T ss_dssp CTTCCEEEEETTTEEEEECTTCSCCEECCCCSCS---------SEEEEEECTTCC---EEEE-E---------GGGTEEE
T ss_pred CCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcC---------CCcceEECCCCC---EEEE-E---------CCCCEEE
Confidence 3466666665566789999988776655432211 124677776432 2222 1 1134666
Q ss_pred EEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-
Q 048178 187 VYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 187 vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~- 263 (376)
+|+.++......... .. ....++.+ +|.+|+.... ...|..||..+........... .....++.-
T Consensus 133 ~~~~~~~~~~~~~~~--~~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~ 201 (270)
T 1rwi_B 133 KLAAGSKTQTVLPFT--GL-NDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFTDI---TAPWGIAVDE 201 (270)
T ss_dssp EECTTCCSCEECCCC--SC-CSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCSSC---CSEEEEEECT
T ss_pred EEECCCceeEeeccc--cC-CCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeecccCC---CCceEEEECC
Confidence 776555443322111 11 11124444 5887665432 3479999988765543322111 112344443
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
+|.|++.... ...+.+|..+... . ..+ +...+..| +++.++|.+++.. ..+.+..|++..++
T Consensus 202 ~g~l~v~~~~--~~~v~~~~~~~~~-~--~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHN--TNQVVKLLAGSTT-S--TVL-PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETT--TSCEEEECTTCSC-C--EEC-CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCEEEEECC--CCcEEEEcCCCCc-c--eee-ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 4567777653 4566666655411 1 112 22222233 4445578888875 46789999887654
No 73
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=84.71 E-value=17 Score=30.66 Aligned_cols=188 Identities=11% Similarity=0.156 Sum_probs=99.9
Q ss_pred eecceEEEeec--CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL--NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
..+|-+.+.+. ...+.++|+..+....+...... . ..++.+|+.. . ++.. . .....
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~----~-----~~~i~~~~~g-~--l~v~-~---------~~~~~ 143 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQ----H-----PRGVTVDNKG-R--IIVV-E---------CKVMR 143 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCS----C-----EEEEEECTTS-C--EEEE-E---------TTTTE
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCC----C-----ceEEEEeCCC-C--EEEE-E---------CCCCE
Confidence 35777766663 56789999655444444332111 0 2467777643 2 2222 1 12456
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
+.+|+..+..-+.+... ... ....++.+ +|.+|..... ...|..||...+....+..+.... ....++.
T Consensus 144 i~~~~~~g~~~~~~~~~-~~~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~~--~p~~i~~ 214 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCS-KHL-EFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGITN--YPIGVGI 214 (286)
T ss_dssp EEEECTTSCEEEEEECT-TTC-SSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTSC--SEEEEEE
T ss_pred EEEEcCCCCEEEEeCCC-Ccc-CCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCccC--CCcEEEE
Confidence 77787655443333211 001 11124444 4776654332 348999999777666554332111 1233444
Q ss_pred e-cCeEEEEEecCCC-CEEEEEEeCCCceeeEEEECCCC-ceeeeEEEeeCCcEEEEEcCCeEEEEeCCC
Q 048178 263 Y-DQSLSLLLLDTVD-HCFKIWVMQKKNWIKQSSVGPFI-GIFQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~-~~l~vW~l~~~~W~~~~~i~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t 329 (376)
- +|.|++.... . ..+.+|..+ ++-...... ... ....-+++.++|.+++...++.+.+|+...
T Consensus 215 d~~G~l~v~~~~--~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 215 NSNGEILIADNH--NNFNLTIFTQD-GQLISALES-KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CTTCCEEEEECS--SSCEEEEECTT-SCEEEEEEE-SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CCCCCEEEEeCC--CCEEEEEECCC-CCEEEEEcc-cCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 3 6778877763 3 388888744 333322222 111 112335666788888887777888888754
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=84.34 E-value=23 Score=31.78 Aligned_cols=193 Identities=10% Similarity=0.037 Sum_probs=101.3
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
++..++.++.......+.|||..+++...+-.... ... ...+.+.+. +.+-++.- ....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~---~~~-----v~~v~~s~~-~~~l~~~~------------~dg~ 157 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDE---STY-----VASVKWSHD-GSFLSVGL------------GNGL 157 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCT---TCC-----EEEEEECTT-SSEEEEEE------------TTSC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCC---CCC-----EEEEEECCC-CCEEEEEC------------CCCe
Confidence 33334445555566789999999998766433321 111 235666652 33322221 1447
Q ss_pred EEEEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 185 VTVYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 185 ~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
+.+|+..++.-. .+... ......+..+|.+...+.. ...|..+|+....-....+..... .-..+...
T Consensus 158 i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~ 226 (401)
T 4aez_A 158 VDIYDVESQTKLRTMAGH----QARVGCLSWNRHVLSSGSR-----SGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWR 226 (401)
T ss_dssp EEEEETTTCCEEEEECCC----SSCEEEEEEETTEEEEEET-----TSEEEEEETTSSSCEEEEEECCSS--CEEEEEEC
T ss_pred EEEEECcCCeEEEEecCC----CCceEEEEECCCEEEEEcC-----CCCEEEEecccCcceeeEEcCCCC--CeeEEEEc
Confidence 888998876432 22111 1112345556765544433 347889998743221111111111 11223333
Q ss_pred -cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-cEEEEE---cCCeEEEEeCCCCcEE
Q 048178 264 -DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-AFFVES---NSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 -~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~---~~~~~~~yd~~t~~~~ 333 (376)
+|.+.+.+.. +..+.||.+... ..+..+........-+++..++ .+++.. .++.+..||+++++..
T Consensus 227 ~~~~~l~s~~~--d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 227 SDGLQLASGGN--DNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp TTSSEEEEEET--TSCEEEEETTCS--SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred CCCCEEEEEeC--CCeEEEccCCCC--CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 5555555554 688999998872 2333332222223445656555 466654 3788999999887644
No 75
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=83.62 E-value=38 Score=33.82 Aligned_cols=196 Identities=10% Similarity=0.095 Sum_probs=100.8
Q ss_pred ecce-EEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCGI-VFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~Gl-l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|- |.+.....-++++||.|++...++.......... ...+..|+... +.+.. ...+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~-----v~~i~~d~~g~----lwigt-----------~~Gl~ 474 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNEN-----VYAILPDGEGN----LWLGT-----------LSALV 474 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSC-----EEEEEECSSSC----EEEEE-----------SSCEE
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCe-----eEEEEECCCCC----EEEEe-----------cCcee
Confidence 4564 5555554567899999998877764211111111 23444554221 23322 13677
Q ss_pred EEEcCCCceEecccc--Ccccc-CCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeec-CCCC--CCCCCce
Q 048178 187 VYNLSTNSWRNLKSI--DYTMR-LSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-GPCT--LESSLDV 258 (376)
Q Consensus 187 vyss~t~~W~~~~~~--~~~~~-~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~--~~~~~~~ 258 (376)
+|+.+++.|+..... +.... ....+++. +|.+ |++... .+..||..++++ .+. .+.. .....-.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~------Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~ 546 (795)
T 4a2l_A 475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL-WIGGEE------GLSVFKQEGLDI-QKASILPVSNVTKLFTN 546 (795)
T ss_dssp EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE-EEEESS------CEEEEEEETTEE-EECCCSCSCGGGGSCEE
T ss_pred EEeCCCCeEEEccccccccccCCceEEEEEECCCCCE-EEEeCC------ceEEEeCCCCeE-EEecCCCCCCCCCCeeE
Confidence 899999988876532 11111 11123333 3444 555432 688999988887 442 1111 1111113
Q ss_pred eEEE-ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCc-eeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 048178 259 TLGI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIG-IFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 259 ~l~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~ 336 (376)
.+.+ -+|.|.+... . .+..|..+..++.....-+-++. ...-+...++|.|++... ..+..||+++++++.+.
T Consensus 547 ~i~~d~~g~lWigT~---~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~-~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 547 CIYEASNGIIWVGTR---E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN-RGISCFNPETEKFRNFT 621 (795)
T ss_dssp EEEECTTSCEEEEES---S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEC
T ss_pred EEEECCCCCEEEEeC---C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC-CceEEEcCCCCcEEEcC
Confidence 3444 3566776554 2 34445444444433211111111 122223334678999886 45999999999887653
No 76
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=83.44 E-value=21 Score=30.68 Aligned_cols=148 Identities=9% Similarity=0.115 Sum_probs=78.9
Q ss_pred cceEEEEEcCC-CceEecc--ccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECC--CceEe---ee-cCCC
Q 048178 182 FSLVTVYNLST-NSWRNLK--SIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMA--EEKFQ---EI-QGPC 250 (376)
Q Consensus 182 ~~~~~vyss~t-~~W~~~~--~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~--~e~~~---~i-~lP~ 250 (376)
...+.+|+..+ +....+. ............+.+ +|...+++... ...|..+|+. +..+. .+ .+|.
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~----~~~i~~~~~~~~~g~~~~~~~~~~~~~ 225 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL----NSSVDVWELKDPHGNIECVQTLDMMPE 225 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT----TTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC----CCEEEEEEecCCCCcEEEEeeccccCc
Confidence 45788898887 6665432 110000011112333 46533333322 3478888884 34332 23 3454
Q ss_pred CCCCCCce-eEEEe-cCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEE-EEE-cCCeEE
Q 048178 251 TLESSLDV-TLGIY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES-NSSQLL 323 (376)
Q Consensus 251 ~~~~~~~~-~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~-~~~~~~ 323 (376)
........ .+... +|+ |++.. .....+.+|.++. +.+..+..+ +......-+++.++|+.+ +.. .++.+.
T Consensus 226 ~~~~~~~~~~i~~s~dg~~l~v~~--~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 226 NFSDTRWAADIHITPDGRHLYACD--RTASLITVFSVSEDGSVLSKEGFQ-PTETQPRGFNVDHSGKYLIAAGQKSHHIS 302 (343)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCCEEEEEEE-ECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred cccccCCccceEECCCCCEEEEEe--cCCCEEEEEEEcCCCCceEEeeee-cCCCccceEEECCCCCEEEEecCCCCeEE
Confidence 32211112 23333 454 54443 3378999999984 567777777 433223446777788744 444 356677
Q ss_pred EE--eCCCCcEEEEE
Q 048178 324 LY--EPGTGELRDFE 336 (376)
Q Consensus 324 ~y--d~~t~~~~~v~ 336 (376)
+| |+++++++.+.
T Consensus 303 v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 303 VYEIVGEQGLLHEKG 317 (343)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCceeeEcc
Confidence 77 78888888774
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=83.43 E-value=22 Score=30.85 Aligned_cols=189 Identities=7% Similarity=0.044 Sum_probs=90.7
Q ss_pred cc-eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CG-IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+| +|+.......+.|||..+++...+..... . ...+.+.+..+.-.++... ....+.+
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~------v~~~~~~~~~~~~~l~~~~-----------~dg~i~v 155 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA----P------VKTIHWIKAPNYSCVMTGS-----------WDKTLKF 155 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSS----C------EEEEEEEECSSCEEEEEEE-----------TTSEEEE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeeccccC----c------eEEEEEEeCCCCCEEEEcc-----------CCCcEEE
Confidence 44 44545557788999999988766432111 1 2344442222222222221 2457888
Q ss_pred EEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceE--eeecCCCCCCCCCceeEEEe-
Q 048178 188 YNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF--QEIQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 188 yss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~--~~i~lP~~~~~~~~~~l~~~- 263 (376)
|+.+++.-. .+. .+ .....+...+....++.. ...+..+|+.+..- ..+..+..... ..+...
T Consensus 156 wd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 222 (368)
T 3mmy_A 156 WDTRSSNPMMVLQ-LP----ERCYCADVIYPMAVVATA-----ERGLIVYQLENQPSEFRRIESPLKHQH---RCVAIFK 222 (368)
T ss_dssp ECSSCSSCSEEEE-CS----SCEEEEEEETTEEEEEEG-----GGCEEEEECSSSCEEEEECCCSCSSCE---EEEEEEE
T ss_pred EECCCCcEEEEEe-cC----CCceEEEecCCeeEEEeC-----CCcEEEEEeccccchhhhccccccCCC---ceEEEcc
Confidence 888776311 111 10 111122223333333333 23678888876543 33332222211 222222
Q ss_pred cC----eEEEEEecCCCCEEEEEEeCCC-ceeeEEEECCCCc------------eeeeEEEeeCCcEEE-EEcCCeEEEE
Q 048178 264 DQ----SLSLLLLDTVDHCFKIWVMQKK-NWIKQSSVGPFIG------------IFQPLLFWKKGAFFV-ESNSSQLLLY 325 (376)
Q Consensus 264 ~g----~L~l~~~~~~~~~l~vW~l~~~-~W~~~~~i~~~~~------------~~~~~~~~~~g~i~~-~~~~~~~~~y 325 (376)
++ ...++... +..+.||.++.. .-..+..+..... -..-+++.++|..++ ...++.+.+|
T Consensus 223 ~~~~~~~~~~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 223 DKQNKPTGFALGSI--EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp CTTSCEEEEEEEET--TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred cCCCCCCeEEEecC--CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 11 12333333 789999999872 1111122211110 123345566777555 4567889999
Q ss_pred eCCCCcEE
Q 048178 326 EPGTGELR 333 (376)
Q Consensus 326 d~~t~~~~ 333 (376)
|+++++..
T Consensus 301 d~~~~~~~ 308 (368)
T 3mmy_A 301 DKDARTKL 308 (368)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEE
Confidence 99987543
No 78
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=83.26 E-value=21 Score=30.50 Aligned_cols=191 Identities=11% Similarity=0.042 Sum_probs=92.6
Q ss_pred cceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+.+|........++++|+.|++.+. ++...... . .....++.. . ++. .. ...+..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~---~------~~~~~~pdG-~--ilv-s~-----------~~~V~~ 60 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWE---C------NSVAATKAG-E--ILF-SY-----------SKGAKM 60 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCC---C------CEEEECTTS-C--EEE-EC-----------BSEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCC---C------cCeEECCCC-C--EEE-eC-----------CCCEEE
Confidence 3444444557788999999988543 33321000 1 122333322 2 222 11 345777
Q ss_pred EEcCCC-ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCC--CceeEE-Ee
Q 048178 188 YNLSTN-SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESS--LDVTLG-IY 263 (376)
Q Consensus 188 yss~t~-~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~--~~~~l~-~~ 263 (376)
|+.... .|+.-... ........+.-+|.++...... ...+++||.+.+....+.+....... ....+. ..
T Consensus 61 ~d~~G~~~W~~~~~~--~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 61 ITRDGRELWNIAAPA--GCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK 134 (276)
T ss_dssp ECTTSCEEEEEECCT--TCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred ECCCCCEEEEEcCCC--CccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC
Confidence 887322 47643210 0111112334567766554321 23688899866544444443221110 111122 23
Q ss_pred cCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCcE-EEEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGEL-RDFE 336 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~~-~~v~ 336 (376)
+|.+.++... ...+.+|..+. ..|. +.. +.... . ..+..+|.+++.. ..++++.+|++|+++ .++.
T Consensus 135 ~G~~lv~~~~--~~~v~~~d~~G~~~w~--~~~-~~~~~-~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 135 KGNYLVPLFA--TSEVREIAPNGQLLNS--VKL-SGTPF-S-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TSCEEEEETT--TTEEEEECTTSCEEEE--EEC-SSCCC-E-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEecC--CCEEEEECCCCCEEEE--EEC-CCCcc-c-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 6665555443 56677776663 3344 333 21111 1 2334578877764 456799999996543 4443
No 79
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=83.25 E-value=19 Score=29.96 Aligned_cols=191 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred eeecceEEE-e-ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 106 GLYCGIVFI-E-GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 106 ~s~~Gll~~-~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
-+.+|-+.+ . .....+.++|+-++....++...... ..++.+|+..+ +... . . ..
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------p~~i~~~~~g~---l~v~-~---------~-~~ 87 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ---------PQGLAVDGAGT---VYVT-D---------F-NN 87 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCS---------CCCEEECTTCC---EEEE-E---------T-TT
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCC---------cceeEECCCCC---EEEE-c---------C-CC
Confidence 344566665 5 34567889999887766654322111 13466665432 2221 1 1 33
Q ss_pred eEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
.+.+|+..++.-....... . ....++.+ +|.+|+.... ...|..+|..+......... ... ....++
T Consensus 88 ~i~~~d~~~~~~~~~~~~~--~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~-~~~--~p~~i~ 156 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFDG--L-NYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFT-GLN--DPDGVA 156 (270)
T ss_dssp EEEEECTTCSCCEECCCCS--C-SSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECCCC-SCC--SCCCEE
T ss_pred EEEEEeCCCceEeeeecCC--c-CCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeeccc-cCC--CceeEE
Confidence 6777877766444332110 0 11123333 5777655432 33788888766543322111 111 112344
Q ss_pred Ee-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEEc-CCeEEEEeCCCCcEEEEE
Q 048178 262 IY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVESN-SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 262 ~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~-~~~~~~yd~~t~~~~~v~ 336 (376)
.. +|+|++.... ...+.+|..+... ... . ....+..| +++..+|.+++... .+.+..||++++....+.
T Consensus 157 ~~~~g~l~v~~~~--~~~i~~~~~~~~~--~~~-~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~ 229 (270)
T 1rwi_B 157 VDNSGNVYVTDTD--NNRVVKLEAESNN--QVV-L-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP 229 (270)
T ss_dssp ECTTCCEEEEEGG--GTEEEEECTTTCC--EEE-C-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC
T ss_pred EeCCCCEEEEECC--CCEEEEEecCCCc--eEe-e-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec
Confidence 44 5777777653 4566666655421 111 1 11112233 44455778888864 567999999887655543
No 80
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=82.31 E-value=20 Score=29.74 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=95.6
Q ss_pred eecceEEEeecCCeEEEEecCc-cceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGLNNRITLWNIAT-RESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+-+|-.++......+++||..+ ++...+...... .. ...+.+.+.. .+ ++.... .. .....+
T Consensus 50 spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~------~~~~~~spdg-~~-l~~~~~---~~----~~~~~l 112 (297)
T 2ojh_A 50 SPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT--IC------NNDHGISPDG-AL-YAISDK---VE----FGKSAI 112 (297)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC--CB------CSCCEECTTS-SE-EEEEEC---TT----TSSCEE
T ss_pred CCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc--cc------ccceEECCCC-CE-EEEEEe---CC----CCcceE
Confidence 3445444444456789999999 887766543211 00 0123334332 22 222210 11 125677
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
.+++..++.-+.+..... ...+.+ +|. +++...... ...|..+|..+.....+..... ....+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 180 (297)
T 2ojh_A 113 YLLPSTGGTPRLMTKNLP-----SYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVETRLTHGEG----RNDGPDY 180 (297)
T ss_dssp EEEETTCCCCEECCSSSS-----EEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCEEECCCSSS----CEEEEEE
T ss_pred EEEECCCCceEEeecCCC-----ccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcceEcccCCC----ccccceE
Confidence 777777766555432211 111112 454 333333321 3467777777665544422111 1122333
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEE-EEEcC-----------CeEEEEeC
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESNS-----------SQLLLYEP 327 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~~-----------~~~~~yd~ 327 (376)
. +|+..++.. .....+.||.++. .. ...+.........+.+..+|+.+ +...+ ..++.||+
T Consensus 181 s~dg~~l~~~~-~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 181 SPDGRWIYFNS-SRTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp CTTSSEEEEEE-CTTSSCEEEEEETTSSC---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred CCCCCEEEEEe-cCCCCccEEEECCCCCC---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 2 565433333 1256788998873 22 22331122223335566678744 44322 45999999
Q ss_pred CCCcEEEEE
Q 048178 328 GTGELRDFE 336 (376)
Q Consensus 328 ~t~~~~~v~ 336 (376)
++++.+.+.
T Consensus 257 ~~~~~~~~~ 265 (297)
T 2ojh_A 257 DGGNVETLF 265 (297)
T ss_dssp TSCSCEEEE
T ss_pred CCCCceeee
Confidence 998876653
No 81
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=81.39 E-value=28 Score=30.81 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=95.0
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
.-+.+|.++.......+.+||..+++....-... ... ...+.+.+..+ + ++... ....
T Consensus 213 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~----~~~-----i~~~~~~~~~~-~-l~~~~-----------~d~~ 270 (425)
T 1r5m_A 213 EWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH----HGP-----ISVLEFNDTNK-L-LLSAS-----------DDGT 270 (425)
T ss_dssp EEEETTEEEEECGGGCEEEEETTCSSCSEEECCC----SSC-----EEEEEEETTTT-E-EEEEE-----------TTSC
T ss_pred EEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC----CCc-----eEEEEECCCCC-E-EEEEc-----------CCCE
Confidence 3355777777777778899999887543221110 111 23566665433 2 22221 1446
Q ss_pred EEEEEcCCCceE-eccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeE
Q 048178 185 VTVYNLSTNSWR-NLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTL 260 (376)
Q Consensus 185 ~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l 260 (376)
+.+|+.+++.-. .+... ......+.+ +| +.+.... ...|..+|+.+.+.... ..... .-..+
T Consensus 271 i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~--~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~----~i~~~ 336 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGH----SQSIVSASWVGDD--KVISCSM----DGSVRLWSLKQNTLLALSIVDGV----PIFAG 336 (425)
T ss_dssp EEEECSSSBSCSEEECCC----SSCEEEEEEETTT--EEEEEET----TSEEEEEETTTTEEEEEEECTTC----CEEEE
T ss_pred EEEEECCCCccceEecCC----CccEEEEEECCCC--EEEEEeC----CCcEEEEECCCCcEeEecccCCc----cEEEE
Confidence 788887765321 11111 001112222 45 3333333 34899999987654332 32111 11223
Q ss_pred EEe-cCeEEEEEecCCCCEEEEEEeCCCc------------------eeeEEEECCCC-c-eeeeEEEeeCCcEE-EEEc
Q 048178 261 GIY-DQSLSLLLLDTVDHCFKIWVMQKKN------------------WIKQSSVGPFI-G-IFQPLLFWKKGAFF-VESN 318 (376)
Q Consensus 261 ~~~-~g~L~l~~~~~~~~~l~vW~l~~~~------------------W~~~~~i~~~~-~-~~~~~~~~~~g~i~-~~~~ 318 (376)
... +|.+.++... +..+.||.++... +..+..+.... . -..-+.+..+|..+ ....
T Consensus 337 ~~s~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 337 RISQDGQKYAVAFM--DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EECTTSSEEEEEET--TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEcCCCCEEEEEEC--CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 332 4555555544 6789999987621 11445552121 1 23445556677755 4566
Q ss_pred CCeEEEEeCCC
Q 048178 319 SSQLLLYEPGT 329 (376)
Q Consensus 319 ~~~~~~yd~~t 329 (376)
++.+..||++.
T Consensus 415 dg~i~iw~~~g 425 (425)
T 1r5m_A 415 LQEGSVVAIPG 425 (425)
T ss_dssp SSCCEEEECCC
T ss_pred CceEEEEeecC
Confidence 77799998763
No 82
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=81.29 E-value=26 Score=30.33 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=56.1
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC---CceeeEEEECCCCceeeeE
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK---KNWIKQSSVGPFIGIFQPL 305 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~---~~W~~~~~i~~~~~~~~~~ 305 (376)
..+..||..+.+...+.-. .. ....++.. +|+ |++.... ...+.++.++. ........+ + . ..-+
T Consensus 165 g~v~~~d~~~~~~~~~~~~--~~--~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~-~--g-P~gi 234 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE--LH--VPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKI-P--N-PGNI 234 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE--ES--CCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEEC-S--S-EEEE
T ss_pred ceEEEEeCCCCEEEEeccC--Cc--cCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeC-C--C-CCCe
Confidence 4699999987766544100 00 01234443 455 6666553 46666666654 334333332 2 1 2224
Q ss_pred EEeeCCcEEEEEcC-----------CeEEEEeCCCCcEEEEEEe
Q 048178 306 LFWKKGAFFVESNS-----------SQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 306 ~~~~~g~i~~~~~~-----------~~~~~yd~~t~~~~~v~~~ 338 (376)
++..+|.|++.... +.+..||++.+.++.+...
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~ 278 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP 278 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC
Confidence 44557888887543 5699999988877777654
No 83
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=81.28 E-value=26 Score=30.39 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=79.2
Q ss_pred cceEEEEEcC-CCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee----cCCCCCCC
Q 048178 182 FSLVTVYNLS-TNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI----QGPCTLES 254 (376)
Q Consensus 182 ~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i----~lP~~~~~ 254 (376)
...+.+|+.. ++....+.............+.+ +|...+++....+ ...+..+|..+.++..+ ..|.....
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~--~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS--QIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC--EEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 4578889988 56655433211100001112222 6763334333211 22344444435665433 23432211
Q ss_pred CCc-eeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-CceeeEEEECCC-CceeeeEEEeeCCc-EEEEEc-CCeEEEE--
Q 048178 255 SLD-VTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPF-IGIFQPLLFWKKGA-FFVESN-SSQLLLY-- 325 (376)
Q Consensus 255 ~~~-~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~-~~~~~~~~~~~~g~-i~~~~~-~~~~~~y-- 325 (376)
... ..++.. +|+ |++.... ...+.+|.++. +.+..+..+ +. .....-+++.++|+ +++... .+.+.+|
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 111 223333 666 6555544 68899999985 567777666 33 22234467777887 555544 4667777
Q ss_pred eCCCCcEEEEEE
Q 048178 326 EPGTGELRDFEL 337 (376)
Q Consensus 326 d~~t~~~~~v~~ 337 (376)
|.++++++.+.-
T Consensus 316 d~~tg~l~~~~~ 327 (347)
T 3hfq_A 316 DLTSGKLSLLQK 327 (347)
T ss_dssp CTTTCCEEEEEE
T ss_pred eCCCCeEEeccc
Confidence 888999988754
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=81.08 E-value=3.7 Score=36.51 Aligned_cols=139 Identities=4% Similarity=0.057 Sum_probs=69.5
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCce-Eeee-cCCCCCCCCCc
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEK-FQEI-QGPCTLESSLD 257 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~-~~~i-~lP~~~~~~~~ 257 (376)
...+.+|+..++.|+.+........ ...++.+ +|.+...+.. ...|..+|+.+.. +... .+..... .-
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~-----d~~v~vwd~~~~~~~~~~~~~~~~~~--~v 103 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQ-----DRNAYVYEKRPDGTWKQTLVLLRLNR--AA 103 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCCSS-CEEEEEECTTTCCEEEEET-----TSSEEEC------CCCCEEECCCCSS--CE
T ss_pred CCEEEEEEccCCceEEEEEEecCCc-eEEEEEEeCCCCEEEEEeC-----CCeEEEEEcCCCCceeeeeEecccCC--ce
Confidence 4578888988888877664432111 1112222 3443333322 2368888888766 3322 2211111 11
Q ss_pred eeEEEe-cCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECC-CCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCC
Q 048178 258 VTLGIY-DQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGP-FIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTG 330 (376)
Q Consensus 258 ~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~-~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~ 330 (376)
..+... +|++.+.... +..+.+|.++. ..|.....+.. ......-+++.+++.+++. ..++.+..||++++
T Consensus 104 ~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 104 TFVRWSPNEDKFAVGSG--ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp EEEECCTTSSCCEEEES--SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCS
T ss_pred EEEEECCCCCEEEEEec--CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEec
Confidence 222222 5555555544 67899999988 55777766632 2323444566667776654 56778999998643
No 85
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=81.00 E-value=26 Score=30.19 Aligned_cols=205 Identities=8% Similarity=0.023 Sum_probs=104.1
Q ss_pred eecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-+.+.+ ....++++|+.+++...+..... . . ..++.+|+..+ ++.... ... .....+
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~-~-----~~~i~~~~dg~---l~v~~~--~~~----~~~~~i 114 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---A-N-----PAAIKIHKDGR---LFVCYL--GDF----KSTGGI 114 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---S-S-----EEEEEECTTSC---EEEEEC--TTS----SSCCEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC---C-C-----cceEEECCCCc---EEEEeC--CCC----CCCceE
Confidence 3466665543 45678999999988766532111 1 1 24666775532 222211 000 012467
Q ss_pred EEEEcCCCceEec-cccCccccCCCCeEEE--CceEEEEeeecC-CCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 186 TVYNLSTNSWRNL-KSIDYTMRLSSERTYF--DGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 186 ~vyss~t~~W~~~-~~~~~~~~~~~~~v~~--~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
.+|+..++.-+.+ ..... ......+.+ +|.+|....... ......|..+|.++.+...+.- ... ....++
T Consensus 115 ~~~d~~~~~~~~~~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~--~~~~i~ 188 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLST--AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS--VANGIA 188 (333)
T ss_dssp EEECTTSCSCEEEECSSSS--CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES--SEEEEE
T ss_pred EEEeCCCCEEEEEEccCcc--CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC--cccceE
Confidence 7888877765422 11110 011122333 577665443210 0012478899988766654421 000 112333
Q ss_pred Ee-cCe-EEEEEecCCCCEEEEEEeCC--CceeeE-----EEECCCCceeeeEEEeeCCcEEEEEc-CCeEEEEeCCCCc
Q 048178 262 IY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQ-----SSVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGE 331 (376)
Q Consensus 262 ~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~-----~~i~~~~~~~~~~~~~~~g~i~~~~~-~~~~~~yd~~t~~ 331 (376)
.. +|+ |++.... ...+.+|.++. ...... ... +-.....-+++.++|.+++... .+.+..||++++.
T Consensus 189 ~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~ 265 (333)
T 2dg1_A 189 LSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP 265 (333)
T ss_dssp ECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred ECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEec-CCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCE
Confidence 33 555 6665543 56788888853 222211 111 1111223355566788888764 5779999998777
Q ss_pred EEEEEEe
Q 048178 332 LRDFELE 338 (376)
Q Consensus 332 ~~~v~~~ 338 (376)
++.+...
T Consensus 266 ~~~~~~~ 272 (333)
T 2dg1_A 266 IGQILIP 272 (333)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 7777543
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=80.81 E-value=32 Score=31.03 Aligned_cols=195 Identities=9% Similarity=0.074 Sum_probs=99.8
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
|.+++|.+.. ++.++|||..|++...+-..... ... ...+.+.+. +.|-+++- ....+.
T Consensus 114 S~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~--~~~-----V~sv~fspd-g~~lasgs------------~Dg~v~ 172 (420)
T 4gga_A 114 SSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP--GEY-----ISSVAWIKE-GNYLAVGT------------SSAEVQ 172 (420)
T ss_dssp CTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST--TCC-----EEEEEECTT-SSEEEEEE------------TTSCEE
T ss_pred CCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC--CCc-----EEEEEECCC-CCEEEEEE------------CCCeEE
Confidence 5677776554 57789999999987664332211 111 235666553 34433321 245788
Q ss_pred EEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ec
Q 048178 187 VYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YD 264 (376)
Q Consensus 187 vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~ 264 (376)
+++.+++.-. ..... .....++..+|.+-..+.. ...+..+|..........+...... ...+.. -+
T Consensus 173 iWd~~~~~~~~~~~~h----~~~v~~~s~~~~~l~sgs~-----d~~i~~~d~~~~~~~~~~~~~h~~~--~~~~~~~~~ 241 (420)
T 4gga_A 173 LWDVQQQKRLRNMTSH----SARVGSLSWNSYILSSGSR-----SGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPD 241 (420)
T ss_dssp EEETTTTEEEEEECCC----SSCEEEEEEETTEEEEEET-----TSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTT
T ss_pred EEEcCCCcEEEEEeCC----CCceEEEeeCCCEEEEEeC-----CCceeEeeecccceeeEEecccccc--eeeeeecCC
Confidence 9998876421 11111 1112345556655443332 3467777776544332222111111 122222 24
Q ss_pred CeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeC-CcEEEE-E--cCCeEEEEeCCCCcEEEE
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKK-GAFFVE-S--NSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~-g~i~~~-~--~~~~~~~yd~~t~~~~~v 335 (376)
|...+.... +..+.||.... ..+..+............+++... +.++.. . .++.+..||+++++....
T Consensus 242 g~~l~s~~~--D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 242 GRHLASGGN--DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp SSEEEEEET--TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred CCeeeeeec--cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 555544444 68899998876 233333333122222333444443 345543 2 357799999999875543
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=80.56 E-value=31 Score=30.76 Aligned_cols=187 Identities=10% Similarity=0.007 Sum_probs=91.4
Q ss_pred cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceE
Q 048178 117 LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWR 196 (376)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~ 196 (376)
..+.+.|||........-+......+.. ....+.+.+..+.+-+.+- ....+.+|+..++...
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~~p~~~~~l~s~s------------~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTA-----PVLDIAWCPHNDNVIASGS------------EDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSS-----CEEEEEECTTCTTEEEEEE------------TTSEEEEEECCTTCCS
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCC-----CEEEEEeCCCCCCEEEEEe------------CCCeEEEEEccCCCCc
Confidence 3567899997543221101111111111 1346777764444333321 2457899998887442
Q ss_pred ecc-ccCcccc---CCCCeEEE--Cc-eEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEe-cCeE
Q 048178 197 NLK-SIDYTMR---LSSERTYF--DG-AFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY-DQSL 267 (376)
Q Consensus 197 ~~~-~~~~~~~---~~~~~v~~--~G-~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~-~g~L 267 (376)
... .....+. .....+.+ +| .+...+.. ...|..+|+++.+.... ...... . .-..+... +|.+
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-----DNVILVWDVGTGAAVLTLGPDVHP-D-TIYSVDWSRDGAL 190 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----TSCEEEEETTTTEEEEEECTTTCC-S-CEEEEEECTTSSC
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----CCEEEEEECCCCCccEEEecCCCC-C-ceEEEEECCCCCE
Confidence 110 0100111 11112333 23 23333332 23688999988765332 211111 1 11233333 5665
Q ss_pred EEEEecCCCCEEEEEEeCCCceeeEEEE-CCCCce-eeeEEEeeCCcEEEEE----cCCeEEEEeCCCCc
Q 048178 268 SLLLLDTVDHCFKIWVMQKKNWIKQSSV-GPFIGI-FQPLLFWKKGAFFVES----NSSQLLLYEPGTGE 331 (376)
Q Consensus 268 ~l~~~~~~~~~l~vW~l~~~~W~~~~~i-~~~~~~-~~~~~~~~~g~i~~~~----~~~~~~~yd~~t~~ 331 (376)
.+.... +..+.||.+...+ .+..+ ...... ..-+.+..+|.+++.. .++.+..||+++.+
T Consensus 191 l~~~~~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 191 ICTSCR--DKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEET--TSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEEec--CCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 555554 7899999998743 23333 122211 2334556678877765 56789999998854
No 88
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=80.39 E-value=32 Score=30.71 Aligned_cols=192 Identities=8% Similarity=0.025 Sum_probs=98.5
Q ss_pred ceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 110 GIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
.+|+.......+.|||..+++....-.... .. ...+.+.+.. .+ ++.. .....+.+|+
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~-----v~~~~~~~~~-~~-l~s~-----------s~d~~i~iwd 167 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHV----SE-----ITKLKFFPSG-EA-LISS-----------SQDMQLKIWS 167 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEEEEETTSSS----SC-----EEEEEECTTS-SE-EEEE-----------ETTSEEEEEE
T ss_pred CEEEEEECCCCEEEEeCCCcceeeeccccc----Cc-----cEEEEECCCC-CE-EEEE-----------eCCCeEEEEe
Confidence 355555567788999999888766432111 11 2456666543 32 2222 1245788998
Q ss_pred cCCCce-EeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE---
Q 048178 190 LSTNSW-RNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI--- 262 (376)
Q Consensus 190 s~t~~W-~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~--- 262 (376)
.+++.= +.+.... ....++.+ +|.....+.. ...|..+|+.+.+-.. +..+..... ....+..
T Consensus 168 ~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 237 (420)
T 3vl1_A 168 VKDGSNPRTLIGHR----ATVTDIAIIDRGRNVLSASL-----DGTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVG 237 (420)
T ss_dssp TTTCCCCEEEECCS----SCEEEEEEETTTTEEEEEET-----TSCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEEEC
T ss_pred CCCCcCceEEcCCC----CcEEEEEEcCCCCEEEEEcC-----CCcEEEeECCCCceeEEeecCCCCCC-CccEEEEecC
Confidence 877531 1111110 01112222 4544433332 2368889988765433 333221111 0011111
Q ss_pred -------------------ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC-CCCceeeeEEEeeCCc-EEEE-EcCC
Q 048178 263 -------------------YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG-PFIGIFQPLLFWKKGA-FFVE-SNSS 320 (376)
Q Consensus 263 -------------------~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~-~~~~~~~~~~~~~~g~-i~~~-~~~~ 320 (376)
-+|++.++... +..+.+|.+...+ ....+. .......-+++.++|. +++. ..++
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHV--SGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEET--TSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcC--CCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence 24555555544 6789999987732 333331 1222244456666776 5554 5678
Q ss_pred eEEEEeCCCCc--EEEEEE
Q 048178 321 QLLLYEPGTGE--LRDFEL 337 (376)
Q Consensus 321 ~~~~yd~~t~~--~~~v~~ 337 (376)
.+..||+++++ +..+..
T Consensus 314 ~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp EEEEEETTCTTSCSEEEEE
T ss_pred eEEEEEcCCCcCchhhhhc
Confidence 89999999864 455544
No 89
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=80.35 E-value=24 Score=31.70 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=40.3
Q ss_pred EEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEE--cCCeEEEEeCCCCcEEEE
Q 048178 280 KIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVES--NSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 280 ~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~--~~~~~~~yd~~t~~~~~v 335 (376)
+||+.+-.....+.+| +......-+++..+|+ +++.. ..+.+.+||.+|++..+.
T Consensus 299 ~V~VID~~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEEEECCCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 6888887778888888 6654444567777888 55553 367899999999876643
No 90
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=80.21 E-value=27 Score=29.91 Aligned_cols=189 Identities=14% Similarity=0.076 Sum_probs=98.2
Q ss_pred cceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+.+++.. ....+.++|+.|++....-.... . ...+.+++..+ + ++... .....+.+
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----~-----~~~~~~s~dg~-~-l~~~~----------~~~~~i~~ 66 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY-----D-----FVDTAITSDCS-N-VVVTS----------DFCQTLVQ 66 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-----C-----EEEEEECSSSC-E-EEEEE----------STTCEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccC-----C-----cceEEEcCCCC-E-EEEEe----------CCCCeEEE
Confidence 44444443 35678999999998755322211 1 12566665443 2 22221 12348888
Q ss_pred EEcCCCce--EeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 188 YNLSTNSW--RNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 188 yss~t~~W--~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
++..++.- +.+... .....++. -+|..-+...... ....|..+|+++.+... ++.+... ..++.
T Consensus 67 ~d~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~-----~~~~~ 135 (331)
T 3u4y_A 67 IETQLEPPKVVAIQEG----QSSMADVDITPDDQFAVTVTGLN--HPFNMQSYSFLKNKFISTIPIPYDA-----VGIAI 135 (331)
T ss_dssp EECSSSSCEEEEEEEC----SSCCCCEEECTTSSEEEECCCSS--SSCEEEEEETTTTEEEEEEECCTTE-----EEEEE
T ss_pred EECCCCceeEEecccC----CCCccceEECCCCCEEEEecCCC--CcccEEEEECCCCCeEEEEECCCCc-----cceEE
Confidence 99888754 222111 01112132 3455333332210 02279999998876533 3332211 23333
Q ss_pred e-cCe-EEEEEecCCCCEEEEEEeCC-Cceee--EEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEEEeCCCCcE
Q 048178 263 Y-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIK--QSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLLYEPGTGEL 332 (376)
Q Consensus 263 ~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~--~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~yd~~t~~~ 332 (376)
. +|+ |++.... ....+.+|.++. +.-.. ...+ +......-+++.++|+ +++.. .++.+..||+++++.
T Consensus 136 spdg~~l~~~~~~-~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 136 SPNGNGLILIDRS-SANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp CTTSSCEEEEEET-TTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCCCEEEEEecC-CCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 3 565 6666553 233499999987 32221 1223 2222234456677887 66655 467899999998874
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=79.38 E-value=29 Score=29.75 Aligned_cols=189 Identities=8% Similarity=-0.025 Sum_probs=96.9
Q ss_pred eEEEeecCCeEEEEec-CccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 111 IVFIEGLNNRITLWNI-ATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP-~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
+++.......+.+||. .+++...+..... ... ...+.+.+ +.+-+.+- ....+.+|+
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~~~-----v~~l~~~~--~~~l~s~~------------~d~~i~iwd 128 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEA---NLG-----ICRICKYG--DDKLIAAS------------WDGLIEVID 128 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCC---CSC-----EEEEEEET--TTEEEEEE------------TTSEEEEEC
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCC---CCc-----eEEEEeCC--CCEEEEEc------------CCCeEEEEc
Confidence 4555566778999999 8888766644200 111 23566666 33322221 245677777
Q ss_pred cCCC---c----eEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCC-ce--EeeecCCCCCCCCCcee
Q 048178 190 LSTN---S----WRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAE-EK--FQEIQGPCTLESSLDVT 259 (376)
Q Consensus 190 s~t~---~----W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~-e~--~~~i~lP~~~~~~~~~~ 259 (376)
.++. . .+.+.... ......++.+++.....+ .. ...|..+|+.+ .. ......+.... -..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~-~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~---i~~ 198 (342)
T 1yfq_A 129 PRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSRLIVG-MN----NSQVQWFRLPLCEDDNGTIEESGLKYQ---IRD 198 (342)
T ss_dssp HHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSEEEEE-ES----TTEEEEEESSCCTTCCCEEEECSCSSC---EEE
T ss_pred ccccccccccccCCeeeEEe--eCCceEEEEecCCcEEEE-eC----CCeEEEEECCccccccceeeecCCCCc---eeE
Confidence 6640 0 22222111 111112344433332222 22 33788999887 32 33333222211 133
Q ss_pred EEEe--cCeEEEEEecCCCCEEEEEEeCCC--c--eeeEEEECCCCc---------eeeeEEEeeCCcEEE-EEcCCeEE
Q 048178 260 LGIY--DQSLSLLLLDTVDHCFKIWVMQKK--N--WIKQSSVGPFIG---------IFQPLLFWKKGAFFV-ESNSSQLL 323 (376)
Q Consensus 260 l~~~--~g~L~l~~~~~~~~~l~vW~l~~~--~--W~~~~~i~~~~~---------~~~~~~~~~~g~i~~-~~~~~~~~ 323 (376)
+... +|.+.++... +..+.||.++.. . ...+..+..... ...-+++.++|.+++ ...++.+.
T Consensus 199 i~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 199 VALLPKEQEGYACSSI--DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp EEECSGGGCEEEEEET--TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EEECCCCCCEEEEEec--CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence 4444 4666666654 789999998753 1 223333311111 133355566777554 45677899
Q ss_pred EEeCCCCcEE
Q 048178 324 LYEPGTGELR 333 (376)
Q Consensus 324 ~yd~~t~~~~ 333 (376)
+||+++++..
T Consensus 277 vwd~~~~~~~ 286 (342)
T 1yfq_A 277 CWNLQTRKKI 286 (342)
T ss_dssp EEETTTTEEE
T ss_pred EEcCccHhHh
Confidence 9999988643
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=79.09 E-value=28 Score=29.33 Aligned_cols=96 Identities=11% Similarity=0.203 Sum_probs=56.9
Q ss_pred ccEEEEEECCCceEe-eecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEE
Q 048178 230 NYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLF 307 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (376)
...|..+|+.+.+.. .+..... .-..+... +|.| +.... +..+.+|.++..+-...... +.. -..-+++
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~l-~~~~~--dg~v~iwd~~~~~~~~~~~~-~~~-~i~~~~~ 274 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHES----FVYCIKLLPNGDI-VSCGE--DRTVRIWSKENGSLKQVITL-PAI-SIWSVDC 274 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSCE-EEEET--TSEEEEECTTTCCEEEEEEC-SSS-CEEEEEE
T ss_pred CCeEEEEECCchhhhhhhhcCCc----eEEEEEEecCCCE-EEEec--CCEEEEEECCCCceeEEEec-cCc-eEEEEEE
Confidence 347999999865432 2332111 11233333 4433 23333 78999999887544444433 222 2334566
Q ss_pred eeCCcEEEEEcCCeEEEEeCCCCcEEE
Q 048178 308 WKKGAFFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 308 ~~~g~i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
..+|.++....++.+..||++++++..
T Consensus 275 ~~~~~~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 275 MSNGDIIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp CTTSCEEEEETTSCEEEEESCGGGCCC
T ss_pred ccCCCEEEEeCCCcEEEEeCCCCceee
Confidence 678887777788889999999886543
No 93
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=78.32 E-value=19 Score=35.62 Aligned_cols=139 Identities=11% Similarity=0.016 Sum_probs=69.3
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
...+.++++.+..-+.+... .+ ....++.+ +|.|||..... ...|..+|+.......+... ... ...
T Consensus 474 ~~~I~v~d~dg~~~~~l~~~--~~-~~P~giavDp~~g~ly~td~~~----~~~I~~~~~dG~~~~~l~~~-~l~--~Pn 543 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTLFRE--QG-SKPRAIVVDPVHGFMYWTDWGT----PAKIKKGGLNGVDIYSLVTE-NIQ--WPN 543 (699)
T ss_dssp TSCEEEEBSSSCCEEEECCC--SS-CCCCCEECCSSSSCCEECCCSS----SCCEEBCCSSSCCCCEESCS-SCS--SCC
T ss_pred CCeEEEEecCCCceEEEEeC--CC-CCcceEEEccCCCcEEEcccCC----CCeEEEEeCCCCCeeEEEeC-CCC--Ccc
Confidence 44677777766543333211 11 11234444 68899976432 24688888765433332110 111 112
Q ss_pred eEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEEE-cCCeEEEEeCCCCcEEE
Q 048178 259 TLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 259 ~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~-~~~~~~~yd~~t~~~~~ 334 (376)
.|+.- ++.||++... ...|.+..++... .+. .+.....+..|.++.- .+.+|+.. ..+.|..+|+.+++..+
T Consensus 544 Glavd~~~~~LY~aD~~--~~~I~~~d~dG~~-~~~-~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSK--LHSISSIDVNGGN-RKT-ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CEEECTTTCCEEEEETT--TTEEEEECSSSSC-CEE-ECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEeccCCEEEEEecC--CCeEEEEccCCCc-eEE-EEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 35543 4668887764 5666666555421 111 1101112344555543 34466654 35679999987765443
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=77.63 E-value=31 Score=29.04 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=94.7
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+.+++++.......+.|||..+++....-.... . . ...+.+.+. +.+-+..- ....+.
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~---~-~-----v~~~~~~~~-~~~l~~~~------------~dg~i~ 84 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ---G-F-----LNSVCYDSE-KELLLFGG------------KDTMIN 84 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEEEEEEECS---S-C-----EEEEEEETT-TTEEEEEE------------TTSCEE
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC---c-c-----EEEEEECCC-CCEEEEec------------CCCeEE
Confidence 445666666677888999998776544222110 0 1 235556653 23222221 134566
Q ss_pred EEEcCCC-ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--
Q 048178 187 VYNLSTN-SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-- 263 (376)
Q Consensus 187 vyss~t~-~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-- 263 (376)
+++..+. ..+.+..... .......+..+|.....+.. ...|..+|. .+....+..... ....+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~-----d~~i~~~d~-~~~~~~~~~~~~----~v~~~~~~~~ 153 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIG-HQGNVCSLSFQDGVVISGSW-----DKTAKVWKE-GSLVYNLQAHNA----SVWDAKVVSF 153 (313)
T ss_dssp EEETTCCTTSCC-CEECC-CSSCEEEEEEETTEEEEEET-----TSEEEEEET-TEEEEEEECCSS----CEEEEEEEET
T ss_pred EEEeeecCCCCcccchhh-cccCEEEEEecCCEEEEEeC-----CCCEEEEcC-CcEEEecccCCC----ceeEEEEccC
Confidence 6665543 1222211110 00112345556665544443 337888882 222222222111 11223322
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC-CCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG-PFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
++...++... +..+.+|.... ....+. .......-+++.+++.++....++.+..||+++++..
T Consensus 154 ~~~~l~~~~~--d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 154 SENKFLTASA--DKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp TTTEEEEEET--TSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCEEEEEEC--CCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh
Confidence 5666665554 67899997332 222221 1222345566677888666677889999999987644
No 95
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=77.62 E-value=36 Score=29.75 Aligned_cols=144 Identities=8% Similarity=0.111 Sum_probs=76.2
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~ 258 (376)
...+.+++..++.|...............++.+ +|.+...+.. ...+..+|..+..+..+ .+..... .-.
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-----D~~v~iw~~~~~~~~~~~~~~~h~~--~v~ 109 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-----DATTCIWKKNQDDFECVTTLEGHEN--EVK 109 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECCC-EEEEEEECCCSS--CEE
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC-----CCcEEEEEccCCCeEEEEEccCCCC--Cce
Confidence 457888888888775332111101111112322 3443333322 23567778777665443 2322111 112
Q ss_pred eEEEe-cCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 259 TLGIY-DQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 259 ~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
.+... +|++.+.+.. +..+.||.++. ..+..+..+.....-..-+++.+++.+++. ..++.+..||.+++++..
T Consensus 110 ~v~~sp~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 110 SVAWAPSGNLLATCSR--DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp EEEECTTSSEEEEEET--TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEeCCCCEEEEEEC--CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 23333 5565555554 78899999987 556666655322222344566667775554 567778899988876543
No 96
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=77.62 E-value=39 Score=30.25 Aligned_cols=188 Identities=11% Similarity=0.019 Sum_probs=93.4
Q ss_pred ceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 110 GIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 110 Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
..+++.. ....+.+||+.+++....-+... . ...+.+++..+ +-++.-. ..... ......+.+|
T Consensus 224 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~------~~~~~~~~~g~-~l~~~~~--~~~~~--~~~dg~i~~~ 288 (433)
T 3bws_A 224 DLVYCSNWISEDISVIDRKTKLEIRKTDKIG----L------PRGLLLSKDGK-ELYIAQF--SASNQ--ESGGGRLGIY 288 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEECCCCS----E------EEEEEECTTSS-EEEEEEE--ESCTT--CSCCEEEEEE
T ss_pred CEEEEEecCCCcEEEEECCCCcEEEEecCCC----C------ceEEEEcCCCC-EEEEEEC--CCCcc--ccCCCeEEEE
Confidence 3444444 46788999998887654322211 0 23566665433 3222221 11110 0124588899
Q ss_pred EcCCCceEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEe-
Q 048178 189 NLSTNSWRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 189 ss~t~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~- 263 (376)
+.+++.-......+ .....+.+ +|. +|.... . ...|..+|+.+.+... ++.... ...++..
T Consensus 289 d~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~~~-~----~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~ 354 (433)
T 3bws_A 289 SMDKEKLIDTIGPP----GNKRHIVSGNTENKIYVSDM-C----CSKIEVYDLKEKKVQKSIPVFDK-----PNTIALSP 354 (433)
T ss_dssp ETTTTEEEEEEEEE----ECEEEEEECSSTTEEEEEET-T----TTEEEEEETTTTEEEEEEECSSS-----EEEEEECT
T ss_pred ECCCCcEEeeccCC----CCcceEEECCCCCEEEEEec-C----CCEEEEEECCCCcEEEEecCCCC-----CCeEEEcC
Confidence 98887432221110 01112222 454 444333 2 3479999998765432 332111 1234433
Q ss_pred cCe-EEEEEecCC------------CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EE-cCCeEEEEeCC
Q 048178 264 DQS-LSLLLLDTV------------DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ES-NSSQLLLYEPG 328 (376)
Q Consensus 264 ~g~-L~l~~~~~~------------~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~-~~~~~~~yd~~ 328 (376)
+|+ |++...... +..+.+|.++..+ .+..+ +......-+++..+|+.++ .. .++.+..|+++
T Consensus 355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~--~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT--VKEFW-EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE--EEEEE-ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCCEEEEEecCCCccccccccccccceEEEEEECCCCc--EEEEe-cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 455 444443211 2488999887643 33344 2222234456667787554 44 37889999876
Q ss_pred C
Q 048178 329 T 329 (376)
Q Consensus 329 t 329 (376)
+
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=77.39 E-value=35 Score=29.60 Aligned_cols=197 Identities=9% Similarity=0.105 Sum_probs=95.6
Q ss_pred ceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCC-CCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 110 GIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKT-KDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
.+|+....+..+.|||..++++..+-..... ... ...+.+.+.. +.+ ++... ....+.+|
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~-----v~~~~~~~~~~~~~-l~~~~-----------~d~~i~v~ 130 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRWSQIAVHAVH--SAS-----VNSVQWAPHEYGPL-LLVAS-----------SDGKVSVV 130 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCC--SSC-----EEEEEECCGGGCSE-EEEEE-----------TTSEEEEE
T ss_pred CEEEEeccCCEEEEEEcCCCceeEeeeecCC--Ccc-----eEEEEeCCCCCCCE-EEEec-----------CCCcEEEE
Confidence 3444445567889999998864433222111 011 2356666553 233 22221 24578888
Q ss_pred EcCCCce-EeccccCccccCCCCeEEE---------------CceEEEEeeecCCCCccEEEEEECCCc--eEeee-cCC
Q 048178 189 NLSTNSW-RNLKSIDYTMRLSSERTYF---------------DGAFYWLLKLENDNDNYVILSFHMAEE--KFQEI-QGP 249 (376)
Q Consensus 189 ss~t~~W-~~~~~~~~~~~~~~~~v~~---------------~G~lywl~~~~~~~~~~~i~~fD~~~e--~~~~i-~lP 249 (376)
+.+++.- .... ... .......+.+ +|.+...+.. ...|..+|+.+. .+..+ .+.
T Consensus 131 d~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 131 EFKENGTTSPII-IDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----DNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp ECCTTSCCCEEE-EEC-CTTCEEEEEECCCC----------CTTCEEEEEET-----TSCEEEEEEETTTTEEEEEEEEC
T ss_pred ecCCCCceeeEE-ecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeC-----CCeEEEEEecCCCcceeeEEEEe
Confidence 8877622 1111 000 0000011211 3454444433 235777777543 34333 222
Q ss_pred CCCCCCCceeEEEe-c---CeEEEEEecCCCCEEEEEEeCCCcee-eEEEECC--CCceeeeEEEeeCCcEEE-EEcCCe
Q 048178 250 CTLESSLDVTLGIY-D---QSLSLLLLDTVDHCFKIWVMQKKNWI-KQSSVGP--FIGIFQPLLFWKKGAFFV-ESNSSQ 321 (376)
Q Consensus 250 ~~~~~~~~~~l~~~-~---g~L~l~~~~~~~~~l~vW~l~~~~W~-~~~~i~~--~~~~~~~~~~~~~g~i~~-~~~~~~ 321 (376)
.... .-..+... + |.+.+.... +..+.||.++..... ....+.. ......-+++.++|..++ ...++.
T Consensus 204 ~h~~--~v~~~~~sp~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 204 GHSD--WVRDVAWSPTVLLRSYLASVSQ--DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp CCSS--CEEEEEECCCCSSSEEEEEEET--TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred cccC--cEeEEEECCCCCCCCeEEEEeC--CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 2111 11233333 3 555555554 678999999883222 2222211 111233456667777554 566788
Q ss_pred EEEEeCCC-CcEEEEE
Q 048178 322 LLLYEPGT-GELRDFE 336 (376)
Q Consensus 322 ~~~yd~~t-~~~~~v~ 336 (376)
+.+||+++ ++++.+.
T Consensus 280 i~iw~~~~~~~~~~~~ 295 (379)
T 3jrp_A 280 VTLWKENLEGKWEPAG 295 (379)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCCcccccc
Confidence 99999884 4666553
No 98
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=77.36 E-value=33 Score=29.30 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=65.8
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~ 258 (376)
...+.+|+.+++.-...-... .....++.+ +|.+...+.. ...|..+|+.+..-.. +.... ...
T Consensus 194 d~~i~i~d~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~-----Dg~i~iwd~~~~~~~~~~~~~~-----~v~ 260 (340)
T 4aow_A 194 DKLVKVWNLANCKLKTNHIGH---TGYLNTVTVSPDGSLCASGGK-----DGQAMLWDLNEGKHLYTLDGGD-----IIN 260 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEET-----TCEEEEEETTTTEEEEEEECSS-----CEE
T ss_pred CCEEEEEECCCCceeeEecCC---CCcEEEEEECCCCCEEEEEeC-----CCeEEEEEeccCceeeeecCCc-----eEE
Confidence 346778888776432211000 001112322 3544433332 3378889988765422 22211 112
Q ss_pred eEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC---------CCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCC
Q 048178 259 TLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG---------PFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPG 328 (376)
Q Consensus 259 ~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~---------~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~ 328 (376)
.+....+...++... +..+.||.++...- +..+. .......-+++.++|..++. ..++.+.+||++
T Consensus 261 ~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 261 ALCFSPNRYWLCAAT--GPSIKIWDLEGKII--VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEECSSSSEEEEEE--TTEEEEEETTTTEE--EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eeecCCCCceeeccC--CCEEEEEECCCCeE--EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 333334443444443 67899998876221 11110 01111333566778887765 567889999998
Q ss_pred CCc
Q 048178 329 TGE 331 (376)
Q Consensus 329 t~~ 331 (376)
|++
T Consensus 337 tGt 339 (340)
T 4aow_A 337 IGT 339 (340)
T ss_dssp C--
T ss_pred CcC
Confidence 874
No 99
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=77.08 E-value=35 Score=29.43 Aligned_cols=191 Identities=9% Similarity=0.042 Sum_probs=93.1
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+++.......+.|||..+++....-.. .... ...+.+.+..+.+-+.+- ....+.+|+.
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~-----i~~~~~~~~~~~~l~s~~------------~dg~i~iwd~ 145 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHYVG----HGNA-----INELKFHPRDPNLLLSVS------------KDHALRLWNI 145 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEEES----CCSC-----EEEEEECSSCTTEEEEEE------------TTSCEEEEET
T ss_pred EEEEecCCCEEEEEEchhceEeeeecC----CCCc-----EEEEEECCCCCCEEEEEe------------CCCeEEEEEe
Confidence 455555677899999998875442111 0111 245666664444333221 2457889998
Q ss_pred CCCceEe-ccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ec-------------------
Q 048178 191 STNSWRN-LKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQ------------------- 247 (376)
Q Consensus 191 ~t~~W~~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~------------------- 247 (376)
+++.-.. +..... .......+.+ +|.....+.. ...|..+|+.+.+... +.
T Consensus 146 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 146 QTDTLVAIFGGVEG-HRDEVLSADYDLLGEKIMSCGM-----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTTEEEEEECSTTS-CSSCEEEEEECTTSSEEEEEET-----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ecCeEEEEeccccc-ccCceeEEEECCCCCEEEEecC-----CCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 8774322 210000 0011112322 3443333322 2368888988653211 00
Q ss_pred -CCCCC---CCCCc-eeEEEecCeEEEEEecCCCCEEEEEEeCC-C-----------ceeeEEEECCCCceeeeEEEeeC
Q 048178 248 -GPCTL---ESSLD-VTLGIYDQSLSLLLLDTVDHCFKIWVMQK-K-----------NWIKQSSVGPFIGIFQPLLFWKK 310 (376)
Q Consensus 248 -lP~~~---~~~~~-~~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~-----------~W~~~~~i~~~~~~~~~~~~~~~ 310 (376)
.|... ..... ..+.. .|.+.+.... +..+.+|.+.. . ....+..+.....-..-+++..+
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRW-LGDLILSKSC--ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD 296 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEE-ETTEEEEECS--SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred ccCccccccCCcceEEEEEE-cCCEEEEEec--CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence 00000 00011 22332 3665555444 78999999876 1 12223333111111222444556
Q ss_pred --CcEEEE-EcCCeEEEEeCCCCc
Q 048178 311 --GAFFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 311 --g~i~~~-~~~~~~~~yd~~t~~ 331 (376)
|.+++. ..++.+..||+++++
T Consensus 297 ~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 297 FWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCcEEEEEecCCcEEEEECCCCC
Confidence 776665 456789999999864
No 100
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=76.79 E-value=37 Score=29.52 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=55.0
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK 309 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (376)
..|..+|+++.+....- ..... .-..+... +|.+.+.+.. +..+.+|.+... ..+..+.....-..-+++.+
T Consensus 164 ~~i~~wd~~~~~~~~~~-~~h~~--~v~~~~~~~~~~~l~sg~~--d~~v~~wd~~~~--~~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 164 TTCALWDIETGQQTTTF-TGHTG--DVMSLSLAPDTRLFVSGAC--DASAKLWDVREG--MCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp SCEEEEETTTTEEEEEE-CCCSS--CEEEEEECTTSSEEEEEET--TSCEEEEETTTC--SEEEEECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCcEEEEE-cCCCC--ceEEEEECCCCCEEEEEeC--CCcEEEEECCCC--eeEEEEcCCcCCEEEEEEcC
Confidence 36888999876543321 11110 11233333 4556555554 789999998763 23344422222244466677
Q ss_pred CCcEEEE-EcCCeEEEEeCCCCcE
Q 048178 310 KGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 310 ~g~i~~~-~~~~~~~~yd~~t~~~ 332 (376)
+|..++. ..++.+..||+++++.
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcE
Confidence 7876655 5677899999988753
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=76.59 E-value=52 Score=32.64 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=60.0
Q ss_pred cEEEEEECCCceEeee-cCCCCCCCCCceeEEEe-c--CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEE
Q 048178 231 YVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY-D--QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLL 306 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~-~--g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~ 306 (376)
..|..+|+.+++...+ .+...... -..+... + |.+.+.+.. +..+.||.++.+.|.....+.....-..-+.
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~--V~~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~ 106 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVHAVHSASVNSVQ 106 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSC--EEEEEECCTTSCSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CcEEEEecCCCCCccceeccCCcCc--eEEEEecCCCCCCEEEEEeC--CCeEEEEECCCCcccccccccCCCCCeEEEE
Confidence 3688888876666554 23221111 1233332 2 555555554 7889999999988888877732332244455
Q ss_pred EeeC--CcEEE-EEcCCeEEEEeCCCC
Q 048178 307 FWKK--GAFFV-ESNSSQLLLYEPGTG 330 (376)
Q Consensus 307 ~~~~--g~i~~-~~~~~~~~~yd~~t~ 330 (376)
+.++ |.+++ ...++.+.+||++++
T Consensus 107 ~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 107 WAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp ECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred ECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 5666 76555 466788999999887
No 102
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=75.89 E-value=55 Score=31.04 Aligned_cols=201 Identities=6% Similarity=-0.051 Sum_probs=102.4
Q ss_pred cc-eEEEeec-CCeEEEEecCccceee-cCCCCCCCCC-ccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 109 CG-IVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQ-YTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 109 ~G-ll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~-~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+| ++...+. ...+.|+|..|++.+. ++........ .+.......++.+.+.. .+.++.. ...-.
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~-~~~~vs~-----------~~~g~ 303 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH-PEFIVNV-----------KETGK 303 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS-SEEEEEE-----------TTTTE
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC-CEEEEEE-----------CCCCe
Confidence 44 5555543 6788999998887543 3322110000 00000002334444333 3333332 12446
Q ss_pred EEEEEcCCCce-E--eccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCce
Q 048178 185 VTVYNLSTNSW-R--NLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDV 258 (376)
Q Consensus 185 ~~vyss~t~~W-~--~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~ 258 (376)
+.+++.++..- + .++. ......+.+ +|...+.+... ...|.++|.++.+... ++...........
T Consensus 304 i~vvd~~~~~~l~~~~i~~-----~~~~~~~~~spdg~~l~va~~~----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 304 VLLVNYKDIDNLTVTSIGA-----APFLHDGGWDSSHRYFMTAANN----SNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp EEEEECTTSSSCEEEEEEC-----CSSCCCEEECTTSCEEEEEEGG----GTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred EEEEEecCCCcceeEEecc-----CcCccCceECCCCCEEEEEecC----CCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 77777766421 1 1110 000112222 57655555443 3478889999887643 3432111110112
Q ss_pred eEEEec-CeEEEEEecCCCCEEEEEEeCC-----CceeeEEEECCCCc-eeeeEEEeeCCcEEEEEc--------CCeEE
Q 048178 259 TLGIYD-QSLSLLLLDTVDHCFKIWVMQK-----KNWIKQSSVGPFIG-IFQPLLFWKKGAFFVESN--------SSQLL 323 (376)
Q Consensus 259 ~l~~~~-g~L~l~~~~~~~~~l~vW~l~~-----~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~--------~~~~~ 323 (376)
.+..-+ |.+++... ....++.||..+. ..|..+.++ +... -...+.+.++|..+.... ...+.
T Consensus 375 ~~~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l-~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 375 NFVHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAEL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEE-ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred ccCCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeEEEEE-EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 232224 44554443 3468999999986 239999988 5432 234466777888655532 44799
Q ss_pred EEeCCCCcE
Q 048178 324 LYEPGTGEL 332 (376)
Q Consensus 324 ~yd~~t~~~ 332 (376)
+||.++.+.
T Consensus 453 v~d~~~~~~ 461 (543)
T 1nir_A 453 VFDLKNLDA 461 (543)
T ss_dssp EEETTCTTS
T ss_pred EEECCCCCC
Confidence 999998764
No 103
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=75.46 E-value=46 Score=29.93 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=97.9
Q ss_pred eecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
..+|.|...+. ...++.+++.++....+-...... ..++.+|+..+. |... . .....+
T Consensus 125 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~---------p~glavd~~~g~--lY~~------d----~~~~~I 183 (386)
T 3v65_B 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES---------PGGLAVDWVHDK--LYWT------D----SGTSRI 183 (386)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC---------CCCEEEETTTTE--EEEE------E----TTTTEE
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC---------ccEEEEEeCCCe--EEEE------c----CCCCeE
Confidence 34677766654 456777888766544432211110 135666765443 1111 1 124467
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
++++..+..-+.+... .+ ....++.+ +|.+||..... ...|..+|+....-..+-- .... ....|+.
T Consensus 184 ~~~~~dg~~~~~l~~~--~l-~~P~giavdp~~g~ly~td~~~----~~~I~r~~~dG~~~~~~~~-~~~~--~PnGlav 253 (386)
T 3v65_B 184 EVANLDGAHRKVLLWQ--SL-EKPRAIALHPMEGTIYWTDWGN----TPRIEASSMDGSGRRIIAD-THLF--WPNGLTI 253 (386)
T ss_dssp EECBTTSCSCEEEECS--SC-SCEEEEEEETTTTEEEEEECSS----SCEEEEEETTSCSCEEEEC-SSCS--CEEEEEE
T ss_pred EEEeCCCCceEEeecC--CC-CCCcEEEEEcCCCeEEEeccCC----CCEEEEEeCCCCCcEEEEE-CCCC--CeeeEEE
Confidence 7777665433322111 11 11124444 58999976542 2589999987654333311 1111 1234555
Q ss_pred e--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEEE-cCCeEEEEeC-CCCcEEEEE
Q 048178 263 Y--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEP-GTGELRDFE 336 (376)
Q Consensus 263 ~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~-~~~~~~~yd~-~t~~~~~v~ 336 (376)
- ++.||++... ...|....++... .+ ..+ .. .+..|.++.- ++.+|+.. ..+.+..+|. ..+..+.+.
T Consensus 254 d~~~~~lY~aD~~--~~~I~~~d~dG~~-~~-~~~-~~-~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 254 DYAGRRMYWVDAK--HHVIERANLDGSH-RK-AVI-SQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EGGGTEEEEEETT--TTEEEEECTTSCS-CE-EEE-CS-SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCEEEEEECC--CCEEEEEeCCCCe-eE-EEE-EC-CCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 3 6778888764 4555555554311 11 112 11 1345655543 55677765 4577999994 444555554
No 104
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=75.01 E-value=36 Score=28.47 Aligned_cols=194 Identities=9% Similarity=0.019 Sum_probs=100.6
Q ss_pred eeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 106 GLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 106 ~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
-..+|-+.+... ...++++||. ++...+..+.. ... ..++.+|+.. . +... . .....
T Consensus 64 ~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---~~~-----~~~i~~~~~g-~--l~v~-~---------~~~~~ 121 (299)
T 2z2n_A 64 ISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNP---DSA-----PYGITEGPNG-D--IWFT-E---------MNGNR 121 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST---TCC-----EEEEEECTTS-C--EEEE-E---------TTTTE
T ss_pred ECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCc---CCC-----ceeeEECCCC-C--EEEE-e---------cCCce
Confidence 344666666654 5678899986 44443332110 001 2466677533 2 2111 1 11346
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
+.+|+. ++........ ... ....++.. +|.+|+... . ...|..+|. +.++..+.+|..... ...++.
T Consensus 122 i~~~d~-~g~~~~~~~~-~~~-~~~~~i~~~~~g~l~v~~~-~----~~~i~~~~~-~g~~~~~~~~~~~~~--~~~i~~ 190 (299)
T 2z2n_A 122 IGRITD-DGKIREYELP-NKG-SYPSFITLGSDNALWFTEN-Q----NNAIGRITE-SGDITEFKIPTPASG--PVGITK 190 (299)
T ss_dssp EEEECT-TCCEEEEECS-STT-CCEEEEEECTTSCEEEEET-T----TTEEEEECT-TCCEEEEECSSTTCC--EEEEEE
T ss_pred EEEECC-CCCEEEecCC-CCC-CCCceEEEcCCCCEEEEeC-C----CCEEEEEcC-CCcEEEeeCCCCCCc--ceeEEE
Confidence 667776 5544433211 001 11123433 577765443 2 347999999 777766655533221 123444
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCC-ceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCcEEEEEEe
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFI-GIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~-~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~~~~v~~~ 338 (376)
- +|.|++.... ...+.+|.. ++.... ..+ +.. ....-+++.++|.+++.. ..+.+..||+ +++++.+.+.
T Consensus 191 ~~~g~l~v~~~~--~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 263 (299)
T 2z2n_A 191 GNDDALWFVEII--GNKIGRITT-SGEITE-FKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQ 263 (299)
T ss_dssp CTTSSEEEEETT--TTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECS
T ss_pred CCCCCEEEEccC--CceEEEECC-CCcEEE-EEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCC
Confidence 3 5678776643 456666665 344332 223 211 112234445578888886 4578999999 4566666543
No 105
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=74.16 E-value=40 Score=28.69 Aligned_cols=187 Identities=15% Similarity=0.166 Sum_probs=92.3
Q ss_pred ceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 110 GIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
.+|+....+..+.|||..|++... +..- ... ...+.+.|.. .+ ++.. .....+.++
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-----~~~-----v~~~~~~~~~-~~-l~sg-----------s~D~~v~lW 124 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDY-----IRSIAVHPTK-PY-VLSG-----------SDDLTVKLW 124 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECC-----SSC-----EEEEEECSSS-SE-EEEE-----------ETTSCEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCC-----CCc-----EEEEEEcCCC-CE-EEEE-----------CCCCeEEEE
Confidence 345555567789999999887543 2211 111 2345555443 22 2221 124577888
Q ss_pred EcCCCceEeccccCccccCCCCeEEEC---ceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEe-
Q 048178 189 NLSTNSWRNLKSIDYTMRLSSERTYFD---GAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 189 ss~t~~W~~~~~~~~~~~~~~~~v~~~---G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~- 263 (376)
+.+++ +......... .....++.++ |.+...+ .. ...|..+|+.+..-.. +..... .......+
T Consensus 125 d~~~~-~~~~~~~~~h-~~~v~~v~~~p~~~~~l~sg-s~----D~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~ 193 (304)
T 2ynn_A 125 NWENN-WALEQTFEGH-EHFVMCVAFNPKDPSTFASG-CL----DRTVKVWSLGQSTPNFTLTTGQE----RGVNYVDYY 193 (304)
T ss_dssp EGGGT-TEEEEEECCC-CSCEEEEEECTTCTTEEEEE-ET----TSEEEEEETTCSSCSEEEECCCT----TCEEEEEEC
T ss_pred ECCCC-cchhhhhccc-CCcEEEEEECCCCCCEEEEE-eC----CCeEEEEECCCCCccceeccCCc----CcEEEEEEE
Confidence 87664 1111111000 0111233332 2333222 22 3378888886543211 111110 11111221
Q ss_pred ---cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 264 ---DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 264 ---~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
++.+.+.... +..+.||.++.. ..+.++........-+++.+++.+++. ..++.+..||.++.+..+
T Consensus 194 ~~~~~~~l~s~s~--D~~i~iWd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 194 PLPDKPYMITASD--DLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp CSTTCCEEEEEET--TSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred EcCCCCEEEEEcC--CCeEEEEeCCCC--ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 3444444444 789999998873 334444212222344566677776665 567889999999987654
No 106
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=73.99 E-value=41 Score=28.65 Aligned_cols=102 Identities=7% Similarity=0.017 Sum_probs=60.2
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQS 293 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~ 293 (376)
+|.+||.... ...|..+|.++.....+..|... ..++.. +|+|.+.. ...+.+|..+.+++..+.
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~~~~-----~~i~~~~dG~l~v~~----~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTMDAPV-----SSVALRQSGGYVATI----GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEECSSCE-----EEEEEBTTSSEEEEE----TTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeCCCce-----EEEEECCCCCEEEEE----CCeEEEEECCCCcEEEEE
Confidence 4789998754 34799999998877666655321 234433 56655443 345666666656666555
Q ss_pred EECCCCceeee--EEEeeCCcEEEEEc------------CCeEEEEeCCCC
Q 048178 294 SVGPFIGIFQP--LLFWKKGAFFVESN------------SSQLLLYEPGTG 330 (376)
Q Consensus 294 ~i~~~~~~~~~--~~~~~~g~i~~~~~------------~~~~~~yd~~t~ 330 (376)
..........+ +.+.++|.+++... .+.++.+|.+.+
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 54211112222 45556788888642 246888888643
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=73.12 E-value=48 Score=29.08 Aligned_cols=99 Identities=7% Similarity=-0.069 Sum_probs=51.5
Q ss_pred cEEEEEECCCceEeeecCCCCCC-CCCc-eeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEE
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLE-SSLD-VTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLF 307 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~-~~~~-~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (376)
..|..+|+.+..-.......... .... ...... .+...++... +..+.+|.+.. ...+..+........-+++
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~--~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY--GSTIAVYTVYS--GEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE--TTEEEEEETTT--CCEEEEECCCSSCEEEEEE
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec--CCEEEEEECcC--CcceeeeccCCCeEEEEEE
Confidence 36889998876543221111100 0011 111222 2233333333 57899999877 3344555222222444677
Q ss_pred eeCCcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 308 WKKGAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 308 ~~~g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
.++|.+++. ..++.+..||+++.+..
T Consensus 343 s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 343 QSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp ETTTTEEEEEETTSCEEEEEECC----
T ss_pred cCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 778886665 56788999999987643
No 108
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=72.76 E-value=42 Score=28.31 Aligned_cols=108 Identities=6% Similarity=-0.026 Sum_probs=63.4
Q ss_pred Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ecCeEEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 215 DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 215 ~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
+|. +||..... ..|..+|.++. ...+..|... ...++. -+|+|++.... ...+.+|..++++....
T Consensus 38 ~g~~l~~~~~~~-----~~i~~~~~~~~-~~~~~~~~~~----~~~l~~~~dg~l~v~~~~--~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 38 ARSAVIFSDVRQ-----NRTWAWSDDGQ-LSPEMHPSHH----QNGHCLNKQGHLIACSHG--LRRLERQREPGGEWESI 105 (296)
T ss_dssp GGTEEEEEEGGG-----TEEEEEETTSC-EEEEESSCSS----EEEEEECTTCCEEEEETT--TTEEEEECSTTCCEEEE
T ss_pred CCCEEEEEeCCC-----CEEEEEECCCC-eEEEECCCCC----cceeeECCCCcEEEEecC--CCeEEEEcCCCCcEEEE
Confidence 565 89987653 37999999988 6666554321 123444 36677655532 56777777755554443
Q ss_pred EEECCCCce--eeeEEEeeCCcEEEEEc------------------CCeEEEEeCCCCcEEEE
Q 048178 293 SSVGPFIGI--FQPLLFWKKGAFFVESN------------------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 293 ~~i~~~~~~--~~~~~~~~~g~i~~~~~------------------~~~~~~yd~~t~~~~~v 335 (376)
......... ..-+++.++|.+++... .+.++.||++ ++.+.+
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP 167 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence 221011101 12256667888888521 3478999988 555554
No 109
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=72.55 E-value=55 Score=29.55 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=92.3
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+.+||..+++...|..... . .....+.|.. . +++.... + .....+.+++.+++.-+.+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~-----~-----v~~~~~Spdg-~-~la~~s~---~-----~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQ-----P-----LMSPAWSPDG-S-KLAYVTF---E-----SGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESS-----C-----EEEEEECTTS-S-EEEEEEC---T-----TSSCEEEEEETTTCCEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCC-----c-----ceeeEEcCCC-C-EEEEEEe---c-----CCCcEEEEEECCCCcEEEe
Confidence 578999987766555432111 0 2345555433 2 2333211 1 1246899999999877655
Q ss_pred cccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-EEEEEec
Q 048178 199 KSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS-LSLLLLD 273 (376)
Q Consensus 199 ~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~ 273 (376)
..... ....+.+ +|. +.+....+. ...|..+|+++.+...+.-.. . ....+.-. +|+ |+.....
T Consensus 219 ~~~~~----~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~--~--~~~~~~~spdg~~l~~~s~~ 287 (415)
T 2hqs_A 219 ASFPR----HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGR--S--NNTEPTWFPDSQNLAFTSDQ 287 (415)
T ss_dssp ECCSS----CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEECCCCS--S--CEEEEEECTTSSEEEEEECT
T ss_pred ecCCC----cccCEEEcCCCCEEEEEEecCC---CceEEEEECCCCCEEeCcCCC--C--cccceEECCCCCEEEEEECC
Confidence 43221 1112222 565 444433221 346899999887665442111 1 11222222 666 4444433
Q ss_pred CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEEc---CCeEEEEeCCCCcEEEEE
Q 048178 274 TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESN---SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 274 ~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~---~~~~~~yd~~t~~~~~v~ 336 (376)
.....+.+|.++.++ ...+........-+.+..+|+.+ +... ...+..+|+++++.+.+.
T Consensus 288 ~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 288 AGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS 351 (415)
T ss_dssp TSSCEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred CCCcEEEEEECCCCC---EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec
Confidence 223345555554432 12221111122334556788744 4433 247999999999887653
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=72.25 E-value=57 Score=29.60 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=41.7
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcE-EEEE
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGEL-RDFE 336 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~-~~v~ 336 (376)
|++.+.... +..+.||.+....-...... .......-+++. +|..++. ..++.+.+||+++++. ..+.
T Consensus 210 ~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 210 HQFIITSDR--DEHIKISHYPQCFIVDKWLF-GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp CEEEEEEET--TSCEEEEEESCTTCEEEECC-CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred CcEEEEEcC--CCcEEEEECCCCceeeeeec-CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 555555544 68899999987433322211 122223445666 7776654 5678899999998864 3444
No 111
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=71.89 E-value=58 Score=29.50 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=95.6
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+.+|+++....+..+.|||..+++....-... ... ...+.+.+..+.-.++... ....+.
T Consensus 171 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h----~~~-----v~~l~~~~~~~~~~l~s~s-----------~d~~i~ 230 (464)
T 3v7d_B 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH----NST-----VRCLDIVEYKNIKYIVTGS-----------RDNTLH 230 (464)
T ss_dssp CSTTEEEEEETTSCEEEEETTTTEEEEEECCC----SSC-----EEEEEEEESSSCEEEEEEE-----------TTSCEE
T ss_pred cCCCEEEEEeCCCCEEEEECCCCcEEEEECCC----CCc-----cEEEEEecCCCCCEEEEEc-----------CCCcEE
Confidence 45677776777888999999988755422111 111 1234444333332333321 134677
Q ss_pred EEEcCCCceEecccc----------Cc-------ccc---CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee
Q 048178 187 VYNLSTNSWRNLKSI----------DY-------TMR---LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI 246 (376)
Q Consensus 187 vyss~t~~W~~~~~~----------~~-------~~~---~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i 246 (376)
+++..++.-...... +. ... .....+..+|.....+.. ...|..+|+.+.+....
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~ 305 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY-----DNTLIVWDVAQMKCLYI 305 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET-----TSCEEEEETTTTEEEEE
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcEEEE
Confidence 777766532110000 00 000 011133444554444433 33688999987654332
Q ss_pred cCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEEcCCeEEE
Q 048178 247 QGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESNSSQLLL 324 (376)
Q Consensus 247 ~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~~~~~~~ 324 (376)
-.... . .-..+... +|...+.+.. +..+.+|.++.+ ..+..+........-+.+ ++..+ ....++.+..
T Consensus 306 ~~~~~--~-~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg~v~v 376 (464)
T 3v7d_B 306 LSGHT--D-RIYSTIYDHERKRCISASM--DTTIRIWDLENG--ELMYTLQGHTALVGLLRL--SDKFLVSAAADGSIRG 376 (464)
T ss_dssp ECCCS--S-CEEEEEEETTTTEEEEEET--TSCEEEEETTTT--EEEEEECCCSSCEEEEEE--CSSEEEEEETTSEEEE
T ss_pred ecCCC--C-CEEEEEEcCCCCEEEEEeC--CCcEEEEECCCC--cEEEEEeCCCCcEEEEEE--cCCEEEEEeCCCcEEE
Confidence 11111 0 11233333 5555555554 678999998873 344444222211222332 35544 4467788999
Q ss_pred EeCCCCcEE
Q 048178 325 YEPGTGELR 333 (376)
Q Consensus 325 yd~~t~~~~ 333 (376)
||+++.+..
T Consensus 377 wd~~~~~~~ 385 (464)
T 3v7d_B 377 WDANDYSRK 385 (464)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcee
Confidence 999987643
No 112
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=71.22 E-value=59 Score=29.34 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=61.2
Q ss_pred eEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCce
Q 048178 211 RTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNW 289 (376)
Q Consensus 211 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W 289 (376)
++..+|.....+.. ...|..+|+.+.+... +.... ....-...+|.+.++... +..+.+|.++..
T Consensus 284 ~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~~~~~--dg~i~vwd~~~~-- 349 (445)
T 2ovr_B 284 SLQFDGIHVVSGSL-----DTSIRVWDVETGNCIHTLTGHQ-----SLTSGMELKDNILVSGNA--DSTVKIWDIKTG-- 349 (445)
T ss_dssp EEEECSSEEEEEET-----TSCEEEEETTTCCEEEEECCCC-----SCEEEEEEETTEEEEEET--TSCEEEEETTTC--
T ss_pred EEEECCCEEEEEeC-----CCeEEEEECCCCCEEEEEcCCc-----ccEEEEEEeCCEEEEEeC--CCeEEEEECCCC--
Confidence 45557766555543 2378999998765432 22111 112333446665555554 789999998773
Q ss_pred eeEEEECC-CCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEE
Q 048178 290 IKQSSVGP-FIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 290 ~~~~~i~~-~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~ 333 (376)
..+..+.. ......+.++.-++..++ ...++.+..||+++++..
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCcee
Confidence 23444421 111122233333566555 466888999999988654
No 113
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=71.11 E-value=48 Score=28.27 Aligned_cols=102 Identities=8% Similarity=0.065 Sum_probs=57.2
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-EEEEEecC---CCCEEEEEEeCCCceeeEEEECCC-Cceeee
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS-LSLLLLDT---VDHCFKIWVMQKKNWIKQSSVGPF-IGIFQP 304 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~---~~~~l~vW~l~~~~W~~~~~i~~~-~~~~~~ 304 (376)
..|..+|.++.++..+. .. . ....++.. +|+ |++..... ....+.+|.++.........+... .....-
T Consensus 169 ~~v~~~d~~~g~~~~~~-~~--~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg 243 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA-DL--D--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG 243 (305)
T ss_dssp EEEEEECSSSCCCEEEE-EE--S--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS
T ss_pred CeEEEEcCCCCcEEEEe-cC--C--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe
Confidence 47999999877766553 11 1 11234433 555 66655421 125677776665332222111011 111223
Q ss_pred EEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEEEe
Q 048178 305 LLFWKKGAFFVESNSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 305 ~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~~~ 338 (376)
+.+..+|.|++... +.+..||++++.+..+...
T Consensus 244 i~~d~~G~lwv~~~-~gv~~~~~~g~~~~~~~~~ 276 (305)
T 3dr2_A 244 FCVDRGGWLWSSSG-TGVCVFDSDGQLLGHIPTP 276 (305)
T ss_dssp EEECTTSCEEECCS-SEEEEECTTSCEEEEEECS
T ss_pred EEECCCCCEEEecC-CcEEEECCCCCEEEEEECC
Confidence 55566888888764 5699999998888887654
No 114
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=71.02 E-value=79 Score=30.71 Aligned_cols=95 Identities=12% Similarity=0.166 Sum_probs=58.2
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK 309 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (376)
..|..+|+.+.+....-. .... .-..+... +|++.+.+.. +..+.||.+...+ .+..+ .......-+++.+
T Consensus 541 ~~v~vwd~~~~~~~~~~~-~h~~--~v~~v~~spdg~~l~sg~~--Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~sp 612 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA-GHTG--YVSTVAVSPDGSLCASGGK--DGVVLLWDLAEGK--KLYSL-EANSVIHALCFSP 612 (694)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSS--CEEEEEECTTSSEEEEEET--TSBCEEEETTTTE--EEECC-BCSSCEEEEEECS
T ss_pred CeEEEEECCCCcEEEEEc-CCCC--CEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCc--eEEEe-cCCCcEEEEEEcC
Confidence 368889988765433211 1100 11233333 5666555554 7899999998732 33444 2232345567777
Q ss_pred CCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 310 KGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 310 ~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
++.++....++.+.+||+++++..
T Consensus 613 ~~~~l~~~~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 613 NRYWLCAATEHGIKIWDLESKSIV 636 (694)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEE
T ss_pred CCcEEEEEcCCCEEEEECCCCCCh
Confidence 888887777778999999998654
No 115
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=70.98 E-value=56 Score=28.98 Aligned_cols=137 Identities=10% Similarity=0.000 Sum_probs=67.9
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceE--eeecCCCCCCCCCc
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKF--QEIQGPCTLESSLD 257 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~--~~i~lP~~~~~~~~ 257 (376)
...+.+|+.+++.-... ..........++.+ +|.-+.++... ...|..+|+.+..- ..+...... .-
T Consensus 268 dg~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~---~v 338 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQ--LPSKFTCSCNSLTVDGNNANYIYAGYE----NGMLAQWDLRSPECPVGEFLINEGT---PI 338 (420)
T ss_dssp TSCEEEEETTTCCEEEE--ECCTTSSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEEESTTS---CE
T ss_pred CCeEEEEECCCCceeEE--cccccCCCceeEEEeCCCCCEEEEEeC----CCeEEEEEcCCCcCchhhhhccCCC---Cc
Confidence 44688898887642111 10001111123333 34412233332 34789999987532 222221111 11
Q ss_pred eeEEEecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEE------CCCCceeeeEEEeeCCc----EEEEEcCCeEEEEe
Q 048178 258 VTLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSV------GPFIGIFQPLLFWKKGA----FFVESNSSQLLLYE 326 (376)
Q Consensus 258 ~~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i------~~~~~~~~~~~~~~~g~----i~~~~~~~~~~~yd 326 (376)
..+...+|.+.+.... +..+.+|.+.+ ..=..+... ........-+++..+|. ++.....+.+..|+
T Consensus 339 ~~~~~~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 339 NNVYFAAGALFVSSGF--DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEETTEEEEEETT--TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred eEEEeCCCCEEEEecC--CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 2344456765554444 78999999887 111111111 01111133355555655 77778888899998
Q ss_pred CCC
Q 048178 327 PGT 329 (376)
Q Consensus 327 ~~t 329 (376)
++.
T Consensus 417 ~~~ 419 (420)
T 3vl1_A 417 LSN 419 (420)
T ss_dssp SCC
T ss_pred ccC
Confidence 864
No 116
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=70.91 E-value=41 Score=32.97 Aligned_cols=114 Identities=14% Similarity=0.205 Sum_probs=62.8
Q ss_pred CCeEEECceEEEEeeecCCCCccEEEEEECCCc--eEeee-cCCCCCC-----CCCceeEEEecCeEEEEEecCCCCEEE
Q 048178 209 SERTYFDGAFYWLLKLENDNDNYVILSFHMAEE--KFQEI-QGPCTLE-----SSLDVTLGIYDQSLSLLLLDTVDHCFK 280 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e--~~~~i-~lP~~~~-----~~~~~~l~~~~g~L~l~~~~~~~~~l~ 280 (376)
..++..+|.+|.....+ .+.++|.++. .|+.- ..+.... ......+++.+|++++... ...+.
T Consensus 60 ~~P~v~~g~vyv~~~~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~ 130 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSWS------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DGRLI 130 (668)
T ss_dssp CCCEEETTEEEEEEGGG------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TSEEE
T ss_pred cCCEEECCEEEEECCCC------eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CCEEE
Confidence 35778999999876543 7999998764 45542 2221110 0011234556777766543 34555
Q ss_pred EEEeCC--CceeeEEEECCC---CceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEE
Q 048178 281 IWVMQK--KNWIKQSSVGPF---IGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRD 334 (376)
Q Consensus 281 vW~l~~--~~W~~~~~i~~~---~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~ 334 (376)
.+..+. ..|.....- +. .....|+. .++.+|+... .+.++.||.+|++...
T Consensus 131 alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTD-PAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp EEETTTCCEEEEEECSC-TTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEECCCCCEeeeeccCC-CCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 555444 457764311 11 11123432 2566666533 3679999999987543
No 117
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=70.55 E-value=60 Score=29.13 Aligned_cols=88 Identities=9% Similarity=0.154 Sum_probs=53.3
Q ss_pred eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeE
Q 048178 244 QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQL 322 (376)
Q Consensus 244 ~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~ 322 (376)
+.+.-|....+-+...|.-..+.+..++. +..+.||..+.++-.++..+........-+++.++|..++. ..++.+
T Consensus 95 ~~l~ap~~~~d~y~~~l~wS~~n~lAvgl---d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v 171 (420)
T 4gga_A 95 RILDAPEIRNDYYLNLVDWSSGNVLAVAL---DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 171 (420)
T ss_dssp EEEECTTCCCCTTCBCEEECTTSEEEEEE---TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEECCCCcccccceeEEECCCCEEEEEe---CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeE
Confidence 33445554433122223333444433443 67999999988766666665322223455677778887665 567889
Q ss_pred EEEeCCCCcEEE
Q 048178 323 LLYEPGTGELRD 334 (376)
Q Consensus 323 ~~yd~~t~~~~~ 334 (376)
..||+++++...
T Consensus 172 ~iWd~~~~~~~~ 183 (420)
T 4gga_A 172 QLWDVQQQKRLR 183 (420)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCCcEEE
Confidence 999999986543
No 118
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.42 E-value=47 Score=30.13 Aligned_cols=108 Identities=10% Similarity=0.183 Sum_probs=61.2
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-Ccee-
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK-KNWI- 290 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~- 290 (376)
+|.+||.... ...|..+|+++.+...+..... . ..++.. +|. |+..... ... .||.++. ..|.
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~~--~---~~ia~~~~g~~l~~~d~~-~~~--~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGFK--G---GKPAVTKDKQRVYSIGWE-GTH--TVYVYMKASGWAP 207 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEETCC--B---CBCEECTTSSEEEEEBSS-TTC--EEEEEEGGGTTCE
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeeccCC--C---CceeEecCCCcEEEEecC-CCc--eEEEEEcCCCcee
Confidence 6889987753 3489999999877766532211 1 123332 344 4444432 122 5555555 3444
Q ss_pred -eEEEECC-CCceeeeEEEee-CCcEEEEEcCCeEEEEeCCCCcEEEE
Q 048178 291 -KQSSVGP-FIGIFQPLLFWK-KGAFFVESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 291 -~~~~i~~-~~~~~~~~~~~~-~g~i~~~~~~~~~~~yd~~t~~~~~v 335 (376)
.+..+.+ ......-+++.+ +|.||+....+.++.||++++....+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 2222211 111123356666 67888876677899999998876655
No 119
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=70.38 E-value=56 Score=28.70 Aligned_cols=188 Identities=5% Similarity=-0.047 Sum_probs=90.5
Q ss_pred eecceEEEe-ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIE-GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-.++. .....+.|||..+++....-... ... ...+.+.+..+.+- +... ....+
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h----~~~-----v~~v~~s~~~~~~~-~s~~-----------~dg~v 206 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH----SSE-----VNCVAACPGKDTIF-LSCG-----------EDGRI 206 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEECCC----SSC-----EEEEEECTTCSSCE-EEEE-----------TTSCE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC----CCC-----EEEEEEccCCCcee-eeec-----------cCCce
Confidence 445544444 45677899999988765421110 111 23445544443332 2221 13467
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEE
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLG 261 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~ 261 (376)
.+++.+++.-........ ......++.+ ++.+...+.. ...|..+|+.+.+-. .+..... .-..+.
T Consensus 207 ~~wd~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~la~g~~-----d~~i~~wd~~~~~~~~~~~~~~~----~v~~l~ 276 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFCA-SDTIPTSVTWHPEKDDTFACGDE-----TGNVSLVNIKNPDSAQTSAVHSQ----NITGLA 276 (357)
T ss_dssp EECCTTSSSCBCBCCCTT-CCSCEEEEEECTTSTTEEEEEES-----SSCEEEEESSCGGGCEEECCCSS----CEEEEE
T ss_pred EEEECCCCceeeeeeecc-ccccccchhhhhcccceEEEeec-----ccceeEEECCCCcEeEEEeccce----eEEEEE
Confidence 888877654221110100 0011123333 2333333322 236888898775432 2221111 112333
Q ss_pred Ee-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEE-EcCCeEEEEeCCCC
Q 048178 262 IY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVE-SNSSQLLLYEPGTG 330 (376)
Q Consensus 262 ~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~-~~~~~~~~yd~~t~ 330 (376)
.. +|. +.+.+.. +..+.||.++.++ .+..+ .......-+++.+ ++.+++. ..++.+..||+.++
T Consensus 277 ~sp~~~~~lasgs~--D~~i~iwd~~~~~--~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 277 YSYHSSPFLASISE--DCTVAVLDADFSE--VFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ECSSSSCCEEEEET--TSCEEEECTTSCE--EEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EcCCCCCEEEEEeC--CCEEEEEECCCCc--EeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 32 454 4333434 6889999877632 23333 2332334456664 6776665 56788999998664
No 120
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=70.18 E-value=66 Score=29.44 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=64.2
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-EEEEEecCC-CCEEEEEEeCCCceee
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTV-DHCFKIWVMQKKNWIK 291 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~-~~~l~vW~l~~~~W~~ 291 (376)
+|.||+.... ..|..||+++.+...+..+.. ....++.- +|+ |++...... .....+|...++.|..
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~~~~----~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~ 218 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYSGLS----KVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKV 218 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEECCCS----CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCS
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEecCCC----CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceee
Confidence 3888887653 379999999988766632111 11334443 566 888776322 2334455555555653
Q ss_pred EEEECCCCceeeeEEEee-CCcEEEEE-cCCeEEEEeCCCCcEEEE
Q 048178 292 QSSVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~-~g~i~~~~-~~~~~~~yd~~t~~~~~v 335 (376)
...+..+. ...-+++.+ +|.||+.. ..+++..||++++....+
T Consensus 219 ~~~l~~~~-~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 219 ITELTKGQ-NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp EEEEEECS-SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeeccCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 33331111 112245565 67888875 457899999998876433
No 121
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=69.91 E-value=59 Score=28.76 Aligned_cols=67 Identities=6% Similarity=-0.006 Sum_probs=42.6
Q ss_pred EEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEEE-e--cceEEEEEee
Q 048178 278 CFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFEL-E--CCWFSIYIYT 348 (376)
Q Consensus 278 ~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~~-~--~~~~~~~~y~ 348 (376)
.+.+|-++ ....+.++ +... ..-+++..+|+.++..+.+.+.+||.+|++++.+.. . |..+..+...
T Consensus 287 ~v~viD~~--t~~~v~~i-~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 287 EIWVMDTK--TKQRVARI-PGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp EEEEEETT--TTEEEEEE-ECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred eEEEEECC--CCcEEEEE-ecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence 45555544 45677788 6665 455677778886655444789999999996666643 2 2355555443
No 122
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=69.67 E-value=34 Score=30.48 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=75.3
Q ss_pred ecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|.|.+......++.+|+.|++.+. .+..+ .. . . .+..+ + +++... ...-.+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~-~~-s-------~-p~~~~---g--~~~v~~----------s~dg~l~ 62 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDP-VL-Q-------V-PTHVE---E--PAFLPD----------PNDGSLY 62 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCC-SC-C-------C-C----------CCEEEC----------TTTCCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCC-ce-e-------c-ceEcC---C--CEEEEe----------CCCCEEE
Confidence 46778777777788999999988543 22111 00 0 0 00001 1 111110 1133566
Q ss_pred EEEcCCC--ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEe
Q 048178 187 VYNLSTN--SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY 263 (376)
Q Consensus 187 vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~ 263 (376)
.++.+++ .|+.-...+. .......+..+|.+|.-..+ ..+.++|.++.+-.+. ..+... ...-.
T Consensus 63 a~d~~tG~~~w~~~~~~~~-~~~~sp~~~~~~~v~~g~~d------g~v~a~D~~tG~~~w~~~~~~~~------~~~p~ 129 (369)
T 2hz6_A 63 TLGSKNNEGLTKLPFTIPE-LVQASPCRSSDGILYMGKKQ------DIWYVIDLLTGEKQQTLSSAFAD------SLSPS 129 (369)
T ss_dssp EC-----CCSEECSCCHHH-HHTTCSCC-----CCCCEEE------EEEEEECCC-------------------------
T ss_pred EEECCCCceeeeeeccCcc-ccccCceEecCCEEEEEeCC------CEEEEEECCCCcEEEEecCCCcc------ccccc
Confidence 6666554 5764221110 00111122257777754433 3799999987543222 222111 11113
Q ss_pred cCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEee----CCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWK----KGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~----~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
++.+++... ...+..|..+. ..|.....- ...| .+.. ++.+++...++.+..+|.++++..
T Consensus 130 ~~~v~~~~~---dg~v~a~d~~tG~~~W~~~~~~-----~~~~-~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 130 TSLLYLGRT---EYTITMYDTKTRELRWNATYFD-----YAAS-LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp ---EEEEEE---EEEEECCCSSSSSCCCEEEEEE-----ECCB-CCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred CCEEEEEec---CCEEEEEECCCCCEEEeEeccc-----ccCc-cccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 334554433 34555665554 458765321 0111 1122 256777777888999999988754
No 123
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=69.44 E-value=46 Score=27.39 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=93.3
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCC-CceE
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLST-NSWR 196 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t-~~W~ 196 (376)
...+++||+.+++...+...... ...+.+.|.. .+-++. . ...+.+++..+ +..+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~----------v~~~~~spdg-~~l~~~--~-----------~~~i~~~d~~~~~~~~ 76 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPEL----------FEAPNWSPDG-KYLLLN--S-----------EGLLYRLSLAGDPSPE 76 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSC----------CEEEEECTTS-SEEEEE--E-----------TTEEEEEESSSCCSCE
T ss_pred ceeEEEEeCCCCceeeeccCCcc----------eEeeEECCCC-CEEEEE--c-----------CCeEEEEeCCCCCCce
Confidence 45789999999887765432111 1345555543 332221 1 33788999988 7666
Q ss_pred eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-EEEEEecC
Q 048178 197 NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS-LSLLLLDT 274 (376)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~ 274 (376)
.+...........-...-+|........... ....|..+|..+.....+..... ...+... +|+ |++....
T Consensus 77 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~- 149 (297)
T 2ojh_A 77 KVDTGFATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP-----SYWHGWSPDGKSFTYCGIR- 149 (297)
T ss_dssp ECCCTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSSSS-----EEEEEECTTSSEEEEEEEE-
T ss_pred EeccccccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecCCC-----ccceEECCCCCEEEEEECC-
Confidence 5542211111111122235654433331110 14578888887766544432211 1222222 555 4434443
Q ss_pred CCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCc-EEEEEc---CCeEEEEeCCCCcEEEEE
Q 048178 275 VDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESN---SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 275 ~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~---~~~~~~yd~~t~~~~~v~ 336 (376)
...+.||.++. .... .+........-+.+..+|+ +++... ...++.+++.++..+.+.
T Consensus 150 -~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 150 -DQVFDIYSMDIDSGVET---RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp -TTEEEEEEEETTTCCEE---ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred -CCceEEEEEECCCCcce---EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 56789999764 3322 2211221233345566777 444432 345777777777776663
No 124
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=69.18 E-value=52 Score=27.87 Aligned_cols=188 Identities=12% Similarity=0.166 Sum_probs=96.9
Q ss_pred ecc-eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCG-IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+| +++.......+.+||..+++.......... ... ...+.+.+. +.+- +... ....+.
T Consensus 107 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~-----i~~~~~~~~-~~~l-~~~~-----------~dg~v~ 166 (337)
T 1gxr_A 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APA-----CYALAISPD-SKVC-FSCC-----------SDGNIA 166 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECS--SSC-----EEEEEECTT-SSEE-EEEE-----------TTSCEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCCcceeeecccC--CCc-----eEEEEECCC-CCEE-EEEe-----------CCCcEE
Confidence 344 455555567889999988763322111111 000 234555543 2322 2211 134688
Q ss_pred EEEcCCCceEe-ccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 187 VYNLSTNSWRN-LKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 187 vyss~t~~W~~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
+|+.+++.-.. +.... .....+.+ +|.....+.. ...|..+|+.+.+-.. +..+.. ...+..
T Consensus 167 ~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~-----v~~~~~ 232 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHT----DGASCIDISNDGTKLWTGGL-----DNTVRSWDLREGRQLQQHDFTSQ-----IFSLGY 232 (337)
T ss_dssp EEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECSSC-----EEEEEE
T ss_pred EEeCCCCceeeeeeccc----CceEEEEECCCCCEEEEEec-----CCcEEEEECCCCceEeeecCCCc-----eEEEEE
Confidence 89988764322 11110 11122333 5554444433 3478999998765432 232211 123333
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
. +|...++... ...+.+|.++..+ ...+........-+.+.++|..++. ..++.+..||+++++...
T Consensus 233 s~~~~~l~~~~~--~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 233 CPTGEWLAVGME--SSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp CTTSSEEEEEET--TSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCCEEEEEcC--CCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 2 5555555544 6789999988732 1223122222344566667776554 567889999999987663
No 125
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=68.85 E-value=50 Score=27.53 Aligned_cols=193 Identities=9% Similarity=0.037 Sum_probs=100.3
Q ss_pred eeeeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCc
Q 048178 104 FKGLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPF 182 (376)
Q Consensus 104 ~~~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 182 (376)
+....+|-+.+.+. ...+.++||. ++...++.+... . . ..++..|+... +... . ...
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~--~-~-----~~~i~~~~~g~---l~v~-~---------~~~ 82 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPD--A-K-----VMCLIVSSLGD---IWFT-E---------NGA 82 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT--C-C-----EEEEEECTTSC---EEEE-E---------TTT
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCC--C-c-----ceeEEECCCCC---EEEE-e---------cCC
Confidence 33344676666653 5678999998 766654432110 1 1 24566664332 2111 1 113
Q ss_pred ceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeE
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTL 260 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l 260 (376)
..+..|+.. +..+..... ... ....++.+ +|.+|+... . ...|..+|.+ .+...+.+|.... ....+
T Consensus 83 ~~v~~~d~~-g~~~~~~~~-~~~-~~~~~i~~~~~g~l~v~~~-~----~~~i~~~~~~-g~~~~~~~~~~~~--~~~~i 151 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLP-QPD-SGPYGITEGLNGDIWFTQL-N----GDRIGKLTAD-GTIYEYDLPNKGS--YPAFI 151 (300)
T ss_dssp TEEEEECTT-SCEEEEECS-STT-CCEEEEEECSTTCEEEEET-T----TTEEEEECTT-SCEEEEECSSTTC--CEEEE
T ss_pred CeEEEECCC-CCeEEecCC-CCC-CCCccceECCCCCEEEEcc-C----CCeEEEECCC-CCEEEccCCCCCC--CceeE
Confidence 467777777 655544311 101 11123443 577665443 2 3379999998 6666665553221 12334
Q ss_pred EE-ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEEc-CCeEEEEeCCCCcEEEEE
Q 048178 261 GI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVESN-SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 261 ~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~-~~~~~~yd~~t~~~~~v~ 336 (376)
+. -+|+|++.... ...+.++.. +++... ..+ +.. ...| +++..+|.+++... .+.+..||+ ++++..+.
T Consensus 152 ~~d~~g~l~v~~~~--~~~i~~~~~-~g~~~~-~~~-~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 152 TLGSDNALWFTENQ--NNSIGRITN-TGKLEE-YPL-PTN-AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp EECTTSSEEEEETT--TTEEEEECT-TCCEEE-EEC-SST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred EECCCCCEEEEecC--CCeEEEECC-CCcEEE-eeC-CCC-CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence 44 35677776653 344444444 244443 223 221 2233 34445778988865 457999999 55555543
No 126
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=68.48 E-value=59 Score=28.18 Aligned_cols=105 Identities=11% Similarity=0.121 Sum_probs=60.3
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ecCeEEEEEecCCCCEEEEEEeCCCceeeEE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQS 293 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~ 293 (376)
+|.+||..... ..|..+|.++.+...+..|... ..++. -+|++.+... ..+.+|..+.++...+.
T Consensus 60 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~~~~v-----~~i~~~~dg~l~v~~~----~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 60 SGTAWWFNILE-----RELHELHLASGRKTVHALPFMG-----SALAKISDSKQLIASD----DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp TTEEEEEEGGG-----TEEEEEETTTTEEEEEECSSCE-----EEEEEEETTEEEEEET----TEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEECCCcc-----eEEEEeCCCeEEEEEC----CCEEEEECCCCcEEEEe
Confidence 37899987553 3799999998887766655321 23333 4677666542 23555555455555443
Q ss_pred EECC-CC-ceeeeEEEeeCCcEEEEEc-------CCeEEEEeCCCCcEEEE
Q 048178 294 SVGP-FI-GIFQPLLFWKKGAFFVESN-------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 294 ~i~~-~~-~~~~~~~~~~~g~i~~~~~-------~~~~~~yd~~t~~~~~v 335 (376)
.... .. ....-+.+..+|.+++... .+.++.|| +++++.+
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 3211 11 1122345556788887643 25688888 5666554
No 127
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.39 E-value=65 Score=28.65 Aligned_cols=110 Identities=11% Similarity=0.024 Sum_probs=61.4
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEec-C-eEEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYD-Q-SLSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~-g-~L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
+|.....+.. ...|..+|+.+..-......... .-..+.... | .+.+.+....+..+.+|.+..+.- +
T Consensus 228 ~~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~ 297 (401)
T 4aez_A 228 DGLQLASGGN-----DNVVQIWDARSSIPKFTKTNHNA---AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--V 297 (401)
T ss_dssp TSSEEEEEET-----TSCEEEEETTCSSEEEEECCCSS---CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--E
T ss_pred CCCEEEEEeC-----CCeEEEccCCCCCccEEecCCcc---eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--E
Confidence 4554444433 23788999987544332111111 112344432 3 355554323478999999987433 3
Q ss_pred EEECCCCceeeeEEEeeCCcEEEE-E--cCCeEEEEeCCCCcEEEE
Q 048178 293 SSVGPFIGIFQPLLFWKKGAFFVE-S--NSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~g~i~~~-~--~~~~~~~yd~~t~~~~~v 335 (376)
..+ ....-..-+++..+|..++. . .++.+..||.++++...+
T Consensus 298 ~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 298 NTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp EEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred EEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 333 12222344566667776654 3 478899999999876654
No 128
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=67.73 E-value=63 Score=28.28 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=90.6
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
.|+....+..+.+||..+++....-.. +... ...+.+.+..+.-.++... ....+.+++.
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~----h~~~-----v~~~~~~~~~~g~~l~sgs-----------~Dg~v~~wd~ 227 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHG----HGAD-----VLCLDLAPSETGNTFVSGG-----------CDKKAMVWDM 227 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC----CSSC-----EEEEEECCCSSCCEEEEEE-----------TTSCEEEEET
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcC----CCCC-----eEEEEEEeCCCCCEEEEEe-----------CCCeEEEEEC
Confidence 444455577889999988875431110 0000 1234444443322333221 2457888998
Q ss_pred CCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEE-ecCe
Q 048178 191 STNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGI-YDQS 266 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~-~~g~ 266 (376)
+++.-...-.. ......++.+ +|.....+.. ...|-.+|+.+..-..+ ....... ....+.- .+|.
T Consensus 228 ~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~-----D~~v~lwd~~~~~~~~~~~~~~~~~--~~~~~~~s~~g~ 297 (354)
T 2pbi_B 228 RSGQCVQAFET---HESDVNSVRYYPSGDAFASGSD-----DATCRLYDLRADREVAIYSKESIIF--GASSVDFSLSGR 297 (354)
T ss_dssp TTCCEEEEECC---CSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCTTCCS--CEEEEEECTTSS
T ss_pred CCCcEEEEecC---CCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCcEEEEEcCCCccc--ceeEEEEeCCCC
Confidence 88754221100 0011123333 3544433332 23688899887643322 2211110 0112222 2566
Q ss_pred EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEe
Q 048178 267 LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYE 326 (376)
Q Consensus 267 L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd 326 (376)
+.+.... +..+.||.+..+ ..+..+.....-..-+++.++|..++. ..++.+.+|+
T Consensus 298 ~l~~g~~--d~~i~vwd~~~~--~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFAGYN--DYTINVWDVLKG--SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEET--TSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEEC--CCcEEEEECCCC--ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 6666654 789999998762 234444222222444666778876655 4567676664
No 129
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=67.55 E-value=65 Score=28.35 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=53.4
Q ss_pred cEEEEEECCCceEee-ecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe
Q 048178 231 YVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW 308 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~ 308 (376)
..|..+|+.+.+... +... .. .-..+... +|.+.++... +..+.+|.++..+-. ..+........-+.+.
T Consensus 227 g~i~~~d~~~~~~~~~~~~~-~~---~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~ 298 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGH-HG---PISVLEFNDTNKLLLSASD--DGTLRIWHGGNGNSQ--NCFYGHSQSIVSASWV 298 (425)
T ss_dssp GCEEEEETTCSSCSEEECCC-SS---CEEEEEEETTTTEEEEEET--TSCEEEECSSSBSCS--EEECCCSSCEEEEEEE
T ss_pred CeEEEEEcCCCceeeeeccC-CC---ceEEEEECCCCCEEEEEcC--CCEEEEEECCCCccc--eEecCCCccEEEEEEC
Confidence 478899988764322 2211 10 11233333 4555555444 678999998873222 2231122223445556
Q ss_pred eCCcEEEEEcCCeEEEEeCCCCcEEE
Q 048178 309 KKGAFFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 309 ~~g~i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
+++.++....++.+..||+++++...
T Consensus 299 ~~~~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 299 GDDKVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp TTTEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEeE
Confidence 66744445678889999998876544
No 130
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=67.20 E-value=1.3e+02 Score=31.59 Aligned_cols=193 Identities=11% Similarity=0.110 Sum_probs=97.0
Q ss_pred eecce-EEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGI-VFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gl-l~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
|.+|- +........+.|||..|++... +..- ... ...+.+.+.. .+-+.+ . ....
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h-----~~~-----v~~~~~s~~~-~~l~s~--~----------~d~~ 680 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAH-----EDE-----VLCCAFSSDD-SYIATC--S----------ADKK 680 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----SSC-----EEEEEECTTS-SEEEEE--E----------TTSE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC-----CCC-----EEEEEEecCC-CEEEEE--e----------CCCe
Confidence 44554 4434556788999999987543 3311 111 2355565433 332222 1 1457
Q ss_pred EEEEEcCCCceEe-ccccCccccCCCCeEEEC---ceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeE
Q 048178 185 VTVYNLSTNSWRN-LKSIDYTMRLSSERTYFD---GAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTL 260 (376)
Q Consensus 185 ~~vyss~t~~W~~-~~~~~~~~~~~~~~v~~~---G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l 260 (376)
+.|++..++.-.. ..... ....++.+. ...+...... ...|..+|+.+......-.... . .-..+
T Consensus 681 v~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~sg~~----d~~v~vwd~~~~~~~~~~~~h~-~--~v~~~ 749 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTYDEHS----EQVNCCHFTNKSNHLLLATGSN----DFFLKLWDLNQKECRNTMFGHT-N--SVNHC 749 (1249)
T ss_dssp EEEEETTTCCEEEEEECCS----SCEEEEEECSSSSCCEEEEEET----TSCEEEEETTSSSEEEEECCCS-S--CEEEE
T ss_pred EEEEECCCCceEEEEcCCC----CcEEEEEEecCCCceEEEEEeC----CCeEEEEECCCcchhheecCCC-C--CEEEE
Confidence 8999998874322 11110 011122221 1122222222 3368889988765433211111 0 11223
Q ss_pred EEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECC--------C---CceeeeEEEeeCCcEEEEEcCCeEEEEeCC
Q 048178 261 GIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGP--------F---IGIFQPLLFWKKGAFFVESNSSQLLLYEPG 328 (376)
Q Consensus 261 ~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~--------~---~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~ 328 (376)
... +|...+.+.. +..+.+|.+....-........ . ......+++..+|..++....+.+..||..
T Consensus 750 ~~sp~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 750 RFSPDDELLASCSA--DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EECSSTTEEEEEES--SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEecCCCEEEEEEC--CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 332 5555555544 7889999988733222222100 0 001223455668887777667889999999
Q ss_pred CCcEEEE
Q 048178 329 TGELRDF 335 (376)
Q Consensus 329 t~~~~~v 335 (376)
++.....
T Consensus 828 ~~~~~~~ 834 (1249)
T 3sfz_A 828 TSGLLAE 834 (1249)
T ss_dssp TCCEEEE
T ss_pred CCCceeE
Confidence 8865543
No 131
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=67.11 E-value=54 Score=31.40 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=62.0
Q ss_pred CCeEEECceEEEEee-ecCCCCccEEEEEEC-CCc--eEeeecCCCCCC-------CCCceeEEEecCeEEEEEecCCCC
Q 048178 209 SERTYFDGAFYWLLK-LENDNDNYVILSFHM-AEE--KFQEIQGPCTLE-------SSLDVTLGIYDQSLSLLLLDTVDH 277 (376)
Q Consensus 209 ~~~v~~~G~lywl~~-~~~~~~~~~i~~fD~-~~e--~~~~i~lP~~~~-------~~~~~~l~~~~g~L~l~~~~~~~~ 277 (376)
..++..+|.+|.... .+ .+.++|. ++. .|+. .++.... ......++..+|++++... ..
T Consensus 56 ~~P~v~~g~vyv~~~~~~------~v~AlD~~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg 125 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFPN------NTYALNLNDPGKIVWQH-KPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA---NG 125 (571)
T ss_dssp SCCEEETTEEEEECSTTT------CEEEEETTCTTSEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TS
T ss_pred cccEEECCEEEEEeCCCC------EEEEEeCCCCccEEEEE-cCCCCccccccccccccccccEEECCEEEEEeC---CC
Confidence 357788999998765 22 6999998 654 4553 2222110 0011234556777766543 34
Q ss_pred EEEEEEeCC--CceeeEEEECC--CCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEE
Q 048178 278 CFKIWVMQK--KNWIKQSSVGP--FIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRD 334 (376)
Q Consensus 278 ~l~vW~l~~--~~W~~~~~i~~--~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~ 334 (376)
.+.....+. ..|.....-.+ ......|+. . +|.+|+... .+.++.||.+|++...
T Consensus 126 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-A-KDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E-TTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EEEEEECCCCCEEEEecCCCCCccceeccCCEE-E-CCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 444444433 45765421100 011133433 2 566776644 5789999999887553
No 132
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=66.77 E-value=31 Score=29.52 Aligned_cols=109 Identities=8% Similarity=0.024 Sum_probs=59.6
Q ss_pred Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 215 DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 215 ~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
+|. +||..... ..|..+|.. .....+..|... ...++.- +|+|++.... ...+.+|..+ ++...+
T Consensus 55 ~g~~l~~~d~~~-----~~i~~~~~~-g~~~~~~~~~~~----~~gl~~d~dG~l~v~~~~--~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 55 AQRTLVWSDLVG-----RRVLGWRED-GTVDVLLDATAF----TNGNAVDAQQRLVHCEHG--RRAITRSDAD-GQAHLL 121 (305)
T ss_dssp GGTEEEEEETTT-----TEEEEEETT-SCEEEEEESCSC----EEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEE
T ss_pred CCCEEEEEECCC-----CEEEEEeCC-CCEEEEeCCCCc----cceeeECCCCCEEEEECC--CCEEEEECCC-CCEEEE
Confidence 454 88887543 378888884 445555433321 1233332 6676655432 4566666554 444333
Q ss_pred EEECCCCce--eeeEEEeeCCcEEEEE------------------cCCeEEEEeCCCCcEEEEE
Q 048178 293 SSVGPFIGI--FQPLLFWKKGAFFVES------------------NSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 293 ~~i~~~~~~--~~~~~~~~~g~i~~~~------------------~~~~~~~yd~~t~~~~~v~ 336 (376)
......... ..-+++.++|.+++.. ..+.++.||+++++++.+.
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 211011101 1225666788999852 1256999999888877664
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=66.49 E-value=62 Score=27.74 Aligned_cols=182 Identities=13% Similarity=0.047 Sum_probs=90.2
Q ss_pred CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCce-
Q 048178 118 NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSW- 195 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W- 195 (376)
...++++|+.|++... ++.... ..++.+++.. .+-++.- .....+.+++..+++-
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~s~dg-~~l~v~~-----------~~~~~v~~~d~~~~~~~ 124 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLK-----------PFGATINNTT-QTLWFGN-----------TVNSAVTAIDAKTGEVK 124 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-----------CCSEEEETTT-TEEEEEE-----------TTTTEEEEEETTTCCEE
T ss_pred CccEEEEcCCCCeEEEEEecCCC-----------cceEEECCCC-CEEEEEe-----------cCCCEEEEEeCCCCeeE
Confidence 3478999999887544 332111 1234445433 3322221 1245788999888753
Q ss_pred EeccccCccc-----cCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE-ecCe
Q 048178 196 RNLKSIDYTM-----RLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI-YDQS 266 (376)
Q Consensus 196 ~~~~~~~~~~-----~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~-~~g~ 266 (376)
+.+....... +.....+.+ +|...+++..+. ...|..+|.++.+... ++...... ..+.. -+|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~s~dg~ 197 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK---ESVIWVVDGGNIKLKTAIQNTGKMS----TGLALDSEGK 197 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS---SCEEEEEETTTTEEEEEECCCCTTC----CCCEEETTTT
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC---CceEEEEcCCCCceEEEecCCCCcc----ceEEECCCCC
Confidence 2222110000 000123333 565434443221 3479999998876543 34222111 12222 3555
Q ss_pred EEEEEecCCCCEEEEEEeCCCceeeEEEECCC-----CceeeeEEEeeCCc-EEEEEc-CCeEEEEeCCCCcEEE
Q 048178 267 LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPF-----IGIFQPLLFWKKGA-FFVESN-SSQLLLYEPGTGELRD 334 (376)
Q Consensus 267 L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~-----~~~~~~~~~~~~g~-i~~~~~-~~~~~~yd~~t~~~~~ 334 (376)
..++... ...+.+|.++.. ..+..+ +. .....-+++..+|+ +++... .+.+..||+++++..+
T Consensus 198 ~l~~~~~--~~~i~~~d~~~~--~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 198 RLYTTNA--DGELITIDTADN--KILSRK-KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp EEEEECT--TSEEEEEETTTT--EEEEEE-ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred EEEEEcC--CCeEEEEECCCC--eEEEEE-EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 3333332 567777777663 233333 11 11122356677777 555544 4789999999887543
No 134
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=66.27 E-value=62 Score=27.66 Aligned_cols=104 Identities=8% Similarity=-0.007 Sum_probs=59.0
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEe--CCCceee
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVM--QKKNWIK 291 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l--~~~~W~~ 291 (376)
+|.+||.... ...|..+|.+...-..+..+.. ...++.. +|+|+++... .....|+.+ ++++...
T Consensus 42 ~g~lyv~d~~-----~~~I~~~d~~g~~~~~~~~~~~-----p~gia~~~dG~l~vad~~--~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 42 DGTIFVTNHE-----VGEIVSITPDGNQQIHATVEGK-----VSGLAFTSNGDLVATGWN--ADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp TSCEEEEETT-----TTEEEEECTTCCEEEEEECSSE-----EEEEEECTTSCEEEEEEC--TTSCEEEEEECTTSCEEE
T ss_pred CCCEEEEeCC-----CCeEEEECCCCceEEEEeCCCC-----ceeEEEcCCCcEEEEecc--CCcceEEEEcCCCCeEEE
Confidence 6889987643 3479999988765444454421 1234443 6778777653 222345544 3465655
Q ss_pred EEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 292 QSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
+..+ +......-.+.+.++.+++.. ..+.++.+|+.+++
T Consensus 110 ~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 110 LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 5554 322122222334456677665 36789999988753
No 135
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=66.00 E-value=1.1e+02 Score=30.60 Aligned_cols=173 Identities=9% Similarity=-0.001 Sum_probs=92.0
Q ss_pred EEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCC
Q 048178 152 IGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDN 228 (376)
Q Consensus 152 ~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~ 228 (376)
.++++|...+. |... . .....++++++.+..-+.+.... + ....++.+ +|.|||.....
T Consensus 474 ~GLAvD~~~~~--LY~t------D----~~~~~I~v~~ldG~~~~~l~~~~--l-~~P~gIaVDp~~g~LYwtD~g~--- 535 (791)
T 3m0c_C 474 DGLAVDWIHSN--IYWT------D----SVLGTVSVADTKGVKRKTLFREN--G-SKPRAIVVDPVHGFMYWTDWGT--- 535 (791)
T ss_dssp CEEEEETTTTE--EEEE------E----TTTTEEEEEETTSSSEEEEEECT--T-CCEEEEEEETTTTEEEEEECSS---
T ss_pred ceeeeeecCCc--EEEE------e----cCCCeEEEEeCCCCeEEEEEeCC--C-CCcceEEEecCCCCEEEecCCC---
Confidence 46777766543 2222 1 23558888888876655443211 1 11235555 58999987432
Q ss_pred CccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--cCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeE
Q 048178 229 DNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY--DQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPL 305 (376)
Q Consensus 229 ~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~ 305 (376)
...|..+++....-..+-- ... .....|++- +|.||++... ...|.+..++. .....+. ....+..|+
T Consensus 536 -~~~I~~~~~dG~~~~~lv~-~~l--~~P~GLavD~~~~~LYwaD~~--~~~I~~~d~dG~~~~~v~~---~~~~l~~P~ 606 (791)
T 3m0c_C 536 -PAKIKKGGLNGVDIYSLVT-ENI--QWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILE---DEKRLAHPF 606 (791)
T ss_dssp -SCEEEEEETTSCCEEEEEC-SSC--SCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEE---CTTTTSSEE
T ss_pred -CCeEEEEecCCCceEEEEe-CCC--CCceEEEEecCCCeEEEEeCC--CCcEEEEecCCCceEEEec---CCCccCCCC
Confidence 2479999987655444321 111 112345543 6779988764 55666666654 2222221 112234666
Q ss_pred EEee-CCcEEEEEc-CCeEEEEeCCCCc-EEEEEEecc-eEEEEEeecCc
Q 048178 306 LFWK-KGAFFVESN-SSQLLLYEPGTGE-LRDFELECC-WFSIYIYTESL 351 (376)
Q Consensus 306 ~~~~-~g~i~~~~~-~~~~~~yd~~t~~-~~~v~~~~~-~~~~~~y~~sL 351 (376)
++.- ++.||+... .+.|...|..+++ .+.|...-. -..+.+|.+..
T Consensus 607 glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~ 656 (791)
T 3m0c_C 607 SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 656 (791)
T ss_dssp EEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred EEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence 7654 455777654 5678899976663 444421111 23344555443
No 136
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=65.89 E-value=61 Score=27.42 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=91.9
Q ss_pred EEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcC
Q 048178 112 VFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLS 191 (376)
Q Consensus 112 l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~ 191 (376)
|+....+..+.|||..+++....-... . . ....+.+.+.. .+ ++.. .....+.+|+.+
T Consensus 38 l~s~~~dg~i~iw~~~~~~~~~~~~~h----~-~----~v~~~~~~~~~-~~-l~s~-----------~~d~~i~vwd~~ 95 (312)
T 4ery_A 38 LASSSADKLIKIWGAYDGKFEKTISGH----K-L----GISDVAWSSDS-NL-LVSA-----------SDDKTLKIWDVS 95 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCC----S-S----CEEEEEECTTS-SE-EEEE-----------ETTSEEEEEETT
T ss_pred EEEeeCCCeEEEEeCCCcccchhhccC----C-C----ceEEEEEcCCC-CE-EEEE-----------CCCCEEEEEECC
Confidence 333344567789998887765422111 1 0 12356665533 22 2221 124578888888
Q ss_pred CCceE-eccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeE
Q 048178 192 TNSWR-NLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSL 267 (376)
Q Consensus 192 t~~W~-~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L 267 (376)
++.-. .+.... .....+.+ +|.+...+. . ...|..+|+++.+.... ++.... .-..+... +|.+
T Consensus 96 ~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~-~----d~~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~ 163 (312)
T 4ery_A 96 SGKCLKTLKGHS----NYVFCCNFNPQSNLIVSGS-F----DESVRIWDVKTGKCLKT-LPAHSD--PVSAVHFNRDGSL 163 (312)
T ss_dssp TCCEEEEEECCS----SCEEEEEECSSSSEEEEEE-T----TSCEEEEETTTCCEEEE-ECCCSS--CEEEEEECTTSSE
T ss_pred CCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEe-C----CCcEEEEECCCCEEEEE-ecCCCC--cEEEEEEcCCCCE
Confidence 76421 111100 00011212 233332222 2 23688899887653221 111111 01223332 5555
Q ss_pred EEEEecCCCCEEEEEEeCCCceeeEEEEC-CCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 268 SLLLLDTVDHCFKIWVMQKKNWIKQSSVG-PFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 268 ~l~~~~~~~~~l~vW~l~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
.+.... +..+.+|.+...+-. ..+. ........+++.++|..++. ..++.+..||+++++...
T Consensus 164 l~~~~~--d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 164 IVSSSY--DGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp EEEEET--TSCEEEEETTTCCEE--EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEEeC--CCcEEEEECCCCcee--eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 555554 678999998874332 2221 11112334566667776554 567889999999886543
No 137
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=65.82 E-value=51 Score=28.23 Aligned_cols=106 Identities=8% Similarity=-0.013 Sum_probs=58.4
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceee
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIK 291 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~ 291 (376)
++.+|.... . ...|..+|+++.+.. .++++..... ..++.. +|+ +++... ....+.+|.++..+-..
T Consensus 10 ~~~~~v~~~-~----~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 10 GHEYMIVTN-Y----PNNLHVVDVASDTVYKSCVMPDKFGP---GTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp TCEEEEEEE-T----TTEEEEEETTTTEEEEEEECSSCCSS---CEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEE
T ss_pred CCEEEEEeC-C----CCeEEEEECCCCcEEEEEecCCCCCC---ceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEE
Confidence 455554443 3 348999999887653 4566542111 233333 555 444443 36788888887644333
Q ss_pred EEEECCCC-----ceeeeEEEeeCCcEE-EEEc------------CCeEEEEeCCCCc
Q 048178 292 QSSVGPFI-----GIFQPLLFWKKGAFF-VESN------------SSQLLLYEPGTGE 331 (376)
Q Consensus 292 ~~~i~~~~-----~~~~~~~~~~~g~i~-~~~~------------~~~~~~yd~~t~~ 331 (376)
...+ +.. ....-+++.++|+.+ +... .+.+..||+++++
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 80 HANL-SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEES-CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEc-ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 3222 110 002335667778744 4442 3789999998843
No 138
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=65.38 E-value=65 Score=27.57 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=69.5
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE-----CceEEEEeeecCCCCccEEEEEECCCceEe-eec---CCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF-----DGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQ---GPCTL 252 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~-----~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~---lP~~~ 252 (376)
...+.+|+.+++.=....... ....++.+ +|.....+.. ...|..+|+.+..-. .+. +....
T Consensus 189 d~~i~i~d~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~ 259 (357)
T 3i2n_A 189 NGDIKLFDLRNMALRWETNIK----NGVCSLEFDRKDISMNKLVATSL-----EGKFHVFDMRTQHPTKGFASVSEKAHK 259 (357)
T ss_dssp TSEEEEEETTTTEEEEEEECS----SCEEEEEESCSSSSCCEEEEEES-----TTEEEEEEEEEEETTTEEEEEEEECCS
T ss_pred CCeEEEEECccCceeeecCCC----CceEEEEcCCCCCCCCEEEEECC-----CCeEEEEeCcCCCcccceeeeccCCCc
Confidence 457889998887532221111 11123333 4454444433 236777887654321 111 11111
Q ss_pred CCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-----------------CceeeEEEECCCCceeeeEEEeeCCcE
Q 048178 253 ESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK-----------------KNWIKQSSVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 253 ~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~-----------------~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (376)
. .-..+... +|. +.+.... +..+.||.++. +++..+..+.....-..-+++..+|..
T Consensus 260 ~--~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 335 (357)
T 3i2n_A 260 S--TVWQVRHLPQNRELFLTAGG--AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335 (357)
T ss_dssp S--CEEEEEEETTEEEEEEEEET--TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred C--CEEEEEECCCCCcEEEEEeC--CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence 0 11233333 345 4444444 78999999875 134556555222222344566677775
Q ss_pred EE--EEcCCeEEEEeCCCC
Q 048178 314 FV--ESNSSQLLLYEPGTG 330 (376)
Q Consensus 314 ~~--~~~~~~~~~yd~~t~ 330 (376)
++ ...++.+..||+++.
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 54 456788999998764
No 139
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=65.33 E-value=71 Score=27.98 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=71.5
Q ss_pred cceEEEEEcCCCceEe-ccccCccc--cCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCC---
Q 048178 182 FSLVTVYNLSTNSWRN-LKSIDYTM--RLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTL--- 252 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~-~~~~~~~~--~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~--- 252 (376)
...+.+|+.+++.-.. +....... .....++.+ +|.+...+..+. ....|..+|+.+.+. ..+..|...
T Consensus 206 dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 206 NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC------
T ss_pred CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccc
Confidence 5578899988764321 11100000 111123333 455444443320 014799999877543 333332110
Q ss_pred ------CCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC------CC---------------Cceeee
Q 048178 253 ------ESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG------PF---------------IGIFQP 304 (376)
Q Consensus 253 ------~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~------~~---------------~~~~~~ 304 (376)
....-..+... +|.+.+.... +..+.||.+... ..+..+. .. ..-..-
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~ 359 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGW--DGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 359 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEET--TSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeC--CCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeE
Confidence 11011233333 4555555544 789999999873 3444442 11 222344
Q ss_pred EEEeeCC----------cEEEE-EcCCeEEEEeCCCCc
Q 048178 305 LLFWKKG----------AFFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 305 ~~~~~~g----------~i~~~-~~~~~~~~yd~~t~~ 331 (376)
+++.++| .+++. ..++.+.+||+++++
T Consensus 360 ~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 360 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 5666676 55554 668889999988764
No 140
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=65.22 E-value=45 Score=32.74 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=62.8
Q ss_pred CCeEEECceEEEEeeecCCCCccEEEEEECCCce--EeeecCCCCC-------CCCCceeEEEecCeEEEEEecCCCCEE
Q 048178 209 SERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQEIQGPCTL-------ESSLDVTLGIYDQSLSLLLLDTVDHCF 279 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~i~lP~~~-------~~~~~~~l~~~~g~L~l~~~~~~~~~l 279 (376)
..++..+|.+|.....+ .+.++|.++.+ |+. ..+... .......++..+|++++... +..+
T Consensus 71 ~~P~v~~g~vyv~~~~~------~v~AlD~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---dg~l 140 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASWS------VVHAIDTRTGNRIWTY-DPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---DGRL 140 (677)
T ss_dssp CCCEEETTEEEEECGGG------CEEEEETTTTEEEEEE-CCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---TSEE
T ss_pred eCCEEECCEEEEECCCC------eEEEEECCCCcEEEEE-cCCCCccccccccccCCCCCceEECCEEEEEcC---CCEE
Confidence 35678999999776533 79999988754 543 222111 00011345556777766543 3455
Q ss_pred EEEEeCC--CceeeEEEECC---CCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEE
Q 048178 280 KIWVMQK--KNWIKQSSVGP---FIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELR 333 (376)
Q Consensus 280 ~vW~l~~--~~W~~~~~i~~---~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~ 333 (376)
..+..+. ..|......+. ......|+. .++.+|+... .+.+..||.+|++..
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 5555544 44765421000 111133432 2566766543 477999999998755
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=64.48 E-value=67 Score=27.41 Aligned_cols=142 Identities=8% Similarity=0.045 Sum_probs=71.9
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCC--CCC
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLE--SSL 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~--~~~ 256 (376)
...+.+++..++.....-..+... ....+. -+|...++.... ...|..+|+.+.+.. .+.++.... ...
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~~~v~~~~----~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~ 93 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKF--GPGTAMMAPDNRTAYVLNNH----YGDIYGIDLDTCKNTFHANLSSVPGEVGRS 93 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCC--SSCEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred CCeEEEEECCCCcEEEEEecCCCC--CCceeEECCCCCEEEEEeCC----CCcEEEEeCCCCcEEEEEEccccccccccc
Confidence 457888998887543211111100 112333 357644444433 347999999887654 445543210 000
Q ss_pred ceeEEEe-cCe-EEEEEec---------CCCCEEEEEEeCCC---ceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeE
Q 048178 257 DVTLGIY-DQS-LSLLLLD---------TVDHCFKIWVMQKK---NWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQL 322 (376)
Q Consensus 257 ~~~l~~~-~g~-L~l~~~~---------~~~~~l~vW~l~~~---~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~ 322 (376)
...+... +|+ |++.... .....+.+|.++.+ .-...... +.. ..-+++.++|++++. . ..+
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~--~~~~~~s~dg~l~~~-~-~~i 168 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQ--VYLMRAADDGSLYVA-G-PDI 168 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSS--CCCEEECTTSCEEEE-S-SSE
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCc--ccceeECCCCcEEEc-c-CcE
Confidence 1223333 555 4444421 11368888888761 11122222 221 233456678885553 3 339
Q ss_pred EEEeCCCCcEEE
Q 048178 323 LLYEPGTGELRD 334 (376)
Q Consensus 323 ~~yd~~t~~~~~ 334 (376)
..+|+++++...
T Consensus 169 ~~~d~~~~~~~~ 180 (349)
T 1jmx_B 169 YKMDVKTGKYTV 180 (349)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEeCCCCceec
Confidence 999999887554
No 142
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=64.18 E-value=63 Score=31.75 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=63.2
Q ss_pred CeEEECceEEEEeeecCCCCccEEEEEECCCc--eEeee-cCCCCCC-----CCCceeEEEecCeEEEEEecCCCCEEEE
Q 048178 210 ERTYFDGAFYWLLKLENDNDNYVILSFHMAEE--KFQEI-QGPCTLE-----SSLDVTLGIYDQSLSLLLLDTVDHCFKI 281 (376)
Q Consensus 210 ~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e--~~~~i-~lP~~~~-----~~~~~~l~~~~g~L~l~~~~~~~~~l~v 281 (376)
.++..+|.+|.....+ .+.++|.++. .|+.- ..+.... ......+++.+|.+++... ...+..
T Consensus 65 ~P~v~~g~vyv~~~~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg~l~A 135 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPFS------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DGRLEA 135 (689)
T ss_dssp CCEEETTEEEEECGGG------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEEE
T ss_pred cCEEECCEEEEEcCCC------eEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---CCEEEE
Confidence 5678899999866533 6999998754 56542 2221100 0011234566777766543 455555
Q ss_pred EEeCC--CceeeEEEECCC---CceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEE
Q 048178 282 WVMQK--KNWIKQSSVGPF---IGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELR 333 (376)
Q Consensus 282 W~l~~--~~W~~~~~i~~~---~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~ 333 (376)
+..+. ..|......++. .....|+. .+|.+++... .+.++.||.+|++..
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEE--ECCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 55544 457765431111 11133433 2566766532 467999999998754
No 143
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=62.72 E-value=75 Score=27.40 Aligned_cols=188 Identities=11% Similarity=0.078 Sum_probs=93.3
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCC--ceEe
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTN--SWRN 197 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~--~W~~ 197 (376)
.++++|+.|++....-... .. ....++.+|+..+ ++.. . .....+.+|+..+. .=..
T Consensus 70 ~i~~~d~~~g~~~~~~~~~-----~~---~~p~gia~d~~g~---l~v~-d---------~~~~~v~~~~~~g~~~~~~~ 128 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKN-----LF---YLPHGLSIDTDGN---YWVT-D---------VALHQVFKLDPHSKEGPLLI 128 (329)
T ss_dssp CEEEECTTTCCEEEEECTT-----TC---SSEEEEEECTTSC---EEEE-E---------TTTTEEEEECTTCSSCCSEE
T ss_pred cEEEEECCCCeEEeccCCC-----cc---CCceEEEECCCCC---EEEE-E---------CCCCEEEEEeCCCCeEEEEE
Confidence 6899999988865422110 00 0135777786543 2222 1 22457788887654 1122
Q ss_pred ccccC--c---cccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCC------CCCCceeEEEe
Q 048178 198 LKSID--Y---TMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTL------ESSLDVTLGIY 263 (376)
Q Consensus 198 ~~~~~--~---~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~------~~~~~~~l~~~ 263 (376)
+.... . .......++.+ +|.+|+..... ...|..||........+..+... .......++.-
T Consensus 129 ~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d 204 (329)
T 3fvz_A 129 LGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV 204 (329)
T ss_dssp ESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE
T ss_pred ecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE
Confidence 22110 0 00011234554 57888766322 34899999766555554322111 01112345554
Q ss_pred -c-CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee------CCcEEEEE-cCCeEEEEeCCCCcEEE
Q 048178 264 -D-QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK------KGAFFVES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 264 -~-g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~------~g~i~~~~-~~~~~~~yd~~t~~~~~ 334 (376)
+ |.|+++... ...+.+|..+.++............-..-+++.+ +|.+++.. ....+..+|+.++++..
T Consensus 205 ~~~g~l~v~d~~--~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 205 PHLDQLCVADRE--NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp TTTTEEEEEETT--TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred CCCCEEEEEECC--CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 3 678887764 7789999988544444332211111111122222 33333322 23468899988776554
No 144
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=62.60 E-value=82 Score=27.76 Aligned_cols=193 Identities=12% Similarity=0.043 Sum_probs=101.4
Q ss_pred eecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
..+|.|...+. ...++.+++.++....+....... ..++.+|+..+. |... . .....+
T Consensus 82 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~---------p~glavd~~~g~--ly~~------d----~~~~~I 140 (349)
T 3v64_C 82 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES---------PGGLAVDWVHDK--LYWT------D----SGTSRI 140 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTE--EEEE------E----TTTTEE
T ss_pred ccccEEEEEeccCCceEEEecCCCCceEEEeCCCCC---------ccEEEEecCCCe--EEEE------c----CCCCeE
Confidence 45677776654 456778888776544432211110 246777765543 2221 1 224578
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
++++..+..-+.+... .+. ...++.+ +|.+||..... ...|..+|+....-..+- ..... ....|+.
T Consensus 141 ~~~~~dG~~~~~l~~~--~l~-~P~~iavdp~~g~ly~td~~~----~~~I~r~~~dG~~~~~~~-~~~~~--~PnGla~ 210 (349)
T 3v64_C 141 EVANLDGAHRKVLLWQ--SLE-KPRAIALHPMEGTIYWTDWGN----TPRIEASSMDGSGRRIIA-DTHLF--WPNGLTI 210 (349)
T ss_dssp EEEETTSCSCEEEECT--TCS-CEEEEEEETTTTEEEEEECSS----SCEEEEEETTSCSCEESC-CSSCS--CEEEEEE
T ss_pred EEEcCCCCceEEEEeC--CCC-CcceEEEecCcCeEEEeccCC----CCEEEEEeCCCCCcEEEE-ECCCC--CcceEEE
Confidence 8888776543332211 111 1123333 58999986542 258999998764333321 11111 1234555
Q ss_pred e--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe-eCCcEEEEEc-CCeEEEEeC-CCCcEEEEE
Q 048178 263 Y--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW-KKGAFFVESN-SSQLLLYEP-GTGELRDFE 336 (376)
Q Consensus 263 ~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~g~i~~~~~-~~~~~~yd~-~t~~~~~v~ 336 (376)
- +|.|+++... ...+....++.. -.+. .+ ... +..|.++. .++.+|+... .+.+..+|. ..+..+.+.
T Consensus 211 d~~~~~lY~aD~~--~~~I~~~~~dG~-~~~~-~~-~~~-~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 211 DYAGRRMYWVDAK--HHVIERANLDGS-HRKA-VI-SQG-LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETT--TTEEEEEETTSC-SCEE-EE-CSS-CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCEEEEEECC--CCEEEEEeCCCC-ceEE-EE-eCC-CCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 3 6678888764 566766666642 1111 12 111 34555554 3566777754 577999995 444455554
No 145
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=61.57 E-value=73 Score=26.85 Aligned_cols=65 Identities=0% Similarity=-0.059 Sum_probs=38.7
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC----cEEEE-EcCCeEEEEeCCCCc
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG----AFFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g----~i~~~-~~~~~~~~yd~~t~~ 331 (376)
+.+.++... ...+.+|.........+..+.....-..-+++.+++ .+++. ..++.+..||++++.
T Consensus 182 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 182 PEKLAVSAL--EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp CCEEEEEET--TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred CcEEEEecC--CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 555555553 455656665556666666652222224445666666 55554 567789999998753
No 146
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=60.87 E-value=79 Score=27.00 Aligned_cols=134 Identities=13% Similarity=0.026 Sum_probs=76.2
Q ss_pred eEEEEEcCCCce-EeccccCccccCCCCeE-EECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeE
Q 048178 184 LVTVYNLSTNSW-RNLKSIDYTMRLSSERT-YFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTL 260 (376)
Q Consensus 184 ~~~vyss~t~~W-~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l 260 (376)
.+.+++.+|++= +.+ ++.. .. ..++ ..++.+|-+... ...+.+||.++.+- ..++.+... ..|
T Consensus 76 ~v~~iD~~Tgkv~~~~--l~~~-~F-geGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl~~~~ti~~~~eG-----wGL 141 (268)
T 3nok_A 76 TLRQLSLESAQPVWME--RLGN-IF-AEGLASDGERLYQLTWT-----EGLLFTWSGMPPQRERTTRYSGEG-----WGL 141 (268)
T ss_dssp EEEECCSSCSSCSEEE--ECTT-CC-EEEEEECSSCEEEEESS-----SCEEEEEETTTTEEEEEEECSSCC-----CCE
T ss_pred EEEEEECCCCcEEeEE--CCCC-cc-eeEEEEeCCEEEEEEcc-----CCEEEEEECCcCcEEEEEeCCCce-----eEE
Confidence 388888888742 222 2211 11 1233 446678877654 34899999988554 556665321 234
Q ss_pred EEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee------EEEeeCCcEEEEE-cCCeEEEEeCCCCcEE
Q 048178 261 GIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP------LLFWKKGAFFVES-NSSQLLLYEPGTGELR 333 (376)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~------~~~~~~g~i~~~~-~~~~~~~yd~~t~~~~ 333 (376)
+.-++.|++... +. .|+.++...=..+.+| +...-..+ +. +.+|+||... ....+...|++|++..
T Consensus 142 t~Dg~~L~vSdG---s~--~l~~iDp~T~~v~~~I-~V~~~g~~v~~lNeLe-~~dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 142 CYWNGKLVRSDG---GT--MLTFHEPDGFALVGAV-QVKLRGQPVELINELE-CANGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp EEETTEEEEECS---SS--EEEEECTTTCCEEEEE-ECEETTEECCCEEEEE-EETTEEEEEETTCSEEEEECTTTCBEE
T ss_pred ecCCCEEEEECC---CC--EEEEEcCCCCeEEEEE-EeCCCCcccccccccE-EeCCEEEEEECCCCeEEEEeCCCCcEE
Confidence 444555776653 33 5666665333444555 22211111 22 2378888765 4678999999999764
Q ss_pred -EEEEe
Q 048178 334 -DFELE 338 (376)
Q Consensus 334 -~v~~~ 338 (376)
++...
T Consensus 215 ~~Idl~ 220 (268)
T 3nok_A 215 GVIDAS 220 (268)
T ss_dssp EEEECH
T ss_pred EEEECC
Confidence 56654
No 147
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=60.87 E-value=97 Score=28.03 Aligned_cols=142 Identities=7% Similarity=0.007 Sum_probs=73.5
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE-CceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCC--------
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF-DGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCT-------- 251 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~-------- 251 (376)
...+.+|+..++.-...- .. .......++.+ +|.+...+.. ...|..+|+.+.+. ..+.....
T Consensus 219 d~~i~vwd~~~~~~~~~~-~~-~h~~~v~~~~~sd~~~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 219 DEHIKISHYPQCFIVDKW-LF-GHKHFVSSICCGKDYLLLSAGG-----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp TSCEEEEEESCTTCEEEE-CC-CCSSCEEEEEECSTTEEEEEES-----SSEEEEEETTTCCEEEEEECHHHHGGGCCTT
T ss_pred CCcEEEEECCCCceeeee-ec-CCCCceEEEEECCCCEEEEEeC-----CCeEEEEECCCCcEeeeecchhhhhhhhhhc
Confidence 457888888776432110 00 00011122323 6665554443 34799999987653 33332110
Q ss_pred -------------CCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEe--CC-CceeeEEEECCCCceeeeEEEeeCCcEE
Q 048178 252 -------------LESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVM--QK-KNWIKQSSVGPFIGIFQPLLFWKKGAFF 314 (376)
Q Consensus 252 -------------~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l--~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~ 314 (376)
.....-..+... +|+..++.. .....+.||.+ .. ..+..+..+ ....-..-+++.+ +.++
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~~d~~i~iw~~~~~~~~~l~~~~~~-~~~~~v~~~~~~~-~~~~ 368 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV-EATKCIIILEMSEKQKGDLALKQII-TFPYNVISLSAHN-DEFQ 368 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEE-TTCSEEEEEEECSSSTTCEEEEEEE-ECSSCEEEEEEET-TEEE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEE-CCCCeEEEEEeccCCCCceeeccEe-ccCCceEEEEecC-CcEE
Confidence 000011223333 455555554 23789999999 33 566777777 3432233345554 4555
Q ss_pred EEEcC----C------eEEEEeCCCCcEE
Q 048178 315 VESNS----S------QLLLYEPGTGELR 333 (376)
Q Consensus 315 ~~~~~----~------~~~~yd~~t~~~~ 333 (376)
+.... + .++.++.++++++
T Consensus 369 v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 369 VTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 55322 1 6888888888886
No 148
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=60.83 E-value=85 Score=27.39 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=49.9
Q ss_pred cEEEEEECCCceEee-ecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEEC-----------
Q 048178 231 YVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVG----------- 296 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~----------- 296 (376)
..|..+|+.+..... +.... . .-..+... +|. +.+.... +..+.+|.+....= ....+.
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~--~--~v~~~~~~~~~~~ll~~~~~--dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHR--Q--EILAVSWSPRYDYILATASA--DSRVKLWDVRRASG-CLITLDQHNGKKSQAVE 238 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCC--S--CEEEEEECSSCTTEEEEEET--TSCEEEEETTCSSC-CSEECCTTTTCSCCCTT
T ss_pred CeEEEEeCCCcceeeeecCCC--C--cEEEEEECCCCCcEEEEEcC--CCcEEEEECCCCCc-ccccccccccccceeec
Confidence 368888887654322 22110 0 11233333 444 5555544 67899999876110 001110
Q ss_pred ----CCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcE
Q 048178 297 ----PFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 297 ----~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~ 332 (376)
.......-+++.++|..++ ...++.+..||+++++.
T Consensus 239 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 0111133455566777555 45677899999998654
No 149
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=60.51 E-value=1.2e+02 Score=28.98 Aligned_cols=197 Identities=10% Similarity=-0.039 Sum_probs=103.1
Q ss_pred cceEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 109 CGIVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 109 ~Gll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
++++.+... ...+.|+|+.|++... +|.... ..++.+++. +.|-.+. . ....+.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~-----------p~~v~~SpD-Gr~lyv~--~----------~dg~V~ 221 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-----------VHISRLSAS-GRYLFVI--G----------RDGKVN 221 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC-----------EEEEEECTT-SCEEEEE--E----------TTSEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC-----------ccceEECCC-CCEEEEE--c----------CCCeEE
Confidence 456655543 6788999999988653 443211 124555543 3443332 1 133788
Q ss_pred EEEcCCCceEeccccCccccCCCCeEEE------CceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCC-----
Q 048178 187 VYNLSTNSWRNLKSIDYTMRLSSERTYF------DGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLES----- 254 (376)
Q Consensus 187 vyss~t~~W~~~~~~~~~~~~~~~~v~~------~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~----- 254 (376)
+|+..+.+-+.+...+... ...++.+ +|..-+++... ...+.++|..+.+- ..++.......
T Consensus 222 viD~~~~t~~~v~~i~~G~--~P~~ia~s~~~~pDGk~l~v~n~~----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~ 295 (567)
T 1qks_A 222 MIDLWMKEPTTVAEIKIGS--EARSIETSKMEGWEDKYAIAGAYW----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 295 (567)
T ss_dssp EEETTSSSCCEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEE----TTEEEEEETTTCCEEEEEECCEECTTTCCEE
T ss_pred EEECCCCCCcEeEEEecCC--CCceeEEccccCCCCCEEEEEEcc----CCeEEEEECCCCcEEEEEecccccccccccc
Confidence 8888522223222221111 1123322 57655555443 44788999877543 34454321100
Q ss_pred -C-CceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-E-cCCeEEEEeCCC
Q 048178 255 -S-LDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-S-NSSQLLLYEPGT 329 (376)
Q Consensus 255 -~-~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~-~~~~~~~yd~~t 329 (376)
. .-..+... ++..+++.. .....+.+....+....++..+ +........++..+|+.++. . ..+++.++|.++
T Consensus 296 p~~rva~i~~s~~~~~~vv~~-~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 296 PEPRVAAILASHYRPEFIVNV-KETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp SCCCEEEEEECSSSSEEEEEE-TTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred CCCceEEEEEcCCCCEEEEEe-cCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0 01122222 334555554 3355555555555455566666 34434556777778885544 3 467899999999
Q ss_pred CcEEE-EEE
Q 048178 330 GELRD-FEL 337 (376)
Q Consensus 330 ~~~~~-v~~ 337 (376)
+++.. +..
T Consensus 374 ~kl~~~i~v 382 (567)
T 1qks_A 374 GKLVAIEDT 382 (567)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEec
Confidence 98764 444
No 150
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=60.30 E-value=84 Score=27.14 Aligned_cols=183 Identities=14% Similarity=0.094 Sum_probs=91.9
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+.+|.++....+..+.|||..+++....-.. .... ...+.+.|.. .+ ++.. .....+.
T Consensus 152 ~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~----h~~~-----v~~~~~~~~~-~~-l~sg-----------~~d~~v~ 209 (340)
T 1got_B 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTG----HTGD-----VMSLSLAPDT-RL-FVSG-----------ACDASAK 209 (340)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEEEEECC----CSSC-----EEEEEECTTS-SE-EEEE-----------ETTSCEE
T ss_pred CCCCcEEEEECCCcEEEEECCCCcEEEEEcC----CCCc-----eEEEEECCCC-CE-EEEE-----------eCCCcEE
Confidence 3456666666677889999998875442111 1111 2355555532 22 2221 1245788
Q ss_pred EEEcCCCceEe-ccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 187 VYNLSTNSWRN-LKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 187 vyss~t~~W~~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
+++.+++.-.. ..... ....++.+ +|.....+.. ...|..+|+.+.+-.. +..+..... -..+.-
T Consensus 210 ~wd~~~~~~~~~~~~h~----~~v~~v~~~p~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~~~~~~~~--v~~~~~ 278 (340)
T 1got_B 210 LWDVREGMCRQTFTGHE----SDINAICFFPNGNAFATGSD-----DATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278 (340)
T ss_dssp EEETTTCSEEEEECCCS----SCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCTTCCSC--EEEEEE
T ss_pred EEECCCCeeEEEEcCCc----CCEEEEEEcCCCCEEEEEcC-----CCcEEEEECCCCcEEEEEccCCcccc--eEEEEE
Confidence 88887764221 11110 01112333 4544433332 2368889988765322 222211110 122222
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEe
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYE 326 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd 326 (376)
. +|.+.+.+.. +..+.||.+.. ...+..+.....-..-+++.++|..++. ..++.+..||
T Consensus 279 s~~g~~l~~g~~--d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYD--DFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEET--TSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECC--CCeEEEEEccc--CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2 5666666655 78999999876 3344444222222344566667776655 4566676664
No 151
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=60.01 E-value=1.1e+02 Score=28.19 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=46.4
Q ss_pred CeEEEEEecCC-----CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-E-cCCeEEEEeCCCCcEE
Q 048178 265 QSLSLLLLDTV-----DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-S-NSSQLLLYEPGTGELR 333 (376)
Q Consensus 265 g~L~l~~~~~~-----~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~-~~~~~~~yd~~t~~~~ 333 (376)
++||+...... ...=.||+.+-..+..+.+| +......-+++..+|+ .++. . ..+.+.++|.+|.+..
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I-~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI-ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEE-ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 45887765211 12457888888788888888 6654333356677887 5554 4 3688999999999765
No 152
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=59.39 E-value=87 Score=27.03 Aligned_cols=205 Identities=7% Similarity=0.017 Sum_probs=102.4
Q ss_pred cceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+|.++..+ ....++++||.+++...++.+. . ..++.+++.. .+ ++.. ...+.+
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-----~------v~~i~~~~dg-~l-~v~~-------------~~gl~~ 113 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKTVHALPF-----M------GSALAKISDS-KQ-LIAS-------------DDGLFL 113 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEEEEECSS-----C------EEEEEEEETT-EE-EEEE-------------TTEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEECCC-----c------ceEEEEeCCC-eE-EEEE-------------CCCEEE
Confidence 45554444 3567899999998766543211 1 2345555432 21 2221 124778
Q ss_pred EEcCCCceEeccccCcccc-CCCCeEEE--CceEEEEeeecCC--CCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 188 YNLSTNSWRNLKSIDYTMR-LSSERTYF--DGAFYWLLKLEND--NDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lywl~~~~~~--~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
|+..++..+.+........ .....+.+ +|.+|. +..... .....|..+| +.+...+.- ... ....++.
T Consensus 114 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v-~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~--~~~~i~~ 186 (326)
T 2ghs_A 114 RDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWI-GTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS--IPNSICF 186 (326)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEE-EEEETTCCTTCEEEEEEE--TTEEEEEEE--EES--SEEEEEE
T ss_pred EECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEE-EeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc--ccCCeEE
Confidence 8888888776543211111 00112222 577654 432210 0134788888 455544310 000 1123333
Q ss_pred e-cCe-EEEEEecCCCCEEEEEEeC--CC-ceee---EEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCcEE
Q 048178 263 Y-DQS-LSLLLLDTVDHCFKIWVMQ--KK-NWIK---QSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGELR 333 (376)
Q Consensus 263 ~-~g~-L~l~~~~~~~~~l~vW~l~--~~-~W~~---~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~~~ 333 (376)
. +|+ |++.... ...+.+|.++ ++ .... ...+........-+++..+|.+++.. ..+.+..||++++..+
T Consensus 187 s~dg~~lyv~~~~--~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~ 264 (326)
T 2ghs_A 187 SPDGTTGYFVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIA 264 (326)
T ss_dssp CTTSCEEEEEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEE
T ss_pred cCCCCEEEEEECC--CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEE
Confidence 3 554 6655433 5677777775 23 3221 12221111122224445578888875 4578999999777777
Q ss_pred EEEEecceEEEEEee
Q 048178 334 DFELECCWFSIYIYT 348 (376)
Q Consensus 334 ~v~~~~~~~~~~~y~ 348 (376)
.+......+..+.+-
T Consensus 265 ~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEECSCSBEEEEEEE
T ss_pred EEECCCCCcEEEEEe
Confidence 776544334444443
No 153
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=59.05 E-value=94 Score=28.43 Aligned_cols=110 Identities=11% Similarity=0.151 Sum_probs=62.5
Q ss_pred CeEEEC-----ceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ecCeEEEEEecC-CCCEEEEE
Q 048178 210 ERTYFD-----GAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YDQSLSLLLLDT-VDHCFKIW 282 (376)
Q Consensus 210 ~~v~~~-----G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~g~L~l~~~~~-~~~~l~vW 282 (376)
.++.++ |.|||.... ..|..+|+++.+...+..+.. ....++. -+|.|++..... ....-.++
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~------~~I~~id~~~g~v~~~~~~~~----~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQR------DAFRHVDFVNQYVDIKTTNIG----QCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CEEEECTTTTTCEEEEECBT------SCEEEEETTTTEEEEECCCCS----CEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred ceEEEccccCCCEEEEEeCC------CCEEEEECCCCEEEEeecCCC----CccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 467776 889987653 379999998888776632111 1123444 366677777621 11222333
Q ss_pred EeCCCceeeEEEECCCCceeee--EEEee-CCcEEEEEc-CCeEEEEeCCCCcE
Q 048178 283 VMQKKNWIKQSSVGPFIGIFQP--LLFWK-KGAFFVESN-SSQLLLYEPGTGEL 332 (376)
Q Consensus 283 ~l~~~~W~~~~~i~~~~~~~~~--~~~~~-~g~i~~~~~-~~~~~~yd~~t~~~ 332 (376)
...+..|.....+ + .+..| +++.. +|.||+... .+.+..||+++++.
T Consensus 212 ~~~~~~~~~~~~~-~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 212 FTRASGFTERLSL-C--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp ECGGGTTCCEEEE-E--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred EECCCCeeccccc-c--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 3333444322222 1 12223 45555 678888754 56799999987776
No 154
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=58.98 E-value=87 Score=26.90 Aligned_cols=183 Identities=16% Similarity=0.219 Sum_probs=92.7
Q ss_pred EEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcC
Q 048178 113 FIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLS 191 (376)
Q Consensus 113 ~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~ 191 (376)
+....+..+.|||..+++... +...+.. ...+.+.|.. .+- +.. .....+.+|+.+
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~----------~~~~~~spdg-~~l--~~g----------~~dg~v~i~~~~ 152 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVD----------AWTLAFSPDS-QYL--ATG----------THVGKVNIFGVE 152 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTC----------CCCEEECTTS-SEE--EEE----------CTTSEEEEEETT
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCcc----------EEEEEECCCC-CEE--EEE----------cCCCcEEEEEcC
Confidence 333447788999998877543 2221111 1234444432 222 211 124577888887
Q ss_pred CCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEe-cCeE
Q 048178 192 TNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIY-DQSL 267 (376)
Q Consensus 192 t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~-~g~L 267 (376)
++.=...-.... ....++.+ +|.+...+.. ...|..+|+++.+... +..... .-..+... +|.+
T Consensus 153 ~~~~~~~~~~~~---~~v~~~~~spdg~~lasg~~-----dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~spd~~~ 220 (321)
T 3ow8_A 153 SGKKEYSLDTRG---KFILSIAYSPDGKYLASGAI-----DGIINIFDIATGKLLHTLEGHAM----PIRSLTFSPDSQL 220 (321)
T ss_dssp TCSEEEEEECSS---SCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSS----CCCEEEECTTSCE
T ss_pred CCceeEEecCCC---ceEEEEEECCCCCEEEEEcC-----CCeEEEEECCCCcEEEEEcccCC----ceeEEEEcCCCCE
Confidence 764221100000 00012222 4544333332 2368889998775432 221111 11233333 5555
Q ss_pred EEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 268 SLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 268 ~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
.+.... +..+.||.++..+ ....+........-+++.++|..++. ..++.+.+||+++++...
T Consensus 221 l~s~s~--dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 221 LVTASD--DGYIKIYDVQHAN--LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp EEEECT--TSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEcC--CCeEEEEECCCcc--eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 544444 7889999988733 33444222222344566777876655 567789999999886443
No 155
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=58.77 E-value=1e+02 Score=27.76 Aligned_cols=198 Identities=12% Similarity=0.009 Sum_probs=101.2
Q ss_pred eecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-|.+.+. ...+.++|+.+++...+...... .. +.+++..+ .++... . .....+
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~----------~~-ia~~~~g~--~l~~~d-----~----~~~~~I 196 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG----------GK-PAVTKDKQ--RVYSIG-----W----EGTHTV 196 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB----------CB-CEECTTSS--EEEEEB-----S----STTCEE
T ss_pred eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC----------Cc-eeEecCCC--cEEEEe-----c----CCCceE
Confidence 45677766655 56889999998887665433111 12 44554433 222211 0 012267
Q ss_pred EEEEcCCCc-eEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCc-e-
Q 048178 186 TVYNLSTNS-WRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLD-V- 258 (376)
Q Consensus 186 ~vyss~t~~-W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~-~- 258 (376)
.+++..++. .+.+............++.+ +|.+|+ +.. ...|..+|.++.....+ ..+........ .
T Consensus 197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~-----~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDS-----NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECT-----TCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred EEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EEC-----CCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 777766542 33331111101111123333 688998 322 23799999987765554 11111111112 2
Q ss_pred eEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECC-C----------Cceeee--EEEeeCCcEEEEEc--CCe
Q 048178 259 TLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGP-F----------IGIFQP--LLFWKKGAFFVESN--SSQ 321 (376)
Q Consensus 259 ~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~-~----------~~~~~~--~~~~~~g~i~~~~~--~~~ 321 (376)
.++.. +|.|++.... ...+.+|..+ ..-..+..- . . ..+..| +++.++|.+|+... ..+
T Consensus 271 ~ia~~p~~g~lyv~d~~--~~~I~~~~~~-g~~~~~~g~-~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQN--LSSVYKITPD-GECEWFCGS-ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEECTT-CCEEEEEEC-TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred cEEEeCCCCEEEEEeCC--CCEEEEEecC-CCEEEEEeC-CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 55554 4678877653 4555555443 222222111 1 0 012234 44456788888854 577
Q ss_pred EEEEeCCCCcEEEEE
Q 048178 322 LLLYEPGTGELRDFE 336 (376)
Q Consensus 322 ~~~yd~~t~~~~~v~ 336 (376)
+..+|+.++++..+.
T Consensus 347 I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 347 LRKLDILDGYVSTVA 361 (409)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEe
Confidence 999998888777654
No 156
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=58.72 E-value=86 Score=26.79 Aligned_cols=70 Identities=7% Similarity=0.059 Sum_probs=44.2
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEEE
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~v~ 336 (376)
|.+.+.... +..+.||.++.........+.....-..-+++..++..++. ..++.+..||+++++...+.
T Consensus 54 g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 124 (368)
T 3mmy_A 54 GNFLIAGSW--ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA 124 (368)
T ss_dssp SEEEEEEET--TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEEECC--CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec
Confidence 455555544 68899999987334433333112222344566667775554 56788999999999876653
No 157
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=58.72 E-value=93 Score=27.16 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=55.9
Q ss_pred ccEEEEEECCCceEe-eecCCCCC---CCCCceeEEEe-cCeEEEEEec-CCCCEEEEEEeCCCceeeEEEECC------
Q 048178 230 NYVILSFHMAEEKFQ-EIQGPCTL---ESSLDVTLGIY-DQSLSLLLLD-TVDHCFKIWVMQKKNWIKQSSVGP------ 297 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~-~i~lP~~~---~~~~~~~l~~~-~g~L~l~~~~-~~~~~l~vW~l~~~~W~~~~~i~~------ 297 (376)
...|..+|+.+.+.. .+..+... .. .-..+... +|.+.++... .....+.+|.+... ..+..+..
T Consensus 206 dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 206 NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQ 282 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC-----
T ss_pred CCcEEEEECCCCceeEEEeccccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCC--cccceeccCccccc
Confidence 348999999876543 33431001 11 11233332 5565555543 11178999998873 33344421
Q ss_pred -------CCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 298 -------FIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 298 -------~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
...-..-+++.++|..++. ..++.+.+||+++++..
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 1222344566667776655 56788999999988543
No 158
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=58.04 E-value=1.5e+02 Score=29.37 Aligned_cols=202 Identities=13% Similarity=0.180 Sum_probs=107.6
Q ss_pred eeeeecceEEEeecCCeEEEEecCccceeecCCCCC---CCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCC
Q 048178 104 FKGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRA---IIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 104 ~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~---~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 180 (376)
+....+|-+.+.....-++.+||.++++........ ...... ...+..|.... +.+..
T Consensus 220 i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~-----i~~i~~d~~g~----lWigt---------- 280 (795)
T 4a2l_A 220 ILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNY-----IRSLAMDSQNR----LWIGT---------- 280 (795)
T ss_dssp EEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSB-----EEEEEECTTSC----EEEEE----------
T ss_pred EEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCe-----EEEEEEcCCCC----EEEEe----------
Confidence 344456777666654457899999988777654321 111111 22444453321 23322
Q ss_pred CcceEEEEEcCCCceEeccccCc---ccc-CCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecC-CCCCC
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDY---TMR-LSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQG-PCTLE 253 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~---~~~-~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~l-P~~~~ 253 (376)
.. .+.+|+..++.++.....+. .+. ....+++. +|. .|++..+ ..|..+|..+..|..+.. |....
T Consensus 281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~-----~Gl~~~~~~~~~~~~~~~~~~~~~ 353 (795)
T 4a2l_A 281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF-----GGLNYYHPIRNRFKNIRNIPYKNS 353 (795)
T ss_dssp SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS-----SCEEEECGGGGSSEEECCCTTSSS
T ss_pred CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC-----CCeEEeCCCcccceEEcCCCCCCC
Confidence 12 67788888888876643221 111 11123333 344 4666643 268899998888877643 22111
Q ss_pred --CCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEE--------ECCCCceeeeEEEeeCCc-EEEEEcCCe
Q 048178 254 --SSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSS--------VGPFIGIFQPLLFWKKGA-FFVESNSSQ 321 (376)
Q Consensus 254 --~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~--------i~~~~~~~~~~~~~~~g~-i~~~~~~~~ 321 (376)
...-..+.+- +|.|.+-.. ...+..|..+...+..... + +.. ...-++...+|. |++....+.
T Consensus 354 l~~~~V~~i~~d~~g~lWiGt~---~~Gl~~~~~~~~~~~~~~~~~~~~~~~l-~~~-~v~~i~~d~~g~~lWigt~~~G 428 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWIGTN---DGGLNLYNPITQRFTSYTLQEDESARGI-GSN-NIKAVYVDEKKSLVYIGTHAGG 428 (795)
T ss_dssp CSCSSEEEEEECTTSCEEEEES---SSCEEEECTTTCCEEEECCC------CC-SCS-CEEEEEEETTTTEEEEEETTTE
T ss_pred CCCCeeEEEEECCCCCEEEEEC---CCCeEEEcCCCCcEEEEecCCCCcccCC-CCc-cEEEEEEcCCCCEEEEEeCcCc
Confidence 1111233333 455666443 2345555444444544321 1 111 122334345788 888887778
Q ss_pred EEEEeCCCCcEEEEE
Q 048178 322 LLLYEPGTGELRDFE 336 (376)
Q Consensus 322 ~~~yd~~t~~~~~v~ 336 (376)
++.||+++++++.+.
T Consensus 429 l~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 429 LSILHRNSGQVENFN 443 (795)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred eeEEeCCCCcEEEee
Confidence 999999998887653
No 159
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=57.98 E-value=80 Score=26.15 Aligned_cols=195 Identities=13% Similarity=0.149 Sum_probs=99.5
Q ss_pred eeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 106 GLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 106 ~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+..+|.|...+. ...+.++++.++....+-.... . ...++.+|+..+. +... . .....
T Consensus 44 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---~------~p~~ia~d~~~~~--lyv~-d---------~~~~~ 102 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---G------SPEGIALDHLGRT--IFWT-D---------SQLDR 102 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---C------CEEEEEEETTTTE--EEEE-E---------TTTTE
T ss_pred ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC---C------CccEEEEEecCCe--EEEE-E---------CCCCE
Confidence 344677766654 4578888887765333211110 0 1246777765442 2111 1 12457
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
+.+++..+..-+.+... .. ....++.+ +|.+||...... ...|..+++.......+.- .... ....++
T Consensus 103 I~~~~~~g~~~~~~~~~--~~-~~P~~i~vd~~~g~lyv~~~~~~---~~~I~~~~~dg~~~~~~~~-~~~~--~P~gia 173 (267)
T 1npe_A 103 IEVAKMDGTQRRVLFDT--GL-VNPRGIVTDPVRGNLYWTDWNRD---NPKIETSHMDGTNRRILAQ-DNLG--LPNGLT 173 (267)
T ss_dssp EEEEETTSCSCEEEECS--SC-SSEEEEEEETTTTEEEEEECCSS---SCEEEEEETTSCCCEEEEC-TTCS--CEEEEE
T ss_pred EEEEEcCCCCEEEEEEC--CC-CCccEEEEeeCCCEEEEEECCCC---CcEEEEEecCCCCcEEEEE-CCCC--CCcEEE
Confidence 77888765433332111 11 11124444 588999764321 2378888876544333311 1111 123444
Q ss_pred Ee--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEEEc-CCeEEEEeCCCCc-EEEEE
Q 048178 262 IY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVESN-SSQLLLYEPGTGE-LRDFE 336 (376)
Q Consensus 262 ~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~-~~~~~~yd~~t~~-~~~v~ 336 (376)
.- ++.|++.... ...+.+..++.. .....+ + ....|.++.. ++.+|+... .+.+..+|+++++ .+.+.
T Consensus 174 ~d~~~~~lyv~d~~--~~~I~~~~~~g~--~~~~~~-~--~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 174 FDAFSSQLCWVDAG--THRAECLNPAQP--GRRKVL-E--GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EETTTTEEEEEETT--TTEEEEEETTEE--EEEEEE-E--CCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EcCCCCEEEEEECC--CCEEEEEecCCC--ceEEEe-c--CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 43 3568877764 556666555431 111122 1 1234555544 455777754 5789999999876 44554
Q ss_pred E
Q 048178 337 L 337 (376)
Q Consensus 337 ~ 337 (376)
.
T Consensus 247 ~ 247 (267)
T 1npe_A 247 P 247 (267)
T ss_dssp C
T ss_pred c
Confidence 3
No 160
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=57.81 E-value=99 Score=27.21 Aligned_cols=192 Identities=9% Similarity=0.080 Sum_probs=97.3
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
.|+....+..+.+||..+++....-.......+.. ....+.+.+..+.+-+ .. .....+.+++.
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~-sg-----------s~D~~v~~wd~ 235 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA----DVLSLSINSLNANMFI-SG-----------SCDTTVRLWDL 235 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS----CEEEEEECSSSCCEEE-EE-----------ETTSCEEEEET
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc----CeEEEEeecCCCCEEE-EE-----------ECCCeEEEEEC
Confidence 45545557788999999988665322111111111 1234555443333222 21 12457888887
Q ss_pred CCC--ceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCC---CceeEEE
Q 048178 191 STN--SWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESS---LDVTLGI 262 (376)
Q Consensus 191 ~t~--~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~---~~~~l~~ 262 (376)
+.. .-+..... .....++.+ +|.....+.. ...|-.+|+.+..-.. +......... .-..++.
T Consensus 236 ~~~~~~~~~~~~h----~~~v~~v~~~p~~~~l~s~s~-----D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 236 RITSRAVRTYHGH----EGDINSVKFFPDGQRFGTGSD-----DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TTTCCCCEEECCC----SSCCCEEEECTTSSEEEEECS-----SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCCCcceEEECCc----CCCeEEEEEecCCCeEEEEcC-----CCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 642 12222111 011123333 4544333322 3368899998865433 3332221111 1123333
Q ss_pred -ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC----CCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 263 -YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG----PFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 263 -~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~----~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
.+|++.+++.. +..+.||.+...+- +..+. .......-+++.++|..++.. .++.+..||+++.+
T Consensus 307 s~~g~~l~~g~~--dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 307 SISGRLLFAGYS--NGDCYVWDTLLAEM--VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSSSEEEEECT--TSCEEEEETTTCCE--EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCEEEEEEC--CCCEEEEECCCCce--EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 36666666654 78899999876332 23331 111123446777788877764 57789999988753
No 161
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=57.40 E-value=87 Score=26.39 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=42.2
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeC--CcEEE-EEcCCeEEEEeCCCC
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKK--GAFFV-ESNSSQLLLYEPGTG 330 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~--g~i~~-~~~~~~~~~yd~~t~ 330 (376)
|.+.+.+.. +..+.||.++.+.|..+..+........-+++.++ |.+++ ...++.+..||++++
T Consensus 67 g~~l~s~s~--D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 67 GTILASCSY--DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp CSEEEEEET--TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred CCEEEEEcC--CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 565555554 78999999988778777666212222334555554 66554 456788999998876
No 162
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=57.03 E-value=92 Score=26.61 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=38.0
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCc--eeeEEEECCC--CceeeeEEEeeCCcEEEE-EcCCeEEEEeCCC
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQKKN--WIKQSSVGPF--IGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGT 329 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~~~--W~~~~~i~~~--~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t 329 (376)
|.+.++... +..+.||.++..+ -.....+... .....-+++..+|..++. ..++.+..||+.+
T Consensus 299 ~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 299 QKMLALGNQ--VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEECT--TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEec--CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 565555544 6889999998822 2233444212 122444566678886655 5678899999864
No 163
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=56.27 E-value=91 Score=26.28 Aligned_cols=183 Identities=10% Similarity=0.140 Sum_probs=85.7
Q ss_pred eEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 111 IVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
+++.......+.+||..+++... ++.... . ...+.+++.. .+ ++.. .....+.+|+
T Consensus 121 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~-----v~~~~~~~~~-~~-l~~~-----------~~d~~i~~wd 177 (312)
T 4ery_A 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD-----P-----VSAVHFNRDG-SL-IVSS-----------SYDGLCRIWD 177 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSS-----C-----EEEEEECTTS-SE-EEEE-----------ETTSCEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEecCCCC-----c-----EEEEEEcCCC-CE-EEEE-----------eCCCcEEEEE
Confidence 34434456678899988876433 332111 0 2345555432 22 2221 1244788899
Q ss_pred cCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEE-ecC
Q 048178 190 LSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGI-YDQ 265 (376)
Q Consensus 190 s~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~-~~g 265 (376)
.+++.-...-... .......+.+ +|.....+.. ...|..+|+.+.+.... ........ ....... .+|
T Consensus 178 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 249 (312)
T 4ery_A 178 TASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATL-----DNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGG 249 (312)
T ss_dssp TTTCCEEEEECCS--SCCCEEEEEECTTSSEEEEEET-----TTEEEEEETTTTEEEEEECSSCCSSS-CCCEEEECSSS
T ss_pred CCCCceeeEEecc--CCCceEEEEECCCCCEEEEEcC-----CCeEEEEECCCCcEEEEEEecCCceE-EEEEEEEeCCC
Confidence 8876532211000 0000112222 3443333332 34788999987664332 22211111 0111122 244
Q ss_pred eEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEE---cCCeEEEEeCC
Q 048178 266 SLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVES---NSSQLLLYEPG 328 (376)
Q Consensus 266 ~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~---~~~~~~~yd~~ 328 (376)
.+.+.+.. +..+.+|.++.. ..+..+........-+++.+++.+++.. .++.+..|+.+
T Consensus 250 ~~l~sg~~--dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSE--DNLVYIWNLQTK--EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECCT--TSCEEEEETTTC--CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEECC--CCEEEEEECCCc--hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 44444333 788999999873 2334442222223335556677766543 35557666643
No 164
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=56.27 E-value=91 Score=26.27 Aligned_cols=63 Identities=10% Similarity=0.194 Sum_probs=39.7
Q ss_pred eEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCC---cEEEE-EcCCeEEEEeCCCC
Q 048178 266 SLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKG---AFFVE-SNSSQLLLYEPGTG 330 (376)
Q Consensus 266 ~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g---~i~~~-~~~~~~~~yd~~t~ 330 (376)
++.+.... +..+.||.++. ..|.....+........-+++.+++ ..+.. ..++.+..||+++.
T Consensus 171 ~~l~sgs~--D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 171 RKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CEEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ceEEEEcC--CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 34444444 78899999876 4577777773222224445666653 55544 56778999998774
No 165
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=56.24 E-value=89 Score=26.19 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=80.6
Q ss_pred cceEEEEEcCCCce-EeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCcee
Q 048178 182 FSLVTVYNLSTNSW-RNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVT 259 (376)
Q Consensus 182 ~~~~~vyss~t~~W-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~ 259 (376)
...+.+++.+|++= +.++ ++.. .........++.+|-+... ...+.+||.++.+- ..++.|.. . ..
T Consensus 42 ~S~v~~vD~~tgkv~~~~~-l~~~-~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~tl~~~~ti~~~~~--G---wg 109 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAE-VPPP-YFGAGIVAWRDRLIQLTWR-----NHEGFVYDLATLTPRARFRYPGE--G---WA 109 (243)
T ss_dssp SCEEEEEETTTCCEEEEEE-CCTT-CCEEEEEEETTEEEEEESS-----SSEEEEEETTTTEEEEEEECSSC--C---CE
T ss_pred CceEEEEECCCCCEEEEEe-CCCC-cceeEEEEeCCEEEEEEee-----CCEEEEEECCcCcEEEEEeCCCC--c---eE
Confidence 56899999999853 3332 2211 1111234567889988755 44899999988554 55676532 1 24
Q ss_pred EEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee------EEEeeCCcEEEEE-cCCeEEEEeCCCCcE
Q 048178 260 LGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP------LLFWKKGAFFVES-NSSQLLLYEPGTGEL 332 (376)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~------~~~~~~g~i~~~~-~~~~~~~yd~~t~~~ 332 (376)
|+.-+++|++... +. .|++++...=..+.+| ....-..| +. +.+|+||... ....+...|++|++.
T Consensus 110 lt~dg~~L~vSdg---s~--~l~~iDp~t~~~~~~I-~V~~~g~~~~~lNeLe-~~~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 110 LTSDDSHLYMSDG---TA--VIRKLDPDTLQQVGSI-KVTAGGRPLDNLNELE-WVNGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp EEECSSCEEEECS---SS--EEEEECTTTCCEEEEE-ECEETTEECCCEEEEE-EETTEEEEEETTTTEEEEECTTTCBE
T ss_pred EeeCCCEEEEECC---CC--eEEEEeCCCCeEEEEE-EEccCCcccccceeeE-EeCCEEEEEECCCCeEEEEECCCCCE
Confidence 4444455777653 33 3666666333444444 22111111 12 2378888765 467899999999986
Q ss_pred E-EEEEe
Q 048178 333 R-DFELE 338 (376)
Q Consensus 333 ~-~v~~~ 338 (376)
. .+...
T Consensus 183 ~~~idl~ 189 (243)
T 3mbr_X 183 VAWIDLQ 189 (243)
T ss_dssp EEEEECG
T ss_pred EEEEECC
Confidence 4 56654
No 166
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=55.97 E-value=1.6e+02 Score=28.95 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=75.2
Q ss_pred cceEEEEEcCCC--c-eEeccccCccccCCCCeEEE-CceEEEEeeecCCCCccEEEEEECCC--ceEeeecCCCCCCCC
Q 048178 182 FSLVTVYNLSTN--S-WRNLKSIDYTMRLSSERTYF-DGAFYWLLKLENDNDNYVILSFHMAE--EKFQEIQGPCTLESS 255 (376)
Q Consensus 182 ~~~~~vyss~t~--~-W~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~i~~fD~~~--e~~~~i~lP~~~~~~ 255 (376)
...+.+.+..++ . |+.+..... .....+.- ++.+|+....+. ....|...|+++ +.|..+- |.....
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~~~~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~l~-~~~~~~- 365 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLK---AQWDFVDGVGDQLWFVSGDGA--PLKKIVRVDLSGSTPRFDTVV-PESKDN- 365 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSS---SCEEEEEEETTEEEEEECTTC--TTCEEEEEECSSSSCEEEEEE-CCCSSE-
T ss_pred cceEEEEECCCCCCcccEEecCCCC---ceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCccccEEEe-cCCCCe-
Confidence 346666666665 5 766542211 11112333 445776654321 145799999987 5777653 322111
Q ss_pred CceeEEEecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCC--ceeeeEEEeeCCc-EEEEEc----CCeEEEEeC
Q 048178 256 LDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFI--GIFQPLLFWKKGA-FFVESN----SSQLLLYEP 327 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~--~~~~~~~~~~~g~-i~~~~~----~~~~~~yd~ 327 (376)
-..+...++.|.+.... .....||+++- +. ....+ +++ .....+++..+++ +++... ...++.||+
T Consensus 366 -l~~~~~~~~~lv~~~~~--dg~~~l~~~~~~g~--~~~~l-~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 366 -LESVGIAGNRLFASYIH--DAKSQVLAFDLDGK--PAGAV-SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp -EEEEEEEBTEEEEEEEE--TTEEEEEEEETTSC--EEEEC-BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred -EEEEEEECCEEEEEEEE--CCEEEEEEEeCCCC--ceeec-cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 11233447777766665 55667777763 32 33444 332 2222333344555 655432 356999999
Q ss_pred CCCcEEEE
Q 048178 328 GTGELRDF 335 (376)
Q Consensus 328 ~t~~~~~v 335 (376)
++++.+.+
T Consensus 440 ~tg~~~~l 447 (741)
T 1yr2_A 440 ATAKTTPW 447 (741)
T ss_dssp TTTEEEEC
T ss_pred CCCcEEEE
Confidence 98876655
No 167
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=55.64 E-value=1.1e+02 Score=27.23 Aligned_cols=157 Identities=9% Similarity=0.007 Sum_probs=81.7
Q ss_pred eEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCC
Q 048178 151 KIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLEND 227 (376)
Q Consensus 151 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~ 227 (376)
..++.+|+..+. |.... .....+..++..++..+.+... ... ...++.+ +|.+||....
T Consensus 118 ~~gl~~d~~~~~--ly~~D----------~~~~~I~r~~~~g~~~~~~~~~--~~~-~p~glavd~~~g~lY~~d~~--- 179 (386)
T 3v65_B 118 AIALDFHHRREL--VFWSD----------VTLDRILRANLNGSNVEEVVST--GLE-SPGGLAVDWVHDKLYWTDSG--- 179 (386)
T ss_dssp EEEEEEETTTTE--EEEEE----------TTTTEEEEEETTSCCEEEEECS--SCS-CCCCEEEETTTTEEEEEETT---
T ss_pred cEEEEEecCCCe--EEEEe----------CCCCcEEEEecCCCCcEEEEeC--CCC-CccEEEEEeCCCeEEEEcCC---
Confidence 357888876553 22221 1245777788877665544211 111 1124433 6899997754
Q ss_pred CCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeE
Q 048178 228 NDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPL 305 (376)
Q Consensus 228 ~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~ 305 (376)
...|..+|+....-..+. ..... ....+++- +|.|+..... ....+....++.. -.+. .+ . ..+..|-
T Consensus 180 --~~~I~~~~~dg~~~~~l~-~~~l~--~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~-~~~~-~~-~-~~~~~Pn 249 (386)
T 3v65_B 180 --TSRIEVANLDGAHRKVLL-WQSLE--KPRAIALHPMEGTIYWTDWG-NTPRIEASSMDGS-GRRI-IA-D-THLFWPN 249 (386)
T ss_dssp --TTEEEECBTTSCSCEEEE-CSSCS--CEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC-SCEE-EE-C-SSCSCEE
T ss_pred --CCeEEEEeCCCCceEEee-cCCCC--CCcEEEEEcCCCeEEEeccC-CCCEEEEEeCCCC-CcEE-EE-E-CCCCCee
Confidence 347888888765433331 11111 11345554 5678877653 1255555555542 1111 11 1 1133444
Q ss_pred EE--e-eCCcEEEEEc-CCeEEEEeCCCCcEEEE
Q 048178 306 LF--W-KKGAFFVESN-SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 306 ~~--~-~~g~i~~~~~-~~~~~~yd~~t~~~~~v 335 (376)
++ . .++.||+... .+.+..+|+.+...+.+
T Consensus 250 Glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 44 3 3566887754 56789999887654444
No 168
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=55.42 E-value=1.1e+02 Score=27.20 Aligned_cols=68 Identities=13% Similarity=0.263 Sum_probs=41.3
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCc-EEEEE
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGE-LRDFE 336 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~-~~~v~ 336 (376)
|.+.+.+.. +..+.||.+..+ ..+..+........-+++..+|..++. ..++.+.+||.++++ +..+.
T Consensus 308 g~~l~sgs~--D~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 308 GPFLLSGSR--DKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp CCEEEEEET--TSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred CCEEEEEeC--CCeEEEEECCCC--ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 444444444 788999998863 233333122222344566677776554 567889999998875 34443
No 169
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=55.31 E-value=92 Score=26.04 Aligned_cols=59 Identities=10% Similarity=0.237 Sum_probs=40.7
Q ss_pred CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 276 DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 276 ~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
+.++.||.++.++-.+............-+++..+|+.++. ..++.+..||.++++...
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 57899999988666665554212222444666778887665 567889999999987544
No 170
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=55.09 E-value=1.8e+02 Score=29.22 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=65.3
Q ss_pred CeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE--ecCeEEEEEecCCCCEEEEEEe
Q 048178 210 ERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI--YDQSLSLLLLDTVDHCFKIWVM 284 (376)
Q Consensus 210 ~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~l~vW~l 284 (376)
.++.+ +|.|||.... ...|.++|+.......+-. .... ....|++ .+|.||..... ....|.+..+
T Consensus 474 ~GLAvD~~~~~LY~tD~~-----~~~I~v~~ldG~~~~~l~~-~~l~--~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFR-ENGS--KPRAIVVDPVHGFMYWTDWG-TPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETT-----TTEEEEEETTSSSEEEEEE-CTTC--CEEEEEEETTTTEEEEEECS-SSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecC-----CCeEEEEeCCCCeEEEEEe-CCCC--CcceEEEecCCCCEEEecCC-CCCeEEEEec
Confidence 35555 4699998754 4489999998665444421 1111 1234555 35778888762 2356666556
Q ss_pred CCCceeeEEEECCCCceeeeEEEe---eCCcEEEEEc-CCeEEEEeCCCCcEEEEE
Q 048178 285 QKKNWIKQSSVGPFIGIFQPLLFW---KKGAFFVESN-SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~---~~g~i~~~~~-~~~~~~yd~~t~~~~~v~ 336 (376)
+.. -.+. .+ ...+..|.++. .++.||+... ...|..+|+.+...+.+.
T Consensus 545 dG~-~~~~-lv--~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 545 NGV-DIYS-LV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp TSC-CEEE-EE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCC-ceEE-EE--eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence 542 1111 12 12244666654 2566887753 467999999887766653
No 171
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=54.76 E-value=1e+02 Score=26.49 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=55.5
Q ss_pred cEEEEEECCCceEeeec-CCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECC-CCceeeeEEE
Q 048178 231 YVILSFHMAEEKFQEIQ-GPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGP-FIGIFQPLLF 307 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~-lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~-~~~~~~~~~~ 307 (376)
..|..+|+++.+...+. ...... -..+... +|.+.+.+.. +..+.||.+...+-. ...+.. ...-..-+++
T Consensus 149 g~i~~wd~~~~~~~~~~~~~~~~~---i~~~~~~pdg~~lasg~~--dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~f 222 (343)
T 3lrv_A 149 GTIGFQSYEDDSQYIVHSAKSDVE---YSSGVLHKDSLLLALYSP--DGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKF 222 (343)
T ss_dssp CCEEEEESSSSCEEEEECCCSSCC---CCEEEECTTSCEEEEECT--TSCEEEEESSCTTSC-CEECCCCTTSCEEEEEE
T ss_pred CcEEEEECCCCcEEEEEecCCCCc---eEEEEECCCCCEEEEEcC--CCEEEEEECCCCCCC-ccEEeccCCCCEEEEEE
Confidence 36888999877664332 221111 1233333 5555555544 789999999873222 022311 2222444666
Q ss_pred eeCCcEEEEEcCCeEEEEeCCCCc
Q 048178 308 WKKGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 308 ~~~g~i~~~~~~~~~~~yd~~t~~ 331 (376)
.++|..++...++.+..||+++.+
T Consensus 223 s~~g~~l~s~~~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 223 ADNGYWMVVECDQTVVCFDLRKDV 246 (343)
T ss_dssp CTTSSEEEEEESSBEEEEETTSST
T ss_pred eCCCCEEEEEeCCeEEEEEcCCCC
Confidence 778887776556689999998864
No 172
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=54.05 E-value=1e+02 Score=26.27 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=41.1
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~~ 334 (376)
+|+..++... +..+.+|.+... ...+..+.....-..-+++.+++..++ ...++.+..||+++++...
T Consensus 186 ~~~~l~~~~~--dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 186 KGKYIIAGHK--DGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp GGCEEEEEET--TSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcC--CCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 4555444444 688999998861 223333311222234456666777555 4567889999999876544
No 173
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=53.74 E-value=1.8e+02 Score=28.81 Aligned_cols=198 Identities=14% Similarity=0.053 Sum_probs=101.9
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCC-----CCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCc
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYR-----AIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPF 182 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~-----~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 182 (376)
.+|-|-+.....-+..++|.++.+..+...+ ....... ...+..|.... +.+.. ..
T Consensus 322 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----v~~i~~d~~g~----lWigt----------~~ 382 (781)
T 3v9f_A 322 SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV-----VSSVCDDGQGK----LWIGT----------DG 382 (781)
T ss_dssp SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC-----EEEEEECTTSC----EEEEE----------BS
T ss_pred CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc-----eEEEEEcCCCC----EEEEe----------CC
Confidence 3555555554445688899888776664321 1111111 23455554322 22221 12
Q ss_pred ceEEEEEcCCCceEeccccCcccc-CCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCcee
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMR-LSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVT 259 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~ 259 (376)
..+..|+.+++.++... .+.... ....+++. +|. .|++.. ...+..||..++++..+..+ ......-..
T Consensus 383 ~Gl~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~d~~g~-lWigt~-----~~Gl~~~~~~~~~~~~~~~~-~~~~~~v~~ 454 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNK-ENRELLSNSVLCSLKDSEGN-LWFGTY-----LGNISYYNTRLKKFQIIELE-KNELLDVRV 454 (781)
T ss_dssp SCEEEEETTEEEEECC------CCCSBEEEEEECTTSC-EEEEET-----TEEEEEECSSSCEEEECCST-TTCCCCEEE
T ss_pred CcEEEEECCCCeEEEcc-CCCCCCCcceEEEEECCCCC-EEEEec-----cCCEEEEcCCCCcEEEeccC-CCCCCeEEE
Confidence 34666777766665442 111111 11123333 354 456653 23799999999999887543 111111133
Q ss_pred EEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECC--C-CceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEE
Q 048178 260 LGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGP--F-IGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 260 l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~--~-~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v 335 (376)
+.+- +|.|.+... ..+.++..+..+|........ . .....-+....+|.|++....+.++.||+++++++.+
T Consensus 455 i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 455 FYEDKNKKIWIGTH----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKF 530 (781)
T ss_dssp EEECTTSEEEEEET----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEE
T ss_pred EEECCCCCEEEEEC----CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEc
Confidence 4443 456666543 345555555566766543310 0 1112233444578899988755699999999988776
Q ss_pred E
Q 048178 336 E 336 (376)
Q Consensus 336 ~ 336 (376)
.
T Consensus 531 ~ 531 (781)
T 3v9f_A 531 N 531 (781)
T ss_dssp C
T ss_pred c
Confidence 3
No 174
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=53.55 E-value=1.1e+02 Score=26.21 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=54.9
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK 309 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (376)
..|..+|+.+.+....-.... . .-..+... +|++.+.... +..+.||.+... ..+..+ ....-..-+++.+
T Consensus 176 ~~i~~wd~~~~~~~~~~~~h~--~-~v~~~~~sp~g~~l~s~~~--dg~i~iwd~~~~--~~~~~~-~~~~~v~~~~~sp 247 (319)
T 3frx_A 176 KMVKAWNLNQFQIEADFIGHN--S-NINTLTASPDGTLIASAGK--DGEIMLWNLAAK--KAMYTL-SAQDEVFSLAFSP 247 (319)
T ss_dssp SCEEEEETTTTEEEEEECCCC--S-CEEEEEECTTSSEEEEEET--TCEEEEEETTTT--EEEEEE-ECCSCEEEEEECS
T ss_pred CEEEEEECCcchhheeecCCC--C-cEEEEEEcCCCCEEEEEeC--CCeEEEEECCCC--cEEEEe-cCCCcEEEEEEcC
Confidence 368888988765433211110 0 11233333 5565555544 789999999873 233444 2222244467777
Q ss_pred CCcEEEEEcCCeEEEEeCCCCcE
Q 048178 310 KGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 310 ~g~i~~~~~~~~~~~yd~~t~~~ 332 (376)
+|.++.......+..|+++++..
T Consensus 248 ~~~~la~~~~~~i~v~~~~~~~~ 270 (319)
T 3frx_A 248 NRYWLAAATATGIKVFSLDPQYL 270 (319)
T ss_dssp SSSEEEEEETTEEEEEEETTEEE
T ss_pred CCCEEEEEcCCCcEEEEeCcCee
Confidence 88877776666788888877643
No 175
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=53.52 E-value=1.1e+02 Score=26.44 Aligned_cols=146 Identities=10% Similarity=0.081 Sum_probs=75.0
Q ss_pred ceEEEEEcC--CCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCc-eEeee----cCCCCC---
Q 048178 183 SLVTVYNLS--TNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEE-KFQEI----QGPCTL--- 252 (376)
Q Consensus 183 ~~~~vyss~--t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e-~~~~i----~lP~~~--- 252 (376)
..+.+|... ++..+.+...+... .....+..+|...+.+... ...+..||+.+. ....+ ......
T Consensus 75 ~~v~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~dg~~l~~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~ 149 (361)
T 3scy_A 75 AAVSAFAFDKEKGTLHLLNTQKTMG-ADPCYLTTNGKNIVTANYS----GGSITVFPIGQDGALLPASDVIEFKGSGPDK 149 (361)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECSS-SCEEEEEECSSEEEEEETT----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCT
T ss_pred CcEEEEEEeCCCCcEEEeeEeccCC-CCcEEEEECCCEEEEEECC----CCEEEEEEeCCCCcCcccceeEEccCCCCCc
Confidence 466666554 46676655332111 1112333477755555433 347888888643 22111 111000
Q ss_pred --CCCCcee-EEEe-cCe-EEEEEecCCCCEEEEEEeCCCc-------eeeE-----EEECCCCceeeeEEEeeCCc-EE
Q 048178 253 --ESSLDVT-LGIY-DQS-LSLLLLDTVDHCFKIWVMQKKN-------WIKQ-----SSVGPFIGIFQPLLFWKKGA-FF 314 (376)
Q Consensus 253 --~~~~~~~-l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~-------W~~~-----~~i~~~~~~~~~~~~~~~g~-i~ 314 (376)
....... +... +|+ |++... ....+.+|.++... .... ..+ +......-+++.++|+ ++
T Consensus 150 ~~~~~~~~~~~~~spdg~~l~~~~~--~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 150 ERQTMPHLHCVRITPDGKYLLADDL--GTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp TTCSSCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTTSSEEE
T ss_pred cccCCCcceEEEECCCCCEEEEEeC--CCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCCCCEEE
Confidence 0001122 3333 666 555443 36789999998732 3222 222 2221233466677887 55
Q ss_pred EEE-cCCeEEEEeCCCCcEEEEE
Q 048178 315 VES-NSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 315 ~~~-~~~~~~~yd~~t~~~~~v~ 336 (376)
+.. ..+.+..||+++++++.+.
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEE
T ss_pred EEcCCCCeEEEEEecCCceEEeE
Confidence 555 4678999999988876653
No 176
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=53.24 E-value=1e+02 Score=26.05 Aligned_cols=181 Identities=12% Similarity=0.059 Sum_probs=92.0
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc-eEec
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS-WRNL 198 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~-W~~~ 198 (376)
.+.+||+.+++....-+... . ..++.++|..+ + ++.... .....+.+|+...+. -...
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~----~------~~~~~~spdg~-~-l~~~~~---------~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPY----D------AVGIAISPNGN-G-LILIDR---------SSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEEEEETTTTEEEEEEECCT----T------EEEEEECTTSS-C-EEEEEE---------TTTTEEEEEEECTTCCEEEE
T ss_pred cEEEEECCCCCeEEEEECCC----C------ccceEECCCCC-E-EEEEec---------CCCceEEEEEECCCCcEeec
Confidence 89999999988655321111 0 23566666543 3 222211 112237777766532 1111
Q ss_pred c--ccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceE----eeecCCCCCCCCCceeEEEe-cCe-EE
Q 048178 199 K--SIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKF----QEIQGPCTLESSLDVTLGIY-DQS-LS 268 (376)
Q Consensus 199 ~--~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~----~~i~lP~~~~~~~~~~l~~~-~g~-L~ 268 (376)
. ..+.. .....+. -+|...++.... ...|..+|+++.+. ..++.+ .. ...+... +|+ |+
T Consensus 168 ~~~~~~~~--~~~~~~~~spdg~~l~v~~~~----~~~v~v~d~~~~~~~~~~~~~~~~--~~---~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 168 GQEFISGG--TRPFNITFTPDGNFAFVANLI----GNSIGILETQNPENITLLNAVGTN--NL---PGTIVVSRDGSTVY 236 (331)
T ss_dssp EEEEECSS--SSEEEEEECTTSSEEEEEETT----TTEEEEEECSSTTSCEEEEEEECS--SC---CCCEEECTTSSEEE
T ss_pred CCccccCC--CCccceEECCCCCEEEEEeCC----CCeEEEEECCCCcccceeeeccCC--CC---CceEEECCCCCEEE
Confidence 0 00000 1111222 257644444433 34788999987653 333322 11 1233333 566 44
Q ss_pred EEEecCCCCEEEEEEeCCCceeeEEEECCCC----c-e---eeeEEEeeCCc-EEEEEc-CCeEEEEeCCCCcEEEE
Q 048178 269 LLLLDTVDHCFKIWVMQKKNWIKQSSVGPFI----G-I---FQPLLFWKKGA-FFVESN-SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 269 l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~----~-~---~~~~~~~~~g~-i~~~~~-~~~~~~yd~~t~~~~~v 335 (376)
+... ....+.+|.++.++...+..+ +.. . . ...+++.++|+ +++... .+.+.+||+.++....+
T Consensus 237 v~~~--~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 237 VLTE--STVDVFNFNQLSGTLSFVKSF-GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp EECS--SEEEEEEEETTTTEEEEEEEE-ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred EEEc--CCCEEEEEECCCCceeeeccc-ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence 4443 255688888877555444444 211 0 0 12357777887 445544 56799999999887766
No 177
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=52.68 E-value=1.8e+02 Score=28.55 Aligned_cols=185 Identities=9% Similarity=0.069 Sum_probs=89.7
Q ss_pred eEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 111 IVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
+|........+.|||..+++... +..... . ...+.+.+.. .+ ++.. . ....+.||+
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-----~-----v~~~~~s~~~-~~-l~~~-~----------~dg~i~vw~ 83 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTET-----P-----VRAGKFIARK-NW-IIVG-S----------DDFRIRVFN 83 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSS-----C-----EEEEEEEGGG-TE-EEEE-E----------TTSEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEecCCC-----c-----EEEEEEeCCC-CE-EEEE-e----------CCCeEEEEE
Confidence 33334445677999988876544 221111 1 2345555432 22 2222 1 245788999
Q ss_pred cCCCceEec-cccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCc-eEeeecCCCCCCCCCceeEEEe--
Q 048178 190 LSTNSWRNL-KSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEE-KFQEIQGPCTLESSLDVTLGIY-- 263 (376)
Q Consensus 190 s~t~~W~~~-~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e-~~~~i~lP~~~~~~~~~~l~~~-- 263 (376)
..++..... ..... ....+.+ +|..-..+.. ...|..+|+.+. .......... . .-..+...
T Consensus 84 ~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~-~--~v~~~~~~p~ 151 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPD----YIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENNWALEQTFEGHE-H--FVMCVAFNPK 151 (814)
T ss_dssp TTTCCEEEEEECCSS----CEEEEEECSSSSEEEEEET-----TSEEEEEEGGGTSEEEEEEECCS-S--CEEEEEEETT
T ss_pred CCCCcEEEEEecCCC----CEEEEEEeCCCCEEEEEcC-----CCEEEEEECCCCceEEEEEcCCC-C--cEEEEEEEcC
Confidence 888765322 11110 0112222 3433222222 337888888765 3322211110 0 11233333
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee--CCcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK--KGAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~--~g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
+|.+.++... +..+.+|.++...-...... ....-...+.+.. +|..++. ..++.+..||.++++..
T Consensus 152 ~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 152 DPSTFASGCL--DRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp EEEEEEEEET--TSEEEEEETTCSSCSEEEEC-CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcceeEEec-CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 3445555544 68999999877322222222 1111123345454 6665554 56788999999887643
No 178
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=51.72 E-value=1.2e+02 Score=26.30 Aligned_cols=139 Identities=17% Similarity=0.097 Sum_probs=74.2
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
...+++++..+..=+.+... .. ....++.+ +|.+||..... ...|..+|+....-..+-- ... ....
T Consensus 100 ~~~I~~~~~dG~~~~~l~~~--~~-~~P~giavdp~~g~ly~td~~~----~~~I~r~~~dG~~~~~~~~-~~l--~~Pn 169 (318)
T 3sov_A 100 TNRIEVSNLDGSLRKVLFWQ--EL-DQPRAIALDPSSGFMYWTDWGE----VPKIERAGMDGSSRFIIIN-SEI--YWPN 169 (318)
T ss_dssp TTEEEEEETTSCSCEEEECS--SC-SSEEEEEEEGGGTEEEEEECSS----SCEEEEEETTSCSCEEEEC-SSC--SCEE
T ss_pred CCEEEEEECCCCcEEEEEeC--CC-CCccEEEEeCCCCEEEEEecCC----CCEEEEEEcCCCCeEEEEE-CCC--CCcc
Confidence 45788888776533332111 11 11134444 58999976432 3479999987543332211 111 1123
Q ss_pred eEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEEE-cCCeEEEEeCCCCc-EE
Q 048178 259 TLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEPGTGE-LR 333 (376)
Q Consensus 259 ~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~-~~~~~~~yd~~t~~-~~ 333 (376)
.|+.- ++.||.+... ...+....++... .++. + . ..+..|.++.- ++.+|... ..+.+..+|+.+++ .+
T Consensus 170 glavd~~~~~lY~aD~~--~~~I~~~d~dG~~-~~~~-~-~-~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAK--LNFIHKSNLDGTN-RQAV-V-K-GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEEETTSCS-CEEE-E-C-SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred EEEEeccCCEEEEEECC--CCEEEEEcCCCCc-eEEE-e-c-CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence 45554 5678888764 5666666666421 1111 1 1 12456666654 44566664 45789999996654 44
Q ss_pred EEE
Q 048178 334 DFE 336 (376)
Q Consensus 334 ~v~ 336 (376)
.+.
T Consensus 244 ~i~ 246 (318)
T 3sov_A 244 EIH 246 (318)
T ss_dssp EEE
T ss_pred EEe
Confidence 453
No 179
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=51.60 E-value=1.1e+02 Score=25.96 Aligned_cols=189 Identities=8% Similarity=-0.053 Sum_probs=93.4
Q ss_pred ecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|-|.+.+ ....++.+||.++....++... . ..++.+|+..+ . +|+- . . .....+.
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~------~-----p~gia~~~dG~-l-~vad-~--~------~~~~~v~ 98 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDGNQQIHATVEG------K-----VSGLAFTSNGD-L-VATG-W--N------ADSIPVV 98 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEEEEECSS------E-----EEEEEECTTSC-E-EEEE-E--C------TTSCEEE
T ss_pred CCCCEEEEeCCCCeEEEECCCCceEEEEeCCC------C-----ceeEEEcCCCc-E-EEEe-c--c------CCcceEE
Confidence 366666665 4567888998876543333211 0 24677776543 2 2221 1 0 1123466
Q ss_pred EEEcCCCceEeccccCccccCCCCeE--EECceEEEEeeecCCCCccEEEEEECCCceEeee---c-----CCCCCCCCC
Q 048178 187 VYNLSTNSWRNLKSIDYTMRLSSERT--YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI---Q-----GPCTLESSL 256 (376)
Q Consensus 187 vyss~t~~W~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~-----lP~~~~~~~ 256 (376)
.|+..+++.+.+...+.. .. ..++ ..+|.+|... .. ...|..+|..+...... . .+.. ....
T Consensus 99 ~~d~~~g~~~~~~~~~~~-~~-~~g~~~~~~~~~~v~d-~~----~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~-~~~~ 170 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDA-IF-LNGITPLSDTQYLTAD-SY----RGAIWLIDVVQPSGSIWLEHPMLARSNSES-VFPA 170 (306)
T ss_dssp EEECTTSCEEEEEECTTC-SC-EEEEEESSSSEEEEEE-TT----TTEEEEEETTTTEEEEEEECGGGSCSSTTC-CSCS
T ss_pred EEcCCCCeEEEEEeCCCc-cc-cCcccccCCCcEEEEE-CC----CCeEEEEeCCCCcEeEEEECCccccccccC-CCCc
Confidence 677777776654433211 10 1121 2234455432 22 34789999876432221 0 1111 0011
Q ss_pred ceeEEEecC-eEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEEEEEc-CCeEEEEeCCCC
Q 048178 257 DVTLGIYDQ-SLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTG 330 (376)
Q Consensus 257 ~~~l~~~~g-~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~~~~~~yd~~t~ 330 (376)
...+ .-+| .|++.... ...+.++.++. ++......+.... ...-+++..+|.+|+... .+++..||++.+
T Consensus 171 pngi-s~dg~~lyv~d~~--~~~I~~~~~~~~g~~~~~~~~~~~~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~ 243 (306)
T 2p4o_A 171 ANGL-KRFGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVEQT-NIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 243 (306)
T ss_dssp EEEE-EEETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEEESC-CCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred CCCc-CcCCCEEEEEeCC--CCEEEEEEeCCCCCCCccEEEeccC-CCCCeEECCCCCEEEEeCCCCeEEEECCCCC
Confidence 1234 4455 47776653 56777777764 2221111110010 122366677888988754 567999999744
No 180
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=51.37 E-value=1.2e+02 Score=26.35 Aligned_cols=189 Identities=7% Similarity=0.007 Sum_probs=89.4
Q ss_pred eecceEEEe-ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIE-GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-.++. ..+..+.|||..+++....-.. +... ...+.+.+.... .++.. .....+
T Consensus 136 spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~----h~~~-----V~~~~~~~~~~~-~l~s~-----------s~D~~v 194 (344)
T 4gqb_B 136 LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA----HAAQ-----VTCVAASPHKDS-VFLSC-----------SEDNRI 194 (344)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSC-----EEEEEECSSCTT-EEEEE-----------ETTSCE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----cCCc-----eEEEEecCCCCC-ceeee-----------cccccc
Confidence 345544443 4467789999999876542211 1111 234555444333 22222 124578
Q ss_pred EEEEcCCCceE-eccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeE
Q 048178 186 TVYNLSTNSWR-NLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTL 260 (376)
Q Consensus 186 ~vyss~t~~W~-~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l 260 (376)
.+++.+++.-. .+..... .....++.+ ++.+. ..... ...|..+|+++.+- ..+... .. .-..+
T Consensus 195 ~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~l-~sg~~----dg~v~~wd~~~~~~~~~~~~h--~~--~v~~v 263 (344)
T 4gqb_B 195 LLWDTRCPKPASQIGCSAP--GYLPTSLAWHPQQSEVF-VFGDE----NGTVSLVDTKSTSCVLSSAVH--SQ--CVTGL 263 (344)
T ss_dssp EEEETTSSSCEEECC------CCCEEEEEECSSCTTEE-EEEET----TSEEEEEESCC--CCEEEECC--SS--CEEEE
T ss_pred ccccccccceeeeeeccee--eccceeeeecCCCCcce-EEecc----CCcEEEEECCCCcEEEEEcCC--CC--CEEEE
Confidence 88988876432 2211100 001112322 23333 22222 23688889877543 112211 00 11223
Q ss_pred EEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-EcCCeEEEEeCCCCcE
Q 048178 261 GIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 261 ~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~~~~~~~yd~~t~~~ 332 (376)
.-. +|. +.+.+.. +..+.||.++.++ +.++........-+++..+|. ++.. ..++.+..+++.++.+
T Consensus 264 ~fsp~g~~~lasgs~--D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 264 VFSPHSVPFLASLSE--DCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EECSSSSCCEEEEET--TSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEccCCCeEEEEEeC--CCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 332 443 4444444 7889999776532 223322332344466666665 6654 5678899999988654
No 181
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=51.22 E-value=3.6 Score=37.13 Aligned_cols=27 Identities=4% Similarity=-0.129 Sum_probs=16.3
Q ss_pred CeEEECceEEEEeeecCCCCccEEEEEECCCce
Q 048178 210 ERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK 242 (376)
Q Consensus 210 ~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~ 242 (376)
.++..+|.+|.-..++ .+.++|.++.+
T Consensus 4 sP~v~~~~v~~gs~dg------~v~a~d~~tG~ 30 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDG------SLHAVSKRTGS 30 (369)
T ss_dssp ----CTTEEEEEETTS------EEEEEETTTCC
T ss_pred CCeeeCCEEEEEcCCC------EEEEEECCCCC
Confidence 3456677788655433 79999987654
No 182
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=50.87 E-value=1.4e+02 Score=26.79 Aligned_cols=193 Identities=7% Similarity=0.048 Sum_probs=91.8
Q ss_pred eEEEeecCCeEEEEecCccce--eec-CCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 111 IVFIEGLNNRITLWNIATRES--VTL-PKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~--~~L-P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+|+.....+.+.||+..++.. ..+ +......... ....+.+.+..+.+-+.+- ....+.+
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~l~s~~------------~dg~i~i 258 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-----VVEDVAWHLLHESLFGSVA------------DDQKLMI 258 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-----CEEEEEECSSCTTEEEEEE------------TTSEEEE
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-----CEeeeEEeCCCCCEEEEEe------------CCCeEEE
Confidence 666666677889999887321 111 1111101111 1235666654443322221 2557899
Q ss_pred EEcCCCc-eEeccccCccccCCCCeEEEC--ce-EEEEeeecCCCCccEEEEEECCCce--EeeecCCCCCCCCCceeEE
Q 048178 188 YNLSTNS-WRNLKSIDYTMRLSSERTYFD--GA-FYWLLKLENDNDNYVILSFHMAEEK--FQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 188 yss~t~~-W~~~~~~~~~~~~~~~~v~~~--G~-lywl~~~~~~~~~~~i~~fD~~~e~--~~~i~lP~~~~~~~~~~l~ 261 (376)
|+.+++. .+.+..... ......++.++ |. ++..+.. ...|..+|+.+.. ...+.. ... .-..+.
T Consensus 259 ~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~-----dg~v~vwd~~~~~~~~~~~~~--h~~--~v~~i~ 328 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFILATGSA-----DKTVALWDLRNLKLKLHSFES--HKD--EIFQVQ 328 (430)
T ss_dssp EETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTTEEEEEET-----TSEEEEEETTCTTSCSEEEEC--CSS--CEEEEE
T ss_pred EECCCCCCCcceeEeec-CCCCeEEEEeCCCCCCEEEEEeC-----CCeEEEEeCCCCCCCeEEeec--CCC--CEEEEE
Confidence 9998752 222111100 00111233333 43 3433332 3378999987632 222221 100 112233
Q ss_pred Ee-cCe-EEEEEecCCCCEEEEEEeCC-Cc-----------eeeEEEECCCCceeeeEEEeeCCc-EEEE-EcCCeEEEE
Q 048178 262 IY-DQS-LSLLLLDTVDHCFKIWVMQK-KN-----------WIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SNSSQLLLY 325 (376)
Q Consensus 262 ~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~-----------W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~~~~~~~y 325 (376)
.. +|. +++.... +..+.||.+.. .. -..+...........-+.+..++. +++. ..++.+.+|
T Consensus 329 ~sp~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 329 WSPHNETILASSGT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp ECSSCTTEEEEEET--TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred ECCCCCCEEEEEeC--CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 32 343 5555544 67899999876 11 123333311122234456566776 5554 567778899
Q ss_pred eCCCCcE
Q 048178 326 EPGTGEL 332 (376)
Q Consensus 326 d~~t~~~ 332 (376)
++.++.+
T Consensus 407 ~~~~~~~ 413 (430)
T 2xyi_A 407 QMAENVY 413 (430)
T ss_dssp EECHHHH
T ss_pred Ecccccc
Confidence 8876543
No 183
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=50.78 E-value=1.2e+02 Score=25.96 Aligned_cols=97 Identities=20% Similarity=0.128 Sum_probs=52.3
Q ss_pred cceEEEEEcCCC---ceEeccccCccccCCCCeEEE--CceEEEEeeecC-C-----CCccEEEEEECCCceEeeecCCC
Q 048178 182 FSLVTVYNLSTN---SWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLEN-D-----NDNYVILSFHMAEEKFQEIQGPC 250 (376)
Q Consensus 182 ~~~~~vyss~t~---~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~-~-----~~~~~i~~fD~~~e~~~~i~lP~ 250 (376)
...+.+|+..+. ..+.+...+. ..++.+ +|.+ |++.... . .....|..||...+....+..|.
T Consensus 206 ~~~I~~~~~~~~~~~~~~~~~~~~g-----P~gi~~d~~G~l-~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~ 279 (322)
T 2fp8_A 206 SHQIVKYWLEGPKKGTAEVLVKIPN-----PGNIKRNADGHF-WVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 279 (322)
T ss_dssp GTEEEEEESSSTTTTCEEEEEECSS-----EEEEEECTTSCE-EEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCT
T ss_pred CCeEEEEECCCCcCCccceEEeCCC-----CCCeEECCCCCE-EEEecCcccccccCCCccEEEEECCCCCEEEEEECCC
Confidence 457777777652 3443322211 234444 4764 5554320 0 00246999999887777787775
Q ss_pred CCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC
Q 048178 251 TLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK 286 (376)
Q Consensus 251 ~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~ 286 (376)
.........++.-+|.|++.... ...+.++.++.
T Consensus 280 g~~~~~~~~~~~~~g~L~v~~~~--~~~i~~~~~~~ 313 (322)
T 2fp8_A 280 PFAGEHFEQIQEHDGLLYIGTLF--HGSVGILVYDK 313 (322)
T ss_dssp TTTTSCCCEEEEETTEEEEECSS--CSEEEEEEC--
T ss_pred CCccccceEEEEeCCEEEEeecC--CCceEEEeccc
Confidence 43221223344557788877654 56666666554
No 184
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=50.31 E-value=1.4e+02 Score=26.60 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=53.6
Q ss_pred cEEEEEECCCceE-eeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe
Q 048178 231 YVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW 308 (376)
Q Consensus 231 ~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~ 308 (376)
..|..+|+.+.+. ..+..|.... .-..+... +|.+.+.+.. +..+.||.+...+-.....+ +...-..-+++.
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~ 266 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHG--AVSSICIDEECCVLILGTT--RGIIDIWDIRFNVLIRSWSF-GDHAPITHVEVC 266 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGC--CEEEEEECTTSCEEEEEET--TSCEEEEETTTTEEEEEEBC-TTCEEEEEEEEC
T ss_pred CeEEEEeCCCCeeeEEEccCCCCC--ceEEEEECCCCCEEEEEcC--CCeEEEEEcCCccEEEEEec-CCCCceEEEEec
Confidence 4899999987654 3334432111 11233332 5555555554 68899999987433333222 222111122221
Q ss_pred ----eCCcEEEEE-cCCeEEEEeCCCCcEEE
Q 048178 309 ----KKGAFFVES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 309 ----~~g~i~~~~-~~~~~~~yd~~t~~~~~ 334 (376)
.++.+++.. .++.+..||+++++...
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence 345566654 46679999999876443
No 185
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=49.99 E-value=1.6e+02 Score=27.39 Aligned_cols=137 Identities=9% Similarity=-0.018 Sum_probs=71.0
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCcee
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVT 259 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~ 259 (376)
...+.+|+..++.... ..... .......+.+ +|.+...+.. ...|..+|+.+.+-... +...... .-..
T Consensus 466 d~~i~~~~~~~~~~~~-~~~~~-~~~~v~~~~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~-~~~~h~~-~v~~ 536 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF-DLKTP-LRAKPSYISISPSETYIAAGDV-----MGKILLYDLQSREVKTS-RWAFRTS-KINA 536 (615)
T ss_dssp TSCEEEEETTEEEEEE-ECSSC-CSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEC-CSCCCSS-CEEE
T ss_pred CCeEEEEECCCccccc-cccCC-ccCceEEEEECCCCCEEEEcCC-----CCeEEEeeCCCCcceeE-eecCCCC-ceeE
Confidence 3468888888765532 11110 1111123333 5665444433 23688899987654322 2210111 1123
Q ss_pred EEEe-----------cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCC
Q 048178 260 LGIY-----------DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPG 328 (376)
Q Consensus 260 l~~~-----------~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~ 328 (376)
+... +|++.+.... +..+.||.++... ..+..+.....-..-+++..+|.++....++.+..||++
T Consensus 537 ~~~sp~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 537 ISWKPAEKGANEEEIEEDLVATGSL--DTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVV 613 (615)
T ss_dssp EEECCCC------CCSCCEEEEEET--TSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC
T ss_pred EEEcCccccccccccCCCEEEEEcC--CCcEEEEECCCCc-eechhhhcCccceEEEEEcCCCCeEEecCCceEEEEeee
Confidence 3332 4665555554 6799999998732 233334212222444667778883334667789999987
Q ss_pred CC
Q 048178 329 TG 330 (376)
Q Consensus 329 t~ 330 (376)
++
T Consensus 614 ~~ 615 (615)
T 1pgu_A 614 LE 615 (615)
T ss_dssp --
T ss_pred cC
Confidence 63
No 186
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.61 E-value=1.4e+02 Score=26.30 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=55.8
Q ss_pred cEEEEEECCCceEee-e--cCCCCCCCCCceeEEE--ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeE
Q 048178 231 YVILSFHMAEEKFQE-I--QGPCTLESSLDVTLGI--YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPL 305 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~-i--~lP~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~ 305 (376)
..|..+|+++.+-.. + ..|..... .-..+.. .++.+.+.+.. +..+.+|.+.... ..+..+.....-..-+
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~sgs~--D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v 255 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTA-DVLSLSINSLNANMFISGSC--DTTVRLWDLRITS-RAVRTYHGHEGDINSV 255 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCS-CEEEEEECSSSCCEEEEEET--TSCEEEEETTTTC-CCCEEECCCSSCCCEE
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCcc-CeEEEEeecCCCCEEEEEEC--CCeEEEEECCCCC-cceEEECCcCCCeEEE
Confidence 368889998765433 2 22222211 1122222 25666666655 7899999987411 1122221122123345
Q ss_pred EEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 306 LFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 306 ~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
++.++|..++. ..++.+..||+++++...
T Consensus 256 ~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred EEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 66778876665 456779999999876443
No 187
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=49.36 E-value=1.4e+02 Score=26.37 Aligned_cols=194 Identities=13% Similarity=0.123 Sum_probs=93.8
Q ss_pred eecce-EEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGI-VFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gl-l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|- |+....+..+.|||..+++....-.. +... ...+.+.+.. .+ ++.. .....+
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----h~~~-----v~~~~~~p~~-~~-l~s~-----------s~d~~v 189 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQG----HEQD-----IYSLDYFPSG-DK-LVSG-----------SGDRTV 189 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSC-----EEEEEECTTS-SE-EEEE-----------ETTSEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc----CCCC-----EEEEEEcCCC-CE-EEEe-----------cCCCcE
Confidence 34554 44445577889999998875442111 1111 2356665543 22 2222 124578
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCC-CCC-Cc-e
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTL-ESS-LD-V 258 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~-~~~-~~-~ 258 (376)
.+++.+++.-...-... .....+.+ +|.+...+.. ...|..+|+++.... .+..+... ..+ .. .
T Consensus 190 ~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~s~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~ 260 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIE----DGVTTVAVSPGDGKYIAAGSL-----DRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260 (393)
T ss_dssp EEEETTTTEEEEEEECS----SCEEEEEECSTTCCEEEEEET-----TSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred EEEECCCCeeEEEEEcC----CCcEEEEEECCCCCEEEEEcC-----CCcEEEEECCCCcEEEeecccccCCCCCCCCEE
Confidence 88888887543211110 01112222 4444433332 236888998876542 23222111 111 11 2
Q ss_pred eEEEe-cCeEEEEEecCCCCEEEEEEeCCCc----------eeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEe
Q 048178 259 TLGIY-DQSLSLLLLDTVDHCFKIWVMQKKN----------WIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYE 326 (376)
Q Consensus 259 ~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~----------W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd 326 (376)
.+... +|.+.+.... +..+.||.+.... ......+........-+++..++..++. ..++.+..||
T Consensus 261 ~v~~~~~g~~l~s~s~--d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSL--DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EEEECTTSSEEEEEET--TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEEECCCCCEEEEEeC--CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 23333 5555554444 7899999987611 1111111011112333555667776655 5678899999
Q ss_pred CCCCcEE
Q 048178 327 PGTGELR 333 (376)
Q Consensus 327 ~~t~~~~ 333 (376)
.++++..
T Consensus 339 ~~~~~~~ 345 (393)
T 1erj_A 339 KKSGNPL 345 (393)
T ss_dssp TTTCCEE
T ss_pred CCCCeEE
Confidence 9988643
No 188
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=48.95 E-value=1.2e+02 Score=25.69 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=40.7
Q ss_pred eEEEEEecCCCCEEEEEEeCC---CceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCC-CCcEEEEE
Q 048178 266 SLSLLLLDTVDHCFKIWVMQK---KNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPG-TGELRDFE 336 (376)
Q Consensus 266 ~L~l~~~~~~~~~l~vW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~-t~~~~~v~ 336 (376)
.+.+.... +..+.||.+++ ..|.....- .......-+++.++|.++.. ..++.+..|+.. .+.|+.+.
T Consensus 229 ~~las~s~--D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~ 301 (316)
T 3bg1_A 229 STIASCSQ--DGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCIS 301 (316)
T ss_dssp CEEEEEET--TCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEE
T ss_pred ceEEEEcC--CCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEee
Confidence 34444434 78999999876 446432111 12222344566677876654 567778899876 45677664
No 189
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=48.79 E-value=1.4e+02 Score=26.20 Aligned_cols=156 Identities=9% Similarity=-0.002 Sum_probs=81.9
Q ss_pred EEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCC
Q 048178 152 IGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDN 228 (376)
Q Consensus 152 ~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~ 228 (376)
.++.+|+..+. |.... .....+..++..+..-+.+... .. ....++.+ +|.+||....
T Consensus 76 ~~l~~d~~~~~--ly~~D----------~~~~~I~r~~~~g~~~~~~~~~--~~-~~p~glavd~~~g~ly~~d~~---- 136 (349)
T 3v64_C 76 IALDFHHRREL--VFWSD----------VTLDRILRANLNGSNVEEVVST--GL-ESPGGLAVDWVHDKLYWTDSG---- 136 (349)
T ss_dssp EEEEEETTTTE--EEEEE----------TTTTEEEEEETTSCSCEEEECS--SC-SCCCEEEEETTTTEEEEEETT----
T ss_pred EEEEEeccccE--EEEEe----------ccCCceEEEecCCCCceEEEeC--CC-CCccEEEEecCCCeEEEEcCC----
Confidence 57888876553 22221 1245677777776654443211 11 11234444 6899998754
Q ss_pred CccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEE
Q 048178 229 DNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLL 306 (376)
Q Consensus 229 ~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~ 306 (376)
...|..+|+....-..+. ..... ....+++- +|.|+..... ....+....++.. -. ..+. ...+..|-+
T Consensus 137 -~~~I~~~~~dG~~~~~l~-~~~l~--~P~~iavdp~~g~ly~td~~-~~~~I~r~~~dG~-~~--~~~~-~~~~~~PnG 207 (349)
T 3v64_C 137 -TSRIEVANLDGAHRKVLL-WQSLE--KPRAIALHPMEGTIYWTDWG-NTPRIEASSMDGS-GR--RIIA-DTHLFWPNG 207 (349)
T ss_dssp -TTEEEEEETTSCSCEEEE-CTTCS--CEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC-SC--EESC-CSSCSCEEE
T ss_pred -CCeEEEEcCCCCceEEEE-eCCCC--CcceEEEecCcCeEEEeccC-CCCEEEEEeCCCC-Cc--EEEE-ECCCCCcce
Confidence 347899998765433332 11111 11345554 5678877763 1256665555542 11 1110 112344544
Q ss_pred E--e-eCCcEEEEEc-CCeEEEEeCCCCcEEEE
Q 048178 307 F--W-KKGAFFVESN-SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 307 ~--~-~~g~i~~~~~-~~~~~~yd~~t~~~~~v 335 (376)
+ . .++.||+... .+.+..+|+.+...+.+
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 4 3 2566777753 56788999887654443
No 190
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=47.71 E-value=63 Score=28.67 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=20.4
Q ss_pred eCCcEEEEEcCCeEEEEeCCCCcEEEE
Q 048178 309 KKGAFFVESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 309 ~~g~i~~~~~~~~~~~yd~~t~~~~~v 335 (376)
.+|.+|+...+++++..|++|++...-
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 356677777788899999998876543
No 191
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=45.20 E-value=1.9e+02 Score=26.86 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=41.8
Q ss_pred cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCc---eeeeEEEeeC-CcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 264 DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIG---IFQPLLFWKK-GAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 ~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~---~~~~~~~~~~-g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
+|. +.+.... +..+.+|.++. ...+..+..... ...-+++.++ |+.++. ..++.+..||+++++..
T Consensus 171 ~~~~~l~~~~~--d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 171 SRPMRSMTVGD--DGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp SSSCEEEEEET--TTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred CCCcEEEEEeC--CCcEEEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe
Confidence 444 4444444 78999998776 445555532222 2344566667 776654 56788999999887644
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=45.04 E-value=2.2e+02 Score=27.53 Aligned_cols=143 Identities=16% Similarity=0.071 Sum_probs=74.8
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce---EeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK---FQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~---~~~i~lP~~~~~~~~~ 258 (376)
...+.+.+..++.|+.+..... .....+..+|.+|.....+. ....|..+|+++.. |..+-.+.... .-.
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~---~~~~~~~~~g~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~l~ 323 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVG---AKYEVHAWKDRFYVLTDEGA--PRQRVFEVDPAKPARASWKEIVPEDSSA--SLL 323 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSS---CCEEEEEETTEEEEEECTTC--TTCEEEEEBTTBCSGGGCEEEECCCSSC--EEE
T ss_pred ceEEEEEcCCCCceEEeecCCC---ceEEEEecCCcEEEEECCCC--CCCEEEEEeCCCCCccCCeEEecCCCCC--eEE
Confidence 3455555555667877653211 11123445777655543221 14689999987643 66553222111 012
Q ss_pred eEEEecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCC--ceeeeEEEeeCCc-EEEEEc----CCeEEEEeCCCC
Q 048178 259 TLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFI--GIFQPLLFWKKGA-FFVESN----SSQLLLYEPGTG 330 (376)
Q Consensus 259 ~l~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~--~~~~~~~~~~~g~-i~~~~~----~~~~~~yd~~t~ 330 (376)
.+...++.|.+.... .....||+++- +. ....+ +++ .....+++..+++ +++... ...++.||++++
T Consensus 324 ~~~~~~~~lv~~~~~--dg~~~l~~~~~~g~--~~~~l-~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 324 SVSIVGGHLSLEYLK--DATSEVRVATLKGK--PVRTV-QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEEETTEEEEEEEE--TTEEEEEEEETTCC--EEEEC-CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEECCEEEEEEEE--CCEEEEEEEeCCCC--eeEEe-cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 233447777776665 56677777763 22 33444 332 1122223334554 554432 356999999998
Q ss_pred cEEEEE
Q 048178 331 ELRDFE 336 (376)
Q Consensus 331 ~~~~v~ 336 (376)
+.+.+.
T Consensus 399 ~~~~l~ 404 (695)
T 2bkl_A 399 KSELWA 404 (695)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 876653
No 193
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=44.94 E-value=1.4e+02 Score=25.08 Aligned_cols=100 Identities=6% Similarity=-0.035 Sum_probs=55.3
Q ss_pred ccEEEEEECCCceEe-eecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCc----ee
Q 048178 230 NYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIG----IF 302 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~----~~ 302 (376)
...|..+|+.+.+.. .+.++..... ...+... +|+ +++.... ...+.+|.++..+-.....+ +... ..
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~ 84 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPT--PMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDL-STPEERVKSL 84 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTC--CCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEEC-CBTTEEEECT
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCC--ccceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeEeeEEc-CCcccccccc
Confidence 347889999886553 4455542100 1233333 554 5554433 67888888876443332332 1100 12
Q ss_pred eeEEEeeCCc-EEEEE------------cCCeEEEEeCCCCcEEE
Q 048178 303 QPLLFWKKGA-FFVES------------NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 303 ~~~~~~~~g~-i~~~~------------~~~~~~~yd~~t~~~~~ 334 (376)
.-+++.++|+ +++.. .++.+..||+++++...
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 2356666776 44443 35789999999886543
No 194
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=44.37 E-value=1.5e+02 Score=25.20 Aligned_cols=138 Identities=10% Similarity=0.103 Sum_probs=79.7
Q ss_pred cceEEEEEcCCCce-EeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce-EeeecCCCCCCCCCcee
Q 048178 182 FSLVTVYNLSTNSW-RNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK-FQEIQGPCTLESSLDVT 259 (376)
Q Consensus 182 ~~~~~vyss~t~~W-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~-~~~i~lP~~~~~~~~~~ 259 (376)
...+.+++.+|++= +.++ ++. ......-...++.+|-+... ...+.+||.++.+ ...++.|... ..
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~-l~~-~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~~t~~~~~ti~~~~eG-----~g 131 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIE-LGK-RYFGEGISDWKDKIVGLTWK-----NGLGFVWNIRNLRQVRSFNYDGEG-----WG 131 (262)
T ss_dssp EEEEEEECTTTCCEEEEEE-CCT-TCCEEEEEEETTEEEEEESS-----SSEEEEEETTTCCEEEEEECSSCC-----CC
T ss_pred CceEEEEECCCCcEEEEEe-cCC-ccceeEEEEeCCEEEEEEee-----CCEEEEEECccCcEEEEEECCCCc-----eE
Confidence 45889999999853 3332 211 11111134557788877654 3489999998754 4566765421 23
Q ss_pred EEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee------EEEeeCCcEEEEE-cCCeEEEEeCCCCcE
Q 048178 260 LGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP------LLFWKKGAFFVES-NSSQLLLYEPGTGEL 332 (376)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~------~~~~~~g~i~~~~-~~~~~~~yd~~t~~~ 332 (376)
++.-++.|++... .. .||.++...=..+.+| +...-..| +.. .+|+|+... ..+.+...|++|++.
T Consensus 132 lt~dg~~L~~SdG---s~--~i~~iDp~T~~v~~~I-~V~~~g~~~~~lNELe~-~~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 132 LTHNDQYLIMSDG---TP--VLRFLDPESLTPVRTI-TVTAHGEELPELNELEW-VDGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp EEECSSCEEECCS---SS--EEEEECTTTCSEEEEE-ECEETTEECCCEEEEEE-ETTEEEEEETTSSEEEEECTTTCBE
T ss_pred EecCCCEEEEECC---CC--eEEEEcCCCCeEEEEE-EeccCCccccccceeEE-ECCEEEEEEccCCeEEEEECCCCcE
Confidence 3433444666543 22 4777776444445555 33211112 232 378888765 467899999999986
Q ss_pred E-EEEEe
Q 048178 333 R-DFELE 338 (376)
Q Consensus 333 ~-~v~~~ 338 (376)
. ++...
T Consensus 205 ~~~Id~~ 211 (262)
T 3nol_A 205 TGIIDLN 211 (262)
T ss_dssp EEEEECT
T ss_pred EEEEECC
Confidence 5 46653
No 195
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=43.62 E-value=1.7e+02 Score=25.63 Aligned_cols=193 Identities=11% Similarity=0.030 Sum_probs=93.9
Q ss_pred eecceEE-Eee--cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 107 LYCGIVF-IEG--LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 107 s~~Gll~-~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
|-+|-++ +.. .+..+.|||+.|++.+....... . ...+.+.|.. .+ ++... ..
T Consensus 142 SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~----~------V~~v~fspdg-~~--l~s~s-----------~~ 197 (365)
T 4h5i_A 142 SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG----E------VKDLHFSTDG-KV--VAYIT-----------GS 197 (365)
T ss_dssp CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS----C------CCEEEECTTS-SE--EEEEC-----------SS
T ss_pred cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC----c------eEEEEEccCC-ce--EEecc-----------ce
Confidence 4566433 332 35778999999988765432211 1 1234454432 22 22211 22
Q ss_pred eEEEEEcCCCceEeccccCcc-ccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee---cCCCCCCCCCcee
Q 048178 184 LVTVYNLSTNSWRNLKSIDYT-MRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI---QGPCTLESSLDVT 259 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~lP~~~~~~~~~~ 259 (376)
.+.++...++.-......... .....-...-+|.....+..+.+ ....+..+|......... .+..... .-..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~V~~ 274 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG-KGIVLTKISIKSGNTSVLRSKQVTNRFK--GITS 274 (365)
T ss_dssp CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS-CCEEEEEEEEETTEEEEEEEEEEESSCS--CEEE
T ss_pred eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc-ceeEEeecccccceecceeeeeecCCCC--CeEe
Confidence 455666655543221101000 00100012235555544433321 123456666665544332 1211111 1122
Q ss_pred EEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECC-CCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCC
Q 048178 260 LGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGP-FIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTG 330 (376)
Q Consensus 260 l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~ 330 (376)
+... +|++.+.... +..+.||.++. ...+.++.. ...-..-+++.++|..++. ..++.+-++|+.++
T Consensus 275 ~~~Spdg~~lasgs~--D~~V~iwd~~~--~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 275 MDVDMKGELAVLASN--DNSIALVKLKD--LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEET--TSCEEEEETTT--TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCceEEEcC--CCEEEEEECCC--CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3332 6665555544 78899999886 344555411 1222455777889998776 56788999997644
No 196
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=43.21 E-value=1.5e+02 Score=25.00 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=44.0
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCc-eeeEEEECCCCceeeeEEEeeCCc-EEE-EEcCCeEEEEeC-CCCcEEEEEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKN-WIKQSSVGPFIGIFQPLLFWKKGA-FFV-ESNSSQLLLYEP-GTGELRDFEL 337 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~-W~~~~~i~~~~~~~~~~~~~~~g~-i~~-~~~~~~~~~yd~-~t~~~~~v~~ 337 (376)
+|.+.++... +..+.||.++... -.....+.....-..-+++.+++. .++ ...++.+..||+ ++++...+.-
T Consensus 22 ~~~~l~~~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 22 SKSLLLITSW--DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp GGTEEEEEET--TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred CCCEEEEEcC--CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccc
Confidence 4555555544 6899999998833 222221112222234456666787 554 456788999999 9888766643
No 197
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=42.62 E-value=1.5e+02 Score=24.89 Aligned_cols=95 Identities=13% Similarity=0.074 Sum_probs=57.6
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK 309 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (376)
..|..+|+.+.+.......... .-..+... +|++.+.... +..+.||.+.. +..+..+ ........+++.+
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~s~--Dg~i~iwd~~~--~~~~~~~-~~~~~v~~~~~~~ 266 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTG---YLNTVTVSPDGSLCASGGK--DGQAMLWDLNE--GKHLYTL-DGGDIINALCFSP 266 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSS---CEEEEEECTTSSEEEEEET--TCEEEEEETTT--TEEEEEE-ECSSCEEEEEECS
T ss_pred CEEEEEECCCCceeeEecCCCC---cEEEEEECCCCCEEEEEeC--CCeEEEEEecc--Cceeeee-cCCceEEeeecCC
Confidence 3688889888765433221111 11233332 5666655554 78999998876 3444444 2322344455566
Q ss_pred CCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 310 KGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 310 ~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
++.++....++.+..||++++...
T Consensus 267 ~~~~~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 267 NRYWLCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEE
T ss_pred CCceeeccCCCEEEEEECCCCeEE
Confidence 777877777888999999987543
No 198
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=42.34 E-value=1.7e+02 Score=25.29 Aligned_cols=142 Identities=6% Similarity=-0.026 Sum_probs=70.0
Q ss_pred cceEEEEEcCC--CceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCc
Q 048178 182 FSLVTVYNLST--NSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLD 257 (376)
Q Consensus 182 ~~~~~vyss~t--~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~ 257 (376)
.....+|-+.. .+|+.+... ... ...+|.. ++.+|. ... ...|+.-+-..++|+.+..+.......-
T Consensus 12 ~~~~~~~~s~d~g~~W~~~~~~-~~~--~~~~v~~~~~~~~~~-~G~-----~g~i~~s~DgG~tW~~~~~~~~~~~~~~ 82 (327)
T 2xbg_A 12 LVPRGSAIPALDYNPWEAIQLP-TTA--TILDMSFIDRHHGWL-VGV-----NATLMETRDGGQTWEPRTLVLDHSDYRF 82 (327)
T ss_dssp ------CCCBCSSCCEEEEECS-CSS--CEEEEEESSSSCEEE-EET-----TTEEEEESSTTSSCEECCCCCSCCCCEE
T ss_pred ccccceeecCCCCCCceEeecC-CCC--cEEEEEECCCCcEEE-EcC-----CCeEEEeCCCCCCCeECCCCCCCCCccE
Confidence 34555666654 479988632 111 1234444 334443 332 2245555445678998865432111111
Q ss_pred eeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEE
Q 048178 258 VTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 258 ~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v 335 (376)
..+...++.++++... . .|+.-++ ..|.++.....++.-..-+.+..++.+++....+.++.-.-..++|+++
T Consensus 83 ~~i~~~~~~~~~~g~~---g--~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~ 157 (327)
T 2xbg_A 83 NSVSFQGNEGWIVGEP---P--IMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQAL 157 (327)
T ss_dssp EEEEEETTEEEEEEET---T--EEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEE
T ss_pred EEEEecCCeEEEEECC---C--eEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEe
Confidence 2344445667766542 2 5667666 8899876431122111223344567777766555455544456678887
Q ss_pred EE
Q 048178 336 EL 337 (376)
Q Consensus 336 ~~ 337 (376)
..
T Consensus 158 ~~ 159 (327)
T 2xbg_A 158 VQ 159 (327)
T ss_dssp EC
T ss_pred ec
Confidence 53
No 199
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=42.09 E-value=1.5e+02 Score=24.73 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=23.6
Q ss_pred eeeEEEeeCCcEEEE-EcCCeEEEEeCCCC-cEEEEE
Q 048178 302 FQPLLFWKKGAFFVE-SNSSQLLLYEPGTG-ELRDFE 336 (376)
Q Consensus 302 ~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~-~~~~v~ 336 (376)
..-+++..+|.+++. ..++.+..||++++ .++.+.
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 334555667775554 56788999999886 566554
No 200
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=41.74 E-value=1.6e+02 Score=24.92 Aligned_cols=136 Identities=10% Similarity=0.001 Sum_probs=70.0
Q ss_pred cceEEEEEcCCCc--eEeccccCccccCCCCeEE------ECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCC
Q 048178 182 FSLVTVYNLSTNS--WRNLKSIDYTMRLSSERTY------FDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTL 252 (376)
Q Consensus 182 ~~~~~vyss~t~~--W~~~~~~~~~~~~~~~~v~------~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~ 252 (376)
...+.+|+.+++. .+.+.............+. -+|.+...+.. ...|..+|+.+...... ..+.
T Consensus 138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~-- 210 (357)
T 3i2n_A 138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----NGDIKLFDLRNMALRWETNIKN-- 210 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----TSEEEEEETTTTEEEEEEECSS--
T ss_pred CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----CCeEEEEECccCceeeecCCCC--
Confidence 4478888887754 3333211111011111222 35555444433 34799999988765333 2111
Q ss_pred CCCCceeEEEe----cCeEEEEEecCCCCEEEEEEeCC----CceeeEEEECCCCceeeeEEEeeCCc-EEEE-EcCCeE
Q 048178 253 ESSLDVTLGIY----DQSLSLLLLDTVDHCFKIWVMQK----KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SNSSQL 322 (376)
Q Consensus 253 ~~~~~~~l~~~----~g~L~l~~~~~~~~~l~vW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~~~~~ 322 (376)
.-..+... +|...++... +..+.+|.+.. ...... .+........-+.+.+++. +++. ..++.+
T Consensus 211 ---~v~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 211 ---GVCSLEFDRKDISMNKLVATSL--EGKFHVFDMRTQHPTKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp ---CEEEEEESCSSSSCCEEEEEES--TTEEEEEEEEEEETTTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred ---ceEEEEcCCCCCCCCEEEEECC--CCeEEEEeCcCCCcccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 11233333 4565555544 68899999876 222211 1111222234456666776 5544 567889
Q ss_pred EEEeCCCC
Q 048178 323 LLYEPGTG 330 (376)
Q Consensus 323 ~~yd~~t~ 330 (376)
..||+++.
T Consensus 285 ~iwd~~~~ 292 (357)
T 3i2n_A 285 HLWKYEYP 292 (357)
T ss_dssp EEEEEECC
T ss_pred EEeecCCC
Confidence 99998764
No 201
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=40.86 E-value=1.7e+02 Score=24.97 Aligned_cols=65 Identities=5% Similarity=-0.003 Sum_probs=37.0
Q ss_pred ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECC-CCc-eeeeEEEee--CCcEEEE-EcCCeEEEEeCCC
Q 048178 263 YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGP-FIG-IFQPLLFWK--KGAFFVE-SNSSQLLLYEPGT 329 (376)
Q Consensus 263 ~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~-~~~-~~~~~~~~~--~g~i~~~-~~~~~~~~yd~~t 329 (376)
..+.+.+.... +..+.||....++|........ ... ....+++.+ ++.+++. ..++.+..||+++
T Consensus 259 s~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 259 GFNGLIASVGA--DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CTTSCEEEEET--TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCEEEEEeC--CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 34444334433 7899999998888877655411 121 133345554 4666654 5678899999865
No 202
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=40.56 E-value=2.3e+02 Score=26.27 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=54.8
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeC
Q 048178 232 VILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKK 310 (376)
Q Consensus 232 ~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 310 (376)
.|..+|...+....+..... .-..+... ++++.+.... +..+.+|.++.. .+..+.....-..-+++.++
T Consensus 408 ~v~~~~~~~~~~~~~~~~~~----~v~~~~~s~d~~~l~~~~~--d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 408 TVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDDQTIASASD--DKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPD 478 (577)
T ss_dssp EEEEECTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEET--TSEEEEEETTSC---EEEEEECCSSCEEEEEECTT
T ss_pred EEEEEeCCCCEEEEecCCCC----CeEEEEECCCCCEEEEEcC--CCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCC
Confidence 67778876655444432111 11233333 4554444444 688999987642 22233122222344677778
Q ss_pred CcEEEE-EcCCeEEEEeCCCCcEEEEEE
Q 048178 311 GAFFVE-SNSSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 311 g~i~~~-~~~~~~~~yd~~t~~~~~v~~ 337 (376)
|++++. ..++.+..||..++..+.+.-
T Consensus 479 ~~~las~~~d~~i~iw~~~~~~~~~~~~ 506 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRNGQLLQTLTG 506 (577)
T ss_dssp SCEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred CCEEEEEeCCCEEEEEcCCCCEEEEEeC
Confidence 887665 567789999987776666543
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=39.48 E-value=2.7e+02 Score=26.96 Aligned_cols=143 Identities=12% Similarity=0.144 Sum_probs=73.0
Q ss_pred ceEEEEEcCCC--ceEeccccCccccCCCCeE-EECceEEEEeeecCCCCccEEEEEECCCc---eEeeecCCCCCCCCC
Q 048178 183 SLVTVYNLSTN--SWRNLKSIDYTMRLSSERT-YFDGAFYWLLKLENDNDNYVILSFHMAEE---KFQEIQGPCTLESSL 256 (376)
Q Consensus 183 ~~~~vyss~t~--~W~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~i~~fD~~~e---~~~~i~lP~~~~~~~ 256 (376)
..+.+.+..++ .|+.+..... .....+ .-++.+|+++..+. ....|+..|+++. .|+.+ .|.....
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~---~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l-~~~~~~~-- 330 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLD---ADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDL-IPERQQV-- 330 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSS---SCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEE-ECCCSSC--
T ss_pred cEEEEEECCCCCCceEEEeCCCC---ceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEE-ecCCCCE--
Confidence 46666776554 5666542211 111123 33567887765432 1468999998763 35654 2222211
Q ss_pred ceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-cEEEEEc----CCeEEEEeCCCCc
Q 048178 257 DVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-AFFVESN----SSQLLLYEPGTGE 331 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~----~~~~~~yd~~t~~ 331 (376)
..+...++.|.+...+.....+.+|.++ +.+.+...+ |.......+....++ .+++... ...++.||+++++
T Consensus 331 -~~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 331 -LTVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp -EEEEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred -EEEEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 2233334456666655333455666555 444433223 222112122222244 4666533 3679999999988
Q ss_pred EEEEE
Q 048178 332 LRDFE 336 (376)
Q Consensus 332 ~~~v~ 336 (376)
.+.+.
T Consensus 408 ~~~l~ 412 (693)
T 3iuj_A 408 ISLYR 412 (693)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
No 204
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=39.12 E-value=1.9e+02 Score=25.00 Aligned_cols=145 Identities=10% Similarity=-0.016 Sum_probs=74.2
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
...+.+++..++..+.+...... . ...... +|. +++............|..+|+.+.....+.-... .. ...
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~~~~--~-~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~-~~~ 241 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQDTAW--L-GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE-GE-SCT 241 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEESSC--E-EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT-TE-EEE
T ss_pred cceEEEEECCCCcEEeeccCCcc--c-ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC-Cc-ccc
Confidence 45677888888776655421110 0 011222 354 6665532110011468888987766554422110 00 011
Q ss_pred eEEEe-cCe-EEEEEecCCCCE--EEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEEE----------------
Q 048178 259 TLGIY-DQS-LSLLLLDTVDHC--FKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVES---------------- 317 (376)
Q Consensus 259 ~l~~~-~g~-L~l~~~~~~~~~--l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~---------------- 317 (376)
.+... +|+ |+++........ +.+|.++.++...+... +. .. ..+.. +|.+++..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~--~~--~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP--CS--HLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS--EE--EEEECSSSSEEEEEECCC----------CC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC--CC--CCccCCCCceEEEecCCcceeecccccccc
Confidence 22222 566 565555333344 67776665555444443 22 22 45566 78766542
Q ss_pred -cCCeEEEEeCCCCcEEEEE
Q 048178 318 -NSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 318 -~~~~~~~yd~~t~~~~~v~ 336 (376)
....++.+|+++++.+.+.
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCCCEEEEEETTTTBCCEEE
T ss_pred CCCCcEEEEecccCceEEcc
Confidence 2367999999998876664
No 205
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=38.75 E-value=1.8e+02 Score=24.51 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=21.3
Q ss_pred EEeeCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 048178 306 LFWKKGAFFVESNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 306 ~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~ 336 (376)
.+..+|.|++...++.++.||.+++.+....
T Consensus 221 ~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~ 251 (330)
T 3hxj_A 221 AISEDGTIYVTSLDGHLYAINPDGTEKWRFK 251 (330)
T ss_dssp EECTTSCEEEEETTTEEEEECTTSCEEEEEE
T ss_pred EECCCCeEEEEcCCCeEEEECCCCCEeEEee
Confidence 4455667888777777888887776665554
No 206
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=37.59 E-value=59 Score=23.56 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=28.4
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEE
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLIL 169 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 169 (376)
-.+++++|.|++|.. .... ... ..+.+..|+..+.|+|+...
T Consensus 11 A~V~~~d~~~~~W~p--~~~~---~g~----s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 11 AAVMVYDDANKKWVP--AGGS---TGF----SRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEEETTTTEEEE--GGGC---CSC----EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCceEE--CCCC---CCc----eEEEEEEECCCCEEEEEEEE
Confidence 357899999998854 3311 011 13678889888899999863
No 207
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=37.35 E-value=1.9e+02 Score=24.49 Aligned_cols=95 Identities=8% Similarity=-0.036 Sum_probs=50.5
Q ss_pred cEEEEEECCC-ce-EeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEE
Q 048178 231 YVILSFHMAE-EK-FQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLF 307 (376)
Q Consensus 231 ~~i~~fD~~~-e~-~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (376)
..|..+|+.+ .. ...+..... .-..+... +|.+.++... +..+.+|.++..+-...... ..-...+.+
T Consensus 197 g~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~ 267 (369)
T 3zwl_B 197 GKISKYDVSNNYEYVDSIDLHEK----SISDMQFSPDLTYFITSSR--DTNSFLVDVSTLQVLKKYET---DCPLNTAVI 267 (369)
T ss_dssp SEEEEEETTTTTEEEEEEECCSS----CEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEEC---SSCEEEEEE
T ss_pred CEEEEEECCCCcEeEEEEecCCC----ceeEEEECCCCCEEEEecC--CceEEEEECCCCceeeeecC---CCCceeEEe
Confidence 4789999987 33 233332111 11223332 5555555544 67899999887433333322 111333455
Q ss_pred eeCCcEEEE-EcCC--------------eEEEEeCCCCcEEE
Q 048178 308 WKKGAFFVE-SNSS--------------QLLLYEPGTGELRD 334 (376)
Q Consensus 308 ~~~g~i~~~-~~~~--------------~~~~yd~~t~~~~~ 334 (376)
..++..++. ...+ .+..||.++++...
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 556664443 3332 68899988876543
No 208
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=36.88 E-value=2e+02 Score=24.61 Aligned_cols=193 Identities=9% Similarity=0.023 Sum_probs=98.1
Q ss_pred eeecceEEEeec-CCeEEEEecCc----cc-eeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCC
Q 048178 106 GLYCGIVFIEGL-NNRITLWNIAT----RE-SVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179 (376)
Q Consensus 106 ~s~~Gll~~~~~-~~~~~V~NP~T----~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 179 (376)
+..+|.|...+. ...++..++.+ .. ...++.. .. . ..++++|+..+. +... .
T Consensus 38 d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~--~-------p~glavd~~~~~--ly~~------d---- 95 (316)
T 1ijq_A 38 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQ--A-------PDGLAVDWIHSN--IYWT------D---- 95 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CS--C-------CCEEEEETTTTE--EEEE------E----
T ss_pred EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC-CC--C-------cCEEEEeecCCe--EEEE------E----
Confidence 344677776664 46778888876 22 2222211 00 0 236777765443 2121 1
Q ss_pred CCcceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCC
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSL 256 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~ 256 (376)
.....++++++.+..=+.+... .. ....++.+ +|.+||..... ...|..+|+....-..+-.. .. ..
T Consensus 96 ~~~~~I~~~~~~g~~~~~~~~~--~~-~~P~~iavdp~~g~ly~~d~~~----~~~I~~~~~dG~~~~~~~~~-~~--~~ 165 (316)
T 1ijq_A 96 SVLGTVSVADTKGVKRKTLFRE--NG-SKPRAIVVDPVHGFMYWTDWGT----PAKIKKGGLNGVDIYSLVTE-NI--QW 165 (316)
T ss_dssp TTTTEEEEEETTSSSEEEEEEC--TT-CCEEEEEEETTTTEEEEEECSS----SCEEEEEETTSCCEEEEECS-SC--SC
T ss_pred CCCCEEEEEeCCCCceEEEEEC--CC-CCcceEEeCCCCCEEEEEccCC----CCeEEEEcCCCCCeEEEEEC-CC--CC
Confidence 1245777888776533332211 01 11124444 68999976432 24799999875544433111 11 11
Q ss_pred ceeEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeE-EEECCCCceeeeEEEee-CCcEEEEE-cCCeEEEEeCCCCc
Q 048178 257 DVTLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQ-SSVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 257 ~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~-~~i~~~~~~~~~~~~~~-~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
...++.- ++.|+++... ...+.+..++.. -.+. ... ...+..|.++.- ++.+|+.. ..+++..+|+.+++
T Consensus 166 P~gla~d~~~~~lY~~D~~--~~~I~~~d~dg~-~~~~~~~~--~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSK--LHSISSIDVNGG-NRKTILED--EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEEETTTTEEEEEETT--TTEEEEEETTSC-SCEEEEEC--TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEEeccCCEEEEEECC--CCeEEEEecCCC-ceEEEeec--CCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 2345554 5678887764 567777666642 2222 221 112345555543 46677765 45789999986654
Q ss_pred -EEEE
Q 048178 332 -LRDF 335 (376)
Q Consensus 332 -~~~v 335 (376)
.+.+
T Consensus 241 ~~~~i 245 (316)
T 1ijq_A 241 DVNLL 245 (316)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 4454
No 209
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=36.72 E-value=2.1e+02 Score=24.77 Aligned_cols=136 Identities=4% Similarity=-0.076 Sum_probs=73.7
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
...+.+|+..++.....-...... ....++.+ +|.+...+.. ...|..+|+++.....+........ .-.
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~-~v~ 167 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPG-DAITGMKFNQFNTNQLFVSSI-----RGATTLRDFSGSVIQVFAKTDSWDY-WYC 167 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTT-CBEEEEEEETTEEEEEEEEET-----TTEEEEEETTSCEEEEEECCCCSSC-CEE
T ss_pred CCeEEEEeCCCcccceeeecCCcC-CceeEEEeCCCCCCEEEEEeC-----CCEEEEEECCCCceEEEeccCCCCC-CeE
Confidence 457889999887665432211000 11123333 3343333332 3478999999877766644332221 112
Q ss_pred eEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-EcCCeEEEEeCCC
Q 048178 259 TLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SNSSQLLLYEPGT 329 (376)
Q Consensus 259 ~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~~~~~~~yd~~t 329 (376)
.+... +|...+.... +..+.+|.++.. .+..+........-+++.+++. +++. ..++.+..||+++
T Consensus 168 ~~~~~~~~~~l~~~~~--d~~i~i~d~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 168 CVDVSVSRQMLATGDS--TGRLLLLGLDGH---EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp EEEEETTTTEEEEEET--TSEEEEEETTSC---EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred EEEECCCCCEEEEECC--CCCEEEEECCCC---EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 33333 5555555544 789999998542 2233311222234456666776 5554 5677899999987
No 210
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=36.53 E-value=3e+02 Score=26.51 Aligned_cols=181 Identities=19% Similarity=0.156 Sum_probs=83.8
Q ss_pred ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCce
Q 048178 116 GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSW 195 (376)
Q Consensus 116 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W 195 (376)
..+..+.|||...+....+....... ... ...+.+.+....-.++... ....+.+++.+++.-
T Consensus 491 s~D~~i~iwd~~~~~~~~~~~~~~~h-~~~-----v~~~~~~~~~~~~~l~s~s-----------~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 491 SRDRTIKLWNTLGECKYTISEGGEGH-RDW-----VSCVRFSPNTLQPTIVSAS-----------WDKTVKVWNLSNCKL 553 (694)
T ss_dssp ETTSCEEEECTTSCEEEEECSSTTSC-SSC-----EEEEEECSCSSSCEEEEEE-----------TTSCEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeeccCCCCC-CCc-----EEEEEEeCCCCcceEEEEe-----------CCCeEEEEECCCCcE
Confidence 34566788887655444443221111 111 2345555544332333321 245788888887643
Q ss_pred Ee-ccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEe
Q 048178 196 RN-LKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLL 272 (376)
Q Consensus 196 ~~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~ 272 (376)
.. +.... ....++.+ +|.+...+.. ...|..+|+.+.+-.. .+.... ....+.-..+...++..
T Consensus 554 ~~~~~~h~----~~v~~v~~spdg~~l~sg~~-----Dg~i~iwd~~~~~~~~-~~~~~~---~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 554 RSTLAGHT----GYVSTVAVSPDGSLCASGGK-----DGVVLLWDLAEGKKLY-SLEANS---VIHALCFSPNRYWLCAA 620 (694)
T ss_dssp EEEECCCS----SCEEEEEECTTSSEEEEEET-----TSBCEEEETTTTEEEE-CCBCSS---CEEEEEECSSSSEEEEE
T ss_pred EEEEcCCC----CCEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCceEE-EecCCC---cEEEEEEcCCCcEEEEE
Confidence 22 21110 01112222 4554333332 3368889988765321 221111 11233333333333333
Q ss_pred cCCCCEEEEEEeCCCceeeEEEEC------------CCC---c--eeeeEEEeeCCcEEEE-EcCCeEEEEeCC
Q 048178 273 DTVDHCFKIWVMQKKNWIKQSSVG------------PFI---G--IFQPLLFWKKGAFFVE-SNSSQLLLYEPG 328 (376)
Q Consensus 273 ~~~~~~l~vW~l~~~~W~~~~~i~------------~~~---~--~~~~~~~~~~g~i~~~-~~~~~~~~yd~~ 328 (376)
. ...+.||.++..+=....... +.. . ...-+++..+|..++. ..++.+.+||+.
T Consensus 621 ~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 T--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp E--TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred c--CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 3 456999998873222211110 000 0 0223455668887765 567888888875
No 211
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=36.01 E-value=3.9e+02 Score=27.77 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=96.6
Q ss_pred eecc-eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCG-IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+| +++....+..+.|||..|++....-... ... ...+.+.+..+...++... ....+
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----~~~-----v~~~~~~~~~~~~~l~sg~-----------~d~~v 725 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH----SEQ-----VNCCHFTNKSNHLLLATGS-----------NDFFL 725 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC----SSC-----EEEEEECSSSSCCEEEEEE-----------TTSCE
T ss_pred ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC----CCc-----EEEEEEecCCCceEEEEEe-----------CCCeE
Confidence 3344 4444455778999999998755421111 111 2345555544443333321 24568
Q ss_pred EEEEcCCCceEe-ccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCC--------
Q 048178 186 TVYNLSTNSWRN-LKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLE-------- 253 (376)
Q Consensus 186 ~vyss~t~~W~~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~-------- 253 (376)
.+++.+++.-.. +.... ....++.+ +|.....+.. ...|..+|+.+..-. .+..+....
T Consensus 726 ~vwd~~~~~~~~~~~~h~----~~v~~~~~sp~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1249)
T 3sfz_A 726 KLWDLNQKECRNTMFGHT----NSVNHCRFSPDDELLASCSA-----DGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796 (1249)
T ss_dssp EEEETTSSSEEEEECCCS----SCEEEEEECSSTTEEEEEES-----SSEEEEEEGGGTEEEEEEECCCCC--------C
T ss_pred EEEECCCcchhheecCCC----CCEEEEEEecCCCEEEEEEC-----CCeEEEEeCCCCcccceecccccccccCCcccc
Confidence 888888775332 11110 00112222 3443333322 237888888765432 222221110
Q ss_pred -CCCceeEE-EecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCC
Q 048178 254 -SSLDVTLG-IYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTG 330 (376)
Q Consensus 254 -~~~~~~l~-~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~ 330 (376)
......+. .-+|+..++.. ...+.+|.+........... ....-...+++..+|.+++. ..++.+..||.+++
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~---~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~ 872 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAA---KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEE---TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred ccceEEEEEECCCCCEEEEEc---CCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence 00001111 12555554444 46788998887444443332 22222344566777776655 45677999999987
Q ss_pred cEE
Q 048178 331 ELR 333 (376)
Q Consensus 331 ~~~ 333 (376)
+..
T Consensus 873 ~~~ 875 (1249)
T 3sfz_A 873 LKV 875 (1249)
T ss_dssp EEE
T ss_pred cee
Confidence 543
No 212
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.67 E-value=34 Score=22.70 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.4
Q ss_pred EEEEEcCCeEEEEeCCCCc
Q 048178 313 FFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 313 i~~~~~~~~~~~yd~~t~~ 331 (376)
..+...++++|+||..|++
T Consensus 23 ~~v~T~dGR~fyyN~~Tk~ 41 (73)
T 2dk7_A 23 CVVWTGDERVFFYNPTTRL 41 (73)
T ss_dssp EEEEESSSCEEEEETTTTE
T ss_pred EEEECCCCCEEEecCcccc
Confidence 4455678999999999985
No 213
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=33.59 E-value=70 Score=23.54 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=27.4
Q ss_pred CeEEEEecCcc-ceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEE
Q 048178 119 NRITLWNIATR-ESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI 168 (376)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 168 (376)
-.+++.||.|+ .|+..-... ..+.+-+|+..+.|+|+.+
T Consensus 11 A~V~~~D~~tk~~W~p~g~~~-----------~~V~~~~d~~~~~yRIv~~ 50 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSKHA-----------VTVSYFYDSTRNVYRIISL 50 (120)
T ss_dssp EEEEEECTTTSCSEEESCSSC-----------EEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCCCc-----------eEEEEEEcCCCCEEEEEEc
Confidence 35789999996 995532221 1356778888889999885
No 214
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=33.02 E-value=2.4e+02 Score=24.89 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=41.5
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECC-CCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGP-FIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
+|.+.+.... +..+.+|.+...+=...... + ......-+++.+++..++. ..++.+..||+++++..
T Consensus 181 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 181 EKSLLVALTN--LSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp SCEEEEEEET--TSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEeC--CCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 3555555544 78999999987333222222 1 2222444566667776654 56778999999987653
No 215
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=32.66 E-value=2.3e+02 Score=24.15 Aligned_cols=177 Identities=9% Similarity=0.034 Sum_probs=88.1
Q ss_pred eEEEEecCccceeec-CCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCC----Cc
Q 048178 120 RITLWNIATRESVTL-PKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLST----NS 194 (376)
Q Consensus 120 ~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t----~~ 194 (376)
.+.+.++.+++...+ |... ...++.+|+..+. |.... .....+..++..+ ..
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~-----------~p~g~~~d~~~~~--ly~~D----------~~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLR-----------NVVALDTEVASNR--IYWSD----------LSQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp SEEEEETTSCCCEEEECSCS-----------SEEEEEEETTTTE--EEEEE----------TTTTEEEEEEC--------
T ss_pred eEEEEECCCcceEehhcCCC-----------ceEEEEEEeCCCE--EEEEE----------CCCCcEEEEECCCCCCCcc
Confidence 456677776654443 3211 1357888866553 22221 1245677777665 22
Q ss_pred eEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--cCeEEE
Q 048178 195 WRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY--DQSLSL 269 (376)
Q Consensus 195 W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~--~g~L~l 269 (376)
-+.+- .... ....++.+ +|.+||.... ...|..+|+....-..+- ..... ....+++- +|.|+.
T Consensus 68 ~~~~~--~~~~-~~p~glavd~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~-~~~~~--~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 68 YDTVI--SRDI-QAPDGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLF-RENGS--KPRAIVVDPVHGFMYW 136 (316)
T ss_dssp CEEEE--CSSC-SCCCEEEEETTTTEEEEEETT-----TTEEEEEETTSSSEEEEE-ECTTC--CEEEEEEETTTTEEEE
T ss_pred cEEEE--eCCC-CCcCEEEEeecCCeEEEEECC-----CCEEEEEeCCCCceEEEE-ECCCC--CcceEEeCCCCCEEEE
Confidence 22211 1011 11234443 6899998654 347889998765443331 11111 11345553 567887
Q ss_pred EEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEE--ee-CCcEEEEEc-CCeEEEEeCCCCcEEEE
Q 048178 270 LLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLF--WK-KGAFFVESN-SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 270 ~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~--~~-~g~i~~~~~-~~~~~~yd~~t~~~~~v 335 (376)
.... ....+....++. +-.+.. + . ..+..|-++ .. ++.||+... .+.+..+|+++...+.+
T Consensus 137 ~d~~-~~~~I~~~~~dG-~~~~~~-~-~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 137 TDWG-TPAKIKKGGLNG-VDIYSL-V-T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EECS-SSCEEEEEETTS-CCEEEE-E-C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EccC-CCCeEEEEcCCC-CCeEEE-E-E-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 7652 124555555553 222221 1 1 123345444 32 456777754 46799999987665555
No 216
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=32.63 E-value=3.3e+02 Score=25.89 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCeEEECceEEEEeeecCCCCccEEEEEECCC--ceEeee-cCCCCCCC---CCceeEEEecCeEEEEEecCCCCEEEEE
Q 048178 209 SERTYFDGAFYWLLKLENDNDNYVILSFHMAE--EKFQEI-QGPCTLES---SLDVTLGIYDQSLSLLLLDTVDHCFKIW 282 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~--e~~~~i-~lP~~~~~---~~~~~l~~~~g~L~l~~~~~~~~~l~vW 282 (376)
..++..+|.+|.....+ .+.++|.++ +.|+.- ..|..... .....++..+|++++... ...+...
T Consensus 62 ~~P~v~~g~vyv~~~~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~---dg~l~Al 132 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL---DASVVAL 132 (582)
T ss_dssp CCCEEETTEEEEEETTT------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET---TTEEEEE
T ss_pred eccEEECCEEEEEcCCC------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC---CCEEEEE
Confidence 35688999999766432 599999875 456543 22321110 011234556777766554 3344333
Q ss_pred EeCC--CceeeEEEECCC---CceeeeEEEee--CC--cEEEEEc------CCeEEEEeCCCCcEEE
Q 048178 283 VMQK--KNWIKQSSVGPF---IGIFQPLLFWK--KG--AFFVESN------SSQLLLYEPGTGELRD 334 (376)
Q Consensus 283 ~l~~--~~W~~~~~i~~~---~~~~~~~~~~~--~g--~i~~~~~------~~~~~~yd~~t~~~~~ 334 (376)
..+. ..|.....- +. .....|+.... +| .+++... .+.++.||.+|++...
T Consensus 133 D~~TG~~~W~~~~~~-~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 133 NKNTGKVVWKKKFAD-HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp ESSSCCEEEEEECSC-GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred ECCCCCEEeeecCCC-CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 3333 447654211 10 11134544332 23 3444321 5679999999987554
No 217
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=32.57 E-value=2.1e+02 Score=23.47 Aligned_cols=139 Identities=9% Similarity=-0.075 Sum_probs=72.1
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
...+.+|+..++.-+.+... .. ....++.+ +|.+||.... ...|..+|+.......+ .+.... ...
T Consensus 57 ~~~I~~~~~~g~~~~~~~~~--~~-~~p~~ia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~-~~~~~~--~P~ 125 (267)
T 1npe_A 57 EPSIGRASLHGGEPTTIIRQ--DL-GSPEGIALDHLGRTIFWTDSQ-----LDRIEVAKMDGTQRRVL-FDTGLV--NPR 125 (267)
T ss_dssp TTEEEEEESSSCCCEEEECT--TC-CCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEE-ECSSCS--SEE
T ss_pred CCEEEEEecCCCCcEEEEEC--CC-CCccEEEEEecCCeEEEEECC-----CCEEEEEEcCCCCEEEE-EECCCC--Ccc
Confidence 45778888876542222111 11 11234444 5789987653 34788999875443333 111111 113
Q ss_pred eEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeE--EEeeC-CcEEEEEc-CCeEEEEeCCCCcE
Q 048178 259 TLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPL--LFWKK-GAFFVESN-SSQLLLYEPGTGEL 332 (376)
Q Consensus 259 ~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~--~~~~~-g~i~~~~~-~~~~~~yd~~t~~~ 332 (376)
.++.- +|.|++.........+.+..++.. -.+.. . .. .+..|. ++..+ +.+|+... .+.+..+|++++..
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~-~-~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRIL-A-QD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEE-E-CT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEE-E-EC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence 44444 567888775322356666666542 22221 1 11 123344 44444 45777654 56899999987655
Q ss_pred EEE
Q 048178 333 RDF 335 (376)
Q Consensus 333 ~~v 335 (376)
+.+
T Consensus 202 ~~~ 204 (267)
T 1npe_A 202 RKV 204 (267)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 218
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=32.22 E-value=2.7e+02 Score=24.82 Aligned_cols=173 Identities=9% Similarity=0.004 Sum_probs=90.1
Q ss_pred EEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCC
Q 048178 152 IGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDN 228 (376)
Q Consensus 152 ~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~ 228 (376)
.++++|...+. |... . .....++++++.+..-+.+.... + ....++.+ +|.+||.....
T Consensus 162 ~glavD~~~~~--lY~~------d----~~~~~I~~~~~~g~~~~~l~~~~--~-~~P~~iavdp~~g~ly~td~~~--- 223 (400)
T 3p5b_L 162 DGLAVDWIHSN--IYWT------D----SVLGTVSVADTKGVKRKTLFREN--G-SKPRAIVVDPVHGFMYWTDWGT--- 223 (400)
T ss_dssp EEEEEETTTTE--EEEE------E----TTTTEEEEECTTTCSEEEEEECS--S-CCEEEEEEETTTTEEEEEECSS---
T ss_pred ccEEEEecCCc--eEEE------E----CCCCeEEEEeCCCCceEEEEeCC--C-CCcceEEEecccCeEEEEeCCC---
Confidence 57888865543 2222 1 22457788888776554442111 1 11134444 68999976432
Q ss_pred CccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--cCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeE
Q 048178 229 DNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY--DQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPL 305 (376)
Q Consensus 229 ~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~ 305 (376)
...|..+|+....-..+-. ... .....|+.- ++.||++... ...|....++. ...... . ....+..|.
T Consensus 224 -~~~I~~~~~dG~~~~~~~~-~~l--~~P~glavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~-~--~~~~l~~P~ 294 (400)
T 3p5b_L 224 -PAKIKKGGLNGVDIYSLVT-ENI--QWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTIL-E--DEKRLAHPF 294 (400)
T ss_dssp -SCCEEEEETTSCSCEEEEC-SSC--SCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCCEEEE-E--CSSTTSSEE
T ss_pred -CCEEEEEeCCCCccEEEEE-CCC--CceEEEEEEeCCCEEEEEECC--CCEEEEEeCCCCccEEEE-e--CCCCCCCCE
Confidence 2478888887644333311 111 112345554 5678888764 56666666654 222222 1 112245666
Q ss_pred EEee-CCcEEEEE-cCCeEEEEeCCCC-cEEEEEEecc-eEEEEEeecCc
Q 048178 306 LFWK-KGAFFVES-NSSQLLLYEPGTG-ELRDFELECC-WFSIYIYTESL 351 (376)
Q Consensus 306 ~~~~-~g~i~~~~-~~~~~~~yd~~t~-~~~~v~~~~~-~~~~~~y~~sL 351 (376)
++.- ++.+|... ..+.+..+|..++ ..+.+...-. -..+.+|.+..
T Consensus 295 gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~ 344 (400)
T 3p5b_L 295 SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 344 (400)
T ss_dssp EEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGG
T ss_pred EEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeecc
Confidence 6654 44577664 3566999996555 4555542211 34455565543
No 219
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=31.75 E-value=2e+02 Score=28.21 Aligned_cols=61 Identities=8% Similarity=0.150 Sum_probs=34.2
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceE-eeec
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQ 247 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~ 247 (376)
...+++|+..+..-+.+......+..........+.+||.... ...|..+|..+.+. ..|.
T Consensus 561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~-----~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECST-----TTCEEEEETTTEEEEECCC
T ss_pred CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCC-----CCeEEEEEccCCCceEEee
Confidence 4577888876543343322211122222234456789998854 34799999876554 3443
No 220
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=31.23 E-value=2.9e+02 Score=24.71 Aligned_cols=109 Identities=9% Similarity=-0.060 Sum_probs=60.7
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
+|.|||.... ...|..+|+.......+-. .... ....+++- +|.|+..... ....+....++. +-.+.
T Consensus 170 ~~~lY~~d~~-----~~~I~~~~~~g~~~~~l~~-~~~~--~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG-~~~~~ 239 (400)
T 3p5b_L 170 HSNIYWTDSV-----LGTVSVADTKGVKRKTLFR-ENGS--KPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG-VDIYS 239 (400)
T ss_dssp TTEEEEEETT-----TTEEEEECTTTCSEEEEEE-CSSC--CEEEEEEETTTTEEEEEECS-SSCCEEEEETTS-CSCEE
T ss_pred CCceEEEECC-----CCeEEEEeCCCCceEEEEe-CCCC--CcceEEEecccCeEEEEeCC-CCCEEEEEeCCC-CccEE
Confidence 6899998754 3478999988765444311 1111 11345553 5778877752 234555555554 21111
Q ss_pred EEECCCCceeeeEEE--e-eCCcEEEEEc-CCeEEEEeCCCCcEEEEE
Q 048178 293 SSVGPFIGIFQPLLF--W-KKGAFFVESN-SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 293 ~~i~~~~~~~~~~~~--~-~~g~i~~~~~-~~~~~~yd~~t~~~~~v~ 336 (376)
. + . ..+..|-++ . .++.||+... ...+..+|+++...+.+.
T Consensus 240 ~-~-~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 240 L-V-T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 284 (400)
T ss_dssp E-E-C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred E-E-E-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence 1 1 1 123455444 3 2456877754 567999999887666653
No 221
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=30.22 E-value=3.7e+02 Score=25.72 Aligned_cols=207 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred eecceEEEeecCCeEEEEecCc-----cceeecCCCCCC---------------CCCccccccceEEEeeeCCCCCeEEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIAT-----RESVTLPKYRAI---------------IPQYTRVFGTKIGFGLDPKTKDYKVV 166 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T-----~~~~~LP~~~~~---------------~~~~~~~~~~~~~~g~d~~~~~ykvv 166 (376)
|-+|-.+.......++|++..+ ++...+-..... . ..+.+.|..+..-..
T Consensus 129 SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~----------~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 129 SPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIE----------KGTFWSPKGSCLAFY 198 (706)
T ss_dssp CTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCC----------CSEEECTTSSEEEEE
T ss_pred CCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCC----------ceEEECCCCCEEEEE
Q ss_pred EEEEEEecCCCCCC-----------------------------CcceEEEEEcCCCceEeccccCcccc-CCCCeEEECc
Q 048178 167 LILTLWDEKRDSSC-----------------------------PFSLVTVYNLSTNSWRNLKSIDYTMR-LSSERTYFDG 216 (376)
Q Consensus 167 ~~~~~~~~~~~~~~-----------------------------~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~~~G 216 (376)
.... . ....+.+++..++.-+.+........ ...-...-+|
T Consensus 199 ~~d~---------~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 269 (706)
T 2z3z_A 199 RMDQ---------SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE 269 (706)
T ss_dssp EEEC---------TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS
T ss_pred EECC---------CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC
Q ss_pred eEEEEeeecCCCCccEEEEEECCCc-eEeee-cCCCCCCCCCceeEEEe---cCeEEEEEecCCCCEEEEEEeCC-Ccee
Q 048178 217 AFYWLLKLENDNDNYVILSFHMAEE-KFQEI-QGPCTLESSLDVTLGIY---DQSLSLLLLDTVDHCFKIWVMQK-KNWI 290 (376)
Q Consensus 217 ~lywl~~~~~~~~~~~i~~fD~~~e-~~~~i-~lP~~~~~~~~~~l~~~---~g~L~l~~~~~~~~~l~vW~l~~-~~W~ 290 (376)
..-.............|..+|+.+. ....+ .-...........+... +|++.++... +....||.++. +.=.
T Consensus 270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~--~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR--DGWNHLYLYDTTGRLI 347 (706)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT--TSSCEEEEEETTSCEE
T ss_pred CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc--CCccEEEEEECCCCEE
Q ss_pred eEEEECCCCceeeeEEEeeCCc-EEEEEcCC-----eEEEEeCCCCcEEEE
Q 048178 291 KQSSVGPFIGIFQPLLFWKKGA-FFVESNSS-----QLLLYEPGTGELRDF 335 (376)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~-----~~~~yd~~t~~~~~v 335 (376)
...+- ........+++.++|+ |++..... .++.+|+++++.+.+
T Consensus 348 ~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 348 RQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred EecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
No 222
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=29.74 E-value=52 Score=24.81 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=22.1
Q ss_pred EEEEEcCCeEEEEeCCCCcEEEEEEecc
Q 048178 313 FFVESNSSQLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 313 i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 340 (376)
|+.....-.++.||..+++|++.+++|.
T Consensus 31 Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 58 (134)
T 2lyd_A 31 IVDSSSHVAFYTFNSSQNEWEKTDVEGA 58 (134)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHhhCCeEEEEEecCCcCceeEcCCcce
Confidence 5555444558889999999999999985
No 223
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=29.37 E-value=4e+02 Score=25.79 Aligned_cols=123 Identities=10% Similarity=0.039 Sum_probs=61.5
Q ss_pred ecceEEEeecCCeEEEEecCccce--eecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRES--VTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
.+|.|.+......++.+|+.|++. ..=+..+..............+..++ +. +|+.. ...-.+
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~v~v~-----------~~dg~l 129 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GD-KVYVG-----------TLDGRL 129 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BT-EEEEE-----------CTTSEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CC-EEEEE-----------cCCCEE
Confidence 478888777777788899999884 33222111000000000000011111 11 22221 113467
Q ss_pred EEEEcCCC--ceEeccccC-ccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCc--eEee
Q 048178 186 TVYNLSTN--SWRNLKSID-YTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEE--KFQE 245 (376)
Q Consensus 186 ~vyss~t~--~W~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e--~~~~ 245 (376)
..++.+|+ .|+.-...+ ........++..+|.+|.-....+......|.+||.++. .|+.
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 77887777 588543211 111233356778999986543211011358999999765 4554
No 224
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=29.29 E-value=2.6e+02 Score=23.60 Aligned_cols=138 Identities=12% Similarity=0.030 Sum_probs=77.6
Q ss_pred cceEEEEEcCCCceE-eccccCccccCCCCeE-EECceEEEEeeecCCCCccEEEEEECCCce-EeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWR-NLKSIDYTMRLSSERT-YFDGAFYWLLKLENDNDNYVILSFHMAEEK-FQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~-~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~i~~fD~~~e~-~~~i~lP~~~~~~~~~ 258 (376)
...+.+++..|++=. .++ ++. .+. ..++ ..++.+|..... ...+.++|.++.+ -..++.+ ... ..
T Consensus 43 ~s~v~~iD~~tg~v~~~i~-l~~-~~f-geGi~~~g~~lyv~t~~-----~~~v~viD~~t~~v~~~i~~g--~~~--g~ 110 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHK-MDD-SYF-GEGLTLLNEKLYQVVWL-----KNIGFIYDRRTLSNIKNFTHQ--MKD--GW 110 (266)
T ss_dssp TCEEEEEETTTCCEEEEEE-CCT-TCC-EEEEEEETTEEEEEETT-----CSEEEEEETTTTEEEEEEECC--SSS--CC
T ss_pred CCEEEEEECCCCCEEEEEe-cCC-Ccc-eEEEEEeCCEEEEEEec-----CCEEEEEECCCCcEEEEEECC--CCC--eE
Confidence 568999999998532 222 111 111 1233 345678887754 3489999998754 3556655 111 12
Q ss_pred eEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceee----e--EEEeeCCcEEEEEc-CCeEEEEeCCCCc
Q 048178 259 TLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQ----P--LLFWKKGAFFVESN-SSQLLLYEPGTGE 331 (376)
Q Consensus 259 ~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~----~--~~~~~~g~i~~~~~-~~~~~~yd~~t~~ 331 (376)
.+..-+++|++... +. .|++++...-..+.+| +...-.. + +.+. +|++|.... .+.+...|++|++
T Consensus 111 glt~Dg~~l~vs~g---s~--~l~viD~~t~~v~~~I-~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 111 GLATDGKILYGSDG---TS--ILYEIDPHTFKLIKKH-NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp EEEECSSSEEEECS---SS--EEEEECTTTCCEEEEE-ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred EEEECCCEEEEECC---CC--eEEEEECCCCcEEEEE-EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc
Confidence 23332334775432 33 5666666445555555 3321111 1 2223 788887653 5789999999987
Q ss_pred E-EEEEEe
Q 048178 332 L-RDFELE 338 (376)
Q Consensus 332 ~-~~v~~~ 338 (376)
. +++...
T Consensus 184 V~~~I~~~ 191 (266)
T 2iwa_A 184 LLGWILLP 191 (266)
T ss_dssp EEEEEECH
T ss_pred EEEEEECC
Confidence 5 456553
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=28.74 E-value=3.1e+02 Score=24.33 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=33.6
Q ss_pred EEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEEc--CCeEEEEeCCCCcEE-EEE
Q 048178 281 IWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESN--SSQLLLYEPGTGELR-DFE 336 (376)
Q Consensus 281 vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~--~~~~~~yd~~t~~~~-~v~ 336 (376)
|+-++ ....+.+| +......-+++..+|+ +++..+ .+.+-++|++|.+.. .|.
T Consensus 298 ViD~~--t~~vv~~i-~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 298 SVTAS--VGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEESS--SCCEEECC-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEECC--CCeEEEEE-ECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 44444 46666777 5543223355566776 676654 688999999998755 344
No 226
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=27.81 E-value=4.4e+02 Score=25.74 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred EEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeE----EEE
Q 048178 220 WLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQ----SSV 295 (376)
Q Consensus 220 wl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~----~~i 295 (376)
|++... .+..||..+++|.. |.......-..+..-+|.|.+... . .+..+..+..+.... ..+
T Consensus 77 WigT~~------Gl~~yd~~~~~f~~---~~~~~~~~i~~i~~~~g~lWigt~---~-Gl~~~~~~~~~~~~~~~~~~~l 143 (758)
T 3ott_A 77 YMGTDN------GILVYNYRADRYEQ---PETDFPTDVRTMALQGDTLWLGAL---N-GLYTYQLQSRKLTSFDTRRNGL 143 (758)
T ss_dssp EEEETT------EEEEEETTTTEECC---CSCCCCSCEEEEEEETTEEEEEET---T-EEEEEETTTCCEEEECHHHHCC
T ss_pred EEEeCC------CeEEEeCCCCEEEC---cccCCCceEEEEEecCCcEEEEcC---C-cceeEeCCCCeEEEeccCCCCc
Q ss_pred CCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEE
Q 048178 296 GPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 296 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v 335 (376)
+.. ...-+....+|.|++....+ ++.||+++++++.+
T Consensus 144 -~~~-~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~ 180 (758)
T 3ott_A 144 -PNN-TIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGI 180 (758)
T ss_dssp -SCS-CEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEE
T ss_pred -CCC-eEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEe
No 227
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=27.44 E-value=2.8e+02 Score=23.46 Aligned_cols=130 Identities=9% Similarity=0.144 Sum_probs=66.7
Q ss_pred cceEEEEEcCCCceE-eccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWR-NLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
...+.+|+.+++.-. .+... .....++.+ +|.+...+.. ...|..+|+.+......- ..... .-.
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~s~s~-----dg~i~iwd~~~~~~~~~~-~~h~~--~v~ 252 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGH----AMPIRSLTFSPDSQLLVTASD-----DGYIKIYDVQHANLAGTL-SGHAS--WVL 252 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCC----SSCCCEEEECTTSCEEEEECT-----TSCEEEEETTTCCEEEEE-CCCSS--CEE
T ss_pred CCeEEEEECCCCcEEEEEccc----CCceeEEEEcCCCCEEEEEcC-----CCeEEEEECCCcceeEEE-cCCCC--ceE
Confidence 447888888876421 22111 011123333 4554333322 336888998876543221 11100 112
Q ss_pred eEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeC
Q 048178 259 TLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEP 327 (376)
Q Consensus 259 ~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~ 327 (376)
.+.-. +|...+.... +..+.||.++. ...+.++.....-..-+++..+|..++. ..++.+..||.
T Consensus 253 ~~~~sp~~~~l~s~s~--D~~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSS--DKSVKVWDVGT--RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEECTTSSEEEEEET--TSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEECCCCCEEEEEeC--CCcEEEEeCCC--CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 33333 5555444444 78899999876 3344454222222334566667776554 56777888885
No 228
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=26.84 E-value=3.1e+02 Score=23.73 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=52.6
Q ss_pred cEEEEEECCCceEe-eecCCCCCCC-CC-ceeEEEe-cC-eEEEEEec-CCCCEEEEEEeCCCceeeEEEEC-CCCceee
Q 048178 231 YVILSFHMAEEKFQ-EIQGPCTLES-SL-DVTLGIY-DQ-SLSLLLLD-TVDHCFKIWVMQKKNWIKQSSVG-PFIGIFQ 303 (376)
Q Consensus 231 ~~i~~fD~~~e~~~-~i~lP~~~~~-~~-~~~l~~~-~g-~L~l~~~~-~~~~~l~vW~l~~~~W~~~~~i~-~~~~~~~ 303 (376)
..|..+|+.+.+.. .+..+..... .. -..+... +| .+.+.... .....+.+|.+.... ..+..+. .......
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~ 266 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGIL 266 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEE
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCcee
Confidence 36999999886553 3344322111 11 1233333 33 35555543 112389999988621 1111221 1111133
Q ss_pred eEEEee-CCcEEE-EEcCCeEEEEeCCCCcE
Q 048178 304 PLLFWK-KGAFFV-ESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 304 ~~~~~~-~g~i~~-~~~~~~~~~yd~~t~~~ 332 (376)
-+++.+ ++.+++ ...++.+..||+++++.
T Consensus 267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297 (416)
T ss_dssp EEEECSSCSSCEEEEESSSEEEEECSSSCCE
T ss_pred EEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc
Confidence 355555 666555 45678899999988754
No 229
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=26.38 E-value=4.3e+02 Score=25.25 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=58.7
Q ss_pred CCeEEECceEEEEee-ecCCCCccEEEEEEC-CCc--eEeee-cCCCCC-----CCCCceeEEE--ecCe----EEEEEe
Q 048178 209 SERTYFDGAFYWLLK-LENDNDNYVILSFHM-AEE--KFQEI-QGPCTL-----ESSLDVTLGI--YDQS----LSLLLL 272 (376)
Q Consensus 209 ~~~v~~~G~lywl~~-~~~~~~~~~i~~fD~-~~e--~~~~i-~lP~~~-----~~~~~~~l~~--~~g~----L~l~~~ 272 (376)
..++..+|.+|.... .+ .+.++|. ++. .|+.- ..+... .......+++ .+|. +++...
T Consensus 56 ~tP~v~~g~vyv~~~~~~------~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN------NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp SCCEEETTEEEEECSTTT------CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred eccEEECCEEEEEeCCCC------EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 357888999997664 22 6999999 654 45542 222110 0001122444 4555 555432
Q ss_pred cCCCCEEEEEEeCC--CceeeEEEE-CC-CCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEE
Q 048178 273 DTVDHCFKIWVMQK--KNWIKQSSV-GP-FIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRD 334 (376)
Q Consensus 273 ~~~~~~l~vW~l~~--~~W~~~~~i-~~-~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~ 334 (376)
...+.....+. ..|.....- .. ......|+. . +|.+++... .+.+..||.+|++...
T Consensus 130 ---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 ---DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-V-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E-TTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred ---CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-E-CCEEEEEecccccCCCCeEEEEECCCCcEEE
Confidence 23333333333 447653210 00 011134433 2 566666542 5789999999987553
No 230
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=25.54 E-value=3.1e+02 Score=23.28 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=76.5
Q ss_pred cceEEEeec--CCeEEEEecCccceeecCCCCCCC---CCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 109 CGIVFIEGL--NNRITLWNIATRESVTLPKYRAII---PQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 109 ~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~---~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
+|.+++.+. ...+.++++..+....+....... .... ....++.+|+..+..- |+ . ....
T Consensus 154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~-v~--d---------~~~~ 218 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQF---SVPHSLALVPHLDQLC-VA--D---------RENG 218 (329)
T ss_dssp TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEE---SCEEEEEEETTTTEEE-EE--E---------TTTT
T ss_pred CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCccc---CCCcEEEEECCCCEEE-EE--E---------CCCC
Confidence 788877773 677888886544444443211100 0001 1135777886544311 11 1 2356
Q ss_pred eEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecC--CCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLEN--DNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
.+.+|+..++.....-..+..........+..|.+|....... ......|..+|..+.+....--+..........++
T Consensus 219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia 298 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV 298 (329)
T ss_dssp EEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred EEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence 8999999876654321111000000001111233333322110 00144788999887766444211111111123444
Q ss_pred Ee-cCeEEEEEecCCCCEEEEEEeCC
Q 048178 262 IY-DQSLSLLLLDTVDHCFKIWVMQK 286 (376)
Q Consensus 262 ~~-~g~L~l~~~~~~~~~l~vW~l~~ 286 (376)
.. +|.|++.... ...+.+|.++.
T Consensus 299 ~~~dG~lyvad~~--~~~I~~~~~~~ 322 (329)
T 3fvz_A 299 ASEDGTVYIGDAH--TNTVWKFTLTE 322 (329)
T ss_dssp ECTTSEEEEEESS--SCCEEEEEEEE
T ss_pred ECCCCCEEEEECC--CCEEEEEeCCc
Confidence 43 5667777764 66788887754
No 231
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=25.37 E-value=2.8e+02 Score=22.77 Aligned_cols=197 Identities=9% Similarity=0.064 Sum_probs=90.1
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
|.+|+|.... ++.+.|||..|++...+-..... ... ...+.+.+.. .+-+.+ .....+.
T Consensus 34 S~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~--~~~-----V~~v~~~~~~-~~l~sg------------s~Dg~v~ 92 (318)
T 4ggc_A 34 SSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP--GEY-----ISSVAWIKEG-NYLAVG------------TSSAEVQ 92 (318)
T ss_dssp CTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST--TCC-----EEEEEECTTS-SEEEEE------------ETTSEEE
T ss_pred CCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC--CCe-----EEEEEECCCC-CEEEEE------------ECCCcEE
Confidence 6678766544 56789999999987653222111 111 2345555443 333222 1245788
Q ss_pred EEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ec
Q 048178 187 VYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YD 264 (376)
Q Consensus 187 vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~ 264 (376)
+++.+++.-. ..... . ........++.+-..+.. ...+...+..+.......+..... ....+.. .+
T Consensus 93 iw~~~~~~~~~~~~~h---~-~~~~~~~~~~~~l~s~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 161 (318)
T 4ggc_A 93 LWDVQQQKRLRNMTSH---S-ARVGSLSWNSYILSSGSR-----SGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPD 161 (318)
T ss_dssp EEETTTTEEEEEEECC---S-SCEEEEEEETTEEEEEET-----TSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTT
T ss_pred EeecCCceeEEEecCc---c-ceEEEeecCCCEEEEEec-----CCceEeeecCCCceeEEEEcCccC--ceEEEEEcCC
Confidence 8888876421 11111 0 111123333433222222 224455555443322222111111 1112222 34
Q ss_pred CeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEee-CCcEEEE-E--cCCeEEEEeCCCCcEEEEEE
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWK-KGAFFVE-S--NSSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~-~--~~~~~~~yd~~t~~~~~v~~ 337 (376)
|.+.+.... +..+.||.+.. ..................+.... ++.++.. . ..+.+..+|.++........
T Consensus 162 ~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 162 GRHLASGGN--DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp SSEEEEEET--TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEec--CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 555544444 68899999876 22222222211111122233333 3344432 2 34568888988887665533
No 232
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=24.42 E-value=3.1e+02 Score=22.84 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=74.5
Q ss_pred CcceEEEEEcCCC--ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 181 PFSLVTVYNLSTN--SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 181 ~~~~~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
....+.+++.+++ .|+.-..-. .......+.-+|.++. .. ...+.+||.+.+....+..|..... .
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv-s~------~~~V~~~d~~G~~~W~~~~~~~~~~---~ 80 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF-SY------SKGAKMITRDGRELWNIAAPAGCEM---Q 80 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE-EC------BSEEEEECTTSCEEEEEECCTTCEE---E
T ss_pred CCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE-eC------CCCEEEECCCCCEEEEEcCCCCccc---c
Confidence 3568888898777 587543110 0011112333787776 32 2379999995443334455422111 1
Q ss_pred eEEE-ecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCC--Cce--eeeEEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 259 TLGI-YDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPF--IGI--FQPLLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 259 ~l~~-~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~--~~~--~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
.... -+|++.+.... ..-.|+.++. ++......++.. ... ..-+....+|.+++.. .++++..||++.+.
T Consensus 81 ~~~~~~dG~~lv~~~~---~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~ 157 (276)
T 3no2_A 81 TARILPDGNALVAWCG---HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQL 157 (276)
T ss_dssp EEEECTTSCEEEEEES---TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred ccEECCCCCEEEEecC---CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCE
Confidence 2222 36666665542 1235566554 443333333211 000 1123445678877764 46889999999776
Q ss_pred EEEEEEe
Q 048178 332 LRDFELE 338 (376)
Q Consensus 332 ~~~v~~~ 338 (376)
+.++...
T Consensus 158 ~w~~~~~ 164 (276)
T 3no2_A 158 LNSVKLS 164 (276)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 6666553
No 233
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=24.29 E-value=3.6e+02 Score=23.55 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=53.2
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK 309 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (376)
..|..+|+++.+....--... . .-..+... +|...+.... +..+.+|.++.++-...... ..-...+++..
T Consensus 145 ~~i~iwd~~~~~~~~~~~~h~-~--~v~~~~~~p~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~ 216 (393)
T 1erj_A 145 RLIRIWDIENRKIVMILQGHE-Q--DIYSLDYFPSGDKLVSGSG--DRTVRIWDLRTGQCSLTLSI---EDGVTTVAVSP 216 (393)
T ss_dssp SCEEEEETTTTEEEEEECCCS-S--CEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEEC---SSCEEEEEECS
T ss_pred CeEEEEECCCCcEEEEEccCC-C--CEEEEEEcCCCCEEEEecC--CCcEEEEECCCCeeEEEEEc---CCCcEEEEEEC
Confidence 368889998876533311110 0 11223332 4554444444 78999999887544333332 21233455555
Q ss_pred -CCcEEEE-EcCCeEEEEeCCCCcE
Q 048178 310 -KGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 310 -~g~i~~~-~~~~~~~~yd~~t~~~ 332 (376)
+|.+++. ..++.+..||+++++.
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~ 241 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFL 241 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcE
Confidence 6776654 5677899999988754
No 234
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=24.13 E-value=1e+02 Score=24.13 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=26.5
Q ss_pred eEEEEecCcc-ceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEE
Q 048178 120 RITLWNIATR-ESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI 168 (376)
Q Consensus 120 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 168 (376)
.++++||.|+ .|+..-... . .+.+.+|+..+.|+|+.+
T Consensus 17 ~Vm~~D~~tk~~WvP~g~~~------~-----~V~i~~d~~rnsyRIvg~ 55 (168)
T 1i2h_A 17 HVFQIDPNTKKNWVPTSKHA------V-----TVSYFYDSTRNVYRIISL 55 (168)
T ss_dssp EEEEECTTSSCCSEESCSSC------E-----EEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCCceeecCCCC------e-----EEEEEEcCCCCEEEEEEc
Confidence 5789999997 895532221 1 245668888889999885
No 235
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=23.71 E-value=4.9e+02 Score=24.98 Aligned_cols=193 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred eeeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 105 KGLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 105 ~~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
++..+|.|...+. ...+..+++-......+-...... ..++++|...+. .|... ....
T Consensus 44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~---------P~GlAvD~~~~~--------LY~tD----~~~~ 102 (628)
T 4a0p_A 44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY---------PEGMAVDWLGKN--------LYWAD----TGTN 102 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTE--------EEEEE----TTTT
T ss_pred EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCC---------cceEEEEeCCCE--------EEEEE----CCCC
Q ss_pred eEEEEEcCCCceEeccccCccccCCCCeEEEC---ceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeE
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTMRLSSERTYFD---GAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTL 260 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~---G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l 260 (376)
.++++++.+..=+.+.......| .++.++ |.+||..... ...|..+|+.......+- ..........+
T Consensus 103 ~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~----~~~I~r~~~dG~~~~~l~--~~~~~P~Glal 173 (628)
T 4a0p_A 103 RIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG----KPKIDRAAMDGSERTTLV--PNVGRANGLTI 173 (628)
T ss_dssp EEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS----SCEEEEEETTSCSCEEEE--CSCSSEEEEEE
T ss_pred EEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC----CCEEEEEeCCCCceEEEE--CCCCCcceEEE
Q ss_pred EEecCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEee-CCcEEEEEc-CCeEEEEeCCCCcEEEE
Q 048178 261 GIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWK-KGAFFVESN-SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~-~~~~~~yd~~t~~~~~v 335 (376)
-..+++||.+... ...+....++. .. ..+..- +..|.++.- ++.+|+... .+.+...|..+++-..+
T Consensus 174 D~~~~~LY~aD~~--~~~I~~~d~dG~~~-~v~~~~-----l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 174 DYAKRRLYWTDLD--TNLIESSNMLGLNR-EVIADD-----LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp ETTTTEEEEEETT--TTEEEEEETTSCSC-EEEEEC-----CSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred ccccCEEEEEECC--CCEEEEEcCCCCce-EEeecc-----CCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEE
No 236
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=23.69 E-value=3.5e+02 Score=23.24 Aligned_cols=64 Identities=8% Similarity=0.049 Sum_probs=40.8
Q ss_pred cCeEEEEEecCCCCE-EEEEEeCCCceeeEEEEC-C-CCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCc
Q 048178 264 DQSLSLLLLDTVDHC-FKIWVMQKKNWIKQSSVG-P-FIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~-l~vW~l~~~~W~~~~~i~-~-~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~ 331 (376)
+|++.+.+.. +.. +.||.+... ..+..+. . ...-..-+++.++|..++. ..++.+..||+++..
T Consensus 206 ~g~~l~s~s~--d~~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 206 KSDMVATCSQ--DGTIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSSEEEEEET--TCSEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEeC--CCCEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 5555555543 566 999999873 3444441 1 2222444667778886665 567889999998764
No 237
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=23.25 E-value=1.4e+02 Score=24.31 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=23.1
Q ss_pred EEEEEcCCeEEEEeCCCCcEEEEEEecc
Q 048178 313 FFVESNSSQLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 313 i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 340 (376)
|++....-.++.||.++++|.+.+++|.
T Consensus 37 IL~~t~hasvYkfd~~~~eW~K~~~eG~ 64 (231)
T 1q67_A 37 LLFHTPHASLYKWDFKKDEWNKLEYQGV 64 (231)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHhcCCeEEEEEecCCCCceEecCcEEE
Confidence 5555555669999999999999999984
No 238
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=22.22 E-value=2.5e+02 Score=24.99 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=24.3
Q ss_pred EEEEEecCCCCEEEEEEeCC-CceeeEEEEC
Q 048178 267 LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVG 296 (376)
Q Consensus 267 L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~ 296 (376)
+|++... ...+.+|...+ ..|+++++..
T Consensus 55 ~~~~~~~--~~~v~lw~~~~~~~~~~~~~~~ 83 (356)
T 2w18_A 55 PCIITAC--EDVVSLWKALDAWQWEKLYTWH 83 (356)
T ss_dssp EEEEEEE--SSEEEEEEESSSSBEEEEEEEE
T ss_pred cEEEEec--cceEEEcccCCCccceeeEEEe
Confidence 8888886 78999999998 7899998874
No 239
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=22.11 E-value=6.2e+02 Score=25.50 Aligned_cols=187 Identities=8% Similarity=0.050 Sum_probs=92.1
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+|.....+..+.|||..+.+....-.- .. ....+.|.+ +. .++... ....+.+++.
T Consensus 31 ~lAsgs~Dg~I~lw~~~~~~~~~~~~~----~~------~V~~l~fsp--g~-~L~S~s-----------~D~~v~lWd~ 86 (902)
T 2oaj_A 31 LLAIATVTGEVHIYGQQQVEVVIKLED----RS------AIKEMRFVK--GI-YLVVIN-----------AKDTVYVLSL 86 (902)
T ss_dssp EEEEEETTSEEEEECSTTCEEEEECSS----CC------CEEEEEEET--TT-EEEEEE-----------TTCEEEEEET
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEcCC----CC------CEEEEEEcC--CC-EEEEEE-----------CcCeEEEEEC
Confidence 344444566778999877665432111 01 124666776 44 343332 2457888888
Q ss_pred CCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCC------CCCCC--CceeE
Q 048178 191 STNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPC------TLESS--LDVTL 260 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~------~~~~~--~~~~l 260 (376)
+++.-...-..+ ....++.+ +|..-..+.. ...|..+|+.+........|. ....+ .-..+
T Consensus 87 ~~~~~~~~~~~~----~~V~~v~~sp~g~~l~sgs~-----dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 87 YSQKVLTTVFVP----GKITSIDTDASLDWMLIGLQ-----NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp TTCSEEEEEECS----SCEEEEECCTTCSEEEEEET-----TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred CCCcEEEEEcCC----CCEEEEEECCCCCEEEEEcC-----CCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence 876422110010 00112222 2333222322 336888999887654322211 00111 11233
Q ss_pred EEec--CeEEEEEecCCCCEEEEEEeCCCceeeEEEEC-C---C------------CceeeeEEEeeCCcEEEE-EcCCe
Q 048178 261 GIYD--QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG-P---F------------IGIFQPLLFWKKGAFFVE-SNSSQ 321 (376)
Q Consensus 261 ~~~~--g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~-~---~------------~~~~~~~~~~~~g~i~~~-~~~~~ 321 (376)
.-.. +.+.++... +..+ +|.++..+-.+..... + . .....-+++..+|..++. ..++.
T Consensus 158 ~~sp~~~~~l~~g~~--dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 158 QWNPRDIGTVLISYE--YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEETTEEEEEEEECS--SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEccCCCCEEEEEeC--CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 3332 234444443 6778 9999874322222110 0 0 011334566678886665 56788
Q ss_pred EEEEeCCCCcEE
Q 048178 322 LLLYEPGTGELR 333 (376)
Q Consensus 322 ~~~yd~~t~~~~ 333 (376)
+..||+++++.-
T Consensus 235 i~lWd~~~g~~~ 246 (902)
T 2oaj_A 235 LVFWDANSGHMI 246 (902)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCcEE
Confidence 999999887653
No 240
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=21.98 E-value=3.9e+02 Score=23.43 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=57.6
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+|+|++.+.+..++-.|..|++.+.-=...... . .+.........+-.++.+. . ...-.+..
T Consensus 9 ~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~--p------~~~~~~~~~~~~~~~~vv~-----p----~~dG~l~a 71 (339)
T 2be1_A 9 LSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQ--P------LIEIQEPSRLETYETLIIE-----P----FGDGNIYY 71 (339)
T ss_dssp EEEEEEEEETTSCEEEEETTTTEEEEEECGGGSC--C------SEECCCSCTTTSSEEEEEC-----C----STTTEEEE
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEecCCccC--C------cEEecCCccccCCcEEEEE-----E----CCCCEEEE
Confidence 3678888888888888999888744411111000 0 0010000001111222220 0 12446777
Q ss_pred EEcCCCceEeccccCccc---c--CCCCeEE-------ECceEEEEeeecCCCCccEEEEEECCCceEee
Q 048178 188 YNLSTNSWRNLKSIDYTM---R--LSSERTY-------FDGAFYWLLKLENDNDNYVILSFHMAEEKFQE 245 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~---~--~~~~~v~-------~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~ 245 (376)
|+.+++.|+---..+... + ....+|. .+|.+|.-..++ .+.++|..+++-.+
T Consensus 72 ~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g------~l~ald~~tG~~~W 135 (339)
T 2be1_A 72 FNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT------IMYTINMLNGEIIS 135 (339)
T ss_dssp EETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEE------EEEEEETTTCCEEE
T ss_pred EECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCC------EEEEEECCCCcEEE
Confidence 787777665321111100 0 1122344 799999877765 89999998876543
No 241
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.85 E-value=40 Score=19.99 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhcCC
Q 048178 7 DDSPEDIMIEILSRLP 22 (376)
Q Consensus 7 ~~LP~Dll~eIl~rLp 22 (376)
..||.|+-+|||+--.
T Consensus 22 ~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 22 KQLPADIQEEILSGKS 37 (48)
T ss_dssp TTSCHHHHHHHTTCCC
T ss_pred HHCcHHHHHHHHhcch
Confidence 4677777777776543
No 242
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=21.17 E-value=4.5e+02 Score=23.58 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=37.1
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEE
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~ 333 (376)
+.+.+.... +..+.||.+... ...........-..-+++..+|..++ ...++.+..||.+.+...
T Consensus 162 ~~~las~s~--Dg~v~iwD~~~~--~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 162 PSMVAVCLA--DGSIAVLQVTET--VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227 (434)
T ss_dssp TTEEEEEET--TSCEEEEEESSS--EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred CCEEEEEEC--CCeEEEEEcCCC--cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence 334444443 678999998874 22222212222234455566777554 566788999999844333
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=20.72 E-value=5.8e+02 Score=24.71 Aligned_cols=124 Identities=9% Similarity=0.006 Sum_probs=61.8
Q ss_pred ecceEEEeecCCeEEEEecCccceee--cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVT--LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~--LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
.+|.|.+......++.+|+.|++.+. =+..+..............+..++ +. +|+.. ...-.+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g-~v~v~-----------~~dg~l 133 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KG-KVYVG-----------VLDGRL 133 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TT-EEEEE-----------CTTSEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CC-EEEEE-----------ccCCEE
Confidence 47888777766778889999988433 222111000000000000111122 11 22221 113467
Q ss_pred EEEEcCCC--ceEeccc-cCc-cccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eeee
Q 048178 186 TVYNLSTN--SWRNLKS-IDY-TMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQEI 246 (376)
Q Consensus 186 ~vyss~t~--~W~~~~~-~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~i 246 (376)
..++.+|+ .|+.-.. .+. .......++..+|.+|.-....+......|.+||.++.+ |+.-
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 77888777 5875432 111 112333567789999874432110114589999998654 6543
Done!