Query 048179
Match_columns 589
No_of_seqs 677 out of 3779
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.9E-98 4E-103 815.0 65.0 583 1-585 213-801 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4.6E-90 9.9E-95 731.9 62.3 547 39-585 85-639 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.1E-77 1.8E-81 645.7 57.5 508 2-514 113-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.5E-67 5.4E-72 559.9 55.3 503 7-516 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 8.7E-64 1.9E-68 532.8 51.1 472 2-476 397-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5E-63 1.1E-67 525.2 45.6 408 1-411 149-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-31 2.3E-36 299.1 55.1 494 8-511 361-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-31 4.7E-36 296.6 55.9 492 9-510 328-833 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-23 3.5E-28 234.0 53.4 491 9-508 61-665 (1157)
10 PRK11447 cellulose synthase su 99.9 1.6E-22 3.5E-27 226.0 52.8 486 9-508 180-739 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2E-23 4.3E-28 198.0 36.1 445 44-500 51-510 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.8E-21 3.9E-26 184.8 31.4 419 81-511 53-487 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.5E-19 3.3E-24 193.2 49.3 469 21-508 55-671 (987)
14 PRK09782 bacteriophage N4 rece 99.9 1.7E-18 3.6E-23 185.3 52.8 490 9-510 77-707 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-19 4.6E-24 188.9 43.5 417 81-509 132-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 8E-20 1.7E-24 182.5 29.9 289 224-516 47-354 (389)
17 PRK10049 pgaA outer membrane p 99.9 2.2E-17 4.7E-22 176.8 46.3 395 80-509 19-456 (765)
18 PRK11788 tetratricopeptide rep 99.9 4E-19 8.8E-24 177.5 29.5 299 48-379 42-354 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-17 3.8E-22 174.5 42.6 421 44-481 130-577 (615)
20 PRK15174 Vi polysaccharide exp 99.9 1.3E-17 2.7E-22 174.8 40.2 330 144-480 44-386 (656)
21 PRK15174 Vi polysaccharide exp 99.9 1.3E-17 2.9E-22 174.7 40.3 329 178-512 43-384 (656)
22 KOG2002 TPR-containing nuclear 99.9 2.3E-17 4.9E-22 165.5 39.2 466 40-512 269-801 (1018)
23 PRK10049 pgaA outer membrane p 99.8 4.3E-17 9.3E-22 174.6 38.5 390 50-484 24-465 (765)
24 KOG2002 TPR-containing nuclear 99.8 3.2E-16 6.9E-21 157.4 41.1 477 26-511 146-677 (1018)
25 PRK14574 hmsH outer membrane p 99.8 1E-15 2.2E-20 160.8 43.8 424 51-483 44-521 (822)
26 PRK14574 hmsH outer membrane p 99.8 6.1E-15 1.3E-19 155.0 46.8 421 85-510 43-514 (822)
27 KOG0495 HAT repeat protein [RN 99.8 5.6E-14 1.2E-18 135.3 41.7 462 50-523 415-892 (913)
28 KOG2003 TPR repeat-containing 99.7 1.3E-14 2.8E-19 133.7 32.6 272 220-495 427-709 (840)
29 KOG2076 RNA polymerase III tra 99.7 3E-13 6.4E-18 135.5 43.0 484 23-510 152-850 (895)
30 KOG0495 HAT repeat protein [RN 99.7 5.2E-13 1.1E-17 128.8 42.9 462 16-488 412-893 (913)
31 KOG4422 Uncharacterized conser 99.7 3.3E-13 7.2E-18 123.8 37.2 416 41-476 116-591 (625)
32 KOG4422 Uncharacterized conser 99.7 8.2E-13 1.8E-17 121.3 36.2 358 37-440 203-587 (625)
33 KOG0547 Translocase of outer m 99.7 4.1E-13 8.8E-18 125.4 32.1 421 44-508 118-565 (606)
34 KOG1915 Cell cycle control pro 99.7 1.2E-11 2.6E-16 115.2 39.9 490 11-507 74-623 (677)
35 KOG2076 RNA polymerase III tra 99.7 7.2E-13 1.6E-17 132.8 33.4 330 155-519 152-522 (895)
36 PF13429 TPR_15: Tetratricopep 99.6 6E-16 1.3E-20 146.3 11.0 252 217-507 13-275 (280)
37 KOG2003 TPR repeat-containing 99.6 3.3E-13 7.1E-18 124.6 27.0 444 11-461 202-709 (840)
38 KOG1915 Cell cycle control pro 99.6 1.6E-11 3.4E-16 114.4 36.3 427 110-551 72-538 (677)
39 PRK10747 putative protoheme IX 99.6 1.7E-12 3.6E-17 128.5 29.4 288 155-476 97-391 (398)
40 KOG1126 DNA-binding cell divis 99.6 2.4E-13 5.1E-18 132.1 21.3 277 226-511 333-622 (638)
41 KOG1126 DNA-binding cell divis 99.6 4.7E-13 1E-17 130.1 22.6 242 258-508 334-585 (638)
42 PRK10747 putative protoheme IX 99.6 3.6E-12 7.7E-17 126.2 29.5 275 225-508 97-389 (398)
43 KOG1173 Anaphase-promoting com 99.6 5E-11 1.1E-15 113.8 34.2 262 242-508 243-517 (611)
44 KOG4318 Bicoid mRNA stability 99.6 1.2E-11 2.5E-16 123.7 30.8 486 2-513 17-598 (1088)
45 KOG1155 Anaphase-promoting com 99.5 9.7E-11 2.1E-15 109.1 33.7 326 175-508 162-494 (559)
46 TIGR00540 hemY_coli hemY prote 99.5 2.2E-11 4.8E-16 121.3 32.3 289 154-473 96-397 (409)
47 KOG1155 Anaphase-promoting com 99.5 7.9E-11 1.7E-15 109.7 33.0 354 106-507 159-534 (559)
48 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.3E-18 130.9 12.7 253 149-404 15-274 (280)
49 TIGR00540 hemY_coli hemY prote 99.5 4.1E-11 9E-16 119.3 29.3 279 224-508 96-398 (409)
50 KOG4162 Predicted calmodulin-b 99.5 5.7E-10 1.2E-14 110.6 36.2 456 53-510 239-784 (799)
51 KOG0547 Translocase of outer m 99.4 2.2E-10 4.7E-15 107.5 28.3 222 320-581 334-568 (606)
52 TIGR02521 type_IV_pilW type IV 99.4 4.6E-11 9.9E-16 110.1 23.2 197 311-508 30-231 (234)
53 KOG1173 Anaphase-promoting com 99.4 8.1E-10 1.7E-14 105.7 31.0 418 6-457 45-533 (611)
54 COG2956 Predicted N-acetylgluc 99.4 7.6E-10 1.6E-14 98.6 28.5 299 154-517 47-355 (389)
55 KOG2047 mRNA splicing factor [ 99.4 2E-08 4.3E-13 97.7 40.2 488 10-508 102-686 (835)
56 COG3071 HemY Uncharacterized e 99.4 8.2E-10 1.8E-14 101.5 28.4 286 155-474 97-389 (400)
57 KOG1174 Anaphase-promoting com 99.4 4.6E-09 1E-13 96.7 32.5 309 173-486 190-511 (564)
58 COG3071 HemY Uncharacterized e 99.4 8.8E-10 1.9E-14 101.3 27.8 276 90-371 98-389 (400)
59 KOG3785 Uncharacterized conser 99.4 5.2E-09 1.1E-13 94.4 31.0 463 20-516 32-521 (557)
60 KOG2047 mRNA splicing factor [ 99.4 1.1E-07 2.3E-12 92.8 41.5 482 8-495 136-709 (835)
61 KOG2376 Signal recognition par 99.4 2.8E-08 6E-13 95.9 37.0 434 48-505 19-516 (652)
62 KOG1129 TPR repeat-containing 99.4 5.6E-11 1.2E-15 105.7 17.3 229 247-511 227-460 (478)
63 COG2956 Predicted N-acetylgluc 99.3 3.9E-09 8.4E-14 94.2 26.4 250 255-508 47-310 (389)
64 PRK12370 invasion protein regu 99.3 7.4E-10 1.6E-14 114.7 25.6 260 242-510 255-536 (553)
65 KOG1840 Kinesin light chain [C 99.3 1.2E-09 2.7E-14 107.7 25.0 230 279-508 200-478 (508)
66 KOG1156 N-terminal acetyltrans 99.3 1E-07 2.3E-12 93.1 37.3 124 380-506 373-508 (700)
67 KOG4318 Bicoid mRNA stability 99.3 6.4E-10 1.4E-14 111.6 22.2 250 163-429 11-286 (1088)
68 PF13041 PPR_2: PPR repeat fam 99.3 1E-11 2.2E-16 82.1 5.6 50 140-189 1-50 (50)
69 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-09 3E-14 103.1 22.2 190 314-510 66-266 (296)
70 PF13041 PPR_2: PPR repeat fam 99.3 1.9E-11 4.2E-16 80.8 6.8 50 341-390 1-50 (50)
71 PRK12370 invasion protein regu 99.2 1.2E-09 2.7E-14 113.1 22.8 211 292-508 275-501 (553)
72 KOG4162 Predicted calmodulin-b 99.2 2.2E-08 4.7E-13 99.7 29.4 439 6-480 319-788 (799)
73 TIGR02521 type_IV_pilW type IV 99.2 3.9E-09 8.4E-14 97.1 23.2 196 244-476 32-233 (234)
74 COG3063 PilF Tfp pilus assembl 99.2 1.9E-09 4.1E-14 91.8 18.3 164 345-511 37-204 (250)
75 KOG1174 Anaphase-promoting com 99.2 1.8E-07 3.9E-12 86.4 31.7 263 241-509 230-500 (564)
76 KOG1156 N-terminal acetyltrans 99.2 5.9E-07 1.3E-11 88.0 36.1 424 53-522 19-486 (700)
77 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-08 4.8E-13 94.9 25.3 228 258-492 41-283 (296)
78 KOG1840 Kinesin light chain [C 99.2 1.6E-08 3.5E-13 99.9 24.4 199 249-474 247-478 (508)
79 PF12569 NARP1: NMDA receptor- 99.2 4.8E-07 1E-11 90.8 35.0 428 49-505 12-516 (517)
80 KOG3785 Uncharacterized conser 99.1 3.3E-08 7.1E-13 89.4 23.2 416 16-456 63-504 (557)
81 KOG0624 dsRNA-activated protei 99.1 2.9E-07 6.3E-12 83.0 28.8 288 217-510 43-371 (504)
82 KOG1125 TPR repeat-containing 99.1 8.1E-09 1.7E-13 99.5 19.8 249 288-554 295-556 (579)
83 KOG1129 TPR repeat-containing 99.1 3.3E-09 7.1E-14 94.6 15.7 238 211-486 222-469 (478)
84 PF12569 NARP1: NMDA receptor- 99.1 1.7E-07 3.7E-12 94.0 27.1 282 220-507 12-332 (517)
85 KOG0985 Vesicle coat protein c 99.0 1.1E-05 2.4E-10 82.9 39.2 144 342-506 1103-1246(1666)
86 KOG1127 TPR repeat-containing 99.0 2.7E-07 5.9E-12 94.4 27.9 494 11-508 493-1103(1238)
87 COG3063 PilF Tfp pilus assembl 99.0 2.1E-07 4.5E-12 79.6 21.5 168 311-480 68-241 (250)
88 KOG0548 Molecular co-chaperone 99.0 1.7E-07 3.8E-12 89.8 23.0 90 421-510 365-456 (539)
89 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.7E-11 86.2 29.8 294 214-510 8-337 (355)
90 PRK04841 transcriptional regul 99.0 9.8E-06 2.1E-10 90.6 40.3 195 316-510 535-761 (903)
91 PF04733 Coatomer_E: Coatomer 99.0 8.9E-08 1.9E-12 89.4 19.4 247 220-508 9-264 (290)
92 PF04733 Coatomer_E: Coatomer 99.0 9.4E-08 2E-12 89.2 19.3 186 214-405 37-228 (290)
93 KOG1127 TPR repeat-containing 98.9 1.6E-06 3.5E-11 89.0 28.3 460 26-507 474-994 (1238)
94 KOG3616 Selective LIM binding 98.9 7.9E-06 1.7E-10 81.2 31.6 261 219-511 739-1026(1636)
95 KOG0548 Molecular co-chaperone 98.9 2E-06 4.4E-11 82.6 26.8 167 318-493 304-473 (539)
96 KOG0985 Vesicle coat protein c 98.9 8.4E-05 1.8E-09 76.8 39.1 218 14-237 485-749 (1666)
97 KOG2376 Signal recognition par 98.9 3.2E-05 6.9E-10 75.4 34.6 408 83-508 19-486 (652)
98 KOG4340 Uncharacterized conser 98.9 1.4E-06 3E-11 77.3 22.6 412 44-508 13-442 (459)
99 PRK10370 formate-dependent nit 98.8 5.5E-07 1.2E-11 79.4 18.5 148 350-511 23-175 (198)
100 KOG3617 WD40 and TPR repeat-co 98.8 1.1E-05 2.3E-10 81.4 28.7 240 8-270 724-994 (1416)
101 KOG1070 rRNA processing protei 98.8 6.1E-07 1.3E-11 95.0 21.2 208 300-512 1446-1666(1710)
102 TIGR03302 OM_YfiO outer membra 98.8 7.3E-07 1.6E-11 82.0 19.7 182 310-509 31-232 (235)
103 KOG3616 Selective LIM binding 98.8 1.9E-05 4.2E-10 78.5 29.5 190 289-505 743-933 (1636)
104 cd05804 StaR_like StaR_like; a 98.8 2.4E-05 5.1E-10 77.2 30.1 298 143-476 7-337 (355)
105 KOG4340 Uncharacterized conser 98.8 6E-06 1.3E-10 73.3 22.4 300 180-504 13-334 (459)
106 PRK15359 type III secretion sy 98.7 2.7E-07 5.8E-12 76.9 13.4 92 417-508 27-120 (144)
107 KOG0624 dsRNA-activated protei 98.7 3.5E-05 7.6E-10 70.0 27.0 312 145-484 41-379 (504)
108 KOG3617 WD40 and TPR repeat-co 98.7 0.00012 2.5E-09 74.2 33.0 25 481-505 1146-1170(1416)
109 PRK15359 type III secretion sy 98.7 3.9E-07 8.4E-12 75.9 13.6 123 364-492 14-138 (144)
110 KOG1914 mRNA cleavage and poly 98.7 0.00028 6.2E-09 68.3 33.8 409 8-440 18-498 (656)
111 PLN02789 farnesyltranstransfer 98.7 1E-05 2.3E-10 76.6 24.0 225 245-507 39-300 (320)
112 KOG1128 Uncharacterized conser 98.7 6.3E-07 1.4E-11 89.0 16.0 198 307-513 393-620 (777)
113 PRK04841 transcriptional regul 98.7 3.9E-05 8.4E-10 85.8 31.9 158 250-407 580-760 (903)
114 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.4E-13 59.4 3.1 34 4-37 1-34 (34)
115 KOG1125 TPR repeat-containing 98.7 2.3E-06 4.9E-11 83.0 18.1 246 252-501 294-563 (579)
116 KOG1128 Uncharacterized conser 98.6 2.7E-06 5.8E-11 84.7 18.8 187 284-477 430-618 (777)
117 PRK15179 Vi polysaccharide bio 98.6 3E-06 6.4E-11 88.5 20.1 130 343-476 86-218 (694)
118 PRK15363 pathogenicity island 98.6 9.2E-07 2E-11 72.2 12.8 118 414-554 35-154 (157)
119 COG5010 TadD Flp pilus assembl 98.6 2.1E-06 4.5E-11 75.3 14.9 126 382-509 70-197 (257)
120 PRK10370 formate-dependent nit 98.6 9.6E-06 2.1E-10 71.5 19.0 155 319-484 23-182 (198)
121 PF12854 PPR_1: PPR repeat 98.6 9.6E-08 2.1E-12 56.5 4.0 33 106-138 2-34 (34)
122 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.5E-10 70.8 18.5 156 347-505 70-227 (257)
123 KOG1070 rRNA processing protei 98.5 2.9E-05 6.2E-10 82.9 23.6 219 176-395 1457-1688(1710)
124 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3.1E-10 73.4 18.6 181 276-477 31-234 (235)
125 TIGR02552 LcrH_SycD type III s 98.5 2.5E-06 5.4E-11 70.7 12.0 97 414-510 17-115 (135)
126 COG4783 Putative Zn-dependent 98.5 0.0003 6.4E-09 67.6 26.6 135 353-509 316-454 (484)
127 PLN02789 farnesyltranstransfer 98.5 3.5E-05 7.5E-10 73.1 20.6 190 316-508 41-249 (320)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.4E-06 1.6E-10 79.2 14.7 123 380-507 171-295 (395)
129 PRK14720 transcript cleavage f 98.4 5.3E-05 1.2E-09 80.2 22.0 234 211-492 30-269 (906)
130 KOG1914 mRNA cleavage and poly 98.4 0.0026 5.7E-08 61.9 34.7 439 38-505 17-535 (656)
131 KOG3081 Vesicle coat complex C 98.4 0.00026 5.6E-09 62.4 22.3 155 319-480 115-276 (299)
132 COG4783 Putative Zn-dependent 98.4 5E-05 1.1E-09 72.7 19.4 120 387-508 315-436 (484)
133 KOG0550 Molecular chaperone (D 98.3 6.7E-05 1.4E-09 70.1 17.7 162 344-509 169-350 (486)
134 TIGR02552 LcrH_SycD type III s 98.3 2E-05 4.3E-10 65.3 13.4 115 365-483 5-122 (135)
135 KOG3060 Uncharacterized conser 98.3 0.00013 2.8E-09 63.8 18.0 102 391-494 99-202 (289)
136 PF13414 TPR_11: TPR repeat; P 98.3 2.1E-06 4.6E-11 61.4 6.0 65 445-509 2-67 (69)
137 PRK15179 Vi polysaccharide bio 98.3 0.00014 3.1E-09 76.3 21.6 144 306-453 80-229 (694)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.1E-05 1.5E-09 72.5 16.1 127 313-442 170-296 (395)
139 PF09976 TPR_21: Tetratricopep 98.2 7.6E-05 1.7E-09 62.4 14.4 115 391-506 24-144 (145)
140 TIGR00756 PPR pentatricopeptid 98.2 3.2E-06 6.9E-11 50.9 4.2 35 42-76 1-35 (35)
141 PF12895 Apc3: Anaphase-promot 98.2 3.4E-06 7.3E-11 63.0 5.2 78 427-505 2-83 (84)
142 PLN03088 SGT1, suppressor of 98.2 4.4E-05 9.6E-10 74.3 14.3 88 421-508 9-98 (356)
143 KOG3060 Uncharacterized conser 98.2 0.00022 4.9E-09 62.3 16.7 151 356-508 25-182 (289)
144 TIGR00756 PPR pentatricopeptid 98.1 3.7E-06 8E-11 50.6 4.1 35 143-177 1-35 (35)
145 PF13432 TPR_16: Tetratricopep 98.1 7.1E-06 1.5E-10 57.8 6.2 59 452-510 3-61 (65)
146 cd00189 TPR Tetratricopeptide 98.1 2.8E-05 6.2E-10 59.5 10.2 94 416-509 2-97 (100)
147 KOG0553 TPR repeat-containing 98.1 2.7E-05 5.9E-10 69.8 10.9 96 388-486 91-189 (304)
148 KOG2053 Mitochondrial inherita 98.1 0.018 4E-07 59.7 36.6 121 23-146 22-149 (932)
149 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.7E-05 1E-09 61.4 10.9 94 416-509 4-105 (119)
150 PF09976 TPR_21: Tetratricopep 98.1 0.00028 6E-09 59.1 15.6 125 346-473 15-145 (145)
151 PF13812 PPR_3: Pentatricopept 98.1 5.8E-06 1.3E-10 49.3 3.8 33 42-74 2-34 (34)
152 KOG0553 TPR repeat-containing 98.1 4.6E-05 1E-09 68.4 10.8 100 351-454 89-190 (304)
153 KOG3081 Vesicle coat complex C 98.0 0.00094 2E-08 59.0 18.3 244 250-508 15-270 (299)
154 PRK14720 transcript cleavage f 98.0 0.0028 6E-08 67.6 24.8 232 78-354 33-268 (906)
155 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 47.9 4.6 33 344-376 2-34 (34)
156 PRK15331 chaperone protein Sic 98.0 0.00018 3.9E-09 59.2 12.7 90 419-508 42-133 (165)
157 PF14559 TPR_19: Tetratricopep 97.9 2.8E-05 6.1E-10 55.3 6.3 52 457-508 2-53 (68)
158 PRK02603 photosystem I assembl 97.9 0.00013 2.8E-09 63.2 11.5 95 414-508 35-148 (172)
159 COG4235 Cytochrome c biogenesi 97.9 0.00015 3.3E-09 65.6 12.0 106 411-516 153-263 (287)
160 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00018 4E-09 57.8 11.6 105 380-484 4-114 (119)
161 PLN03088 SGT1, suppressor of 97.9 0.00025 5.4E-09 69.1 13.5 106 386-493 10-117 (356)
162 CHL00033 ycf3 photosystem I as 97.9 0.00016 3.5E-09 62.3 10.8 93 414-506 35-139 (168)
163 PF13371 TPR_9: Tetratricopept 97.9 4.6E-05 9.9E-10 55.1 6.3 59 453-511 2-60 (73)
164 KOG2053 Mitochondrial inherita 97.8 0.058 1.3E-06 56.2 42.3 218 51-273 19-256 (932)
165 PRK10153 DNA-binding transcrip 97.8 0.0012 2.6E-08 67.2 17.2 63 447-510 421-483 (517)
166 COG3898 Uncharacterized membra 97.8 0.036 7.9E-07 52.0 27.0 288 225-527 97-408 (531)
167 PF13431 TPR_17: Tetratricopep 97.8 2E-05 4.3E-10 46.5 2.4 33 469-501 2-34 (34)
168 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8E-10 44.6 3.2 31 143-173 1-31 (31)
169 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.3E-10 44.3 3.4 30 42-71 1-30 (31)
170 cd00189 TPR Tetratricopeptide 97.7 0.00041 8.9E-09 52.8 10.0 91 385-477 7-99 (100)
171 PF05843 Suf: Suppressor of fo 97.7 0.0014 2.9E-08 61.6 15.1 135 344-481 2-142 (280)
172 PRK02603 photosystem I assembl 97.7 0.0011 2.4E-08 57.3 13.4 130 343-495 35-166 (172)
173 PF13432 TPR_16: Tetratricopep 97.7 0.00013 2.7E-09 51.3 6.0 61 420-480 3-65 (65)
174 PF12895 Apc3: Anaphase-promot 97.7 0.00013 2.9E-09 54.3 6.2 79 356-438 2-82 (84)
175 CHL00033 ycf3 photosystem I as 97.7 0.0027 5.9E-08 54.7 15.1 80 344-425 36-117 (168)
176 COG4700 Uncharacterized protei 97.6 0.012 2.5E-07 49.3 17.2 132 374-507 85-220 (251)
177 PRK10153 DNA-binding transcrip 97.6 0.0019 4.1E-08 65.8 15.8 142 340-483 334-490 (517)
178 KOG1130 Predicted G-alpha GTPa 97.6 0.00038 8.3E-09 65.0 9.7 129 379-507 196-342 (639)
179 KOG2041 WD40 repeat protein [G 97.6 0.11 2.3E-06 52.7 26.8 361 73-474 689-1085(1189)
180 KOG0543 FKBP-type peptidyl-pro 97.6 0.00059 1.3E-08 64.3 10.6 85 446-556 257-341 (397)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00013 2.8E-09 51.8 4.9 62 426-487 3-66 (68)
182 PF14432 DYW_deaminase: DYW fa 97.6 4E-05 8.8E-10 60.3 2.4 68 515-586 1-74 (116)
183 COG3898 Uncharacterized membra 97.5 0.087 1.9E-06 49.6 27.8 297 144-452 84-401 (531)
184 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00044 9.5E-09 66.7 8.5 65 445-509 74-141 (453)
185 PF14938 SNAP: Soluble NSF att 97.4 0.083 1.8E-06 49.8 23.0 24 248-271 160-183 (282)
186 PF07079 DUF1347: Protein of u 97.4 0.13 2.9E-06 49.5 30.8 418 20-451 16-530 (549)
187 PF13414 TPR_11: TPR repeat; P 97.4 0.00036 7.8E-09 49.6 5.4 65 413-477 2-69 (69)
188 PF04840 Vps16_C: Vps16, C-ter 97.4 0.13 2.8E-06 49.0 30.0 104 319-439 184-287 (319)
189 PF13428 TPR_14: Tetratricopep 97.4 0.00027 5.8E-09 44.8 4.1 42 447-488 2-43 (44)
190 PRK10803 tol-pal system protei 97.4 0.0015 3.2E-08 60.2 10.5 93 416-508 145-245 (263)
191 PF05843 Suf: Suppressor of fo 97.4 0.0044 9.5E-08 58.2 13.9 127 245-372 3-136 (280)
192 KOG1258 mRNA processing protei 97.4 0.19 4E-06 50.4 30.3 405 40-494 44-489 (577)
193 PF14938 SNAP: Soluble NSF att 97.4 0.033 7.2E-07 52.5 19.5 26 381-406 158-183 (282)
194 PF08579 RPM2: Mitochondrial r 97.4 0.002 4.3E-08 49.0 8.7 81 43-123 27-116 (120)
195 PF12688 TPR_5: Tetratrico pep 97.4 0.0026 5.6E-08 50.4 9.9 88 420-507 7-102 (120)
196 PRK10866 outer membrane biogen 97.3 0.044 9.6E-07 50.1 19.1 55 453-507 182-239 (243)
197 PF10037 MRP-S27: Mitochondria 97.3 0.0033 7.2E-08 61.4 11.8 119 107-225 62-186 (429)
198 PF12688 TPR_5: Tetratrico pep 97.2 0.01 2.2E-07 47.1 12.0 58 248-305 6-65 (120)
199 PF10037 MRP-S27: Mitochondria 97.2 0.0026 5.7E-08 62.1 10.4 95 44-138 69-165 (429)
200 PRK15363 pathogenicity island 97.2 0.011 2.5E-07 48.6 12.2 90 385-476 42-133 (157)
201 PF13424 TPR_12: Tetratricopep 97.2 0.0007 1.5E-08 49.6 4.6 62 447-508 6-74 (78)
202 PF13371 TPR_9: Tetratricopept 97.1 0.0018 3.8E-08 46.7 6.6 66 421-486 2-69 (73)
203 COG4700 Uncharacterized protei 97.1 0.088 1.9E-06 44.2 16.8 97 275-371 86-188 (251)
204 PRK10866 outer membrane biogen 97.1 0.083 1.8E-06 48.3 18.9 55 218-272 38-98 (243)
205 PRK10803 tol-pal system protei 97.1 0.0077 1.7E-07 55.5 12.0 102 380-481 145-252 (263)
206 KOG2280 Vacuolar assembly/sort 97.1 0.42 9.1E-06 49.2 29.6 335 70-437 426-793 (829)
207 PF13281 DUF4071: Domain of un 97.1 0.056 1.2E-06 51.9 17.8 162 316-480 145-339 (374)
208 PF07079 DUF1347: Protein of u 97.1 0.32 6.9E-06 47.0 34.1 434 51-507 16-522 (549)
209 KOG2796 Uncharacterized conser 97.1 0.08 1.7E-06 47.1 16.8 231 244-480 70-320 (366)
210 PF13525 YfiO: Outer membrane 97.1 0.039 8.5E-07 49.1 15.7 49 453-501 148-199 (203)
211 PF08579 RPM2: Mitochondrial r 97.1 0.011 2.3E-07 45.2 10.0 80 346-426 28-116 (120)
212 KOG0550 Molecular chaperone (D 97.0 0.17 3.6E-06 48.2 19.5 86 352-440 258-347 (486)
213 PF03704 BTAD: Bacterial trans 97.0 0.022 4.7E-07 47.7 12.5 61 448-508 64-124 (146)
214 KOG0543 FKBP-type peptidyl-pro 96.9 0.014 3.1E-07 55.3 11.8 93 416-508 259-354 (397)
215 KOG4555 TPR repeat-containing 96.9 0.011 2.4E-07 46.1 9.1 90 422-511 51-146 (175)
216 KOG1538 Uncharacterized conser 96.9 0.22 4.8E-06 50.1 19.7 56 317-372 778-846 (1081)
217 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.51 1.1E-05 45.6 31.7 135 342-480 396-536 (660)
218 PF13525 YfiO: Outer membrane 96.8 0.16 3.6E-06 45.1 17.5 140 349-508 11-169 (203)
219 KOG2796 Uncharacterized conser 96.8 0.062 1.3E-06 47.7 13.9 234 41-282 69-323 (366)
220 PF06239 ECSIT: Evolutionarily 96.8 0.0095 2.1E-07 51.5 8.7 89 139-227 44-153 (228)
221 PRK11906 transcriptional regul 96.8 0.03 6.5E-07 54.5 13.1 63 445-507 337-399 (458)
222 PF06239 ECSIT: Evolutionarily 96.7 0.019 4.2E-07 49.7 10.3 97 332-429 34-153 (228)
223 KOG1538 Uncharacterized conser 96.7 0.32 7E-06 49.0 19.8 103 175-302 554-656 (1081)
224 PF04840 Vps16_C: Vps16, C-ter 96.6 0.67 1.5E-05 44.2 30.3 106 216-336 181-286 (319)
225 COG4235 Cytochrome c biogenesi 96.6 0.081 1.7E-06 48.4 13.8 104 375-480 153-261 (287)
226 KOG1130 Predicted G-alpha GTPa 96.5 0.017 3.6E-07 54.5 9.1 127 280-406 197-343 (639)
227 PF13424 TPR_12: Tetratricopep 96.4 0.0048 1E-07 45.0 4.4 61 415-475 6-75 (78)
228 KOG4234 TPR repeat-containing 96.4 0.026 5.7E-07 47.8 8.7 90 422-511 103-199 (271)
229 COG3118 Thioredoxin domain-con 96.4 0.29 6.3E-06 44.7 15.8 121 386-509 142-265 (304)
230 PF12921 ATP13: Mitochondrial 96.3 0.049 1.1E-06 43.7 9.8 97 312-424 2-98 (126)
231 KOG1941 Acetylcholine receptor 96.2 0.08 1.7E-06 49.3 11.5 162 345-506 85-272 (518)
232 KOG2041 WD40 repeat protein [G 96.2 1.9 4.1E-05 44.3 28.7 205 108-344 689-910 (1189)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.037 7.9E-07 53.9 9.3 62 414-475 75-141 (453)
234 PF13512 TPR_18: Tetratricopep 96.1 0.13 2.7E-06 41.8 10.7 88 421-508 17-127 (142)
235 PF00515 TPR_1: Tetratricopept 96.1 0.0093 2E-07 35.1 3.4 32 447-478 2-33 (34)
236 PF02259 FAT: FAT domain; Int 96.0 0.98 2.1E-05 44.3 19.6 150 341-493 144-305 (352)
237 PF07719 TPR_2: Tetratricopept 95.9 0.015 3.3E-07 34.1 4.0 32 448-479 3-34 (34)
238 COG5107 RNA14 Pre-mRNA 3'-end 95.9 1.8 3.9E-05 42.0 32.0 127 380-508 399-530 (660)
239 PF09205 DUF1955: Domain of un 95.9 0.51 1.1E-05 37.3 12.9 140 354-512 13-152 (161)
240 COG4105 ComL DNA uptake lipopr 95.9 1.2 2.6E-05 40.1 17.1 136 350-509 41-196 (254)
241 KOG1585 Protein required for f 95.9 0.57 1.2E-05 41.4 14.6 143 345-504 93-251 (308)
242 COG1729 Uncharacterized protei 95.8 0.06 1.3E-06 48.6 8.9 57 452-508 184-243 (262)
243 COG1729 Uncharacterized protei 95.8 0.097 2.1E-06 47.3 10.1 95 346-441 145-242 (262)
244 PF03704 BTAD: Bacterial trans 95.6 0.14 3E-06 42.8 10.1 71 346-417 65-139 (146)
245 PRK15331 chaperone protein Sic 95.6 0.38 8.2E-06 40.1 11.8 85 354-441 48-132 (165)
246 PF10300 DUF3808: Protein of u 95.5 0.91 2E-05 46.2 17.2 115 391-508 246-375 (468)
247 COG0457 NrfG FOG: TPR repeat [ 95.5 1.8 3.9E-05 38.9 27.2 195 312-508 59-264 (291)
248 PF13512 TPR_18: Tetratricopep 95.4 0.51 1.1E-05 38.4 11.9 112 353-480 20-133 (142)
249 PRK11906 transcriptional regul 95.4 0.84 1.8E-05 44.9 15.5 143 359-504 274-431 (458)
250 KOG1920 IkappaB kinase complex 95.4 5.3 0.00012 43.9 23.1 24 215-238 793-818 (1265)
251 COG0457 NrfG FOG: TPR repeat [ 95.4 2 4.2E-05 38.7 25.7 192 285-478 66-268 (291)
252 PRK11619 lytic murein transgly 95.3 4.7 0.0001 42.8 29.4 113 357-472 255-372 (644)
253 COG3118 Thioredoxin domain-con 95.2 2 4.4E-05 39.5 16.1 154 351-506 142-299 (304)
254 KOG1258 mRNA processing protei 95.2 4.2 9E-05 41.3 25.3 121 378-500 297-420 (577)
255 PF04053 Coatomer_WDAD: Coatom 95.1 0.39 8.4E-06 48.1 12.8 134 351-510 269-403 (443)
256 smart00299 CLH Clathrin heavy 95.1 1.6 3.4E-05 36.1 15.2 85 348-441 12-96 (140)
257 KOG4555 TPR repeat-containing 95.0 0.072 1.6E-06 41.8 5.6 56 453-508 50-105 (175)
258 KOG2610 Uncharacterized conser 94.8 0.42 9E-06 44.3 10.8 159 355-516 115-283 (491)
259 PF09613 HrpB1_HrpK: Bacterial 94.8 1.4 3E-05 36.6 12.9 90 385-477 17-108 (160)
260 PF08631 SPO22: Meiosis protei 94.7 3.8 8.3E-05 38.5 23.8 17 456-472 256-272 (278)
261 KOG2280 Vacuolar assembly/sort 94.7 6.4 0.00014 41.0 33.8 113 377-505 683-795 (829)
262 PF13281 DUF4071: Domain of un 94.7 4.4 9.5E-05 39.3 17.9 161 348-509 146-334 (374)
263 PF13176 TPR_7: Tetratricopept 94.6 0.082 1.8E-06 31.5 4.0 26 482-507 1-26 (36)
264 KOG3941 Intermediate in Toll s 94.6 0.38 8.3E-06 43.4 9.7 110 330-440 52-185 (406)
265 KOG1941 Acetylcholine receptor 94.5 4.5 9.7E-05 38.3 16.8 20 481-500 332-351 (518)
266 PF04184 ST7: ST7 protein; In 94.4 3 6.5E-05 41.3 16.2 102 379-480 260-380 (539)
267 PF04053 Coatomer_WDAD: Coatom 94.4 0.88 1.9E-05 45.6 13.2 156 50-237 270-427 (443)
268 PF13181 TPR_8: Tetratricopept 94.3 0.059 1.3E-06 31.6 3.0 31 448-478 3-33 (34)
269 smart00299 CLH Clathrin heavy 94.3 2.6 5.7E-05 34.7 15.1 84 81-168 12-95 (140)
270 KOG0890 Protein kinase of the 94.2 16 0.00036 43.6 31.4 280 214-510 1422-1732(2382)
271 COG4105 ComL DNA uptake lipopr 94.1 4.3 9.3E-05 36.7 17.9 169 320-508 42-232 (254)
272 PF12921 ATP13: Mitochondrial 94.1 0.87 1.9E-05 36.6 10.2 96 277-389 1-99 (126)
273 COG4785 NlpI Lipoprotein NlpI, 94.1 3.7 8.1E-05 35.9 14.6 178 325-508 78-265 (297)
274 PF10300 DUF3808: Protein of u 93.9 3.5 7.6E-05 42.0 16.6 112 293-405 248-374 (468)
275 KOG4648 Uncharacterized conser 93.9 0.15 3.2E-06 47.2 5.9 111 385-502 104-217 (536)
276 PF04184 ST7: ST7 protein; In 93.8 1.8 3.9E-05 42.8 13.4 59 448-506 261-321 (539)
277 KOG3941 Intermediate in Toll s 93.7 0.44 9.6E-06 43.0 8.5 98 130-227 53-173 (406)
278 PF13176 TPR_7: Tetratricopept 93.6 0.091 2E-06 31.3 3.0 28 448-475 1-28 (36)
279 KOG2610 Uncharacterized conser 93.6 2.6 5.6E-05 39.3 13.3 155 324-482 115-285 (491)
280 KOG2114 Vacuolar assembly/sort 93.5 12 0.00026 39.7 27.4 53 420-473 711-763 (933)
281 PF07035 Mic1: Colon cancer-as 93.4 3.1 6.7E-05 35.2 12.6 134 61-206 14-149 (167)
282 KOG2114 Vacuolar assembly/sort 93.4 13 0.00027 39.6 20.8 116 15-138 339-458 (933)
283 PF13428 TPR_14: Tetratricopep 93.3 0.18 3.9E-06 31.7 4.2 32 480-511 1-32 (44)
284 PF09613 HrpB1_HrpK: Bacterial 93.0 0.7 1.5E-05 38.4 8.0 50 458-507 22-71 (160)
285 KOG1920 IkappaB kinase complex 93.0 18 0.00039 40.2 24.2 113 320-443 916-1028(1265)
286 PF02259 FAT: FAT domain; Int 92.9 8.1 0.00018 37.7 17.3 68 444-511 144-215 (352)
287 PF07719 TPR_2: Tetratricopept 92.8 0.21 4.5E-06 29.1 3.7 29 481-509 2-30 (34)
288 TIGR02561 HrpB1_HrpK type III 92.7 0.57 1.2E-05 38.2 6.9 53 458-510 22-74 (153)
289 COG3629 DnrI DNA-binding trans 92.7 0.59 1.3E-05 43.1 7.9 61 448-508 155-215 (280)
290 KOG1464 COP9 signalosome, subu 92.6 7.8 0.00017 35.1 16.5 237 225-468 40-325 (440)
291 PF00515 TPR_1: Tetratricopept 92.4 0.26 5.7E-06 28.7 3.7 30 481-510 2-31 (34)
292 PRK10941 hypothetical protein; 92.3 0.99 2.1E-05 41.7 9.1 62 448-509 183-244 (269)
293 KOG4648 Uncharacterized conser 92.2 0.54 1.2E-05 43.7 7.0 87 350-447 104-199 (536)
294 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 1.1 2.5E-05 29.3 6.7 50 482-557 3-52 (53)
295 COG4649 Uncharacterized protei 91.9 4.1 9E-05 34.2 11.0 117 224-340 70-195 (221)
296 PRK09687 putative lyase; Provi 91.8 11 0.00025 35.3 26.9 233 210-455 35-276 (280)
297 KOG1308 Hsp70-interacting prot 90.6 0.13 2.8E-06 47.7 1.5 102 426-527 126-229 (377)
298 PF07721 TPR_4: Tetratricopept 90.6 0.44 9.5E-06 25.8 3.0 24 481-504 2-25 (26)
299 PF11207 DUF2989: Protein of u 90.5 1.5 3.4E-05 37.9 7.8 75 425-500 118-198 (203)
300 PF06552 TOM20_plant: Plant sp 90.5 2 4.3E-05 36.4 8.2 33 462-494 51-83 (186)
301 COG4785 NlpI Lipoprotein NlpI, 90.5 12 0.00025 33.0 14.4 178 291-476 78-267 (297)
302 PF13170 DUF4003: Protein of u 90.4 8.9 0.00019 36.2 13.5 137 260-429 79-232 (297)
303 PF13181 TPR_8: Tetratricopept 90.3 0.72 1.6E-05 26.7 4.2 28 481-508 2-29 (34)
304 PF13374 TPR_10: Tetratricopep 90.3 0.57 1.2E-05 28.7 3.9 28 481-508 3-30 (42)
305 KOG3364 Membrane protein invol 90.1 3.7 8.1E-05 32.9 8.8 48 461-508 50-99 (149)
306 PF10602 RPN7: 26S proteasome 90.0 5.3 0.00012 34.4 10.9 94 345-440 38-139 (177)
307 KOG2066 Vacuolar assembly/sort 90.0 29 0.00062 36.8 25.5 102 83-189 363-467 (846)
308 COG3629 DnrI DNA-binding trans 89.9 1.8 3.8E-05 40.0 8.1 74 113-186 155-236 (280)
309 PRK15180 Vi polysaccharide bio 89.8 5.9 0.00013 39.0 11.7 88 389-478 334-423 (831)
310 TIGR02561 HrpB1_HrpK type III 89.7 7.9 0.00017 31.8 10.6 68 389-459 21-90 (153)
311 PF09205 DUF1955: Domain of un 89.3 9.8 0.00021 30.5 15.1 83 325-410 69-151 (161)
312 PF14853 Fis1_TPR_C: Fis1 C-te 89.3 1.3 2.7E-05 29.2 4.9 36 450-485 5-40 (53)
313 COG2976 Uncharacterized protei 89.2 14 0.0003 32.0 13.7 114 361-478 70-191 (207)
314 PF13174 TPR_6: Tetratricopept 89.1 0.54 1.2E-05 27.0 2.9 23 485-507 5-27 (33)
315 PRK09687 putative lyase; Provi 88.9 21 0.00045 33.6 26.4 74 311-389 205-278 (280)
316 PF10602 RPN7: 26S proteasome 88.9 4.6 0.0001 34.8 9.6 95 313-407 37-142 (177)
317 KOG4234 TPR repeat-containing 88.6 5.7 0.00012 34.3 9.5 102 388-489 105-211 (271)
318 KOG0376 Serine-threonine phosp 88.6 1.2 2.6E-05 43.7 6.3 88 421-508 11-100 (476)
319 PF13174 TPR_6: Tetratricopept 88.4 0.63 1.4E-05 26.7 2.9 30 449-478 3-32 (33)
320 smart00028 TPR Tetratricopepti 88.4 0.82 1.8E-05 25.5 3.5 29 449-477 4-32 (34)
321 COG2976 Uncharacterized protei 88.4 16 0.00034 31.6 12.3 90 420-510 95-189 (207)
322 PF00637 Clathrin: Region in C 88.1 0.71 1.5E-05 38.3 4.1 50 48-97 14-63 (143)
323 KOG4279 Serine/threonine prote 87.8 19 0.00042 37.7 14.2 101 353-480 297-400 (1226)
324 KOG1585 Protein required for f 87.7 20 0.00044 32.2 17.3 24 381-404 193-216 (308)
325 PF04097 Nic96: Nup93/Nic96; 87.4 43 0.00094 35.6 23.2 86 250-340 265-355 (613)
326 KOG4642 Chaperone-dependent E3 87.1 1.6 3.6E-05 38.6 5.6 52 455-506 53-104 (284)
327 KOG2066 Vacuolar assembly/sort 87.0 45 0.00098 35.4 19.0 128 213-343 393-536 (846)
328 TIGR02508 type_III_yscG type I 86.9 10 0.00023 28.5 8.8 63 218-283 45-107 (115)
329 KOG4570 Uncharacterized conser 86.9 8.1 0.00018 35.9 10.0 100 106-207 59-165 (418)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 4.8 0.0001 30.1 7.0 62 359-422 23-84 (103)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 86.6 4.2 9.1E-05 30.4 6.6 61 57-119 23-84 (103)
332 PF13170 DUF4003: Protein of u 86.6 13 0.00029 35.1 11.9 125 58-184 79-224 (297)
333 KOG0276 Vesicle coat complex C 86.2 13 0.00028 38.0 11.8 124 225-373 599-722 (794)
334 PF14561 TPR_20: Tetratricopep 86.1 2.7 5.9E-05 31.4 5.8 44 466-509 8-51 (90)
335 PF02284 COX5A: Cytochrome c o 86.0 4.8 0.0001 30.4 6.7 60 361-422 28-87 (108)
336 KOG0276 Vesicle coat complex C 85.1 20 0.00042 36.7 12.4 149 324-505 598-746 (794)
337 PF13374 TPR_10: Tetratricopep 85.0 1.5 3.3E-05 26.7 3.5 29 447-475 3-31 (42)
338 PRK15180 Vi polysaccharide bio 84.7 5.6 0.00012 39.1 8.5 136 323-461 300-442 (831)
339 PF00637 Clathrin: Region in C 84.3 1.5 3.2E-05 36.3 4.1 51 149-199 14-64 (143)
340 PF13431 TPR_17: Tetratricopep 83.7 1.8 3.9E-05 25.3 3.1 27 306-332 7-33 (34)
341 PF10345 Cohesin_load: Cohesin 83.5 67 0.0015 34.3 36.7 189 40-238 29-251 (608)
342 COG4649 Uncharacterized protei 83.4 27 0.00058 29.6 15.8 119 353-474 68-195 (221)
343 KOG0545 Aryl-hydrocarbon recep 83.1 35 0.00076 30.7 12.6 58 451-508 235-292 (329)
344 KOG1550 Extracellular protein 83.1 65 0.0014 33.9 16.4 151 354-511 260-428 (552)
345 KOG1586 Protein required for f 82.9 35 0.00076 30.5 13.4 88 392-479 128-228 (288)
346 KOG4570 Uncharacterized conser 82.0 7.4 0.00016 36.1 7.7 97 40-138 63-162 (418)
347 PF06552 TOM20_plant: Plant sp 82.0 16 0.00034 31.2 9.0 45 462-513 96-140 (186)
348 COG1747 Uncharacterized N-term 81.9 61 0.0013 32.7 22.6 184 298-488 51-247 (711)
349 KOG1586 Protein required for f 81.7 39 0.00084 30.3 15.6 90 419-508 118-223 (288)
350 TIGR03504 FimV_Cterm FimV C-te 81.5 3.3 7.2E-05 25.9 3.8 27 484-510 3-29 (44)
351 PF02284 COX5A: Cytochrome c o 81.0 11 0.00023 28.7 6.8 59 261-319 28-86 (108)
352 smart00028 TPR Tetratricopepti 81.0 3.2 7E-05 22.8 3.7 28 481-508 2-29 (34)
353 TIGR02508 type_III_yscG type I 81.0 22 0.00047 26.9 9.2 61 319-382 46-106 (115)
354 PRK12798 chemotaxis protein; R 80.9 60 0.0013 31.9 20.3 179 325-506 125-321 (421)
355 COG3947 Response regulator con 80.7 6.5 0.00014 36.1 6.8 59 449-507 282-340 (361)
356 COG5159 RPN6 26S proteasome re 80.7 47 0.001 30.6 17.5 123 316-438 129-270 (421)
357 PF07721 TPR_4: Tetratricopept 79.7 3.7 8.1E-05 22.1 3.3 20 419-438 6-25 (26)
358 COG2909 MalT ATP-dependent tra 79.4 1E+02 0.0022 33.6 25.0 188 320-511 423-649 (894)
359 PF09477 Type_III_YscG: Bacter 79.2 26 0.00057 26.9 9.1 87 191-281 20-106 (116)
360 KOG2300 Uncharacterized conser 78.8 75 0.0016 31.9 28.4 115 390-507 335-472 (629)
361 smart00386 HAT HAT (Half-A-TPR 78.3 3.9 8.4E-05 23.0 3.4 30 460-489 1-30 (33)
362 PRK11619 lytic murein transgly 78.3 1E+02 0.0022 33.1 37.2 370 114-501 102-497 (644)
363 COG4455 ImpE Protein of avirul 78.2 49 0.0011 29.3 11.7 123 346-480 4-139 (273)
364 COG4455 ImpE Protein of avirul 77.9 8.3 0.00018 33.8 6.3 64 417-480 4-69 (273)
365 PF08631 SPO22: Meiosis protei 77.2 65 0.0014 30.2 24.7 18 351-368 254-271 (278)
366 PF12862 Apc5: Anaphase-promot 77.1 6.9 0.00015 29.5 5.3 53 456-508 8-69 (94)
367 KOG1550 Extracellular protein 76.1 1.1E+02 0.0023 32.2 22.1 177 327-509 343-538 (552)
368 PF11207 DUF2989: Protein of u 76.0 29 0.00062 30.4 9.1 72 58-130 123-197 (203)
369 PRK13800 putative oxidoreducta 75.9 1.4E+02 0.0031 33.6 25.7 159 335-507 720-879 (897)
370 PF13929 mRNA_stabil: mRNA sta 75.6 46 0.001 31.0 10.7 120 44-166 134-262 (292)
371 PF07035 Mic1: Colon cancer-as 75.5 50 0.0011 28.1 15.5 56 216-271 93-148 (167)
372 PF09670 Cas_Cas02710: CRISPR- 75.4 46 0.00099 32.9 11.7 53 353-406 141-197 (379)
373 KOG2396 HAT (Half-A-TPR) repea 74.6 1E+02 0.0022 31.2 27.8 66 40-106 104-170 (568)
374 cd00280 TRFH Telomeric Repeat 74.3 15 0.00033 31.3 6.8 47 452-499 117-163 (200)
375 KOG0890 Protein kinase of the 74.3 2.2E+02 0.0048 35.0 28.8 155 87-249 1394-1552(2382)
376 PF10579 Rapsyn_N: Rapsyn N-te 73.9 7.4 0.00016 27.9 4.2 45 458-502 18-65 (80)
377 PF13762 MNE1: Mitochondrial s 73.8 12 0.00026 30.7 6.0 82 43-124 41-128 (145)
378 KOG0551 Hsp90 co-chaperone CNS 73.2 15 0.00032 34.6 7.0 91 416-506 83-179 (390)
379 PF12968 DUF3856: Domain of Un 72.7 42 0.0009 26.5 8.2 62 445-506 54-126 (144)
380 PF13934 ELYS: Nuclear pore co 72.5 57 0.0012 29.5 10.7 106 346-460 79-186 (226)
381 KOG2471 TPR repeat-containing 72.2 1.1E+02 0.0025 30.7 14.8 103 320-425 248-380 (696)
382 KOG4507 Uncharacterized conser 71.5 17 0.00037 37.0 7.5 99 390-491 619-721 (886)
383 KOG3824 Huntingtin interacting 70.6 12 0.00027 34.6 5.9 51 456-506 126-176 (472)
384 PHA02875 ankyrin repeat protei 70.1 84 0.0018 31.5 12.7 206 20-242 9-229 (413)
385 KOG1498 26S proteasome regulat 69.8 1.1E+02 0.0025 29.7 15.4 115 417-531 134-263 (439)
386 PF14863 Alkyl_sulf_dimr: Alky 69.4 19 0.00041 29.6 6.3 65 430-497 57-121 (141)
387 PF09986 DUF2225: Uncharacteri 68.8 42 0.00092 30.0 8.9 62 449-510 121-195 (214)
388 KOG2300 Uncharacterized conser 68.4 1.4E+02 0.003 30.1 26.8 86 15-100 54-151 (629)
389 PF10579 Rapsyn_N: Rapsyn N-te 67.7 14 0.0003 26.6 4.4 47 390-436 18-65 (80)
390 PF04190 DUF410: Protein of un 67.5 1.1E+02 0.0023 28.5 17.1 87 152-238 20-116 (260)
391 PF07720 TPR_3: Tetratricopept 67.4 14 0.00031 21.9 3.9 18 451-468 6-23 (36)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 66.2 60 0.0013 26.1 8.6 42 464-505 81-124 (126)
393 PF13762 MNE1: Mitochondrial s 65.9 54 0.0012 27.0 8.2 78 12-89 41-128 (145)
394 TIGR03504 FimV_Cterm FimV C-te 65.5 16 0.00035 22.8 4.0 24 349-372 5-28 (44)
395 COG2912 Uncharacterized conser 65.4 40 0.00086 31.0 8.0 59 450-508 185-243 (269)
396 PF04097 Nic96: Nup93/Nic96; 65.4 2E+02 0.0043 30.8 24.3 43 46-89 116-158 (613)
397 KOG3807 Predicted membrane pro 65.3 1.1E+02 0.0025 28.9 10.9 21 464-484 380-400 (556)
398 PF14561 TPR_20: Tetratricopep 65.0 56 0.0012 24.4 8.0 62 445-506 21-85 (90)
399 KOG4077 Cytochrome c oxidase, 64.7 49 0.0011 26.3 7.2 60 361-422 67-126 (149)
400 PF07575 Nucleopor_Nup85: Nup8 63.3 2.1E+02 0.0045 30.3 17.5 111 187-304 307-431 (566)
401 KOG3364 Membrane protein invol 63.0 60 0.0013 26.3 7.5 71 412-482 30-107 (149)
402 COG4976 Predicted methyltransf 62.3 18 0.00038 32.2 5.0 56 457-512 6-61 (287)
403 PRK10941 hypothetical protein; 62.3 74 0.0016 29.6 9.5 68 418-485 185-254 (269)
404 PHA02875 ankyrin repeat protei 61.0 1.9E+02 0.004 29.0 17.8 207 51-278 9-230 (413)
405 PF04910 Tcf25: Transcriptiona 60.8 1.7E+02 0.0038 28.7 13.1 55 453-507 110-166 (360)
406 PF13929 mRNA_stabil: mRNA sta 59.2 1.6E+02 0.0034 27.6 13.5 111 156-266 142-261 (292)
407 PF07163 Pex26: Pex26 protein; 58.4 72 0.0016 29.5 8.2 87 46-134 88-181 (309)
408 PF11846 DUF3366: Domain of un 58.2 45 0.00098 29.2 7.2 35 443-477 141-175 (193)
409 cd08819 CARD_MDA5_2 Caspase ac 57.4 74 0.0016 23.5 6.6 64 96-161 22-85 (88)
410 PF09477 Type_III_YscG: Bacter 56.2 92 0.002 24.1 8.6 53 319-373 47-99 (116)
411 COG4976 Predicted methyltransf 55.5 17 0.00037 32.2 3.8 56 424-479 5-62 (287)
412 PF11663 Toxin_YhaV: Toxin wit 54.6 20 0.00042 28.9 3.7 31 54-86 108-138 (140)
413 KOG2396 HAT (Half-A-TPR) repea 53.7 2.6E+02 0.0056 28.5 36.0 236 263-507 302-557 (568)
414 KOG2659 LisH motif-containing 53.3 1.3E+02 0.0029 26.9 8.9 93 344-439 27-128 (228)
415 PF10255 Paf67: RNA polymerase 53.1 82 0.0018 31.2 8.5 60 448-507 124-191 (404)
416 PF10366 Vps39_1: Vacuolar sor 53.0 66 0.0014 25.0 6.4 27 345-371 41-67 (108)
417 PF11846 DUF3366: Domain of un 53.0 45 0.00097 29.2 6.3 51 390-440 120-170 (193)
418 PF12862 Apc5: Anaphase-promot 52.9 49 0.0011 24.9 5.7 27 450-476 45-71 (94)
419 PF07163 Pex26: Pex26 protein; 52.3 1.4E+02 0.003 27.7 9.0 85 149-235 90-181 (309)
420 PF10366 Vps39_1: Vacuolar sor 52.1 89 0.0019 24.3 7.0 28 244-271 40-67 (108)
421 KOG4077 Cytochrome c oxidase, 51.9 86 0.0019 25.0 6.6 57 262-318 68-124 (149)
422 PF08424 NRDE-2: NRDE-2, neces 51.1 2.4E+02 0.0051 27.2 14.3 115 431-560 48-171 (321)
423 COG5191 Uncharacterized conser 50.9 42 0.0009 31.4 5.6 79 410-488 103-184 (435)
424 PF06957 COPI_C: Coatomer (COP 50.9 51 0.0011 32.8 6.7 43 437-479 289-333 (422)
425 KOG2471 TPR repeat-containing 50.8 2.8E+02 0.0062 28.1 12.5 105 389-493 251-382 (696)
426 KOG1524 WD40 repeat-containing 50.7 97 0.0021 31.4 8.4 89 413-504 572-668 (737)
427 KOG4521 Nuclear pore complex, 50.6 4.3E+02 0.0094 30.2 15.0 22 318-339 926-947 (1480)
428 cd00280 TRFH Telomeric Repeat 50.2 1E+02 0.0022 26.6 7.3 35 421-455 118-152 (200)
429 KOG0686 COP9 signalosome, subu 50.2 2.6E+02 0.0057 27.5 12.8 90 314-405 152-256 (466)
430 PRK13342 recombination factor 50.1 2.8E+02 0.0061 27.9 13.9 167 56-237 152-330 (413)
431 KOG4814 Uncharacterized conser 50.0 2.1E+02 0.0046 30.0 10.7 86 424-509 364-457 (872)
432 KOG0292 Vesicle coat complex C 50.0 22 0.00047 38.1 4.2 74 385-474 627-700 (1202)
433 KOG2063 Vacuolar assembly/sort 49.8 4.1E+02 0.0088 29.6 17.1 53 16-68 313-373 (877)
434 PF11663 Toxin_YhaV: Toxin wit 49.3 25 0.00054 28.3 3.5 34 152-187 105-138 (140)
435 PF11838 ERAP1_C: ERAP1-like C 49.1 2.5E+02 0.0053 26.9 17.0 112 393-504 145-261 (324)
436 COG0790 FOG: TPR repeat, SEL1 47.8 2.4E+02 0.0053 26.4 20.1 147 358-511 92-268 (292)
437 KOG0376 Serine-threonine phosp 47.6 19 0.00042 35.7 3.3 109 453-561 11-127 (476)
438 PF10516 SHNi-TPR: SHNi-TPR; 47.6 49 0.0011 20.0 3.8 28 481-508 2-29 (38)
439 PF00244 14-3-3: 14-3-3 protei 47.5 2.2E+02 0.0048 25.9 12.1 162 349-511 7-200 (236)
440 PF04190 DUF410: Protein of un 47.5 2.4E+02 0.0051 26.2 19.4 82 310-407 88-170 (260)
441 KOG4507 Uncharacterized conser 47.0 1.2E+02 0.0026 31.4 8.5 133 375-510 568-706 (886)
442 COG4941 Predicted RNA polymera 46.9 2.7E+02 0.0059 26.7 11.4 119 359-482 272-401 (415)
443 KOG0686 COP9 signalosome, subu 46.5 3E+02 0.0066 27.2 13.8 27 144-170 152-178 (466)
444 COG5159 RPN6 26S proteasome re 45.7 2.6E+02 0.0056 26.1 13.7 132 249-380 9-166 (421)
445 KOG1464 COP9 signalosome, subu 43.8 2.7E+02 0.0058 25.8 16.6 180 255-434 39-251 (440)
446 KOG3824 Huntingtin interacting 43.8 44 0.00096 31.1 4.7 60 426-485 128-189 (472)
447 PF10345 Cohesin_load: Cohesin 43.7 4.4E+02 0.0095 28.2 32.9 163 41-204 59-252 (608)
448 PF14669 Asp_Glu_race_2: Putat 43.4 2.2E+02 0.0049 24.8 13.0 93 135-237 100-206 (233)
449 PF02184 HAT: HAT (Half-A-TPR) 43.3 47 0.001 19.2 3.0 27 461-488 2-28 (32)
450 KOG4642 Chaperone-dependent E3 43.2 41 0.00088 30.3 4.2 55 454-508 18-72 (284)
451 PF11768 DUF3312: Protein of u 43.1 3.1E+02 0.0067 28.4 10.8 24 316-339 412-435 (545)
452 PF13934 ELYS: Nuclear pore co 42.5 2.6E+02 0.0056 25.3 11.0 96 371-474 72-168 (226)
453 PF11848 DUF3368: Domain of un 42.3 90 0.002 19.9 5.1 33 354-386 13-45 (48)
454 PF08424 NRDE-2: NRDE-2, neces 42.2 3.2E+02 0.007 26.3 16.0 114 360-476 48-184 (321)
455 PRK10564 maltose regulon perip 42.0 55 0.0012 30.7 5.1 40 345-384 259-298 (303)
456 KOG0292 Vesicle coat complex C 41.5 4.3E+02 0.0093 29.2 11.7 131 320-474 651-781 (1202)
457 COG4016 Uncharacterized protei 41.4 86 0.0019 25.0 5.2 40 469-508 57-96 (165)
458 TIGR02710 CRISPR-associated pr 40.9 3.7E+02 0.008 26.6 12.1 25 353-377 140-164 (380)
459 COG5108 RPO41 Mitochondrial DN 40.8 1.4E+02 0.003 31.4 8.0 23 383-405 33-55 (1117)
460 PF09670 Cas_Cas02710: CRISPR- 40.7 2.8E+02 0.0061 27.5 10.3 56 49-105 139-198 (379)
461 KOG0889 Histone acetyltransfer 40.7 9.9E+02 0.021 31.5 21.8 18 151-168 2491-2508(3550)
462 PRK11639 zinc uptake transcrip 40.6 1.2E+02 0.0025 26.0 6.7 44 44-87 28-71 (169)
463 COG5108 RPO41 Mitochondrial DN 40.4 1.6E+02 0.0034 31.0 8.3 73 81-153 33-114 (1117)
464 PRK10564 maltose regulon perip 40.2 55 0.0012 30.7 4.8 41 245-285 259-299 (303)
465 smart00777 Mad3_BUB1_I Mad3/BU 39.9 2E+02 0.0043 23.1 8.2 40 465-504 82-123 (125)
466 COG3947 Response regulator con 39.3 3.3E+02 0.0072 25.6 13.2 66 214-279 281-354 (361)
467 KOG0508 Ankyrin repeat protein 39.2 2E+02 0.0043 28.9 8.4 38 265-302 165-204 (615)
468 KOG4567 GTPase-activating prot 39.1 2.8E+02 0.0061 26.2 9.0 71 96-167 263-343 (370)
469 KOG2062 26S proteasome regulat 38.9 5.3E+02 0.012 27.8 23.2 119 352-474 510-634 (929)
470 COG0735 Fur Fe2+/Zn2+ uptake r 38.8 1.9E+02 0.0042 23.9 7.5 42 146-187 24-65 (145)
471 PF15297 CKAP2_C: Cytoskeleton 38.7 1.7E+02 0.0036 28.2 7.8 50 463-512 120-172 (353)
472 PF12796 Ank_2: Ankyrin repeat 38.4 1E+02 0.0022 22.5 5.5 15 21-35 5-19 (89)
473 KOG1308 Hsp70-interacting prot 38.0 34 0.00073 32.5 3.2 115 390-507 126-242 (377)
474 PRK11639 zinc uptake transcrip 37.6 1.8E+02 0.0039 24.8 7.4 47 145-191 28-74 (169)
475 COG0735 Fur Fe2+/Zn2+ uptake r 36.4 1.5E+02 0.0033 24.5 6.5 43 83-125 27-69 (145)
476 PF04910 Tcf25: Transcriptiona 36.4 4.3E+02 0.0093 26.0 19.2 52 386-440 111-165 (360)
477 PF15015 NYD-SP12_N: Spermatog 35.7 1.1E+02 0.0024 30.1 6.2 44 456-499 238-281 (569)
478 PF12069 DUF3549: Protein of u 35.2 4.2E+02 0.0092 25.6 12.9 135 318-454 172-306 (340)
479 PF14689 SPOB_a: Sensor_kinase 35.1 58 0.0013 22.2 3.3 26 246-271 26-51 (62)
480 PF11817 Foie-gras_1: Foie gra 35.0 1.4E+02 0.0031 27.4 6.8 17 388-404 188-204 (247)
481 PF07064 RIC1: RIC1; InterPro 35.0 3.7E+02 0.0081 24.9 15.2 154 44-206 85-249 (258)
482 PF14689 SPOB_a: Sensor_kinase 34.4 67 0.0015 21.9 3.5 27 345-371 25-51 (62)
483 cd08819 CARD_MDA5_2 Caspase ac 34.0 2E+02 0.0043 21.4 7.1 38 324-362 48-85 (88)
484 PF08311 Mad3_BUB1_I: Mad3/BUB 33.8 2.5E+02 0.0054 22.5 8.7 43 396-439 81-124 (126)
485 KOG1114 Tripeptidyl peptidase 33.7 7.2E+02 0.016 27.8 14.2 45 386-430 1239-1283(1304)
486 COG2909 MalT ATP-dependent tra 33.1 7.1E+02 0.015 27.6 27.1 56 383-439 623-684 (894)
487 PF11838 ERAP1_C: ERAP1-like C 32.2 4.5E+02 0.0098 25.0 14.6 79 92-170 146-229 (324)
488 PF11817 Foie-gras_1: Foie gra 31.8 1.3E+02 0.0027 27.7 6.0 55 417-471 181-243 (247)
489 KOG2063 Vacuolar assembly/sort 31.7 7.8E+02 0.017 27.6 17.3 27 245-271 506-532 (877)
490 PF10475 DUF2450: Protein of u 31.6 4.1E+02 0.0089 25.1 9.5 23 443-465 194-216 (291)
491 PF04090 RNA_pol_I_TF: RNA pol 31.6 2.2E+02 0.0048 25.0 6.9 92 447-538 42-134 (199)
492 PRK13800 putative oxidoreducta 30.9 8.3E+02 0.018 27.7 28.3 255 131-406 624-880 (897)
493 PF09986 DUF2225: Uncharacteri 30.9 3.9E+02 0.0085 23.9 9.8 24 419-442 170-193 (214)
494 COG4259 Uncharacterized protei 30.8 1.5E+02 0.0033 22.5 4.9 29 477-505 69-97 (121)
495 KOG1498 26S proteasome regulat 30.7 5.4E+02 0.012 25.4 17.4 107 210-339 50-158 (439)
496 PF15469 Sec5: Exocyst complex 30.2 3.6E+02 0.0078 23.2 11.5 25 383-407 91-115 (182)
497 PRK15490 Vi polysaccharide bio 29.8 3E+02 0.0065 28.9 8.6 46 424-470 52-98 (578)
498 KOG2758 Translation initiation 29.3 5.1E+02 0.011 24.8 9.4 62 448-509 131-196 (432)
499 TIGR02270 conserved hypothetic 29.2 6E+02 0.013 25.5 24.6 227 47-297 44-271 (410)
500 cd07153 Fur_like Ferric uptake 28.7 1.6E+02 0.0035 23.0 5.4 45 148-192 6-50 (116)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-98 Score=814.99 Aligned_cols=583 Identities=36% Similarity=0.618 Sum_probs=568.3
Q ss_pred CeeccCCCCcchHhHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHH
Q 048179 1 MIKTNLSAYGNSVGRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFT 80 (589)
Q Consensus 1 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (589)
|++.|+.||+.++|.||.+|+++|++++|.++|++|+.+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccH
Q 048179 81 VALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPRE 160 (589)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (589)
.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..||.++||++|.+|++.|++++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048179 161 AVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR 240 (589)
Q Consensus 161 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (589)
|+++|++|.+.|+.||..||++++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.+
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh-hcCCCChhHHHHHH
Q 048179 241 INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV-RRFDFNLVLGTSVI 319 (589)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~ 319 (589)
+|+++|+++|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|.++.+.++|..+. .++.++..++++|+
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 9999999999999999999999999999986 589999999999999999999999999999999 99999999999999
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRY 399 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~ 399 (589)
++|+++|++++|.++|+.+ .+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
+|+.|.+.+++.|+..+|++|+++|+++|++++|.+++++|+.+||..+|++|+.+|..+|+.+.|+.+.+++++++|++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 99999977799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 048179 480 LGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMRAISSW 559 (589)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 559 (589)
+..|..|+++|...|+|++|.++++.|+++|++|.||+|||++++++|.|.+||.+||+.++||..+++|..+|++.||.
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC----Ccc-cccccchhhhhhcccccc
Q 048179 560 LQGHM----EEH-EEHDPLSTAAQYAPTYYL 585 (589)
Q Consensus 560 ~~~~~----~~~-~~~~~~~~~~~~~~~~~~ 585 (589)
|++.. +++ .+..+..|.++||.+|||
T Consensus 771 ~~~~~~~~~~~~~k~~~~~~hse~la~a~~l 801 (857)
T PLN03077 771 GSESSSMDEIEVSKDDIFCGHSERLAIAFGL 801 (857)
T ss_pred CCcchhccccHHHHHHHHHhccHHHHHHHhh
Confidence 98542 222 233588999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.6e-90 Score=731.93 Aligned_cols=547 Identities=29% Similarity=0.512 Sum_probs=532.3
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHH
Q 048179 39 RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKED-VRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSM 117 (589)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 117 (589)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456799999999999999999999999999864 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHH
Q 048179 118 LNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGL 197 (589)
Q Consensus 118 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 197 (589)
+.+|+++|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 048179 198 SVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD 277 (589)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 277 (589)
+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 048179 278 SVSLVSALLACAQIGFLKLGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIH 356 (589)
Q Consensus 278 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 356 (589)
..||+.++.+|++.|.++.|.++|..+. .+++++..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 048179 357 GHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKI 436 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 436 (589)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++|+++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 048179 437 VDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPG 516 (589)
Q Consensus 437 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 516 (589)
+++|+.+|+..+|++|+.+|..+|+++.|+.+++++++++|++...|..|+++|.+.|+|++|.++++.|++.|++|.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcccCCCC-----ccccc-ccchhhhhhcccccc
Q 048179 517 YSVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMRAISSWLQGHME-----EHEEH-DPLSTAAQYAPTYYL 585 (589)
Q Consensus 517 ~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~ 585 (589)
+||+++++++|.|.+||.+||+.++||..+.++..+|++.||.|++... ++.++ .+..|.+++|.+|||
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999996532 22233 478999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-77 Score=645.67 Aligned_cols=508 Identities=29% Similarity=0.476 Sum_probs=471.7
Q ss_pred eeccCCCCcchHhHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHH
Q 048179 2 IKTNLSAYGNSVGRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTV 81 (589)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (589)
++.|..+++.++|+|+.+|+++|+++.|.++|++|++||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHH
Q 048179 82 ALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREA 161 (589)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 161 (589)
++++|+..++++.+.+++..+.+.|+.||..++++|+.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 048179 162 VDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRI 241 (589)
Q Consensus 162 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (589)
+++|.+|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh-hcCCCChhHHHHHHH
Q 048179 242 NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV-RRFDFNLVLGTSVID 320 (589)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~ 320 (589)
|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+. .|..++..++++|++
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 048179 321 MYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYW 400 (589)
Q Consensus 321 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 400 (589)
+|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 999999999999999999999999999999999999999999999999986 5999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhcc--CCC
Q 048179 401 FDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKL--NPD 478 (589)
Q Consensus 401 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~ 478 (589)
+..+.+. |+.++..++++|+++|+++|++++|.++|+++ +||..+|++++.+|.++|+.++|.++|++|.+. .|
T Consensus 512 ~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P- 587 (857)
T PLN03077 512 HAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP- 587 (857)
T ss_pred HHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Confidence 9999886 88888877778888887777777777777777 567777777777777777777777777777653 34
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHH-hCCCccC
Q 048179 479 DLGIHALVSNFFAMEQKWEEVAGVRKTMR-KSGMKKV 514 (589)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~ 514 (589)
|..+|..+..+|.+.|++++|.++|+.|. +.|+.++
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 45556666667777777777777777776 4555543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-67 Score=559.87 Aligned_cols=503 Identities=17% Similarity=0.205 Sum_probs=465.2
Q ss_pred CCCcchHhHHHHhhhcCCChHHHHHHhccCCCCCccc-----HHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHH
Q 048179 7 SAYGNSVGRIIALYGGKNDIVSARKLFEELPLRGVDT-----YNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTV 81 (589)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (589)
.++...|..++..+++.|++++|.++|++|+.++... ++.++..|.+.|..++|+++|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4577889999999999999999999999999877654 45667779999999999999999974 89999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcC----CCCcchHHHHHHHHHhCCC
Q 048179 82 ALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQ----RKDLVCWSSMINGLVFNGQ 157 (589)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 157 (589)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred ccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 048179 158 PREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIR--RHLNLDVKVQTSLVDMYAKTGHLDLASHVF 235 (589)
Q Consensus 158 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 235 (589)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|++|.. .|+.||..+|++++.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 678999999999999999999999999999
Q ss_pred hhcCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh-hcCCC
Q 048179 236 KNMSR----INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV-RRFDF 310 (589)
Q Consensus 236 ~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~ 310 (589)
+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+. .+..|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99976 56799999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQ----SRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLS 386 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 386 (589)
+..+|++|+.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 58999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----HcC-------------------CHHHHHHHHHhcC--
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLA----RAG-------------------EVEEALKIVDSMS-- 441 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~-- 441 (589)
+|++.|++++|.++|+.|.+. |+.||..+|++++.++. +++ ..++|..+|++|.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999987 99999999999997643 222 2367999999994
Q ss_pred -CCCChhHHHHHHHHHHhcCCchHHHHHHHHHhc-cCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 048179 442 -TEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLK-LNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPG 516 (589)
Q Consensus 442 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 516 (589)
..||..+|+.++.++...+..+.+..+++.+.. -.+.+...|..+.+.+.+. .++|..++++|.+.|+.+...
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 469999999999877788888888888877653 3456778899998877332 368999999999999987554
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-64 Score=532.78 Aligned_cols=472 Identities=15% Similarity=0.202 Sum_probs=445.7
Q ss_pred eeccC-CCCcchHhHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHH
Q 048179 2 IKTNL-SAYGNSVGRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFT 80 (589)
Q Consensus 2 ~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (589)
.+.|+ .++..+++.++..|.+.|.+++|..+|+.|+.||..+||.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+
T Consensus 397 ~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 397 EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45564 57888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcC----CCCcchHHHHHHHHHhCC
Q 048179 81 VALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQ----RKDLVCWSSMINGLVFNG 156 (589)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 156 (589)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+||.||.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999996 489999999999999999
Q ss_pred CccHHHHHHHHHHH--CCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048179 157 QPREAVDAYKRMKK--EGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHV 234 (589)
Q Consensus 157 ~~~~A~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 234 (589)
++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999986 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh-hcCC
Q 048179 235 FKNMSR----INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV-RRFD 309 (589)
Q Consensus 235 ~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~ 309 (589)
|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|+.+. .+..
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999975 78899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQS----RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLL 385 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 385 (589)
|+..+|++||.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|+.++|.++|.+|.+.|+.||..+|+.++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999963 899999999999999999999999999999999999999999998
Q ss_pred HHHhc----C-------------------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 048179 386 SALSH----S-------------------GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST 442 (589)
Q Consensus 386 ~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (589)
..|.+ . +..+.|..+|++|.+. |+.||..+|+.++.++.+.+..+.+..+++.|..
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 76542 1 2246799999999998 9999999999999999999999999999999854
Q ss_pred ---CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 443 ---EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 443 ---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
.|+..+|++|+.+|... .++|..++++|.+.+
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 47789999999998432 368999999999754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-63 Score=525.24 Aligned_cols=408 Identities=24% Similarity=0.429 Sum_probs=395.3
Q ss_pred CeeccCCCCcchHhHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHH
Q 048179 1 MIKTNLSAYGNSVGRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFT 80 (589)
Q Consensus 1 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (589)
|++.|+.||+.++|.|+.+|+++|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccH
Q 048179 81 VALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPRE 160 (589)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (589)
.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048179 161 AVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR 240 (589)
Q Consensus 161 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (589)
|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh--hcCCCChhHHHHH
Q 048179 241 INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV--RRFDFNLVLGTSV 318 (589)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~l 318 (589)
+|+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.+. .++.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 5899999999999
Q ss_pred HHHhHhcCCHHHHHHHHHhcC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQ-SRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEE 396 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~ 396 (589)
+++|++.|++++|.++|+++. .|+..+|++++.+|..+|+.+.|..+++++.+. .|+ ..+|..++..|++.|++++
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHH
Confidence 999999999999999999997 589999999999999999999999999998754 454 6699999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 048179 397 GRYWFDLMVSKYKIQ 411 (589)
Q Consensus 397 a~~~~~~~~~~~~~~ 411 (589)
|.++++.|.+. |+.
T Consensus 547 A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 547 AAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHHHHHHHc-CCc
Confidence 99999999987 765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-31 Score=299.11 Aligned_cols=494 Identities=11% Similarity=0.081 Sum_probs=367.8
Q ss_pred CCcchHhHHHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHH
Q 048179 8 AYGNSVGRIIALYGGKNDIVSARKLFEELPL---RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALK 84 (589)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 84 (589)
.++..+..+...|.+.|++++|..+|+++.. .+...|..+...+...|++++|++.|+.+.+.+.. +......++.
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHH
Confidence 3566788888899999999999999987652 34557778888888889999999999888776432 3344556667
Q ss_pred HHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHH
Q 048179 85 ACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREA 161 (589)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 161 (589)
.+.+.|+++.|..+++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...+..+...+...|++++|
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 7778888888888888877653 45667788888888888888888888887653 2455677777788888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 048179 162 VDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR- 240 (589)
Q Consensus 162 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 240 (589)
.+.|+++.+.+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.+
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88888887653 3356677777777778888888888888877665 33556677778888888888888888877754
Q ss_pred --CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHH
Q 048179 241 --INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSV 318 (589)
Q Consensus 241 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 318 (589)
.+...|..+..++...|++++|+..|+++.+.. +.+...+..+...+...|+.+.|..++..+....+.+...+..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345677778888888888888888888877653 34455667777777778888888888887776666677777788
Q ss_pred HHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVE 395 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~ 395 (589)
+..+...|++++|.++++.+.+ .+...+..+...+...|++++|++.|+++...+ |+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 8888888888888888877754 345567777777778888888888888777653 44456666777777778888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 396 EGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 396 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
+|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++.. +++..++..+...+...|+ ++|+..+++++
T Consensus 754 ~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 88887777776 3345566777777777778888888887777632 2456667777777777777 66777777777
Q ss_pred ccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 474 KLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 474 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
++.|+++..+..++.+|...|++++|.+.++++.+.+.
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777777777777777777777776554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-31 Score=296.65 Aligned_cols=492 Identities=11% Similarity=0.014 Sum_probs=414.5
Q ss_pred CcchHhHHHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHH
Q 048179 9 YGNSVGRIIALYGGKNDIVSARKLFEELPL---RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKA 85 (589)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 85 (589)
++..+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456777888889999999999999987653 346678889999999999999999999988764 2355667777788
Q ss_pred HhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHH
Q 048179 86 CVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAV 162 (589)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 162 (589)
+...|+++.|.+.++.+.+.... .......++..+.+.|++++|..+++.+.. .+..+|+.+...+...|++++|.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 88999999999999998887532 345566788889999999999999998874 35678999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 048179 163 DAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR-- 240 (589)
Q Consensus 163 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 240 (589)
+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|+.++|...|+++..
T Consensus 486 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 486 EAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999988753 2345567778888889999999999999998775 34678888899999999999999999998854
Q ss_pred -CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHH
Q 048179 241 -INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVI 319 (589)
Q Consensus 241 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 319 (589)
.+...+..++..|...|++++|+.+++++.... +.+..++..+..++...|+++.|...+..+....+.+...+..+.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 345677788899999999999999999998753 556778888999999999999999999998866677788889999
Q ss_pred HHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEE 396 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~ 396 (589)
..|.+.|++++|...|+++.+ .+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998764 356788999999999999999999999998875 5567778888888999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 397 GRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 397 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
|...|+.+... .|+...+..++.++.+.|++++|.+.++++.. +.+..++..+...|...|++++|.+.++++++
T Consensus 722 A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999998854 46667788899999999999999999988732 34677888888889999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 475 LNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
..|+++..+..++.++...|+ .+|+..++++.+..
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 999999999999999999999 88999999887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.6e-23 Score=234.01 Aligned_cols=491 Identities=11% Similarity=0.048 Sum_probs=244.1
Q ss_pred CcchHhHHHHhhhcCCChHHHHHHhccCCC--CCc-ccH----------------HHHHHHHHcCCCchhHHHHHHHHHH
Q 048179 9 YGNSVGRIIALYGGKNDIVSARKLFEELPL--RGV-DTY----------------NSIIIAYSRKESPFEVLGLYNQMIK 69 (589)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~----------------~~li~~~~~~g~~~~a~~~~~~m~~ 69 (589)
|+.++..++..+.+.|+.++|.+.+++..+ |+. ..+ ..+.+.+...|++++|++.|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 556667777777777788777777776642 221 111 2233456677778888887777765
Q ss_pred CCCCCCccc-HHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCc------
Q 048179 70 EDVRPDSST-FTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDL------ 142 (589)
Q Consensus 70 ~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------ 142 (589)
.+ +|+... ...........++.++|.+.++++.+.. +.+...+..+..++...|+.++|+..|+++.....
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 53 223211 1111112224477777777777777764 33556667777777777777777777777643110
Q ss_pred ch-----------------HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHH
Q 048179 143 VC-----------------WSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIR 205 (589)
Q Consensus 143 ~~-----------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 205 (589)
.. +...+..+-.......|...+.++......|+... ......+...|++++|...++.+++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 00000000011111222222222222111111110 1122344556666666666666665
Q ss_pred hcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCe---ehHHH------------HHHHHHhCCChhHHHHHHHH
Q 048179 206 RHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR--INI---VTWGA------------LISGFAQNGLAGSTLELLME 268 (589)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~g~~~~a~~~~~~ 268 (589)
.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|.. ....+.+.|++++|+..|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 53 22455666666666666666666666666543 211 11211 12344566666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHh--------------------------
Q 048179 269 MQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMY-------------------------- 322 (589)
Q Consensus 269 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------- 322 (589)
..+.. +.+...+..+...+...|+.+.|...++.+....+.+...+..+...|
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 66542 223344555556666666666666666666644444444444444443
Q ss_pred ----------------HhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048179 323 ----------------SKCGVPSCARALFDQMQS--R-DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFAS 383 (589)
Q Consensus 323 ----------------~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 383 (589)
...|++++|.+.|++..+ | +...+..+...|.+.|++++|...++++.+.. +.+...+..
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a 534 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYA 534 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 444555555555554432 2 22334444455555555555555555554432 112222222
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh---------hhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHH
Q 048179 384 LLSALSHSGLVEEGRYWFDLMVSKYKIQPTE---------KHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLS 454 (589)
Q Consensus 384 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 454 (589)
+...+...++.++|...++.+... ...++. ..+..+...+...|+.++|.++++.- +++...+..+..
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~ 611 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHH
Confidence 223334445555555555443211 000000 00111223344444444444444421 122334444555
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 455 GCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 455 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 555566666666666666666666666666666666666666666665555443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.6e-22 Score=226.04 Aligned_cols=486 Identities=11% Similarity=0.044 Sum_probs=365.9
Q ss_pred CcchHhHHHHhhhcCCChHHHHHHhccCCCCCc------ccH-----------------HHHHHHHHcCCCchhHHHHHH
Q 048179 9 YGNSVGRIIALYGGKNDIVSARKLFEELPLRGV------DTY-----------------NSIIIAYSRKESPFEVLGLYN 65 (589)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~a~~~~~ 65 (589)
++.....+..++.+.|+.++|...|+++..... ..| ...+..+-.......|...+.
T Consensus 180 ~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 180 NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 455677778888888888888888887643211 011 111111112222334455555
Q ss_pred HHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC--CCc-
Q 048179 66 QMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR--KDL- 142 (589)
Q Consensus 66 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~- 142 (589)
.+......|+... ......+...|++++|...|+++++.. +.+...+..|..+|.+.|++++|+..|++..+ |+.
T Consensus 260 ~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 260 EQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 4443322222211 123445667899999999999999874 34778889999999999999999999998875 322
Q ss_pred --chHHHH------------HHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 048179 143 --VCWSSM------------INGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHL 208 (589)
Q Consensus 143 --~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 208 (589)
..|..+ ...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++.+++...
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 123222 345678999999999999998863 23456677788899999999999999999998753
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------------eehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 048179 209 NLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRIN------------IVTWGALISGFAQNGLAGSTLELLMEMQSCGFEP 276 (589)
Q Consensus 209 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 276 (589)
.+...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++.++. .|
T Consensus 417 -~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P 492 (1157)
T PRK11447 417 -GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DP 492 (1157)
T ss_pred -CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 34566777777774 467899999998775421 224555677888999999999999999886 45
Q ss_pred -CHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC----Chh-------
Q 048179 277 -DSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSR----DLI------- 344 (589)
Q Consensus 277 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~------- 344 (589)
+...+..+...+...|+.+.|...++.+....+.++..+..+...+...++.++|...++.+... +..
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 45566778888999999999999999998666677777777777788899999999999988642 111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 345 --SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 345 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
.+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++.
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~ 645 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIE 645 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 123456678899999999999872 2455667778888999999999999999999873 3445888999999
Q ss_pred HHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc------hhHHHHHHHHHhCC
Q 048179 423 LLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL------GIHALVSNFFAMEQ 494 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g 494 (589)
+|...|++++|++.++.... .| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 99999999999999998753 34 455677788889999999999999999998876554 36667799999999
Q ss_pred ChHHHHHHHHHHHh
Q 048179 495 KWEEVAGVRKTMRK 508 (589)
Q Consensus 495 ~~~~a~~~~~~m~~ 508 (589)
++++|.+.+++...
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998864
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2e-23 Score=198.02 Aligned_cols=445 Identities=13% Similarity=0.114 Sum_probs=366.3
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVK 123 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 123 (589)
...|..-..+.|++.+|.+--...-..+ +.+......+-..+.+..+++...+.-....+.. +.-..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 5556666778899999998766554443 2234444444455556666666555544444442 3356789999999999
Q ss_pred CCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHH-HHHHHccCCcHHHHHH
Q 048179 124 CGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGL-IQACADLGDSRFGLSV 199 (589)
Q Consensus 124 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~~~~~~a~~~ 199 (589)
.|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+- .......|++++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999876 35779999999999999999999999998874 5665544433 3334457899999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 048179 200 HGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINI---VTWGALISGFAQNGLAGSTLELLMEMQSCGFEP 276 (589)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 276 (589)
+.+++.... .=..+|+.|...+-..|+...|+..|++..+.|+ ..|-.|...|...+.+++|+..|.+.... .|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 988887642 2356789999999999999999999999987544 57888999999999999999999988875 55
Q ss_pred C-HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 048179 277 D-SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIAS 352 (589)
Q Consensus 277 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 352 (589)
+ ...+..+...|-..|.++.|+..++......|.-+..|+.|..++-..|++.+|...|.+... ....+.+.+...
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 5 466777777888999999999999999977788889999999999999999999999998875 345688999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCH
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEV 430 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 430 (589)
|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++.. .+.|+ .+.|+.+...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999877 4555 4578999999999999999999999998 67888 78999999999999999
Q ss_pred HHHHHHHHhc-CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHH
Q 048179 431 EEALKIVDSM-STEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVA 500 (589)
Q Consensus 431 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 500 (589)
+.|.+.+.+. ...|. ...++.|...|...|+..+|++.++.++++.||.+.+|..++..+.-..+|.+--
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 9999999886 44665 5578999999999999999999999999999999999999998877777777633
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-21 Score=184.84 Aligned_cols=419 Identities=12% Similarity=0.118 Sum_probs=343.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCC
Q 048179 81 VALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQ 157 (589)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 157 (589)
.+..-.-+.|++++|++-...+-..+ +.+....-.+-..+....+++....--....+ .-..+|+.+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444557788888887666554432 22222222333455666666654433222222 245689999999999999
Q ss_pred ccHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhcCCHHHHHHHH
Q 048179 158 PREAVDAYKRMKKEGIDA-DEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDV-KVQTSLVDMYAKTGHLDLASHVF 235 (589)
Q Consensus 158 ~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 235 (589)
+++|+.+|+.+++. +| ....|..+..++...|+.+.|.+.+...++.. |+. .+.+.+.......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999986 44 56788889999999999999999999988764 443 34455666777789999999998
Q ss_pred hhcCC--CC-eehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCC
Q 048179 236 KNMSR--IN-IVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD-SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFN 311 (589)
Q Consensus 236 ~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 311 (589)
.+..+ |. .+.|+.|...+..+|+...|+..|++.... .|+ ...|..+...+...+.++.|...+..+..--+..
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 88765 43 478999999999999999999999999875 555 4578888888999999999999998888777777
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQS--RD-LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSA 387 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a 387 (589)
..++..+...|...|.++.|+..|++..+ |+ ...|+.|..++-..|++.+|...+.+.... .|+ ....+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 88888899999999999999999999876 33 479999999999999999999999998875 454 5688899999
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCC-hhHHHHHHHHHHhcCCchH
Q 048179 388 LSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSM-STEPG-LAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 464 (589)
+...|.+++|..+|....+ +.|. ....+.|...|..+|++++|+.-+++. ..+|+ ..+++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999999885 4466 677899999999999999999999986 56786 4589999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 465 GEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 465 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
|.+.+.+++.++|.-+.++..|+.+|...|+..+|+.-+++..+..+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999887543
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.5e-19 Score=193.18 Aligned_cols=469 Identities=12% Similarity=0.056 Sum_probs=302.3
Q ss_pred hcCCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHH
Q 048179 21 GGKNDIVSARKLFEELP---LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEE 97 (589)
Q Consensus 21 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 97 (589)
...|++++|...|+... +.+..++..+.+.|...|++++|+..+++..+. .|+...|..++..+ ++.+.|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 34599999999999875 334667899999999999999999999999886 45555555555333 88889999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHH--------HHhCCChHHHHHHHHhcCCCC--cchHHHH-HHHHHhCCCccHHHHHHH
Q 048179 98 IWRKAVELGYGNDVFVGSSMLNL--------YVKCGKMNEAMVAFEKMQRKD--LVCWSSM-INGLVFNGQPREAVDAYK 166 (589)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~A~~~~~ 166 (589)
+++++.+.. +-+..++..+... |.+.+...++++ .+...++ ..+.... ...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999885 3355666666665 777766666666 3333343 3334444 889999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHc-cCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----
Q 048179 167 RMKKEGIDADEVVMMGLIQACAD-LGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR----- 240 (589)
Q Consensus 167 ~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 240 (589)
++.+.+.. +..-...+..++.. .++ +.+..++.. .+..++.++..+++.|.+.|+.++|.++++++..
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 99998533 34445556667776 466 666666442 3346888899999999999999999999887642
Q ss_pred CCeehH------------------------------HHHHHHH-------------------------------------
Q 048179 241 INIVTW------------------------------GALISGF------------------------------------- 253 (589)
Q Consensus 241 ~~~~~~------------------------------~~li~~~------------------------------------- 253 (589)
+...+| -.++..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 110000 0001111
Q ss_pred --------------------------HhCCChhHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhccCch---hhH-----
Q 048179 254 --------------------------AQNGLAGSTLELLMEMQSC-G-FEPDSVSLVSALLACAQIGFL---KLG----- 297 (589)
Q Consensus 254 --------------------------~~~g~~~~a~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~---~~a----- 297 (589)
.+.|+.++|..+|+..... + ..++......++..+...+.+ ..+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 2344455555555554431 1 122222233455555444331 111
Q ss_pred -----------------HHHHHHHh---hcCCC--ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHH--HHHH
Q 048179 298 -----------------KSIHGYTV---RRFDF--NLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVI--IASY 353 (589)
Q Consensus 298 -----------------~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~ 353 (589)
........ ...++ +...+..+..++.. ++.++|...|.+.....+..++.+ ...+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al 519 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQA 519 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 11122222 12233 56666667766665 677777776666543222233333 3334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEA 433 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 433 (589)
...|++++|...|+++... +|+...+..+..++.+.|+.++|..+++...+. -+++...+..+...+.+.|++++|
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHH
Confidence 5778888888888776543 344444556666677778888888888777653 122233333333444455888888
Q ss_pred HHHHHhcC-CCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 434 LKIVDSMS-TEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 434 ~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
...+++.. ..|+...|..+..++.+.|++++|+..++++++++|+++..+..++.++...|++++|+..+++..+
T Consensus 596 l~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 596 LNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 87777753 3567777777777778888888888888888888888888888888888888888888887777765
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.7e-18 Score=185.30 Aligned_cols=490 Identities=11% Similarity=0.027 Sum_probs=319.2
Q ss_pred CcchHhHHHHhhhcCCChHHHHHHhccCCCCCc--ccHHHHHHHHHcCCCchhHHHHHHHHHHCCC--------------
Q 048179 9 YGNSVGRIIALYGGKNDIVSARKLFEELPLRGV--DTYNSIIIAYSRKESPFEVLGLYNQMIKEDV-------------- 72 (589)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------- 72 (589)
++.++..|..+|.+.|+.++|+..+++....+. ..|..++..+ +++.+|..+|+++.+...
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~ 153 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEV 153 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhh
Confidence 356777888888888888888888887653322 2222222222 666677777766655421
Q ss_pred ------------------------CCCcccHHHH-HHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh-CCC
Q 048179 73 ------------------------RPDSSTFTVA-LKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVK-CGK 126 (589)
Q Consensus 73 ------------------------~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~ 126 (589)
.|+..+.... .+.|.+.++++++..++..+.+.+. .+......|..+|.. .++
T Consensus 154 ~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~ 232 (987)
T PRK09782 154 GQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD 232 (987)
T ss_pred ccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH
Confidence 1122222222 5556666777777777777777652 344445556666666 355
Q ss_pred hHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCC-CChhhHHHH----------------------
Q 048179 127 MNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGID-ADEVVMMGL---------------------- 183 (589)
Q Consensus 127 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~l---------------------- 183 (589)
+.+..+++...+.|...+..++..|.+.|+.++|.++++++...-.. |...++..+
T Consensus 233 -~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 233 -DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred -HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 66666666544457777888889999999999999988887643222 333222222
Q ss_pred --------HHHHHccCCcHHHHHHHH-----------------------------HHHHhcCCCchHHHHHHHHHHHhcC
Q 048179 184 --------IQACADLGDSRFGLSVHG-----------------------------YSIRRHLNLDVKVQTSLVDMYAKTG 226 (589)
Q Consensus 184 --------l~~~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~g 226 (589)
+..+.+.++++.++++.. .+.+.. +.+....--+.-...+.|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 223334444443333321 111110 112222223333445678
Q ss_pred CHHHHHHHHhhcCC--CCe----ehHHHHHHHHHhCCC---hhHHHHH----------------------HHHHHhc-CC
Q 048179 227 HLDLASHVFKNMSR--INI----VTWGALISGFAQNGL---AGSTLEL----------------------LMEMQSC-GF 274 (589)
Q Consensus 227 ~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m~~~-g~ 274 (589)
+.++|.++|+.... ++. ..-+-++..|.+.+. ..+++.+ +...... +.
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 88888888887755 111 233356666766655 3333222 1111111 11
Q ss_pred -CC--CHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CChhHHHHH
Q 048179 275 -EP--DSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--RDLISWNVI 349 (589)
Q Consensus 275 -~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l 349 (589)
++ +...+..+..++.. +..+.|...+.......+ +......+...+...|++++|...|+++.. ++...+..+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P-d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~l 548 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP-DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAA 548 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHH
Confidence 22 44555555555555 778788887777763333 333344455555789999999999987764 445567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 350 IASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
...+.+.|+.++|...+++.++.. +++...+..+...+...|++++|...+++..+ +.|+...+..+..++.+.|+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCC
Confidence 788889999999999999988764 22333344444555667999999999999884 45778888999999999999
Q ss_pred HHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 430 VEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 430 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
+++|+..+++.. ..| +...+..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999873 345 456777888889999999999999999999999999999999999999999999999999987
Q ss_pred hCC
Q 048179 508 KSG 510 (589)
Q Consensus 508 ~~g 510 (589)
+..
T Consensus 705 ~l~ 707 (987)
T PRK09782 705 DDI 707 (987)
T ss_pred hcC
Confidence 644
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.1e-19 Score=188.86 Aligned_cols=417 Identities=11% Similarity=-0.024 Sum_probs=279.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCC---CcchHHHHHHHHHhCCC
Q 048179 81 VALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRK---DLVCWSSMINGLVFNGQ 157 (589)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 157 (589)
.....+.+.|+++.|...|+++++. .|+...|..+..+|.+.|++++|++.++...+. +...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3444556667777777777777664 355666777777777777777777777766542 34466667777777777
Q ss_pred ccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048179 158 PREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 158 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
+++|+..|......+.. +......++..... ..+........+.. +.+...+..+.. |........+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 77777776655433211 11111111111111 11112222222221 111122222222 2211111111111221
Q ss_pred cCCCCe---ehHHHHHHH---HHhCCChhHHHHHHHHHHhcC-CCCC-HHHHHHHHHHHhccCchhhHHHHHHHHhhcCC
Q 048179 238 MSRINI---VTWGALISG---FAQNGLAGSTLELLMEMQSCG-FEPD-SVSLVSALLACAQIGFLKLGKSIHGYTVRRFD 309 (589)
Q Consensus 238 ~~~~~~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 309 (589)
..+.+. ..+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|+++.|...++.+....+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 111111 111111111 123467899999999988764 2343 34566667777889999999999999886667
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLS 386 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 386 (589)
.....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++.++.. +.+...+..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 7777888899999999999999999998764 356788899999999999999999999998864 334667778888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCCh-hH-------HHHHHHHHH
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPGL-AV-------WVALLSGCH 457 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~-------~~~l~~~~~ 457 (589)
++.+.|++++|+..|+...+. .+.+...+..+..++...|++++|++.|++.. ..|+. .. ++..+..+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 899999999999999999863 34457888999999999999999999999853 33321 11 122222334
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
..|++++|++.++++++++|++..++..++.+|.+.|++++|.+.+++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999998763
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=8e-20 Score=182.51 Aligned_cols=289 Identities=14% Similarity=0.111 Sum_probs=194.9
Q ss_pred hcCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhccCchhhH
Q 048179 224 KTGHLDLASHVFKNMSRI---NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD---SVSLVSALLACAQIGFLKLG 297 (589)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a 297 (589)
..|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444331 122344444444444444444444444443221111 12233444444444555555
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048179 298 KSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRD--------LISWNVIIASYGIHGHGEEALSLFLQM 369 (589)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m 369 (589)
..++..+....+.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+...|++++|...|+++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 554444443333445556677777777788888887777765421 123556777788899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCCh
Q 048179 370 IETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT--EKHYACMVDLLARAGEVEEALKIVDSMS-TEPGL 446 (589)
Q Consensus 370 ~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 446 (589)
.+.. +.+...+..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++. ..|+.
T Consensus 207 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 207 LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 8764 334557778888899999999999999999864 233 4567889999999999999999999974 35777
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh--CCChHHHHHHHHHHHhCCCccCCc
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM--EQKWEEVAGVRKTMRKSGMKKVPG 516 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~ 516 (589)
..+..++..+...|++++|...++++++..|+++.....+...+.. .|+.+++..++++|.+++++++|.
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7778888899999999999999999999999876544334333322 569999999999999999988887
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.2e-17 Score=176.81 Aligned_cols=395 Identities=10% Similarity=0.020 Sum_probs=217.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCC
Q 048179 80 TVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNG 156 (589)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 156 (589)
.-.+......|+.++|.+++..+.... +.+...+..+..++.+.|++++|..+|++..+ .+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 333444445555555555555554421 23333455555555555555555555555332 23344455555555666
Q ss_pred CccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 048179 157 QPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFK 236 (589)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (589)
++++|+..+++..+.. +.+.. +..+..++...|+.+.|...++.+.+..+. +..++..+...+...|..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 6666666666655541 11222 444555555566666666666666555422 34444556666666677777777666
Q ss_pred hcCCCCee--------hHHHHHHHHH-----hCCCh---hHHHHHHHHHHhc-CCCCCHH-HHHHHHHHHhccCchhhHH
Q 048179 237 NMSRINIV--------TWGALISGFA-----QNGLA---GSTLELLMEMQSC-GFEPDSV-SLVSALLACAQIGFLKLGK 298 (589)
Q Consensus 237 ~~~~~~~~--------~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~~ll~~~~~~~~~~~a~ 298 (589)
.... ++. ....++.... ..+++ ++|+..++.+.+. ...|+.. .+..
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~--------------- 238 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR--------------- 238 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH---------------
Confidence 6554 111 1111111111 11122 5566666666543 1122211 1100
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCC---hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048179 299 SIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRD---LI-SWNVIIASYGIHGHGEEALSLFLQMIETMV 374 (589)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 374 (589)
.....+.++...|++++|+..|+.+.+.+ +. .-..+...|...|++++|+..|+++.+...
T Consensus 239 ---------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 239 ---------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred ---------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 00011122334566777777777665421 11 111235566777777777777777665321
Q ss_pred CC---CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC----------CCCC---hhhHHHHHHHHHHcCCHHHHHHHHH
Q 048179 375 KP---DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYK----------IQPT---EKHYACMVDLLARAGEVEEALKIVD 438 (589)
Q Consensus 375 ~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (589)
.. .......+..++...|++++|...++.+.+... -.|+ ...+..+...+...|++++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 122344455566777777777777777665310 0122 1234456677777888888888887
Q ss_pred hcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 439 SMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 439 ~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
++.. .| +...+..+...+...|++++|++.++++++++|+++..+..++.++...|+|++|..+++.+.+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7632 33 45567777777788888888888888888888888888888888888888888888888777653
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4e-19 Score=177.46 Aligned_cols=299 Identities=15% Similarity=0.103 Sum_probs=161.8
Q ss_pred HHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHHhC
Q 048179 48 IIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGND---VFVGSSMLNLYVKC 124 (589)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 124 (589)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777777777777653 22444666666677777777777777777666432111 23455666666666
Q ss_pred CChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHH
Q 048179 125 GKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHG 201 (589)
Q Consensus 125 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 201 (589)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 777777777766654 2445666666666666666666666666665432221100
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 048179 202 YSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR--I-NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDS 278 (589)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 278 (589)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.+.|+++...+.....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 011223344445555555555555555433 1 2234445555555666666666666665543211112
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHh-
Q 048179 279 VSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--RDLISWNVIIASYGI- 355 (589)
Q Consensus 279 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~- 355 (589)
.++..+..++...|+.+.|...+..+.... |+...+..++..+.+.|++++|..+|+++.+ |+..+++.++..+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEY-PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 233333344444444444444433333111 1222335556666666666666666665543 555566665555443
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHH
Q 048179 356 --HGHGEEALSLFLQMIETMVKPDHS 379 (589)
Q Consensus 356 --~g~~~~A~~~~~~m~~~~~~p~~~ 379 (589)
.|+.++++.++++|.+.++.|++.
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC
Confidence 346666667777666665555554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.7e-17 Score=174.45 Aligned_cols=421 Identities=11% Similarity=-0.000 Sum_probs=295.9
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVK 123 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 123 (589)
+......+.+.|++++|++.|++..+. .|+...|..+..++.+.|+++.|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667788999999999999998875 5788889999999999999999999999999875 3356788889999999
Q ss_pred CCChHHHHHHHHhcCCCCc---chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHH
Q 048179 124 CGKMNEAMVAFEKMQRKDL---VCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVH 200 (589)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 200 (589)
.|++++|+.-|......+. .....++..+.. ..+........+.. .++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 9999999988866543211 111111111111 12222233332221 112222222211 21111111111111
Q ss_pred HHHHHhcCCCch-HHHHHHHHH---HHhcCCHHHHHHHHhhcCCC------CeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 048179 201 GYSIRRHLNLDV-KVQTSLVDM---YAKTGHLDLASHVFKNMSRI------NIVTWGALISGFAQNGLAGSTLELLMEMQ 270 (589)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 270 (589)
....+ ..++. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 01110 011111111 12346788999999887642 33567788888889999999999999988
Q ss_pred hcCCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-ChhHH
Q 048179 271 SCGFEPD-SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-DLISW 346 (589)
Q Consensus 271 ~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 346 (589)
+. .|+ ...+..+...+...|+++.|...++.+....+.+..++..+...|...|++++|...|++..+ | +...|
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 75 454 557778888888999999999999998866777888999999999999999999999998865 3 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-h-------hHH
Q 048179 347 NVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTE-K-------HYA 418 (589)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~ 418 (589)
..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...|+...+. .|+. . .++
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHH
Confidence 888889999999999999999988753 344678888999999999999999999998853 2321 1 122
Q ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCch
Q 048179 419 CMVDLLARAGEVEEALKIVDSM-STEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLG 481 (589)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 481 (589)
.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|+..+++++++.+....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 2223344579999999999986 44454 457888999999999999999999999998875443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.3e-17 Score=174.80 Aligned_cols=330 Identities=9% Similarity=-0.010 Sum_probs=238.9
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 048179 144 CWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYA 223 (589)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (589)
....++..+.+.|++++|+.+++........+ ...+..++.+....|+++.|...++.+.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34455666777888888888888877763332 3344455566666888888888888887765 335667777888888
Q ss_pred hcCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 048179 224 KTGHLDLASHVFKNMSR--I-NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSI 300 (589)
Q Consensus 224 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 300 (589)
..|++++|...|++..+ | +...|..+...+...|++++|...++.+.... |+.......+..+...|+++.|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887765 2 44567777888888888888888888776653 3322222223346677888888888
Q ss_pred HHHHhhcC-CCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHH----HHHHHHHHHHc
Q 048179 301 HGYTVRRF-DFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEE----ALSLFLQMIET 372 (589)
Q Consensus 301 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 372 (589)
+..+.... .++......+...+...|++++|...|++... .+...+..+...+...|++++ |+..|++..+.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 87776333 23334445556778888999999988888764 345677788888888898885 78888888875
Q ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCChhHH-H
Q 048179 373 MVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPGLAVW-V 450 (589)
Q Consensus 373 ~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~ 450 (589)
. +.+...+..+...+...|++++|...++.+.+. -+.+...+..+..+|.+.|++++|.+.++++. ..|+...+ .
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 334567888888899999999999999988863 23335667778889999999999999998874 35665443 3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
.+..++...|+.++|+..++++++..|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 356678889999999999999999888754
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.3e-17 Score=174.65 Aligned_cols=329 Identities=11% Similarity=-0.001 Sum_probs=268.8
Q ss_pred hhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHHHH
Q 048179 178 VVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISGFA 254 (589)
Q Consensus 178 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 254 (589)
.-...++..+.+.|+++.|..++...+.....+ ......++......|+++.|...|+++.. .+...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345556778889999999999999999886554 44555566777789999999999999875 34567888889999
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHH
Q 048179 255 QNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARAL 334 (589)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 334 (589)
+.|++++|+..|++..... +.+...+..+...+...|+.+.|...+..+....+.+...+..+. .+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 9999999999999998862 334567778888899999999999999977754455555554443 47889999999999
Q ss_pred HHhcCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH----HHHHHHHHHH
Q 048179 335 FDQMQSR----DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEE----GRYWFDLMVS 406 (589)
Q Consensus 335 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~ 406 (589)
++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++ |...|+.+.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9987653 23344555678889999999999999999864 3456677888899999999986 8999999886
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHH
Q 048179 407 KYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHA 484 (589)
Q Consensus 407 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 484 (589)
. .+.+...+..+...+.+.|++++|...+++.. ..|+ ...+..+..++...|++++|+..++++++.+|+++..+.
T Consensus 279 l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 F--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 23447789999999999999999999999873 3454 557778888999999999999999999999999887777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 485 LVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 485 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
.++.++...|++++|.+.++++.+...+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7899999999999999999998875543
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.3e-17 Score=165.49 Aligned_cols=466 Identities=14% Similarity=0.102 Sum_probs=322.4
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCC--CCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHH
Q 048179 40 GVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVR--PDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSM 117 (589)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 117 (589)
|+...|.|...|.-.|++..++.+...+...... .-...|-.+.+++-..|+++.|...|.+..+.....-+..+-.|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3445566666666677777777777776654211 11234666677777777777777777776665322223344456
Q ss_pred HHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCC----CccHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 048179 118 LNLYVKCGKMNEAMVAFEKMQR--K-DLVCWSSMINGLVFNG----QPREAVDAYKRMKKEGIDADEVVMMGLIQACADL 190 (589)
Q Consensus 118 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 190 (589)
..+|.+.|+++.+...|+.+.. | +..+...|...|...+ ..+.|..++.+..+.- ..|...|..+...+-..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 7777777777777777777764 2 3334444444454443 3345555555554432 33455555555555443
Q ss_pred CCcHHHHHHHHHHH----HhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CCe------ehHHHHHHHH
Q 048179 191 GDSRFGLSVHGYSI----RRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR-------INI------VTWGALISGF 253 (589)
Q Consensus 191 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~ 253 (589)
.-+. ...++..+. ..+..+.+.+.|.+...+...|+++.|...|+.... +|. .+-..+...+
T Consensus 428 d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 3333 255554433 345557788888888888999999999888877643 122 1223345555
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHH
Q 048179 254 AQNGLAGSTLELLMEMQSCGFEPDSVS-LVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCAR 332 (589)
Q Consensus 254 ~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 332 (589)
-..++++.|.+.|..+... .|.-+. |..++...-..+....|...+..+......++.+++.+...|.+...+.-|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 6677888888999888876 455433 4444433344567888888888888888888888888888999988888888
Q ss_pred HHHHhcCC-----CChhHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHH
Q 048179 333 ALFDQMQS-----RDLISWNVIIASYGI------------HGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVE 395 (589)
Q Consensus 333 ~~~~~~~~-----~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~ 395 (589)
+-|..+.+ +|..+.-+|.+.|.+ .+..++|+++|.+.++.. +-|.+.-+.+...++..|.+.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 86666543 344444444444332 245678999999988864 456778888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC----CCCChhHHHHHHHHHHhcCCchHHHHHHHH
Q 048179 396 EGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS----TEPGLAVWVALLSGCHNHKKFSIGEKVAKK 471 (589)
Q Consensus 396 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 471 (589)
+|..+|....+. ......+|-.+..+|..+|++-.|+++|+... .+.+..+...|..++...|.+.+|.+.+..
T Consensus 664 ~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 664 EARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999884 33456688889999999999999999998863 246788999999999999999999999999
Q ss_pred HhccCCCCchhHHHHHHHHHh-------------------CCChHHHHHHHHHHHhCCCc
Q 048179 472 VLKLNPDDLGIHALVSNFFAM-------------------EQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 472 ~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~g~~ 512 (589)
++.+.|.++.....++.+..+ .+..++|.++|..+...+.+
T Consensus 742 a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 742 ARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999888887765544 45677888899888876554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=4.3e-17 Score=174.56 Aligned_cols=390 Identities=13% Similarity=0.084 Sum_probs=217.6
Q ss_pred HHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHH
Q 048179 50 AYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNE 129 (589)
Q Consensus 50 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 129 (589)
.....|+.++|++++....... +.+...+..+..++...|++++|..+++++++.. +.+...+..+..++...|+.++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444443311 1122234444444444444444444444444432 1223333344444444444444
Q ss_pred HHHHHHhcCC--C-CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHH
Q 048179 130 AMVAFEKMQR--K-DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDAD-EVVMMGLIQACADLGDSRFGLSVHGYSIR 205 (589)
Q Consensus 130 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 205 (589)
|...+++..+ | +.. |..+...+...|+.++|+..++++.+. .|+ ...+..+..++...+..+.|...++.+.+
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 4444444432 1 222 444444444444444444444444443 122 22222333333344444444444433221
Q ss_pred hcCCCc------hHHHHHHHHHH-----HhcCCH---HHHHHHHhhcCC---CCeeh---H----HHHHHHHHhCCChhH
Q 048179 206 RHLNLD------VKVQTSLVDMY-----AKTGHL---DLASHVFKNMSR---INIVT---W----GALISGFAQNGLAGS 261 (589)
Q Consensus 206 ~~~~~~------~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~~---~~~~~---~----~~li~~~~~~g~~~~ 261 (589)
.|+ ......++..+ ...+++ ++|...++.+.+ .++.. + ...+..+...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 010 00111111111 112233 667777776652 12211 1 111334567799999
Q ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC
Q 048179 262 TLELLMEMQSCGFE-PDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS 340 (589)
Q Consensus 262 a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 340 (589)
|+..|+++.+.+.+ |+.... .+...|...|++++|+..|+++..
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~-----------------------------------~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQR-----------------------------------WVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHH-----------------------------------HHHHHHHhcCCcHHHHHHHHHHhh
Confidence 99999999887522 332111 123455666666666666666543
Q ss_pred CC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHhcCCcHHHHHH
Q 048179 341 RD-------LISWNVIIASYGIHGHGEEALSLFLQMIETMV-----------KPDH---STFASLLSALSHSGLVEEGRY 399 (589)
Q Consensus 341 ~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~ 399 (589)
.+ ...+..+..++...|++++|...++++..... .|+. ..+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 11 12344555567777888888888887776421 2332 244566677888999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
.++++.. ..+.+...+..+..++...|++++|++.+++.. ..|+ ...+..++..+...|++++|+.+++++++..|
T Consensus 381 ~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 381 RARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999986 445557888999999999999999999999974 3565 55677777788999999999999999999999
Q ss_pred CCchhHH
Q 048179 478 DDLGIHA 484 (589)
Q Consensus 478 ~~~~~~~ 484 (589)
+++.+..
T Consensus 459 d~~~~~~ 465 (765)
T PRK10049 459 QDPGVQR 465 (765)
T ss_pred CCHHHHH
Confidence 9885544
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.2e-16 Score=157.42 Aligned_cols=477 Identities=13% Similarity=0.068 Sum_probs=343.3
Q ss_pred hHHHHHHhccCCCC---CcccHHHHHHHHHcCCCchhHHHHHHHHHHCC--CCCCcccHHHHHHHHhccCCHHHHHHHHH
Q 048179 26 IVSARKLFEELPLR---GVDTYNSIIIAYSRKESPFEVLGLYNQMIKED--VRPDSSTFTVALKACVSLMDLKMGEEIWR 100 (589)
Q Consensus 26 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 100 (589)
.+.|...|..+... |+-..-.=.+.....+++..|+.+|......+ .+||+.. .+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 57888888877533 22222222223456789999999999976643 3455533 22345568899999999999
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhC---CChHHHHHHHHhcC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCC
Q 048179 101 KAVELGYGNDVFVGSSMLNLYVKC---GKMNEAMVAFEKMQ---RKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGID 174 (589)
Q Consensus 101 ~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 174 (589)
.+++..+ -++..+-.|...-... ..+..+..++.+.- ..|++..+.|...|.-.|++..+..+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9988753 2333333333322222 33455565555543 258889999999999999999999999988765311
Q ss_pred --CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeehHHHH
Q 048179 175 --ADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR--I-NIVTWGAL 249 (589)
Q Consensus 175 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 249 (589)
.-...|..+.+++-..|+++.|..++-...+.....-+..+-.|..+|.+.|+++.+...|+.+.. | +..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 123457888999999999999999998888765333345566789999999999999999999875 3 34566666
Q ss_pred HHHHHhCC----ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh-----hcCCCChhHHHHHHH
Q 048179 250 ISGFAQNG----LAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV-----RRFDFNLVLGTSVID 320 (589)
Q Consensus 250 i~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~ 320 (589)
...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+.. ...+..+. .+.++.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66676664 4577777777776653 4566677777766655443333 44444433 455577888999999
Q ss_pred HhHhcCCHHHHHHHHHhcCC-------CCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 048179 321 MYSKCGVPSCARALFDQMQS-------RDL------ISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH-STFASLLS 386 (589)
Q Consensus 321 ~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~ 386 (589)
.+...|++..|...|..... +|. .+--.+...+-..++.+.|.+.|..+.+. .|.- ..|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999999999987653 222 12223455566778999999999999886 4553 35666653
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc----CCCCChhHHHHHHHHHHh----
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM----STEPGLAVWVALLSGCHN---- 458 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~---- 458 (589)
..-..+...+|...++.+.. ....++..++-+.+.+.+...+..|.+-|+.+ ...+|..+..+|++.|..
T Consensus 539 ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 44455788899999999887 44555667777888999999999888855554 345788888888887643
Q ss_pred --------cCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 459 --------HKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 459 --------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
.+..++|+++|.++++.+|.|.-+-+.+|-+++..|+|.+|..+|.+.++...
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 24578899999999999999999999999999999999999999999998665
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1e-15 Score=160.79 Aligned_cols=424 Identities=11% Similarity=0.051 Sum_probs=277.8
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCCc--ccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChH
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPDS--STFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMN 128 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 128 (589)
..++|++..|++.|++..+.. |+. ..+ .++..+...|+.++|...+++.... -+........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 466777777777777776653 332 223 6666666667777777777776611 1112222233345666667777
Q ss_pred HHHHHHHhcCCC---CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHH
Q 048179 129 EAMVAFEKMQRK---DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIR 205 (589)
Q Consensus 129 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 205 (589)
+|+++|+++.+. |...+..++..+...++.++|++.+.++... .|+...+..++..+...++...|.+.++.+.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777777642 3445556666677777777777777777654 34444443333333334455457777777776
Q ss_pred hcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-Ceeh--H--HHHHHHHH---------hCCC---hhHHHHHHHH
Q 048179 206 RHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRI-NIVT--W--GALISGFA---------QNGL---AGSTLELLME 268 (589)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~--~~li~~~~---------~~g~---~~~a~~~~~~ 268 (589)
.. +.+...+..++....+.|-...|.++..+-++. +... | ...+.-.+ ...+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 64 335666667777777777777777776654420 0000 0 00000111 1122 2445555555
Q ss_pred HHhc-CCCCCH-H----HHHHHHHHHhccCchhhHHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC
Q 048179 269 MQSC-GFEPDS-V----SLVSALLACAQIGFLKLGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSR 341 (589)
Q Consensus 269 m~~~-g~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 341 (589)
+... +-.|.. . ...-.+-++...++...++..++.+. .+.+....+-.++.++|...+++++|..+|..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5442 112322 1 22344556778888888888888888 666666677889999999999999999999987532
Q ss_pred ---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH--H-HHHHHHHHHhcCCcHHHHH
Q 048179 342 ---------DLISWNVIIASYGIHGHGEEALSLFLQMIETMV-----------KPDH--S-TFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 342 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~--~-t~~~ll~a~~~~g~~~~a~ 398 (589)
+......|.-+|...+++++|..+++++.+... .||+ . .+..++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 223346788889999999999999999987321 1222 2 3344566678889999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
+.++.+.. .-+-|......+.+++...|.+.+|++.++.... .|+ ..+....+.+....+++++|..+.+.+++..
T Consensus 437 ~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999976 4566788889999999999999999999977643 454 5566777788888999999999999999999
Q ss_pred CCCchhH
Q 048179 477 PDDLGIH 483 (589)
Q Consensus 477 p~~~~~~ 483 (589)
|+++..-
T Consensus 515 Pe~~~~~ 521 (822)
T PRK14574 515 PEDIPSQ 521 (822)
T ss_pred CCchhHH
Confidence 9888543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=6.1e-15 Score=155.02 Aligned_cols=421 Identities=12% Similarity=0.048 Sum_probs=308.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchH-HHH--HHHHHhCCCccHH
Q 048179 85 ACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCW-SSM--INGLVFNGQPREA 161 (589)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~g~~~~A 161 (589)
...+.|+++.|...+.++.+........++ .++..+...|+.++|+..+++...|+...+ ..+ ...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 356889999999999999987533222344 888889999999999999999997744443 333 4577888999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 048179 162 VDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR- 240 (589)
Q Consensus 162 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 240 (589)
+++|+++.+.... +...+..++..+...++.++|.+.+..+.+.. |+...+..++..+...++..+|.+.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999887432 45666777888899999999999999988763 4455555555555556777679999999876
Q ss_pred -C-CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH------HHHHHH-H----hccCch---hhHHHHHHHH
Q 048179 241 -I-NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSL------VSALLA-C----AQIGFL---KLGKSIHGYT 304 (589)
Q Consensus 241 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------~~ll~~-~----~~~~~~---~~a~~~~~~~ 304 (589)
| +...+..+..++.+.|-...|+++..+-... +.|...-. ...+.. . .....+ +.+..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 4556777888899999999998776653321 11111111 111110 0 011122 3333444444
Q ss_pred hh---cCCCChhH----HHHHHHHhHhcCCHHHHHHHHHhcCCCC--h--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048179 305 VR---RFDFNLVL----GTSVIDMYSKCGVPSCARALFDQMQSRD--L--ISWNVIIASYGIHGHGEEALSLFLQMIETM 373 (589)
Q Consensus 305 ~~---~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 373 (589)
.. ..|+.... ..-.+-++.+.|+..++++.|+.+..+. + .+-.++..+|...+++++|..+|+++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 43 22322222 2233456778899999999999998532 2 345677899999999999999999987643
Q ss_pred -----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC----------CCCC---hhhHHHHHHHHHHcCCHHHHHH
Q 048179 374 -----VKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYK----------IQPT---EKHYACMVDLLARAGEVEEALK 435 (589)
Q Consensus 374 -----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~ 435 (589)
..++......|..++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333457889999999999999999999987311 0122 2344557788899999999999
Q ss_pred HHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 436 IVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 436 ~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
.++++.. -| |...+..+...+...|...+|++.++.+..++|++..+....+.++...|+|.+|..+.+.+.+.-
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999843 34 778889999999999999999999999999999999999999999999999999999987776543
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=5.6e-14 Score=135.35 Aligned_cols=462 Identities=11% Similarity=0.021 Sum_probs=358.5
Q ss_pred HHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHH----HhCCCCChhhHHHHHHHHHhCC
Q 048179 50 AYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAV----ELGYGNDVFVGSSMLNLYVKCG 125 (589)
Q Consensus 50 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g 125 (589)
+|.+..-++.|..++++.++. ++.+...|.+....--..|..+...++.++.+ ..|+..+...|-.-...+-+.|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 444455566677777776654 55566666666665566666666666655433 3455556666655556666666
Q ss_pred ChHHHHHHHHhcCC------CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHH
Q 048179 126 KMNEAMVAFEKMQR------KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSV 199 (589)
Q Consensus 126 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 199 (589)
..-.+..+...... .--.+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..+....+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 65555555554432 12347888888888888888888888888775 333555666666666677888888888
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 048179 200 HGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEP 276 (589)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 276 (589)
+..++..- +.....|-.....+...|+...|+.++...-+ .+...|-+-+.....+.+++.|..+|.+.... .|
T Consensus 573 lqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 573 LQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 88888764 34566777778888889999999999888765 24467888888888999999999999998875 67
Q ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHH
Q 048179 277 DSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-DLISWNVIIASY 353 (589)
Q Consensus 277 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 353 (589)
+...|.--+..---.+..+.|.++++...+.++.-..+|..+...+-+.++++.|+..|..-.+ | .+..|-.+...-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 7777777677667788999999999988899999999999999999999999999999987765 4 446788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEA 433 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 433 (589)
-+.|..-.|..+|++....+ +-|...|...+..=.+.|+.+.|..+..++.+ .++.+...|..-|.+..+.++-..+
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHH
Confidence 88899999999999988775 44677888999999999999999999999988 5566788899889998888887777
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048179 434 LKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKK 513 (589)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 513 (589)
.+.+++.. .|+.+..++...+....++++|.+-|+++++.+|++..+|..+-..+.+.|.-++-.++++...... |
T Consensus 807 ~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P 882 (913)
T KOG0495|consen 807 IDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--P 882 (913)
T ss_pred HHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--C
Confidence 77777765 4666677777888899999999999999999999999999999999999999999999998876543 4
Q ss_pred CCceeEEEEC
Q 048179 514 VPGYSVVEVN 523 (589)
Q Consensus 514 ~~~~s~~~~~ 523 (589)
.-|..|..+.
T Consensus 883 ~hG~~W~avS 892 (913)
T KOG0495|consen 883 THGELWQAVS 892 (913)
T ss_pred CCCcHHHHHh
Confidence 4566666543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.3e-14 Score=133.72 Aligned_cols=272 Identities=12% Similarity=0.061 Sum_probs=207.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCeehHHH----HHHH-HHh-CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCc
Q 048179 220 DMYAKTGHLDLASHVFKNMSRINIVTWGA----LISG-FAQ-NGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGF 293 (589)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----li~~-~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 293 (589)
.-|.+.|+++.|.++++-..+.|..+-.+ |-.. |.+ -.++.+|...-+...... +-+....+.-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45778899999999888777655543322 2221 222 234566665555544332 2333333333333456789
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048179 294 LKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMI 370 (589)
Q Consensus 294 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 370 (589)
++.|...+..+......-......+.-.+-+.|++++|+++|-++.. .++...-.+...|-...++..|++++.+..
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999988855444444445566678889999999999987653 667777778888999999999999997765
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChhHH
Q 048179 371 ETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPGLAVW 449 (589)
Q Consensus 371 ~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 449 (589)
.. ++.|+..+..|...|-+.|+-.+|.+++-.--+ -++.+.++..-|..-|....-+++|+.+|++. ..+|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 54 566778889999999999999999998776554 45667888888889999999999999999997 458999999
Q ss_pred HHHHHHH-HhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCC
Q 048179 450 VALLSGC-HNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 450 ~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
..++..| ++.|++++|.+.++...+..|.+..++..|..+....|.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999876 577999999999999999999999999999999888874
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=3e-13 Score=135.55 Aligned_cols=484 Identities=12% Similarity=0.115 Sum_probs=294.2
Q ss_pred CCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHH
Q 048179 23 KNDIVSARKLFEELPL---RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIW 99 (589)
Q Consensus 23 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 99 (589)
.|++++|.+++.++.. .+...|.+|...|-+.|+.+++...+-..-..+ +-|...|..+.....+.|.+++|.-+|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4999999999998863 457789999999999999999988776554443 335677777878788888999999999
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCc-------------------------------------
Q 048179 100 RKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDL------------------------------------- 142 (589)
Q Consensus 100 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------------------- 142 (589)
.++++.. +++....-.-+.+|-+.|+...|.+-|.++.+.+.
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9998885 34555555567778888888888877777654211
Q ss_pred -------chHHHHHHHHHhCCCccHHHHHHHHHHHCCCC----------------------CChhhHH----HHHHHHHc
Q 048179 143 -------VCWSSMINGLVFNGQPREAVDAYKRMKKEGID----------------------ADEVVMM----GLIQACAD 189 (589)
Q Consensus 143 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------------p~~~t~~----~ll~~~~~ 189 (589)
..++.++..|.+..+++.|......+...... |+...|. .+.-++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23455555566666666666666655541111 1111111 12223334
Q ss_pred cCCcHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhCCChhHHH
Q 048179 190 LGDSRFGLSVHGYSIRRH--LNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR----INIVTWGALISGFAQNGLAGSTL 263 (589)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~ 263 (589)
....+....+.....+.. ...++..+.-+.++|...|++..|..+|..+.. .+...|-.+..+|...|.+++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 444555555555555555 333556777778888888888888888887765 35567888888888888888888
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHhccCchhhHHHHHHHHh-hc--------CCCChhHHHHHHHHhHhcCCHHHHHH
Q 048179 264 ELLMEMQSCGFEPDS-VSLVSALLACAQIGFLKLGKSIHGYTV-RR--------FDFNLVLGTSVIDMYSKCGVPSCARA 333 (589)
Q Consensus 264 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 333 (589)
+.|...+.. .|+. ..-.++...+.+.|+.++|.+.+..+. .+ .+|+..+.....+.|.+.|+.++=..
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888887765 3433 344455566677888888877777665 21 23334444445555566665544222
Q ss_pred HHHhcC--------------C----------------------------------------C-----------ChhHH--
Q 048179 334 LFDQMQ--------------S----------------------------------------R-----------DLISW-- 346 (589)
Q Consensus 334 ~~~~~~--------------~----------------------------------------~-----------~~~~~-- 346 (589)
+-..|. + + ...-|
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 111110 0 0 00012
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC---hhh
Q 048179 347 --NVIIASYGIHGHGEEALSLFLQMIETMV--KPDH---STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT---EKH 416 (589)
Q Consensus 347 --~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 416 (589)
.-++.++++.+++++|+.+...+....+ .++. ..-...+.++...+++..|..+++.+...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3355677788888888888777766432 2222 11233455666778888888888887765333222 234
Q ss_pred HHHHHHHHH-----------------------------------HcCCHHHHHHHHHhc-CCCCChhHHHHHHHH-HH--
Q 048179 417 YACMVDLLA-----------------------------------RAGEVEEALKIVDSM-STEPGLAVWVALLSG-CH-- 457 (589)
Q Consensus 417 ~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~-- 457 (589)
|++...... .++.+.-|+..+-+. ...||.+..+.++.. +.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 443333222 233444444433332 223443333333222 11
Q ss_pred --------hcCCchHHHHHHHHHhccCCC--CchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 458 --------NHKKFSIGEKVAKKVLKLNPD--DLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 458 --------~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
++-..-.+...+.+..++.-. .-.+..++|.+|-..|-..-|..++++..+..
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 111234445555555544432 45678889999999999999999999887644
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=5.2e-13 Score=128.81 Aligned_cols=462 Identities=11% Similarity=0.062 Sum_probs=378.6
Q ss_pred HHHhhhcCCChHHHHHHhccC---CCCCcccHHHHHHHHHcCCCchhHHHHHHH----HHHCCCCCCcccHHHHHHHHhc
Q 048179 16 IIALYGGKNDIVSARKLFEEL---PLRGVDTYNSIIIAYSRKESPFEVLGLYNQ----MIKEDVRPDSSTFTVALKACVS 88 (589)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~ 88 (589)
|.-+|++...++.|.+++... .+.+...|.+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 334566677788888887654 356777888777777788998888887765 4557899999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHH
Q 048179 89 LMDLKMGEEIWRKAVELGYGND--VFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVD 163 (589)
Q Consensus 89 ~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 163 (589)
.|..-.+..+....+..|+... ..+|..-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999988887532 45788888999999999999999998876 366778888887778899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C
Q 048179 164 AYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR--I 241 (589)
Q Consensus 164 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 241 (589)
+|++.... ++-....|.......-..|+...|..++..+.+.... +..+|-+-+..-+...+++.|+.+|.+... +
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 99999886 3334444555555666789999999999999988744 788999999999999999999999998765 6
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHH
Q 048179 242 NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD-SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVID 320 (589)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 320 (589)
+...|.--+...--.+..++|++++++.++. -|+ ...|..+.+.+-+.++++.|+..+..-.+..|..+.+|-.|..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 6677877777777789999999999998876 555 4567778888999999999999988888888999999999999
Q ss_pred HhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHH
Q 048179 321 MYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEG 397 (589)
Q Consensus 321 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a 397 (589)
.--+.|.+-.|+.+|++..- .+...|-..|..-.+.|+.+.|..+..+.++. ++.+...|..-|....+.+.-...
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 99999999999999998763 46789999999999999999999999888876 455566777777776666665555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 048179 398 RYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKL 475 (589)
Q Consensus 398 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 475 (589)
...++.. .-|..+..++..++....+++.|.+.|.+... .|| ..+|.-+...+..+|.-+.-.+++.+....
T Consensus 807 ~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 807 IDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4444433 35677888899999999999999999999743 454 568888999999999999999999999999
Q ss_pred CCCCchhHHHHHH
Q 048179 476 NPDDLGIHALVSN 488 (589)
Q Consensus 476 ~p~~~~~~~~l~~ 488 (589)
+|.+...|...+.
T Consensus 881 EP~hG~~W~avSK 893 (913)
T KOG0495|consen 881 EPTHGELWQAVSK 893 (913)
T ss_pred CCCCCcHHHHHhh
Confidence 9998888877654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.3e-13 Score=123.80 Aligned_cols=416 Identities=15% Similarity=0.144 Sum_probs=277.5
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHh--ccCCHHHH-HHHHHHHHHhCCCCChhhHHHH
Q 048179 41 VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACV--SLMDLKMG-EEIWRKAVELGYGNDVFVGSSM 117 (589)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 117 (589)
+.+=|.|+. ...+|...++.-+|+.|+..|+...+..-..+++..+ ...++.-+ .+.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 445566655 4566788888888999988887766665555554433 22222222 1223333333321 22222
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHH
Q 048179 118 LNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGL 197 (589)
Q Consensus 118 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 197 (589)
+.|.+.+ ++-+...+...+|..||.++++-...+.|.++|++-.....+.+..+||.+|.+.+- ...+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3444443 444444456789999999999999999999999999988889999999999987653 3348
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHh----hcC----CCCeehHHHHHHHHHhCCChhH-HHHHHHH
Q 048179 198 SVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFK----NMS----RINIVTWGALISGFAQNGLAGS-TLELLME 268 (589)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~ 268 (589)
++..+|....+.||..++|+++.+..+.|+++.|++.+- +|. +|...+|..+|..+++.++..+ +..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999999988766554 443 3888899999999999888755 4555555
Q ss_pred HHhc----CCCC----CHHHHHHHHHHHhccCchhhHHHHHHHHhhc-----CCCC---hhHHHHHHHHhHhcCCHHHHH
Q 048179 269 MQSC----GFEP----DSVSLVSALLACAQIGFLKLGKSIHGYTVRR-----FDFN---LVLGTSVIDMYSKCGVPSCAR 332 (589)
Q Consensus 269 m~~~----g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~ 332 (589)
++.. .++| |...|...+..|.+..+.+.|.++++....| ++++ ..-|..+....+....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 2222 4566888999999999999999999988822 2333 234566777788888888889
Q ss_pred HHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----------------
Q 048179 333 ALFDQMQS----RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSG---------------- 392 (589)
Q Consensus 333 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g---------------- 392 (589)
..|+.|.- |+..+...++++....++++-.-+++..++..|-.-+.....-++..+++..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 99988864 5666677777888888888888888888777664333333333333333221
Q ss_pred ----cHHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCChhHHH---HHHHHHHhcC
Q 048179 393 ----LVEEGRY-WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST----EPGLAVWV---ALLSGCHNHK 460 (589)
Q Consensus 393 ----~~~~a~~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~---~l~~~~~~~~ 460 (589)
++.++.+ .-.++. .........++..-.+.|.|+.++|.+++.-... -|-....+ -++.+....+
T Consensus 499 k~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 1111111 111122 2233445677777788888888888888766521 13333333 4555566667
Q ss_pred CchHHHHHHHHHhccC
Q 048179 461 KFSIGEKVAKKVLKLN 476 (589)
Q Consensus 461 ~~~~a~~~~~~~~~~~ 476 (589)
+...|..+++-+.+.+
T Consensus 576 spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAFN 591 (625)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7777777777775443
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=8.2e-13 Score=121.27 Aligned_cols=358 Identities=14% Similarity=0.117 Sum_probs=209.3
Q ss_pred CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHH
Q 048179 37 PLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSS 116 (589)
Q Consensus 37 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 116 (589)
.+....++..||+++++--..+.|.++|++..+...+.+..+||.+|.+-+- ...+++..+|......||..++|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence 3345567888888888888888888888888777777788888888776543 333777888888878888888888
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHH-
Q 048179 117 MLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRF- 195 (589)
Q Consensus 117 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~- 195 (589)
++...++.|+++.|+.. |++++.+|++-|+.|...+|..+|..+.+.++..+
T Consensus 279 lL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 88888888877766533 34455555555555555555555555555444322
Q ss_pred HHHHHHHHHH----hcC----CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---CeehHHHHHHHHHhC
Q 048179 196 GLSVHGYSIR----RHL----NLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR--------I---NIVTWGALISGFAQN 256 (589)
Q Consensus 196 a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~ 256 (589)
+..++.++.. ..+ +.|...+...+..|.+..+.+-|..+-.-... + ...-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 2222222221 111 11233444445555555555555544433321 1 112344556666777
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHH
Q 048179 257 GLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALF 335 (589)
Q Consensus 257 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 335 (589)
...+..+..|..|.-.-.-|+..+...++++..-.+.++....++.... -|...+..+..-+...+++..
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k--------- 482 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK--------- 482 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC---------
Confidence 7777788888888777777888888888888888888888777777666 443333333222222222211
Q ss_pred HhcCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 048179 336 DQMQSRDLIS---WNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP 412 (589)
Q Consensus 336 ~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 412 (589)
..|+... +.....-++. .-.+.....-.+|.+..++| ...+.++..+.+.|..++|.++|..+.++.+-.|
T Consensus 483 ---~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 483 ---LHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred ---CCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 0122111 1111111110 01111222334455554444 4455556667888999999999998866645555
Q ss_pred ChhhHHH---HHHHHHHcCCHHHHHHHHHhc
Q 048179 413 TEKHYAC---MVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 413 ~~~~~~~---l~~~~~~~g~~~~A~~~~~~~ 440 (589)
.....++ +++.-.+....-+|...++-|
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555554 444555666777777776665
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.1e-13 Score=125.35 Aligned_cols=421 Identities=16% Similarity=0.062 Sum_probs=248.2
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCC-hhhHHHHHHHH
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIKEDVRPD-SSTFTVALKACVSLMDLKMGEEIWRKAVELGYGND-VFVGSSMLNLY 121 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 121 (589)
+-....-|.++|++++|++.|.+..+. .|| +..|.....+|...|+++...+--...++. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 444556688999999999999999875 677 667777888888999999988888777765 344 34566677788
Q ss_pred HhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHH---------C--CCCCChhhHHHHHHHHHcc
Q 048179 122 VKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKK---------E--GIDADEVVMMGLIQACADL 190 (589)
Q Consensus 122 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~--~~~p~~~t~~~ll~~~~~~ 190 (589)
-..|++++|+. -+|-.++..+|..+.-.--+.+++.+.-. . .+-|+.....+....+...
T Consensus 194 E~lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 88888888763 23444555555433333333444433211 0 1122222222222211100
Q ss_pred CCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc-CCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHH
Q 048179 191 GDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKT-GHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEM 269 (589)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 269 (589)
-.. .+...+...|...-..+=..+... ..+..|...+.+-.... ..+ ...+..|.-++. |
T Consensus 265 ~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~------~~~--~~~n~~d~~le~---~ 325 (606)
T KOG0547|consen 265 PKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGS------ESS--LSVNEIDAELEY---M 325 (606)
T ss_pred ccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhh------hhh--ccccccchhHHH---H
Confidence 000 000000001111111111111110 01222222221110000 000 000000000000 0
Q ss_pred HhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHH
Q 048179 270 QSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISW 346 (589)
Q Consensus 270 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 346 (589)
..++.....-+.-.|+.-.+..-++.++...+.+...|--+..+|....+.++....|+...+ .|..+|
T Consensus 326 --------A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY 397 (606)
T KOG0547|consen 326 --------AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY 397 (606)
T ss_pred --------HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence 000000000112234555555555555544444444455666677777777777788877654 345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048179 347 NVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR 426 (589)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 426 (589)
..-.+.+.-.+++++|..-|++.+... +-+...|..+.-+..+.+.++++...|++.+++ ++.-++.|+-....+..
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTD 474 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhh
Confidence 666666677788888888888887753 234567777777777888999999999999884 44457888889999999
Q ss_pred cCCHHHHHHHHHhc-CCCCC---------hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCCh
Q 048179 427 AGEVEEALKIVDSM-STEPG---------LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKW 496 (589)
Q Consensus 427 ~g~~~~A~~~~~~~-~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 496 (589)
++++++|.+.|+.. ..+|+ +.+...++..-.+ +|+..|+.+++++++++|....+|..|+.+-.++|+.
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 99999999999885 33333 3333444444334 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 048179 497 EEVAGVRKTMRK 508 (589)
Q Consensus 497 ~~a~~~~~~m~~ 508 (589)
++|+++|++...
T Consensus 554 ~eAielFEksa~ 565 (606)
T KOG0547|consen 554 DEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.2e-11 Score=115.19 Aligned_cols=490 Identities=12% Similarity=0.077 Sum_probs=348.2
Q ss_pred chHhHHHHhhhcCCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 048179 11 NSVGRIIALYGGKNDIVSARKLFEELP---LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACV 87 (589)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 87 (589)
..|-...+.=-..+++..|+.+|+... .+++..|--.+..=.++.....|..+++.....=+..|.. |--.+-.--
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH
Confidence 344444444445678889999998865 5667889888888899999999999999987753333333 223333334
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcC--CCCcchHHHHHHHHHhCCCccHHHHHH
Q 048179 88 SLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQ--RKDLVCWSSMINGLVFNGQPREAVDAY 165 (589)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 165 (589)
..|++..|+++|+.-.+. .|+...|.+.|+.=.+-..++.|..++++.. .|++.+|-.....-.++|+...|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 568999999999988765 7999999999999999999999999999875 689999999998888999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHH----HccCCcHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCCHHHHHHHH-----
Q 048179 166 KRMKKEGIDADEVVMMGLIQAC----ADLGDSRFGLSVHGYSIRRHLNL-DVKVQTSLVDMYAKTGHLDLASHVF----- 235 (589)
Q Consensus 166 ~~m~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~----- 235 (589)
....+. -.|...-..++.++ .....++.|..++...++.-+.. ....|..+...=-+.|+.....+..
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 988764 12333333344444 34567888888888888764332 2445555555555566655544432
Q ss_pred ---hhcCCC---CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHH---HhccCchhhHHH
Q 048179 236 ---KNMSRI---NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDS-------VSLVSALLA---CAQIGFLKLGKS 299 (589)
Q Consensus 236 ---~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~---~~~~~~~~~a~~ 299 (589)
+.+... |-.+|-..+..--..|+.+...++|.+.+.. ++|-. ..|.-+=-+ -....+.+.+++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333333 4457777777777889999999999999876 45532 122222222 245678899999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHh----HhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048179 300 IHGYTVRRFDFNLVLGTSVIDMY----SKCGVPSCARALFDQMQS--RDLISWNVIIASYGIHGHGEEALSLFLQMIETM 373 (589)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 373 (589)
+++....-+|....++.-+=-+| .++.++..|++++....- |-..++...|..-.+.++++.+..++++.++-+
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99988876666666655444444 468899999999987653 677788888888889999999999999999865
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCChhHHHHH
Q 048179 374 VKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPGLAVWVAL 452 (589)
Q Consensus 374 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l 452 (589)
+-|..++......=...|+.+.|..+|+-+.+...+......|.+.|+-=...|.++.|..+++++.. .+-..+|.++
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 44667887777777788999999999999987644444455678888888899999999999999744 4566688777
Q ss_pred HHHHH-----hcC-----------CchHHHHHHHHHhcc----CCCCc--hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 453 LSGCH-----NHK-----------KFSIGEKVAKKVLKL----NPDDL--GIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 453 ~~~~~-----~~~-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
..--. ..+ +...|..+|+++... +|... ..+...-+.-...|.-.+...+-+.|.
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 65433 333 566788888888743 33222 223333344455666666666666554
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=7.2e-13 Score=132.84 Aligned_cols=330 Identities=14% Similarity=0.168 Sum_probs=206.2
Q ss_pred CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048179 155 NGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHV 234 (589)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 234 (589)
.|+.++|.+++.+.++.. +-+...|.+|...|-+.|+.+.+...+-.+--.. +.|...|..+.+...+.|.++.|.-+
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 377777777777776653 2355667777777777777766665554433332 33556777777777777777777777
Q ss_pred HhhcCCCCeehHH---HHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCchhhHHHHHHHHh--
Q 048179 235 FKNMSRINIVTWG---ALISGFAQNGLAGSTLELLMEMQSCGFEPDS----VSLVSALLACAQIGFLKLGKSIHGYTV-- 305 (589)
Q Consensus 235 ~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~-- 305 (589)
|.+..+.++.-|. --+..|.+.|+...|.+.|.++.+...+.|. .+...+++.+...++.+.|.+++....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7776654333332 2345566677777777777777665321111 112222333333333344444444333
Q ss_pred hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------
Q 048179 306 RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIE-------------- 371 (589)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------- 371 (589)
.+-..+.. .++.++..+.+...++.|......+..
T Consensus 310 ~~~~~~~e-------------------------------d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 310 EKDEASLE-------------------------------DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred cccccccc-------------------------------HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 12223333 344444444454555555444444433
Q ss_pred -------------cCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCCHHHHHHH
Q 048179 372 -------------TMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKI--QPTEKHYACMVDLLARAGEVEEALKI 436 (589)
Q Consensus 372 -------------~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 436 (589)
.++.++... ..+.-++.+....+....+..-.... .+ ..+...|.-+.++|...|++.+|+++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 112233222 12222333333333333333333332 43 33477899999999999999999999
Q ss_pred HHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048179 437 VDSMSTE---PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKK 513 (589)
Q Consensus 437 ~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 513 (589)
+..+... .+...|.-+..+|...|.++.|.+.+++++.+.|++..+-..|+.+|.+.|+.|+|.+++..+..-+.++
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9998543 3567899999999999999999999999999999999999999999999999999999999887555455
Q ss_pred CCceeE
Q 048179 514 VPGYSV 519 (589)
Q Consensus 514 ~~~~s~ 519 (589)
.++|.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 556555
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=6e-16 Score=146.30 Aligned_cols=252 Identities=17% Similarity=0.154 Sum_probs=113.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc-CC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 048179 217 SLVDMYAKTGHLDLASHVFKNM-SR----INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQI 291 (589)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 291 (589)
.+...+.+.|++++|.+++++. .. .|...|..+.......+++++|+..++++...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------------------ 74 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------------------ 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------------
Confidence 3455566666666666666332 11 233444444445555666666666666665442
Q ss_pred CchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048179 292 GFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--RDLISWNVIIASYGIHGHGEEALSLFLQM 369 (589)
Q Consensus 292 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 369 (589)
+.++..+..++.. ...+++++|.+++....+ ++...+..++..+...++++++.++++++
T Consensus 75 -----------------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 75 -----------------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred -----------------ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 1233334555555 577888888888776643 56677788888899999999999999998
Q ss_pred HHcC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCC
Q 048179 370 IETM-VKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP-TEKHYACMVDLLARAGEVEEALKIVDSMST--EPG 445 (589)
Q Consensus 370 ~~~~-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~ 445 (589)
.... .+++...|..+...+.+.|+.++|.+.++++.+. .| +......++..+...|+.+++.++++.... +.|
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 7543 3456677888888899999999999999999864 35 477888999999999999998888877632 346
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 446 LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 446 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
+..|..+..++...|+.++|...++++.+..|+|+.....+++++...|+.++|.++++++.
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999999999999999999999999999988764
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=3.3e-13 Score=124.63 Aligned_cols=444 Identities=11% Similarity=0.058 Sum_probs=246.1
Q ss_pred chHhHHHHhhhcCCChHHHHHHhccCC----CCCcc-cHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccH----HH
Q 048179 11 NSVGRIIALYGGKNDIVSARKLFEELP----LRGVD-TYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTF----TV 81 (589)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~ 81 (589)
.+...|.+-|.-.....+|+..++-+. -||.- .--.+...+.+..++..|++.|+..+..-+..+..+- +.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344455556666667777777776543 12322 1122344566667777777777666554222232222 22
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC----------------CCcchH
Q 048179 82 ALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR----------------KDLVCW 145 (589)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~ 145 (589)
+--.+.+.|.++.|..-|+...+. .|+..+--.|+-.+..-|+-++..+.|..|.. |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 222345667777777777776665 35555544455555556777777777766652 111111
Q ss_pred HH-----HHHHHHhCC--CccHHHHHHHHHHHCCCCCChh-------------hHH--------HHHHHHHccCCcHHHH
Q 048179 146 SS-----MINGLVFNG--QPREAVDAYKRMKKEGIDADEV-------------VMM--------GLIQACADLGDSRFGL 197 (589)
Q Consensus 146 ~~-----li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~-------------t~~--------~ll~~~~~~~~~~~a~ 197 (589)
|. .+.-.-+.. +.++++-.--++..--+.||-. .+. .-...+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 11 111111111 1111211111111111122110 000 0012356677777777
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHh--cCCHHHHHHHHhhcCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 048179 198 SVHGYSIRRHLNLDVKVQTSLVDMYAK--TGHLDLASHVFKNMSRINI---VTWGALISGFAQNGLAGSTLELLMEMQSC 272 (589)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 272 (589)
+++.-..+..-..-...-+.|-..+.- -.++..|...-+.....|- .....-...-..+|++++|.+.|++.+..
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 777766655433333333444333333 2345556555554433221 11111112233467777777777777654
Q ss_pred CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHH
Q 048179 273 GFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVI 349 (589)
Q Consensus 273 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 349 (589)
.-.-....| .+.-.+...|++++|...|-.+..-+..+..+.-.+...|....+...|.+++-+... .|+...+.+
T Consensus 520 dasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 520 DASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred chHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 322222222 2222345667777777777666544555666666777777777778888877766543 466677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHHcC
Q 048179 350 IASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDL-LARAG 428 (589)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g 428 (589)
...|-+.|+-..|.+..-+--.. ++.|..|...|...|....-+++++.+|+++. -+.|+..-|..|+.. +.|.|
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcc
Confidence 77787888777777765443222 45566777777777777778888888888776 667888888777654 45678
Q ss_pred CHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCC
Q 048179 429 EVEEALKIVDSMST--EPGLAVWVALLSGCHNHKK 461 (589)
Q Consensus 429 ~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~ 461 (589)
++..|.++++.... +.|...+.-|+..|...|-
T Consensus 675 nyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 88888888887743 3467777777777776663
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.6e-11 Score=114.43 Aligned_cols=427 Identities=12% Similarity=0.092 Sum_probs=318.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048179 110 DVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQA 186 (589)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 186 (589)
+...|-....-=...+++..|..+|++... +++..|-..+..-.++.++..|..++++.+..=...|. .|.--+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHH
Confidence 444555444444556788899999999875 57778888888889999999999999998875333333 23333344
Q ss_pred HHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCeehHHHHHHHHHhCCChhHHHH
Q 048179 187 CADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMS--RINIVTWGALISGFAQNGLAGSTLE 264 (589)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~ 264 (589)
=-..|++..|.++|+..... .|+...|++.|+.=.+-..++.|+.++++.. .|++.+|--...--.+.|+...+..
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 45679999999999988765 7899999999999999999999999999864 5888999888888889999999999
Q ss_pred HHHHHHhcCCCCCH----HHHHHHHHHHhccCchhhHHHHHHHHhhcCCCC--hhHHHHHHHHhHhcCCHHHHHHHH---
Q 048179 265 LLMEMQSCGFEPDS----VSLVSALLACAQIGFLKLGKSIHGYTVRRFDFN--LVLGTSVIDMYSKCGVPSCARALF--- 335 (589)
Q Consensus 265 ~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~--- 335 (589)
+|....+. -.|. ..|.+...--.....++.|.-++..+...+|.+ ..+|..+...--+-|+......+.
T Consensus 229 VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99887764 2233 233333333445678889999999999777776 566666666555566655444332
Q ss_pred -----HhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---hcCCcHHHH
Q 048179 336 -----DQMQSR---DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHS-------TFASLLSAL---SHSGLVEEG 397 (589)
Q Consensus 336 -----~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------t~~~ll~a~---~~~g~~~~a 397 (589)
+.+.+. |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 223232 4567877888888889999999999999875 566321 222222222 356889999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHH----HHcCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 048179 398 RYWFDLMVSKYKIQPTEKHYACMVDLL----ARAGEVEEALKIVDSM-STEPGLAVWVALLSGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 398 ~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 472 (589)
.++|+.+.. -++....++..+--+| .|+.++..|.+++-.. ..-|-..++...|..-.+.++++.+..++++.
T Consensus 386 r~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999986 4544466665554444 5889999999999876 44688999999999999999999999999999
Q ss_pred hccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeE---EEECCEEEEEEecCCCCCChHHHHHHHHHH
Q 048179 473 LKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSV---VEVNGELHAFIMEDKSHNQYEDIVYVLKKL 549 (589)
Q Consensus 473 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l 549 (589)
++-+|.+..+|...+.+-...|+++.|..+|+.+..+.....|.-.| |+ |......+.....+|..+-+.
T Consensus 464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId-------FEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID-------FEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh-------hhhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998766544454322 33 555556666777777766554
Q ss_pred HH
Q 048179 550 YL 551 (589)
Q Consensus 550 ~~ 551 (589)
..
T Consensus 537 t~ 538 (677)
T KOG1915|consen 537 TQ 538 (677)
T ss_pred cc
Confidence 43
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.7e-12 Score=128.49 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=192.3
Q ss_pred CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048179 155 NGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHV 234 (589)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 234 (589)
.|+++.|.+.+....+..-.| ...+.....+..+.|+++.+...+..+.+................+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777776666544431111 1222233344466777777777777776543222222222346677788888888888
Q ss_pred HhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCC
Q 048179 235 FKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFN 311 (589)
Q Consensus 235 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 311 (589)
++++.+ .++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 887765 24456777788888888888888888888877643222 111000
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSAL 388 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~ 388 (589)
...+..++.......+.+...++++.+++ .++.....+...+...|+.++|.+.+++..+. +||... .++.+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~ 304 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPR 304 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhh
Confidence 00111222223333445566666666653 46677788888888999999999999888773 455432 233444
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCCchHHHH
Q 048179 389 SHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPGLAVWVALLSGCHNHKKFSIGEK 467 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 467 (589)
...++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+.+ ...|+...+..+..++...|+.++|.+
T Consensus 305 l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4568899999999888863 3455677888999999999999999999887 446888888888999999999999999
Q ss_pred HHHHHhccC
Q 048179 468 VAKKVLKLN 476 (589)
Q Consensus 468 ~~~~~~~~~ 476 (589)
++++.+.+-
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999987653
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.4e-13 Score=132.12 Aligned_cols=277 Identities=10% Similarity=0.021 Sum_probs=220.1
Q ss_pred CCHHHHHHHHhhcCC--CCe-ehHHHHHHHHHhCCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhccCchhhHHHH
Q 048179 226 GHLDLASHVFKNMSR--INI-VTWGALISGFAQNGLAGSTLELLMEMQSCG--FEPDSVSLVSALLACAQIGFLKLGKSI 300 (589)
Q Consensus 226 g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 300 (589)
-+..+|...|..+++ +|. .....+..+|...+++++|.++|+...+.. ..-+..+|.+.+.-+-+ +.+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356788889988664 343 344557789999999999999999998752 11245567666654322 223333
Q ss_pred HHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048179 301 HGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSR---DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP 376 (589)
Q Consensus 301 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 376 (589)
+..-. ...+..+.+|.++.++|.-.++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 44434 667778999999999999999999999999998764 456777777778888999999999998765 344
Q ss_pred CH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHH
Q 048179 377 DH-STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVAL 452 (589)
Q Consensus 377 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l 452 (589)
.. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....+++..+.+.|+.++|+++++++. .+ .|+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 377788899999999999999999998 45565 6677788899999999999999999973 33 355555566
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
+..+...+++++|.+.++++.++-|+++..+..++.+|.+.|+.+.|+.-|.-|.+..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66788889999999999999999999999999999999999999999999988876544
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4.7e-13 Score=130.08 Aligned_cols=242 Identities=12% Similarity=0.091 Sum_probs=193.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcC---CCChhHHHHHHHHhHhcCCHHH-HHH
Q 048179 258 LAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRF---DFNLVLGTSVIDMYSKCGVPSC-ARA 333 (589)
Q Consensus 258 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~-A~~ 333 (589)
+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+.- -.+..+|.+.+--+-+.-.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999885443 44455667778889999999999999999988332 3456777777655433222221 222
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 048179 334 LFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP-DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP 412 (589)
Q Consensus 334 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 412 (589)
+.+ +....+.+|.++..+|.-+++.+.|++.|++.++. .| ..++|+.+..-+.....+|.|...|+.+.. .
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 222 22346789999999999999999999999999874 45 678898888888889999999999998873 3
Q ss_pred ChhhHH---HHHHHHHHcCCHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHH
Q 048179 413 TEKHYA---CMVDLLARAGEVEEALKIVDSM-STEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVS 487 (589)
Q Consensus 413 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 487 (589)
+..+|+ .+.-.|.+.++++.|+-.|+++ ...| +.+....++..+.+.|+.|+|++++++++.++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 545555 5677899999999999999997 4456 5666777788899999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 048179 488 NFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.++...+++++|+..++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999986
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=3.6e-12 Score=126.18 Aligned_cols=275 Identities=11% Similarity=0.027 Sum_probs=201.1
Q ss_pred cCCHHHHHHHHhhcCCC--CeehHHHH-HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHhccCchhhHHH
Q 048179 225 TGHLDLASHVFKNMSRI--NIVTWGAL-ISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLV--SALLACAQIGFLKLGKS 299 (589)
Q Consensus 225 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 299 (589)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765442 22222222 33346788888888888888764 45543332 23456677788888888
Q ss_pred HHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHhcCCHHHHHHHHHH
Q 048179 300 IHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDL-----------ISWNVIIASYGIHGHGEEALSLFLQ 368 (589)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~ 368 (589)
.++......|.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 88888766777888889999999999999999999988875221 1333344444445556666677776
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC-h
Q 048179 369 MIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPG-L 446 (589)
Q Consensus 369 m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~ 446 (589)
+.+. .+.++.....+..++...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+.+++... .|+ .
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 6443 3456778888999999999999999999988753 4554322 23334456999999999998743 465 4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..+.++...|...+++++|++.|+++++..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788889999999999999999999999965 5577899999999999999999997654
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5e-11 Score=113.82 Aligned_cols=262 Identities=15% Similarity=0.067 Sum_probs=198.2
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHH
Q 048179 242 NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDM 321 (589)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 321 (589)
++........-+...+++.+..+++....+.. +++...+..-|..+...|+...-..+-..++...|..+..|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 33344444455566667777777777666543 44444444444555566665555555555556677778888888888
Q ss_pred hHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 048179 322 YSKCGVPSCARALFDQMQSRD---LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 322 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 398 (589)
|.-.|+.++|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+.- +-....+..+..-|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999998876433 3689999999999999999999988776641 212223444556688889999999
Q ss_pred HHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC--------CC-ChhHHHHHHHHHHhcCCchHHHHH
Q 048179 399 YWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMST--------EP-GLAVWVALLSGCHNHKKFSIGEKV 468 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~~~l~~~~~~~~~~~~a~~~ 468 (589)
++|..+. ++-|+ +...+-+.-+....+.+.+|..+|+.... .+ =.++++.|+.+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999988 44454 66777788888889999999999987631 11 245688899999999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 469 AKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 469 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+++++.+.|.++.+|..+|-+|...|+++.|.+.|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=1.2e-11 Score=123.69 Aligned_cols=486 Identities=14% Similarity=0.041 Sum_probs=269.7
Q ss_pred eeccCCCCcchHhHHHHhhhcCCChHHHHHHhccCCCCC----cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcc
Q 048179 2 IKTNLSAYGNSVGRIIALYGGKNDIVSARKLFEELPLRG----VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSS 77 (589)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 77 (589)
..+|+.||-++|.++|.-|+..|+++.|- +|..|.-++ ...++.++.+..+.++.+.+. .|-..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 35799999999999999999999999998 888886433 345667777666666665544 56666
Q ss_pred cHHHHHHHHhccCCHHH---HHHHHHHHHH----hCCCCChh--------------hHHHHHHHHHhCCChHHHHHHHHh
Q 048179 78 TFTVALKACVSLMDLKM---GEEIWRKAVE----LGYGNDVF--------------VGSSMLNLYVKCGKMNEAMVAFEK 136 (589)
Q Consensus 78 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~g~~~~~~--------------~~~~li~~~~~~g~~~~A~~~~~~ 136 (589)
||..++.+|.+.||+.. .++.+..+.. .|...... .-...+......|.++.+.+++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777776543 2221222111 12110000 001122222223333333333322
Q ss_pred cC---------------------------------C-CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHH
Q 048179 137 MQ---------------------------------R-KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMG 182 (589)
Q Consensus 137 ~~---------------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 182 (589)
++ + ++..+|..++..-..+|+.+.|..++.+|++.|++.+.+-|..
T Consensus 165 ~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 165 VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 22 2 5667788888888888899999999999999888888888888
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCC-----
Q 048179 183 LIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNG----- 257 (589)
Q Consensus 183 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 257 (589)
++.+ .++...++.++.-|...|+.|+..++...+..+...|....+.... +....+++-...-+-.|
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s-----q~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS-----QLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc-----chhhhhhHHHHHHHhcccHhHH
Confidence 7766 7778888888888888888888888887777776655533222211 11222222222222222
Q ss_pred Chh-----HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh----hcCCCChhHHHHHHHHhHhcCCH
Q 048179 258 LAG-----STLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV----RRFDFNLVLGTSVIDMYSKCGVP 328 (589)
Q Consensus 258 ~~~-----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~ 328 (589)
+.+ -....+++..-.|+......| ++..-....|.-+...++-..+. +..+.++..+..++.-|.+.-+.
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111 112222222223433333223 22222334666777777766665 22223344444444444332111
Q ss_pred HHHHHHHH--hcCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-------CHHHHHHHHHHHhcCCc
Q 048179 329 SCARALFD--QMQSRD--LISWNVIIASYGIHGHGEEALSLFLQMIE----TMVKP-------DHSTFASLLSALSHSGL 393 (589)
Q Consensus 329 ~~A~~~~~--~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-------~~~t~~~ll~a~~~~g~ 393 (589)
.-...++. +....+ +..-..++. ++..-+...+++-+..+.. ....| -...-+.++..|++.-+
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vse-ll~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSE-LLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHH-HHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 11111110 000000 000000111 1111111112111111110 00111 11123444555555555
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCCchHHHHH
Q 048179 394 VEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTE-----PGLAVWVALLSGCHNHKKFSIGEKV 468 (589)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~ 468 (589)
..++...-+..... -+ ...|..|++.+......+.|..+.++...+ -|..-+..+.....+.+....+..+
T Consensus 475 ~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 55555433333221 22 257889999999999999999999887432 3455677788888888888888888
Q ss_pred HHHHhcc---CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048179 469 AKKVLKL---NPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKK 513 (589)
Q Consensus 469 ~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 513 (589)
+++..+. .|........+.+.-...|+.+...++.+-+...|+..
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8887753 34444555666677778899999999988888888765
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.7e-11 Score=109.11 Aligned_cols=326 Identities=11% Similarity=0.047 Sum_probs=222.8
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCee-hHHHHHHHH
Q 048179 175 ADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIV-TWGALISGF 253 (589)
Q Consensus 175 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~ 253 (589)
-|...+........+.|..+.|...+...+..- +..|.+-+....-..+.+.+..+.......+.. .--.+..++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344433334444556677777777766665331 223333333222333444444433333322111 111233456
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCC---ChhHHHHHHHHhHhcCCHH-
Q 048179 254 AQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDF---NLVLGTSVIDMYSKCGVPS- 329 (589)
Q Consensus 254 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~- 329 (589)
....+.++++.-.......|++.+...-+....+.-...++++|+.+|+.+.+..|- |..+|+.++-.-..+.++.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 666677888888888888776665555555555566778888999999888855443 4455554442222222221
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 048179 330 CARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYK 409 (589)
Q Consensus 330 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 409 (589)
-|..++ .+-+--+.|...+.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+.++.+.+ -
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i 393 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--I 393 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--c
Confidence 122222 2222234455666777888889999999999998864 22345777888889999999999999999986 3
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHH
Q 048179 410 IQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVS 487 (589)
Q Consensus 410 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 487 (589)
.+.|-..|-.|..+|.-.+...-|+-.|++.. .+| |...|.+|+.+|.+.++.++|+..|++++..+.-+..++..|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 45568889999999999999999999999974 344 7889999999999999999999999999998887889999999
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 048179 488 NFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~m~~ 508 (589)
++|.+.++.++|...+++-.+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999887765
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=2.2e-11 Score=121.27 Aligned_cols=289 Identities=10% Similarity=0.025 Sum_probs=156.3
Q ss_pred hCCCccHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHH
Q 048179 154 FNGQPREAVDAYKRMKKEGIDADEV-VMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLAS 232 (589)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (589)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+++....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 578888888888776554 34433 233345566677888888888888776543333344555677778888888888
Q ss_pred HHHhhcCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCC
Q 048179 233 HVFKNMSR--I-NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFD 309 (589)
Q Consensus 233 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 309 (589)
..++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.++.+ ...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHH-----------------------
Confidence 88888765 2 44567778888888888888888888888876332 222211100
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H-HH
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHST--F-AS 383 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~-~~ 383 (589)
..+..++..-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+.. ||... + ..
T Consensus 230 ---~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l 304 (409)
T TIGR00540 230 ---KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLC 304 (409)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHH
Confidence 0001111111111223333444444442 356666667777777777777777777776643 33221 0 11
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHh--c-CCCCChhHHHHHHHHHHhcC
Q 048179 384 LLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDS--M-STEPGLAVWVALLSGCHNHK 460 (589)
Q Consensus 384 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~ 460 (589)
........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 11112223455555555555443211111113334455555555555555555552 1 22344444444444455555
Q ss_pred CchHHHHHHHHHh
Q 048179 461 KFSIGEKVAKKVL 473 (589)
Q Consensus 461 ~~~~a~~~~~~~~ 473 (589)
+.++|.+++++.+
T Consensus 385 ~~~~A~~~~~~~l 397 (409)
T TIGR00540 385 DKAEAAAMRQDSL 397 (409)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.9e-11 Score=109.67 Aligned_cols=354 Identities=13% Similarity=0.166 Sum_probs=246.1
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHH--HH
Q 048179 106 GYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMM--GL 183 (589)
Q Consensus 106 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~l 183 (589)
+...|.+.+-.....+-+.|....|++.|......-+..|.+.+....-.-+.+.+ ..... |...|...+. .+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHH
Confidence 33455555555555666778888898888887764445555544433222222222 22221 1222222222 23
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------eehHHHHHHHHHhCC
Q 048179 184 IQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRIN------IVTWGALISGFAQNG 257 (589)
Q Consensus 184 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g 257 (589)
..++-.....+++.+-.......|++.+...-+-...+.-...++++|+.+|+++.+.| ..+|+..+ |.++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 44555666778888888888888887777777777777778889999999999998744 34565554 34443
Q ss_pred ChhHHHHHHHHHH--hcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHH
Q 048179 258 LAGSTLELLMEMQ--SCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALF 335 (589)
Q Consensus 258 ~~~~a~~~~~~m~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 335 (589)
+. .+..+.+-. -...+|. | +..+.+-|+-.++.++|...|
T Consensus 312 ~s--kLs~LA~~v~~idKyR~E--T----------------------------------CCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 312 KS--KLSYLAQNVSNIDKYRPE--T----------------------------------CCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hH--HHHHHHHHHHHhccCCcc--c----------------------------------eeeehhHHHHHHhHHHHHHHH
Confidence 32 222222221 1223443 2 234455666677788888888
Q ss_pred HhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 048179 336 DQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP 412 (589)
Q Consensus 336 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 412 (589)
++..+ .....|+.|..-|...++...|++-+++.++-. +.|-..|-.|..+|.-.++..-|+-+|+++.. -.+-
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPn 430 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPN 430 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCC
Confidence 88765 334678888889999999999999999988864 55778899999999999999999999999874 3344
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhc-------cCCCCchhH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLK-------LNPDDLGIH 483 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~ 483 (589)
|...|.+|.++|.+.++.++|++-|.+.-. +.+...+..|...+-+.++.++|.+.+++-++ .+|+...+.
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 588999999999999999999999988733 34557888999999999999999999988886 445556666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 048179 484 ALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 484 ~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
..|+.-+.+.++|++|..+.....
T Consensus 511 ~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 511 LFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHh
Confidence 678888999999999988776654
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1.1e-13 Score=130.93 Aligned_cols=253 Identities=14% Similarity=0.060 Sum_probs=59.1
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHH-HHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 048179 149 INGLVFNGQPREAVDAYKRMKKEGIDADEVVMMG-LIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGH 227 (589)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (589)
...+.+.|++++|++++.+-.....+|+...|.. +...+...++++.|+..++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3344445555555555543332221222222222 222333344555555555555444322 33344444444 45556
Q ss_pred HHHHHHHHhhcCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHhccCchhhHHHHHHHH
Q 048179 228 LDLASHVFKNMSR--INIVTWGALISGFAQNGLAGSTLELLMEMQSCG-FEPDSVSLVSALLACAQIGFLKLGKSIHGYT 304 (589)
Q Consensus 228 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 304 (589)
+++|.++++..-+ ++...+...+..+.+.++++++..+++...... .+++...|......+.+.|+.+.|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555544422 344445555555666666666666666654322 1223333433444444444444444444444
Q ss_pred hhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048179 305 VRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQ---SRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTF 381 (589)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 381 (589)
....|.+..+.+.++..+...|+.+++.+++.... ..|...|..+..++...|+.++|+..|++..+.. +.|+.+.
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 44344444444444444444444444433333322 1233444444445555555555555555544432 2234444
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHH
Q 048179 382 ASLLSALSHSGLVEEGRYWFDLM 404 (589)
Q Consensus 382 ~~ll~a~~~~g~~~~a~~~~~~~ 404 (589)
..+..++...|+.++|.++..++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHT---------------
T ss_pred ccccccccccccccccccccccc
Confidence 44445555555555554444443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=4.1e-11 Score=119.32 Aligned_cols=279 Identities=11% Similarity=0.007 Sum_probs=182.1
Q ss_pred hcCCHHHHHHHHhhcCC--CCe-ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhccCchhhHH
Q 048179 224 KTGHLDLASHVFKNMSR--INI-VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSV--SLVSALLACAQIGFLKLGK 298 (589)
Q Consensus 224 ~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~ 298 (589)
..|+++.|.+.+.+..+ ++. ..+-....+..+.|+++.|.+.+.+..+. .|+.. .-..........|+.+.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 35666666666655543 221 12223334555666667776666666543 23332 2222355556666677776
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC---ChhHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 299 SIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSR---DLISWN----VIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
..++.+....|.++.+...+...|...|+++.|.+.+..+.+. +...+. ....+....+..+++.+.+.++.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666555667777788888888888888888888887742 222221 111122333333444445555555
Q ss_pred cCC---CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhh-HHHHHHH--HHHcCCHHHHHHHHHhcC-CCC
Q 048179 372 TMV---KPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKH-YACMVDL--LARAGEVEEALKIVDSMS-TEP 444 (589)
Q Consensus 372 ~~~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~-~~p 444 (589)
... +.+...+..+...+...|+.++|.+.+++..+. .|+... ...++.. ....++.+.+.+.+++.. ..|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 422 136778888889999999999999999999864 244321 1012222 234578888888888763 345
Q ss_pred Ch---hHHHHHHHHHHhcCCchHHHHHHH--HHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 445 GL---AVWVALLSGCHNHKKFSIGEKVAK--KVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 445 ~~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+. ....++...|.+.|++++|.+.|+ .+++..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 566789999999999999999999 57778886554 66999999999999999999998643
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=5.7e-10 Score=110.60 Aligned_cols=456 Identities=15% Similarity=0.071 Sum_probs=298.9
Q ss_pred cCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHh---ccCCHHHH-------------------HH----HHHHHHHhC
Q 048179 53 RKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACV---SLMDLKMG-------------------EE----IWRKAVELG 106 (589)
Q Consensus 53 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~g 106 (589)
..++++.++.-+.....++...+..++..+...+. ..++.+++ .. .+.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 34666777777777666665555555554433322 22333333 21 122222334
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHH
Q 048179 107 YGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGL 183 (589)
Q Consensus 107 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 183 (589)
+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-......|+..+...+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 567889999999999999999999999998764 35568999999999999999999999887655434544443333
Q ss_pred -HHHHH-ccCCcHHHHHHHHHHHHh--cC--CCchHHHHHHHHHHHhc-----------CCHHHHHHHHhhcCC---CCe
Q 048179 184 -IQACA-DLGDSRFGLSVHGYSIRR--HL--NLDVKVQTSLVDMYAKT-----------GHLDLASHVFKNMSR---INI 243 (589)
Q Consensus 184 -l~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~---~~~ 243 (589)
-..|. +.+..+++..+-..++.. +. ......+..+.-+|... ....++...+++..+ .|+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33443 457777777777777662 11 22344555555555432 123455666666643 234
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhH
Q 048179 244 VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYS 323 (589)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (589)
.+...+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++..|..+.+.....++.|-.....-+..-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 33334445577888999999999999988667788888888888899999999999988888554444333333333333
Q ss_pred hcCCHHHHHHHHHhcCC-----CChh-------HHHHHHHHHHhcCCHHHHHHHHHH-----------------HHHcCC
Q 048179 324 KCGVPSCARALFDQMQS-----RDLI-------SWNVIIASYGIHGHGEEALSLFLQ-----------------MIETMV 374 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~-----~~~~-------~~~~li~~~~~~g~~~~A~~~~~~-----------------m~~~~~ 374 (589)
.-++.++|..+...+.. +.+. .-..-.......++..+|.+..++ |...-+
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 45566665554443321 0000 000000000001111122211111 111112
Q ss_pred C--CCH------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCC
Q 048179 375 K--PDH------STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPG 445 (589)
Q Consensus 375 ~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 445 (589)
. |+. ..+......+...+..++|...+.++.. ..+-....|.-....+...|.+++|.+.|... ...|+
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 2 221 1234455667888999999988888875 33444677777888999999999999988876 44564
Q ss_pred -hhHHHHHHHHHHhcCCchHHHH--HHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 446 -LAVWVALLSGCHNHKKFSIGEK--VAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 446 -~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+.+..++...+...|+...|.. ++..+++++|.++.+|..+|.++.+.|+.++|.+.|....+..
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 6688999999999999999988 9999999999999999999999999999999999999987643
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.2e-10 Score=107.51 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=155.9
Q ss_pred HHhHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQS--R-DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEE 396 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~ 396 (589)
..+.-+|+.-.|..-|+...+ | +...|--+...|+...+.++....|.+..+.+ +-|+.+|..-.....-.+++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 345567888888888887764 2 23336667778888888888888888887764 3345566665666666678888
Q ss_pred HHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCCC-C-ChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 397 GRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMSTE-P-GLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 397 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
|..=|++.++ +.|+ ...|-.+.-+..|.+++++++..|++...+ | -+.+|+.....+..+++++.|.+.|.+++
T Consensus 413 A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 8888888874 4444 566667777777888888888888887433 4 45677777888888888899999999888
Q ss_pred ccCCC------CchhHHHHHHHHH-hCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHH
Q 048179 474 KLNPD------DLGIHALVSNFFA-MEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQYEDIVYVL 546 (589)
Q Consensus 474 ~~~p~------~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 546 (589)
++.|. ++..++.-+.+.. -.+++..|.++++++.+ ..|+.+..|..+
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--------------------------~Dpkce~A~~tl 543 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--------------------------LDPKCEQAYETL 543 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--------------------------cCchHHHHHHHH
Confidence 88888 6666665444433 24778888888887775 345667777777
Q ss_pred HHHHHHHHhcCCcccCCCCcccccccchhhhhhcc
Q 048179 547 KKLYLEMRAISSWLQGHMEEHEEHDPLSTAAQYAP 581 (589)
Q Consensus 547 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 581 (589)
..+.-.+. .+..+.++|+..++||-
T Consensus 544 aq~~lQ~~----------~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 544 AQFELQRG----------KIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHh----------hHHHHHHHHHHHHHHHH
Confidence 66665544 34455566666666653
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=4.6e-11 Score=110.07 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=164.5
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSA 387 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a 387 (589)
....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345667788889999999999999987754 345678888889999999999999999998864 3455677788888
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHH
Q 048179 388 LSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIG 465 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a 465 (589)
+...|++++|...++.+......+.....+..+...+...|++++|.+.+++... .| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999986422233456777888999999999999999998732 34 456788888899999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 466 EKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999898889999999999999999999999888764
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.1e-10 Score=105.75 Aligned_cols=418 Identities=11% Similarity=0.040 Sum_probs=230.4
Q ss_pred CCCCcchHhHHHHhhhcCCChHHHHHHhc--cCCCCCcccHHHHHHHHHcCCCchhHHHHHH----HHHHC---------
Q 048179 6 LSAYGNSVGRIIALYGGKNDIVSARKLFE--ELPLRGVDTYNSIIIAYSRKESPFEVLGLYN----QMIKE--------- 70 (589)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~--------- 70 (589)
+..|+.-.--+.++|.-.|+.+.|..+.. .+...|..+.......+.+..+|++|..++. .+...
T Consensus 45 l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 34455555556677777777777776664 3557788888888888888889999988887 22110
Q ss_pred CCCCCccc----HHHHH-------HHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhC---------------
Q 048179 71 DVRPDSST----FTVAL-------KACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKC--------------- 124 (589)
Q Consensus 71 ~~~p~~~~----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------------- 124 (589)
-+.+|..- -+.-. +.+....+.++|+..+.+++.. |...+.++...-...
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 01111111 01111 1233345667777777766554 332222222111100
Q ss_pred -----C-ChHHHHHHHHhc----CC----------------CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh
Q 048179 125 -----G-KMNEAMVAFEKM----QR----------------KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEV 178 (589)
Q Consensus 125 -----g-~~~~A~~~~~~~----~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 178 (589)
+ +.+.-+.+|+-. .. .|+...-.-..-+...+++.+..++++...+. .++...
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~ 279 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLP 279 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcc
Confidence 0 111111222211 00 12223333344455667777777777777665 234444
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCe---ehHHHHHHHHHh
Q 048179 179 VMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINI---VTWGALISGFAQ 255 (589)
Q Consensus 179 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~ 255 (589)
.+..-|.++...|+...-..+-..+++.- +..+.+|-++.--|.-.|+..+|++.|.+...-|. ..|-.+..+|+-
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~ 358 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG 358 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh
Confidence 44444556666666655555555555443 33566777777777777788888888777655333 467777777777
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHH
Q 048179 256 NGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALF 335 (589)
Q Consensus 256 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 335 (589)
.|..|+|+..+...-+.- +-....+.-+.--|...++...|..++..+....|.|+.+.+-+.-.....+.+.+|...|
T Consensus 359 e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred cchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 777777777776654431 1111112223333566667777777777777666666666666666666666666666666
Q ss_pred HhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChh
Q 048179 336 DQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEK 415 (589)
Q Consensus 336 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 415 (589)
+.... ..+..... ..--..+++.|..+|.+.+.+++|+..|+.... -.+-+..
T Consensus 438 ~~~l~------------------------~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~ 490 (611)
T KOG1173|consen 438 QKALE------------------------VIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDAS 490 (611)
T ss_pred HHHHH------------------------Hhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchh
Confidence 54331 00000000 001233556666666666666666666666654 3344556
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChhHHHHHHHHHH
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSM-STEPGLAVWVALLSGCH 457 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 457 (589)
++.++.-.|...|+++.|.+.|.+. ..+|+..+-..++..+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 6666666666666666666666654 33566555555555443
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.6e-10 Score=98.63 Aligned_cols=299 Identities=14% Similarity=0.147 Sum_probs=162.9
Q ss_pred hCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhcCCHHH
Q 048179 154 FNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNL---DVKVQTSLVDMYAKTGHLDL 230 (589)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 230 (589)
-+.++++|.++|-+|.+.. +-+..+-.++.+.+.+.|..+.|+.+|..+.++.--+ -......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567788888888887741 1122334456667777777777777777766543111 12334456667777888888
Q ss_pred HHHHHhhcCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhc
Q 048179 231 ASHVFKNMSRINI---VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRR 307 (589)
Q Consensus 231 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (589)
|+.+|..+.+.+. .+...|+..|-+..+|++|++.-.++...+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 8888887776333 34556777788888888888877777766544432211
Q ss_pred CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048179 308 FDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRD---LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASL 384 (589)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 384 (589)
...|.-|...+....+.+.|..++.+..+.| +..--.+...+...|++..|++.++...+.+..--+.+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1112333334444455555666665554322 122222334555566666666666665555332223345555
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH-HhcCCCCChhHHHHHHHHHHhcCCch
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIV-DSMSTEPGLAVWVALLSGCHNHKKFS 463 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~ 463 (589)
..+|.+.|+.+++..++..+.+. .+....-..+.+......-.+.|...+ +.+..+|+...+..|+..-...
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d---- 328 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD---- 328 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence 55666666666666666555543 233333333444433333334443333 2234445555444444432211
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCce
Q 048179 464 IGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGY 517 (589)
Q Consensus 464 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 517 (589)
+..|++.+.+.+++.|....++..|.+
T Consensus 329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 123446666777777776666665653
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=2e-08 Score=97.67 Aligned_cols=488 Identities=10% Similarity=0.086 Sum_probs=286.1
Q ss_pred cchHhHHHHhhhcCCChHHHHHHhccCC-----CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHH
Q 048179 10 GNSVGRIIALYGGKNDIVSARKLFEELP-----LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALK 84 (589)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 84 (589)
+.+|-..+....++|++..-+..|+... ......|...+.-....+-++-++.+|+..++- ++..-...+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 4567777777888888888888887642 234557888888888888889999999888764 3334566677
Q ss_pred HHhccCCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHHHhCCCh---HHHHHHHHhcCCC--C--cchHHHHHHH
Q 048179 85 ACVSLMDLKMGEEIWRKAVELG------YGNDVFVGSSMLNLYVKCGKM---NEAMVAFEKMQRK--D--LVCWSSMING 151 (589)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~ 151 (589)
.++..+++++|.+.+..++... .+.+...|.-+.+..++.-+. -....+++.+..+ | -..|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7788889999988888876431 244556777777766655332 2334455555542 2 3479999999
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC----------------------cHHHHHHHHHHHHhcC-
Q 048179 152 LVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGD----------------------SRFGLSVHGYSIRRHL- 208 (589)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~- 208 (589)
|.+.|.+++|.++|++-.+.-. ...-|..+..+|+.-.. ++....-++.+.....
T Consensus 258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 9999999999999998776522 33334445544443211 1111122222222110
Q ss_pred ----------CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---C------CeehHHHHHHHHHhCCChhHHHHHHHHH
Q 048179 209 ----------NLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR---I------NIVTWGALISGFAQNGLAGSTLELLMEM 269 (589)
Q Consensus 209 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~a~~~~~~m 269 (589)
+.++..|..-+. +..|+..+-...|.+..+ | -...|-.+...|-..|+.+.|..+|.+.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 111222222221 123444444444444322 1 1135777777777788888888888777
Q ss_pred HhcCCCCCH----HHHHHHHHHHhccCchhhHHHHHHHHh-h--c---------CCC------ChhHHHHHHHHhHhcCC
Q 048179 270 QSCGFEPDS----VSLVSALLACAQIGFLKLGKSIHGYTV-R--R---------FDF------NLVLGTSVIDMYSKCGV 327 (589)
Q Consensus 270 ~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~-~--~---------~~~------~~~~~~~l~~~~~~~g~ 327 (589)
.+... +.. .+|..-...-.+..+++.|..+.+.+. - + .++ +..+|..+++.--..|-
T Consensus 414 ~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 65432 222 122222233334456666666666554 1 1 011 23345555555566777
Q ss_pred HHHHHHHHHhcCCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH---hcCCcHHHHHHH
Q 048179 328 PSCARALFDQMQSRDLISWNVI---IASYGIHGHGEEALSLFLQMIETMVKPDHS-TFASLLSAL---SHSGLVEEGRYW 400 (589)
Q Consensus 328 ~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~a~---~~~g~~~~a~~~ 400 (589)
++....+|+++.+--+.|=..+ ...+-.+.-++++.+++++-+..-..|+.. .|+..+.-+ ...-.++.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 7777777777765222111111 112334555677777776654443345543 344333322 234568899999
Q ss_pred HHHHHHhcCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 401 FDLMVSKYKIQPTE--KHYACMVDLLARAGEVEEALKIVDSMSTEPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 401 ~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
|+++.+ +.+|.. ..|-.....=.+-|-...|+.++++...... ...|+..|.-....=-+.....+++++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 999987 776652 2233333444466888889999998754322 33566666543322234556788888888
Q ss_pred cCCCCc--hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 475 LNPDDL--GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 475 ~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.-|++- ......+++-.+.|..+.|..++.--.+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 777643 2344467777888888888888865544
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=8.2e-10 Score=101.52 Aligned_cols=286 Identities=10% Similarity=0.038 Sum_probs=202.4
Q ss_pred CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048179 155 NGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHV 234 (589)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 234 (589)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688888888888866654333 2345555666777888888888888888775566777788888888889999998887
Q ss_pred HhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCC
Q 048179 235 FKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFN 311 (589)
Q Consensus 235 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 311 (589)
.+++.+ .++........+|.+.|++.+...++..|.+.|.-.++..-.. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------e 228 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------E 228 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------H
Confidence 776654 5667788888999999999999999999999886554321100 1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSAL 388 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~ 388 (589)
..+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhh
Confidence 11223333333333333333444455442 3455556666777778888888888888777776665 2233456
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCCchHHHH
Q 048179 389 SHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPGLAVWVALLSGCHNHKKFSIGEK 467 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 467 (589)
.+.++...-++..+.-.+.++.. +..+.+|...|.+.+.|.+|...|+.. ...|+...|.-+..++.+.|+.++|.+
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 67777777777777776644443 467788888888888888888888875 456888888888888888888888888
Q ss_pred HHHHHhc
Q 048179 468 VAKKVLK 474 (589)
Q Consensus 468 ~~~~~~~ 474 (589)
+.++.+.
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 8888874
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.6e-09 Score=96.67 Aligned_cols=309 Identities=12% Similarity=-0.008 Sum_probs=217.0
Q ss_pred CCCChhhHHHHHHHHHc--cCCcHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHH-
Q 048179 173 IDADEVVMMGLIQACAD--LGDSRFGLSVHGYSIRRH-LNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGA- 248 (589)
Q Consensus 173 ~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 248 (589)
+.|...+....+.+++. .++...+.+.+-.+.+.. ++.|+.....+...+...|+.++|+..|++....|+.+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 34444555555555544 344444555544444433 56688899999999999999999999999877655443332
Q ss_pred --HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcC
Q 048179 249 --LISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCG 326 (589)
Q Consensus 249 --li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 326 (589)
..-.+.+.|++++...+...+.... .-+...|..-++..-...+.+.|..+-+..+...+.+...+-.-...+...|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhcc
Confidence 2334567888888888777776532 1222233333344455667777777777776555556666655667777889
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-cCCcHHHHHHHH
Q 048179 327 VPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLL-SALS-HSGLVEEGRYWF 401 (589)
Q Consensus 327 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~ 401 (589)
++++|.--|+.... -+..+|..++.+|...|++.+|..+-+...+. ++.+..+...+. ..|. ....-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99999988887653 36789999999999999999998877766554 344556665552 3333 334467888888
Q ss_pred HHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 048179 402 DLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSM-STEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 402 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
+... .+.|+ ....+.+...+.+.|+.++++.++++. ...||....+.|.......+.+++|...|..+++++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8776 45666 566777888899999999999999886 446899899999999999999999999999999999987
Q ss_pred chhHHHH
Q 048179 480 LGIHALV 486 (589)
Q Consensus 480 ~~~~~~l 486 (589)
..+...|
T Consensus 505 ~~sl~Gl 511 (564)
T KOG1174|consen 505 KRTLRGL 511 (564)
T ss_pred hHHHHHH
Confidence 6544433
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=8.8e-10 Score=101.31 Aligned_cols=276 Identities=13% Similarity=0.031 Sum_probs=156.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCC----CcchHHHHHHHHHhCCCccHHHHHH
Q 048179 90 MDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRK----DLVCWSSMINGLVFNGQPREAVDAY 165 (589)
Q Consensus 90 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 165 (589)
|++..|++...+..+++-. ....|..-..+--..|+.+.+-..+.+..++ +...+-+........|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4444554444444443321 1122222233333444444444444444332 2223333344444455555555554
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048179 166 KRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDV-------KVQTSLVDMYAKTGHLDLASHVFKNM 238 (589)
Q Consensus 166 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 238 (589)
+++.+.+.. +.........+|.+.|++.....+...+.+.|.-.|. .+++.+++-....+..+.-...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 444443221 2333444445555555555555555555554433222 35566666666666666666677777
Q ss_pred CC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHH
Q 048179 239 SR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLG 315 (589)
Q Consensus 239 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 315 (589)
++ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++.+.-.+..+......+.++.++
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 64 4566677788888999999999999999888876666 2223345566666666666666665566666777
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQS--RDLISWNVIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
.+|...|.+.+.+.+|...|+...+ ++..+|+-+..++.+.|+..+|.+.+++...
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777765543 5666666666666666666666666665543
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=5.2e-09 Score=94.41 Aligned_cols=463 Identities=13% Similarity=0.089 Sum_probs=267.4
Q ss_pred hhcCCChHHHHHHhccCCCCC---cccHH-HHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHH
Q 048179 20 YGGKNDIVSARKLFEELPLRG---VDTYN-SIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMG 95 (589)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~---~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 95 (589)
+....++..|+.+++.-..-+ ..+.+ -+..++.+.|++++|+..|..+.+.. .|+...+..+.-+.--.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 445677888888876543221 11222 23456678899999999999887754 45666666665555567778888
Q ss_pred HHHHHHHHHhCCCCChhhHHH-HHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCC
Q 048179 96 EEIWRKAVELGYGNDVFVGSS-MLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGID 174 (589)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 174 (589)
.++-... |+....+. |+..-.+.++-++-..+-+.+.+. ..---+|.+.....-.+.+|+++|.+.... .
T Consensus 111 ~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 111 KSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 7776653 34444444 444445566655555544444332 222233444444445678999999998765 3
Q ss_pred CChhhHHHHH-HHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc--CCHHHH--HHHHhhcCCCCeehHHHH
Q 048179 175 ADEVVMMGLI-QACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKT--GHLDLA--SHVFKNMSRINIVTWGAL 249 (589)
Q Consensus 175 p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A--~~~~~~~~~~~~~~~~~l 249 (589)
|+-...+.-+ -+|.+..-++.+.+++.--++.- +.++...|....-..+. |+..++ .++-+...+. | ..
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f 255 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PF 255 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hh
Confidence 4444444433 35567777787887777666542 33445555555444442 333222 1222222211 1 11
Q ss_pred HHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHH-----HHH
Q 048179 250 ISGFAQN-----GLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGT-----SVI 319 (589)
Q Consensus 250 i~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~l~ 319 (589)
+.-.++. ...+.|++++-.+.+. .|.. -..++-.+.+.+++.+|..+..... ...|...+.. ++.
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~-PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD-PTTPYEYILKGVVFAALG 330 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC-CCChHHHHHHHHHHHHhh
Confidence 2222222 2345666666555432 3322 2234444566666666655443322 1111122222 222
Q ss_pred HHhHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcH
Q 048179 320 DMYSKCGVPSCARALFDQMQS-----RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLV 394 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~ 394 (589)
.-......+.-|...|+-+-. .++.--.+|.+.+.-..++++.+..+..+..-- ..|......+..+.+..|.+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNY 409 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcCh
Confidence 222223345567777765543 233445667777777788899888888877654 33444344567888889999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHH-HHHHhcCCchHHHHHHHHH
Q 048179 395 EEGRYWFDLMVSKYKIQPTEKHY-ACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALL-SGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 395 ~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~ 472 (589)
.+|.++|-.+... .+ .|..+| ..|.++|.+++.++-|++++-++....+..++-.+| +-|.+.+.+=-|-++|..+
T Consensus 410 ~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 410 VEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999887642 22 234444 456789999999999999999887655555555555 4599999999999999999
Q ss_pred hccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 048179 473 LKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPG 516 (589)
Q Consensus 473 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 516 (589)
-.++| ++..|. |+......+|..+......+.|+
T Consensus 488 E~lDP-~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 488 EILDP-TPENWE---------GKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HccCC-CccccC---------CccchHHHHHHHHHcCCCCCCch
Confidence 88888 444442 44444455565555433333333
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=1.1e-07 Score=92.78 Aligned_cols=482 Identities=10% Similarity=0.087 Sum_probs=290.0
Q ss_pred CCcchHhHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCC------CCCCcccHHH
Q 048179 8 AYGNSVGRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKED------VRPDSSTFTV 81 (589)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ 81 (589)
.+..+|.-.+.+....|-++-+.++++.-.+-++..-+..|..+...+++++|.+.+...+... -+.+...|..
T Consensus 136 qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 136 QHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred hhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 4456778888888888889999999988776666678888999999999999999998876542 2345556666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCC--CC--hhhHHHHHHHHHhCCChHHHHHHHHhcCCC--CcchHHHHHHHHHhC
Q 048179 82 ALKACVSLMDLKMGEEIWRKAVELGYG--ND--VFVGSSMLNLYVKCGKMNEAMVAFEKMQRK--DLVCWSSMINGLVFN 155 (589)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~ 155 (589)
+-...++..+.-....+ +.+++.|+. +| -..|.+|.+-|.+.|+++.|.++|++..+. .+.-++.+.++|++-
T Consensus 216 lcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 66666655443333222 223333432 33 357899999999999999999999887653 333344444433321
Q ss_pred ----------------CC------ccHHHHHHHHHHHCCC--------CCC---hhhHHHHHHHHHccCCcHHHHHHHHH
Q 048179 156 ----------------GQ------PREAVDAYKRMKKEGI--------DAD---EVVMMGLIQACADLGDSRFGLSVHGY 202 (589)
Q Consensus 156 ----------------g~------~~~A~~~~~~m~~~~~--------~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~ 202 (589)
++ ++-.+.-|+.+.+... .-| ..+|..-. -...|+..+....+.+
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHH
Confidence 11 1222333444333211 011 11121111 1234556666667777
Q ss_pred HHHhc-----CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCee-------hHHHHHHHHHhCCChhHHHHHHHHHH
Q 048179 203 SIRRH-----LNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIV-------TWGALISGFAQNGLAGSTLELLMEMQ 270 (589)
Q Consensus 203 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~ 270 (589)
+++.- ...-...|..+...|-..|+++.|+.+|++..+-+-. +|-.....-.+..+++.|+++++...
T Consensus 373 Av~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 373 AVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 66532 1112357888999999999999999999998874443 34444444556777888888887765
Q ss_pred hcCCC----------C-------CHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHH
Q 048179 271 SCGFE----------P-------DSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARA 333 (589)
Q Consensus 271 ~~g~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 333 (589)
..--. | +...|...+..-...|-++..+.+++.+..---.++.+.....-.+-...-++++.+
T Consensus 453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFK 532 (835)
T ss_pred cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHH
Confidence 32111 1 112234444445566788888888888882222233333333334555667889999
Q ss_pred HHHhcCC----CCh-hHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hcCCcHHHHHHHHHH
Q 048179 334 LFDQMQS----RDL-ISWNVIIASYGI---HGHGEEALSLFLQMIETMVKPDHSTFASLLSAL--SHSGLVEEGRYWFDL 403 (589)
Q Consensus 334 ~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~ 403 (589)
+|++-.. |++ ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+..|+-+- .+-|....|+.++++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9988654 554 467776665543 2358999999999998 6777765444444332 345888899999998
Q ss_pred HHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCChhHHHH---HHHHHHhcCCchHHHHHHHHHhccC-
Q 048179 404 MVSKYKIQPT--EKHYACMVDLLARAGEVEEALKIVDSMS-TEPGLAVWVA---LLSGCHNHKKFSIGEKVAKKVLKLN- 476 (589)
Q Consensus 404 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~- 476 (589)
+.. ++++. ...|+..|.--...=-+.....+|++.. .-|+..+-.- ....-.+.|..++|..++...-++-
T Consensus 612 at~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 612 ATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 776 45444 4456665543332222222333333331 1233332221 2222456677777777776666553
Q ss_pred CC-CchhHHHHHHHHHhCCC
Q 048179 477 PD-DLGIHALVSNFFAMEQK 495 (589)
Q Consensus 477 p~-~~~~~~~l~~~~~~~g~ 495 (589)
|. +...|...-..-.+.|+
T Consensus 690 Pr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 690 PRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred CcCChHHHHHHHHHHHhcCC
Confidence 32 44556666666666676
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.8e-08 Score=95.94 Aligned_cols=434 Identities=13% Similarity=0.125 Sum_probs=242.4
Q ss_pred HHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHH--HHHHH--Hh
Q 048179 48 IIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSS--MLNLY--VK 123 (589)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~~ 123 (589)
+.-+..+|++++|.....+++..+ +-|...+..-+-+..+.+.++.|..+.+. .+. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 344566677777777777777654 33455566666666777777777744433 111 111111 22333 35
Q ss_pred CCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHH
Q 048179 124 CGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDA-DEVVMMGLIQACADLGDSRFGLSVHGY 202 (589)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~ 202 (589)
.+..|+|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..- +...-..++.+.+.. .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----H
Confidence 6778888887775544454455555666777888888888888886654321 111111111111110 000 0
Q ss_pred HHHhcCCC--chHHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCCe----------ehHHHHHHHHHhCCChhHH
Q 048179 203 SIRRHLNL--DVKVQTSLVDMYAKTGHLDLASHVFKNM--------SRINI----------VTWGALISGFAQNGLAGST 262 (589)
Q Consensus 203 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~~a 262 (589)
+......| +-..+-.....+...|++.+|+++++.. .+.|. ..---|.-.+...|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11111122 1112222334556678888888887766 11111 1122344566788999999
Q ss_pred HHHHHHHHhcCCCCCHHHH----HHHHHHHhccCchh-hHHHHHHHH------------hhcCCCChhHHHHHHHHhHhc
Q 048179 263 LELLMEMQSCGFEPDSVSL----VSALLACAQIGFLK-LGKSIHGYT------------VRRFDFNLVLGTSVIDMYSKC 325 (589)
Q Consensus 263 ~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~-~a~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~ 325 (589)
..++...+... .+|.... +.++..-....-.+ .....++.. ..........-+.++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999888775 4554322 22222211111111 111111111 1111112222244555554
Q ss_pred CCHHHHHHHHHhcCCCC-hhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCcHHHHHHH
Q 048179 326 GVPSCARALFDQMQSRD-LISWNVIIASYG--IHGHGEEALSLFLQMIETMVKPDH--STFASLLSALSHSGLVEEGRYW 400 (589)
Q Consensus 326 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 400 (589)
+..+.++++....+... ...+.+++.... +...+..|.+++...-+. .|.. ......+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44566777776666432 233444443322 223477788887776654 3433 3444445556788999999999
Q ss_pred HH--------HHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-----CCCChh----HHHHHHHHHHhcCCch
Q 048179 401 FD--------LMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-----TEPGLA----VWVALLSGCHNHKKFS 463 (589)
Q Consensus 401 ~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~l~~~~~~~~~~~ 463 (589)
+. .+.+. +.. +.+..+++..+.+.++.+.|..++.+.. ..+... +|.-+...-.++|+-+
T Consensus 399 l~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 44432 333 4456678888998888777766666541 112222 3333444456779999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 464 IGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 464 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
+|...++++.+.+|++......+..+|++. +.+.|..+-+.
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999999999999999999886 46666665544
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=5.6e-11 Score=105.67 Aligned_cols=229 Identities=10% Similarity=0.069 Sum_probs=143.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcC
Q 048179 247 GALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCG 326 (589)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 326 (589)
+-+..+|.+.|-+.+|.+.|+.-+.. .|-..||..+-.+|.+......|..++......+|.++....-...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR------ 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR------ 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH------
Confidence 45778888888888888888887776 4555566545444444444444444444444444444433333344
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 048179 327 VPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVS 406 (589)
Q Consensus 327 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 406 (589)
.+-..++.++|.+++++..+.. +.+......+...|.-.++.+-|+.+++++.+
T Consensus 299 -------------------------i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 299 -------------------------IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred -------------------------HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 4444445555555555544432 22333334444444444555555555555544
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCC--hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCch
Q 048179 407 KYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST---EPG--LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLG 481 (589)
Q Consensus 407 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 481 (589)
- |+ -+.+.|+.+.-+|.-.+++|-++.-|++... +|+ ..+|..|......-||+..|.+.|+-++.-+|++..
T Consensus 353 m-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 M-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred h-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 3 32 2344455555555555555555555544311 232 457888888888999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 482 IHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 482 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
++++|+-+-.+.|+.++|..+++......+
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999999998876443
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=3.9e-09 Score=94.19 Aligned_cols=250 Identities=11% Similarity=0.125 Sum_probs=180.0
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh--hcCCCC--hhHHHHHHHHhHhcCCHHH
Q 048179 255 QNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV--RRFDFN--LVLGTSVIDMYSKCGVPSC 330 (589)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~g~~~~ 330 (589)
-+++.++|.++|-+|.+.. +-+..+-.++.+.+.+.|..+.|+.+|+.+. .+.+.+ ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3456677777777776632 2222344455566667777777777777766 222222 2334567788999999999
Q ss_pred HHHHHHhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcCCcHHHHHHHHHH
Q 048179 331 ARALFDQMQSRDL---ISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHS----TFASLLSALSHSGLVEEGRYWFDL 403 (589)
Q Consensus 331 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 403 (589)
|+.+|..+.+.+. .....++..|-...+|++|+++-+++.+.+-.+..+ .|--+........+++.|...+++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999887433 456678899999999999999999999877665543 355556666677899999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC--hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 404 MVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPG--LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 404 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
+.+. -+..+..--.+.+.....|+++.|++.++.... .|+ ..+...|..+|...|+.+++...+.++.+..+. +
T Consensus 206 Alqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~ 282 (389)
T COG2956 206 ALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-A 282 (389)
T ss_pred HHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-c
Confidence 8863 223355556688999999999999999999854 465 346788889999999999999999999998884 4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..-..++..-....-.++|..++.+-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 4455566655555556666665554433
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=7.4e-10 Score=114.69 Aligned_cols=260 Identities=13% Similarity=-0.037 Sum_probs=185.8
Q ss_pred CeehHHHHHHHHHh-----CCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHh---------ccCchhhHHHHHHHHhh
Q 048179 242 NIVTWGALISGFAQ-----NGLAGSTLELLMEMQSCGFEPDS-VSLVSALLACA---------QIGFLKLGKSIHGYTVR 306 (589)
Q Consensus 242 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 306 (589)
+...|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++. ..++.+.|...++.+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445455554321 13457889999988875 4543 34444433322 23457888888888887
Q ss_pred cCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 048179 307 RFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH-STFA 382 (589)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~ 382 (589)
..|.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 7788888999999999999999999999998765 3 45678888899999999999999999998864 432 2333
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCChh-HHHHHHHHHHhc
Q 048179 383 SLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMST-EPGLA-VWVALLSGCHNH 459 (589)
Q Consensus 383 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~-~~~~l~~~~~~~ 459 (589)
.++..+...|++++|...++++... .+|+ ...+..+..+|...|+.++|...++++.. .|+.. .++.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 4444566689999999999998763 2343 55577788999999999999999998743 45444 455555566777
Q ss_pred CCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 460 KKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 460 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
| +.|...++++++..-..+.....+..+|.-.|+-+.+... +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4788888887764322222233377788889998888777 7777654
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.2e-09 Score=107.70 Aligned_cols=230 Identities=15% Similarity=0.165 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHhhc-------CCCCh-hHHHHHHHHhHhcCCHHHHHHHHHhcCC-------C-C
Q 048179 279 VSLVSALLACAQIGFLKLGKSIHGYTVRR-------FDFNL-VLGTSVIDMYSKCGVPSCARALFDQMQS-------R-D 342 (589)
Q Consensus 279 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~ 342 (589)
.+...+...|...|+++.|...++..... ..+.+ ...+.+...|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555677777777777777777776622 12222 2234577788889999999988887753 1 1
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--C
Q 048179 343 ---LISWNVIIASYGIHGHGEEALSLFLQMIET-----MV-KPDHS-TFASLLSALSHSGLVEEGRYWFDLMVSKYK--I 410 (589)
Q Consensus 343 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 410 (589)
..+++.|..+|.+.|++++|...+++..+- |. .|... -++.+...|...+.+++|..++....+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 256777888899999999988888776531 22 22222 466677778999999999999998776543 2
Q ss_pred CCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC---------CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhcc-
Q 048179 411 QPT----EKHYACMVDLLARAGEVEEALKIVDSMST---------EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKL- 475 (589)
Q Consensus 411 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 475 (589)
.++ ..+++.|...|...|++++|.++++++.. .+ ....++.|..+|.+.+++++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 45788999999999999999999998621 12 2456788889999999999999999888743
Q ss_pred ---CCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 476 ---NPDD---LGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 476 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.|++ ...|..|+.+|.++|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444 56788999999999999999999887763
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=1e-07 Score=93.08 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGC 456 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~ 456 (589)
|+..+...+-..|+++.|..+.+.+. +..|+ ++.|..-.+.+...|.+++|..++++... .||...-.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 55566777888999999999999988 44676 66777778889999999999999998743 35554433444445
Q ss_pred HhcCCchHHHHHHHHHhccCCCCc-------hhHHH--HHHHHHhCCChHHHHHHHHHH
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDDL-------GIHAL--VSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~--l~~~~~~~g~~~~a~~~~~~m 506 (589)
.+.++.++|.++..+..+.+-+-. -.|.. -|.+|.++|+|.+|++-+...
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 677899999999888876543111 12333 367788899998888766554
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=6.4e-10 Score=111.61 Aligned_cols=250 Identities=14% Similarity=0.074 Sum_probs=163.4
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 048179 163 DAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRIN 242 (589)
Q Consensus 163 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (589)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35566777788888888888888888888888777 7777777777777778888887777777766554 566
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHH-H-------HhcCCCCCHHHHHHHHHHH--------------hccCchhhHHHH
Q 048179 243 IVTWGALISGFAQNGLAGSTLELLME-M-------QSCGFEPDSVSLVSALLAC--------------AQIGFLKLGKSI 300 (589)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~-m-------~~~g~~p~~~~~~~ll~~~--------------~~~~~~~~a~~~ 300 (589)
..+|+.|..+|...||..- ++..++ | ...|+......+...+++| ...|.++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888877543 222222 1 1122222222222222222 222334444444
Q ss_pred HHHHh--hcCCCChhHHHHHHHHhHh-cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048179 301 HGYTV--RRFDFNLVLGTSVIDMYSK-CGVPSCARALFDQMQS-RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP 376 (589)
Q Consensus 301 ~~~~~--~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 376 (589)
...+. ....|... +++-... ...+++-........+ ++..++.+.+.+-...|+.+.|..++.+|.+.|++.
T Consensus 162 l~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 33332 11111111 1222222 2223333344444444 889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 377 DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 377 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
+..-|..|+-+ .++..-+..+.+.|.+. |+.|+.+++.-.+-.+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 99988888755 77888888888888886 999999998877666655444
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1e-11 Score=82.15 Aligned_cols=50 Identities=32% Similarity=0.498 Sum_probs=46.8
Q ss_pred CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048179 140 KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACAD 189 (589)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 189 (589)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999864
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=1.4e-09 Score=103.12 Aligned_cols=190 Identities=15% Similarity=0.076 Sum_probs=116.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHh
Q 048179 314 LGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSALS 389 (589)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~ 389 (589)
.+..+...|.+.|+.+.|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345556667777777777777776653 34567777777777788888888877777764 343 456666777777
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVA 469 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 469 (589)
..|++++|.+.|+...+. .|+..........+...++.++|.+.+++....-+...|. ........|+...+ +.+
T Consensus 144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLM 218 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHH
Confidence 778888888888777653 3432212222223445667788887775542211112222 12223334555443 233
Q ss_pred HHHh-------ccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 470 KKVL-------KLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 470 ~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+.+. ++.|+.+.+|..+|.+|.+.|++++|...|++..+.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333 3455666778888888888888888888888777543
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.9e-11 Score=80.79 Aligned_cols=50 Identities=36% Similarity=0.602 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048179 341 RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSH 390 (589)
Q Consensus 341 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~ 390 (589)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=1.2e-09 Score=113.07 Aligned_cols=211 Identities=11% Similarity=-0.016 Sum_probs=167.3
Q ss_pred CchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh---------cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCH
Q 048179 292 GFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK---------CGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHG 359 (589)
Q Consensus 292 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 359 (589)
++.+.|...++.+....|.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 356788888998887777777777777665542 3458899999998875 3567888888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHH
Q 048179 360 EEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTE-KHYACMVDLLARAGEVEEALKIVD 438 (589)
Q Consensus 360 ~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 438 (589)
++|...|++..+.+ +.+...+..+..++...|++++|...++++.+. .|+. ..+..+...+...|++++|.+.++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999864 334567888888999999999999999999853 4542 233344556777899999999998
Q ss_pred hcCC--CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 439 SMST--EPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 439 ~~~~--~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+... .|+ ...+..+..++...|++++|+..++++....|.+......++..|...| ++|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8742 354 4456677778889999999999999998889988888889999999888 488887777765
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=2.2e-08 Score=99.69 Aligned_cols=439 Identities=14% Similarity=0.068 Sum_probs=249.3
Q ss_pred CCCCcchHhHHHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCC-CcccHHH
Q 048179 6 LSAYGNSVGRIIALYGGKNDIVSARKLFEELPL---RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRP-DSSTFTV 81 (589)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 81 (589)
++.|+.+|-.|.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-......| |...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345666666666666777777777777766432 123456666666666676666776666544332223 3333333
Q ss_pred HHHHHh-ccCCHHHHHHHHHHHHHhC--C--CCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 048179 82 ALKACV-SLMDLKMGEEIWRKAVELG--Y--GNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNG 156 (589)
Q Consensus 82 ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 156 (589)
.-+.|. +.+.++++..+-.+++... . ......|..+.-+|...- .+. .++.- +..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------~~a--~~~se------R~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------RQA--NLKSE------RDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------hcC--CChHH------HHH
Confidence 344444 3345555555555544421 0 011112222222221100 000 00000 011
Q ss_pred CccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 048179 157 QPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFK 236 (589)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (589)
...++++.+++..+.+.. |......+.--++..++++.|.+...+.++.+...+...|..|.-.+...+++.+|+.+.+
T Consensus 459 ~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 224667777777665322 2223333334466677888888888888887667778888888888888888888888877
Q ss_pred hcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh---hcC
Q 048179 237 NMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSC--GFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV---RRF 308 (589)
Q Consensus 237 ~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~ 308 (589)
.... .|......-+..-..-++.++++.....+... ...|-..+. +-....+....+. ...
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~-----------~~g~~~~lk~~l~la~~q~ 606 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL-----------DEGKLLRLKAGLHLALSQP 606 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh-----------hhhhhhhhhcccccCcccc
Confidence 6543 12222222233334466777777766666432 001100110 0000111111111 101
Q ss_pred CCChhHHHHHHHHhH---hcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048179 309 DFNLVLGTSVIDMYS---KCGVPSCARALFDQMQSRD------LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHS 379 (589)
Q Consensus 309 ~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 379 (589)
...+.++.-+..... +.-..+.....+...+.|+ ...|......+.+.++.++|...+.+..+.. +-...
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~ 685 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSAS 685 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHH
Confidence 111122222211111 1111111112222222233 2356677778889999999998888876642 33455
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHH--HHHhc-CCCC-ChhHHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALK--IVDSM-STEP-GLAVWVALLS 454 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~ 454 (589)
.|......+...|..++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ ...| +...|..|+.
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 66666677888899999999999887 45666 7788999999999998877777 77776 3445 6789999999
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 455 GCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 455 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
.+.+.|+.+.|.+.|.-++++++.+|
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999988766
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=3.9e-09 Score=97.12 Aligned_cols=196 Identities=13% Similarity=0.089 Sum_probs=118.1
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhH
Q 048179 244 VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYS 323 (589)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (589)
..+..+...+...|++++|...+++..+.. |+ +...+..+...|.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~---------------------------------~~~~~~~la~~~~ 76 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD---------------------------------DYLAYLALALYYQ 76 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc---------------------------------cHHHHHHHHHHHH
Confidence 456667777777788888888777776542 32 2223344455555
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHH
Q 048179 324 KCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP-DHSTFASLLSALSHSGLVEEGRY 399 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~ 399 (589)
..|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|..
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 55666666665555442 233455555666666667777777766666532222 23345555666677777777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
.++...+. .+.+...+..+...+...|++++|.+.+++... +++...+..+...+...|+.+.|....+.+.+..
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 77776652 223355666677777777777777777776522 2344455556666667777777777766665543
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.9e-09 Score=91.82 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=139.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLL 424 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 424 (589)
+...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+.+.+ --+-+.++.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 34456678899999999999999998864 33456888888889999999999999999885 2233478888899999
Q ss_pred HHcCCHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHH
Q 048179 425 ARAGEVEEALKIVDSMSTEPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVA 500 (589)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 500 (589)
+..|++++|...|++....|+ ..+|..++.+..+.|+.+.|+..+++.++++|+.+.....++....+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999866554 4578888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 048179 501 GVRKTMRKSGM 511 (589)
Q Consensus 501 ~~~~~m~~~g~ 511 (589)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998876553
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.8e-07 Score=86.43 Aligned_cols=263 Identities=11% Similarity=0.027 Sum_probs=190.7
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHH
Q 048179 241 INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLV-SALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVI 319 (589)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 319 (589)
.|+.....+...+...|+.++|+..|++.+.. .|+..+-. ...-.+...|+.+....+-..+..........|..-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 46778888999999999999999999988764 55543321 1122245667777776666665533323333333333
Q ss_pred HHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEE 396 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~ 396 (589)
......+++..|+.+-++..+ +++..+-.-...+...|++++|.-.|+..+... +-+...|..|+.+|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 444556788888888887765 344455444567888999999999999987642 3456799999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHH-HHHH-HcCCHHHHHHHHHhc-CCCCChh-HHHHHHHHHHhcCCchHHHHHHHHH
Q 048179 397 GRYWFDLMVSKYKIQPTEKHYACMV-DLLA-RAGEVEEALKIVDSM-STEPGLA-VWVALLSGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 397 a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 472 (589)
|.-.-+...+ -++-+..+...+. ..+. .-..-++|.+++++. ..+|+.. ..+.+...|...|.++.++.++++.
T Consensus 387 A~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 9888877765 3344555555442 2222 233457899999886 5578754 5566667799999999999999999
Q ss_pred hccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 473 LKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 473 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
+...| +...++.|++++...+.+.+|++.|..+...
T Consensus 465 L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 465 LIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred Hhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999 5678899999999999999999999988753
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=5.9e-07 Score=87.98 Aligned_cols=424 Identities=12% Similarity=0.100 Sum_probs=233.1
Q ss_pred cCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 048179 53 RKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMV 132 (589)
Q Consensus 53 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 132 (589)
..+++...+++.+.+++. .+-...|....--.+...|+.++|.......++..+ .+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 445666666666666653 233444544444444556666777666666555432 244556655555555566777777
Q ss_pred HHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 048179 133 AFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDAD-EVVMMGLIQACADLGDSRFGLSVHGYSIRRHL 208 (589)
Q Consensus 133 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 208 (589)
.|..... .|...|.-+.-.-++.++++.....-.++.+. .|+ ...|.....+.--.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7766543 24455555555555666666666666665553 222 33445555555566777777777766665542
Q ss_pred -CCchHHHHHHH------HHHHhcCCHHHHHHHHhhcCCC--Ce-ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 048179 209 -NLDVKVQTSLV------DMYAKTGHLDLASHVFKNMSRI--NI-VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDS 278 (589)
Q Consensus 209 -~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 278 (589)
.|+...+.-.. ....+.|..+.|.+.+...... |- ..-......+.+.++.++|..++..++.. .||.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 33333332221 1233456666666655544331 11 12223344556666666666666666654 4555
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHH-HHHHhcCCC---ChhHHHHHHHHHH
Q 048179 279 VSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCAR-ALFDQMQSR---DLISWNVIIASYG 354 (589)
Q Consensus 279 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~ 354 (589)
.-|.-.+. .++.+-.+..++. .+|....+. ....-..=+....
T Consensus 253 ~~Yy~~l~---------------------------------~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 253 LDYYEGLE---------------------------------KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN 299 (700)
T ss_pred HHHHHHHH---------------------------------HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC
Confidence 55443333 2222111111222 333333220 0000000001011
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----C------------CCCChh--
Q 048179 355 IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKY-----K------------IQPTEK-- 415 (589)
Q Consensus 355 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~------------~~p~~~-- 415 (589)
...-.+..-.++..+.+.|+++-...+.++ +-.....+ +.++....+ + -+|...
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 111123344566677777776533333332 32211111 222221110 1 145543
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC-CCChh-HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMST-EPGLA-VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
++-.++..+-+.|+++.|..+++.... .|+.+ .|..-...+...|+++.|...++++.+++-.|...-..-+.-..++
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 445678889999999999999999754 46543 4555556788999999999999999999977776666788888899
Q ss_pred CChHHHHHHHHHHHhCCCcc-----CCceeEEEE
Q 048179 494 QKWEEVAGVRKTMRKSGMKK-----VPGYSVVEV 522 (589)
Q Consensus 494 g~~~~a~~~~~~m~~~g~~~-----~~~~s~~~~ 522 (589)
.+.++|.++.....+.|..- +..|.|..+
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 99999999999888777521 123677654
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=2.2e-08 Score=94.92 Aligned_cols=228 Identities=10% Similarity=-0.006 Sum_probs=147.8
Q ss_pred ChhHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHH
Q 048179 258 LAGSTLELLMEMQSCG-FEPD--SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARAL 334 (589)
Q Consensus 258 ~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 334 (589)
..+.++.-+.+++... ..|+ ...+......+...|+.+.|...+.......+.+...++.+...|...|+++.|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 1121 223444445556666666666666666655566777888899999999999999999
Q ss_pred HHhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Q 048179 335 FDQMQS--R-DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQ 411 (589)
Q Consensus 335 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 411 (589)
|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|+.... ...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~ 196 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLD 196 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCC
Confidence 998864 3 4567888888899999999999999998875 34433222222234456789999999977654 333
Q ss_pred CChhhHHHHHHHHHHcCCHHH--HHHHHHhc-CCC----C-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC-CCchh
Q 048179 412 PTEKHYACMVDLLARAGEVEE--ALKIVDSM-STE----P-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP-DDLGI 482 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~ 482 (589)
|+...+ .+.. ...|+..+ +.+.+.+. ... | ...+|..+...+...|++++|+..|+++++.+| +...+
T Consensus 197 ~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 197 KEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred ccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 443322 2333 33455433 33333322 111 1 345799999999999999999999999999997 55555
Q ss_pred HHHHHHHHHh
Q 048179 483 HALVSNFFAM 492 (589)
Q Consensus 483 ~~~l~~~~~~ 492 (589)
-..+..+...
T Consensus 274 ~~~~~e~~~~ 283 (296)
T PRK11189 274 RYALLELALL 283 (296)
T ss_pred HHHHHHHHHH
Confidence 5545544333
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=1.6e-08 Score=99.94 Aligned_cols=199 Identities=14% Similarity=0.174 Sum_probs=123.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhc-----C-CCCC-HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHH
Q 048179 249 LISGFAQNGLAGSTLELLMEMQSC-----G-FEPD-SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDM 321 (589)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 321 (589)
+...|...+++++|..+|+++... | ..|. ..++..+..+|.+.|+++.|...++.+
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A----------------- 309 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA----------------- 309 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH-----------------
Confidence 445566666677776666666432 1 1111 234555666677777777776654433
Q ss_pred hHhcCCHHHHHHHHHhcCC---CCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhc
Q 048179 322 YSKCGVPSCARALFDQMQS---RDL-ISWNVIIASYGIHGHGEEALSLFLQMIET---MVKPD----HSTFASLLSALSH 390 (589)
Q Consensus 322 ~~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~t~~~ll~a~~~ 390 (589)
.+++++..- +.+ ..++.++..+...+++++|..++++..+. -+.++ ..++..+...+.+
T Consensus 310 ----------l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 310 ----------LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred ----------HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 233332111 111 12344455566666666666666654431 12222 2467788888888
Q ss_pred CCcHHHHHHHHHHHHHhc----C-CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcC--------CCCC-hhHHHHHHHH
Q 048179 391 SGLVEEGRYWFDLMVSKY----K-IQPT-EKHYACMVDLLARAGEVEEALKIVDSMS--------TEPG-LAVWVALLSG 455 (589)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~ 455 (589)
.|.+++|.++|+++.+.. + ..+. ...++.|...|.+.++..+|.++|.+.. ..|+ ..+|..|..+
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 888888888888876542 1 1111 4456778888888888888888877642 1244 3478899999
Q ss_pred HHhcCCchHHHHHHHHHhc
Q 048179 456 CHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~ 474 (589)
|...|+++.|+++.+++..
T Consensus 460 Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHcccHHHHHHHHHHHHH
Confidence 9999999999999988873
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=4.8e-07 Score=90.78 Aligned_cols=428 Identities=12% Similarity=0.047 Sum_probs=209.8
Q ss_pred HHHHcCCCchhHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC--
Q 048179 49 IAYSRKESPFEVLGLYNQMIKEDVRPDSS-TFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCG-- 125 (589)
Q Consensus 49 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 125 (589)
..+...|++++|++.++.-... -+|.. .+......+.+.|+.++|..++..+++.++ .|..-|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 4456778888888888664433 33444 344556667788888888888888887752 24444555555542222
Q ss_pred ---ChHHHHHHHHhcCC--CCcchHHHHHHHHHhCCCcc-HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHH
Q 048179 126 ---KMNEAMVAFEKMQR--KDLVCWSSMINGLVFNGQPR-EAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSV 199 (589)
Q Consensus 126 ---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 199 (589)
..+....+++++.. |...+...+.-.+.....+. .+...+..+...|+++ +|+.+-..|...........+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 34445555555543 22222222222222212222 2333444445555432 333333333332222222222
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-CCCee--hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 048179 200 HGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMS-RINIV--TWGALISGFAQNGLAGSTLELLMEMQSCGFEP 276 (589)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 276 (589)
+....... ...+.+.... ..-. .|... ++..+.+.|...|++++|++++++.++. .|
T Consensus 166 ~~~~~~~l---------------~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tP 225 (517)
T PF12569_consen 166 VEEYVNSL---------------ESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TP 225 (517)
T ss_pred HHHHHHhh---------------cccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CC
Confidence 22222110 0000000000 0000 12222 2344455666667777777777766665 34
Q ss_pred C-HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCh----------hH
Q 048179 277 D-SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDL----------IS 345 (589)
Q Consensus 277 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~ 345 (589)
+ ...|..-...+-+.|++..|....+.+..-...|..+-+-.+..+.++|++++|.+++....+++. ..
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 4 345555566666677777776666666655555666666677777777777777777776665431 12
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHHc--CC-------------CCCHHHHHHHHHHHhcCCc-------HHHHHHHH
Q 048179 346 W--NVIIASYGIHGHGEEALSLFLQMIET--MV-------------KPDHSTFASLLSALSHSGL-------VEEGRYWF 401 (589)
Q Consensus 346 ~--~~li~~~~~~g~~~~A~~~~~~m~~~--~~-------------~p~~~t~~~ll~a~~~~g~-------~~~a~~~~ 401 (589)
| .....+|.+.|++..|++.|....+. .+ +.+..+|..++...-+... ...|.+++
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iY 385 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIY 385 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3 22345677777777777666554431 01 1222233333332221111 12333443
Q ss_pred HHHHHhcCCCCCh-----------hhHHHHHHHH---HHcCCHHHHHHHHHh-----------c----CCCCChhHHHHH
Q 048179 402 DLMVSKYKIQPTE-----------KHYACMVDLL---ARAGEVEEALKIVDS-----------M----STEPGLAVWVAL 452 (589)
Q Consensus 402 ~~~~~~~~~~p~~-----------~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~~p~~~~~~~l 452 (589)
-.+.......... .--..+..-. .+...-+++...-.+ . +.+.|......
T Consensus 386 l~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge- 464 (517)
T PF12569_consen 386 LELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE- 464 (517)
T ss_pred HHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH-
Confidence 3333210000000 0000011000 111111112111100 0 01112212111
Q ss_pred HHHHHhc-CCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 453 LSGCHNH-KKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 453 ~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
-+... .=.++|.+.++-+.+..|++..+|..-..+|.+.|++--|++.+++
T Consensus 465 --kL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 465 --KLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred --HHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 12222 3468899999999999999999999999999999999999887764
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=3.3e-08 Score=89.36 Aligned_cols=416 Identities=11% Similarity=0.034 Sum_probs=256.8
Q ss_pred HHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCH
Q 048179 16 IIALYGGKNDIVSARKLFEELPL---RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDL 92 (589)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 92 (589)
+..+|-+.|++++|...+..+.+ ++...|-.|.-++.-.|.+.+|..+-.... -++..-..++...-+.++-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcH
Confidence 34556688999999999987653 345667777777777788888888765532 2334445566666788888
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCC--CcchHHH-HHHHHHhCCCccHHHHHHHHHH
Q 048179 93 KMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRK--DLVCWSS-MINGLVFNGQPREAVDAYKRMK 169 (589)
Q Consensus 93 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 169 (589)
+.-..+++.+... ..-.-+|.++..-.-.+.+|++++.+.... +-...|. +.-+|.+..-++-+.+++..-.
T Consensus 138 k~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 8877777766432 233445666555566789999999998864 4444554 3446678888888888887776
Q ss_pred HCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc-----CCHHHHHHHHhhcCCCCe
Q 048179 170 KEGIDAD-EVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKT-----GHLDLASHVFKNMSRINI 243 (589)
Q Consensus 170 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~ 243 (589)
+. .|| ....+..+...-+.=+-..+++-...+.+.+...-+ .+.-.++. ..-+.|.+++-.+.+.=+
T Consensus 213 ~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IP 285 (557)
T KOG3785|consen 213 RQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIP 285 (557)
T ss_pred Hh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhCh
Confidence 64 344 333343333333332333333333444333321111 11222221 233556666655444323
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HhccCchhhHHHHHHHHh-hcCCCChhHH-H
Q 048179 244 VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLA-----CAQIGFLKLGKSIHGYTV-RRFDFNLVLG-T 316 (589)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~-~~~~~~~~~~-~ 316 (589)
.+--.|+--|.+.++.++|..+.+++.-. .|-......+..+ .....++..|.+.|+.+- ++...|.... .
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 33444566688999999999888776532 3444333333322 233345667777777766 5555444332 3
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcC
Q 048179 317 SVIDMYSKCGVPSCARALFDQMQS----RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFAS-LLSALSHS 391 (589)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~a~~~~ 391 (589)
++...+.-..++++.+..++.+.. .|...+ .+.++++..|++.+|.++|-+.....++ |..+|.+ |.++|.+.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 444555556678888887777764 444444 4678899999999999999776554444 4556654 55778899
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHhcCC-CCChhHHHHHHHHH
Q 048179 392 GLVEEGRYWFDLMVSKYKIQPTEK-HYACMVDLLARAGEVEEALKIVDSMST-EPGLAVWVALLSGC 456 (589)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~ 456 (589)
+.++.|+.++-.+. .+.+.. ....+..-+.+++.+=-|-+.|+.+.. .|++..|..--.+|
T Consensus 442 kkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGAC 504 (557)
T ss_pred CCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchH
Confidence 99999977765543 222322 334455678889998888888888754 68888886544444
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=2.9e-07 Score=83.03 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=176.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHH---HHHHhCCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHhccC
Q 048179 217 SLVDMYAKTGHLDLASHVFKNMSRINIVTWGALI---SGFAQNGLAGSTLELLMEMQSCGFEPDSVSL-VSALLACAQIG 292 (589)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~ 292 (589)
-|...+...|++.+|..-|....+.|+..|.++. ..|...|+..-|+.-|.+.++. +||-..- ..-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3455555666666676666666665555554443 4566666666666666666654 5553221 11122345666
Q ss_pred chhhHHHHHHHHhhcCCCC---hhH------------HHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 048179 293 FLKLGKSIHGYTVRRFDFN---LVL------------GTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYG 354 (589)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~---~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 354 (589)
.++.|..-|..+....+.+ ... ....+..+.-.|+...|+.....+.+ -|...+..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 6666666666665222211 111 11223334456677777777776654 35555666667777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChh----hHHHH---------H
Q 048179 355 IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEK----HYACM---------V 421 (589)
Q Consensus 355 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---------~ 421 (589)
..|.+..|+.-++..-+.. .-+..++.-+-..+...|+.+.++...++.. .+.||.. .|..| +
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 7777777777666655432 2233344444555566677777777666666 4455532 12211 1
Q ss_pred HHHHHcCCHHHHHHHHHhc-CCCCChh-----HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCC
Q 048179 422 DLLARAGEVEEALKIVDSM-STEPGLA-----VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
....+.++|.++++-.++. ..+|... .+..+-.+++..+++.+|++...+++.++|++..++...+.+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 2234566777777766663 4445422 344455566788899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 048179 496 WEEVAGVRKTMRKSG 510 (589)
Q Consensus 496 ~~~a~~~~~~m~~~g 510 (589)
+++|+.-++.+.+.+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887643
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=8.1e-09 Score=99.50 Aligned_cols=249 Identities=12% Similarity=0.053 Sum_probs=189.3
Q ss_pred HhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 048179 288 CAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALS 364 (589)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 364 (589)
+.+.|++..|.-.|+..+...|.+...|.-|.......++-..|+..+.++.+ .|....-+|.-.|...|.-.+|++
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677888888888888888888889999999888888888888888888876 355677777778888898899999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 048179 365 LFLQMIETMVK--------PDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKI 436 (589)
Q Consensus 365 ~~~~m~~~~~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 436 (589)
.|+.-+...++ ++..+-.. ........+....++|-++....+..+|.++..+|.-+|--.|.+++|.+-
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887654311 00000000 122233344556666766666556668899999999999999999999999
Q ss_pred HHhc-CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 048179 437 VDSM-STEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKV 514 (589)
Q Consensus 437 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 514 (589)
|+.+ ..+| |...|+-|+.+++.-.+.++|+.+|.+++++.|.-..+.+.|+-.|...|.++||.+.+-.+....-+..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 9997 4456 6778999999999999999999999999999999999999999999999999999999888765332210
Q ss_pred CceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048179 515 PGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMR 554 (589)
Q Consensus 515 ~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (589)
. ..+..++ .+.|+..|......|.
T Consensus 533 ~---------------~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 533 N---------------HNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred c---------------cccCCcc-hHHHHHHHHHHHHHcC
Confidence 0 0111222 5778888876555554
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=3.3e-09 Score=94.63 Aligned_cols=238 Identities=12% Similarity=0.038 Sum_probs=163.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHH-HHHH
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSR--INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVS-ALLA 287 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~ 287 (589)
|-.--+-+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-..|.+..+++.|+.++.+-.+. .|-.+||.. ..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 334446788999999999999999988754 67789999999999999999999999998886 677777632 3333
Q ss_pred HhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 048179 288 CAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALS 364 (589)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 364 (589)
+...+. .++|.++|+...+ .++.+...+..+|.-.++++-|+.
T Consensus 300 ~eam~~----------------------------------~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 300 HEAMEQ----------------------------------QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHHHh----------------------------------HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 333344 4455555554443 234444445556666677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 048179 365 LFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT--EKHYACMVDLLARAGEVEEALKIVDSMST 442 (589)
Q Consensus 365 ~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (589)
.++++.+.|+. ++..|..+.-+|.-.+.+|-++..|.++... .-.|+ .+.|-.+.......|++.-|.+-|+-...
T Consensus 346 yYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 346 YYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 77777777744 4566666777777777777777777776654 33344 45666677777777777777777766532
Q ss_pred -CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHH
Q 048179 443 -EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALV 486 (589)
Q Consensus 443 -~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 486 (589)
.| ....++.|.-.-.+.|+++.|..++..+....|+-.....++
T Consensus 424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 23 455677777667777777777777777777777654444333
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=1.7e-07 Score=93.98 Aligned_cols=282 Identities=11% Similarity=0.065 Sum_probs=167.9
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CCee-hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh----c--
Q 048179 220 DMYAKTGHLDLASHVFKNMSR--INIV-TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACA----Q-- 290 (589)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~-- 290 (589)
..+...|++++|.+.++.-.. .|.. ........+.+.|+.++|..+|..+++. .|+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 344566777777777765443 2332 3344556667777777777777777776 455555554444443 1
Q ss_pred cCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCH-HHHHHHHHhcCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 048179 291 IGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVP-SCARALFDQMQSRDL-ISWNVIIASYGIHGHGEEALSLFLQ 368 (589)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 368 (589)
....+....+++......|-.... ..+.-.+.....+ ..+...+..+..+.+ .+++.+-..|.......-..+++..
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 113445555555554333222111 1111111111111 123333333334443 3455555555544444444455554
Q ss_pred HHHc----C----------CCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHH
Q 048179 369 MIET----M----------VKPDH--STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVE 431 (589)
Q Consensus 369 m~~~----~----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 431 (589)
.... + -+|.. .++..+...|...|++++|+++.+.+.+. .|+ ++.|..-.+.|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHH
Confidence 4322 1 12333 24455566678899999999999998853 466 788888899999999999
Q ss_pred HHHHHHHhcCC-C-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccC--CCC-------chhHHHHHHHHHhCCChHHHH
Q 048179 432 EALKIVDSMST-E-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN--PDD-------LGIHALVSNFFAMEQKWEEVA 500 (589)
Q Consensus 432 ~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~ 500 (589)
+|.+.++.... . -|...-+-....+.+.|++++|++.+....+.+ |.. .......|.+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999988743 3 355555555666788999999999998887654 221 122344678899999999998
Q ss_pred HHHHHHH
Q 048179 501 GVRKTMR 507 (589)
Q Consensus 501 ~~~~~m~ 507 (589)
+.+....
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 8776654
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-05 Score=82.95 Aligned_cols=144 Identities=12% Similarity=0.211 Sum_probs=117.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048179 342 DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMV 421 (589)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 421 (589)
.+..|+.+..+-.+.|...+|++-|-+ .-|+..|.-++..+.+.|.+++-.+++..+.++ ...|..+ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 345799999999999999999988754 336778999999999999999999999988876 5566654 5689
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHH
Q 048179 422 DLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAG 501 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 501 (589)
-+|++.+++.+-++++.. ||..-....+.-|...|.++.|.-++.. .+.|..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877643 7777788888889999999988877754 4567788888888888888876
Q ss_pred HHHHH
Q 048179 502 VRKTM 506 (589)
Q Consensus 502 ~~~~m 506 (589)
.-+++
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 65544
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.05 E-value=2.7e-07 Score=94.36 Aligned_cols=494 Identities=15% Similarity=0.053 Sum_probs=262.4
Q ss_pred chHhHHHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCC-CCCcccHHHHHHHH
Q 048179 11 NSVGRIIALYGGKNDIVSARKLFEELPL---RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDV-RPDSSTFTVALKAC 86 (589)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~ 86 (589)
..|..|-..|....+...|.+.|+..-+ .+..++......|++..+++.|..+.-.--+... ..-...|..+--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4678888888888888889999987654 4567888899999999999999887332222110 00111222233345
Q ss_pred hccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHH---HHHHHHhCCCccHHHH
Q 048179 87 VSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSS---MINGLVFNGQPREAVD 163 (589)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~ 163 (589)
...++...+..-|+...+.. +.|...|..|..+|.++|+...|.++|.+...-++.++-. .....+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 56677888888888877765 4478899999999999999999999998877644333222 1223356788888888
Q ss_pred HHHHHHHC------CCCCChhhHHHHHHHHHccCCcHHHHHHHHH-------HHHhcCCCchHHHHHHHHHH--------
Q 048179 164 AYKRMKKE------GIDADEVVMMGLIQACADLGDSRFGLSVHGY-------SIRRHLNLDVKVQTSLVDMY-------- 222 (589)
Q Consensus 164 ~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~-------- 222 (589)
.+...... +...-..++..+...+...|-...+..+++. ........+...|-.+.+++
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 77776432 1111122333333333333333333333322 22222122222222222211
Q ss_pred -----------Hh----cCCH---H---HHHHHHhhcCC--CCeehHHHHHHHHHh----C----CChhHHHHHHHHHHh
Q 048179 223 -----------AK----TGHL---D---LASHVFKNMSR--INIVTWGALISGFAQ----N----GLAGSTLELLMEMQS 271 (589)
Q Consensus 223 -----------~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----~----g~~~~a~~~~~~m~~ 271 (589)
.. .+.. + -+.+.+-.-.+ .+..+|..++..|.+ . .+...|+..+.+..+
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 11 1111 0 01111100000 235667777665544 1 123467777777665
Q ss_pred cCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 048179 272 CGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNV 348 (589)
Q Consensus 272 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 348 (589)
. ..+...+...+......|++.-+...+-......+....+|..+.-.+.+..+++.|...|..... .|...|-.
T Consensus 812 L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 812 L--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred H--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 4 344444444455555556665555555444455566666777777777777777777777776654 23445544
Q ss_pred HHHHHHhcCCHHHHHHHHHHH--HH--cC--------------------------------------------CCCCHHH
Q 048179 349 IIASYGIHGHGEEALSLFLQM--IE--TM--------------------------------------------VKPDHST 380 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m--~~--~~--------------------------------------------~~p~~~t 380 (589)
........|+.-++..+|..- .. .| .+-+.+.
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fA 969 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFA 969 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHH
Confidence 444444445544444444431 10 11 1222334
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYA----CMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGC 456 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 456 (589)
|...+....+.+.+..|.....+...-...+-+...|+ .+.+.+...|.++.|..-+.....+.|..+..+-+..
T Consensus 970 y~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l- 1048 (1238)
T KOG1127|consen 970 YAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL- 1048 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-
Confidence 44444444444444444444433322111112222333 2334444555555555444443333333333222222
Q ss_pred HhcCCchHHHHHHHHHhccCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDDLG---IHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.-.|+++++.+.|++++.+..++.. ....++......+.-+.|...+-+...
T Consensus 1049 Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1049 FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3467889999999999987654433 334455556667777778776555543
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=2.1e-07 Score=79.60 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLS 386 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~ 386 (589)
+..++..+...|.+.|+.+.|.+-|++..+ .+-...|....-+|..|++++|...|++....-.-|. ..||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 333444445555555555555555555432 2334445555555555666666666665554322222 235555555
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchH
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~ 464 (589)
+..+.|+.+.|..+|++..+. .+-.......+.+.....|++-.|..+++.... .++..++...+..-...||.+.
T Consensus 148 Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 555666666666666665542 112244455555666666666666666655422 2444455555555555666665
Q ss_pred HHHHHHHHhccCCCCc
Q 048179 465 GEKVAKKVLKLNPDDL 480 (589)
Q Consensus 465 a~~~~~~~~~~~p~~~ 480 (589)
+-+.-.++.+..|.+.
T Consensus 226 a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 226 AQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHHhCCCcH
Confidence 5555555555555443
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-07 Score=89.75 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=80.0
Q ss_pred HHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHH
Q 048179 421 VDLLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEE 498 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 498 (589)
...+.+.|++..|++.|.++.. .| |...|.....+|.+.|++..|..-.+..++++|+....|..=+.++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999743 35 677888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 048179 499 VAGVRKTMRKSG 510 (589)
Q Consensus 499 a~~~~~~m~~~g 510 (589)
|.+.|++..+..
T Consensus 445 Aleay~eale~d 456 (539)
T KOG0548|consen 445 ALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHhcC
Confidence 999999887644
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=1.2e-06 Score=86.25 Aligned_cols=294 Identities=11% Similarity=-0.011 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeh---HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHH
Q 048179 214 VQTSLVDMYAKTGHLDLASHVFKNMSR---INIVT---WGALISGFAQNGLAGSTLELLMEMQSCGFEPDSV-SLVSALL 286 (589)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~ 286 (589)
.+..+...+...|+.+.+.+.+....+ .+... .......+...|++++|...+++..+. .|+.. .+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hH
Confidence 334444444445555554444443321 12111 112233455677777777777777665 33332 2221 11
Q ss_pred HHh----ccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCH
Q 048179 287 ACA----QIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHG 359 (589)
Q Consensus 287 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 359 (589)
.+. ..+....+.+.........+........+...+...|++++|...+++..+ .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 111 223333343333331133333344555666778888888888888888764 3456677788888888999
Q ss_pred HHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH-H--HHHHHHHHcCCHHHH
Q 048179 360 EEALSLFLQMIETMV-KPDH--STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHY-A--CMVDLLARAGEVEEA 433 (589)
Q Consensus 360 ~~A~~~~~~m~~~~~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A 433 (589)
++|...+++...... .|+. ..+..+...+...|++++|..+++.+.......+..... + .+...+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999998888776432 1232 235567777888899999999998875321111111111 1 223333444433333
Q ss_pred HHH--H-HhcCCC-CC---hhHHHHHHHHHHhcCCchHHHHHHHHHhccCC---------CCchhHHHHHHHHHhCCChH
Q 048179 434 LKI--V-DSMSTE-PG---LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP---------DDLGIHALVSNFFAMEQKWE 497 (589)
Q Consensus 434 ~~~--~-~~~~~~-p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~ 497 (589)
.++ + ...... |. .........++...|+.+.|...++.+....- .........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 332 1 111111 11 12223455667888999999999988764321 13456677888899999999
Q ss_pred HHHHHHHHHHhCC
Q 048179 498 EVAGVRKTMRKSG 510 (589)
Q Consensus 498 ~a~~~~~~m~~~g 510 (589)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887644
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=9.8e-06 Score=90.59 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=116.2
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHH
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQS-------RD----LISWNVIIASYGIHGHGEEALSLFLQMIETM--VKPD--HST 380 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~--~~t 380 (589)
..+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3445555666677666666554432 11 1223344455666788888888777765421 1121 223
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH-----HHHHHHHHHcCCHHHHHHHHHhcCCC--CCh----hHH
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHY-----ACMVDLLARAGEVEEALKIVDSMSTE--PGL----AVW 449 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~ 449 (589)
+..+.......|++++|...++.+............+ ......+...|+.+.|.+++...... ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445556677888888888887775421111111111 11224445678888888888775431 111 113
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccC------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 450 VALLSGCHNHKKFSIGEKVAKKVLKLN------PDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 450 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
..+..++...|++++|...++++++.. +.....+..++.+|.+.|+.++|...+.++.+..
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 455666778888889988888887642 1233467778888889999999988888887643
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=8.9e-08 Score=89.38 Aligned_cols=247 Identities=12% Similarity=0.024 Sum_probs=110.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC----CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchh
Q 048179 220 DMYAKTGHLDLASHVFKNMSRI----NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLK 295 (589)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 295 (589)
.-++-.|++..+..-.+ .... +.....-+.+++...|+++.++ .++.... .|....+..+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455677777775444 2221 1223444566777777766543 3333332 555554444444443333333
Q ss_pred hHHHHHHHHh-hcCC-CChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048179 296 LGKSIHGYTV-RRFD-FNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETM 373 (589)
Q Consensus 296 ~a~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 373 (589)
.+..-+.... .... .+..+......++...|++++|++++... .+.......+..|.+.+|++.|.+.++.|.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 3332222222 2111 12222222233344455555555555443 23334444445555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC--CChhHHHH
Q 048179 374 VKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTE--PGLAVWVA 451 (589)
Q Consensus 374 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ 451 (589)
..|. +...+..++ +..+.-.+.+.+|..+|+++..+ +++.+++.
T Consensus 161 -~eD~-~l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng 206 (290)
T PF04733_consen 161 -DEDS-ILTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNG 206 (290)
T ss_dssp -SCCH-HHHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHH
T ss_pred -CCcH-HHHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 2221 222222221 12221222345555555554322 34445555
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCCh-HHHHHHHHHHHh
Q 048179 452 LLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKW-EEVAGVRKTMRK 508 (589)
Q Consensus 452 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 508 (589)
+..++...|++++|+.+++++++.+|+++.+...++.+....|+. +.+.+++.+++.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555566666666666666666666666666666666666666666 445555555554
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=9.4e-08 Score=89.23 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccC
Q 048179 214 VQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEP-DSVSLVSALLACAQIG 292 (589)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 292 (589)
....+.++|...|+.+.+..-...-..|.......+...+...++-+.++.-+++.......+ +..........+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 344455666667776655544443334444444444433333344455555555544333232 2222333334456667
Q ss_pred chhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHH----HhcCCHHHHHHHHH
Q 048179 293 FLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDL-ISWNVIIASY----GIHGHGEEALSLFL 367 (589)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~----~~~g~~~~A~~~~~ 367 (589)
+++.|.++.... .+.......+.+|.+.++++.|.+.++.|.+-+. .+...+..++ .-.+.+.+|..+|+
T Consensus 117 ~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 117 DYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 777766544321 3556667788999999999999999999976321 2222222222 22234666777776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048179 368 QMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 368 ~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 405 (589)
++.+. ..++..+.+.+..++...|++++|.+++.+..
T Consensus 192 El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 192 ELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 65443 34555566666666666666666666655544
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=1.6e-06 Score=88.96 Aligned_cols=460 Identities=12% Similarity=0.045 Sum_probs=273.9
Q ss_pred hHHHHHHhccCCCCC---cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHH
Q 048179 26 IVSARKLFEELPLRG---VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKA 102 (589)
Q Consensus 26 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 102 (589)
...|...|=+..+.| ...|..|...|...-+...|.+.|....+.+ ..|..........+++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 444444443333333 3468888888877778888888888887765 336677778888888888888888873222
Q ss_pred HHhCC-CCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh
Q 048179 103 VELGY-GNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEV 178 (589)
Q Consensus 103 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 178 (589)
-+... ..-..-|..+.-.|...+++..|..-|+.... .|...|..+..+|.+.|++..|+++|.+.... .|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s- 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS- 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-
Confidence 21110 00111222244456667888888888887765 36778888999999999999999999887664 4543
Q ss_pred hHHHHH--HHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHH-------HhcCCHHHHHHHHhhcCC---------
Q 048179 179 VMMGLI--QACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMY-------AKTGHLDLASHVFKNMSR--------- 240 (589)
Q Consensus 179 t~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~--------- 240 (589)
+|.... ..-+..|.+.++...+..++..- ..-....+.|...+ .-.|-..+|.+.|++-.+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 333222 22356788888888888776532 11112222333333 333444445555544321
Q ss_pred --CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCch---h---hHHHHHHHHhhcCCCCh
Q 048179 241 --INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFL---K---LGKSIHGYTVRRFDFNL 312 (589)
Q Consensus 241 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~ 312 (589)
.+...|-.+ ..|..+|....- . .|+......+..-....+.. + .|-..+... .....++
T Consensus 709 ~~~~~~~Wi~a----------sdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h-lsl~~~~ 775 (1238)
T KOG1127|consen 709 LQSDRLQWIVA----------SDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH-LSLAIHM 775 (1238)
T ss_pred hhhhHHHHHHH----------hHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH-HHHhhcc
Confidence 112222222 223333433331 1 23322222222212222222 1 111111111 1112224
Q ss_pred hHHHHHHHHhHh----cC----CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048179 313 VLGTSVIDMYSK----CG----VPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTF 381 (589)
Q Consensus 313 ~~~~~l~~~~~~----~g----~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 381 (589)
..|..|+..|.+ +| +...|...+.+..+ .+...||++.-. ...|++.-|.-.|-+-.... +....+|
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W 853 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQW 853 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhhe
Confidence 444444443333 22 22356777766543 677888887655 55577777777776655442 3456688
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-----CC--CCChhHHHHHHH
Q 048179 382 ASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-----ST--EPGLAVWVALLS 454 (589)
Q Consensus 382 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~p~~~~~~~l~~ 454 (589)
..+.-.|....+++.|...|...+. -.+.+...|..........|+.-++..+|..- .. -|+..-|.+-..
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 8888888999999999999999874 33444667776666777888888888888762 11 266666666555
Q ss_pred HHHhcCCchHHHHH----------HHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 455 GCHNHKKFSIGEKV----------AKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 455 ~~~~~~~~~~a~~~----------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
-...+|++++-+.. +++.++-.|+...+|...+....+.+.+.+|.+...+..
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56667766655444 445556679999999999999999999999888777654
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=7.9e-06 Score=81.22 Aligned_cols=261 Identities=16% Similarity=0.177 Sum_probs=155.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCee--hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhh
Q 048179 219 VDMYAKTGHLDLASHVFKNMSRINIV--TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKL 296 (589)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 296 (589)
+.+.....+|.+|..+++.+.+.++. -|..+...|...|+++.|.++|.+.- .+.-.+..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34445566677777777666654432 24455566666677777766664421 23445556666666666
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048179 297 GKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP 376 (589)
Q Consensus 297 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 376 (589)
|..+-... .+-+.....|-+-..-.-+.|++.+|.++|-.+..|+. .|..|-++|..+..+++..+- .|
T Consensus 810 a~kla~e~-~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~ 878 (1636)
T KOG3616|consen 810 AFKLAEEC-HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HG 878 (1636)
T ss_pred HHHHHHHh-cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Ch
Confidence 65543322 23333444455555556677888888888877777764 356777888888877776652 33
Q ss_pred C--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC----CChhHHH
Q 048179 377 D--HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTE----PGLAVWV 450 (589)
Q Consensus 377 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~ 450 (589)
+ ..|...+..-+...|+...|...|-+.. -|.+-+++|...+.|++|.++-+.-.-. .-...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 3 3466666777777788888877766553 2556677777777788777776543211 0111221
Q ss_pred H------HHHHHHhcC-------------CchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 451 A------LLSGCHNHK-------------KFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 451 ~------l~~~~~~~~-------------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
- ....+.++| -++-|..+.+-..+ ...+..+..++..+...|++++|.+-+-+..+.+.
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 1 111223333 34444444333322 33556788888888999999999887777765443
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2e-06 Score=82.63 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=116.9
Q ss_pred HHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHH
Q 048179 318 VIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHS-TFASLLSALSHSGLVEE 396 (589)
Q Consensus 318 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~a~~~~g~~~~ 396 (589)
+..+|.+.++++.|...|.+...+... -....+....++++.......- +.|+.. -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445777888899999988875531111 0111223334455544444332 334331 22233667888999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 397 GRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 397 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
|...|.+++.. .+.|...|....-+|.+.|.+..|++-.+... ..|+ ...|.--+.++....+++.|.+.|++.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999874 35568899999999999999999998877653 3444 44566666677778899999999999999
Q ss_pred cCCCCchhHHHHHHHHHhC
Q 048179 475 LNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~ 493 (589)
.+|++......+..++..+
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999988888887777653
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=8.4e-05 Score=76.83 Aligned_cols=218 Identities=10% Similarity=0.139 Sum_probs=129.7
Q ss_pred hHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHH
Q 048179 14 GRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLK 93 (589)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 93 (589)
+..+.+|+.+|.++++.-...+... ..-|-.+|+...+ -+++.+.++...|.+... ...-++.+...+...+...
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGy--TPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGY--TPDYMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCC--CccHHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhh
Confidence 4555666666666666555544321 2246667777766 678888888887776432 1222233333332222222
Q ss_pred HHH-------------------HHHHHHHHhCCC----------CChhhHHHHHHHHHhCCChHHHHHHHHhcCC--C--
Q 048179 94 MGE-------------------EIWRKAVELGYG----------NDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR--K-- 140 (589)
Q Consensus 94 ~a~-------------------~~~~~~~~~g~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-- 140 (589)
.+. ++++.-...++. -+..-+..+...|.+.|-...|++.+..+.+ +
T Consensus 560 q~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~v 639 (1666)
T KOG0985|consen 560 QCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVV 639 (1666)
T ss_pred hhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHH
Confidence 222 222222222110 0112245667888899999999988877754 1
Q ss_pred ---CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHH-----------h
Q 048179 141 ---DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIR-----------R 206 (589)
Q Consensus 141 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~ 206 (589)
+...-..++. |.-.-.+++++++++.|...+++.|..+...+..-|...=-.+...++|+.... .
T Consensus 640 Vhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSiv 718 (1666)
T KOG0985|consen 640 VHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIV 718 (1666)
T ss_pred HHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHh
Confidence 1112222333 344456789999999999988888887777766666554444455555554332 1
Q ss_pred cCCCchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048179 207 HLNLDVKVQTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
++..|+.+.--.|.+.++.|++.+.+++.++
T Consensus 719 n~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 719 NFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred ccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 3456777788889999999999999888765
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.2e-05 Score=75.40 Aligned_cols=408 Identities=13% Similarity=0.024 Sum_probs=242.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchH--HHHHHHHHhCCCccH
Q 048179 83 LKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCW--SSMINGLVFNGQPRE 160 (589)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~ 160 (589)
+.-+...+++++|.+...+++..+ +.+...+..=+-+....+++++|+.+.+.-........ -.=..+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 445667789999999999998876 55677777777788899999999977665543211111 122334457899999
Q ss_pred HHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048179 161 AVDAYKRMKKEGIDADE-VVMMGLIQACADLGDSRFGLSVHGYSIRRHLNL-DVKVQTSLVDMYAKTGHLDLASHVFKNM 238 (589)
Q Consensus 161 A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 238 (589)
|+..++ |..++. .+...-...|-+.+++++|..++.++.+.+.+. +...-..++..-. .-.+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhc
Confidence 999988 334433 356666677889999999999999999887532 2322223322211 11111 34444
Q ss_pred CCCCeehHHHH---HHHHHhCCChhHHHHHHHHHHhcC-------CCCCH-------HHHHHHHHHHhccCchhhHHHHH
Q 048179 239 SRINIVTWGAL---ISGFAQNGLAGSTLELLMEMQSCG-------FEPDS-------VSLVSALLACAQIGFLKLGKSIH 301 (589)
Q Consensus 239 ~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~ 301 (589)
+.....+|..+ ...+...|++.+|++++....+.+ -..+. ..-..+.-.+-..|+.+++..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44333344443 456778999999999998883211 01111 11223444567789999999999
Q ss_pred HHHhhcCCCChhH----HHHHHHHhHhcCCHH-HHHHHHHhcCCCChhH--------------HH-HHHHHHHhcCCHHH
Q 048179 302 GYTVRRFDFNLVL----GTSVIDMYSKCGVPS-CARALFDQMQSRDLIS--------------WN-VIIASYGIHGHGEE 361 (589)
Q Consensus 302 ~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~--------------~~-~li~~~~~~g~~~~ 361 (589)
.......++|... .|.|+.+-.-..-++ .++..++......... .| .++..|. +..+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 9998555555422 244443322211111 2333333332211111 11 1222221 22233
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHH
Q 048179 362 ALSLFLQMIETMVKPDHSTFASLLSALSH--SGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVD 438 (589)
Q Consensus 362 A~~~~~~m~~~~~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (589)
+.++..... +..|. ..+..++..+.. ......+..++..... +.+.+ ..+.-.++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 326 VRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333332211 12232 344455544432 2246777777777765 33333 4456677788899999999999998
Q ss_pred --------hcCC-CCChhHHHHHHHHHHhcCCchHHHHHHHHHhcc----CCC---CchhHHHHHHHHHhCCChHHHHHH
Q 048179 439 --------SMST-EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKL----NPD---DLGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 439 --------~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
.+.. .-.+.+..++..-+.+-++.+-|..++.+++.- .+. -...+..++..-.+.|+-++|..+
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 3322 233445556666677888888888888888742 222 223445556666778999999999
Q ss_pred HHHHHh
Q 048179 503 RKTMRK 508 (589)
Q Consensus 503 ~~~m~~ 508 (589)
++++.+
T Consensus 481 leel~k 486 (652)
T KOG2376|consen 481 LEELVK 486 (652)
T ss_pred HHHHHH
Confidence 999876
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.4e-06 Score=77.26 Aligned_cols=412 Identities=11% Similarity=0.040 Sum_probs=207.8
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVK 123 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 123 (589)
+++.+..+.+..++++|++++..-.++.. .+....+.+..+|-...++..|...++++-..- |...-|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY------ 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLY------ 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHH------
Confidence 45555555666666666666666555531 144444445555555556666666666654432 222222110
Q ss_pred CCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH--HccCCcHHHHHHHH
Q 048179 124 CGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQAC--ADLGDSRFGLSVHG 201 (589)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~ 201 (589)
-...+.+.+.+.+|+++...|.+. |+...-..-+.+. -+.+++..+..+.+
T Consensus 84 ------------------------~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 84 ------------------------QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred ------------------------HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 012223344444444444444321 1111111111111 12344444444444
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 048179 202 YSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR----INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD 277 (589)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 277 (589)
+.... .+..+.+.......+.|+++.|.+-|+...+ .....||.-+. ..+.|+++.|++...++++.|++..
T Consensus 137 Qlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 137 QLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred hccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 33211 1333444445555677888888888887765 23456665444 4567888999999999988876532
Q ss_pred HHHHH-HHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CChhHHHHHHH
Q 048179 278 SVSLV-SALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----RDLISWNVIIA 351 (589)
Q Consensus 278 ~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~ 351 (589)
+..=. ....+ .....+.....++... -+..+|.-...+.+.|+.+.|.+.+..|+. -|++|...+.-
T Consensus 213 PElgIGm~teg-iDvrsvgNt~~lh~Sa------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 213 PELGIGMTTEG-IDVRSVGNTLVLHQSA------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred CccCccceecc-CchhcccchHHHHHHH------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 21000 00000 0000000111111111 112234445567789999999999999984 36666655432
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-HcCCH
Q 048179 352 SYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLA-RAGEV 430 (589)
Q Consensus 352 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~ 430 (589)
. -..+++.+..+-+.-+.+... -...||..++-.|++..-++.|-.++-+-....-.-.+...|+ |++++. -.-..
T Consensus 286 ~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~p 362 (459)
T KOG4340|consen 286 M-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAP 362 (459)
T ss_pred h-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCH
Confidence 2 234555566665666665543 3356999999999999989888877654321100001223333 334433 34456
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH-HHhcCCchH----HHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 431 EEALKIVDSMSTEPGLAVWVALLSG-CHNHKKFSI----GEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 431 ~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
++|.+-++.+...-....-..-+.. -.++.+-++ +.+-+++.+++- -......+++|.+..++..+.+.|..
T Consensus 363 Eea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~ 439 (459)
T KOG4340|consen 363 EEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRK 439 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHH
Confidence 6666655554211000111111111 112222222 233344444432 23566778899999999999999986
Q ss_pred HHh
Q 048179 506 MRK 508 (589)
Q Consensus 506 m~~ 508 (589)
-.+
T Consensus 440 Sve 442 (459)
T KOG4340|consen 440 SVE 442 (459)
T ss_pred HHh
Confidence 554
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=5.5e-07 Score=79.37 Aligned_cols=148 Identities=9% Similarity=0.105 Sum_probs=114.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 350 IASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
+..|...|+++......+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3467788887776444322211 11 012235677888888888776 345668899999999999999
Q ss_pred HHHHHHHHHhcC-CCC-ChhHHHHHHHH-HHhcCC--chHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHH
Q 048179 430 VEEALKIVDSMS-TEP-GLAVWVALLSG-CHNHKK--FSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 430 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 504 (589)
+++|...|++.. ..| +...+..+..+ +...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999873 345 56677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 048179 505 TMRKSGM 511 (589)
Q Consensus 505 ~m~~~g~ 511 (589)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987443
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.1e-05 Score=81.35 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=151.0
Q ss_pred CCcchHhHHHH--hhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHC-C--------CCCCc
Q 048179 8 AYGNSVGRIIA--LYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKE-D--------VRPDS 76 (589)
Q Consensus 8 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~p~~ 76 (589)
.|..+-.++++ +|.--|+.+.|.+-.+.+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35556666664 4677799998888777654 3457999999999988888887777665431 1 1222
Q ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCC-CcchHHHHHHHHHhC
Q 048179 77 STFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRK-DLVCWSSMINGLVFN 155 (589)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 155 (589)
.+=.-+.-.....|.+++|+.++.+..+. ..|=..|...|.+++|.++-+.-..- =..||..-...+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 33333333456788999999999987765 23556677889999998876544321 123555556666667
Q ss_pred CCccHHHHHHHHHH----------HCC---------CCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHH
Q 048179 156 GQPREAVDAYKRMK----------KEG---------IDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQT 216 (589)
Q Consensus 156 g~~~~A~~~~~~m~----------~~~---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (589)
++.+.|++.|++-. ... -.-|...|.-...-.-..|+.+.|..++..+.+ |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 77888877776431 111 012333333333444455666666666554432 33
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 048179 217 SLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQ 270 (589)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 270 (589)
+++...|-.|+.++|-++-++- .|..+...+...|-..|++.+|...|.+.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4455555566666666665542 355566677888888888888888887765
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=6.1e-07 Score=94.97 Aligned_cols=208 Identities=15% Similarity=0.131 Sum_probs=175.3
Q ss_pred HHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 300 IHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--------RDLISWNVIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
=|+......|.+...|-..|......++++.|++++++... .-...|-++++.....|.-+...++|+++.+
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34455566777888899999999999999999999998864 1345799999988888988999999999987
Q ss_pred cCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC---h
Q 048179 372 TMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPG---L 446 (589)
Q Consensus 372 ~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~ 446 (589)
.. | ...|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++. .-|. .
T Consensus 1526 yc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1526 YC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred hc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 52 3 34688899999999999999999999999776 567789999999999999999999998863 2233 3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
....-.+..-.++||.++++.+|+..+.-.|.....|..+++.-.++|..+.++.+|++....++.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 344455556789999999999999999999999999999999999999999999999999987653
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=7.3e-07 Score=82.04 Aligned_cols=182 Identities=10% Similarity=-0.031 Sum_probs=115.7
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CC-h---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQS--RD-L---ISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH--STF 381 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~ 381 (589)
.....+..++..+.+.|+++.|...|+++.. |+ . .+|..+..++...|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455566667777777777777777776653 22 1 35566667777777777777777777764321111 134
Q ss_pred HHHHHHHhcC--------CcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHH
Q 048179 382 ASLLSALSHS--------GLVEEGRYWFDLMVSKYKIQPTE-KHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVAL 452 (589)
Q Consensus 382 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 452 (589)
..+..++... |++++|.+.|+.+...+ |+. ..+..+.... ...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMD----YLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHH----HHHHHH-----------HHHHHHH
Confidence 4444445443 56777777777776532 332 2222211110 000000 0011245
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDD---LGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566889999999999999999987764 478999999999999999999999988754
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=1.9e-05 Score=78.54 Aligned_cols=190 Identities=15% Similarity=0.167 Sum_probs=100.5
Q ss_pred hccCchhhHHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 048179 289 AQIGFLKLGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFL 367 (589)
Q Consensus 289 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 367 (589)
.....+..|..+.+.+. +.. -..-|..+.+-|+..|+++.|.++|.+.- .++-.|..|.+.|+++.|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 33444555555554443 111 11223445566666666666666665443 34445566666666666666554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChh
Q 048179 368 QMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLA 447 (589)
Q Consensus 368 ~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 447 (589)
+. .|.......|..-..-.-+.|.+.+|.+++-.+.. |+ ..|.+|-+.|..++.+++.++-....-..
T Consensus 816 e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 816 EC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred Hh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----ch-----HHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 32 22222233343333445556666666655543321 32 23456666666666666666654322234
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
+...+..-+-..|+...|+.-|-++-+ +..-.++|...+.|++|.++-+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 455555556666777776666554422 44455667777777777666544
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=2.4e-05 Score=77.15 Aligned_cols=298 Identities=15% Similarity=0.064 Sum_probs=149.3
Q ss_pred chHHHHHHHHHhCCCccHHHHHHHHHHHCCC-CCChhhH-HHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHH---
Q 048179 143 VCWSSMINGLVFNGQPREAVDAYKRMKKEGI-DADEVVM-MGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTS--- 217 (589)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 217 (589)
..|..+...+...|+.+.+.+.+.+..+... .++.... ......+...|+++.+..+++...+..+ .+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhHH
Confidence 3555666666677777777666666544311 1222111 1112234556777777777777666532 23323221
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCch
Q 048179 218 LVDMYAKTGHLDLASHVFKNMSRINI---VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFL 294 (589)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 294 (589)
+.......+..+.+.+.++.....+. .....+...+...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---------------------- 143 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---------------------- 143 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------------
Confidence 11111123344444444443222111 12223334555566666666666666554
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CCh--hHHHHHHHHHHhcCCHHHHHHHHH
Q 048179 295 KLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----RDL--ISWNVIIASYGIHGHGEEALSLFL 367 (589)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~~~~A~~~~~ 367 (589)
.+.+...+..+...|...|++++|...+++..+ ++. ..|..+...+...|++++|..+++
T Consensus 144 -------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 144 -------------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred -------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 233344445666666777777777777766543 111 234456667777888888888887
Q ss_pred HHHHcCC-CCCHHHH-H--HHHHHHhcCCcHHHHHHH---HHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 368 QMIETMV-KPDHSTF-A--SLLSALSHSGLVEEGRYW---FDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 368 ~m~~~~~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
+...... .+..... . .++.-+...|..+.+.+. ....................+.++...|+.++|..+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7654322 1111111 1 223333334433332222 1111110000011112224666778888899998888776
Q ss_pred CC--CC---C------hhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 441 ST--EP---G------LAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 441 ~~--~p---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
.. +. . ........-++...|+.+.|.+.+..++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 32 11 1 1111222234678899999999998887643
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=6e-06 Score=73.31 Aligned_cols=300 Identities=13% Similarity=0.077 Sum_probs=159.1
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeehHHH-HHHHHHhC
Q 048179 180 MMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR--INIVTWGA-LISGFAQN 256 (589)
Q Consensus 180 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 256 (589)
+.+++..+.+..++..+++++....++. +.+....+.|..+|.+..++..|-..++++.+ |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4445555555566666666666555443 22555666777888888888888888888765 22222221 23456678
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHH
Q 048179 257 GLAGSTLELLMEMQSCGFEPDSVSLVSALLA--CAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARAL 334 (589)
Q Consensus 257 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 334 (589)
+.+..|+.+...|.+. |+...-..-+++ .-..+++..++.+.+.... +.+..+.+...-...+.|+.+.|.+-
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHH
Confidence 8888888888887753 322111111111 1223333333333322221 01122222223333444555555555
Q ss_pred HHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH---------HH
Q 048179 335 FDQMQS----RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRY---------WF 401 (589)
Q Consensus 335 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~---------~~ 401 (589)
|+...+ .....||..+. ..+.|+++.|++...++++.|++--+.. . -|...++.. +.
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCchhcccchHHHH
Confidence 544433 22233433322 2233444555555555555444311110 0 000000000 00
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 402 DLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST----EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 402 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
... =...++.-...+.+.|+++.|.+.+..|+. +.|++|...+.-. -..+++..+.+-+.-+++++|
T Consensus 237 ~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 237 QSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 000 011233333456788999999999999964 3577777665432 234566667777777888899
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHH
Q 048179 478 DDLGIHALVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 478 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 504 (589)
-.+.++..+.-+|++..-++-|..++-
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 888899999999999988888887764
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=2.7e-07 Score=76.91 Aligned_cols=92 Identities=11% Similarity=-0.052 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC
Q 048179 417 YACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ 494 (589)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 494 (589)
+..+...+...|++++|...|+... .. .+...|..+..++...|++++|+..++++++++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344555555566666665555542 12 244555555555666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHh
Q 048179 495 KWEEVAGVRKTMRK 508 (589)
Q Consensus 495 ~~~~a~~~~~~m~~ 508 (589)
++++|...++...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=3.5e-05 Score=70.01 Aligned_cols=312 Identities=14% Similarity=0.135 Sum_probs=197.8
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHH---HHHHHccCCcHHHHHHHHHHHHhcCCCchH-HHHHHHH
Q 048179 145 WSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGL---IQACADLGDSRFGLSVHGYSIRRHLNLDVK-VQTSLVD 220 (589)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 220 (589)
.--+-..+...|++.+|+..|...++. |+..|..+ ...|...|...-|..-+..+++. +||-. ...--..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 344667778888999999988888764 33334333 44566777777777766666654 34421 1112233
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 048179 221 MYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSI 300 (589)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 300 (589)
.+.+.|.++.|..=|+.+.+.++.- +....++.+.-..++- ......+..+...|+...++..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHH
Confidence 4566777777777777666533210 0000111111101111 1122233344556777777777
Q ss_pred HHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048179 301 HGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQ---SRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD 377 (589)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 377 (589)
...+..-.+.+..++..-..+|...|++..|+.-+.... ..+....--+-..+...|+.+.++...++-++ +.||
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 777777777778888888888888888888887666554 35666666666777788888888877777665 4566
Q ss_pred HH-H---HHHH---------HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHh
Q 048179 378 HS-T---FASL---------LSALSHSGLVEEGRYWFDLMVSKYKIQPT-----EKHYACMVDLLARAGEVEEALKIVDS 439 (589)
Q Consensus 378 ~~-t---~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (589)
.. + |..| .......+.|.++.+..+...+. .|. ...+..+-.++...|++.+|++...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 43 1 2111 11234456777777777766543 343 23344566777888999999999888
Q ss_pred cC-CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHH
Q 048179 440 MS-TEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHA 484 (589)
Q Consensus 440 ~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 484 (589)
.. ..|| +.++.--..+|.....++.|+.-|+++.+.+|+|..+-.
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 63 4565 778888888999999999999999999999998865443
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=0.00012 Score=74.23 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
..+..++..+.++|.+..|.+-|.+
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhh
Confidence 4677889999999999888776654
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=3.9e-07 Score=75.92 Aligned_cols=123 Identities=10% Similarity=0.003 Sum_probs=100.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-C
Q 048179 364 SLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-T 442 (589)
Q Consensus 364 ~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 442 (589)
.+|++.++. .|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355555543 4543 45567788899999999999999885 334458888999999999999999999999973 3
Q ss_pred CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 048179 443 EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM 492 (589)
Q Consensus 443 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 492 (589)
.| +...|..+..++...|++++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34 677899999999999999999999999999999999999888877554
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.71 E-value=0.00028 Score=68.28 Aligned_cols=409 Identities=11% Similarity=0.076 Sum_probs=196.9
Q ss_pred CCcchHhHHHHhhhcCCChHHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHH
Q 048179 8 AYGNSVGRIIALYGGKNDIVSARKLFEELPL--R-GVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALK 84 (589)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 84 (589)
-|+..|+.||.-+..+ .+++++..++++.. | ....|..-|..-.+..+++...++|.+-+..- .+...|..-|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 3678899999966665 89999999988763 2 35679999999999999999999998877653 34555655554
Q ss_pred HHhcc-CCHHH----HHHHHHHHH-HhCCCC-ChhhHHHHHHH---------HHhCCChHHHHHHHHhcCC-C--C----
Q 048179 85 ACVSL-MDLKM----GEEIWRKAV-ELGYGN-DVFVGSSMLNL---------YVKCGKMNEAMVAFEKMQR-K--D---- 141 (589)
Q Consensus 85 ~~~~~-~~~~~----a~~~~~~~~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~-~--~---- 141 (589)
--.+. +.... ..+.|+..+ +.|.++ +...|+..+.. |..+.+++..+++++++.. | |
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 33322 22222 234444433 445433 23345555543 3344567778888888874 2 1
Q ss_pred ---cchHHHHHHHH-------HhCCCccHHHHHHHHHHH--CCCCCChhhHHHHHHHHHccCCcHHH--HHHHHHHHHh-
Q 048179 142 ---LVCWSSMINGL-------VFNGQPREAVDAYKRMKK--EGIDADEVVMMGLIQACADLGDSRFG--LSVHGYSIRR- 206 (589)
Q Consensus 142 ---~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a--~~~~~~~~~~- 206 (589)
-..|..=|+.. -+...+-.|.++++++.. .|...+..+ .-..|-.++. .+++...++.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHHH
Confidence 11222111111 123345567777777643 343322222 0001111111 1112112211
Q ss_pred ---cCC-Cch--------HHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCC-------hhHHHHHH
Q 048179 207 ---HLN-LDV--------KVQTSLVDMYAK-TGHLDLASHVFKNMSRINIVTWGALISGFAQNGL-------AGSTLELL 266 (589)
Q Consensus 207 ---~~~-~~~--------~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~ 266 (589)
++. .+. .+|.-.+....- -.-|-++...+....+ .+...|+ .+++..++
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~-----------l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD-----------LLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH-----------HHHHhcccccchhhHHHHHHHH
Confidence 111 000 011100000000 0001111111111110 1111111 23444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcc---CchhhHHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--
Q 048179 267 MEMQSCGFEPDSVSLVSALLACAQI---GFLKLGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-- 340 (589)
Q Consensus 267 ~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 340 (589)
+.....-..-+..+|..+...--.. ...+....++..+. .....-..+|..+++.-.+..-+..|+.+|.++.+
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 4443322222333332222221111 12333444444444 11122223455566666666666777777766654
Q ss_pred ---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hh
Q 048179 341 ---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT--EK 415 (589)
Q Consensus 341 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 415 (589)
.++...++++.-||. ++..-|.++|+-=.+. ..-++.-....+.-+.+.++-..+..+|++.... ++.|+ ..
T Consensus 397 r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~ 473 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKE 473 (656)
T ss_pred CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHH
Confidence 245556666665544 4556666666653332 1122223334455556666666777777776665 55555 45
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
.|..+++-=..-|++..+.++-+++
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6777777666777777776666554
No 111
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1e-05 Score=76.64 Aligned_cols=225 Identities=9% Similarity=0.055 Sum_probs=143.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh
Q 048179 245 TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK 324 (589)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (589)
++..+-..+...++.++|+.+..++++. .|+..| +|+....++.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt---------------------------------aW~~R~~iL~~ 83 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYT---------------------------------VWHFRRLCLEA 83 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH---------------------------------HHHHHHHHHHH
Confidence 3444445556666777777777777664 444332 23333333334
Q ss_pred cC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 048179 325 CG-VPSCARALFDQMQS---RDLISWNVIIASYGIHGHG--EEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 325 ~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 398 (589)
.| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.+++++.+.. +-|..+|.....++.+.|++++++
T Consensus 84 L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 84 LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHH
Confidence 44 45667777666553 3344566554444455542 56777777777654 335667777777777778888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHc---CC----HHHHHHHHHh-cCCCC-ChhHHHHHHHHHHhc----CCchHH
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLLARA---GE----VEEALKIVDS-MSTEP-GLAVWVALLSGCHNH----KKFSIG 465 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~----~~~~~a 465 (589)
+.++.+.+. -+-+...|+....++.+. |. .++++++..+ +...| |..+|+.+...+... ++..+|
T Consensus 163 ~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~ 240 (320)
T PLN02789 163 EYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEV 240 (320)
T ss_pred HHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhH
Confidence 888888764 233455566555555444 22 2456666644 34445 677898888888773 455779
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhCC------------------ChHHHHHHHHHHH
Q 048179 466 EKVAKKVLKLNPDDLGIHALVSNFFAMEQ------------------KWEEVAGVRKTMR 507 (589)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 507 (589)
...+.+++..+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 241 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 241 SSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 89999999999999999999999998742 2366777777773
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=6.3e-07 Score=89.05 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=137.0
Q ss_pred cCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048179 307 RFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLS 386 (589)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 386 (589)
..+|-...-..+...+.+.|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -+||+..|..++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 345555556677777888888888888887754 577777788888877777777776665 3677777777666
Q ss_pred HHhcCCcHHHHHHHHHH----------------------------HHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 048179 387 ALSHSGLVEEGRYWFDL----------------------------MVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVD 438 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~----------------------------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (589)
..-...-+++|.++++. -.+-+ +.-..+|-.+.-+..+.++++.|.+.|.
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 55544445555544443 33211 1123455556666677778888888777
Q ss_pred hc-CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048179 439 SM-STEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKK 513 (589)
Q Consensus 439 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 513 (589)
.. ..+|| ...|+++-.+|.+.++-.+|...++++++.+-++...|.+...+..+.|.|++|.+.+.++.+...++
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 75 33554 56788888888888888888888888888777777788888788888888888888888877654433
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=3.9e-05 Score=85.85 Aligned_cols=158 Identities=11% Similarity=0.017 Sum_probs=82.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcC--CCCC--HHHHHHHHHHHhccCchhhHHHHHHHHh---hcCCCChh----HHHHH
Q 048179 250 ISGFAQNGLAGSTLELLMEMQSCG--FEPD--SVSLVSALLACAQIGFLKLGKSIHGYTV---RRFDFNLV----LGTSV 318 (589)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~----~~~~l 318 (589)
...+...|++++|...+.+..... ..+. ...+..+.......|+.+.|...+.... ........ .....
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 334444556666555555543311 0111 1222333344455556665555555443 11100000 00112
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDL-------ISWNVIIASYGIHGHGEEALSLFLQMIET----MVKPD-HSTFASLLS 386 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~ 386 (589)
+..+...|+.+.|...+.....+.. ..+..+..++...|++++|...+++.... |..++ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2344556777777777766553211 11334556677788888888888776643 32222 235566667
Q ss_pred HHhcCCcHHHHHHHHHHHHHh
Q 048179 387 ALSHSGLVEEGRYWFDLMVSK 407 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~ 407 (589)
++...|+.++|...+.++.+.
T Consensus 740 a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888888887764
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=2e-08 Score=59.37 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=30.9
Q ss_pred ccCCCCcchHhHHHHhhhcCCChHHHHHHhccCC
Q 048179 4 TNLSAYGNSVGRIIALYGGKNDIVSARKLFEELP 37 (589)
Q Consensus 4 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 37 (589)
+|+.||+++||.||+.|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999885
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.3e-06 Score=83.04 Aligned_cols=246 Identities=15% Similarity=0.088 Sum_probs=177.6
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHH
Q 048179 252 GFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCA 331 (589)
Q Consensus 252 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 331 (589)
-+.+.|+..+|.-.|+...... +-+...|..|....+..++-..|+..+.....-.+.+..+..+|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3567788888888887777653 334456666767777777777777777777777777888888888888888888888
Q ss_pred HHHHHhcCCCC-hhHHHHHH---------HHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 048179 332 RALFDQMQSRD-LISWNVII---------ASYGIHGHGEEALSLFLQMIE-TMVKPDHSTFASLLSALSHSGLVEEGRYW 400 (589)
Q Consensus 332 ~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 400 (589)
.+.|+.-.... ...|.... ..+..........++|-++.. .+..+|+.....|.-.|--.|.+++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887653200 00000000 111111223445555555544 44447777777777778889999999999
Q ss_pred HHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCCh-hHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 401 FDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSM-STEPGL-AVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 401 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
|+.+.. ++|+ ...|+.|.-.++...+.++|+..|++. ..+|+. .++..|.-+|...|.+++|...|-.++.+.+
T Consensus 453 f~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999985 4555 788999999999999999999999997 457874 4888999999999999999999999998765
Q ss_pred CC----------chhHHHHHHHHHhCCChHHHHH
Q 048179 478 DD----------LGIHALVSNFFAMEQKWEEVAG 501 (589)
Q Consensus 478 ~~----------~~~~~~l~~~~~~~g~~~~a~~ 501 (589)
.+ -.+|..|-.++...++.|-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 41 2467777777777777664444
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2.7e-06 Score=84.74 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=124.3
Q ss_pred HHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 048179 284 ALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEAL 363 (589)
Q Consensus 284 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 363 (589)
++..|...|+...|..+...... .+|++..|..+++......-+++|.++++....+--..| .....+.++++++.
T Consensus 430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~---~~~~~~~~~fs~~~ 505 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSL---ALLILSNKDFSEAD 505 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhh---ccccccchhHHHHH
Confidence 34444444444444444443333 445555555555554444445555555544332211111 11122357777887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-
Q 048179 364 SLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST- 442 (589)
Q Consensus 364 ~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 442 (589)
+.|+.-.+.. +....+|..+..+..+.+++..|.+.|..... .-+.+...|+.+-.+|.+.|+-.+|...+.+...
T Consensus 506 ~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 506 KHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 7777655542 33356788888888899999999999999985 4344488999999999999999999999998742
Q ss_pred -CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 443 -EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 443 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
.-+...|.+.+-...+.|.++.|++++.++..+..
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 24556788888888999999999999999987653
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=3e-06 Score=88.53 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048179 343 LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH-STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMV 421 (589)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 421 (589)
+..+-.+.....+.|++++|..+++...+. .||. .....+...+.+.+.+++|....++... .-+.+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 344444444445555555555555554442 3332 2334444444555555555555554443 1122234444444
Q ss_pred HHHHHcCCHHHHHHHHHhcCC-CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 422 DLLARAGEVEEALKIVDSMST-EPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
.++.+.|++++|.++|++... .|+ ..+|.++..++...|+.+.|...|+++++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 455555555555555555431 222 3444455555555555555555555555443
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=9.2e-07 Score=72.20 Aligned_cols=118 Identities=8% Similarity=0.064 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
.+..-.+...+...|++++|.++|+-.. ..| +..-|..|..+|...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4455567778889999999999999873 344 67789999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048179 492 MEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMR 554 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (589)
..|+.+.|.+.|+..+... ..+|+..++....+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887521 146777777777777766665
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=2.1e-06 Score=75.29 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC--CCCChhHHHHHHHHHHhc
Q 048179 382 ASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS--TEPGLAVWVALLSGCHNH 459 (589)
Q Consensus 382 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 459 (589)
..+-.++...|+-+....+...... ..+.+......++....+.|++.+|+..+++.. .+||...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4444555556666666666555432 223334455556677777777777777777652 245666777777777777
Q ss_pred CCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 460 KKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 460 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
|+++.|...+.+++++.|+++.+..+++..|.-.|+++.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777666543
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=9.6e-06 Score=71.51 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=118.8
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 398 (589)
+-.|...|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888877655554433221 01223567788888888887764 566788999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHH-HHcCC--HHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLL-ARAGE--VEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
..|+.+.+. .+.+...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999863 334578888888864 77787 599999999974 345 56788888889999999999999999999
Q ss_pred ccCCCCchhHH
Q 048179 474 KLNPDDLGIHA 484 (589)
Q Consensus 474 ~~~p~~~~~~~ 484 (589)
++.|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99987665543
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=9.6e-08 Score=56.48 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=25.2
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHhcC
Q 048179 106 GYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQ 138 (589)
Q Consensus 106 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 138 (589)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.1e-05 Score=70.78 Aligned_cols=156 Identities=9% Similarity=0.051 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048179 347 NVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR 426 (589)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 426 (589)
...-..+...|+-+....+....... .+-|.......+....+.|++.+|...|.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455666777777777766664432 123344455577888888999999999888886 667778889999999999
Q ss_pred cCCHHHHHHHHHhc-CCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHH
Q 048179 427 AGEVEEALKIVDSM-STE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 427 ~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 504 (589)
.|++++|..-|.+. ... .++...+.+...+.-.||++.|+.++..+....+.++.+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999998888776 233 4566788888888899999999999999888888888888889999999999998888765
Q ss_pred H
Q 048179 505 T 505 (589)
Q Consensus 505 ~ 505 (589)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=2.9e-05 Score=82.90 Aligned_cols=219 Identities=13% Similarity=0.130 Sum_probs=172.3
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhc-C---CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-eehHHHH
Q 048179 176 DEVVMMGLIQACADLGDSRFGLSVHGYSIRRH-L---NLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRI-N-IVTWGAL 249 (589)
Q Consensus 176 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 249 (589)
+...|-.-+......++.+.|+++.+++++.- + .--..+|.+++++-..-|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34556667777888889999999988887642 1 112357888888888888888889999998872 3 3578889
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCC--ChhHHHHHHHHhHhcCC
Q 048179 250 ISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDF--NLVLGTSVIDMYSKCGV 327 (589)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 327 (589)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|+.++..+....|. ...+..-.+.+-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999876 4556677888888889999989999999998865555 56666777888889999
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCcHH
Q 048179 328 PSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH--STFASLLSALSHSGLVE 395 (589)
Q Consensus 328 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~a~~~~g~~~ 395 (589)
.+.++.+|+.... .-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..=.+.|+-+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 9999999998765 24578999999999999999999999999999888754 34555554444445433
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.4e-05 Score=73.41 Aligned_cols=181 Identities=12% Similarity=0.041 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCCh---hHHHHHHHHhHhcCCHHHHHHHHHhcCC--CC-hh---HH
Q 048179 276 PDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNL---VLGTSVIDMYSKCGVPSCARALFDQMQS--RD-LI---SW 346 (589)
Q Consensus 276 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~ 346 (589)
.....+......+...|+++.|...++.+....+.++ ..+..+..+|.+.|++++|...|+++.+ |+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456677788889999999999999999886555544 4668889999999999999999999864 32 22 45
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH
Q 048179 347 NVIIASYGIH--------GHGEEALSLFLQMIETMVKPDHS-TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHY 417 (589)
Q Consensus 347 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 417 (589)
..+..++... |++++|.+.|+++.+. .|+.. ....+..... . ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HHH
Confidence 5555666554 7789999999999876 34432 2221111100 0 00000 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCC-CC----ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 418 ACMVDLLARAGEVEEALKIVDSMST-EP----GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
..+...|.+.|++++|...+++... .| ....|..++.++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566788899999999998888632 23 246788899999999999999998888776555
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=2.5e-06 Score=70.71 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
......+...+...|++++|.+.++.... .| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45566677788888888888888887632 34 56677788888888899999999999998899999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 048179 492 MEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~~g 510 (589)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999998877643
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=0.0003 Score=67.59 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCH
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEV 430 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 430 (589)
+...|++++|...++.++.. .|| +.........+...++.++|.+.++.+.. ..|+ ....-.+..+|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 33445555555555555543 233 23333333445555555555555555553 2233 33344455555555555
Q ss_pred HHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 431 EEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 431 ~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+|+.+++.... +.|+..|..|..+|...|+..++... .+..|.-.|+|++|.......++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 555555555422 22444555555555555554444332 33345556666677666666665
Q ss_pred C
Q 048179 509 S 509 (589)
Q Consensus 509 ~ 509 (589)
+
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
No 127
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=3.5e-05 Score=73.11 Aligned_cols=190 Identities=12% Similarity=0.052 Sum_probs=139.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQSR---DLISWNVIIASYGIHG-HGEEALSLFLQMIETMVKPDHSTFASLLSALSHS 391 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~ 391 (589)
..+-..+...+..++|+.+.+++... +..+|+.-...+...| ++++++..++++.+... -+..+|..-...+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 34444556677888999999887753 4456776666667777 57999999999998753 3344565554445555
Q ss_pred Cc--HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-C-CChhHHHHHHHHHHhc---CCc--
Q 048179 392 GL--VEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-E-PGLAVWVALLSGCHNH---KKF-- 462 (589)
Q Consensus 392 g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~---~~~-- 462 (589)
|. .+++..+++.+.+. -+-+...|+....++.+.|+++++++.++++.. . .|..+|+.....+... |..
T Consensus 120 ~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 65 36788888888863 344578888888999999999999999999843 3 4677888887776554 223
Q ss_pred --hHHHHHHHHHhccCCCCchhHHHHHHHHHhC----CChHHHHHHHHHHHh
Q 048179 463 --SIGEKVAKKVLKLNPDDLGIHALVSNFFAME----QKWEEVAGVRKTMRK 508 (589)
Q Consensus 463 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 508 (589)
+.......++++.+|+|.++|..++.++... ++..+|.+.+.+..+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677788899999999999999999999883 455678777776554
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=7.4e-06 Score=79.15 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCH 457 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~ 457 (589)
....|+..+...+.++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++... .| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456677777888999999999998864 254 455588888888999999999888633 34 5556666666789
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
..++++.|..+++++.++.|++...|..|+.+|.+.|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999885
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=5.3e-05 Score=80.15 Aligned_cols=234 Identities=10% Similarity=0.029 Sum_probs=140.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-eehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSR--IN-IVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLA 287 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 287 (589)
+...+..|+..|...+++++|.++.+...+ |+ +..|-.+...+.+.++.+++..+ .+... .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~---------- 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQ---------- 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--ccc----------
Confidence 566777788888888888888888776544 32 33444444456666666555544 22221 111
Q ss_pred HhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 048179 288 CAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALS 364 (589)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 364 (589)
..++.....+...+. ....+..++..+..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+.. +.++|.+
T Consensus 96 ---~~~~~~ve~~~~~i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 96 ---NLKWAIVEHICDKIL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ---ccchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 112211111111111 1223344556777777777777777777777764 3556677777777777 7777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCC
Q 048179 365 LFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEP 444 (589)
Q Consensus 365 ~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 444 (589)
++.+.+.. +.....+..+.++|..+.. ..+.+...+..+.+..... .....
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~ 221 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTR 221 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccch
Confidence 77666543 4444566777777777765 2233333333333222211 11112
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM 492 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 492 (589)
-..++.-+-..|...++++.+..+++.+++.+|+|..+...++..|..
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 234455566678888999999999999999999999888888888773
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.40 E-value=0.0026 Score=61.90 Aligned_cols=439 Identities=13% Similarity=0.117 Sum_probs=240.2
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHH
Q 048179 38 LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSM 117 (589)
Q Consensus 38 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 117 (589)
+-|+.+|+.||+-+..+ .++++.+.++++... .+-....|..-+..-.+.++++..+.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 34788999999987666 889999999998754 23345567777888888889999999998887663 345566655
Q ss_pred HHHHHh-CCChHHH----HHHHHhcCC------CCcchHHHHHHHH---------HhCCCccHHHHHHHHHHHCCCCCCh
Q 048179 118 LNLYVK-CGKMNEA----MVAFEKMQR------KDLVCWSSMINGL---------VFNGQPREAVDAYKRMKKEGIDADE 177 (589)
Q Consensus 118 i~~~~~-~g~~~~A----~~~~~~~~~------~~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~~~p~~ 177 (589)
++---+ .|....+ .+.|+-..+ .+-..|+..+..+ ..+.+++...++|+++....+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~--- 169 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH--- 169 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc---
Confidence 543222 2333221 122222111 2233455554332 2233444555555555443111
Q ss_pred hhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC------CCe--------
Q 048179 178 VVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR------INI-------- 243 (589)
Q Consensus 178 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~-------- 243 (589)
+++ +++..........|..+-.-++. -+...+..|+++++++.. .+.
T Consensus 170 --------------nlE---kLW~DY~~fE~~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 170 --------------NLE---KLWKDYEAFEQEINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred --------------cHH---HHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 111 11111111100111111111111 122345555655555421 011
Q ss_pred -------ehHHHHHHHHHhCCCh--------hHHHHHHHH-HHhcCCCCCHHH-HHH----HHHHHhccCch-------h
Q 048179 244 -------VTWGALISGFAQNGLA--------GSTLELLME-MQSCGFEPDSVS-LVS----ALLACAQIGFL-------K 295 (589)
Q Consensus 244 -------~~~~~li~~~~~~g~~--------~~a~~~~~~-m~~~g~~p~~~~-~~~----ll~~~~~~~~~-------~ 295 (589)
..|-.+|.--..++.- ....-.+++ |.-.+..|+..- +.. .-+.+...|+. +
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 1244444322222111 011111221 122233333211 111 11122333333 3
Q ss_pred hHHHHHHHHh-hcCCCChhHHHHHHHHhHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 048179 296 LGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCG---VPSCARALFDQMQS----RDLISWNVIIASYGIHGHGEEALSLFL 367 (589)
Q Consensus 296 ~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 367 (589)
++..+++... .....+..+|..+.+---..- ..+.....+++... .-..+|-..+..-.+..-...|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 4445555544 222234444444433221111 13344444444432 233567777887777778899999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC---
Q 048179 368 QMIETMVKP-DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTE--- 443 (589)
Q Consensus 368 ~m~~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 443 (589)
+..+.+..+ +.....+++.-++ .++.+-|.++|+.-.+.++ .+..--.+.++-+.+.++-..|..+|++....
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 999998888 5667777777666 4899999999999887554 34455577889999999999999999997433
Q ss_pred C--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc----hhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 444 P--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL----GIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 444 p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
| ....|..++.--..-||...+.++-++....-|.+. ..-..+.+-|.=.+.+..-..-++.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 2 357899999999999999999999888876655211 1223345556666655544443333
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00026 Score=62.40 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=76.4
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cCCcH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALS----HSGLV 394 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~----~~g~~ 394 (589)
...|...|++++|.+...... +....-.=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++. ..+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 445566666666666665532 2222222233444555666666666666542 13345554444433 23445
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCc-hHHHHHHHH
Q 048179 395 EEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKF-SIGEKVAKK 471 (589)
Q Consensus 395 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~ 471 (589)
.+|.-+|+++.+ ..+|+..+.+.+..+....|++++|..+++.... ..++.++..++..-...|.. +-..+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 566666666654 3445555555555555555555555555555422 13444444444443344433 223344444
Q ss_pred HhccCCCCc
Q 048179 472 VLKLNPDDL 480 (589)
Q Consensus 472 ~~~~~p~~~ 480 (589)
+....|.++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 444445443
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=5e-05 Score=72.69 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=106.7
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC-hhHHHHHHHHHHhcCCchH
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPG-LAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~ 464 (589)
.....|.+++|+..++.+.. ..+.|+..+....+.+.+.++.++|.+.++++. ..|+ ...+-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567999999999999987 555668888889999999999999999999984 3576 6678888999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 465 GEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 465 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
|+.+++....-+|+++..|..|+.+|...|+..+|...+-++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877653
No 133
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.7e-05 Score=70.07 Aligned_cols=162 Identities=10% Similarity=0.075 Sum_probs=119.2
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH----
Q 048179 344 ISWNVI-IASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYA---- 418 (589)
Q Consensus 344 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---- 418 (589)
.+|..+ ..++...|++++|...--..++.. ..+......-..++...++.+.|...|++.. .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASM 244 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhh
Confidence 445444 345677899999988776666543 2222222222234556788999999999877 4445532211
Q ss_pred ---------HHHHHHHHcCCHHHHHHHHHhc-CCC-----CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhH
Q 048179 419 ---------CMVDLLARAGEVEEALKIVDSM-STE-----PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 419 ---------~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
-=..-..+.|.+.+|.+.|.+. ... |+...|.....+..+.|+.++|+.-.+.+++++|.-..+|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 1223456889999999999886 233 5566677777788899999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 484 ALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 484 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
..-++++...++|++|.+.+++..+.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988763
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=2e-05 Score=65.26 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-C
Q 048179 365 LFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-T 442 (589)
Q Consensus 365 ~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 442 (589)
.|++.... .|+ ......+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...+++.. .
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555543 443 345666777888899999999999998763 34467888889999999999999999998863 3
Q ss_pred CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhH
Q 048179 443 EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 443 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
.| +...+..+...+...|+++.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34 567788888889999999999999999999999877543
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00013 Score=63.78 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCCchHHHHH
Q 048179 391 SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS--TEPGLAVWVALLSGCHNHKKFSIGEKV 468 (589)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 468 (589)
.|.+++|.++++.+.++ -+.|..++---+-+.-..|+.-+|++-+.... ...|...|.-|...|...|++++|.-+
T Consensus 99 ~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 34455555555554442 12223333333333444444444444333321 123444555555555555555555555
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhCC
Q 048179 469 AKKVLKLNPDDLGIHALVSNFFAMEQ 494 (589)
Q Consensus 469 ~~~~~~~~p~~~~~~~~l~~~~~~~g 494 (589)
+++++=+.|.++..+..++.++.-.|
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 55555555555555555555444433
No 136
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.28 E-value=2.1e-06 Score=61.35 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=60.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC-ChHHHHHHHHHHHhC
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ-KWEEVAGVRKTMRKS 509 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 509 (589)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999 799999999988753
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00014 Score=76.26 Aligned_cols=144 Identities=11% Similarity=0.084 Sum_probs=111.2
Q ss_pred hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 048179 306 RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTF 381 (589)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~ 381 (589)
+..+.++..+..|.......|.+++|..+++.+.+ | +...+..++..+.+.+++++|+..+++.... .|+ ....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 66777788888888888999999999999988875 4 4456777888888999999999999888875 444 4456
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHH
Q 048179 382 ASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALL 453 (589)
Q Consensus 382 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~ 453 (589)
..+..++.+.|.+++|..+|+++.. ..+.+...+..+..++...|+.++|...|++... .|....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6677778888999999999999886 3334477888888889999999999999888732 34444544444
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=7.1e-05 Score=72.46 Aligned_cols=127 Identities=15% Similarity=0.097 Sum_probs=105.4
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSG 392 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g 392 (589)
.+..+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++.+.++.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3446677777788999999999999998777777788888888899999999999998753 345556666667788999
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 048179 393 LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST 442 (589)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (589)
+++.|..+.+++.+ -.+.+..+|..|+.+|.+.|++++|+..++.++.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999985 3334477999999999999999999999999874
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=7.6e-05 Score=62.44 Aligned_cols=115 Identities=9% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCCC-CCh----hHHHHHHHHHHhcCCchH
Q 048179 391 SGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMSTE-PGL----AVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~----~~~~~l~~~~~~~~~~~~ 464 (589)
.++...+...++.+.+.++-.|- ....-.+...+...|++++|...|+..... ||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56666666667777664321111 223334556667777777777777776332 332 234445566777777877
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 465 GEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 465 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
|...++.. .-.+-.+..+..+|++|.+.|++++|...|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777553 233445567777888888888888888877653
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.2e-06 Score=50.88 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCc
Q 048179 42 DTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDS 76 (589)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 76 (589)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47899999999999999999999999999888874
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.17 E-value=3.4e-06 Score=63.00 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHhcCC-CC---ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHH
Q 048179 427 AGEVEEALKIVDSMST-EP---GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 427 ~g~~~~A~~~~~~~~~-~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
.|++++|+.+++++.. .| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677777777777632 23 445566678888888888888888888 777777777777888888888888888888
Q ss_pred HHH
Q 048179 503 RKT 505 (589)
Q Consensus 503 ~~~ 505 (589)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=4.4e-05 Score=74.25 Aligned_cols=88 Identities=8% Similarity=0.042 Sum_probs=63.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHH
Q 048179 421 VDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEE 498 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 498 (589)
...+...|++++|++.|+++. ..| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 345566777777777777752 233 455666667777777888888888888888888777778888888888888888
Q ss_pred HHHHHHHHHh
Q 048179 499 VAGVRKTMRK 508 (589)
Q Consensus 499 a~~~~~~m~~ 508 (589)
|...+++..+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 8887777765
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00022 Score=62.31 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=121.9
Q ss_pred cCCHHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCH
Q 048179 356 HGHGEEALSLFLQMIE---TM-VKPDHS-TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEV 430 (589)
Q Consensus 356 ~g~~~~A~~~~~~m~~---~~-~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 430 (589)
..+.++..+++.++.. .| ..|+.. .|-.+.-+....|..+.|...++.+...+ +-+..+-..-.-.+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4567888888888764 34 556665 45667777888899999999999998854 33333333333456778999
Q ss_pred HHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 431 EEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 431 ~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
++|+++++.... .| |..++.--+......|+.-+|++-+...++..|.|..+|.-++.+|...|++++|.=.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999843 34 6777888888888999999999999999999999999999999999999999999999999874
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=3.7e-06 Score=50.59 Aligned_cols=35 Identities=34% Similarity=0.670 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCh
Q 048179 143 VCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADE 177 (589)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 177 (589)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.14 E-value=7.1e-06 Score=57.77 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=51.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 452 LLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 452 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678889999999999999999999999999999999999999999999999887643
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=2.8e-05 Score=59.49 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
.+..+...+...|++++|...+++.. ..| +...+..+...+...++++.|.+.++++++..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 34567778888899999999988863 234 3467777888888899999999999999999998888999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 048179 494 QKWEEVAGVRKTMRKS 509 (589)
Q Consensus 494 g~~~~a~~~~~~m~~~ 509 (589)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999887653
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=2.7e-05 Score=69.84 Aligned_cols=96 Identities=22% Similarity=0.253 Sum_probs=54.2
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCC-hhHHHHHHHHHHhcCCchH
Q 048179 388 LSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSM-STEPG-LAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 464 (589)
..+.+++.+|+..|.++++ +.|+ ...|..-..+|.+.|.++.|++-.+.. ...|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4455666666666666653 2333 444444555666666666666655554 22332 3456666666666666666
Q ss_pred HHHHHHHHhccCCCCchhHHHH
Q 048179 465 GEKVAKKVLKLNPDDLGIHALV 486 (589)
Q Consensus 465 a~~~~~~~~~~~p~~~~~~~~l 486 (589)
|++.|+++++++|++......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 6666666666666665444444
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.018 Score=59.75 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCChHHHHHHhccCCCCC-cccHHHHHHH--HHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHH
Q 048179 23 KNDIVSARKLFEELPLRG-VDTYNSIIIA--YSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIW 99 (589)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 99 (589)
.+++..|....+.+..+. ...|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455666666665554222 1233444443 35667777777777666554433 6666777777777777777777777
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhCCChH----HHHHHHHhcCCCCcchHH
Q 048179 100 RKAVELGYGNDVFVGSSMLNLYVKCGKMN----EAMVAFEKMQRKDLVCWS 146 (589)
Q Consensus 100 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~ 146 (589)
+++.+. .|+......+..+|.|.+.+. .|.++++..+++--.-|+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 776655 344555566666666665543 356666655544333443
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=4.7e-05 Score=61.36 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC---chhHHHHH
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMST-EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD---LGIHALVS 487 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 487 (589)
.+..++..+.+.|++++|.+.++.+.. .|+ ...+..+..++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666665522 222 2344455666666667777777777766666654 34566666
Q ss_pred HHHHhCCChHHHHHHHHHHHhC
Q 048179 488 NFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777666653
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00028 Score=59.06 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHH
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMVKPD---HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT--EKHYACM 420 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 420 (589)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44444444 4778888888888888763 222 123344556778889999999999988875 32222 2234457
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 421 VDLLARAGEVEEALKIVDSMSTE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
..++...|++++|+..++..... .....+..++..+...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78888899999999998776443 345566677778899999999999988764
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=5.8e-06 Score=49.31 Aligned_cols=33 Identities=30% Similarity=0.626 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCC
Q 048179 42 DTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRP 74 (589)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 74 (589)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888887776
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=4.6e-05 Score=68.43 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=73.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCC
Q 048179 351 ASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGE 429 (589)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 429 (589)
.-+.+.+++.+|+..|.+.++.. +-|++-|..=..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34667788888888888888753 4456667777778888888888888777776 34455 6778888888888888
Q ss_pred HHHHHHHHHhc-CCCCChhHHHHHHH
Q 048179 430 VEEALKIVDSM-STEPGLAVWVALLS 454 (589)
Q Consensus 430 ~~~A~~~~~~~-~~~p~~~~~~~l~~ 454 (589)
+++|++.|++. ...|+..+|..=+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 88888888875 45677666554443
No 153
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00094 Score=59.01 Aligned_cols=244 Identities=11% Similarity=0.023 Sum_probs=153.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHH
Q 048179 250 ISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPS 329 (589)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 329 (589)
++-+.-.|.+..++..-...... +.+...-.-+-++|...|...... ..+..+..+.......+......-++.+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---cccccccCChHHHHHHHHHHhhCcchhH
Confidence 34455567777777655544332 233344444555665555443321 2222222333333333333333334333
Q ss_pred HHH-HHHHhcCCCC---hhHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048179 330 CAR-ALFDQMQSRD---LISWN-VIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLM 404 (589)
Q Consensus 330 ~A~-~~~~~~~~~~---~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 404 (589)
+-. ++.+.+..+. ..+|. .-...|+..|++++|++..... -..+.... =...+.+...++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al--~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAAL--NVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 322 2333333322 11233 2345688999999999988762 12222222 233455667889999999999
Q ss_pred HHhcCCCCChhhHHHHHHHH----HHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 405 VSKYKIQPTEKHYACMVDLL----ARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 405 ~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
.+- .+-.+.+.|..++ .-.+...+|.-+|++|.. .|+..+.+-...+|...|++++|+.+++.++..+|+
T Consensus 164 q~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 852 3444555455544 445689999999999965 488888899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCChHHHH-HHHHHHHh
Q 048179 479 DLGIHALVSNFFAMEQKWEEVA-GVRKTMRK 508 (589)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 508 (589)
++.++.++.-.-...|+-.++. +.+.+++.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999999998888899887764 45555554
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=0.0028 Score=67.60 Aligned_cols=232 Identities=11% Similarity=0.052 Sum_probs=127.8
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048179 78 TFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQ 157 (589)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (589)
.+..|+..+...+++++|.++.+...+.. +.....|-.+...+...++.+++..+ .++..+....+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 44455555555555555555555444432 11122222222244444544443322 23333333334
Q ss_pred ccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048179 158 PREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 158 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
+.-+..+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|... ++++|..++.+
T Consensus 99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 43333333333332 2233466667777777777777777777777766 44778888888888888 88888887766
Q ss_pred cCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHH
Q 048179 238 MSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSL-VSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGT 316 (589)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 316 (589)
.. ..|...+++.++.+++.++... .|+...+ ..+++..... .+..--..++-
T Consensus 175 AV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~--------------~~~~~~~~~~~ 227 (906)
T PRK14720 175 AI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH--------------REFTRLVGLLE 227 (906)
T ss_pred HH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhh--------------hccchhHHHHH
Confidence 43 3366677888888888888775 3443322 2222211111 12222334445
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 048179 317 SVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYG 354 (589)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 354 (589)
.+-..|...++++++..+|..+.+ .|..+..-++.+|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 666677777788888888887765 34445555555554
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1.2e-05 Score=47.92 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048179 344 ISWNVIIASYGIHGHGEEALSLFLQMIETMVKP 376 (589)
Q Consensus 344 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 376 (589)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=98.01 E-value=0.00018 Score=59.24 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCCh
Q 048179 419 CMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKW 496 (589)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 496 (589)
....-+...|++++|..+|+-+.. .-+..-|..|..+|...+++++|+..|..+..++++||......+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 445556689999999999988632 346667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 048179 497 EEVAGVRKTMRK 508 (589)
Q Consensus 497 ~~a~~~~~~m~~ 508 (589)
++|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.95 E-value=2.8e-05 Score=55.28 Aligned_cols=52 Identities=15% Similarity=0.317 Sum_probs=44.2
Q ss_pred HhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578888999999999999999999999999999999999999998887765
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=0.00013 Score=63.17 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMST-EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
...+..+...+.+.|++++|...|++... .|+ ...+..+...+...|+++.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 33456666667777777777777776521 122 3567788888899999999999999999999999989989999
Q ss_pred HHHhCCC--------------hHHHHHHHHHHHh
Q 048179 489 FFAMEQK--------------WEEVAGVRKTMRK 508 (589)
Q Consensus 489 ~~~~~g~--------------~~~a~~~~~~m~~ 508 (589)
+|...|+ +++|.+.+++...
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 9988776 4556666655554
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00015 Score=65.61 Aligned_cols=106 Identities=10% Similarity=0.098 Sum_probs=88.5
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhc---CCchHHHHHHHHHhccCCCCchhHHH
Q 048179 411 QPTEKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNH---KKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 411 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
+-|.+.|-.|...|.+.|+.+.|..-|.+.. .. +++..+..+..++... ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4568899999999999999999999998873 23 4666777777764333 35788999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 048179 486 VSNFFAMEQKWEEVAGVRKTMRKSGMKKVPG 516 (589)
Q Consensus 486 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 516 (589)
|+..+...|++.+|...|+.|.+.....+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999866554443
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00018 Score=57.82 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC----hhHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMST-EPG----LAVWVALL 453 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~ 453 (589)
++..+...+...|++++|...|+.+.+.+.-.+. ...+..+..++.+.|++++|.+.++.+.. .|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566667777778787777777654211111 33455677778888888888888877632 233 34577777
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCchhHH
Q 048179 454 SGCHNHKKFSIGEKVAKKVLKLNPDDLGIHA 484 (589)
Q Consensus 454 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 484 (589)
.++...|+.+.|...++++++..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888888888888888887765443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00025 Score=69.05 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=79.9
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCch
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFS 463 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 463 (589)
..+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4455667888888888887753 23346677777788888888888888888763 334 5667788888888899999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 464 IGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 464 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
.|+..++++++++|+++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999998888877776664444
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00016 Score=62.28 Aligned_cols=93 Identities=12% Similarity=-0.109 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
...|..++..+...|++++|+..|++.. ..|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556677778888899999998888762 2222 3478889999999999999999999999999999999999999
Q ss_pred HHH-------hCCChHHHHHHHHHH
Q 048179 489 FFA-------MEQKWEEVAGVRKTM 506 (589)
Q Consensus 489 ~~~-------~~g~~~~a~~~~~~m 506 (589)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 988 888888766666554
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.86 E-value=4.6e-05 Score=55.09 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=52.9
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
...+...++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35688899999999999999999999999999999999999999999999999886543
No 164
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.058 Score=56.24 Aligned_cols=218 Identities=12% Similarity=0.053 Sum_probs=146.9
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChH
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACV--SLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMN 128 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 128 (589)
....+++..|+....++.+. .||. .|..+++++. +.|..++|..+++.....+.. |..+...+-..|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567889999999998876 3443 4566666664 889999999888887666544 8889999999999999999
Q ss_pred HHHHHHHhcCC--CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC----------cHHH
Q 048179 129 EAMVAFEKMQR--KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGD----------SRFG 196 (589)
Q Consensus 129 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------~~~a 196 (589)
+|..++++..+ |+......+..+|++.+.+.+-.+.--+|-+ ..+-+.+.|.++++...+.-. ...|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999987 4555555666777887777654444434433 244467778888776654321 2234
Q ss_pred HHHHHHHHHhc-CCCchHHHHHHHHHHHhcCCHHHHHHHHhh-c----CCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 048179 197 LSVHGYSIRRH-LNLDVKVQTSLVDMYAKTGHLDLASHVFKN-M----SRINIVTWGALISGFAQNGLAGSTLELLMEMQ 270 (589)
Q Consensus 197 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 270 (589)
....+.+++.+ .-.+..=...........|++++|.+++.. . ..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55555555543 211222222233445667889999998832 2 22233334455667778889999999888888
Q ss_pred hcC
Q 048179 271 SCG 273 (589)
Q Consensus 271 ~~g 273 (589)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 875
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.0012 Score=67.23 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
.++..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.++++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4444444444455666666666666666665 35556666666666666666666665555433
No 166
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.77 E-value=0.036 Score=52.04 Aligned_cols=288 Identities=16% Similarity=0.138 Sum_probs=185.9
Q ss_pred cCCHHHHHHHHhhcC---CCCeehHHHHHH--HHHhCCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhccCchhhH
Q 048179 225 TGHLDLASHVFKNMS---RINIVTWGALIS--GFAQNGLAGSTLELLMEMQSCGFEPDSV--SLVSALLACAQIGFLKLG 297 (589)
Q Consensus 225 ~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a 297 (589)
.|+-..|++.-.+.. ..|-...-.++. +-.-.|+++.|.+-|+.|.. .|... .+..+.-.--+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 466666666655433 234444444443 33457888999999988876 34332 233333344567888888
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CChh--HHHHHHHHH---HhcCCHHHHHHHHH
Q 048179 298 KSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----RDLI--SWNVIIASY---GIHGHGEEALSLFL 367 (589)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~---~~~g~~~~A~~~~~ 367 (589)
+++-+.....-+.-.....+.+...+..|+++.|+++.+.-.. +++. .--.|+.+- .-.-+...|...-.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8887777766666677788999999999999999999986543 4432 112222211 11234566666555
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc----CC
Q 048179 368 QMIETMVKPDHS-TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM----ST 442 (589)
Q Consensus 368 ~m~~~~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 442 (589)
+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|.+..+.. ..+.|.|+ .+..-+++. ..
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhc
Confidence 5444 566644 3344567789999999999999999854 566655533 23345554 333333322 12
Q ss_pred C-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC-CChHHHHHHHHHHHhCCCccCCceeEE
Q 048179 443 E-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME-QKWEEVAGVRKTMRKSGMKKVPGYSVV 520 (589)
Q Consensus 443 ~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~s~~ 520 (589)
+ .+..+..++..+....|++..|..-.+.+....| ..+.|..|+++-... |+-.++...+-+..+. ..+|.++-.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~ad 401 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWTAD 401 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCccccc
Confidence 3 3566777788888899999999999999999999 567888899987665 9999998888776542 234444333
Q ss_pred EECCEEE
Q 048179 521 EVNGELH 527 (589)
Q Consensus 521 ~~~~~~~ 527 (589)
.+.+..+
T Consensus 402 g~vse~w 408 (531)
T COG3898 402 GVVSEAW 408 (531)
T ss_pred Ccccccc
Confidence 3333333
No 167
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.76 E-value=2e-05 Score=46.50 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=31.0
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhCCChHHHHH
Q 048179 469 AKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAG 501 (589)
Q Consensus 469 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 501 (589)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=3.7e-05 Score=44.58 Aligned_cols=31 Identities=35% Similarity=0.652 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhCCCccHHHHHHHHHHHCCC
Q 048179 143 VCWSSMINGLVFNGQPREAVDAYKRMKKEGI 173 (589)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 173 (589)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877653
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=4.3e-05 Score=44.31 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHHHHCC
Q 048179 42 DTYNSIIIAYSRKESPFEVLGLYNQMIKED 71 (589)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 71 (589)
++||++|++|++.|++++|.++|++|++.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367777777777777777777777777765
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00041 Score=52.81 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=46.8
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCc
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKF 462 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~ 462 (589)
...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++... ..| +..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555554432 11222344445555555555555555555532 122 234555555666666666
Q ss_pred hHHHHHHHHHhccCC
Q 048179 463 SIGEKVAKKVLKLNP 477 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p 477 (589)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666666555
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.0014 Score=61.60 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 344 ISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSA-LSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 344 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367777888888888889999999888543 2233334333333 33356777799999999885 4556788999999
Q ss_pred HHHHcCCHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCch
Q 048179 423 LLARAGEVEEALKIVDSMSTE-PG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLG 481 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 481 (589)
.+.+.++.+.|..+|++.... |. ...|...+.--.+.|+.+....+.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999997442 33 348999999999999999999999999998887443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0011 Score=57.34 Aligned_cols=130 Identities=12% Similarity=0.136 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 048179 343 LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD--HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACM 420 (589)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 420 (589)
...+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...++++.+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566666777777888888888887776543322 346666777777778888888887777753 22235555666
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCC
Q 048179 421 VDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
..++...|+...+..-++.. ...+++|.++++++++.+|++ +..+...+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66776666665554333321 112677889999999999976 4444444444443
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.69 E-value=0.00013 Score=51.29 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 420 MVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667888999999999999874 345 566888888899999999999999999999999875
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=0.00013 Score=54.29 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHH
Q 048179 356 HGHGEEALSLFLQMIETMVK-PDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEA 433 (589)
Q Consensus 356 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 433 (589)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 34555555555555554321 1223333345555555555555555554 1 11121 12222334555555555555
Q ss_pred HHHHH
Q 048179 434 LKIVD 438 (589)
Q Consensus 434 ~~~~~ 438 (589)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.0027 Score=54.65 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048179 344 ISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD--HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMV 421 (589)
Q Consensus 344 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 421 (589)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+. .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3556666666677777777777777765432221 235666667777777777777777776642 122234444444
Q ss_pred HHHH
Q 048179 422 DLLA 425 (589)
Q Consensus 422 ~~~~ 425 (589)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.63 E-value=0.012 Score=49.27 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC---ChhHH
Q 048179 374 VKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP---GLAVW 449 (589)
Q Consensus 374 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 449 (589)
..|+...-..|..+....|+..+|...|++.... -+..|......+..+....+++..|...++.+. ..| ++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778889999999999999999998873 445667788888999999999999999998863 222 23345
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 450 VALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 450 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
-.+..++...|.++.|+..|+.++...| .+..-...+..+.++|+.++|..-+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5667789999999999999999999988 56666777888999999888876554443
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0019 Score=65.81 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcC--------CcHHHHHHHHHHHH
Q 048179 340 SRDLISWNVIIASYGIH--G---HGEEALSLFLQMIETMVKPD-HSTFASLLSALSHS--------GLVEEGRYWFDLMV 405 (589)
Q Consensus 340 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 405 (589)
..+...|...+.+.... + ....|..+|++.++. .|+ ...+..+..++... .+...+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 46788999998875542 2 377899999999986 565 45666555444322 12334444444433
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhH
Q 048179 406 SKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 406 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
.....+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++..|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 22123344577888877778899999999999997 4468888999999999999999999999999999999888543
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.63 E-value=0.00038 Score=65.04 Aligned_cols=129 Identities=9% Similarity=0.020 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHH---HHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhc-------CC-CCCh
Q 048179 379 STFASLLSALSHSGLVEEGRYWFDLM---VSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSM-------ST-EPGL 446 (589)
Q Consensus 379 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~ 446 (589)
..|..|...|.-.|+++.|+.+.+.- .+.||-... ...+..+..++.-.|+++.|.+.|+.- .. ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34666666666778999998887652 333443322 456788899999999999999988763 11 1345
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccC------CCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLN------PDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.+..+|.++|....++++|+..+.+=+.+. -....++..|+++|...|..+.|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 567788999999999999999887766432 2345678889999999999999988776654
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.11 Score=52.74 Aligned_cols=361 Identities=14% Similarity=0.151 Sum_probs=174.1
Q ss_pred CCCcccHHHHHHHHhccCCHHHHHHHHHHHHHh-CCC--------CChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcc
Q 048179 73 RPDSSTFTVALKACVSLMDLKMGEEIWRKAVEL-GYG--------NDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLV 143 (589)
Q Consensus 73 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 143 (589)
.|.+..|..+.......-.++.|+..|-+.... |++ .+.....+=+.+| -|++++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 577888888887777766777777766543221 111 1111222333333 4899999999988887764
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHH
Q 048179 144 CWSSMINGLVFNGQPREAVDAYKRMKKEGIDAD----EVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLV 219 (589)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 219 (589)
.|..+.+.|++-.+.++++. -|-..| ...|+.+...++....|+.|.+++...-.. ...+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 34555666776655555432 111111 245666666677777777777766543211 2355
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHH
Q 048179 220 DMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKS 299 (589)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 299 (589)
+++.+..++++-+.+-+.+++ |....-.+...+.+.|.-++|.+.|-+-- .|. ..+.+|...+.+.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHH
Confidence 566666666665555555554 33444555666666666666666553321 121 22334444444444443
Q ss_pred HHHHHh-hcCCC-----------ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChh---HHHHH----HHHHHhcCCHH
Q 048179 300 IHGYTV-RRFDF-----------NLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLI---SWNVI----IASYGIHGHGE 360 (589)
Q Consensus 300 ~~~~~~-~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l----i~~~~~~g~~~ 360 (589)
+.+... ..+.. +..+ .--|..+.+.|+.-+|.+++.+|.++... .+..+ +-+-.-..++.
T Consensus 900 laq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~ 978 (1189)
T KOG2041|consen 900 LAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHR 978 (1189)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 332221 10000 0000 12245556666665566666555431110 01110 00111112233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 361 EALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 361 ~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
++++-.++....|...|... +...|...++-++.+..-+ | ....+|-.|..--...|..+.|+..--.+
T Consensus 979 ~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L 1047 (1189)
T KOG2041|consen 979 QTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALIL 1047 (1189)
T ss_pred HHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhh
Confidence 34444444444443322221 1222333333334333222 1 22345555555566778888887654443
Q ss_pred CC----CCChhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 441 ST----EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 441 ~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
.. -|-..+|..|.-+.+..+.+.-.-++|-++..
T Consensus 1048 ~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1048 SDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred ccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 22 14444554444343333444444444544443
No 180
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00059 Score=64.26 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCE
Q 048179 446 LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGE 525 (589)
Q Consensus 446 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 525 (589)
..++..|..+|.+.+++..|++...++++++|+|.-+++.-+.+|...|+++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 456778888899999999999999999999999999999999999999999999999999986
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 048179 526 LHAFIMEDKSHNQYEDIVYVLKKLYLEMRAI 556 (589)
Q Consensus 526 ~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~ 556 (589)
..|.++.|...|..+..++++.
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHHH
Confidence 3456788888888877777643
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.59 E-value=0.00013 Score=51.81 Aligned_cols=62 Identities=18% Similarity=0.407 Sum_probs=34.2
Q ss_pred HcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHH
Q 048179 426 RAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVS 487 (589)
Q Consensus 426 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 487 (589)
..|++++|++.|+++. ..| +..++..+..+|...|++++|.+.++++...+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4555666666665542 123 4445555666666666666666666666666665555444443
No 182
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=97.58 E-value=4e-05 Score=60.30 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=46.4
Q ss_pred CceeEEEECCEEEEEEecCCCCCChHHHHHHHH-HHHHHHHhcCCcccCCCC----cccc-cccchhhhhhccccccc
Q 048179 515 PGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLK-KLYLEMRAISSWLQGHME----EHEE-HDPLSTAAQYAPTYYLK 586 (589)
Q Consensus 515 ~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~ 586 (589)
.||||+++ |.|.+||.+||+.+.++..+. .....++..||.++.... ...+ .-+..|++++|.+|||-
T Consensus 1 ~~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli 74 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLI 74 (116)
T ss_pred CCCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhccc
Confidence 37999987 999999999999855554332 344555556665443211 1222 24788999999999973
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.51 E-value=0.087 Score=49.62 Aligned_cols=297 Identities=15% Similarity=0.103 Sum_probs=162.8
Q ss_pred hHHHHHHHHHh--CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHH--ccCCcHHHHHHHHHHHHhcCCCchHH--HHH
Q 048179 144 CWSSMINGLVF--NGQPREAVDAYKRMKKEGIDADEVVMMGLIQACA--DLGDSRFGLSVHGYSIRRHLNLDVKV--QTS 217 (589)
Q Consensus 144 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 217 (589)
.|.+|-.+++. .|+-..|.++-.+-.+. +.-|...+..++.+-. -.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34445555443 34555555554443322 3445555666665443 357777777777777642 11111 122
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHH--HHHHHHHHhc-
Q 048179 218 LVDMYAKTGHLDLASHVFKNMSR--I-NIVTWGALISGFAQNGLAGSTLELLMEMQSCG-FEPDSVS--LVSALLACAQ- 290 (589)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~- 290 (589)
|.-.--+.|..+.|+..-+..-. | -...+.+.+...+..|+++.|+++++.-+... +.++..- -..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22333456777777776665543 2 23567788888899999999999888765543 3444321 2223332211
Q ss_pred --cCchhhHHHHHHHHhhcCCCChh-HHHHHHHHhHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHH
Q 048179 291 --IGFLKLGKSIHGYTVRRFDFNLV-LGTSVIDMYSKCGVPSCARALFDQMQS--RDLISWNVIIASYGIHGHGEEALSL 365 (589)
Q Consensus 291 --~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 365 (589)
..+...++..-.... .+.|+.. .--.-...+.+.|++.++-.+++.+.+ |.+..|.. -.+.+.| +.++.-
T Consensus 240 ~ldadp~~Ar~~A~~a~-KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~g--dta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEAN-KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSG--DTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHh-hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCC--CcHHHH
Confidence 112333333333322 2222221 222334567778888888888887765 33333322 2233444 344444
Q ss_pred HHHHHHc-CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHhcCC
Q 048179 366 FLQMIET-MVKPDH-STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA-GEVEEALKIVDSMST 442 (589)
Q Consensus 366 ~~~m~~~-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 442 (589)
+++..+. .++||. .....+..+....|++..|..--+... ...|....|..|.+.-... |+-.++..++-+...
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4444321 245553 455566677777788877777666655 4467777777777766544 888888888777655
Q ss_pred CCChhHHHHH
Q 048179 443 EPGLAVWVAL 452 (589)
Q Consensus 443 ~p~~~~~~~l 452 (589)
.|....|...
T Consensus 392 APrdPaW~ad 401 (531)
T COG3898 392 APRDPAWTAD 401 (531)
T ss_pred CCCCCccccc
Confidence 5555555443
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.49 E-value=0.00044 Score=66.70 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchh---HHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGI---HALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
+...|+.+..+|...|++++|+..++++++++|++..+ |++++.+|...|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46688889999999999999999999999999988754 889999999999999999999888874
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.083 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=13.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh
Q 048179 248 ALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
.+...+.+.|++++|+++|++...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555666666666666665544
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.42 E-value=0.13 Score=49.49 Aligned_cols=418 Identities=12% Similarity=0.062 Sum_probs=211.0
Q ss_pred hhcCCChHHHHHHhccCCCC---Ccc------cHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH--hc
Q 048179 20 YGGKNDIVSARKLFEELPLR---GVD------TYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKAC--VS 88 (589)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~---~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~ 88 (589)
+.+.+++.+|.++|.++-.. +.+ .-+.+|.+|..+ +.+.....+....+. .| ...|..+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45778999999999887522 222 245566776553 344444444444443 33 44555555554 36
Q ss_pred cCCHHHHHHHHHHHHHh--CCCC------------ChhhHHHHHHHHHhCCChHHHHHHHHhcCC--------CCcchHH
Q 048179 89 LMDLKMGEEIWRKAVEL--GYGN------------DVFVGSSMLNLYVKCGKMNEAMVAFEKMQR--------KDLVCWS 146 (589)
Q Consensus 89 ~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 146 (589)
.+.++.|.+.+..-... +..+ |...-+..++.+...|++.+++.+++++.. =|+.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888887765544 2211 222335567778889999999999988864 2677788
Q ss_pred HHHHHHHhC--------CCccHHHHHH-------HHHHHC------CCCCChhhHHHHHHHHHcc--CCcHHHHHHHHHH
Q 048179 147 SMINGLVFN--------GQPREAVDAY-------KRMKKE------GIDADEVVMMGLIQACADL--GDSRFGLSVHGYS 203 (589)
Q Consensus 147 ~li~~~~~~--------g~~~~A~~~~-------~~m~~~------~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~ 203 (589)
.++-.+.+. ...+-+.+.| .+|... .+.|....+..++....-. ....--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755443321 2222222222 333221 2445555555555544322 2222333444444
Q ss_pred HHhcCCCch-HHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 048179 204 IRRHLNLDV-KVQTSLVDMYAKTGHLDLASHVFKNMSR--------INIVTWGALISGFAQNGLAGSTLELLMEMQSCGF 274 (589)
Q Consensus 204 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 274 (589)
...-..|+- -+...|..-+.. +.+++..+.+.+.. .=+.++..++....+.++...|-..+.-+.-.
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l-- 327 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL-- 327 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--
Confidence 444444543 233344444443 45555544444322 23456777888888888888888887766543
Q ss_pred CCCHHHHHH-------HHHHHh-ccCchhhHHHH---HHHHhhcCCCC-hhHHHHHHHH---hHhcCC-HHHHHHHHHhc
Q 048179 275 EPDSVSLVS-------ALLACA-QIGFLKLGKSI---HGYTVRRFDFN-LVLGTSVIDM---YSKCGV-PSCARALFDQM 338 (589)
Q Consensus 275 ~p~~~~~~~-------ll~~~~-~~~~~~~a~~~---~~~~~~~~~~~-~~~~~~l~~~---~~~~g~-~~~A~~~~~~~ 338 (589)
.|+...-.- +-+..+ .-.....-+.+ ++.+. ..+.| .....-|+.. +=+.|. -++|.++++.+
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q-s~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ-SYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 343321111 111111 11111111222 22221 11111 1122222211 222333 56677766665
Q ss_pred CC---CChhHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHH--HhcCCcHHHHHHHHH
Q 048179 339 QS---RDLISWNVIIA----SYGI---HGHGEEALSLFLQMIETMVKPDHST----FASLLSA--LSHSGLVEEGRYWFD 402 (589)
Q Consensus 339 ~~---~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t----~~~ll~a--~~~~g~~~~a~~~~~ 402 (589)
.. -|...-|.... .|.+ ......-+.+-+-+.+.|++|-.+. -+.|..| +...|++.++.-+-.
T Consensus 407 l~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 43 34433333221 2221 1223333333333445566654332 2222222 345677777765555
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHH
Q 048179 403 LMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVA 451 (589)
Q Consensus 403 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 451 (589)
-+. .+.|++.+|..++-++....++++|+.++..++ |+..++++
T Consensus 487 WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 487 WLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 444 556777777777777777777777777777776 34444433
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00036 Score=49.64 Aligned_cols=65 Identities=17% Similarity=0.269 Sum_probs=51.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcC-CchHHHHHHHHHhccCC
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHK-KFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 477 (589)
++..|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35567778888888888888888888762 234 5667888888888888 79999999999998887
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.13 Score=48.99 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=54.6
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 398 (589)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-..+... +-.+.-|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33444555566666665555555666666666666666666554443221 112344555566666666666665
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHh
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDS 439 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (589)
.+...+. +..-+..|.++|++.+|.+.--+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 5554421 13344555666666665554433
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.40 E-value=0.00027 Score=44.83 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
.+|..+..++...|++++|+++++++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999988864
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0015 Score=60.18 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC-CCCh----hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC---chhHHHHH
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMST-EPGL----AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD---LGIHALVS 487 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 487 (589)
.|...+..+.+.|++++|...|+.+.. .|+. .++.-+..++...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556677777766666532 2432 355556666777777777777777777666653 45556667
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 048179 488 NFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+|...|++++|.+++++..+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777665
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0044 Score=58.17 Aligned_cols=127 Identities=15% Similarity=0.061 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhH
Q 048179 245 TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLA-CAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYS 323 (589)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (589)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++.+...+...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46666666666666777777777776442 2233334333333 333456666777777777777778888888888888
Q ss_pred hcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048179 324 KCGVPSCARALFDQMQS--R----DLISWNVIIASYGIHGHGEEALSLFLQMIET 372 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 372 (589)
+.|+.+.|+.+|++... + ....|...+.--.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999988765 2 2347888888888888888888888888774
No 192
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.39 E-value=0.19 Score=50.45 Aligned_cols=405 Identities=12% Similarity=0.026 Sum_probs=235.5
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHH-HHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHH
Q 048179 40 GVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFT-VALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSML 118 (589)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 118 (589)
+...|+.+|..--+....+.+..++..++.. .|...-|- ....-=.+.|..+.+.++|++.+.. ++.++..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4567888888766666667777888888765 45554332 3333335778899999999998875 667778887777
Q ss_pred HHHHh-CCChHHHHHHHHhcCC------CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHH---
Q 048179 119 NLYVK-CGKMNEAMVAFEKMQR------KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACA--- 188 (589)
Q Consensus 119 ~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--- 188 (589)
..+.. .|+.+...+.|++... .....|...|.--..++++.....+|++.++.. ..-++....-+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 66554 5777788888888764 355678888888888899999999999988742 122222222221
Q ss_pred cc------CCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC-HHHHHHHHhhcCCCCee---hHHHH-------HH
Q 048179 189 DL------GDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGH-LDLASHVFKNMSRINIV---TWGAL-------IS 251 (589)
Q Consensus 189 ~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~---~~~~l-------i~ 251 (589)
+. ...+++.++-...... ..-...+. .+.-....+.+..+... .-+.+ -.
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~ 263 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK 263 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence 11 1122222221111110 00000111 11111111222111110 00000 00
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHH
Q 048179 252 GFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCA 331 (589)
Q Consensus 252 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 331 (589)
.+...-...+....|+.-... | +..+..-.+++...|+..++.-.+.|+.+.+
T Consensus 264 ~~~~s~~~~~kr~~fE~~Ikr---p------------------------Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKR---P------------------------YFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccc---c------------------------ccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 111111111111111111110 0 0000011223456677778888888999988
Q ss_pred HHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 048179 332 RALFDQMQSR---DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKY 408 (589)
Q Consensus 332 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 408 (589)
.-+|+++.-| -...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-+...|+++.|..+++.+.+.+
T Consensus 317 ~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 317 FILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 8888887653 2345666665555668888888877766654433333332222333566799999999999999853
Q ss_pred CCCCC-hhhHHHHHHHHHHcCCHHHHH---HHHHhcC-CCCChhHHHHHH----H-HHHhcCCchHHHHHHHHHhccCCC
Q 048179 409 KIQPT-EKHYACMVDLLARAGEVEEAL---KIVDSMS-TEPGLAVWVALL----S-GCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 409 ~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l~----~-~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
|+ ...-..-+....+.|..+.+. +++.... .+-+......+. . .+...++.+.|..++.++.+..|+
T Consensus 397 ---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 397 ---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD 473 (577)
T ss_pred ---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc
Confidence 55 444444566778899999888 5554442 222222222222 2 245668999999999999999999
Q ss_pred CchhHHHHHHHHHhCC
Q 048179 479 DLGIHALVSNFFAMEQ 494 (589)
Q Consensus 479 ~~~~~~~l~~~~~~~g 494 (589)
+...|..+.+.....+
T Consensus 474 ~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 474 CKVLYLELIRFELIQP 489 (577)
T ss_pred cHHHHHHHHHHHHhCC
Confidence 9999999998877766
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.033 Score=52.51 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVS 406 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 406 (589)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555555443
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.002 Score=49.04 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=68.4
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHHHHCCC-CCCcccHHHHHHHHhccC--------CHHHHHHHHHHHHHhCCCCChhh
Q 048179 43 TYNSIIIAYSRKESPFEVLGLYNQMIKEDV-RPDSSTFTVALKACVSLM--------DLKMGEEIWRKAVELGYGNDVFV 113 (589)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 113 (589)
+-...|..+..++++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777888999999999999999999 899999999999987543 34567788999999999999999
Q ss_pred HHHHHHHHHh
Q 048179 114 GSSMLNLYVK 123 (589)
Q Consensus 114 ~~~li~~~~~ 123 (589)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.0026 Score=50.43 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=60.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCC----CC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC---CchhHHHHHHHHH
Q 048179 420 MVDLLARAGEVEEALKIVDSMSTE----PG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD---DLGIHALVSNFFA 491 (589)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~~----p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 491 (589)
+..++-..|+.++|+.+|++.... ++ ...+..+..++...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666677777777777765221 11 235556677788888888888888888877676 6666677777888
Q ss_pred hCCChHHHHHHHHHHH
Q 048179 492 MEQKWEEVAGVRKTMR 507 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~ 507 (589)
..|+++||++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888887765443
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.32 E-value=0.044 Score=50.10 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDDL---GIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
..-|.+.|++.-|..-++.+++.-|+.+ .++..+..+|...|..++|.++.+.+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3448889999999999999998887654 667788899999999999999887654
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0033 Score=61.40 Aligned_cols=119 Identities=12% Similarity=-0.003 Sum_probs=89.3
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC-C-----CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhH
Q 048179 107 YGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR-K-----DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVM 180 (589)
Q Consensus 107 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 180 (589)
.+.+......+++.+....+++.+..++-+... | -..+..++|+.|.+.|..+.++.++..=...|+-||.+|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344555566667777677777778777776654 2 1235568888899999999999998888888999999999
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 048179 181 MGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKT 225 (589)
Q Consensus 181 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (589)
+.++..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888888777666666665555555554
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.01 Score=47.10 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=35.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCchhhHHHHHHHHh
Q 048179 248 ALISGFAQNGLAGSTLELLMEMQSCGFEPDS--VSLVSALLACAQIGFLKLGKSIHGYTV 305 (589)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 305 (589)
.+..++-..|+.++|+.+|++....|..... ..+..+.+++...|+.++|..+++...
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667788888888888888887755442 234444445555555555555555444
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.21 E-value=0.0026 Score=62.12 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHC--CCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIKE--DVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLY 121 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 121 (589)
...++..+....+.+.+..++.+.+.. ....-+.|..++++.|...|..+.+..++..=...|+-||.+++|.||+.+
T Consensus 69 ld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 69 LDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 333444444444455555555555443 222233444555555555555555555555555555555555555555555
Q ss_pred HhCCChHHHHHHHHhcC
Q 048179 122 VKCGKMNEAMVAFEKMQ 138 (589)
Q Consensus 122 ~~~g~~~~A~~~~~~~~ 138 (589)
.+.|++..|.++...|.
T Consensus 149 l~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMM 165 (429)
T ss_pred hhcccHHHHHHHHHHHH
Confidence 55555555555555443
No 200
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.18 E-value=0.011 Score=48.63 Aligned_cols=90 Identities=10% Similarity=-0.051 Sum_probs=48.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhcCCc
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNHKKF 462 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~ 462 (589)
..-+...|++++|.++|+-+..- -+-+..-|-.|.-++...|++++|++.|.... .. .|+..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 33344556666666666655531 12224445555566666666666666665542 12 3444555556666666666
Q ss_pred hHHHHHHHHHhccC
Q 048179 463 SIGEKVAKKVLKLN 476 (589)
Q Consensus 463 ~~a~~~~~~~~~~~ 476 (589)
+.|++.|+.++..-
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666543
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0007 Score=49.55 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcc----CCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKL----NPD---DLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888888888888888854 222 356788899999999999999999988754
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.15 E-value=0.0018 Score=46.65 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=53.4
Q ss_pred HHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHH
Q 048179 421 VDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALV 486 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 486 (589)
-..|.+.+++++|.+.++.+. ..| +...|......+...|+++.|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 356888999999999999873 334 566777788889999999999999999999999887665544
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.14 E-value=0.088 Score=44.23 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHhccCchhhHHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CChhHHHH
Q 048179 275 EPDSVSLVSALLACAQIGFLKLGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----RDLISWNV 348 (589)
Q Consensus 275 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 348 (589)
.|+...-..+..+....|+..+|...+++.. -.+..|..+.-.+.++....++...|..+++++.+ +.+.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4544444455555555555555555555555 22344444444455555555555555555554432 12222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048179 349 IIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
+...+...|++.+|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 34444445555555555544444
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.083 Score=48.31 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCee-h---HHHHHHHHHhCCChhHHHHHHHHHHhc
Q 048179 218 LVDMYAKTGHLDLASHVFKNMSR--INIV-T---WGALISGFAQNGLAGSTLELLMEMQSC 272 (589)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~a~~~~~~m~~~ 272 (589)
....+...|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44445667788888888877765 2221 1 123556677888888888888888775
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.12 E-value=0.0077 Score=55.50 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC----hhHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMST-EPG----LAVWVALL 453 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~ 453 (589)
.|...+....+.|++++|...|+.+.+.|.-.+- ...+-.+..+|...|++++|...|+.+.. -|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445567777777777777765421110 23555677777888888888887777632 132 34555566
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCch
Q 048179 454 SGCHNHKKFSIGEKVAKKVLKLNPDDLG 481 (589)
Q Consensus 454 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 481 (589)
..+...|+.+.|...++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6777889999999999999988887653
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.42 Score=49.19 Aligned_cols=335 Identities=12% Similarity=0.028 Sum_probs=158.5
Q ss_pred CCCCCCcccHHH-----HHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHhcCC--
Q 048179 70 EDVRPDSSTFTV-----ALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCG---KMNEAMVAFEKMQR-- 139 (589)
Q Consensus 70 ~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-- 139 (589)
.|++.+..-|.. ++.-+...+.+..|.++-..+-..-.. ...++.....-+.+.. +.+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 356555554443 345555566777777776655221111 1455666666666552 22233344444444
Q ss_pred CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCC----CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHH
Q 048179 140 KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGID----ADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQ 215 (589)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (589)
...++|..+.+--...|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-++...- +...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 35567777777777888888887776643222111 122234445555666666666666555544321 00000
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-CCeehHHHHHHHHHhCCChhHHHHHHH--HHH----hcCCCCCHHHHHHHHHHH
Q 048179 216 TSLVDMYAKTGHLDLASHVFKNMSR-INIVTWGALISGFAQNGLAGSTLELLM--EMQ----SCGFEPDSVSLVSALLAC 288 (589)
Q Consensus 216 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~--~m~----~~g~~p~~~~~~~ll~~~ 288 (589)
+....+...|..++.+..+ .|..+ +..+...++-.+++..|. ... ..|..|+ ......++
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~ 648 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAF 648 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHH
Confidence 0111223333444433322 11110 111112222222222211 100 1122233 22333344
Q ss_pred hccCchhhHHH----------HHHHHh--hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 048179 289 AQIGFLKLGKS----------IHGYTV--RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIH 356 (589)
Q Consensus 289 ~~~~~~~~a~~----------~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 356 (589)
++........+ +...+. .+....--+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 44333111111 111111 111111112233334455567777777777777767776666667777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 048179 357 GHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKI 436 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 436 (589)
+++++-.++-+.+. .+.-|.....+|.+.|+.++|.+++-+.. +. .-.+.+|.+.|++.+|.++
T Consensus 729 ~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHH
Confidence 77766554443322 13445566677777777777777665543 11 1356667777777776655
Q ss_pred H
Q 048179 437 V 437 (589)
Q Consensus 437 ~ 437 (589)
-
T Consensus 793 A 793 (829)
T KOG2280|consen 793 A 793 (829)
T ss_pred H
Confidence 4
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.056 Score=51.85 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=101.4
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCC-C------hhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQSR-D------LISWNVIIASYGI---HGHGEEALSLFLQMIETMVKPDHSTFASLL 385 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 385 (589)
..++-.|....+++...++++.+... + ...-....-++.+ .|+.++|++++..+....-.+++.|+..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677788888888888877652 1 1112223344555 788899999988866666677777877776
Q ss_pred HHHhc---------CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH----HHHHH---Hhc-------CC
Q 048179 386 SALSH---------SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEE----ALKIV---DSM-------ST 442 (589)
Q Consensus 386 ~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-------~~ 442 (589)
..|-. ....++|+..|.+.- .+.|+...--.++.++...|...+ ..++- ... ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65431 234667777777654 445654332233334444443222 22222 111 11
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 443 EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 443 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
..|...+.+++.++.-.||+++|.+.+++++++.|+.-
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 24556668899999999999999999999999987543
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.08 E-value=0.32 Score=47.04 Aligned_cols=434 Identities=9% Similarity=0.014 Sum_probs=201.5
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCCccc------HHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHH--HH
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPDSST------FTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNL--YV 122 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~ 122 (589)
+-+++++.+|.++|.+.-+.. ..++.. -+-+++++-. ++.+..........+.. | ...|-.|..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 346788999999998886652 222222 2345555543 45666666666665542 2 2233333332 34
Q ss_pred hCCChHHHHHHHHhcCCC------------------CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCC----CChhhH
Q 048179 123 KCGKMNEAMVAFEKMQRK------------------DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGID----ADEVVM 180 (589)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~t~ 180 (589)
+.+.+++|.+.|..-.+. |...=+..+.++...|++.++..++++|...=++ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887655421 1122345567777888888888888888664333 577777
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHh--CC
Q 048179 181 MGLIQACADLGDSRFGLSVHGYSIRRH-LNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQ--NG 257 (589)
Q Consensus 181 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g 257 (589)
+.++-.+++ .++-++.+.. ...-+..|. ++-.|.+.=..-++.. +++.. |-......++....- ..
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~s~dl~pdyYe-milfY~kki~~~d~~~-Y~k~~-peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESMSSDLYPDYYE-MILFYLKKIHAFDQRP-YEKFI-PEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhcccccChHHHH-HHHHHHHHHHHHhhch-HHhhC-cHHHHHHHHHHHHHhCCHh
Confidence 765444332 2232222211 011111122 2222222100000000 00000 000000001110000 00
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhccCchhhHHHHHHHHh-hcC----CCChhHHHHHHHHhHhcCCHHHH
Q 048179 258 LAGSTLELLMEMQSCGFEPDSVS-LVSALLACAQIGFLKLGKSIHGYTV-RRF----DFNLVLGTSVIDMYSKCGVPSCA 331 (589)
Q Consensus 258 ~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~-~~~----~~~~~~~~~l~~~~~~~g~~~~A 331 (589)
+..--..++..-...-+.|+... ...+...+.. +.+.+..+.+.+. ..+ +.-...+..++....+.++...|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 00111111111122223343221 1122222221 2233322222222 100 01123344555555566666666
Q ss_pred HHHHHhcC--CCChhH-------HHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHhcCCc-
Q 048179 332 RALFDQMQ--SRDLIS-------WNVIIASYG----IHGHGEEALSLFLQMIETMVKPDHS-TFASLL---SALSHSGL- 393 (589)
Q Consensus 332 ~~~~~~~~--~~~~~~-------~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll---~a~~~~g~- 393 (589)
...+.-+. +|+... -..+-+..+ ..-+...-+.+|++.....+ |.. ....|+ .-+-+.|.
T Consensus 318 ~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~ 395 (549)
T PF07079_consen 318 KQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQC 395 (549)
T ss_pred HHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCc
Confidence 66555433 222210 011111111 11122334445555544432 221 111122 22344444
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHH----HHHHHc---CCHH---HHHHHHHhcCCCC----ChhHHHHHHHH--HH
Q 048179 394 VEEGRYWFDLMVSKYKIQPTEKHYACMV----DLLARA---GEVE---EALKIVDSMSTEP----GLAVWVALLSG--CH 457 (589)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~ 457 (589)
-++|..+++.+.+- .+-|...-+.+. ..|..+ ..+. .-..++++....| +...-+.|..| ..
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 67778888777642 112222222211 112111 1111 2223344444333 44466777776 57
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.+|++.++.-...-+.++.| ++.+|..+|-+.....+++||.+++..+.
T Consensus 474 sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 89999999999888999999 99999999999999999999999998653
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.08 Score=47.05 Aligned_cols=231 Identities=10% Similarity=-0.000 Sum_probs=130.0
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hccCc-hhhHH-HHHHHHhhcCCCChhHHHHHHH
Q 048179 244 VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLAC-AQIGF-LKLGK-SIHGYTVRRFDFNLVLGTSVID 320 (589)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~-~~~a~-~~~~~~~~~~~~~~~~~~~l~~ 320 (589)
..|+.-+..+.+....++|..-+....+.. .||-. |...-..+ .+.|. +.-+. .+|..+. ..-++ -++.|..
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~-~~lgn--pqesLdR 144 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQ-QYLGN--PQESLDR 144 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHH-HhcCC--cHHHHHH
Confidence 456667777888888888876666554432 22210 00000000 01111 11111 2222222 11111 1244555
Q ss_pred HhHhcCCHHHHHHHHHhcCC--CCh--------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048179 321 MYSKCGVPSCARALFDQMQS--RDL--------ISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSH 390 (589)
Q Consensus 321 ~~~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~ 390 (589)
.+.-..-+++-...|+.-.. ..+ ..-+.++..+.-+|.+.-.+..+.+.++...+-++.....|.+.-.+
T Consensus 145 l~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ 224 (366)
T KOG2796|consen 145 LHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ 224 (366)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh
Confidence 54443333444444433221 122 23456667777788888888888888887666677777888888888
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhh-----HHHHHHHHHHcCCHHHHHHHHHhcCCC-C-ChhHHHHHHHHHHhcCCch
Q 048179 391 SGLVEEGRYWFDLMVSKYKIQPTEKH-----YACMVDLLARAGEVEEALKIVDSMSTE-P-GLAVWVALLSGCHNHKKFS 463 (589)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~ 463 (589)
.|+.+.|..+|+...+..+ +.+... .......|.-+.++.+|...+.++... | |+..-|+-.-+..-.|+..
T Consensus 225 ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 225 IGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred cccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 9999999999997665422 222222 223334556677888888888877542 3 3444444444455667888
Q ss_pred HHHHHHHHHhccCCCCc
Q 048179 464 IGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 464 ~a~~~~~~~~~~~p~~~ 480 (589)
.|.+.++.+.+..|...
T Consensus 304 DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHhccCCccc
Confidence 88888888888888644
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.06 E-value=0.039 Score=49.06 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=37.7
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCc---hhHHHHHHHHHhCCChHHHHH
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDDL---GIHALVSNFFAMEQKWEEVAG 501 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 501 (589)
..-|.+.|.+..|..-++.+++.-|+.+ .++..++..|.+.|..+.|..
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 4457889999999999999999999865 456778888999998885443
No 211
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.06 E-value=0.011 Score=45.18 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHhcCCCCChhh
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMV-KPDHSTFASLLSALSHSG--------LVEEGRYWFDLMVSKYKIQPTEKH 416 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~ 416 (589)
-...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. .+-..+.+++.|... +++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666777999999999999999999 899999999998876542 244677888888877 89999999
Q ss_pred HHHHHHHHHH
Q 048179 417 YACMVDLLAR 426 (589)
Q Consensus 417 ~~~l~~~~~~ 426 (589)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887754
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.17 Score=48.21 Aligned_cols=86 Identities=12% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHc
Q 048179 352 SYGIHGHGEEALSLFLQMIET---MVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARA 427 (589)
Q Consensus 352 ~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 427 (589)
-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.--+...+ +.|. ...|..-..++...
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHH
Confidence 345566666777776666542 2334444555555556666666666666655552 2222 22233333445555
Q ss_pred CCHHHHHHHHHhc
Q 048179 428 GEVEEALKIVDSM 440 (589)
Q Consensus 428 g~~~~A~~~~~~~ 440 (589)
++|++|++-+++.
T Consensus 335 e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 335 EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.96 E-value=0.022 Score=47.67 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+...++..+...|+++.|...+++++..+|-+...|..+..+|...|+..+|.+.++++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999999999999999999999999999998853
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.014 Score=55.29 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMS--TEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
.+..+.-++.+.+++.+|++..++.. .++|...+---..+|...|+++.|+..|+++++++|+|-.+...|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 56678889999999999999998863 2467888888899999999999999999999999999999999998887777
Q ss_pred CChHHH-HHHHHHHHh
Q 048179 494 QKWEEV-AGVRKTMRK 508 (589)
Q Consensus 494 g~~~~a-~~~~~~m~~ 508 (589)
.++++. .++|..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 666665 788888865
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.91 E-value=0.011 Score=46.14 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=73.3
Q ss_pred HHHHHcCCHHHHHHHHHhcC-C-CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc----hhHHHHHHHHHhCCC
Q 048179 422 DLLARAGEVEEALKIVDSMS-T-EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL----GIHALVSNFFAMEQK 495 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 495 (589)
-++...|+++.|++.|.+.. . +.....|+.-..+++-+|+.++|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45678889999999888752 2 34677899999999999999999999999998853322 457778899999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 048179 496 WEEVAGVRKTMRKSGM 511 (589)
Q Consensus 496 ~~~a~~~~~~m~~~g~ 511 (589)
-+.|..-|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999887765
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.22 Score=50.07 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=33.0
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcCC--CChh-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048179 317 SVIDMYSKCGVPSCARALFDQMQS--RDLI-----------SWNVIIASYGIHGHGEEALSLFLQMIET 372 (589)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 372 (589)
.++++....+++++|..+-++.++ +|+. -+.-.-.+|.+.|+-.+|..+++++...
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 455566666666666666666654 2321 1111224566777888888888776543
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.83 E-value=0.51 Score=45.56 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhh-HHH
Q 048179 342 DLISWNVIIASYGIHGHGEEALSLFLQMIETM-VKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKH-YAC 419 (589)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~ 419 (589)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+.+++.-++ .|+...|..+|+.-...+ ||... -..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 34567777777777777788888998888888 5677778888877665 478888888888866543 44333 345
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC--CCC--hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 420 MVDLLARAGEVEEALKIVDSMST--EPG--LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
.+.-+.+.++-+.|..+|+.... +.+ ...|..++.--...|+..-+..+-+++.++-|...
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 66777888999999999986532 122 55788888888888988888888888888888643
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.81 E-value=0.16 Score=45.07 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=74.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048179 349 IIASYGIHGHGEEALSLFLQMIETMVKPD--HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR 426 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 426 (589)
....+...|++++|+..|+++........ ......++.++.+.|+++.|...++...+.+.-.|... +...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 34455667777777777777776532111 23445566677777777777777777776654333321 1111111111
Q ss_pred cCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc-----------------hhHHHHHHH
Q 048179 427 AGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL-----------------GIHALVSNF 489 (589)
Q Consensus 427 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l~~~ 489 (589)
........ ......+....|...++.+++..|+++ ..-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000 011222334556666666666666654 233456888
Q ss_pred HHhCCChHHHHHHHHHHHh
Q 048179 490 FAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 490 ~~~~g~~~~a~~~~~~m~~ 508 (589)
|.+.|.|..|..-++.+.+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH
Confidence 9999999999999999886
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.062 Score=47.75 Aligned_cols=234 Identities=14% Similarity=0.019 Sum_probs=143.5
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH-hccCC-HHHHH-HHHHHHHHhCCCCChhhHHHH
Q 048179 41 VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKAC-VSLMD-LKMGE-EIWRKAVELGYGNDVFVGSSM 117 (589)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~-~~~a~-~~~~~~~~~g~~~~~~~~~~l 117 (589)
...|+.-+..+.+-..+++|..-++...+.+ .||-. |...=..+ .+.|. +.-+. -++..+.+. ...-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~----lgnpqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY----LGNPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh----cCCcHHHH
Confidence 3456777777777777777766665554432 12211 00000000 01121 12222 223333322 12235566
Q ss_pred HHHHHhCCChHHHHHHHHhcCCC--C--------cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048179 118 LNLYVKCGKMNEAMVAFEKMQRK--D--------LVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQAC 187 (589)
Q Consensus 118 i~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 187 (589)
.+.+.-..-+++-...|+.-..| . ....++++..+.-.|.+.-.+..+.+.++...+.++.....+.+..
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 66665444444444444433321 1 2345667777777888888899999999887777888888888889
Q ss_pred HccCCcHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhCCCh
Q 048179 188 ADLGDSRFGLSVHGYSIRRHLNLDV-----KVQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISGFAQNGLA 259 (589)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 259 (589)
.+.||.+.|...++.+.+..-..|. .+.......|.-.+++..|...|++++. .|++.-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 9999999999999987765433333 3333444456667889999999988876 4556666666666678899
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHH
Q 048179 260 GSTLELLMEMQSCGFEPDSVSLV 282 (589)
Q Consensus 260 ~~a~~~~~~m~~~g~~p~~~~~~ 282 (589)
.+|++.+..|.+. .|...+-.
T Consensus 303 ~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 303 KDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHhcc--CCccchhh
Confidence 9999999999886 45544443
No 220
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.78 E-value=0.0095 Score=51.52 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=57.6
Q ss_pred CCCcchHHHHHHHHHhC-----CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc----------------CCcHHHH
Q 048179 139 RKDLVCWSSMINGLVFN-----GQPREAVDAYKRMKKEGIDADEVVMMGLIQACADL----------------GDSRFGL 197 (589)
Q Consensus 139 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----------------~~~~~a~ 197 (589)
.+|-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+-+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34555555555555432 44555555666666666666667777666655432 1345677
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 048179 198 SVHGYSIRRHLNLDVKVQTSLVDMYAKTGH 227 (589)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (589)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888766554
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.77 E-value=0.03 Score=54.54 Aligned_cols=63 Identities=6% Similarity=-0.141 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
|+.+...+..+....++++.|...|++++.++|+.+.+|...+++..-.|+.++|.+.+++..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444444444444445555555555555555555555555555555555555555555433
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.74 E-value=0.019 Score=49.68 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=76.2
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-------------
Q 048179 332 RALFDQM--QSRDLISWNVIIASYGI-----HGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHS------------- 391 (589)
Q Consensus 332 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~------------- 391 (589)
...|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677788888887764 466777777889999999999999999999887652
Q ss_pred ---CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 392 ---GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 392 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
.+-+-|++++++|... |+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2356788999999875 999999999999999877765
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.74 E-value=0.32 Score=49.01 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=52.5
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHH
Q 048179 175 ADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFA 254 (589)
Q Consensus 175 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 254 (589)
|-...+.+-+..+...|.+++|.++- ++.....-|..|..-....=+++-|++.+.++..
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd-------------- 613 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRD-------------- 613 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhc--------------
Confidence 34444444455556666666554432 1112222344444433444444444444443322
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHH
Q 048179 255 QNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHG 302 (589)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 302 (589)
-.+-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|..+|.
T Consensus 614 --l~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 614 --LRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred --cHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 2233445556788888877887543 344566677777666554
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.67 Score=44.19 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchh
Q 048179 216 TSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLK 295 (589)
Q Consensus 216 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 295 (589)
+..+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-..+-.. +-.+..|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455566778888888888888778888888889999999998877665332 123477888888888888888
Q ss_pred hHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHH
Q 048179 296 LGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFD 336 (589)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 336 (589)
.|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 255 eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 877766552 12566889999999998877543
No 225
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.081 Score=48.41 Aligned_cols=104 Identities=12% Similarity=0.091 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHhcC-CCC-ChhHH
Q 048179 375 KPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAG---EVEEALKIVDSMS-TEP-GLAVW 449 (589)
Q Consensus 375 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~~~~ 449 (589)
+-|...|..|..+|...|+++.|...|....+ -.+++.+.+..+..++.... ...++.++|+++. .+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45677888888889989999999888888876 33455777777777665433 4567788888873 345 45566
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 450 VALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 450 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
..|...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6666678999999999999999998877554
No 226
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.52 E-value=0.017 Score=54.54 Aligned_cols=127 Identities=12% Similarity=0.052 Sum_probs=86.9
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHh---hcCC---CChhHHHHHHHHhHhcCCHHHHHHHHHhcC-------CCCh--h
Q 048179 280 SLVSALLACAQIGFLKLGKSIHGYTV---RRFD---FNLVLGTSVIDMYSKCGVPSCARALFDQMQ-------SRDL--I 344 (589)
Q Consensus 280 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~ 344 (589)
.|..+...|.-.|+++.+...|+.-. +.+. .....+..|.+++.-.|+++.|.+.|.... ++.+ .
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666788899888887655 2222 223556778888888999999988887543 2333 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIE----TM-VKPDHSTFASLLSALSHSGLVEEGRYWFDLMVS 406 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 406 (589)
+.-++...|.-...+++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455677778888888999888766432 11 122346788899999999999999887776543
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.45 E-value=0.0048 Score=45.04 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcC-------C-CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 048179 415 KHYACMVDLLARAGEVEEALKIVDSMS-------T-EPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKL 475 (589)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 475 (589)
.+++.+...|.+.|++++|++.+++.. . .|+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666666655541 0 122 445666777777777777777777777654
No 228
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.026 Score=47.81 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=71.0
Q ss_pred HHHHHcCCHHHHHHHHHhcCC--C-----CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC
Q 048179 422 DLLARAGEVEEALKIVDSMST--E-----PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ 494 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~--~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 494 (589)
.-+.+.|++++|..-|..... + -..+.|..-..+..+.+.++.|+....++++++|.+..++...+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 445567777777776665411 1 123455556667889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 048179 495 KWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 495 ~~~~a~~~~~~m~~~g~ 511 (589)
++++|++-++++.+..+
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999987543
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.29 Score=44.74 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=88.2
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHH---HHHHHHhcCCc
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVA---LLSGCHNHKKF 462 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~ 462 (589)
......|++.+|...|+..... .+-+...-..|+++|...|+.+.|..++..++.+-...-|.. -+....+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456779999999999988863 334466777889999999999999999999976533333333 23333444444
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 463 SIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
.+.. .+++-...+|+|...-..++..|...|+.++|.+.+-.+..+
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4333 344555778999999999999999999999999887666543
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.34 E-value=0.049 Score=43.68 Aligned_cols=97 Identities=11% Similarity=0.159 Sum_probs=60.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHS 391 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~ 391 (589)
..++.+++-++++.|+++....+++..-..++. +-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345556666666666666666665554322111 0000000 011234568888888888888888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048179 392 GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLL 424 (589)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 424 (589)
|++..|.++.+...+.|+++-+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888888777777777776543
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.21 E-value=0.08 Score=49.31 Aligned_cols=162 Identities=8% Similarity=-0.019 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhh
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIET-MVKPD---HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKH 416 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 416 (589)
+|..+..++-+.-++.+++.+-+.-... |..|- .....++..++...+.++++++.|+.+.+.-.-..| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444445555544555555444332221 22221 122334555566666677777777766543111111 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCC-----C-CC------hhHHHHHHHHHHhcCCchHHHHHHHHHhccC------CC
Q 048179 417 YACMVDLLARAGEVEEALKIVDSMST-----E-PG------LAVWVALLSGCHNHKKFSIGEKVAKKVLKLN------PD 478 (589)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~ 478 (589)
+..|...|.+..++++|.-+..+.-. . .| ..+...+.-+++..|....|.+.-+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 67777777777777777665544310 1 11 1122334456777777777777777766532 23
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 479 DLGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
.......++++|...|+.|.|..-++.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3445566778888888777776666554
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=1.9 Score=44.26 Aligned_cols=205 Identities=12% Similarity=0.022 Sum_probs=114.6
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHhcCC-CCcch------------HHHHHHHHHhCCCccHHHHHHHHHHHCCCC
Q 048179 108 GNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR-KDLVC------------WSSMINGLVFNGQPREAVDAYKRMKKEGID 174 (589)
Q Consensus 108 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 174 (589)
.|.+..|..|.......-.++-|+..|-+... +.+.. -.+=|.+| -|++++|.++|-+|-.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57788888888777777777777777766653 22211 11112222 4778888888877754422
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHH
Q 048179 175 ADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNL----DVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALI 250 (589)
Q Consensus 175 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 250 (589)
.+....+.|++-.+.++++. -|-.. -...++.+.+.+.....|+.|.+.+..-.. -...+
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ 829 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQI 829 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHH
Confidence 23445556666555544432 11111 124566777777777777777776655332 12245
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHH
Q 048179 251 SGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSC 330 (589)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (589)
.++.+..++++-..+-.. ++-+...+-.+..++...|.-++|.+.|-... .+ .+-+..+...+++.+
T Consensus 830 ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc------HHHHHHHHHHHHHHH
Confidence 555555555554433333 23444555666777777777777765443221 11 234556666677777
Q ss_pred HHHHHHhcCCCChh
Q 048179 331 ARALFDQMQSRDLI 344 (589)
Q Consensus 331 A~~~~~~~~~~~~~ 344 (589)
|.++-++..-|.+.
T Consensus 897 avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHhccchhHH
Confidence 77776665544443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.037 Score=53.89 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCCh----hHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSM-STEPGL----AVWVALLSGCHNHKKFSIGEKVAKKVLKL 475 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 475 (589)
...+..+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|++++|++.+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556777777777777788877777774 445653 34777777888888888888888888776
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.05 E-value=0.13 Score=41.79 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCC-C----ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCch---hHHHHHHHHHh
Q 048179 421 VDLLARAGEVEEALKIVDSMSTE-P----GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLG---IHALVSNFFAM 492 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 492 (589)
.....+.|++++|.+.|+.+..+ | ...+--.|+.++.+.+++++|...+++.+++.|.++. ++...|.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34445667777777777776432 2 2334556777788888888888888888888887653 34444555555
Q ss_pred CCC---------------hHHHHHHHHHHHh
Q 048179 493 EQK---------------WEEVAGVRKTMRK 508 (589)
Q Consensus 493 ~g~---------------~~~a~~~~~~m~~ 508 (589)
+.. ..+|...|+.+.+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 444 5566666666654
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.05 E-value=0.0093 Score=35.12 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45777777788888888888888888888775
No 236
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.02 E-value=0.98 Score=44.26 Aligned_cols=150 Identities=15% Similarity=0.017 Sum_probs=81.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hh
Q 048179 341 RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP---DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT--EK 415 (589)
Q Consensus 341 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 415 (589)
....+|..++..+.+.|+++.|...+.++...+..+ ++.....-....-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344578888888888999999988888887644211 2233333445556678888888888777762 11111 11
Q ss_pred hHHHHHHHHHHcCCHHHHHHH-HHhcCCCCChhHHHHHHHHHHhc------CCchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 416 HYACMVDLLARAGEVEEALKI-VDSMSTEPGLAVWVALLSGCHNH------KKFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
....+...+.. ..+..... ......+.-..++..+..-+... ++.+.+...++++.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012233333333333 78889999999999999998888888887
Q ss_pred HHHhC
Q 048179 489 FFAME 493 (589)
Q Consensus 489 ~~~~~ 493 (589)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76553
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.94 E-value=0.015 Score=34.12 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777777777777777777754
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.92 E-value=1.8 Score=42.01 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChhHHH-HHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYK-IQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPGLAVWV-ALLSGC 456 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~ 456 (589)
.|-..+.+..+..-++.|..+|-++.+. + +.+++..+++++.-+ ..|+..-|-.+|+-- ..-||...|. -.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555666667777889999999999887 5 667888888888766 467888999999874 3347766653 445556
Q ss_pred HhcCCchHHHHHHHHHhccCCC--CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPD--DLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..-++-+.|..+|+..++.-.+ -..+|..+..--..-|+...|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778888999999977743222 256777777777778888777777666654
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.91 E-value=0.51 Score=37.34 Aligned_cols=140 Identities=9% Similarity=0.075 Sum_probs=82.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEA 433 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 433 (589)
.-.|..++..++..+..... +..-++.++--....-+-+-..+.++.+-+-|.+.|-. ....++..|.+.|..
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~--- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKL--- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcch---
Confidence 34577777777777766542 34455555544444445555556666665444332221 122344455444443
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 434 LKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
.......+.....+|+-+.-.+++..+.+-+..+|..+..++.+|.+.|+..++-++++++=+.|++
T Consensus 86 ------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 ------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455677788888888888998888766668899999999999999999999999999988875
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.91 E-value=1.2 Score=40.06 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=78.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048179 350 IASYGIHGHGEEALSLFLQMIETMV--KPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA 427 (589)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 427 (589)
+..-.+.|++++|.+.|+.+....+ +-...+...++-++.+.+++++|....++..+.++-.||.. |...+.++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3445566777777777777765421 11234555666667777777777777777776665555543 333333333
Q ss_pred CCHHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc-----------------hhHHHHHHH
Q 048179 428 GEVEEALKIVDSMST-EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL-----------------GIHALVSNF 489 (589)
Q Consensus 428 g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l~~~ 489 (589)
.|..+.. ..|. .-...|...|+.++..-|++. ..-...++.
T Consensus 118 --------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0111 112234444455555555432 334467889
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 048179 490 FAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 490 ~~~~g~~~~a~~~~~~m~~~ 509 (589)
|.+.|.|..|..-++.|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999874
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.57 Score=41.44 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC----CCChhhHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKI----QPTEKHYACM 420 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l 420 (589)
.++--...|..+|.++.|-..+++.-+. ...-++++|++++++....... ..-.+.+...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3444556677777777666666554321 1123344444444443322111 1113455666
Q ss_pred HHHHHHcCCHHHHHHHHHhcCC-------CCCh-hHHHHHHHHHHhcCCchHHHHHHHHHhcc----CCCCchhHHHHHH
Q 048179 421 VDLLARAGEVEEALKIVDSMST-------EPGL-AVWVALLSGCHNHKKFSIGEKVAKKVLKL----NPDDLGIHALVSN 488 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~-------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~ 488 (589)
.+.|.+..++++|-..+.+-.. -|+. ..+.+.+-.+....|+..|+..++.--++ .|++..+...|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 6778888888887776655421 1222 23455555666777899999998886543 3666777777766
Q ss_pred HHHhCCChHHHHHHHH
Q 048179 489 FFAMEQKWEEVAGVRK 504 (589)
Q Consensus 489 ~~~~~g~~~~a~~~~~ 504 (589)
.| ..|+.|++.++..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 64 4578888776654
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.06 Score=48.59 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=32.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 452 LLSGCHNHKKFSIGEKVAKKVLKLNPD---DLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 452 l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
|+.++...|+++.|..+|..+.+-.|+ -|..+..|+.+..+.|+.++|..++++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455555566666666666655554433 334566666666666666666666666554
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.097 Score=47.28 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHH
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMVKP--DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVD 422 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 422 (589)
|+.-+.. .+.|++.+|...|...++....- ....+..|..++...|++++|..+|..+.+.++-.|. ++.+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5544443 34455777777777766643110 1123445666677777777777777777665554444 355556666
Q ss_pred HHHHcCCHHHHHHHHHhcC
Q 048179 423 LLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~ 441 (589)
...+.|+.++|...|++..
T Consensus 224 ~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 6666666666666666553
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.64 E-value=0.14 Score=42.81 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCCChhhH
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVS----KYKIQPTEKHY 417 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 417 (589)
...++..+...|++++|+.+++++.... +-|...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445566667777777777777777654 44566777777777777777777777766533 34666665543
No 245
>PRK15331 chaperone protein SicA; Provisional
Probab=95.55 E-value=0.38 Score=40.09 Aligned_cols=85 Identities=7% Similarity=-0.062 Sum_probs=39.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEA 433 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 433 (589)
...|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|...|..+..- . .-|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34555555555555544432 112333344444444455555555555554332 1 12222222344555555555555
Q ss_pred HHHHHhcC
Q 048179 434 LKIVDSMS 441 (589)
Q Consensus 434 ~~~~~~~~ 441 (589)
+.-|+...
T Consensus 125 ~~~f~~a~ 132 (165)
T PRK15331 125 RQCFELVN 132 (165)
T ss_pred HHHHHHHH
Confidence 55555443
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=0.91 Score=46.19 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHHcCCHHHHHHHHHhcCC-C-----CChhHHHHHHHHHHhcCCch
Q 048179 391 SGLVEEGRYWFDLMVSKYKIQPTEKHYA-CMVDLLARAGEVEEALKIVDSMST-E-----PGLAVWVALLSGCHNHKKFS 463 (589)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~~~~~ 463 (589)
....+.|.++++.+.+.| |+...|. --.+.+...|++++|++.|++... + -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 456778888888888654 6654443 334667778888888888887532 1 22344556667778888999
Q ss_pred HHHHHHHHHhccCCCCchhH-HHHHHHHHhCCCh-------HHHHHHHHHHHh
Q 048179 464 IGEKVAKKVLKLNPDDLGIH-ALVSNFFAMEQKW-------EEVAGVRKTMRK 508 (589)
Q Consensus 464 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~m~~ 508 (589)
+|.+.+.++.+...-+...| ...+-+|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999988766544444 3456667788888 888888887754
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.49 E-value=1.8 Score=38.94 Aligned_cols=195 Identities=19% Similarity=0.112 Sum_probs=126.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQS-----RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLS 386 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 386 (589)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34445566666667777777666665432 3334555556666667777778877777766433331 12222222
Q ss_pred -HHhcCCcHHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCC--hhHHHHHHHHHHhcC
Q 048179 387 -ALSHSGLVEEGRYWFDLMVSKYKI--QPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPG--LAVWVALLSGCHNHK 460 (589)
Q Consensus 387 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~--~~~~~~l~~~~~~~~ 460 (589)
++...|+++.+...++..... .- ......+......+...++.++|...+.+... .++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 677778888888888877431 11 11233344444456677888888888877633 233 566777777788888
Q ss_pred CchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 461 KFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 461 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+++.|...+.++.+..|.....+..++..+...|.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888887666677777777777778888888777665
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.45 E-value=0.51 Score=38.39 Aligned_cols=112 Identities=15% Similarity=0.067 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCH
Q 048179 353 YGIHGHGEEALSLFLQMIETMVK--PDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEV 430 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 430 (589)
..+.|++++|.+.|+.+...-.. -....-..++.++.+.+++++|...+++..+.+.-.|++ .|...+.++..-...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHh
Confidence 34556666666666665544111 112344455556666666666666666665543333332 233333333322222
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 431 EEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 431 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
+..+.-+- .. =+..+....|...|+++++.-|++.
T Consensus 99 ~~~~~~~~--~~-------------drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 99 EGSLQSFF--RS-------------DRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhHHhhhc--cc-------------ccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 21111111 00 1112235578888888988889765
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=0.84 Score=44.89 Aligned_cols=143 Identities=9% Similarity=0.075 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhc---------CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048179 359 GEEALSLFLQMIE-TMVKPDH-STFASLLSALSH---------SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA 427 (589)
Q Consensus 359 ~~~A~~~~~~m~~-~~~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 427 (589)
.+.|+.+|.+... ....|+. ..|..+..++.. ..+..+|.+.-+...+ --+.|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4667778888772 2245553 344444333221 2345667777777775 2344567777788888888
Q ss_pred CCHHHHHHHHHhcC-CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH--HHHHHHhCCChHHHHHHH
Q 048179 428 GEVEEALKIVDSMS-TEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL--VSNFFAMEQKWEEVAGVR 503 (589)
Q Consensus 428 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~ 503 (589)
|+++.|..+|++.. ..|| ..+|......+.-.|+.++|.+.++++++++|....+-.. ..+.|...+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 88999999999974 3565 5577777778889999999999999999999976554443 344566554 67777776
Q ss_pred H
Q 048179 504 K 504 (589)
Q Consensus 504 ~ 504 (589)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.42 E-value=5.3 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHhhc
Q 048179 215 QTSLVDMYAKTG--HLDLASHVFKNM 238 (589)
Q Consensus 215 ~~~l~~~~~~~g--~~~~A~~~~~~~ 238 (589)
.-.++..|.+.+ .++.|.....++
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l 818 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKEL 818 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334555555554 444444444443
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.39 E-value=2 Score=38.71 Aligned_cols=192 Identities=17% Similarity=0.119 Sum_probs=124.1
Q ss_pred HHHHhccCchhhHHHHHHHHhh--cCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CCh-hHHHHHHH-HHHhcCC
Q 048179 285 LLACAQIGFLKLGKSIHGYTVR--RFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--RDL-ISWNVIIA-SYGIHGH 358 (589)
Q Consensus 285 l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~ 358 (589)
...+...+....+...+..... ........+......+...+....+...+..... ++. ........ .+...|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD 145 (291)
T ss_pred HHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC
Confidence 3333333444444333333331 2333344445555566666667777777776654 221 22333333 6788899
Q ss_pred HHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHH
Q 048179 359 GEEALSLFLQMIETMV--KPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP-TEKHYACMVDLLARAGEVEEALK 435 (589)
Q Consensus 359 ~~~A~~~~~~m~~~~~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 435 (589)
++.|...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...+++++|..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHH
Confidence 9999999998855221 112334444445567788999999999998863 333 36778888889999999999999
Q ss_pred HHHhcCC-CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 436 IVDSMST-EPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 436 ~~~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
.+..... .|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9988743 344 455666666666777899999999999999886
No 252
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.35 E-value=4.7 Score=42.82 Aligned_cols=113 Identities=11% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048179 357 GHGEEALSLFLQMIETM-VKPDHS--TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEA 433 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 433 (589)
.+.+.|..++.+..... +.+... ....+.......+...++...++..... ..+......-+....+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566666666553322 222221 2222222222222234444444443321 12333334444444566666666
Q ss_pred HHHHHhcCCC-CChhHHHH-HHHHHHhcCCchHHHHHHHHH
Q 048179 434 LKIVDSMSTE-PGLAVWVA-LLSGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 434 ~~~~~~~~~~-p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~ 472 (589)
...+..|+.. .+..-|.- +..+....|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666431 11122222 233444466666666666665
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=2 Score=39.48 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=99.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCH
Q 048179 351 ASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEV 430 (589)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 430 (589)
......|++.+|..+|+...... +-+...-..+..++...|+++.|..++..+-.. .-.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34567788888888888887753 223455567778888888888888888876542 1111112223345666666666
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccC--CCCchhHHHHHHHHHhCCChHHH-HHHHHHH
Q 048179 431 EEALKIVDSMSTEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN--PDDLGIHALVSNFFAMEQKWEEV-AGVRKTM 506 (589)
Q Consensus 431 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 506 (589)
.+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++.+ -++...-..+..++...|.-+.+ .+.+++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66666666665566 55566667777888888888888877777554 34666677777777777744443 3344433
No 254
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.17 E-value=4.2 Score=41.25 Aligned_cols=121 Identities=9% Similarity=0.053 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHH
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSG 455 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~ 455 (589)
..+|...+.--...|+.+...-.|+.+.- .+.--...|--.++-....|+.+-|..++..... .|+......+-.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34666666666777777777777777654 2222244555556666666777777776665422 2333322222222
Q ss_pred -HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHH
Q 048179 456 -CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVA 500 (589)
Q Consensus 456 -~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 500 (589)
+-..||++.|..+++++.+--|.....-..-+.+..+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 455678888888888887555766655555666677777777776
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.14 E-value=0.39 Score=48.07 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=82.0
Q ss_pred HHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 351 ASYGIHGHGEEALSLFLQ-MIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~-m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
......++++++.+..+. -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCC
Confidence 344556777777666541 1111122 33466677777788888888777554332 2366778888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 430 VEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 430 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
++.|.++.++.. +...|..|......+|+++.|++++++.-. +..|.-+|.-.|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888776644 677888888888888888888888887743 455667777777777766666666554
Q ss_pred C
Q 048179 510 G 510 (589)
Q Consensus 510 g 510 (589)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.13 E-value=1.6 Score=36.05 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048179 348 VIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA 427 (589)
Q Consensus 348 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 427 (589)
.++..+...+........++.+...+ ..+...++.++..+++.+ ......+++. .++.......++.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 34444444555555566665555554 234445555555555432 2223333331 01222233345555555
Q ss_pred CCHHHHHHHHHhcC
Q 048179 428 GEVEEALKIVDSMS 441 (589)
Q Consensus 428 g~~~~A~~~~~~~~ 441 (589)
+.++++.-++.++.
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 55555555555554
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.99 E-value=0.072 Score=41.81 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=52.3
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.-+....|+.+.|++.|.+++.+-|.++++|+.-+..|.-+|+.++|++-+++..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999998876
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.42 Score=44.29 Aligned_cols=159 Identities=12% Similarity=-0.023 Sum_probs=114.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHHcCCH
Q 048179 355 IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYA----CMVDLLARAGEV 430 (589)
Q Consensus 355 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~ 430 (589)
-+|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 467888888889888876 466777777778889999999988888888875 3356654443 344556689999
Q ss_pred HHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC----chhHHHHHHHHHhCCChHHHHHHHH
Q 048179 431 EEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD----LGIHALVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 431 ~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 504 (589)
++|++.-++... +.|.-+-.++.......|+..++.+...+--..-.+. .-.|-..+..+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999888743 3455556667777788899999988877764322211 2334456667778899999999998
Q ss_pred HHHhCCCccCCc
Q 048179 505 TMRKSGMKKVPG 516 (589)
Q Consensus 505 ~m~~~g~~~~~~ 516 (589)
+=.-....++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766555655555
No 259
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.77 E-value=1.4 Score=36.65 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=62.4
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCc
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKYKIQPTE-KHYACMVDLLARAGEVEEALKIVDSMSTE-PGLAVWVALLSGCHNHKKF 462 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~ 462 (589)
+..-...++.+++..++..+. -+.|.. ..-..-...+.+.|+|.+|+.+|+++... |....-..|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 344456778999999998887 445663 23333456678899999999999998654 5566667777777666555
Q ss_pred hHHHHHHHHHhccCC
Q 048179 463 SIGEKVAKKVLKLNP 477 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p 477 (589)
..=.....++++-.|
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 555666677777665
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.71 E-value=3.8 Score=38.50 Aligned_cols=17 Identities=6% Similarity=-0.060 Sum_probs=10.1
Q ss_pred HHhcCCchHHHHHHHHH
Q 048179 456 CHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~ 472 (589)
+.+.++++.|.+.++-+
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45556666666666543
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=6.4 Score=41.05 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 048179 377 DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGC 456 (589)
Q Consensus 377 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 456 (589)
...+.+--+.-+...|...+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+++.. +.-|.-...+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHH
Confidence 33455555667778888899888766553 37888888888999999999998888877653 56677788899
Q ss_pred HhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
.+.|+.++|.+.+-+.-.+. ....+|.+.|++.+|.++--+
T Consensus 755 ~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 99999999998877663322 567889999999999886543
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.67 E-value=4.4 Score=39.31 Aligned_cols=161 Identities=12% Similarity=0.036 Sum_probs=103.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048179 348 VIIASYGIHGHGEEALSLFLQMIETM---VKPDHSTFASLLSALSH---SGLVEEGRYWFDLMVSKYKIQPTEKHYACMV 421 (589)
Q Consensus 348 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 421 (589)
.++-+|....+++..+++.+.|.... +.-....-....-|+.+ .|+.++|++++..+... .-.+++++|..++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 44556888999999999999988641 11112222233445566 89999999999995554 6667888998888
Q ss_pred HHHHH---------cCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCCc-h---HHHHHH---HHHh-cc---C-CCC
Q 048179 422 DLLAR---------AGEVEEALKIVDSM-STEPGLAVWVALLSGCHNHKKF-S---IGEKVA---KKVL-KL---N-PDD 479 (589)
Q Consensus 422 ~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~-~---~a~~~~---~~~~-~~---~-p~~ 479 (589)
..|-+ ...+++|...|.+. ..+||..+--.+.......|.. + +..++. ..++ +. + -.+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 77642 23588899999886 4456654433333333333322 1 222222 1111 11 1 234
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 480 LGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
...+..+..+..-.|+.++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 556667888899999999999999999864
No 263
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.55 E-value=0.082 Score=31.53 Aligned_cols=26 Identities=4% Similarity=0.066 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 482 IHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 482 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
+|..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999998854
No 264
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.38 Score=43.42 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=82.9
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----------
Q 048179 330 CARALFDQMQ--SRDLISWNVIIASYGIH-----GHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSG---------- 392 (589)
Q Consensus 330 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g---------- 392 (589)
..+..|..+. ++|-.+|-+++..+..+ +.++=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 57888888888877653 456666677899999999999999999998876532
Q ss_pred ------cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHH-HHHHHHHhc
Q 048179 393 ------LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVE-EALKIVDSM 440 (589)
Q Consensus 393 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 440 (589)
.-+-++.++++|... |+.||.++-..|+.++++.+-.- +..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234578899999875 99999999999999999988643 333333333
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.47 E-value=4.5 Score=38.27 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHhCCChHHHH
Q 048179 481 GIHALVSNFFAMEQKWEEVA 500 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~ 500 (589)
..+..++.+|...|.-++-.
T Consensus 332 K~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 332 KLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHHHHHHHHHhccchhHHH
Confidence 35667888888877666543
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.44 E-value=3 Score=41.33 Aligned_cols=102 Identities=11% Similarity=0.091 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChh--HHHHHHH
Q 048179 379 STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLA--VWVALLS 454 (589)
Q Consensus 379 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~--~~~~l~~ 454 (589)
.+-..+..++-+.|..++|.+.|+++.+.+....+......|+..+...+.+.++..++.+-.. -|... .|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3334566777788999999999999987543323355667799999999999999999988743 24433 4555443
Q ss_pred HHHhcCCc---------------hHHHHHHHHHhccCCCCc
Q 048179 455 GCHNHKKF---------------SIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 455 ~~~~~~~~---------------~~a~~~~~~~~~~~p~~~ 480 (589)
-.+..+|. ..|.+++.++.+.+|.-+
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 34433331 235678888888887544
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.40 E-value=0.88 Score=45.60 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=95.2
Q ss_pred HHHcCCCchhHHHHHH--HHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCh
Q 048179 50 AYSRKESPFEVLGLYN--QMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKM 127 (589)
Q Consensus 50 ~~~~~g~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 127 (589)
...-+++++++.+..+ .+.. .+ +..-.+.+++-+-+.|..+.|+++...- ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 3455678888766664 2221 11 2344667777777888888887765432 2345566778999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhc
Q 048179 128 NEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRH 207 (589)
Q Consensus 128 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 207 (589)
+.|.++-++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.+...|+.+.-.++.......|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 98888766665 556899999999999999999888887643 5566666777788777777776666555
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048179 208 LNLDVKVQTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
. +|....++.-.|+.++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 34444445556777776666554
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.30 E-value=0.059 Score=31.55 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777764
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.25 E-value=2.6 Score=34.69 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=36.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccH
Q 048179 81 VALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPRE 160 (589)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (589)
.++..+...+.......+++.+.+.+ ..+...++.++..|++.++ ++..+.++. ..+......+++.|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444445555555555555444 2344455555555554322 222233321 1222333334444444444444
Q ss_pred HHHHHHHH
Q 048179 161 AVDAYKRM 168 (589)
Q Consensus 161 A~~~~~~m 168 (589)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 44444443
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.19 E-value=16 Score=43.64 Aligned_cols=280 Identities=10% Similarity=-0.012 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh-cCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048179 214 VQTSLVDMYAKTGHLDLASHVFKN-MSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIG 292 (589)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 292 (589)
.+..+...|+.-+++|...-+... ...++ ...-|......|++..|...|+.+.+.+ ++...+++.++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 334444466666666665555442 22221 2223334456677777777777777653 233555665665555555
Q ss_pred chhhHHHHHHHHhhcCCCChhHHHHH-HHHhHhcCCHHHHHHHHHhcCCCChhHHHHH-H-HHHHhcCC--HHHHHHHHH
Q 048179 293 FLKLGKSIHGYTVRRFDFNLVLGTSV-IDMYSKCGVPSCARALFDQMQSRDLISWNVI-I-ASYGIHGH--GEEALSLFL 367 (589)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~ 367 (589)
.++......+......++...-++++ +.+--+.++++....... +.+..+|... + ....+..+ .-.-.+..+
T Consensus 1498 ~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~ 1574 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIE 1574 (2382)
T ss_pred chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHH
Confidence 55555544433332222222222222 333345566666655554 4555566554 2 22222221 111112333
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH----------HHhcCCCCCh------hhHHHHHHHHHHcCCHH
Q 048179 368 QMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLM----------VSKYKIQPTE------KHYACMVDLLARAGEVE 431 (589)
Q Consensus 368 ~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~----------~~~~~~~p~~------~~~~~l~~~~~~~g~~~ 431 (589)
.+++.-+.| +.+|+..|.+..+.++.-.+ ....++.++. ..|..-+..-....+..
T Consensus 1575 ~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1575 NSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred HHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHH
Confidence 333221111 22233322222222111111 1111233332 22222222111111122
Q ss_pred HHHHHHHhc----CCCC-----ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHH
Q 048179 432 EALKIVDSM----STEP-----GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 432 ~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
+-+--+++. ..+| -..+|-.....++..|.++.|....-++.+.. -+.++...+..+...|+-..|+.+
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~ 1724 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSV 1724 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHH
Confidence 222112221 1122 35689999999999999999999998888877 456788899999999999999999
Q ss_pred HHHHHhCC
Q 048179 503 RKTMRKSG 510 (589)
Q Consensus 503 ~~~m~~~g 510 (589)
+++-.+..
T Consensus 1725 Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1725 LQEILSKN 1732 (2382)
T ss_pred HHHHHHhh
Confidence 99887543
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.12 E-value=4.3 Score=36.67 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=101.9
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHh---
Q 048179 320 DMYSKCGVPSCARALFDQMQSRD------LISWNVIIASYGIHGHGEEALSLFLQMIETMV-KPDHSTFASLLSALS--- 389 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~a~~--- 389 (589)
..-.+.|++++|.+.|+.+.... ..+--.++-++.+.+++++|+..+++....-. .|| .-|...|.+.+
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhc
Confidence 34457899999999999997632 23444556778899999999999999887633 333 33444444433
Q ss_pred cC----CcH---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHH--HHHHHHHHhcC
Q 048179 390 HS----GLV---EEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVW--VALLSGCHNHK 460 (589)
Q Consensus 390 ~~----g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~~ 460 (589)
.. .+. ..|..-|+....+| ||..-- .+|..-+..+. |.... ..+..-|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~Ya-------------~dA~~~i~~~~---d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRY---PNSRYA-------------PDAKARIVKLN---DALAGHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHC---CCCcch-------------hhHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 21 222 34444555555443 442210 11111111100 11111 12345578888
Q ss_pred CchHHHHHHHHHhccCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 461 KFSIGEKVAKKVLKLNPDDL---GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 461 ~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+.-|..-++++++--|+.+ ..+..+..+|.+.|..++|.+.-+-+..
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 88888888888887766544 4556667778889988888887766543
No 272
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.11 E-value=0.87 Score=36.58 Aligned_cols=96 Identities=21% Similarity=0.082 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHh--cCCCChhHHHHHHHHHH
Q 048179 277 DSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQ--MQSRDLISWNVIIASYG 354 (589)
Q Consensus 277 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~ 354 (589)
|..++..++.++++.|+++....+.+..- |+..+... ..+. +.. -..|+..+..+++.+|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W-gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW-GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc-CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999988886543 22211100 0000 111 11378888899999999
Q ss_pred hcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 048179 355 IHGHGEEALSLFLQMIET-MVKPDHSTFASLLSALS 389 (589)
Q Consensus 355 ~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~a~~ 389 (589)
.+|++..|+++.+...+. +++.+..++..|+.-+.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999998887753 66666778888876544
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.10 E-value=3.7 Score=35.86 Aligned_cols=178 Identities=13% Similarity=0.051 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHhcC--CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 048179 325 CGVPSCARALFDQMQ--SRD-LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWF 401 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 401 (589)
.|-.+-|+--|.+.. .|+ +..||-+.--+...|+++.|.+.|+...+....- ..++..-.-++.-.|++.-|.+-|
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHH
Confidence 344444444444433 233 3456666666667777777777777766653222 222222222344457777776655
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--
Q 048179 402 DLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD-- 479 (589)
Q Consensus 402 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-- 479 (589)
-..-+...-.|-...|--+ -.+.-++.+|..-+.+--...|..-|...+-.+.- |+.. -+.+++++.+-..++
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTS 231 (297)
T ss_pred HHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHH
Confidence 5544321222222222222 22334555555433332223344556555544322 2211 123344444332232
Q ss_pred -----chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 480 -----LGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 480 -----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..+|.-|+.-|...|+.++|..+|+....
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35788899999999999999999998775
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.90 E-value=3.5 Score=42.01 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhcCCHHHHHHH
Q 048179 293 FLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSR-------DLISWNVIIASYGIHGHGEEALSL 365 (589)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~ 365 (589)
..+.+.+++..+....|.+....-.-.+.+...|++++|.+.|++.... ....+--+.-.+.-..++++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 3344444444444444444444444455666677777777777754421 111222233445566777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH-hcCCcH-------HHHHHHHHHHH
Q 048179 366 FLQMIETMVKPDHSTFASLLSAL-SHSGLV-------EEGRYWFDLMV 405 (589)
Q Consensus 366 ~~~m~~~~~~p~~~t~~~ll~a~-~~~g~~-------~~a~~~~~~~~ 405 (589)
|.++.+.. .-...+|..+..+| ...|+. ++|.++|.+..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77777643 22233343333332 344555 55666665543
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.86 E-value=0.15 Score=47.23 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=79.3
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCC
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKYKIQP-TEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKK 461 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~ 461 (589)
..-|.++|.+++|+..|..... +.| +...+..-..+|.+..++..|..-.+.... +.-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 5668899999999999998774 445 777888888899999999988877766532 1123345555566667789
Q ss_pred chHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHH
Q 048179 462 FSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 462 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
..+|.+-++.+++++|++... -..|.+..-..|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL----KKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH----HHHHHHhcchHhhhHH
Confidence 999999999999999986543 3344444444444433
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.81 E-value=1.8 Score=42.83 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CchhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPD--DLGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
+-..|..++++.|+.++|++.++.+++..|. +-.++..|...+...+.+.++..++.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3344555566666666666666666655543 3445566666666666666666666554
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.73 E-value=0.44 Score=43.03 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=69.8
Q ss_pred HHHHHHhcC--CCCcchHHHHHHHHHhC-----CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-----------
Q 048179 130 AMVAFEKMQ--RKDLVCWSSMINGLVFN-----GQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLG----------- 191 (589)
Q Consensus 130 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 191 (589)
.+..|.... ++|-.+|-+.+..|... +..+-.-..++.|.+.|+.-|..+|+.||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 56777777777777543 455666667788888899999999998888765432
Q ss_pred -----CcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 048179 192 -----DSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGH 227 (589)
Q Consensus 192 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (589)
+-+-+..++++|...|+-||..+-..|++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234566777777778887887777777777776654
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.63 E-value=0.091 Score=31.31 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKL 475 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 475 (589)
+|..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=2.6 Score=39.34 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=107.9
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhcCCcHHH
Q 048179 324 KCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFA----SLLSALSHSGLVEE 396 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~----~ll~a~~~~g~~~~ 396 (589)
-.|+..+|-..++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45777777777777765 47788888888999999999999999888764 345543333 23344568899999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhcCCchHHHHHH
Q 048179 397 GRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPG-------LAVWVALLSGCHNHKKFSIGEKVA 469 (589)
Q Consensus 397 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~ 469 (589)
|.+.-++..+- -+-|...-.++...+.-.|+..++.++..+-...-+ .--|.. .-.+...+.++.|+++|
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHH
Confidence 99998887742 123355556778888999999999999988653211 111222 22244558999999999
Q ss_pred HHHh--ccCCCCchh
Q 048179 470 KKVL--KLNPDDLGI 482 (589)
Q Consensus 470 ~~~~--~~~p~~~~~ 482 (589)
.+-+ +++.+++.+
T Consensus 271 D~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHhhccchhh
Confidence 7655 566767643
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=12 Score=39.70 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=37.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 420 MVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
++..+....+.+++..+.+..... ++..|..++..+.+.+..+...+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 455666777788888887777644 67788888888888877666666555554
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.42 E-value=3.1 Score=35.15 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=85.2
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC--ChHHHHHHHHhcC
Q 048179 61 LGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCG--KMNEAMVAFEKMQ 138 (589)
Q Consensus 61 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 138 (589)
++.++.+.+.+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556667778899999999999999999988765544 444555555544443332222211 1233445555543
Q ss_pred CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 048179 139 RKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRR 206 (589)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 206 (589)
..+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..++.....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677888889999999999998775332 2233355677777777766666666655554
No 282
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=13 Score=39.60 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=63.2
Q ss_pred HHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHH----HHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 048179 15 RIIALYGGKNDIVSARKLFEELPLRGVDTYNSIII----AYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLM 90 (589)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 90 (589)
.-+.+..+..-++.|..+-..-. .|...-..+.+ -+.+.|++++|...|-+-... +.| ..+++-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 34555666666777777665533 22222222222 344667777777766554322 122 23444555555
Q ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcC
Q 048179 91 DLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQ 138 (589)
Q Consensus 91 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 138 (589)
+...-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 566666666666666654 34444566677776666665555554444
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.34 E-value=0.18 Score=31.67 Aligned_cols=32 Identities=3% Similarity=-0.097 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 480 LGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
|..+..++.+|.+.|++++|.++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999987443
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.01 E-value=0.7 Score=38.40 Aligned_cols=50 Identities=8% Similarity=0.158 Sum_probs=23.5
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
..++.+.++.++..+.-+.|..+..-..-++++...|+|.+|..+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444443
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.96 E-value=18 Score=40.18 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=57.7
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRY 399 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~ 399 (589)
+.--+.|.+++|..++..-.+.-...|.+...-+...+.+++|.-.|+..=+ ..-.+.++..+|+|.+|..
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHH
Confidence 3334455555555554322222223344444444555666666655543211 1234556667777777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTE 443 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (589)
+..++.. +-.--..+-..|+..+...++.-+|-++..+....
T Consensus 987 ~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 987 LAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 7665542 11111222345666677777777777776665443
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.87 E-value=8.1 Score=37.75 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=56.7
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 444 PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP----DDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 444 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
....+|..+...+++.|+++.|...+.++....+ ..+......+......|+.++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999998652 2466777789999999999999999988876333
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.83 E-value=0.21 Score=29.06 Aligned_cols=29 Identities=7% Similarity=-0.022 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999998764
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.68 E-value=0.57 Score=38.16 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=37.1
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
..++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36667777777777777777777777777777777777777777777666544
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.66 E-value=0.59 Score=43.07 Aligned_cols=61 Identities=8% Similarity=0.086 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
++..++..+...|+++.+...+++++..+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666677777777777777777777777777777777777777777777777777654
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.59 E-value=7.8 Score=35.10 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=135.6
Q ss_pred cCCHHHHHHHHhhcCCC----C---eehHHHHHHHHHhCCChhHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHhccC
Q 048179 225 TGHLDLASHVFKNMSRI----N---IVTWGALISGFAQNGLAGSTLELLMEMQSC---GF--EPDSVSLVSALLACAQIG 292 (589)
Q Consensus 225 ~g~~~~A~~~~~~~~~~----~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~~ 292 (589)
..++++|..-|+++.+. . ..+.-.+|..+.+.+++++.++.+.+|..- .+ .-+..+.++++...+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34667777777666431 1 123344677788888888888888877531 11 234456677777666666
Q ss_pred chhhHHHHHHHHh------hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--------C-------ChhHHHHHHH
Q 048179 293 FLKLGKSIHGYTV------RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--------R-------DLISWNVIIA 351 (589)
Q Consensus 293 ~~~~a~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~ 351 (589)
+.+.-..+++... ..-..-..+-+-|...|...|.+....+++.++.. . -...|..=|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6666665555433 11111223335667777777888877777776642 1 1245666788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH-----hcCCcHHHHHHHHHHHHHhcCCCCChh-----hHHHH
Q 048179 352 SYGIHGHGEEALSLFLQMIETMV-KPDHSTFASLLSAL-----SHSGLVEEGRYWFDLMVSKYKIQPTEK-----HYACM 420 (589)
Q Consensus 352 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~a~-----~~~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~l 420 (589)
.|...++-..-..++++...-.. -|.+. ...+++-| .+.|.+++|..-|=++-+.|.-..++. -|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 88888887777788887654322 23333 34555555 356888887654444444333222222 24455
Q ss_pred HHHHHHcCCHHHHHHHHHhc-----CCCCChhHHHHHHHHHHhcCCchHHHHH
Q 048179 421 VDLLARAGEVEEALKIVDSM-----STEPGLAVWVALLSGCHNHKKFSIGEKV 468 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 468 (589)
..++.+.|-- -|+.- ...|...+.+.|+.+|..+ +..+-+++
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 6666665521 11111 1235666788899888654 44333333
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.39 E-value=0.26 Score=28.71 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
..|..+|.+|...|++++|...++++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999988643
No 292
>PRK10941 hypothetical protein; Provisional
Probab=92.32 E-value=0.99 Score=41.72 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.-.|.+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35667778999999999999999999999999999999999999999999999998887653
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.20 E-value=0.54 Score=43.67 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc-
Q 048179 350 IASYGIHGHGEEALSLFLQMIETMVKP-DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA- 427 (589)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 427 (589)
..-|.++|.+++|+..|.+-+.. .| |++++..-..+|.+...+..|..-...+... | ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 56789999999999999887664 56 8888988889999998888887766665532 1 2344555554
Q ss_pred ------CCHHHHHHHHHhc-CCCCChh
Q 048179 428 ------GEVEEALKIVDSM-STEPGLA 447 (589)
Q Consensus 428 ------g~~~~A~~~~~~~-~~~p~~~ 447 (589)
|...+|.+-++.. ..+|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 5555555555543 3356643
No 294
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.15 E-value=1.1 Score=29.33 Aligned_cols=50 Identities=2% Similarity=-0.124 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 048179 482 IHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMRAIS 557 (589)
Q Consensus 482 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g 557 (589)
.+..++..+.+.|++++|.+..+.+.+ ..|.+.+..+....+..+|++.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 456788889999999999999999986 35667777676677777777766
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.89 E-value=4.1 Score=34.20 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=58.7
Q ss_pred hcCCHHHHHHHHhhcCCCCeehHHHHH-----HHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHH--HHHHhccCchh
Q 048179 224 KTGHLDLASHVFKNMSRINIVTWGALI-----SGFAQNGLAGSTLELLMEMQSCGFEPDSV-SLVSA--LLACAQIGFLK 295 (589)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~~~~~ 295 (589)
+.+..++|..-|..+.+.+.-.|-.|. ....+.|+...|...|.+.-.....|-.. -...+ .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 445566666666666554444443332 23455666777777777665543333222 11111 11233445554
Q ss_pred hHHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC
Q 048179 296 LGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS 340 (589)
Q Consensus 296 ~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 340 (589)
....-.+.+. .+.+.....-.+|.-+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444433 34444444445555555666666666666666554
No 296
>PRK09687 putative lyase; Provisional
Probab=91.83 E-value=11 Score=35.29 Aligned_cols=233 Identities=12% Similarity=0.034 Sum_probs=96.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCCh----hHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048179 210 LDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLA----GSTLELLMEMQSCGFEPDSVSLVSAL 285 (589)
Q Consensus 210 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll 285 (589)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. ++++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444445555555555433323333322334554445555566666653 3566666665333 45555555555
Q ss_pred HHHhccCchhh--HHHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-CHHH
Q 048179 286 LACAQIGFLKL--GKSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHG-HGEE 361 (589)
Q Consensus 286 ~~~~~~~~~~~--a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 361 (589)
.+++..+.... ......... ....++..+-...+.++.+.++.+....+..-+.++|...-...+.++...+ ....
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 55544432111 011111121 2222344444455555555554333222333333343333333333333332 1233
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 362 ALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 362 A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
+...+..+.. .+|...-...+.++.+.|+. .+...+-...+. ++ .....+.+++..|.. +|+..+..+.
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 4444444442 23444444445555555542 333333333321 11 122344555555553 3444444443
Q ss_pred C-CCChhHHHHHHHH
Q 048179 442 T-EPGLAVWVALLSG 455 (589)
Q Consensus 442 ~-~p~~~~~~~l~~~ 455 (589)
. .||..+-...+.+
T Consensus 262 ~~~~d~~v~~~a~~a 276 (280)
T PRK09687 262 YKFDDNEIITKAIDK 276 (280)
T ss_pred hhCCChhHHHHHHHH
Confidence 2 3444444333333
No 297
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.64 E-value=0.13 Score=47.72 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHH
Q 048179 426 RAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVR 503 (589)
Q Consensus 426 ~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 503 (589)
..|.+++|++.|.... .. |....+.--.+++.+.++...|++-+..+++++|+...-|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3456777777776653 22 344455555566778888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCccCCceeEEEECCEEE
Q 048179 504 KTMRKSGMKKVPGYSVVEVNGELH 527 (589)
Q Consensus 504 ~~m~~~g~~~~~~~s~~~~~~~~~ 527 (589)
...-+.+.....+...-+|....|
T Consensus 206 ~~a~kld~dE~~~a~lKeV~p~a~ 229 (377)
T KOG1308|consen 206 ALACKLDYDEANSATLKEVFPNAG 229 (377)
T ss_pred HHHHhccccHHHHHHHHHhccchh
Confidence 888877776655543334433333
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.56 E-value=0.44 Score=25.82 Aligned_cols=24 Identities=4% Similarity=0.021 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHH
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~ 504 (589)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888999999999888775
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.54 E-value=1.5 Score=37.90 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=55.0
Q ss_pred HHcCCHHHHHHHHHhcCCCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC----CCchhHHHHHHHHHhCCChHH
Q 048179 425 ARAGEVEEALKIVDSMSTEP--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP----DDLGIHALVSNFFAMEQKWEE 498 (589)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~ 498 (589)
.+.|+ ++|.+.|-.+...| +....-..+..|....|.+++++++-+++++.+ -|+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 66777777775543 344455555666668899999999999998753 268899999999999999988
Q ss_pred HH
Q 048179 499 VA 500 (589)
Q Consensus 499 a~ 500 (589)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.51 E-value=2 Score=36.39 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=22.5
Q ss_pred chHHHHHHHHHhccCCCCchhHHHHHHHHHhCC
Q 048179 462 FSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ 494 (589)
Q Consensus 462 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 494 (589)
+++|+.-|++++.++|+...++..++++|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 345666677777788888888888888877655
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.50 E-value=12 Score=32.98 Aligned_cols=178 Identities=10% Similarity=-0.006 Sum_probs=101.8
Q ss_pred cCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChh-HHHHHHH--HHHhcCCHHHHHHHHH
Q 048179 291 IGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLI-SWNVIIA--SYGIHGHGEEALSLFL 367 (589)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~ 367 (589)
.|-...|+--|.....-.|.-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-|.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 344455555555555555666778888888888999999999999998875442 2222222 2334688998988777
Q ss_pred HHHHcCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH-HHHHcCCHHHHHHHHHhcCCC-
Q 048179 368 QMIETMVKPDHS--TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD-LLARAGEVEEALKIVDSMSTE- 443 (589)
Q Consensus 368 ~m~~~~~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~- 443 (589)
+.-+.. +.|+. .|..+. ...-++.+|..-+.+--+ + .|.+-|...+- .|.-.=..+.+.+-...-..+
T Consensus 158 ~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 158 AFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 776654 22332 222222 233456666554433222 2 24444443332 222222222222222222211
Q ss_pred -----CChhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 444 -----PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 444 -----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
.-..+|--|..-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 113466777788889999999999999887654
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.43 E-value=8.9 Score=36.22 Aligned_cols=137 Identities=11% Similarity=0.186 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc--cCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHh
Q 048179 260 GSTLELLMEMQSCGFEPDSVSLVSALLACAQ--IGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQ 337 (589)
Q Consensus 260 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 337 (589)
++.+.+++.|.+.|+.-+..+|.+....... ..+.+ .....|..+|+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~------------------------------~~~~ra~~iy~~ 128 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD------------------------------EIIQRAKEIYKE 128 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH------------------------------HHHHHHHHHHHH
Confidence 4456788888999888887777554333222 11110 123456677777
Q ss_pred cCC-------CChhHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCc--HHHHHHHHH
Q 048179 338 MQS-------RDLISWNVIIASYGIHGH----GEEALSLFLQMIETMVKPDHS--TFASLLSALSHSGL--VEEGRYWFD 402 (589)
Q Consensus 338 ~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~ 402 (589)
|.+ ++-.++..++.. ..++ .+.+..+|+.+.+.|+..... ....++..+..... ...+.++++
T Consensus 129 mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 129 MKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred HHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 764 233344444433 2222 355677888888878765533 34444443333222 447788888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 403 LMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 403 ~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
.+.+. ++++...+|..++-+-.-.+.
T Consensus 207 ~l~~~-~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHc-CCccccccccHHHHHHhcCCc
Confidence 88887 888888888766544433333
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.32 E-value=0.72 Score=26.73 Aligned_cols=28 Identities=7% Similarity=0.008 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998875
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.26 E-value=0.57 Score=28.71 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998865
No 305
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.06 E-value=3.7 Score=32.86 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=27.9
Q ss_pred CchHHHHHHHHHhc-cCCC-CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 461 KFSIGEKVAKKVLK-LNPD-DLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 461 ~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
|..+++.+++.+.+ -.|. ......-|+-.+.+.|+++.++++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 45566666666665 3332 223444455566677777777777666654
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.04 E-value=5.3 Score=34.44 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChh------h
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHS--TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEK------H 416 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~------~ 416 (589)
.+..+...|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++........|.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45555666666666666666666666654444432 344555566666666666666665544311111111 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 417 YACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
|..+ .+...+++.+|-+.|-..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2111 223456777777766655
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.98 E-value=29 Score=36.75 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=68.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCcc
Q 048179 83 LKACVSLMDLKMGEEIWRKAVELGYGN---DVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPR 159 (589)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (589)
++.+.+.+.+++|..+.+... |..+ -..++...|..+...|++++|-...-.|...+..-|.-.+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 344455566666665554432 2233 34567788888889999999999999999999999998888888888776
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048179 160 EAVDAYKRMKKEGIDADEVVMMGLIQACAD 189 (589)
Q Consensus 160 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 189 (589)
....+ +.....+.+...|-.++..+..
T Consensus 441 ~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 54433 2222222345566666666655
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.92 E-value=1.8 Score=40.04 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhcCCC---CcchHHHHHHHHHhCCCccHHHHHHHHHHH-----CCCCCChhhHHHHH
Q 048179 113 VGSSMLNLYVKCGKMNEAMVAFEKMQRK---DLVCWSSMINGLVFNGQPREAVDAYKRMKK-----EGIDADEVVMMGLI 184 (589)
Q Consensus 113 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll 184 (589)
++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4556777788888888888888887753 566788888888888888888888888765 46666665554444
Q ss_pred HH
Q 048179 185 QA 186 (589)
Q Consensus 185 ~~ 186 (589)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.81 E-value=5.9 Score=38.95 Aligned_cols=88 Identities=23% Similarity=0.230 Sum_probs=39.4
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHH
Q 048179 389 SHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTE--PGLAVWVALLSGCHNHKKFSIGE 466 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~ 466 (589)
.+.|+++.+.+.+..... -+.....+..++++...+.|++++|...-+.|... .+..+...........|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 444555555555544443 22233444455555555555555555555444211 12222222222233444455555
Q ss_pred HHHHHHhccCCC
Q 048179 467 KVAKKVLKLNPD 478 (589)
Q Consensus 467 ~~~~~~~~~~p~ 478 (589)
..+++++.++|.
T Consensus 412 ~~wk~~~~~~~~ 423 (831)
T PRK15180 412 HYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccCCh
Confidence 555555555443
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.67 E-value=7.9 Score=31.78 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=43.7
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc
Q 048179 389 SHSGLVEEGRYWFDLMVSKYKIQPTE-KHYACMVDLLARAGEVEEALKIVDSMSTEP-GLAVWVALLSGCHNH 459 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 459 (589)
...++.+++..+++.+. -+.|+. ..-..-+..+.+.|+|++|..+|++....+ ....-..|+..|...
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34788888888888887 344552 222233456778899999999999886653 444444555555443
No 311
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.32 E-value=9.8 Score=30.45 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048179 325 CGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLM 404 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 404 (589)
||++......+-.+- .+.......+..+...|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++.++
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444443332 22334455567777888888888888887653 3677777888888888888888888888888
Q ss_pred HHhcCC
Q 048179 405 VSKYKI 410 (589)
Q Consensus 405 ~~~~~~ 410 (589)
.+. |+
T Consensus 147 Cek-G~ 151 (161)
T PF09205_consen 147 CEK-GL 151 (161)
T ss_dssp HHT-T-
T ss_pred HHh-ch
Confidence 775 54
No 312
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.31 E-value=1.3 Score=29.16 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 450 VALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 450 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
-.+.-++.+.|+++.|.+..+.+++++|+|..+...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 345667899999999999999999999998755443
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=14 Score=31.96 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH-----HHHHHHHHcCCHHHH
Q 048179 361 EALSLFLQMIETMVKPDHSTFA--SLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYA-----CMVDLLARAGEVEEA 433 (589)
Q Consensus 361 ~A~~~~~~m~~~~~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 433 (589)
+......++.........-++. .+...+...+++++|...++..... |.-+.+. .|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444555555543121111222 2344567788888888888876632 2222333 345667788888888
Q ss_pred HHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 434 LKIVDSMSTE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 434 ~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
+..++....+ -.......-...+...|+-++|+..|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8888776422 11222233345678888888888888888877643
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.06 E-value=0.54 Score=26.98 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=10.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 048179 485 LVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 485 ~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.++.+|.+.|++++|.+.++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 315
>PRK09687 putative lyase; Provisional
Probab=88.89 E-value=21 Score=33.58 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALS 389 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~ 389 (589)
+..+-...+.++.+.|+......+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 33344444555555555332223333333333 223455666666664 566666666653 345555555555543
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.85 E-value=4.6 Score=34.81 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=66.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHH
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQSRD------LISWNVIIASYGIHGHGEEALSLFLQMIETMVK---PDHSTFAS 383 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~t~~~ 383 (589)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+....--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345788899999999999999999988632 245677888888999999998888776653222 22221111
Q ss_pred HH--HHHhcCCcHHHHHHHHHHHHHh
Q 048179 384 LL--SALSHSGLVEEGRYWFDLMVSK 407 (589)
Q Consensus 384 ll--~a~~~~g~~~~a~~~~~~~~~~ 407 (589)
.. -++...+++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 11 1244568899988888776543
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.64 E-value=5.7 Score=34.30 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=63.5
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCC-hhHHHHHHHHHHhcCCc
Q 048179 388 LSHSGLVEEGRYWFDLMVSKYKIQPT---EKHYACMVDLLARAGEVEEALKIVDSM-STEPG-LAVWVALLSGCHNHKKF 462 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 462 (589)
+...|++++|..-|..+...+.-.+. ...|..-..++.+.+.++.|++-..+. ...|. ...+..-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45667777777777777653211111 223444455677778888887776664 22332 22222334467788899
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 463 SIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
+.|++-|+++++.+|....+-...+.+
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999766554444443
No 318
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.62 E-value=1.2 Score=43.74 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=70.8
Q ss_pred HHHHHHcCCHHHHHHHHHhc-CCCCChhHHHH-HHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHH
Q 048179 421 VDLLARAGEVEEALKIVDSM-STEPGLAVWVA-LLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEE 498 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 498 (589)
.+.+...+.++.|..++.++ ..+||-..|.+ -..++.+.+++..|..-+.++++++|.....|..-+.++.+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34455677888888888776 44675544433 33678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 048179 499 VAGVRKTMRK 508 (589)
Q Consensus 499 a~~~~~~m~~ 508 (589)
|...++....
T Consensus 91 A~~~l~~~~~ 100 (476)
T KOG0376|consen 91 ALLDLEKVKK 100 (476)
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.37 E-value=0.63 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
+-.+..++...|++++|.+.++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445677788999999999999999998884
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.36 E-value=0.82 Score=25.48 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
|..+...+...|+++.|...+++++++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33344444444555555555555444444
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.35 E-value=16 Score=31.62 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=66.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHH-----HHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC
Q 048179 420 MVDLLARAGEVEEALKIVDSMSTEPGLAVWVAL-----LSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ 494 (589)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 494 (589)
+...+..+|++++|...++.....|....+.++ .......|.++.|...+....+-.= .+..-..-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 345678999999999999987655555555444 3456788899998888766543211 2233556799999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 048179 495 KWEEVAGVRKTMRKSG 510 (589)
Q Consensus 495 ~~~~a~~~~~~m~~~g 510 (589)
+-++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998755
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.15 E-value=0.71 Score=38.28 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=20.5
Q ss_pred HHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHH
Q 048179 48 IIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEE 97 (589)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 97 (589)
|..+.+.+.+......++.+...+...+....+.++..|++.++.+....
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~ 63 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE 63 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 33344444444444444444443333333444444444444443333333
No 323
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.81 E-value=19 Score=37.72 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=58.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPDHST---FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
|...+..+.|.+.|++.-+ +.|+... +..|+.+-.+ .++...+ +.. .--.|-..++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~E----lq~---------IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLE----LQQ---------IGMKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHH----HHH---------HHHHHHHHhhccch
Confidence 4445556778888887665 4666542 3334333221 1111111 111 11124456778888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 430 VEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 430 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
++.-.++++-. ..+.+-.-.+|+.+|.++.+.++++.|..-
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 88877777542 234455566888899999999999887654
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=20 Score=32.17 Aligned_cols=24 Identities=0% Similarity=-0.085 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHH
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLM 404 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~ 404 (589)
|...+-.+....++..|...++..
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcch
Confidence 333334444444555555555543
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.43 E-value=43 Score=35.62 Aligned_cols=86 Identities=14% Similarity=0.027 Sum_probs=41.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHh--hcCCCChhHHHHHHHHhHh---
Q 048179 250 ISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTV--RRFDFNLVLGTSVIDMYSK--- 324 (589)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~--- 324 (589)
...+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+. ....+.+.-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4456778999999999877 2234666777666665544333222211 2222 1111122445677777776
Q ss_pred cCCHHHHHHHHHhcCC
Q 048179 325 CGVPSCARALFDQMQS 340 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~ 340 (589)
..++..|.+.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4677888888766653
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.12 E-value=1.6 Score=38.58 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 455 GCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 455 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
.+.+..+++.+.+--++++++.|+....+..++........+++|+..+.+.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344444444444444444445544444444444444444444444444444
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=45 Score=35.40 Aligned_cols=128 Identities=17% Similarity=0.135 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc-
Q 048179 213 KVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQI- 291 (589)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~- 291 (589)
.++..+++.+...|++++|-...-.|...+..-|.--+..+...++......++ .....+.+...|..++..+...
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~~~ 469 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLASD 469 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHHHH
Confidence 455566666666677777766666666655555555555555555433322211 0000011222333333333220
Q ss_pred ------------CchhhHHHHHHHHh---hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCh
Q 048179 292 ------------GFLKLGKSIHGYTV---RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDL 343 (589)
Q Consensus 292 ------------~~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 343 (589)
+++-.+..+.+... +...-+..+...|+..|...+++..|..++-...++++
T Consensus 470 ~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 470 VKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 00000111111111 11112233445588888999999999998888876554
No 328
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.90 E-value=10 Score=28.54 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=49.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 048179 218 LVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVS 283 (589)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 283 (589)
-+..+...|++++|..+.+.+..||...|-+|.. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3445677899999999999999999999988765 57788888888888888877 666555543
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.90 E-value=8.1 Score=35.89 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC-C------CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh
Q 048179 106 GYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR-K------DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEV 178 (589)
Q Consensus 106 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 178 (589)
|.+....+-..++..-....+.+++...+-.+.. + +.. -.++++.+ -.-++++++-++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4455555666667666667788888887776664 2 211 12223322 2336778888888888899999999
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhc
Q 048179 179 VMMGLIQACADLGDSRFGLSVHGYSIRRH 207 (589)
Q Consensus 179 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 207 (589)
++..++..+.+.+++..|.++.-.++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999998888887777654
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.85 E-value=4.8 Score=30.07 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 359 GEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 359 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
.-++.+-++.+....+.|++....+.+.||-+.+++..|.++|+..+.+.+ .+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 345566666777777889999999999999999999999999998876433 24446665553
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.63 E-value=4.2 Score=30.36 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHH-HhCCCCChhhHHHHHH
Q 048179 57 PFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAV-ELGYGNDVFVGSSMLN 119 (589)
Q Consensus 57 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 119 (589)
.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-+. +.|. +...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 33566667777777889999999999999999999999999999776 3332 3345554443
No 332
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.56 E-value=13 Score=35.08 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHHhc--cC----CHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHHhCCCh-
Q 048179 58 FEVLGLYNQMIKEDVRPDSSTFTVALKACVS--LM----DLKMGEEIWRKAVELGY---GNDVFVGSSMLNLYVKCGKM- 127 (589)
Q Consensus 58 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~- 127 (589)
.+.+.+++.|.+.|++-+..+|.+..-.... .. ....+..+|+.|.+..+ .++-.++..|+.. ...+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566688889999999888887765444433 22 35578889999988753 3444555555543 33333
Q ss_pred ---HHHHHHHHhcCC-----CCcchHHHHHHHHHhC-CC--ccHHHHHHHHHHHCCCCCChhhHHHHH
Q 048179 128 ---NEAMVAFEKMQR-----KDLVCWSSMINGLVFN-GQ--PREAVDAYKRMKKEGIDADEVVMMGLI 184 (589)
Q Consensus 128 ---~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~~~~p~~~t~~~ll 184 (589)
+.++..|+.+.+ .|..-+-+-+-++... .. ...+.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 334444444433 1222222222222211 11 335666777777777766665554443
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.18 E-value=13 Score=37.96 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHH
Q 048179 225 TGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYT 304 (589)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 304 (589)
.|+++.|..++..++++ ..+.++.-+-+.|-.++|+++ .+|+..- .....+.|+++.|.++....
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 46677776666666532 233445555566666666553 2222111 11123345555554443332
Q ss_pred hhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048179 305 VRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETM 373 (589)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 373 (589)
. +..-|..|.++..+.+++..|.++|.+..+ |..|+-.+...|+.+....+-....+.|
T Consensus 664 ~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 664 N-----SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred c-----chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 2 333445555555555555555555554442 4444444444555443333333333333
No 334
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.05 E-value=2.7 Score=31.36 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 466 EKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
...+++.++.+|+|......++..+...|++++|++.+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44566667777877777777888888888888887777766653
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.01 E-value=4.8 Score=30.43 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 361 EALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 361 ~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
+..+-+..+....+.|++....+.+.||.+.+++..|.++|+.++.+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555566666677889999999999999999999999999999987644 33447776654
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.12 E-value=20 Score=36.72 Aligned_cols=149 Identities=15% Similarity=0.053 Sum_probs=90.3
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048179 324 KCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDL 403 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 403 (589)
-.|+++.|..++..++++ ..+.++.-+..+|-.++|+++- ..||.. | ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-F----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQR-F----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhhh-h----hhhhhcCcHHHHHHHHHh
Confidence 356677777666666532 2334445555666666665432 222222 2 123456778877776555
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhH
Q 048179 404 MVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 404 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
.. +..-|..|.++....|++..|.+-|.+.. -|..|+-.+...|+-+.-..+.....+....|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 43 44567888888888888888888887754 356666667777776655555555544444332
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 048179 484 ALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 484 ~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
--.+|...|++++..+++.+
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHh
Confidence 23456778888888887764
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.02 E-value=1.5 Score=26.73 Aligned_cols=29 Identities=7% Similarity=0.202 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKL 475 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 475 (589)
.+++.|...|...|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888888753
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.75 E-value=5.6 Score=39.07 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=83.9
Q ss_pred HhcCCHHHHH-HHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 048179 323 SKCGVPSCAR-ALFDQMQS--RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRY 399 (589)
Q Consensus 323 ~~~g~~~~A~-~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~ 399 (589)
...|++-.|- ++|+-+.. .++.........+...|.++.+...+...... +.....+...+++.....|.+++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3456665554 44444432 22222222333456789999998888765543 34456778888889999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC--CCCChhHHHHHHHH--HHhcCC
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS--TEPGLAVWVALLSG--CHNHKK 461 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~--~~~~~~ 461 (589)
.-.-|... .+ .+.+......-..-..|-++++.-.+++.- ..|...-|...+.. |...|+
T Consensus 379 ~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 88888764 33 233333333334445678888888888863 24556667666665 444443
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.28 E-value=1.5 Score=36.34 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHH
Q 048179 149 INGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSV 199 (589)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 199 (589)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 344444445555555555554443333344444455555554444443333
No 340
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.66 E-value=1.8 Score=25.28 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=15.9
Q ss_pred hcCCCChhHHHHHHHHhHhcCCHHHHH
Q 048179 306 RRFDFNLVLGTSVIDMYSKCGVPSCAR 332 (589)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~g~~~~A~ 332 (589)
...|.+...++.+...|...|++++|+
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555666666666666666666654
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.48 E-value=67 Score=34.28 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=97.7
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHHHH-CCCCCCc--ccHHHHHHHHh-ccCCHHHHHHHHHHHHHhCCCCChh---
Q 048179 40 GVDTYNSIIIAYSRKESPFEVLGLYNQMIK-EDVRPDS--STFTVALKACV-SLMDLKMGEEIWRKAVELGYGNDVF--- 112 (589)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~--- 112 (589)
++..|..||. .|++.++...+ ..++|.. .++.-+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4556666665 45566666663 2233322 23344444443 5677888888888765543232222
Q ss_pred --hHHHHHHHHHhCCChHHHHHHHHhcCCC----CcchHHHHH-----HHHHhCCCccHHHHHHHHHHHCC---CCCChh
Q 048179 113 --VGSSMLNLYVKCGKMNEAMVAFEKMQRK----DLVCWSSMI-----NGLVFNGQPREAVDAYKRMKKEG---IDADEV 178 (589)
Q Consensus 113 --~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~ 178 (589)
....++..+.+.+... |....++..+. ....|.... ..+...+++..|++.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234566666666555 77666665431 122232222 22223367888888888775532 233344
Q ss_pred hHHHHHHHHH--ccCCcHHHHHHHHHHHHhcC---------CCchHHHHHHHHHH--HhcCCHHHHHHHHhhc
Q 048179 179 VMMGLIQACA--DLGDSRFGLSVHGYSIRRHL---------NLDVKVQTSLVDMY--AKTGHLDLASHVFKNM 238 (589)
Q Consensus 179 t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 238 (589)
.+..++.+.. ..+..+.+.+....+..... .|...++..+++.+ ...|+++.+...++++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555544 33445566666655533221 23445566665544 3456666665554443
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.35 E-value=27 Score=29.61 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=75.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH-----HHHHHH
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPDHS-TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACM-----VDLLAR 426 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 426 (589)
+++.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-... |.+....-+ .-++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHHhc
Confidence 355677788888888888776442221 22223334567788888888888887542 222222111 234567
Q ss_pred cCCHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 427 AGEVEEALKIVDSMSTEPG---LAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 427 ~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
.|.+++.....+-+..+.+ ...-..|.-+-.+.|++..|...|.++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7888888777777644322 33445666677788888888888888775
No 343
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.12 E-value=35 Score=30.75 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
....++...|++-++++....++...|.|..+|..-+.+.+..=+.++|..-+....+
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3344556778888899999999999999999999999888888888888888887775
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.12 E-value=65 Score=33.85 Aligned_cols=151 Identities=9% Similarity=0.043 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048179 354 GIHGHGEEALSLFLQMIE-------TMVKPDHSTFASLLSALSHSG-----LVEEGRYWFDLMVSKYKIQPTEKHYACMV 421 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 421 (589)
....+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++...... + .|+....-...
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHH
Confidence 344566677776666655 33 2223445555555532 456677777776653 2 23333332222
Q ss_pred HHHHH-cCCHHHHHHHHHhcCCCCChhHHHHHHHHHH----hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC-CC
Q 048179 422 DLLAR-AGEVEEALKIVDSMSTEPGLAVWVALLSGCH----NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME-QK 495 (589)
Q Consensus 422 ~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~ 495 (589)
..... ..+...|.++|......-.....-.+...+. ...+.+.|...++++-+.+ ++.+...++..+.-. ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc
Confidence 22222 2356677777777654333333222222221 2346777777777777766 333334444333322 67
Q ss_pred hHHHHHHHHHHHhCCC
Q 048179 496 WEEVAGVRKTMRKSGM 511 (589)
Q Consensus 496 ~~~a~~~~~~m~~~g~ 511 (589)
++.+.-.+..+.+.|.
T Consensus 413 ~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 413 YDTALALYLYLAELGY 428 (552)
T ss_pred ccHHHHHHHHHHHhhh
Confidence 7776666666655544
No 345
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.85 E-value=35 Score=30.55 Aligned_cols=88 Identities=16% Similarity=0.270 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHHHhcCCC-CChhhHHHHH---HHHHHcCCHHHHHHHHHhcCC---CCChhHHH---HHHHH--HHhc
Q 048179 392 GLVEEGRYWFDLMVSKYKIQ-PTEKHYACMV---DLLARAGEVEEALKIVDSMST---EPGLAVWV---ALLSG--CHNH 459 (589)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~---~l~~~--~~~~ 459 (589)
.+++.|+..|+..-+-|... .+...-.|++ ..-+..+++.+|+++|++... ..+..-|. -++.+ |.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45666666666655433221 1122222333 334567899999999988632 22222222 22222 4333
Q ss_pred -CCchHHHHHHHHHhccCCCC
Q 048179 460 -KKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 460 -~~~~~a~~~~~~~~~~~p~~ 479 (589)
.|.--+...+++-.+++|.-
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcc
Confidence 67777888899999999963
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.01 E-value=7.4 Score=36.13 Aligned_cols=97 Identities=10% Similarity=0.068 Sum_probs=50.2
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHHHHCC---CCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHH
Q 048179 40 GVDTYNSIIIAYSRKESPFEVLGLYNQMIKED---VRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSS 116 (589)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 116 (589)
.+.+-..++..-....++++++..+-+++..- ..|+. +-...++.|.+ -+++.+..++..-+..|+-||.+++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 34444455555555556666666555554321 11111 12222333322 234556666655566666666666666
Q ss_pred HHHHHHhCCChHHHHHHHHhcC
Q 048179 117 MLNLYVKCGKMNEAMVAFEKMQ 138 (589)
Q Consensus 117 li~~~~~~g~~~~A~~~~~~~~ 138 (589)
+|+.+.+.+++.+|.++.-.|.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHH
Confidence 6666666666666665555544
No 347
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.98 E-value=16 Score=31.24 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=27.8
Q ss_pred chHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048179 462 FSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKK 513 (589)
Q Consensus 462 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 513 (589)
+++|...|+++...+|+|..+...|-.. ++|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhhh
Confidence 5678888999999999877555555322 35667777776665543
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.93 E-value=61 Score=32.71 Aligned_cols=184 Identities=10% Similarity=0.163 Sum_probs=115.7
Q ss_pred HHHHHHHh-hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048179 298 KSIHGYTV-RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--RDLISWNVIIASYGIHGHGEEALSLFLQMIETMV 374 (589)
Q Consensus 298 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 374 (589)
.-+-..+. +..+.|....-++++.+.......-.+.+..+|.. .+-..+..++.+|..+ ..+.-..+|+++.+..+
T Consensus 51 lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df 129 (711)
T COG1747 51 LYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF 129 (711)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc
Confidence 33333343 44455555566777888877777777778777764 5667788888888888 45778888888888643
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHhcCCC----C
Q 048179 375 KPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT------EKHYACMVDLLARAGEVEEALKIVDSMSTE----P 444 (589)
Q Consensus 375 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p 444 (589)
|...+..-+..+...++...+..+|..+... +-|. .+.|..++... ..+.+....+..++..+ .
T Consensus 130 --nDvv~~ReLa~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~ 203 (711)
T COG1747 130 --NDVVIGRELADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR 203 (711)
T ss_pred --hhHHHHHHHHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch
Confidence 3333433344444448888888888888763 3332 23454444322 34555555555555322 2
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
-...+.-+-.-|....|+.+|++++...++.+..+..+--.+..
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 23344444456778889999999999888887766554444443
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.72 E-value=39 Score=30.28 Aligned_cols=90 Identities=9% Similarity=0.024 Sum_probs=47.9
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhcC-----CCCChhHHHHHHHH---HHhcCCchHHHHHHHHHhccCCCCch------hH
Q 048179 419 CMVDLLARA-GEVEEALKIVDSMS-----TEPGLAVWVALLSG---CHNHKKFSIGEKVAKKVLKLNPDDLG------IH 483 (589)
Q Consensus 419 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~p~~~~------~~ 483 (589)
.+.+.|... .++++|+..|+... .+.+...-..++.+ -...+++.+|+.+|+++..-.-+|+. -|
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 445555444 56666666666542 12223333334433 35678999999999999865544432 12
Q ss_pred H-HHHHHHHhCCChHHHHHHHHHHHh
Q 048179 484 A-LVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 484 ~-~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
. .-+..+.-.++.-.+...+++-.+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2 222333333555555555555444
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.50 E-value=3.3 Score=25.90 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 484 ALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 484 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 458899999999999999999888644
No 351
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.98 E-value=11 Score=28.65 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHH
Q 048179 261 STLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVI 319 (589)
Q Consensus 261 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 319 (589)
+..+-++.+....+.|++......+.+|.+.+++..|..+++.+.....+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45555666666677888888888888888888888888888877733333333555444
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.98 E-value=3.2 Score=22.77 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..+..++.+|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999988765
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.97 E-value=22 Score=26.92 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFA 382 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 382 (589)
+..+...|++++|..+.+....||...|-++.. .+.|-.+++..-+.+|...| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345567788888888888888888888877654 35677677777777777776 55555554
No 354
>PRK12798 chemotaxis protein; Reviewed
Probab=80.87 E-value=60 Score=31.95 Aligned_cols=179 Identities=15% Similarity=0.172 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHhcCC----CChhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCcHH
Q 048179 325 CGVPSCARALFDQMQS----RDLISWNVIIAS-YGIHGHGEEALSLFLQMIETMVKPDH----STFASLLSALSHSGLVE 395 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~a~~~~g~~~ 395 (589)
.|+..+|.+.+..+.. +....+-.|+.+ .....++.+|+++|+...-. .|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888887764 344566666655 44567889999999987653 3332 23344445567889999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHH-HHHHHHHHcC---CHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHH
Q 048179 396 EGRYWFDLMVSKYKIQPTEKHYA-CMVDLLARAG---EVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKK 471 (589)
Q Consensus 396 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 471 (589)
++..+-......|...|-...|. .+...+.+.+ ..+.-..++..|...-....|..+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777666666544333 2333333333 3444555566665333456788888888999999999999999
Q ss_pred HhccCCCCchhHHHHHHHHHh-----CCChHHHHHHHHHH
Q 048179 472 VLKLNPDDLGIHALVSNFFAM-----EQKWEEVAGVRKTM 506 (589)
Q Consensus 472 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 506 (589)
+..+.+. ...-...+.+|.. ..+.++|.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9987632 2222233333332 34566666655544
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.68 E-value=6.5 Score=36.11 Aligned_cols=59 Identities=8% Similarity=-0.087 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
++-....|...|.+.+|.++.++++.++|-+...+-.|..+|+..|+--+|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445678999999999999999999999999999999999999999888888877774
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.67 E-value=47 Score=30.63 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=58.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC--------CChhHHHHH-HHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQS--------RDLISWNVI-IASYGIHGHGEEALSLFLQMIE----TMVKPDHSTFA 382 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~~ 382 (589)
.-++..+.+.|.+.+|..+...+.. ++.++...+ -.+|-...+..++..-+...+. .-.+|....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4566777778888887776654431 222221111 1233333444444333333221 12345444444
Q ss_pred HHHHHH--hcCCcHHHHHHHHHHHHHhcC-CCCChhhHHHHHHHH---HHcCCHHHHHHHHH
Q 048179 383 SLLSAL--SHSGLVEEGRYWFDLMVSKYK-IQPTEKHYACMVDLL---ARAGEVEEALKIVD 438 (589)
Q Consensus 383 ~ll~a~--~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~ 438 (589)
-|+++. +...++..|..+|-+..+.|. ...+.....+|--++ .-..+.++...+++
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~ 270 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLR 270 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 555553 334567788888877776432 223333333332222 23344555544443
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.72 E-value=3.7 Score=22.10 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 048179 419 CMVDLLARAGEVEEALKIVD 438 (589)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~ 438 (589)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 45555666666666665554
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.44 E-value=1e+02 Score=33.62 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=109.7
Q ss_pred HHhHhcCCHHHHHHHHHhcCC----CCh-------hHHHHHHH-HHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQS----RDL-------ISWNVIIA-SYGIHGHGEEALSLFLQMIETM----VKPDHSTFAS 383 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~----~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~ 383 (589)
-......++++|..++.+... ++. ..|+++-. .....|++++|.++.+.....= ..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 334556788888888776542 221 25666543 3345788999999888776541 2233445566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH-----HHHHHcCCHHHHH--HHHHhc-----CCCCC----hh
Q 048179 384 LLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMV-----DLLARAGEVEEAL--KIVDSM-----STEPG----LA 447 (589)
Q Consensus 384 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~A~--~~~~~~-----~~~p~----~~ 447 (589)
+..+..-.|++++|..+.....+. .-.-+..++.... ..+..+|+...|. ..+... ..+|- ..
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 666777789999999888776553 2223443333222 3455677433332 233322 11222 22
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccC----CCC---chhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLN----PDD---LGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
+...++.++.+ ++.+..-....+++. |.. ...+..|+.++...|+.++|...+.++.....
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 33344444333 666666666655543 322 12334789999999999999999998876443
No 359
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.22 E-value=26 Score=26.86 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=55.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 048179 191 GDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQ 270 (589)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 270 (589)
...++|..+.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+|.. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345667777766666553 233444445566778899999955555556688888877755 58888888888888887
Q ss_pred hcCCCCCHHHH
Q 048179 271 SCGFEPDSVSL 281 (589)
Q Consensus 271 ~~g~~p~~~~~ 281 (589)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 776 5555544
No 360
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.82 E-value=75 Score=31.86 Aligned_cols=115 Identities=13% Similarity=-0.022 Sum_probs=55.6
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChh---hHH----HHHHHH-HHcCCHHHHHHHHHhcCCC---CChhHH--HHHHHHH
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPTEK---HYA----CMVDLL-ARAGEVEEALKIVDSMSTE---PGLAVW--VALLSGC 456 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~----~l~~~~-~~~g~~~~A~~~~~~~~~~---p~~~~~--~~l~~~~ 456 (589)
-.|++.+|++-...|..-+.-.|... ... .++..| ...+.++.|..-|...... -|...+ ..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 35777777777766665544444411 112 222222 2456677777666554221 222222 2233345
Q ss_pred HhcCCchHHHHHHHHHhccCCCCc----------hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDDL----------GIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~~----------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.+.|+.+ ..++-+-.+.|.|. ..+...|-....++++.||.....+-.
T Consensus 415 L~~~~~e---d~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 415 LRIGDAE---DLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HHhccHH---HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5655533 33333333444432 234444445556777777776665543
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.33 E-value=3.9 Score=23.03 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 460 KKFSIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 460 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999998888888888776653
No 362
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.25 E-value=1e+02 Score=33.06 Aligned_cols=370 Identities=10% Similarity=-0.032 Sum_probs=160.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 048179 114 GSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDS 193 (589)
Q Consensus 114 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 193 (589)
-..-+..+.+.+++......+..- ..+...-.....+....|+.++|......+-..|- ........++..+.+.|.+
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 344455566777888777733222 23444455566777778887777766666644432 2344566666666554443
Q ss_pred HHHHH--HHHHHHHhc-----------CCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHH--HhCC
Q 048179 194 RFGLS--VHGYSIRRH-----------LNLD-VKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGF--AQNG 257 (589)
Q Consensus 194 ~~a~~--~~~~~~~~~-----------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g 257 (589)
..... =+..+...| +.++ ......++..+ .+...+...+.... ++...-..++.++ ....
T Consensus 180 t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 180 DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHh
Confidence 32211 011111111 0011 01111111111 12222222222211 1111111111111 1233
Q ss_pred ChhHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHH
Q 048179 258 LAGSTLELLMEMQSCG-FEPDSV--SLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARAL 334 (589)
Q Consensus 258 ~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 334 (589)
+.+.|..++....... ..+... ....+....+..+....+...+....... .+..+...-+..-.+.++++.+...
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHH
Confidence 4566666666653332 222221 11122211222211333333333322111 1223333344444466667666666
Q ss_pred HHhcCC--CChhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHhcCC
Q 048179 335 FDQMQS--RDLISW-NVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEG-RYWFDLMVSKYKI 410 (589)
Q Consensus 335 ~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a-~~~~~~~~~~~~~ 410 (589)
|..|.. .+..-| -=+..++...|+.++|...|+++.. . .+|-.++.+- +.|..-.- ......-.. .+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~--~~ 405 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDS--AL 405 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCCCCCCCCCchhh--hh
Confidence 666653 111111 1234454556777777777766532 1 1233332211 11211000 000000000 00
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccC---CCCchhHHHHH
Q 048179 411 QPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN---PDDLGIHALVS 487 (589)
Q Consensus 411 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~ 487 (589)
+.. .-..-+..+...|+..+|...+..+....+......+.......|.++.++....+....+ -.-|..|....
T Consensus 406 -~~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~ 483 (644)
T PRK11619 406 -TQG-PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEF 483 (644)
T ss_pred -ccC-hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHH
Confidence 000 1112345677889999999888776555565666666666778888888888776543211 01233455555
Q ss_pred HHHHhCCChHHHHH
Q 048179 488 NFFAMEQKWEEVAG 501 (589)
Q Consensus 488 ~~~~~~g~~~~a~~ 501 (589)
..+.+.-..+.+.-
T Consensus 484 ~~~a~~~~v~~~lv 497 (644)
T PRK11619 484 RRYTSGKGIPQSYA 497 (644)
T ss_pred HHHHHHcCCCHHHH
Confidence 55555555555543
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.18 E-value=49 Score=29.34 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHH
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMV 421 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 421 (589)
.+..++.+.+.++..+++...++-++.. +.|..+-..++..++-.|++++|..-++-+.+ +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 4455677778888899998888877764 44555666777888889999999887776653 3333 44555555
Q ss_pred HHHHHcCCHHHHH-HHHHhcCCCC-----ChhHHHHHHHH---HHhcCCchHHHHHHHHHhccCCCCc
Q 048179 422 DLLARAGEVEEAL-KIVDSMSTEP-----GLAVWVALLSG---CHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 422 ~~~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
++ +.+. ++|..- ..| ....|...+.+ |...|.-+.+..+-+.+++..|..+
T Consensus 80 r~-------ea~R~evfag~-~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RC-------EAARNEVFAGG-AVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHHhccC-CCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 43 2222 233321 112 34456554443 3333445555666677777666544
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.92 E-value=8.3 Score=33.85 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 417 YACMVDLLARAGEVEEALKIVDS-MSTEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
.+.-+..+.+.+.+.+|+...+. .+.+| |...-..++..++..|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456678888999999987765 45566 455667788889999999999999999889988754
No 365
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.20 E-value=65 Score=30.25 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=12.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 048179 351 ASYGIHGHGEEALSLFLQ 368 (589)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~ 368 (589)
..+.+.+++++|.+.|+-
T Consensus 254 ~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHhhcCHHHHHHHHHH
Confidence 345567888888888764
No 366
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.12 E-value=6.9 Score=29.50 Aligned_cols=53 Identities=6% Similarity=0.001 Sum_probs=38.9
Q ss_pred HHhcCCchHHHHHHHHHhccCCC----C-----chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPD----D-----LGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+.+.||+..|.+.+.+.+..... . ..+...++.+....|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888888887777754321 1 23456678889999999999999988764
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.09 E-value=1.1e+02 Score=32.24 Aligned_cols=177 Identities=7% Similarity=0.009 Sum_probs=84.7
Q ss_pred CHHHHHHHHHhcCCC-ChhHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 048179 327 VPSCARALFDQMQSR-DLISWNVIIASYG----IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWF 401 (589)
Q Consensus 327 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 401 (589)
+...|.++|....+. .+.+.-.+...|. ...+...|..++++..+.| .|-..--...+..+.. +.++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 455666666555432 2222222222221 2235667777777777766 3332222233333333 5555554444
Q ss_pred HHHHHhcCCCCChhhHHHHHHHH---HH----cCCHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHH
Q 048179 402 DLMVSKYKIQPTEKHYACMVDLL---AR----AGEVEEALKIVDSMSTEPGLAVWVALLSGCHN----HKKFSIGEKVAK 470 (589)
Q Consensus 402 ~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 470 (589)
..+.+. +.+.....-..+.+.. .. ..+.+.+...+.+...+-+......|...|.. ..+++.|...+.
T Consensus 421 ~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 421 LYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred HHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 444332 2211111000111110 00 12445555556555444445555555544332 235777777777
Q ss_pred HHhccCCCCchhHHHHHHHHHhC---CChHHHHHHHHHHHhC
Q 048179 471 KVLKLNPDDLGIHALVSNFFAME---QKWEEVAGVRKTMRKS 509 (589)
Q Consensus 471 ~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 509 (589)
++-+.. +.....++.++..- .++..|.+++....+.
T Consensus 500 ~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 500 RASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 776655 56666777776541 1267888888777653
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.04 E-value=29 Score=30.36 Aligned_cols=72 Identities=15% Similarity=0.069 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhC---CCCChhhHHHHHHHHHhCCChHHH
Q 048179 58 FEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELG---YGNDVFVGSSMLNLYVKCGKMNEA 130 (589)
Q Consensus 58 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A 130 (589)
+.|.+.|-.+...+.--++.....+.. +-...+.+.+.+++-.+++.. -.+|+.++.+|++.|.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444455544444432222222222222 222344555555555444431 134455555555555555555544
No 369
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.90 E-value=1.4e+02 Score=33.60 Aligned_cols=159 Identities=9% Similarity=-0.010 Sum_probs=67.2
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHhcCCCCC
Q 048179 335 FDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEE-GRYWFDLMVSKYKIQPT 413 (589)
Q Consensus 335 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~~~~~~p~ 413 (589)
...+.++|...-...+.++...+..+. +.... -.++...-.....++...+..+. +...+..+.. .++
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d 788 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPD 788 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCC
Confidence 334444555444445555554443321 11111 13344444444444444443322 2233333332 244
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
...-...+.++.+.|..+.+...+..+...+|..+-...+.++...+. +.+...+..+++ +| +...-..-+.++.+.
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHhcc
Confidence 555555666666666554443334444334454444445555555543 234444444442 22 233333334444443
Q ss_pred CChHHHHHHHHHHH
Q 048179 494 QKWEEVAGVRKTMR 507 (589)
Q Consensus 494 g~~~~a~~~~~~m~ 507 (589)
+.-.++...+..+.
T Consensus 866 ~~~~~a~~~L~~al 879 (897)
T PRK13800 866 PGDPAARDALTTAL 879 (897)
T ss_pred CCCHHHHHHHHHHH
Confidence 22234444444433
No 370
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.61 E-value=46 Score=30.96 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHH-CCCCCCcccHHHHHHHHhc-cC-CHHHHHHHHHHHHH-hCCCCChhhHHHHHH
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIK-EDVRPDSSTFTVALKACVS-LM-DLKMGEEIWRKAVE-LGYGNDVFVGSSMLN 119 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~li~ 119 (589)
|..|+. ++.-..+|+++|+.... ..+--|......+++.... .+ ....--++.+.+.. .|-.++..+....+.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 23345678888874332 2345577777777777765 22 23333344444442 245677788888899
Q ss_pred HHHhCCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhCCCccHHHHHHH
Q 048179 120 LYVKCGKMNEAMVAFEKMQR-----KDLVCWSSMINGLVFNGQPREAVDAYK 166 (589)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 166 (589)
.++..+++..-.++++.... .|...|..+|......|+..-..++.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 99999999999888877653 477889999999999998765444433
No 371
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=75.53 E-value=50 Score=28.07 Aligned_cols=56 Identities=7% Similarity=0.103 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 216 TSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 216 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
..+++.+...|++-+|.++.++....+...-..++.+-.+.++..--..+|+-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777888887777776554445555566666666665544444444433
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.38 E-value=46 Score=32.93 Aligned_cols=53 Identities=6% Similarity=0.028 Sum_probs=34.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--cCCcHHHHHHHHHHHHH
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPDHS--TFASLLSALS--HSGLVEEGRYWFDLMVS 406 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 406 (589)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888888888888876 555544 3334444433 45677788888887665
No 373
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.58 E-value=1e+02 Score=31.17 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=47.7
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhC
Q 048179 40 GVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACV-SLMDLKMGEEIWRKAVELG 106 (589)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g 106 (589)
|+..|...+.-+-+.+.+.+.-.+|.+|.... +.++..|.......- ...+++.|+.+|...++..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 78889888887777777999999999998864 335555554443333 3334888999988887764
No 374
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.34 E-value=15 Score=31.28 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=30.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHH
Q 048179 452 LLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEV 499 (589)
Q Consensus 452 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 499 (589)
.+..|.+.|.+++|.+++++..+ +|++...-..|..+-.+...+...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Confidence 34558888888888888888888 776665544454444444443333
No 375
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.34 E-value=2.2e+02 Score=35.02 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=78.5
Q ss_pred hccCCHHHHHHHHHHHHHhCC--CCChhhHHHHHHHHHhCCChHHHHHHHHh-cCCCCcchHHHHHHHHHhCCCccHHHH
Q 048179 87 VSLMDLKMGEEIWRKAVELGY--GNDVFVGSSMLNLYVKCGKMNEAMVAFEK-MQRKDLVCWSSMINGLVFNGQPREAVD 163 (589)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 163 (589)
-+.+.+..|...++.-..... ......+-.+...|+.-++.|...-+... ...++. ..-|......|++..|..
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAA 1470 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHH
Confidence 345556666666665211000 01112333344467777777666655552 322322 223334456778888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHH-HHHHHhcCCHHHHHHHHhhcCCCC
Q 048179 164 AYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSL-VDMYAKTGHLDLASHVFKNMSRIN 242 (589)
Q Consensus 164 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~ 242 (589)
.|+.+.+.+ ++...+++.++......+.++...-..+-.... ..+....++++ +.+--+.++++....... ..+
T Consensus 1471 Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n 1545 (2382)
T KOG0890|consen 1471 CYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRN 1545 (2382)
T ss_pred HHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---ccc
Confidence 888877652 223556666666666666666555433333222 12222223322 333456667766666555 445
Q ss_pred eehHHHH
Q 048179 243 IVTWGAL 249 (589)
Q Consensus 243 ~~~~~~l 249 (589)
...|...
T Consensus 1546 ~e~w~~~ 1552 (2382)
T KOG0890|consen 1546 IEYWSVE 1552 (2382)
T ss_pred ccchhHH
Confidence 5566554
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.92 E-value=7.4 Score=27.89 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=32.3
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHH---HHHHhCCChHHHHHH
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVS---NFFAMEQKWEEVAGV 502 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~---~~~~~~g~~~~a~~~ 502 (589)
..++.+.|+..++++++..++.+.-+..|+ .+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888887776665555544 557777888777765
No 377
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.82 E-value=12 Score=30.72 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=62.6
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHHHHCC-----CCCCcccHHHHHHHHhccCC-HHHHHHHHHHHHHhCCCCChhhHHH
Q 048179 43 TYNSIIIAYSRKESPFEVLGLYNQMIKED-----VRPDSSTFTVALKACVSLMD-LKMGEEIWRKAVELGYGNDVFVGSS 116 (589)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 116 (589)
-.|+++.-....+++...+.+++.+..-. -..+..+|.+++++.+.... --.+..+|..+.+.+.+.++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46778887777788888888877764321 13467789999999977666 4567788888888888899999999
Q ss_pred HHHHHHhC
Q 048179 117 MLNLYVKC 124 (589)
Q Consensus 117 li~~~~~~ 124 (589)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99987754
No 378
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.24 E-value=15 Score=34.65 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC----CC--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMST----EP--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
+|.-=.+-|.+..++..|...|.+-.. .| +.+.|+.-..+-...||+..|+.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 444445678889999999999987522 23 355677777777788999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHH
Q 048179 490 FAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 490 ~~~~g~~~~a~~~~~~m 506 (589)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999988887776654
No 379
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=72.70 E-value=42 Score=26.46 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHh-------ccCCCCchhHH----HHHHHHHhCCChHHHHHHHHHH
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVL-------KLNPDDLGIHA----LVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 506 (589)
|...+..|..++...|+++++....++++ ++..+.-..|. .-+.++...|+.++|.+.|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34556667777888888887777766665 45555544443 3456677899999999988764
No 380
>PF13934 ELYS: Nuclear pore complex assembly
Probab=72.50 E-value=57 Score=29.46 Aligned_cols=106 Identities=21% Similarity=0.193 Sum_probs=53.4
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048179 346 WNVIIASYG--IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDL 423 (589)
Q Consensus 346 ~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 423 (589)
+...+.++- .++++++|++.+-+- .+.|+.. ..++.++...|+.+.|..+++.... ...+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 344444433 455666666655221 1222211 1355555656777777777766531 11222222333333
Q ss_pred HHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 048179 424 LARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHK 460 (589)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 460 (589)
..++.+.||..+.+....+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 566777777777776654322446666666655443
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.15 E-value=1.1e+02 Score=30.70 Aligned_cols=103 Identities=16% Similarity=0.061 Sum_probs=68.8
Q ss_pred HHhHhcCCHHHHHHHHHhcCC---C---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH--
Q 048179 320 DMYSKCGVPSCARALFDQMQS---R---------DLISWNVIIASYGIHGHGEEALSLFLQMIE-------TMVKPDH-- 378 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~-- 378 (589)
..+.-.|++.+|.+++...-- + ....||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345557888888888765431 1 224577777777777887777777776653 4555432
Q ss_pred ---------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048179 379 ---------STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLA 425 (589)
Q Consensus 379 ---------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 425 (589)
.+|+. .-.+.+.|++-.|.+.|......| ..++..|-.|..+|.
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 23433 335778899999999999988755 455667777777665
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.53 E-value=17 Score=36.97 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=72.1
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHhcC-C-CCChhHHHHHHHHHHhcCCchHH
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPT--EKHYACMVDLLARAGEVEEALKIVDSMS-T-EPGLAVWVALLSGCHNHKKFSIG 465 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a 465 (589)
-.|+...|...+..+. ...|. ......|...+.+.|...+|-.++.+.. . ...+.++..+.+++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3578888888877765 33443 2234456777778888888888876642 1 23455777888899999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 466 EKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
++.++.+++++|+++.+-..|-.+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999888777655533
No 383
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.60 E-value=12 Score=34.57 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=34.1
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
..+.|+.++|..+|+.++.+.|+++.++..++.......+.-+|-.++-++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 345677777777777777777777777777766666666666666666543
No 384
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.15 E-value=84 Score=31.53 Aligned_cols=206 Identities=16% Similarity=0.053 Sum_probs=100.9
Q ss_pred hhcCCChHHHHHHhccCCCCCcc--cHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcc--cHHHHHHHHhccCCHHHH
Q 048179 20 YGGKNDIVSARKLFEELPLRGVD--TYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSS--TFTVALKACVSLMDLKMG 95 (589)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 95 (589)
-.+.|+.+.+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+
T Consensus 9 A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 34567888888887765444322 1223344445556653 444455566555432 122344455566777665
Q ss_pred HHHHHHHHHhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCCccHHHHHHHHHH
Q 048179 96 EEIWRKAVELGYGNDV---FVGSSMLNLYVKCGKMNEAMVAFEKMQRKD---LVCWSSMINGLVFNGQPREAVDAYKRMK 169 (589)
Q Consensus 96 ~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 169 (589)
..+++ .|...+. ....+.+...+..|+.+-+..+++.-..++ ..-.+.+ ...+..|+.+- ++.+.
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~----v~~Ll 155 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKG----IELLI 155 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHH
Confidence 55443 3322111 111233444556777777776766544432 2223333 33345666443 33344
Q ss_pred HCCCCCChhh--HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 048179 170 KEGIDADEVV--MMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKV---QTSLVDMYAKTGHLDLASHVFKNMSRIN 242 (589)
Q Consensus 170 ~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (589)
+.|..++... -.+.+...+..|+.+. .+.+++.|..++... ..+++......|+.+-+.-+++.=..++
T Consensus 156 ~~g~~~~~~d~~g~TpL~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 156 DHKACLDIEDCCGCTPLIIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred hcCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 4454433211 1123333444566543 344555665554322 1245555566788777777766544433
No 385
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=69.81 E-value=1.1e+02 Score=29.73 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCC------Ch--hHHHHHHHHHHhcCCchHHHHHHHHHhccC---CCC----ch
Q 048179 417 YACMVDLLARAGEVEEALKIVDSMSTEP------GL--AVWVALLSGCHNHKKFSIGEKVAKKVLKLN---PDD----LG 481 (589)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 481 (589)
-..|.+.+-.+|+.++|..++.+.+.+. .. ...---+..|...+|+-.|.-+.++..... |+- ..
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 3456777888899999988888876431 00 011112456888999999988888876432 221 24
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEe
Q 048179 482 IHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIM 531 (589)
Q Consensus 482 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~ 531 (589)
.|..+..+..+.+.+=++.+.++..-.-|-.+....-|+++-..+-.|..
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 67888888889999999999999988877665544456665444444443
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.43 E-value=19 Score=29.58 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChH
Q 048179 430 VEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWE 497 (589)
Q Consensus 430 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 497 (589)
-+.|.++.+-|. ...............|++..|.++...++..+|+|..+-...+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 355666666664 23333444555778999999999999999999999999999999888776443
No 387
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.79 E-value=42 Score=29.98 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCc-------hHHHHHHHHHhccC--C----CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 449 WVALLSGCHNHKKF-------SIGEKVAKKVLKLN--P----DDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 449 ~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+.-+...|+..|+. ..|.+.|+++.+.+ | +.......+|.++.+.|++++|.+.+.++...+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34444556666664 34555555555433 2 234677789999999999999999999988643
No 388
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.43 E-value=1.4e+02 Score=30.15 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=47.4
Q ss_pred HHHHhhhcC-----CChHHHHHHhccCCCC-C--cccHHHHHHHHHcCC-CchhHHHHHHHHHHC--CCC-CCcccHHHH
Q 048179 15 RIIALYGGK-----NDIVSARKLFEELPLR-G--VDTYNSIIIAYSRKE-SPFEVLGLYNQMIKE--DVR-PDSSTFTVA 82 (589)
Q Consensus 15 ~l~~~~~~~-----g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~--~~~-p~~~~~~~l 82 (589)
+++-.|.++ .+++.|..+.+.||.- | ..+++.|-..|.... .+..+..++++..+. +++ ..-.....+
T Consensus 54 ~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQL 133 (629)
T KOG2300|consen 54 ALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQL 133 (629)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 344455553 3456666666666643 3 335666666666655 677777788777664 211 011112234
Q ss_pred HHHHhccCCHHHHHHHHH
Q 048179 83 LKACVSLMDLKMGEEIWR 100 (589)
Q Consensus 83 l~~~~~~~~~~~a~~~~~ 100 (589)
+....-..++..|.+++.
T Consensus 134 aql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 134 AQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHhhhccchhHHHHHh
Confidence 444555677777777643
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.71 E-value=14 Score=26.59 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=23.6
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHH
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKI 436 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 436 (589)
+....++|+..|....++..-.|+ ..++.+|+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666655543222222 23445555556666665555543
No 390
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.52 E-value=1.1e+02 Score=28.49 Aligned_cols=87 Identities=18% Similarity=0.046 Sum_probs=42.0
Q ss_pred HHhCCCccHHHHHHH----HHHHCCCCCChhhHHHHHHHHHccCCcH-HHHHHHHHHHHh---c--CCCchHHHHHHHHH
Q 048179 152 LVFNGQPREAVDAYK----RMKKEGIDADEVVMMGLIQACADLGDSR-FGLSVHGYSIRR---H--LNLDVKVQTSLVDM 221 (589)
Q Consensus 152 ~~~~g~~~~A~~~~~----~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~---~--~~~~~~~~~~l~~~ 221 (589)
+.+.|+...|-++-. ...+.+.++|......++..+...+.-+ .-..+.+.+++. + ...|+.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 445555544443332 2233455555555555555444433211 223333333332 2 23467788888889
Q ss_pred HHhcCCHHHHHHHHhhc
Q 048179 222 YAKTGHLDLASHVFKNM 238 (589)
Q Consensus 222 ~~~~g~~~~A~~~~~~~ 238 (589)
|.+.|++.+|+..|-.-
T Consensus 100 ~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHTT-HHHHHHHHHTS
T ss_pred HHhhccHHHHHHHHHhc
Confidence 99999988888877543
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.43 E-value=14 Score=21.89 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=8.0
Q ss_pred HHHHHHHhcCCchHHHHH
Q 048179 451 ALLSGCHNHKKFSIGEKV 468 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~ 468 (589)
.+...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333444445555555555
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.21 E-value=60 Score=26.10 Aligned_cols=42 Identities=5% Similarity=0.024 Sum_probs=35.3
Q ss_pred HHHHHHHHHhc--cCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 464 IGEKVAKKVLK--LNPDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 464 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
.+.++|+.+.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888874 5677888999999999999999999999875
No 393
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.95 E-value=54 Score=27.04 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=43.9
Q ss_pred hHhHHHHhhhcCCChHHHHHHhccCC---------CCCcccHHHHHHHHHcCCC-chhHHHHHHHHHHCCCCCCcccHHH
Q 048179 12 SVGRIIALYGGKNDIVSARKLFEELP---------LRGVDTYNSIIIAYSRKES-PFEVLGLYNQMIKEDVRPDSSTFTV 81 (589)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (589)
..|+++...+..+++.-...+++.+. ..+-.+|+.++.+.++... ---+..+|..|.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34555555555555555555555443 1234456666666655444 3345556666666566666666666
Q ss_pred HHHHHhcc
Q 048179 82 ALKACVSL 89 (589)
Q Consensus 82 ll~~~~~~ 89 (589)
++++|.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66666553
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.50 E-value=16 Score=22.84 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=13.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 048179 349 IIASYGIHGHGEEALSLFLQMIET 372 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~~ 372 (589)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 395
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=65.39 E-value=40 Score=31.02 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 450 VALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 450 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..+=+++...++++.|....++.+.++|+++.-+.--|-+|.+.|...-|.+-++...+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34445688889999999999999999999999899999999999999999998887554
No 396
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.35 E-value=2e+02 Score=30.81 Aligned_cols=43 Identities=23% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 048179 46 SIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSL 89 (589)
Q Consensus 46 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 89 (589)
.+|-.|.|.|++++|.++....... .......|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4566677788888888877554433 445566677777777654
No 397
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.26 E-value=1.1e+02 Score=28.90 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=14.1
Q ss_pred HHHHHHHHHhccCCCCchhHH
Q 048179 464 IGEKVAKKVLKLNPDDLGIHA 484 (589)
Q Consensus 464 ~a~~~~~~~~~~~p~~~~~~~ 484 (589)
-|.+...++.+.+|.-|..+.
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 366777788888886554443
No 398
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.98 E-value=56 Score=24.38 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CchhHHHHHHHHHhCCChH-HHHHHHHHH
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD--DLGIHALVSNFFAMEQKWE-EVAGVRKTM 506 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 506 (589)
|......+...+...|+++.|.+.+-.+++.+|+ +...-..|..++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455666666777777777777777777776654 3555666666666666643 344444443
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.71 E-value=49 Score=26.33 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 361 EALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 361 ~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
+..+-+.......+.|++......+++|-+.+++..|.++|+.++.+. .+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Confidence 344455566666788999999999999999999999999999988643 333335655543
No 400
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.28 E-value=2.1e+02 Score=30.33 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=48.8
Q ss_pred HHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHH-HHHHh--hcC-----------CCCeehHHHHHHH
Q 048179 187 CADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLA-SHVFK--NMS-----------RINIVTWGALISG 252 (589)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~--~~~-----------~~~~~~~~~li~~ 252 (589)
..-.|+...+.+...... .|..+-..+.+.+..+|-++.. ..-+. .+. -.+...|..-+..
T Consensus 307 ~i~~~d~~~vL~~~~~~~-----~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~y 381 (566)
T PF07575_consen 307 AIFEGDIESVLKEISSLF-----DDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIGY 381 (566)
T ss_dssp HHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHc-----cchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 334677777666655432 2344555666666666665510 00000 000 0122334444444
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHH
Q 048179 253 FAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYT 304 (589)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 304 (589)
+...++.. ....++++..-.-.+......++..|.+.|-.+.+..+...+
T Consensus 382 L~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 382 LSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333222 444555554433345556667777777777777777666544
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.00 E-value=60 Score=26.33 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=42.5
Q ss_pred CChhhHHHHHHHHHHcCCH---HHHHHHHHhcC--CCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchh
Q 048179 412 PTEKHYACMVDLLARAGEV---EEALKIVDSMS--TEP--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGI 482 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 482 (589)
++..+--.+..++.+..+. .+.+.+++..- ..| +.....-|.-+|.+.++++++.+..+.+++.+|+|..+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3333444445555554433 33344555442 122 23344455667889999999999999999999987643
No 402
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.35 E-value=18 Score=32.19 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=40.9
Q ss_pred HhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
...+|.+.+.+++.+++++-|+....|..++..-.+.|+++.|.+.+++..+....
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 45567777777777777777777777777777777777777777777776665443
No 403
>PRK10941 hypothetical protein; Provisional
Probab=62.34 E-value=74 Score=29.61 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 418 ACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
+.+-.+|.+.++++.|++..+.+. ..| |+.-+.--+-.|.+.|.+..|..-++..++.-|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 345567778888888888887763 244 44556666667888888888888888888888877755443
No 404
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.96 E-value=1.9e+02 Score=29.04 Aligned_cols=207 Identities=12% Similarity=0.037 Sum_probs=105.5
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChh--hHHHHHHHHHhCCC
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACVSLMDLKMGEEIWRKAVELGYGNDVF--VGSSMLNLYVKCGK 126 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 126 (589)
.++.|+.+ +++.+.+.|..|+... ..+.+..++..|+.+. .+.+.+.|..|+.. ....-+...+..|+
T Consensus 9 A~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34455554 3445556677666533 3445556667777654 44555666555432 12234555667899
Q ss_pred hHHHHHHHHhcCCC----CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhh--HHHHHHHHHccCCcHHHHHHH
Q 048179 127 MNEAMVAFEKMQRK----DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVV--MMGLIQACADLGDSRFGLSVH 200 (589)
Q Consensus 127 ~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~ 200 (589)
.+.+..+++.-... +..-++.| ...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 98888887754422 11122333 333445554 45566666776665432 123444455667765544443
Q ss_pred HHHHHhcCCCchH--HHHHHHHHHHhcCCHHHHHHHHhhcCCCCee---hHHHHHHHHHhCCChhHHHHHHHHHHhcCCC
Q 048179 201 GYSIRRHLNLDVK--VQTSLVDMYAKTGHLDLASHVFKNMSRINIV---TWGALISGFAQNGLAGSTLELLMEMQSCGFE 275 (589)
Q Consensus 201 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 275 (589)
+.|..++.. ...+.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..
T Consensus 156 ----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad 227 (413)
T PHA02875 156 ----DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGAD 227 (413)
T ss_pred ----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcC
Confidence 444333211 1122334455567777766666654443322 1123344334555543 44455566666
Q ss_pred CCH
Q 048179 276 PDS 278 (589)
Q Consensus 276 p~~ 278 (589)
++.
T Consensus 228 ~n~ 230 (413)
T PHA02875 228 CNI 230 (413)
T ss_pred cch
Confidence 654
No 405
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.84 E-value=1.7e+02 Score=28.67 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCC-CchhHHHHHHHHH-hCCChHHHHHHHHHHH
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPD-DLGIHALVSNFFA-MEQKWEEVAGVRKTMR 507 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 507 (589)
+..+.+.|-+.-|.+..+-++.++|. ||-.-...++.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 34466677777777777777777776 6655555555555 5566666666665543
No 406
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.16 E-value=1.6e+02 Score=27.62 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=64.6
Q ss_pred CCccHHHHHHHHHHH-CCCCCChhhHHHHHHHHHc-cCC-cHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCCHHHH
Q 048179 156 GQPREAVDAYKRMKK-EGIDADEVVMMGLIQACAD-LGD-SRFGLSVHGYSIR-RHLNLDVKVQTSLVDMYAKTGHLDLA 231 (589)
Q Consensus 156 g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (589)
....+|+++|+..-. ..+.-|..+...+++.... .+. ...--++.+.+.. .+-.++..+....++.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334455555553211 2344455666666665544 221 2222223333332 23456677777788888888888888
Q ss_pred HHHHhhcCC-----CCeehHHHHHHHHHhCCChhHHHHHH
Q 048179 232 SHVFKNMSR-----INIVTWGALISGFAQNGLAGSTLELL 266 (589)
Q Consensus 232 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (589)
.++++.... .|...|..+|......|+..-...+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 888776543 47778888888888888865444433
No 407
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.38 E-value=72 Score=29.52 Aligned_cols=87 Identities=15% Similarity=0.068 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHC--CCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 048179 46 SIIIAYSRKESPFEVLGLYNQMIKE--DVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVK 123 (589)
Q Consensus 46 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 123 (589)
.=|.+++..++|.+++...-+.-+. .++|. ....-|-.|++.+.+..+.++-..-++..-.-+..-|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3466777778887777655443221 23332 2333334466777777666666555544222233345555555543
Q ss_pred -----CCChHHHHHHH
Q 048179 124 -----CGKMNEAMVAF 134 (589)
Q Consensus 124 -----~g~~~~A~~~~ 134 (589)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 36666666554
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.21 E-value=45 Score=29.19 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=18.2
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 443 EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 443 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34555555555555555555555555555555555
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.37 E-value=74 Score=23.50 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHH
Q 048179 96 EEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREA 161 (589)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 161 (589)
.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. +....|...+.++...|+-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3555555555532 22222222222224466677777777776 6666667777766666654433
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.18 E-value=92 Score=24.06 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=26.7
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETM 373 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 373 (589)
+..+...|++++|...=.....||...|-++-. .+.|-.+++...+.++...|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 334556666666633333334466666655533 35666666666666655544
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.46 E-value=17 Score=32.24 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=35.7
Q ss_pred HHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 048179 424 LARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
....|+.+.|.+++.+... -| ....|--+...--+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4455666666666666522 22 45566666666667777777777777777777654
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.58 E-value=20 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048179 54 KESPFEVLGLYNQMIKEDVRPDSSTFTVALKAC 86 (589)
Q Consensus 54 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 86 (589)
.|.-.+|..+|+.|+++|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3556778888888888887776 466666554
No 413
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.67 E-value=2.6e+02 Score=28.47 Aligned_cols=236 Identities=10% Similarity=-0.013 Sum_probs=121.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccC------chhhHHHHHHHHh--h-cCCCChhHHHHHHHHhHhcCCHHH-HH
Q 048179 263 LELLMEMQSCGFEPDSVSLVSALLACAQIG------FLKLGKSIHGYTV--R-RFDFNLVLGTSVIDMYSKCGVPSC-AR 332 (589)
Q Consensus 263 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~-A~ 332 (589)
..+|++..+. -|+...+...|..|...- .+.....+++... . ..+.....|..+.-++.+.....+ |.
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 3555555543 344445555555553322 2333344444444 2 223345556666666666555433 33
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcC-CHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-HHHH--HHHHHHHHHh
Q 048179 333 ALFDQMQSRDLISWNVIIASYGIHG-HGEE-ALSLFLQMIETMVKPDHSTFASLLSALSHSGL-VEEG--RYWFDLMVSK 407 (589)
Q Consensus 333 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~-~~~a--~~~~~~~~~~ 407 (589)
.+.......+...|-.-+....+.. +++- -.++|......-..+-...+++.. .|+ .... ..++..+.+
T Consensus 380 ~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s- 453 (568)
T KOG2396|consen 380 KLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS- 453 (568)
T ss_pred HhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH-
Confidence 3433555566666665555544322 2111 112223333221122222222222 122 1111 112233332
Q ss_pred cCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHH--HhcCCchHHHHHHHHHhccCCCCchh
Q 048179 408 YKIQPTEK-HYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGC--HNHKKFSIGEKVAKKVLKLNPDDLGI 482 (589)
Q Consensus 408 ~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 482 (589)
...|+.. .-+.+++-+.+.|-..+|...+.+... +|+...+..++.-- ....+..-+...++.+..-...++..
T Consensus 454 -~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 454 -VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred -hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 2334433 345677888888888888888888743 35666777666542 22334677778888887544467777
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 483 HALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 483 ~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
|......-...|+.+.+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 8777766667888887777665554
No 414
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.32 E-value=1.3e+02 Score=26.90 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH
Q 048179 344 ISWNVIIASYGIHGHGEEALSLFLQMIETMVKP---DHSTF--ASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYA 418 (589)
Q Consensus 344 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 418 (589)
.-.|.|+--|..+..+.+|.+.|.+ +.|+.| |..++ ..-+......|+.++|++....+... -+..|.+.+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 3455666656666566666666643 445554 22222 23345556778888887777766543 3334432222
Q ss_pred HHH----HHHHHcCCHHHHHHHHHh
Q 048179 419 CMV----DLLARAGEVEEALKIVDS 439 (589)
Q Consensus 419 ~l~----~~~~~~g~~~~A~~~~~~ 439 (589)
.|. --+.|.|..++|+++.+.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222 124577778888887766
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.09 E-value=82 Score=31.22 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHh--------ccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVL--------KLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
+...|++..+-.||+..|.++++-+- +.-+-+.+++..+|-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667778777777765442 1224466778888888888999999988888764
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.02 E-value=66 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777778888888888777765
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.97 E-value=45 Score=29.23 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=33.0
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
...+.+......+.+.+.-...|+...|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555444444444355677777777777777777777777777765
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.86 E-value=49 Score=24.86 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 450 VALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 450 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
-.+.......|+.++|...+++++++-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555778889999999988888653
No 419
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.31 E-value=1.4e+02 Score=27.74 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=41.9
Q ss_pred HHHHHhCCCccHHHHHHHHHHHC--CCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh--
Q 048179 149 INGLVFNGQPREAVDAYKRMKKE--GIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAK-- 224 (589)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 224 (589)
|.+++..++|.+++...-+--+. .++| ...-.-|-.|.+.+++..+.++-...++..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45666666666665543332221 1222 22333334455666666665555555544333333345555555543
Q ss_pred ---cCCHHHHHHHH
Q 048179 225 ---TGHLDLASHVF 235 (589)
Q Consensus 225 ---~g~~~~A~~~~ 235 (589)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666655
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.15 E-value=89 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=25.1
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 244 VTWGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
.-|..|+.-|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4588899999999999999999999877
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.93 E-value=86 Score=25.03 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHH
Q 048179 262 TLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSV 318 (589)
Q Consensus 262 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 318 (589)
..+-++....-.+.|++......+++|.+.+++..|..+++-+.....+...+|-.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344455555566788888888888888888888888888887773333333344433
No 422
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.07 E-value=2.4e+02 Score=27.22 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=71.7
Q ss_pred HHHHHHHHhc-CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh---CCChHHHHHHHHH
Q 048179 431 EEALKIVDSM-STEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM---EQKWEEVAGVRKT 505 (589)
Q Consensus 431 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 505 (589)
+.-+.+++++ ...| +...+..++..+.+.-+.+...+-+++++...|+++..|..+.+.... .-.+++...++.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3344455553 2234 455677788888888888888888999999999999888887766444 2356677777766
Q ss_pred HHhCCCccCCceeEEEECCEEEEEEecCCCCCCh----HHHHHHHHHHHHHHHhcCCcc
Q 048179 506 MRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQY----EDIVYVLKKLYLEMRAISSWL 560 (589)
Q Consensus 506 m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 560 (589)
....-.....+. ..+|+.. ..+...+.++..-++++||+.
T Consensus 128 ~l~~L~~~~~~~---------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 128 CLRALSRRRSGR---------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHhhccc---------------cccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 654211111110 1233333 233355667778889999853
No 423
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.92 E-value=42 Score=31.41 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=54.2
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHH-HHHHHhcCCchHHHHHHHHHhccCCCCchhHHHH
Q 048179 410 IQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVAL-LSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALV 486 (589)
Q Consensus 410 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 486 (589)
..-|+..|...+.-..+.|.+.+.-.++.+.. ..| |+..|-.. -.-+..+++++.+..++.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34455666655555556666667777776653 234 55566442 2236788999999999999999999999888765
Q ss_pred HH
Q 048179 487 SN 488 (589)
Q Consensus 487 ~~ 488 (589)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 44
No 424
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.89 E-value=51 Score=32.75 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=29.7
Q ss_pred HHhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 048179 437 VDSMSTEPG--LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 437 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
|.....+|. ..++.+-+..+.+++|+..|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333334443 3466777888999999999999999999999854
No 425
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.79 E-value=2.8e+02 Score=28.10 Aligned_cols=105 Identities=6% Similarity=-0.095 Sum_probs=67.7
Q ss_pred hcCCcHHHHHHHHHHHH--HhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHhcC----------CCC-------
Q 048179 389 SHSGLVEEGRYWFDLMV--SKYKIQPT-----EKHYACMVDLLARAGEVEEALKIVDSMS----------TEP------- 444 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~--~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p------- 444 (589)
.-.|++.+|.+.+-..- +..|...+ -..|+.|.-...+.|.+.-+..+|.+.. .+|
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34588888888765432 11121112 1234556666667777777666665542 111
Q ss_pred ---ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 445 ---GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 445 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
.........-.+...|+.-.|.+.|.++......+|..|..|+.++...
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1223334455677889999999999999999988999999999887754
No 426
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=50.67 E-value=97 Score=31.39 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=58.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC--------CCchhHH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP--------DDLGIHA 484 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--------~~~~~~~ 484 (589)
++..|-..+.-|...++|++|.++.+-.. ....|.++......+.+..-++.+|..+.+++. +-+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456777788888899999998887765 456788887777777787777777776665442 1112223
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q 048179 485 LVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 485 ~l~~~~~~~g~~~~a~~~~~ 504 (589)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444555666666666554
No 427
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.55 E-value=4.3e+02 Score=30.16 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=16.1
Q ss_pred HHHHhHhcCCHHHHHHHHHhcC
Q 048179 318 VIDMYSKCGVPSCARALFDQMQ 339 (589)
Q Consensus 318 l~~~~~~~g~~~~A~~~~~~~~ 339 (589)
+..+|..+|...+|...|.+..
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHh
Confidence 3445777888888888887765
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.19 E-value=1e+02 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=20.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHH
Q 048179 421 VDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSG 455 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 455 (589)
+-.|.+.|.+++|.+++++....|+.......+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 44566777777777777776555555444444433
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.15 E-value=2.6e+02 Score=27.55 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=59.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCCH
Q 048179 314 LGTSVIDMYSKCGVPSCARALFDQMQS------RDLISWNVIIASYGIHGHGEEALSLFLQMIET---------MVKPDH 378 (589)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~ 378 (589)
.+.-+.+.|..||+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|........+.... .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 346778899999999999999998664 23345666677667778877777666665543 134444
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048179 379 STFASLLSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 379 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 405 (589)
..+..+...+. +++..|.+.|-...
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 55555555444 36777766665443
No 430
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.13 E-value=2.8e+02 Score=27.86 Aligned_cols=167 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHC---CC-CCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHH
Q 048179 56 SPFEVLGLYNQMIKE---DV-RPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAM 131 (589)
Q Consensus 56 ~~~~a~~~~~~m~~~---~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 131 (589)
..++...++...... |+ ..+......++..+ .|+...+..+++.+... .-......+.++.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~ 216 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEAL 216 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHH
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhC---CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-----cHHHHHHHHHH
Q 048179 132 VAFEKMQRKDLVCWSSMINGLVFN---GQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGD-----SRFGLSVHGYS 203 (589)
Q Consensus 132 ~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~ 203 (589)
........++...+..+++++.+. ++++.|+..+..|.+.|..|....-..+..++-..|. ...+...++..
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048179 204 IRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
...|++--.....-.+-.++.+-+-..+...++.
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 431
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.01 E-value=2.1e+02 Score=30.01 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=62.9
Q ss_pred HHHcCCHHHHHHHHHh-cCCCC-C------hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCC
Q 048179 424 LARAGEVEEALKIVDS-MSTEP-G------LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 424 ~~~~g~~~~A~~~~~~-~~~~p-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
..+..++..+.++|.. |..-| | ....+.|.-+|....+.|.|.++++++-+.+|.++-.-..+..+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3456677777777765 32211 1 22355666667788889999999999999999888888888888888899
Q ss_pred hHHHHHHHHHHHhC
Q 048179 496 WEEVAGVRKTMRKS 509 (589)
Q Consensus 496 ~~~a~~~~~~m~~~ 509 (589)
-++|+.........
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99998888777643
No 432
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.96 E-value=22 Score=38.13 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchH
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 464 (589)
|..+.+.|-.+-|+.+.+.-..+| .+...+|+++.|++.-.+.. |..+|..|+.....+|+.+.
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHH
Confidence 344455666666665554433222 33446777777777666654 56677777777777777777
Q ss_pred HHHHHHHHhc
Q 048179 465 GEKVAKKVLK 474 (589)
Q Consensus 465 a~~~~~~~~~ 474 (589)
|+..|++...
T Consensus 691 aEm~yQ~~kn 700 (1202)
T KOG0292|consen 691 AEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHhhh
Confidence 7777776654
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.80 E-value=4.1e+02 Score=29.61 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHHhhhcCCChHHHHHHhccCCCCCcc-----cHHHHHH---HHHcCCCchhHHHHHHHHH
Q 048179 16 IIALYGGKNDIVSARKLFEELPLRGVD-----TYNSIII---AYSRKESPFEVLGLYNQMI 68 (589)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~li~---~~~~~g~~~~a~~~~~~m~ 68 (589)
-+..+....++++|..+-+....++.. .+..... -+..++++++|.+.|.++.
T Consensus 313 qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 313 QIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 333444444466666555554444322 1111111 1345566666666665543
No 434
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.30 E-value=25 Score=28.29 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=26.4
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048179 152 LVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQAC 187 (589)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 187 (589)
....|.-.+|-.+|.+|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999999885 66666654
No 435
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.14 E-value=2.5e+02 Score=26.89 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 048179 393 LVEEGRYWFDLMVSKYKI---QPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVA 469 (589)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 469 (589)
-.+.|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888888763111 34556666777777888887776666666666677888888999988888988888899
Q ss_pred HHHhccC-CCCchhHHHHHHHH-HhCCChHHHHHHHH
Q 048179 470 KKVLKLN-PDDLGIHALVSNFF-AMEQKWEEVAGVRK 504 (589)
Q Consensus 470 ~~~~~~~-p~~~~~~~~l~~~~-~~~g~~~~a~~~~~ 504 (589)
+.++.-+ -........+..+. ...--.+.+.+.++
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 9888732 12223444444443 22222255555543
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.76 E-value=2.4e+02 Score=26.45 Aligned_cols=147 Identities=5% Similarity=-0.089 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-----
Q 048179 358 HGEEALSLFLQMIETMVKPDHSTFASLLSALSH----SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAG----- 428 (589)
Q Consensus 358 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 428 (589)
+..+|..+|+.+.+.|..+ ....|...+.. ..+..+|..+|+.+.+. |..+.......+...|..-.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcc
Confidence 4566666666555554221 11223333332 23666777777766654 43332122333333333321
Q ss_pred --CHHHHHHHHHhcCCCCChhHHHHHHHHHH----hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC--------
Q 048179 429 --EVEEALKIVDSMSTEPGLAVWVALLSGCH----NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ-------- 494 (589)
Q Consensus 429 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 494 (589)
+...|...+.++...-+......+...|. ...|.++|...|.++-+.+. ......++ ++...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 22356667766544334444444443332 23477888888888877766 55556666 555555
Q ss_pred -------ChHHHHHHHHHHHhCCC
Q 048179 495 -------KWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 495 -------~~~~a~~~~~~m~~~g~ 511 (589)
+...|...+......+.
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCC
Confidence 66666666666655443
No 437
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.62 E-value=19 Score=35.70 Aligned_cols=109 Identities=9% Similarity=-0.041 Sum_probs=72.2
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEE--------ECC
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVE--------VNG 524 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~--------~~~ 524 (589)
+......++++.|+..+.++++++|+++..+..-+.++.+.+++..|+.-...+.+..+.-..++-.-. ...
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 344567789999999999999999999999999999999999999999988888775533222211000 000
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCccc
Q 048179 525 ELHAFIMEDKSHNQYEDIVYVLKKLYLEMRAISSWLQ 561 (589)
Q Consensus 525 ~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 561 (589)
..-.|..+-...|.-......+.+-...+++.++.+.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA 127 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 0111222224456655555666666666666665544
No 438
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.55 E-value=49 Score=19.96 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 481 GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+|..||.+-...+++++|.+-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999988887654
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.52 E-value=2.2e+02 Score=25.91 Aligned_cols=162 Identities=12% Similarity=0.101 Sum_probs=78.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048179 349 IIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSH-SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA 427 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 427 (589)
++...-+.++++++...++++...+...+..--+.+-.+|-. .|....+++.+..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455566778888888888888887655555444444444421 23344455555555443111111 2222222222111
Q ss_pred ------CCHHHHHHHHHhcCC----CCChhHHHHHHHH-H-H---h--cC-----CchHHHHHHHHHhc-----cCCCCc
Q 048179 428 ------GEVEEALKIVDSMST----EPGLAVWVALLSG-C-H---N--HK-----KFSIGEKVAKKVLK-----LNPDDL 480 (589)
Q Consensus 428 ------g~~~~A~~~~~~~~~----~p~~~~~~~l~~~-~-~---~--~~-----~~~~a~~~~~~~~~-----~~p~~~ 480 (589)
.--.+.+.+++.... .+...++-.-+.| | + . .| -.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 112344455554321 1222222222222 1 1 1 11 23667777777764 557666
Q ss_pred hhHHH---HHH-HHHhCCChHHHHHHHHHHHhCCC
Q 048179 481 GIHAL---VSN-FFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 481 ~~~~~---l~~-~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
..+-. .+. .|--.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 43222 222 34568999999999888876544
No 440
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.49 E-value=2.4e+02 Score=26.21 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTF-ASLLSAL 388 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~a~ 388 (589)
.++.+...+...|.+.|++.+|+.-|-.-.+++...+-.++.-.... |.+.+...| ...+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~----------------~~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK----------------GYPSEADLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH----------------TSS--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh----------------cCCcchhHHHHHHHHHH
Confidence 46788888999999999999888877544333332222222222222 222222211 1222234
Q ss_pred hcCCcHHHHHHHHHHHHHh
Q 048179 389 SHSGLVEEGRYWFDLMVSK 407 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~ 407 (589)
.-.++...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 4567888888877776654
No 441
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.02 E-value=1.2e+02 Score=31.35 Aligned_cols=133 Identities=16% Similarity=0.080 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHhc-CCCC--ChhH
Q 048179 375 KPDHSTFASLLSALSHSG--LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR-AGEVEEALKIVDSM-STEP--GLAV 448 (589)
Q Consensus 375 ~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~p--~~~~ 448 (589)
.|+..+...++.-....- .-+-|-.++-.|.. .+.|--...+ +...|.| .|+...|.+-+... ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 456666655554433221 22334445555543 3333322222 2334444 68999999887775 2333 3445
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
...|.+...+.|-.-.|-.++.+.+.+.-..|-.+..++++|....+.+.|++.++.+.+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 66777777777888889999999999887788899999999999999999999999887644
No 442
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=46.91 E-value=2.7e+02 Score=26.72 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCCHH
Q 048179 359 GEEALSLFLQMIETMVKPDHSTFASLLSALS------HSGLVEEGRYWFDLMVSKYKIQPTEK-HYACMVDLLARAGEVE 431 (589)
Q Consensus 359 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~------~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 431 (589)
++++..++++....+ .|-++..-..|.+|- ..-+|.....+|+.+. .+.|++. +.|- .-+.+...-.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehH-HHHHHHhhhHH
Confidence 478888888888877 488887777776653 2346777777888776 3456643 3443 33444555567
Q ss_pred HHHHHHHhcCCCCC---hh-HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchh
Q 048179 432 EALKIVDSMSTEPG---LA-VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGI 482 (589)
Q Consensus 432 ~A~~~~~~~~~~p~---~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 482 (589)
.++..++.+..+|- .. .+..-...+.+.|+.++|...|++++.+.++....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 77888877765532 22 33444455889999999999999999998765543
No 443
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.47 E-value=3e+02 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHH
Q 048179 144 CWSSMINGLVFNGQPREAVDAYKRMKK 170 (589)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 170 (589)
.+.-+...|...|+.+.|++.|.+.++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~Rd 178 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARD 178 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhh
Confidence 345555666666666666666666443
No 444
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.66 E-value=2.6e+02 Score=26.13 Aligned_cols=132 Identities=10% Similarity=-0.034 Sum_probs=66.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHhccCchhhHHHHHHHHh---h--cCCCChhHHH
Q 048179 249 LISGFAQNGLAGSTLELLMEMQSCGFEPDSVS-------LVSALLACAQIGFLKLGKSIHGYTV---R--RFDFNLVLGT 316 (589)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~---~--~~~~~~~~~~ 316 (589)
+.+-..+.+++++|+..+.+....|+..|..+ ...+...+...|+...-.+...... . .-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556778899999999999998887766544 4455556666665544333322221 1 1122333445
Q ss_pred HHHHHhHhc-CCHHHHHHHHHhcCC---C--Ch----hHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHH
Q 048179 317 SVIDMYSKC-GVPSCARALFDQMQS---R--DL----ISWNVIIASYGIHGHGEEALSLF----LQMIETMVKPDHST 380 (589)
Q Consensus 317 ~l~~~~~~~-g~~~~A~~~~~~~~~---~--~~----~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t 380 (589)
+|++.+... ..++.-..+.....+ + -. ..-..+|..+.+.|.+.+|+.+. .++.+..-+|+..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 555554432 234444444433321 0 00 11123455566666666666543 33334444454433
No 445
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.85 E-value=2.7e+02 Score=25.75 Aligned_cols=180 Identities=11% Similarity=0.089 Sum_probs=89.7
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhccCchhhHHHHHHHHh----hcC--CCChhHHHHHHHHhHhc
Q 048179 255 QNGLAGSTLELLMEMQSCGFEPDS---VSLVSALLACAQIGFLKLGKSIHGYTV----RRF--DFNLVLGTSVIDMYSKC 325 (589)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~ 325 (589)
+...+++|+.-|.+..+..-.--. ..+..++....+.+++++....+..+. +.+ ..+....|++++..+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 455788999999988775322222 234455666677777776666555544 111 22344456666655555
Q ss_pred CCHHHHHHHHHhcCC-----CChhHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCH-------HHHHHHH
Q 048179 326 GVPSCARALFDQMQS-----RDLISW----NVIIASYGIHGHGEEALSLFLQMIETMVK----PDH-------STFASLL 385 (589)
Q Consensus 326 g~~~~A~~~~~~~~~-----~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~-------~t~~~ll 385 (589)
.+.+--...|+.-.+ .+...| ..+...|...+.+.+..++++++....-. -|. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 555544444433221 222222 33455566666666666666666543211 111 1233334
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH----HHHHHHcCCHHHHH
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACM----VDLLARAGEVEEAL 434 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~ 434 (589)
..|....+-..-..+++.....-.-.|.+.....+ ..+..+.|++++|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 44555555555555565544321223333332221 12334556666655
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.77 E-value=44 Score=31.14 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=32.9
Q ss_pred HcCCHHHHHHHHHhc-CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 426 RAGEVEEALKIVDSM-STEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 426 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
+.|+.++|..+|+.. ...|+ +.++..+..-.-.+++.-+|-+++-+++.++|.+..++..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 456666666666553 22332 3333334444444566666667777777777766655443
No 447
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=43.73 E-value=4.4e+02 Score=28.22 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=86.5
Q ss_pred cccHHHHHHHHH-cCCCchhHHHHHHHHHHCCCCCCcc-----cHHHHHHHHhccCCHHHHHHHHHHHHHhCC----CCC
Q 048179 41 VDTYNSIIIAYS-RKESPFEVLGLYNQMIKEDVRPDSS-----TFTVALKACVSLMDLKMGEEIWRKAVELGY----GND 110 (589)
Q Consensus 41 ~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~ 110 (589)
..++--+...+. ...+++.|...+++.....-.++-. .-..+++.+.+.+. ..|.+.++..++.-- .+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~-~~a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP-KAALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhccCchhH
Confidence 445555666655 5678888888888765433222211 11233444444443 338877777665421 122
Q ss_pred hhhHHHH-HHHHHhCCChHHHHHHHHhcCC-------CCcchHHHHHHHHH--hCCCccHHHHHHHHHHHCCC-------
Q 048179 111 VFVGSSM-LNLYVKCGKMNEAMVAFEKMQR-------KDLVCWSSMINGLV--FNGQPREAVDAYKRMKKEGI------- 173 (589)
Q Consensus 111 ~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~------- 173 (589)
...+.-+ +..+...++...|.+.++.+.. +-+..+-.++.+.. +.+.++++++.++++.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2233333 3333333788888888877653 12223333444333 45666777777777643211
Q ss_pred --CCChhhHHHHHHHHH--ccCCcHHHHHHHHHHH
Q 048179 174 --DADEVVMMGLIQACA--DLGDSRFGLSVHGYSI 204 (589)
Q Consensus 174 --~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 204 (589)
.|-..+|..++..++ ..|+++.+...+..+.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234455666666554 4566666666555443
No 448
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.38 E-value=2.2e+02 Score=24.78 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=47.7
Q ss_pred HhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC------
Q 048179 135 EKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHL------ 208 (589)
Q Consensus 135 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------ 208 (589)
++.+++-.+.|-.....-++.-+.+++-+.|- ..+-.+++-.|-+.-++.+++++++.+.+..+
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33333444555555555555544444333221 11223455566666677777777776654321
Q ss_pred --------CCchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048179 209 --------NLDVKVQTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 209 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
.+.-.+.|.....+.++|.+|.|..++++
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 12223455555666666666666666653
No 449
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.26 E-value=47 Score=19.15 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=18.4
Q ss_pred CchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 461 KFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 461 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
.++.|..+|++.+...| ++..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 46778888888887776 4666665543
No 450
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.20 E-value=41 Score=30.26 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=48.3
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 454 SGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 454 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+-|.....++.|+..+.+++.++|..+..|..-+..|.+..+|+.+..--.+..+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 4477778899999999999999999999999999999999999998877666654
No 451
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.07 E-value=3.1e+02 Score=28.35 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=19.1
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcC
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQ 339 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~ 339 (589)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 456778888888888888888775
No 452
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.46 E-value=2.6e+02 Score=25.26 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=57.8
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChh-HH
Q 048179 371 ETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLA-VW 449 (589)
Q Consensus 371 ~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-~~ 449 (589)
..+++|....+..-+.. ...+++++|.+.+-.- .+.|+ .-..++.++.+.|+.+.|+.+++.....++.. ..
T Consensus 72 ~f~ip~~~~~~~~g~W~-LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~ 144 (226)
T PF13934_consen 72 AFGIPPKYIKFIQGFWL-LDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEAL 144 (226)
T ss_pred HhCCCHHHHHHHHHHHH-hChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHH
Confidence 34566554443332222 2347777887776322 22233 23357888888999999999999986543332 33
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 450 VALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 450 ~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
..++.+ ..++.+.+|....+...+
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCch
Confidence 333333 667888888877666544
No 453
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.32 E-value=90 Score=19.92 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDHSTFASLLS 386 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 386 (589)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666677777777777777766666665553
No 454
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.24 E-value=3.2e+02 Score=26.28 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH---cCCHHHHHHH
Q 048179 360 EEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR---AGEVEEALKI 436 (589)
Q Consensus 360 ~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~ 436 (589)
+.-+.++++.++.+ +-+......++..+.+..+.++..+-++.+... .+-+...|...++.... .-.+++...+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 45566777777763 334556667778888888888888888888764 22346667666665443 2345555555
Q ss_pred HHhc-------CCC--------CC--hhH---HHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 437 VDSM-------STE--------PG--LAV---WVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 437 ~~~~-------~~~--------p~--~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
|.+. ... ++ ... +..+..-+...|..+.|..+++-+++++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5442 111 11 112 2223333568899999999999999976
No 455
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.02 E-value=55 Score=30.67 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASL 384 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 384 (589)
-|+..|..-.+.|++++|+.+++|..+.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888888999999999999999988876555555443
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.51 E-value=4.3e+02 Score=29.16 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRY 399 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~ 399 (589)
.....+|+++.|++.-.++- +...|..|...-..+|+.+-|...|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988776665 456899999999999999999999887653 2233334566788888777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
+.+.+..+ -|... ....-.=.|+.++-.++++....-|-. |. ....+|.-++|+++.++.-.
T Consensus 720 m~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 76666443 22111 111112358888888888887643322 11 23467888888888888765
No 457
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.36 E-value=86 Score=25.03 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=31.7
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 469 AKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 469 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+.++.++|..|..-...+.+|....+.+-|.-.-+..++
T Consensus 57 vrslL~i~pPEPd~~~~~aKaY~EE~D~~VA~mMAr~vre 96 (165)
T COG4016 57 VRSLLDIKPPEPDFNYKYAKAYSEEKDLEVAKMMARGVRE 96 (165)
T ss_pred HHHHhCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5667888988888888889999999888877766666554
No 458
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.88 E-value=3.7e+02 Score=26.56 Aligned_cols=25 Identities=4% Similarity=-0.254 Sum_probs=13.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPD 377 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~ 377 (589)
+.+.+++..|.++|+++....++|+
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChh
Confidence 4445556666666666655544333
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.83 E-value=1.4e+02 Score=31.37 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=11.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHH
Q 048179 383 SLLSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 383 ~ll~a~~~~g~~~~a~~~~~~~~ 405 (589)
+|+.+|...|++..+.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 44445555555555555544443
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.73 E-value=2.8e+02 Score=27.45 Aligned_cols=56 Identities=7% Similarity=0.024 Sum_probs=37.1
Q ss_pred HHHHcCCCchhHHHHHHHHHHCCCCCCcc--cHHHHHHHHh--ccCCHHHHHHHHHHHHHh
Q 048179 49 IAYSRKESPFEVLGLYNQMIKEDVRPDSS--TFTVALKACV--SLMDLKMGEEIWRKAVEL 105 (589)
Q Consensus 49 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 105 (589)
..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788899999999988877 555554 2333334443 345677888888876654
No 461
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.71 E-value=9.9e+02 Score=31.48 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=8.9
Q ss_pred HHHhCCCccHHHHHHHHH
Q 048179 151 GLVFNGQPREAVDAYKRM 168 (589)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m 168 (589)
.|.+.|.+++|..+|++.
T Consensus 2491 s~eQ~G~~e~AQ~lyeka 2508 (3550)
T KOG0889|consen 2491 SYEQLGFWEEAQSLYEKA 2508 (3550)
T ss_pred HHHHhhhHHHHhhHHHHH
Confidence 344455555555555443
No 462
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.62 E-value=1.2e+02 Score=25.95 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACV 87 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 87 (589)
-..++..+....++-.|.++++.+.+.+..++..|-.-.|..+.
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~ 71 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLL 71 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 34444444444444555555555555544444444333333333
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.41 E-value=1.6e+02 Score=30.99 Aligned_cols=73 Identities=10% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHHhCCChH------HHHHHHHhcC-CCCcchHHHHHHH
Q 048179 81 VALKACVSLMDLKMGEEIWRKAVELG--YGNDVFVGSSMLNLYVKCGKMN------EAMVAFEKMQ-RKDLVCWSSMING 151 (589)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~li~~ 151 (589)
+++.+|...|++..+.++++...... -+.-...+|..|+-+.+.|.++ .|.+.++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67777777777777777777766542 1222345566666666666543 2333333322 2355555555554
Q ss_pred HH
Q 048179 152 LV 153 (589)
Q Consensus 152 ~~ 153 (589)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.20 E-value=55 Score=30.68 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048179 245 TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSAL 285 (589)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 285 (589)
-|+..|..-.+.||.++|+.++++..+.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788999999999999999999999999776666664443
No 465
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.93 E-value=2e+02 Score=23.14 Aligned_cols=40 Identities=3% Similarity=0.014 Sum_probs=33.0
Q ss_pred HHHHHHHHh--ccCCCCchhHHHHHHHHHhCCChHHHHHHHH
Q 048179 465 GEKVAKKVL--KLNPDDLGIHALVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 465 a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 504 (589)
..++|..+. +++-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567777776 4556778889999999999999999999886
No 466
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.30 E-value=3.3e+02 Score=25.60 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCCHH
Q 048179 214 VQTSLVDMYAKTGHLDLASHVFKNMSRI---NIVTWGALISGFAQNGLAGSTLELLMEMQS-----CGFEPDSV 279 (589)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 279 (589)
+.+.....|..+|.+.+|..+.+...+- +...|-.++..+...|+--.+...+.++.+ .|+..+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 3445567888999999999999888764 456788899999999998888888877743 45555543
No 467
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=39.20 E-value=2e+02 Score=28.92 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCCHHHH--HHHHHHHhccCchhhHHHHHH
Q 048179 265 LLMEMQSCGFEPDSVSL--VSALLACAQIGFLKLGKSIHG 302 (589)
Q Consensus 265 ~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~ 302 (589)
+.+.+.+.|..++..++ ++.+.-|+..|.++..+.+..
T Consensus 165 I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 165 IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 33444555556665554 556666777776665554443
No 468
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.07 E-value=2.8e+02 Score=26.22 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHH----------hCCCccHHHHHH
Q 048179 96 EEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLV----------FNGQPREAVDAY 165 (589)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~ 165 (589)
.++++.+.+.++.|.-+.+.-+.-++..+=.+.+.+.+++.+..... -|..|+..|+ -.|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 35666666666666666666666666666666677777766653211 1444444333 246666666665
Q ss_pred HH
Q 048179 166 KR 167 (589)
Q Consensus 166 ~~ 167 (589)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 43
No 469
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.94 E-value=5.3e+02 Score=27.85 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 352 SYGIHGHGEEALSLFLQMIETMVKPDHS--TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 352 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
++..-|+-++|..+.++|.... .|-.. -...+..+|+-.|+.....+++.-..+ ....|+.-+....-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3444566667777777776543 22111 122344566666666666666655554 333444444444444445556
Q ss_pred HHHHHHHHHhcCCCCChh----HHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 430 VEEALKIVDSMSTEPGLA----VWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 430 ~~~A~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
++....+..-+...-|.. +-.+|.-+|+-.|+ .+|+.+++-+..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 665555555443322211 22334445555554 346666666655
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.84 E-value=1.9e+02 Score=23.86 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048179 146 SSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQAC 187 (589)
Q Consensus 146 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 187 (589)
..++..+.+.+..-.|.++++++.+.+...+..|....|..+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 334444444444455555555555544444444443333333
No 471
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.70 E-value=1.7e+02 Score=28.20 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhccCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 463 SIGEKVAKKVLKLNPD---DLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
++...++..+++.-|+ -+.+|.+++.++...|.+++++.+|+++...|..
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 4555566666655553 3567888888888888888888888888776654
No 472
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=38.45 E-value=1e+02 Score=22.46 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=7.8
Q ss_pred hcCCChHHHHHHhcc
Q 048179 21 GGKNDIVSARKLFEE 35 (589)
Q Consensus 21 ~~~g~~~~A~~~~~~ 35 (589)
++.|+++-...+++.
T Consensus 5 ~~~~~~~~~~~ll~~ 19 (89)
T PF12796_consen 5 AQNGNLEILKFLLEK 19 (89)
T ss_dssp HHTTTHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 345555555555553
No 473
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.01 E-value=34 Score=32.51 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=61.8
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCChh-HHHHHHHHHHhcCCchHHHH
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPGLA-VWVALLSGCHNHKKFSIGEK 467 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 467 (589)
..|.++.|++.|...+. .-+|....|..-..++.+.+++..|++-+... ...||.. .|-.-..+.+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34667777777766664 22333555555556666677777776666554 3344432 33333445566677777777
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 468 VAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 468 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.+..+.+++-+ ..+-..+-.+.-+.+..++-...+++.+
T Consensus 204 dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 204 DLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 77777766532 1222333344444444444444444433
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.56 E-value=1.8e+02 Score=24.83 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 048179 145 WSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLG 191 (589)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 191 (589)
-..++..+...++.-.|.++++.+.+.+..++..|....|..+...|
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444444444555566666666666665555555555555544444
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.37 E-value=1.5e+02 Score=24.49 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=18.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC
Q 048179 83 LKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCG 125 (589)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 125 (589)
+..+...++.-.|..+++.+.+.+...+..|--.-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3334444344455555555555444443333323334444444
No 476
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.37 E-value=4.3e+02 Score=25.99 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=26.3
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHH-HcCCHHHHHHHHHhc
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPT--EKHYACMVDLLA-RAGEVEEALKIVDSM 440 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 440 (589)
..+.+.|.+..|.++.+-+.+ +.|+ +.....+|+.|+ ++++++--+++++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 345556666666666666553 2333 333333444443 555555555555543
No 477
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=35.66 E-value=1.1e+02 Score=30.09 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHH
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEV 499 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 499 (589)
|.+.++.+.|..-..+.+-++|.....+..-+.++....+|.+|
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eA 281 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEA 281 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333333333333333
No 478
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=35.19 E-value=4.2e+02 Score=25.60 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHH
Q 048179 318 VIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEG 397 (589)
Q Consensus 318 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a 397 (589)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHH
Q 048179 398 RYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLS 454 (589)
Q Consensus 398 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 454 (589)
...++...................+...-..+.+.+..+++++-..+|...++.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 479
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.07 E-value=58 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 246 WGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
.-.+|.+|...|++++|.+++.++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34467788888888888888777654
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.99 E-value=1.4e+02 Score=27.39 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=7.4
Q ss_pred HhcCCcHHHHHHHHHHH
Q 048179 388 LSHSGLVEEGRYWFDLM 404 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~ 404 (589)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 34444444444444444
No 481
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=34.99 E-value=3.7e+02 Score=24.89 Aligned_cols=154 Identities=9% Similarity=0.057 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCH-----HHHHHHHHHHHHhCCCCChhhHHHHH
Q 048179 44 YNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDL-----KMGEEIWRKAVELGYGNDVFVGSSML 118 (589)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~li 118 (589)
.+.+++.+.+.+....|+.+.+.+... +-=..+...++......... ......+....+. +.. ...|-..+
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~-f~~~l~Iv 160 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQE-FPEYLEIV 160 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHc-CcchHHHH
Confidence 567888888888888888888887543 21222333333322211110 1111122222111 000 11233334
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCC-----ChhhHHHHHHHHHccCC
Q 048179 119 NLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEG-IDA-----DEVVMMGLIQACADLGD 192 (589)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p-----~~~t~~~ll~~~~~~~~ 192 (589)
..|.|.=+...=..+|+....| ..|+.-|.+.|+.+.|-.++--+...+ ... +...-..++......++
T Consensus 161 v~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~ 235 (258)
T PF07064_consen 161 VNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGD 235 (258)
T ss_pred HHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 4444444444444455554322 356666677777777766666554332 111 22333445556666666
Q ss_pred cHHHHHHHHHHHHh
Q 048179 193 SRFGLSVHGYSIRR 206 (589)
Q Consensus 193 ~~~a~~~~~~~~~~ 206 (589)
++.+.++.+.+...
T Consensus 236 w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 236 WDLCFELVRFLKAL 249 (258)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665544
No 482
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.44 E-value=67 Score=21.90 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
-.-.+|.++...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567888888999999888887764
No 483
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.95 E-value=2e+02 Score=21.37 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 048179 324 KCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEA 362 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 362 (589)
..|+.+.|++++..+. +....|..++.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455566666666666 5555666666666555554433
No 484
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.76 E-value=2.5e+02 Score=22.52 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHh
Q 048179 396 EGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDS 439 (589)
Q Consensus 396 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (589)
.+.++|+.|..+ ++--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666666666665 55444 45566666666777777777766653
No 485
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=33.65 E-value=7.2e+02 Score=27.84 Aligned_cols=45 Identities=11% Similarity=0.012 Sum_probs=28.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCH
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEV 430 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 430 (589)
.-....|++..+.+++.++.+..+-.++...|..++..+...|--
T Consensus 1239 ~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1239 KHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 334445677777777777766556666666666666666666544
No 486
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=33.11 E-value=7.1e+02 Score=27.58 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=31.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHH---HHH--HHHHcCCHHHHHHHHHh
Q 048179 383 SLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYAC---MVD--LLARAGEVEEALKIVDS 439 (589)
Q Consensus 383 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~---l~~--~~~~~g~~~~A~~~~~~ 439 (589)
.|.......|+.++|...++++... ...+. ..-|.+ .+. .-...|+.++|.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 4556666778888888777777654 22221 111222 222 23456777777776665
No 487
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.17 E-value=4.5e+02 Score=25.03 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhCC----CCChhhHHHHHHHHHhCCChHHHHHHHHhcCC-CCcchHHHHHHHHHhCCCccHHHHHHH
Q 048179 92 LKMGEEIWRKAVELGY----GNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR-KDLVCWSSMINGLVFNGQPREAVDAYK 166 (589)
Q Consensus 92 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 166 (589)
.+.+.+.|......+. ..++.....++....+.|..+.-..+++.... ++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3445555555544311 22333444444444455554443333333332 233344445555555555444444444
Q ss_pred HHHH
Q 048179 167 RMKK 170 (589)
Q Consensus 167 ~m~~ 170 (589)
....
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 4444
No 488
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.82 E-value=1.3e+02 Score=27.70 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCC--------CCChhHHHHHHHHHHhcCCchHHHHHHHH
Q 048179 417 YACMVDLLARAGEVEEALKIVDSMST--------EPGLAVWVALLSGCHNHKKFSIGEKVAKK 471 (589)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 471 (589)
...|...|.+.|++++|.++|+.+.. .+...+...+..++...|+.+....+.-+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567778888888888888887621 12233444455555566666555554433
No 489
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=7.8e+02 Score=27.58 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 245 TWGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
-|..|+.-|...|..++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888889999999999999988876
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.65 E-value=4.1e+02 Score=25.12 Aligned_cols=23 Identities=4% Similarity=-0.100 Sum_probs=13.6
Q ss_pred CCChhHHHHHHHHHHhcCCchHH
Q 048179 443 EPGLAVWVALLSGCHNHKKFSIG 465 (589)
Q Consensus 443 ~p~~~~~~~l~~~~~~~~~~~~a 465 (589)
.-|+..|..+..||...|+.+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHH
Confidence 34566666666666666654443
No 491
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.55 E-value=2.2e+02 Score=25.02 Aligned_cols=92 Identities=8% Similarity=-0.000 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCch-hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCE
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLG-IHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGE 525 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 525 (589)
...+.++..|...||++.|-++|.-++...+-|.. .|..=+.++.+.+.-....+.++.|...=.....-.....--..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 34667788888888888888888888876554433 34444566666666666557777765421111111011111112
Q ss_pred EEEEEecCCCCCC
Q 048179 526 LHAFIMEDKSHNQ 538 (589)
Q Consensus 526 ~~~f~~~~~~~~~ 538 (589)
.+.|.+|.+.|..
T Consensus 122 ~pvfrsGs~t~tp 134 (199)
T PF04090_consen 122 APVFRSGSRTHTP 134 (199)
T ss_pred cccccCCCcccch
Confidence 4678889888844
No 492
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.93 E-value=8.3e+02 Score=27.71 Aligned_cols=255 Identities=8% Similarity=-0.032 Sum_probs=142.0
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCC
Q 048179 131 MVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNL 210 (589)
Q Consensus 131 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 210 (589)
..+.+.+.++|...-...+..+.+.+. ++++..+...... +|...-...+.++...+........+...++ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 455566667777777777777777665 3455555555432 3443334444444443321111222333332 24
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQ 290 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (589)
|..+-...+..+...+.. ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 666666666666654321 12344555666776666666666666554322 222222 4555555566666666
Q ss_pred cCchhh-HHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHH-HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048179 291 IGFLKL-GKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCAR-ALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQ 368 (589)
Q Consensus 291 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (589)
.+..+. +...+..+. ..++..+-.+.+..+.+.|..+.+. .+...+.+++...-...+.++...+. .++...+..
T Consensus 769 ~~~~~~~~~~~L~~ll--~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 769 LGAGGAPAGDAVRALT--GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred hccccchhHHHHHHHh--cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 654432 222222222 3446777788888888888766553 34444555666666667777777765 456666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 048179 369 MIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVS 406 (589)
Q Consensus 369 m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 406 (589)
+.+ .|+...-...+.++.+...-..+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 664 45666666677777765444566777776665
No 493
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.93 E-value=3.9e+02 Score=23.90 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC
Q 048179 419 CMVDLLARAGEVEEALKIVDSMST 442 (589)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~~ 442 (589)
.+..+..|.|+.++|.+.|.++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Confidence 345555666666666666666533
No 494
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.80 E-value=1.5e+02 Score=22.46 Aligned_cols=29 Identities=21% Similarity=0.144 Sum_probs=19.1
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 477 PDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 477 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
|-.|..+..|+.+|++.|+-|.|.+-|+.
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34456666677777777777777666654
No 495
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=30.68 E-value=5.4e+02 Score=25.41 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=54.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHH--HHHHhcCCCCCHHHHHHHHHH
Q 048179 210 LDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELL--MEMQSCGFEPDSVSLVSALLA 287 (589)
Q Consensus 210 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--~~m~~~g~~p~~~~~~~ll~~ 287 (589)
.+..+...++..|...++|+.--+... ...-+.|+...|+... +-|.-..-.||..|-..++..
T Consensus 50 s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~t 115 (439)
T KOG1498|consen 50 SNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIET 115 (439)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Confidence 345556666677777777655433221 1123556666665422 112222224565565555554
Q ss_pred HhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC
Q 048179 288 CAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQ 339 (589)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 339 (589)
+...-. ++ +|- -.-...+-..|...+-.+|++++|..++.+.+
T Consensus 116 Lr~Vte---gk-Iyv-----EvERarlTk~L~~ike~~Gdi~~Aa~il~el~ 158 (439)
T KOG1498|consen 116 LRTVTE---GK-IYV-----EVERARLTKMLAKIKEEQGDIAEAADILCELQ 158 (439)
T ss_pred HHHhhc---Cc-eEE-----eehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 322110 00 000 00012233567778888999999999888776
No 496
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.17 E-value=3.6e+02 Score=23.24 Aligned_cols=25 Identities=16% Similarity=-0.011 Sum_probs=17.7
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHh
Q 048179 383 SLLSALSHSGLVEEGRYWFDLMVSK 407 (589)
Q Consensus 383 ~ll~a~~~~g~~~~a~~~~~~~~~~ 407 (589)
.-|.-|.+.|+++.+...|..+...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4456667778888888877777654
No 497
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.78 E-value=3e+02 Score=28.90 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=24.4
Q ss_pred HHHcCCHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHH
Q 048179 424 LARAGEVEEALKIVDSMSTE-PGLAVWVALLSGCHNHKKFSIGEKVAK 470 (589)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~ 470 (589)
+..-+..++|-.+|+++..+ || ..+......+.+.|-...|..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 52 LHDVNETERAYALYETLIAQNND-EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhhHhHHHHHHHHHHhCCc-chHHHHHHHHHhhhhhhHHHHHHH
Confidence 44455556666666665432 33 444444455555555555555555
No 498
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.35 E-value=5.1e+02 Score=24.75 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC-CchhHHH-HHHHHH--hCCChHHHHHHHHHHHhC
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPD-DLGIHAL-VSNFFA--MEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~-l~~~~~--~~g~~~~a~~~~~~m~~~ 509 (589)
+..-...-....|++..|-..+-....+-++ +....+. .|..-+ -..+|+-|++-+.++++.
T Consensus 131 ~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 131 TLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444456789999998876655544332 2212222 232222 256899999999998863
No 499
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=29.16 E-value=6e+02 Score=25.52 Aligned_cols=227 Identities=11% Similarity=-0.019 Sum_probs=115.6
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC
Q 048179 47 IIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGK 126 (589)
Q Consensus 47 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 126 (589)
-|.++...| ..+++.+....... ++...+.....++....+......+.+.+ -.++..+......++...+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCc
Confidence 366677777 56777666666432 23344444444444333322222333222 23456677788888887777
Q ss_pred hHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 048179 127 MNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRR 206 (589)
Q Consensus 127 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 206 (589)
.+....+..-+..++.......+.++...+. .+...+....+ .+|...-...+.++...++.+.... +..+.
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~-L~~al-- 187 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSEST-LRLYL-- 187 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHH-HHHHH--
Confidence 7666666666666666665555566554432 23334444333 3455555556666665555433222 22221
Q ss_pred cCCCchHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048179 207 HLNLDVKVQTSLVDMYAKTGHLDLASHVFKN-MSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSAL 285 (589)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 285 (589)
...|..+-..-+.+....|. ..|...+.. ...++....-.+...+... ..+++.+.+....+. ++ +-...+
T Consensus 188 -~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d---~~--vr~~a~ 259 (410)
T TIGR02270 188 -RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLRELLQA---AA--TRREAL 259 (410)
T ss_pred -cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHHHhcC---hh--hHHHHH
Confidence 13456666666666666666 555555444 3344444433333333333 233566655555543 22 344455
Q ss_pred HHHhccCchhhH
Q 048179 286 LACAQIGFLKLG 297 (589)
Q Consensus 286 ~~~~~~~~~~~a 297 (589)
.++...|+....
T Consensus 260 ~AlG~lg~p~av 271 (410)
T TIGR02270 260 RAVGLVGDVEAA 271 (410)
T ss_pred HHHHHcCCcchH
Confidence 555555554443
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.68 E-value=1.6e+02 Score=22.97 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=30.4
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 048179 148 MINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGD 192 (589)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 192 (589)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 455555566667788888888777766677776666666665554
Done!