Query 048179
Match_columns 589
No_of_seqs 677 out of 3779
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 12:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-44 8.4E-49 380.3 36.3 483 18-510 61-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-41 7.8E-46 357.6 27.4 479 8-492 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-27 5.6E-32 237.1 39.4 371 83-495 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-27 1.6E-31 233.9 40.6 352 149-508 6-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.6E-28 8.8E-33 247.0 16.6 212 59-292 8-224 (501)
6 4g26_A Pentatricopeptide repea 100.0 9E-28 3.1E-32 243.0 19.2 197 29-225 9-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.8E-24 6.2E-29 223.6 32.8 438 43-486 8-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.1E-24 1.8E-28 220.2 32.3 427 77-510 7-479 (514)
9 3fp2_A TPR repeat-containing p 99.9 4.9E-23 1.7E-27 214.2 33.6 421 41-509 25-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4E-23 1.4E-27 209.7 32.0 336 141-505 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.9E-26 199.0 35.9 365 108-498 23-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-21 3.6E-26 204.1 29.3 432 10-485 25-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 4.5E-20 1.5E-24 180.9 33.3 326 176-555 2-355 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.3E-19 8E-24 175.8 32.7 312 141-493 2-353 (359)
15 3hym_B Cell division cycle pro 99.9 3.8E-19 1.3E-23 172.2 28.8 285 211-497 21-322 (330)
16 3hym_B Cell division cycle pro 99.8 1.5E-18 5.2E-23 167.9 28.9 264 241-508 20-298 (330)
17 2xm6_A Protein corresponding t 99.8 2.2E-17 7.4E-22 169.1 38.9 351 89-492 56-452 (490)
18 1b89_A Protein (clathrin heavy 99.8 1.9E-18 6.4E-23 166.6 27.4 345 21-440 14-369 (449)
19 2ooe_A Cleavage stimulation fa 99.8 7.6E-17 2.6E-21 166.8 41.4 411 75-510 12-493 (530)
20 1fch_A Peroxisomal targeting s 99.8 1E-18 3.6E-23 172.0 23.2 281 223-506 36-356 (368)
21 1b89_A Protein (clathrin heavy 99.8 9.4E-19 3.2E-23 168.7 22.0 286 123-440 15-308 (449)
22 2xm6_A Protein corresponding t 99.8 1.6E-16 5.3E-21 162.8 39.0 350 110-511 38-434 (490)
23 2ooe_A Cleavage stimulation fa 99.8 1.4E-16 4.9E-21 164.8 36.6 408 38-478 10-495 (530)
24 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.4E-20 162.1 44.6 383 75-502 984-1377(1630)
25 4eqf_A PEX5-related protein; a 99.8 3E-18 1E-22 168.6 21.0 261 242-505 64-352 (365)
26 3mkr_A Coatomer subunit epsilo 99.8 2.8E-17 9.4E-22 155.3 26.6 267 223-503 10-288 (291)
27 4g1t_A Interferon-induced prot 99.8 5.5E-17 1.9E-21 165.5 29.8 252 255-520 187-470 (472)
28 1xi4_A Clathrin heavy chain; a 99.8 6.2E-15 2.1E-19 158.2 45.2 374 12-434 987-1375(1630)
29 3cv0_A Peroxisome targeting si 99.8 1.6E-17 5.3E-22 160.5 21.8 259 245-507 23-313 (327)
30 1fch_A Peroxisomal targeting s 99.8 2.5E-17 8.5E-22 162.1 21.9 271 180-474 67-358 (368)
31 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.7E-22 163.8 18.4 232 277-510 64-311 (365)
32 3mkr_A Coatomer subunit epsilo 99.8 2.1E-16 7.1E-21 149.3 23.8 247 250-510 6-265 (291)
33 4g1t_A Interferon-induced prot 99.7 4.7E-16 1.6E-20 158.6 27.2 381 75-487 50-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 2.3E-15 7.7E-20 145.3 23.7 241 211-477 54-317 (327)
35 2pl2_A Hypothetical conserved 99.7 9.5E-16 3.3E-20 138.2 18.7 195 309-506 2-211 (217)
36 3e4b_A ALGK; tetratricopeptide 99.7 3.3E-14 1.1E-18 143.3 26.7 376 82-508 9-420 (452)
37 3uq3_A Heat shock protein STI1 99.7 1.8E-14 6.2E-19 133.6 22.7 218 245-509 7-236 (258)
38 3uq3_A Heat shock protein STI1 99.6 6.7E-15 2.3E-19 136.6 19.3 239 211-489 4-256 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-16 6.1E-21 164.9 8.7 131 309-440 124-262 (1134)
40 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-16 4.3E-21 166.0 7.5 129 110-238 126-262 (1134)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-14 6.2E-19 135.1 20.8 241 255-503 17-269 (275)
42 3u4t_A TPR repeat-containing p 99.6 1.9E-14 6.6E-19 134.8 20.7 246 214-494 5-269 (272)
43 3e4b_A ALGK; tetratricopeptide 99.6 7.6E-14 2.6E-18 140.6 24.5 344 147-512 8-390 (452)
44 4e6h_A MRNA 3'-END-processing 99.6 1.1E-11 3.7E-16 129.1 38.9 218 261-481 327-576 (679)
45 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.8E-18 127.3 22.0 197 312-510 37-239 (252)
46 2q7f_A YRRB protein; TPR, prot 99.6 4.5E-14 1.5E-18 129.7 18.3 170 316-488 61-235 (243)
47 2q7f_A YRRB protein; TPR, prot 99.6 4.2E-14 1.4E-18 129.9 17.9 197 311-510 22-223 (243)
48 2vq2_A PILW, putative fimbrial 99.6 1.7E-13 5.9E-18 124.1 21.6 198 311-510 7-212 (225)
49 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.7E-18 135.1 21.3 246 244-493 98-366 (382)
50 1ouv_A Conserved hypothetical 99.6 6.1E-13 2.1E-17 124.6 25.8 224 242-511 5-253 (273)
51 3vtx_A MAMA; tetratricopeptide 99.6 2.3E-13 8E-18 119.1 19.9 166 342-510 4-171 (184)
52 2ho1_A Type 4 fimbrial biogene 99.6 6.4E-13 2.2E-17 122.8 23.4 206 243-485 37-248 (252)
53 3u4t_A TPR repeat-containing p 99.6 3.5E-13 1.2E-17 126.1 21.5 228 245-510 5-251 (272)
54 2h6f_A Protein farnesyltransfe 99.6 4.7E-13 1.6E-17 130.6 22.6 226 279-508 98-347 (382)
55 1ouv_A Conserved hypothetical 99.5 2.1E-12 7.1E-17 121.0 25.6 226 211-480 5-256 (273)
56 4a1s_A PINS, partner of inscut 99.5 9.8E-14 3.4E-18 138.6 17.1 264 215-508 51-371 (411)
57 2pl2_A Hypothetical conserved 99.5 3.5E-13 1.2E-17 121.3 18.9 112 357-472 98-211 (217)
58 3sf4_A G-protein-signaling mod 99.5 4E-13 1.4E-17 133.7 21.2 268 211-508 8-335 (406)
59 3sf4_A G-protein-signaling mod 99.5 1.4E-13 4.6E-18 137.1 17.1 292 180-498 12-365 (406)
60 2vq2_A PILW, putative fimbrial 99.5 1.5E-12 5E-17 117.8 22.4 206 244-486 9-222 (225)
61 3ro2_A PINS homolog, G-protein 99.5 3.8E-13 1.3E-17 129.9 19.5 197 313-509 84-332 (338)
62 4abn_A Tetratricopeptide repea 99.5 1.8E-13 6.3E-18 138.7 16.0 204 298-505 88-317 (474)
63 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.9E-13 1.3E-17 126.0 17.0 218 289-510 16-245 (275)
64 4e6h_A MRNA 3'-END-processing 99.5 1.8E-10 6E-15 120.1 35.3 435 56-511 47-572 (679)
65 3vtx_A MAMA; tetratricopeptide 99.5 2.4E-12 8.3E-17 112.5 17.4 168 310-480 3-175 (184)
66 2ond_A Cleavage stimulation fa 99.4 1.9E-11 6.6E-16 116.5 24.0 217 260-480 33-275 (308)
67 4a1s_A PINS, partner of inscut 99.4 1.4E-12 4.7E-17 130.2 15.6 270 178-477 49-374 (411)
68 3ro2_A PINS homolog, G-protein 99.4 2.2E-12 7.5E-17 124.5 16.4 135 344-478 184-335 (338)
69 4i17_A Hypothetical protein; T 99.4 6.9E-12 2.4E-16 113.9 18.2 165 343-509 7-209 (228)
70 4gyw_A UDP-N-acetylglucosamine 99.4 4.3E-12 1.5E-16 133.8 18.9 162 343-508 9-173 (723)
71 3ulq_A Response regulator aspa 99.4 7.4E-12 2.5E-16 123.6 19.4 195 313-508 144-367 (383)
72 3ulq_A Response regulator aspa 99.4 1.7E-11 5.8E-16 121.0 21.7 231 218-477 109-370 (383)
73 2ond_A Cleavage stimulation fa 99.4 2.9E-11 9.9E-16 115.3 22.6 213 295-511 33-272 (308)
74 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.8E-16 108.1 17.5 162 345-509 10-173 (186)
75 3nf1_A KLC 1, kinesin light ch 99.4 2.6E-12 9.1E-17 122.6 14.0 164 345-508 113-306 (311)
76 4abn_A Tetratricopeptide repea 99.4 1.3E-11 4.5E-16 125.0 18.9 179 328-510 84-288 (474)
77 3q15_A PSP28, response regulat 99.3 8.3E-11 2.8E-15 115.8 21.5 195 313-508 142-364 (378)
78 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.6E-14 107.6 29.1 194 315-508 96-321 (373)
79 4i17_A Hypothetical protein; T 99.3 6.2E-11 2.1E-15 107.5 18.8 204 277-491 6-225 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 1.1E-10 3.8E-15 101.7 18.7 167 313-482 9-180 (186)
81 3q15_A PSP28, response regulat 99.3 6.1E-10 2.1E-14 109.5 23.6 226 251-476 109-366 (378)
82 3qky_A Outer membrane assembly 99.2 6.2E-10 2.1E-14 103.2 19.8 205 310-555 13-247 (261)
83 3edt_B KLC 2, kinesin light ch 99.2 2.7E-10 9.3E-15 106.7 15.6 220 289-508 12-280 (283)
84 3nf1_A KLC 1, kinesin light ch 99.2 5.6E-11 1.9E-15 113.3 10.2 52 387-440 253-304 (311)
85 4gyw_A UDP-N-acetylglucosamine 99.2 2.6E-10 9E-15 120.2 15.8 165 309-477 6-176 (723)
86 1qqe_A Vesicular transport pro 99.2 1.6E-09 5.4E-14 102.2 19.8 215 227-486 32-280 (292)
87 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-09 1.1E-13 95.8 20.1 183 312-512 4-216 (225)
88 1hz4_A MALT regulatory protein 99.1 2.5E-08 8.5E-13 97.8 27.6 121 151-271 23-163 (373)
89 1qqe_A Vesicular transport pro 99.1 1.3E-09 4.5E-14 102.8 17.0 228 261-507 3-267 (292)
90 4ga2_A E3 SUMO-protein ligase 99.1 1E-10 3.5E-15 98.1 8.2 141 351-495 5-149 (150)
91 3qky_A Outer membrane assembly 99.1 1.5E-09 5.2E-14 100.6 16.9 203 276-499 13-251 (261)
92 3mv2_B Coatomer subunit epsilo 99.1 6.2E-09 2.1E-13 96.2 20.5 138 220-371 21-164 (310)
93 2pzi_A Probable serine/threoni 99.1 8.3E-10 2.8E-14 117.0 16.7 169 323-495 402-583 (681)
94 2fo7_A Synthetic consensus TPR 99.1 1.4E-09 4.9E-14 88.8 14.7 126 382-509 5-132 (136)
95 3mv2_B Coatomer subunit epsilo 99.1 2.5E-08 8.5E-13 92.2 23.3 240 251-511 21-284 (310)
96 4ga2_A E3 SUMO-protein ligase 99.1 2.8E-10 9.5E-15 95.4 9.4 122 384-508 3-128 (150)
97 3qou_A Protein YBBN; thioredox 99.1 4.2E-09 1.4E-13 99.0 16.8 174 330-507 104-282 (287)
98 2fo7_A Synthetic consensus TPR 99.1 5.4E-09 1.8E-13 85.3 15.3 131 345-478 3-135 (136)
99 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.8E-13 91.2 18.4 172 331-511 5-199 (212)
100 3gyz_A Chaperone protein IPGC; 99.0 1.6E-09 5.4E-14 90.3 11.6 102 409-510 30-134 (151)
101 3edt_B KLC 2, kinesin light ch 99.0 6.8E-09 2.3E-13 97.1 16.5 165 312-476 85-282 (283)
102 4gco_A Protein STI-1; structur 99.0 3.3E-09 1.1E-13 85.7 12.2 95 414-508 13-109 (126)
103 2r5s_A Uncharacterized protein 99.0 2.7E-09 9.1E-14 92.2 11.9 156 349-508 12-172 (176)
104 2vsy_A XCC0866; transferase, g 99.0 5.1E-09 1.7E-13 109.0 16.1 160 325-487 2-169 (568)
105 2vgx_A Chaperone SYCD; alterna 99.0 1.6E-09 5.3E-14 90.5 9.7 97 414-510 21-119 (148)
106 3urz_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 90.9 15.4 158 319-479 11-190 (208)
107 2uy1_A Cleavage stimulation fa 99.0 5.9E-07 2E-11 90.8 29.0 99 54-170 7-117 (493)
108 2pzi_A Probable serine/threoni 98.9 3.5E-08 1.2E-12 104.6 18.7 191 289-483 402-610 (681)
109 4gco_A Protein STI-1; structur 98.9 1.6E-08 5.6E-13 81.5 12.3 114 374-489 8-124 (126)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.2E-08 1.1E-12 88.3 15.5 124 382-510 10-151 (213)
111 2vsy_A XCC0866; transferase, g 98.9 2.2E-08 7.5E-13 104.2 16.3 146 292-440 3-154 (568)
112 3urz_A Uncharacterized protein 98.9 2E-08 6.8E-13 89.3 13.8 160 346-510 7-187 (208)
113 3qou_A Protein YBBN; thioredox 98.9 6.4E-08 2.2E-12 90.8 17.4 134 375-510 114-249 (287)
114 3dra_A Protein farnesyltransfe 98.9 5.6E-07 1.9E-11 84.1 23.2 191 315-508 70-286 (306)
115 2xcb_A PCRH, regulatory protei 98.9 1.8E-08 6.2E-13 83.3 11.8 96 414-509 18-115 (142)
116 3u3w_A Transcriptional activat 98.9 2.9E-07 1E-11 86.7 21.3 160 349-508 81-265 (293)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 7.4E-08 2.5E-12 91.4 16.9 219 256-501 4-253 (307)
118 2r5s_A Uncharacterized protein 98.9 4.8E-08 1.6E-12 84.2 14.2 156 315-474 9-172 (176)
119 3dra_A Protein farnesyltransfe 98.8 1.4E-06 4.7E-11 81.4 24.7 224 260-488 50-301 (306)
120 2yhc_A BAMD, UPF0169 lipoprote 98.8 1E-07 3.6E-12 85.8 16.7 184 278-482 4-220 (225)
121 3upv_A Heat shock protein STI1 98.8 3.2E-08 1.1E-12 79.9 11.7 96 414-509 4-101 (126)
122 2c2l_A CHIP, carboxy terminus 98.8 1.4E-08 4.8E-13 95.0 10.5 192 311-509 3-199 (281)
123 2e2e_A Formate-dependent nitri 98.8 5.2E-08 1.8E-12 84.0 13.4 120 389-510 21-145 (177)
124 1a17_A Serine/threonine protei 98.8 6.8E-08 2.3E-12 82.1 13.9 127 380-508 15-145 (166)
125 2uy1_A Cleavage stimulation fa 98.8 3.1E-06 1.1E-10 85.5 27.9 350 11-371 16-412 (493)
126 2qfc_A PLCR protein; TPR, HTH, 98.8 1.7E-07 5.8E-12 88.3 17.0 164 345-508 77-265 (293)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.8E-07 1.3E-11 81.2 18.2 144 316-479 10-154 (213)
128 1na0_A Designed protein CTPR3; 98.8 1.1E-07 3.6E-12 76.2 13.2 115 378-494 9-125 (125)
129 2vyi_A SGTA protein; chaperone 98.8 7.9E-08 2.7E-12 77.8 12.2 117 378-496 12-130 (131)
130 2lni_A Stress-induced-phosphop 98.8 7.3E-08 2.5E-12 78.3 12.0 116 378-495 16-133 (133)
131 2ifu_A Gamma-SNAP; membrane fu 98.8 6E-08 2E-12 92.1 12.6 196 291-507 4-222 (307)
132 1p5q_A FKBP52, FK506-binding p 98.7 5.9E-08 2E-12 93.3 12.1 94 414-507 196-292 (336)
133 3rjv_A Putative SEL1 repeat pr 98.7 8.2E-07 2.8E-11 79.0 18.3 160 311-477 17-199 (212)
134 1hxi_A PEX5, peroxisome target 98.7 6.5E-08 2.2E-12 77.3 9.4 95 416-510 19-115 (121)
135 2kck_A TPR repeat; tetratricop 98.7 1.3E-07 4.5E-12 74.0 10.6 99 413-511 5-108 (112)
136 4f3v_A ESX-1 secretion system 98.7 1.3E-07 4.3E-12 86.3 11.4 180 324-508 18-236 (282)
137 4f3v_A ESX-1 secretion system 98.7 2.6E-07 8.8E-12 84.3 12.8 136 347-487 106-248 (282)
138 3q49_B STIP1 homology and U bo 98.6 2.9E-07 9.8E-12 75.3 12.1 99 412-510 7-107 (137)
139 2vgx_A Chaperone SYCD; alterna 98.6 1.2E-07 4.1E-12 78.9 9.3 106 378-485 21-128 (148)
140 3sz7_A HSC70 cochaperone (SGT) 98.6 1.9E-07 6.4E-12 79.4 10.7 95 414-508 11-107 (164)
141 3rkv_A Putative peptidylprolyl 98.6 2.8E-07 9.6E-12 78.0 11.5 84 446-555 63-147 (162)
142 3gyz_A Chaperone protein IPGC; 98.6 3E-07 1E-11 76.4 11.3 105 374-480 31-138 (151)
143 2e2e_A Formate-dependent nitri 98.6 2E-07 6.7E-12 80.4 10.7 129 354-485 21-154 (177)
144 2hr2_A Hypothetical protein; a 98.6 4.2E-08 1.5E-12 80.6 6.0 63 447-509 58-131 (159)
145 2lni_A Stress-induced-phosphop 98.6 5.2E-07 1.8E-11 73.1 12.7 97 413-509 15-113 (133)
146 4gcn_A Protein STI-1; structur 98.6 1.8E-07 6.1E-12 75.5 9.4 94 415-508 9-111 (127)
147 1elw_A TPR1-domain of HOP; HOP 98.6 7.2E-07 2.5E-11 70.4 12.9 108 380-489 6-115 (118)
148 2fbn_A 70 kDa peptidylprolyl i 98.6 3.3E-07 1.1E-11 80.6 11.8 95 415-509 89-186 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.6 4.3E-07 1.5E-11 71.7 11.4 98 413-510 3-102 (118)
150 3gw4_A Uncharacterized protein 98.6 4.8E-07 1.7E-11 79.7 12.8 153 355-508 4-175 (203)
151 2qfc_A PLCR protein; TPR, HTH, 98.6 1.6E-06 5.3E-11 81.6 16.8 162 314-475 77-266 (293)
152 3u3w_A Transcriptional activat 98.6 4.4E-06 1.5E-10 78.5 19.6 159 317-475 80-266 (293)
153 3upv_A Heat shock protein STI1 98.6 5.4E-07 1.8E-11 72.5 11.4 112 379-492 5-124 (126)
154 2dba_A Smooth muscle cell asso 98.6 1.2E-06 4E-11 72.6 13.6 95 414-508 28-127 (148)
155 2vyi_A SGTA protein; chaperone 98.6 7.4E-07 2.5E-11 71.9 12.0 97 413-509 11-109 (131)
156 1na0_A Designed protein CTPR3; 98.6 6.7E-07 2.3E-11 71.4 11.6 96 414-509 9-106 (125)
157 2xcb_A PCRH, regulatory protei 98.5 4.8E-07 1.6E-11 74.7 10.6 109 379-489 19-129 (142)
158 3sz7_A HSC70 cochaperone (SGT) 98.5 7.5E-07 2.6E-11 75.6 12.0 110 378-489 11-122 (164)
159 2dba_A Smooth muscle cell asso 98.5 1.5E-06 5E-11 72.0 13.5 113 377-492 27-145 (148)
160 2fbn_A 70 kDa peptidylprolyl i 98.5 2.1E-07 7.1E-12 81.9 8.3 95 414-508 38-150 (198)
161 3q7a_A Farnesyltransferase alp 98.5 7.1E-05 2.4E-09 70.6 25.4 172 253-429 64-257 (349)
162 2xev_A YBGF; tetratricopeptide 98.5 7.7E-07 2.6E-11 71.8 10.1 91 418-508 6-104 (129)
163 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 76.7 12.6 154 323-476 3-177 (203)
164 3q49_B STIP1 homology and U bo 98.4 1.2E-06 4.2E-11 71.5 10.7 114 376-491 7-127 (137)
165 1elr_A TPR2A-domain of HOP; HO 98.4 1.9E-06 6.5E-11 69.4 11.6 95 414-508 4-107 (131)
166 1a17_A Serine/threonine protei 98.4 3.8E-06 1.3E-10 71.0 13.9 128 344-474 14-145 (166)
167 3dss_A Geranylgeranyl transfer 98.4 5.1E-05 1.7E-09 71.3 22.5 190 295-488 91-317 (331)
168 1wao_1 Serine/threonine protei 98.4 6.8E-07 2.3E-11 90.2 10.1 119 385-505 13-135 (477)
169 1p5q_A FKBP52, FK506-binding p 98.4 1.9E-06 6.5E-11 82.7 12.7 97 414-510 147-260 (336)
170 3q7a_A Farnesyltransferase alp 98.4 3.1E-05 1E-09 73.1 20.3 213 293-508 69-330 (349)
171 3k9i_A BH0479 protein; putativ 98.4 2.7E-07 9.2E-12 73.2 5.3 82 427-508 3-89 (117)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.6E-06 8.8E-11 85.6 13.7 95 414-508 317-414 (457)
173 3dss_A Geranylgeranyl transfer 98.4 5.8E-05 2E-09 70.9 21.7 178 328-508 90-303 (331)
174 2kck_A TPR repeat; tetratricop 98.4 4E-06 1.4E-10 65.3 11.3 101 378-480 6-111 (112)
175 2c2l_A CHIP, carboxy terminus 98.4 3.2E-06 1.1E-10 78.9 12.3 105 377-483 3-109 (281)
176 4gcn_A Protein STI-1; structur 98.3 2.5E-06 8.6E-11 68.6 9.9 97 380-478 10-115 (127)
177 3ro3_A PINS homolog, G-protein 98.3 4E-06 1.4E-10 70.4 11.4 128 381-508 12-157 (164)
178 2if4_A ATFKBP42; FKBP-like, al 98.3 1E-06 3.5E-11 84.6 8.5 148 343-510 179-329 (338)
179 4b4t_Q 26S proteasome regulato 98.3 7.9E-06 2.7E-10 81.6 15.1 189 320-508 12-244 (434)
180 1elr_A TPR2A-domain of HOP; HO 98.3 2.2E-06 7.5E-11 69.0 8.8 110 380-492 6-124 (131)
181 1hxi_A PEX5, peroxisome target 98.3 3.3E-06 1.1E-10 67.2 9.5 98 381-480 20-119 (121)
182 2xev_A YBGF; tetratricopeptide 98.3 9.4E-06 3.2E-10 65.2 12.2 107 383-491 7-121 (129)
183 3rkv_A Putative peptidylprolyl 98.3 2.3E-06 7.9E-11 72.3 8.7 79 414-492 63-144 (162)
184 1wao_1 Serine/threonine protei 98.3 4.4E-06 1.5E-10 84.2 12.0 115 353-470 16-134 (477)
185 1ihg_A Cyclophilin 40; ppiase 98.3 4.6E-06 1.6E-10 80.9 11.5 89 414-502 273-363 (370)
186 3ma5_A Tetratricopeptide repea 98.2 5E-06 1.7E-10 63.5 8.6 66 444-509 5-70 (100)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 6.8E-06 2.3E-10 82.5 11.9 65 446-510 317-381 (457)
188 1ihg_A Cyclophilin 40; ppiase 98.2 8.8E-06 3E-10 79.0 12.2 112 379-509 224-336 (370)
189 2hr2_A Hypothetical protein; a 98.2 2.4E-06 8.2E-11 70.2 6.6 74 416-489 59-145 (159)
190 3k9i_A BH0479 protein; putativ 98.2 1.7E-06 5.8E-11 68.5 5.3 94 391-485 3-100 (117)
191 1dce_A Protein (RAB geranylger 98.2 5.5E-05 1.9E-09 77.7 17.4 170 326-498 43-244 (567)
192 1zu2_A Mitochondrial import re 98.1 2.1E-06 7.2E-11 70.4 4.8 86 426-511 14-122 (158)
193 2l6j_A TPR repeat-containing p 98.1 4.1E-06 1.4E-10 65.3 6.4 93 413-505 3-103 (111)
194 4b4t_Q 26S proteasome regulato 98.1 0.00035 1.2E-08 69.5 21.8 162 246-407 58-245 (434)
195 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6E-10 66.3 10.2 133 345-477 11-160 (164)
196 3n71_A Histone lysine methyltr 98.1 2.9E-05 9.9E-10 77.8 12.9 125 387-511 318-466 (490)
197 1na3_A Designed protein CTPR2; 98.1 2E-05 6.9E-10 58.6 9.1 81 414-494 9-91 (91)
198 2kat_A Uncharacterized protein 98.0 2.3E-05 7.9E-10 61.5 9.2 78 432-509 3-82 (115)
199 2if4_A ATFKBP42; FKBP-like, al 98.0 2E-05 6.8E-10 75.6 10.4 152 312-480 179-333 (338)
200 3bee_A Putative YFRE protein; 98.0 3.7E-05 1.3E-09 57.4 9.4 69 444-512 4-75 (93)
201 2l6j_A TPR repeat-containing p 98.0 2.6E-05 8.9E-10 60.6 8.3 66 445-510 3-68 (111)
202 1klx_A Cysteine rich protein B 97.9 0.00012 4.2E-09 59.5 11.5 111 393-511 10-128 (138)
203 3lvg_A Clathrin heavy chain 1; 97.9 6.6E-06 2.3E-10 78.7 3.9 238 8-264 52-325 (624)
204 3n71_A Histone lysine methyltr 97.9 2.2E-05 7.5E-10 78.6 7.8 115 422-554 317-449 (490)
205 1dce_A Protein (RAB geranylger 97.8 0.00025 8.6E-09 72.8 15.4 152 356-511 42-223 (567)
206 1na3_A Designed protein CTPR2; 97.8 0.00014 4.8E-09 53.8 9.8 65 445-509 8-72 (91)
207 3qwp_A SET and MYND domain-con 97.8 3.5E-05 1.2E-09 76.0 7.7 116 421-554 294-427 (429)
208 1zu2_A Mitochondrial import re 97.8 3.3E-05 1.1E-09 63.3 5.6 92 393-486 17-131 (158)
209 1klx_A Cysteine rich protein B 97.7 0.00038 1.3E-08 56.5 11.9 113 356-477 8-128 (138)
210 2kat_A Uncharacterized protein 97.7 9.9E-05 3.4E-09 57.8 7.3 81 396-478 3-85 (115)
211 3qww_A SET and MYND domain-con 97.6 4.4E-05 1.5E-09 75.1 5.0 82 427-508 311-410 (433)
212 1pc2_A Mitochondria fission pr 97.5 0.00057 2E-08 55.3 9.9 91 443-559 29-124 (152)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00023 7.8E-09 53.8 6.6 63 421-483 7-72 (99)
214 3ly7_A Transcriptional activat 97.4 0.005 1.7E-07 58.0 15.3 64 445-509 276-339 (372)
215 2kc7_A BFR218_protein; tetratr 97.3 0.001 3.6E-08 50.0 8.5 53 386-440 8-61 (99)
216 3ma5_A Tetratricopeptide repea 97.3 0.0015 5.1E-08 49.4 8.8 63 343-406 7-69 (100)
217 3ly7_A Transcriptional activat 97.2 0.0023 7.8E-08 60.3 11.6 152 329-484 181-347 (372)
218 3qww_A SET and MYND domain-con 97.2 0.0023 7.9E-08 62.9 11.6 95 390-484 310-425 (433)
219 3lvg_A Clathrin heavy chain 1; 97.1 2.6E-05 9E-10 74.7 -3.4 238 110-364 53-325 (624)
220 3u64_A Protein TP_0956; tetrat 97.0 0.002 6.9E-08 58.1 8.5 87 430-516 179-276 (301)
221 3qwp_A SET and MYND domain-con 97.0 0.0065 2.2E-07 59.8 12.6 101 385-485 294-415 (429)
222 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0059 2E-07 46.5 9.3 75 413-487 4-87 (104)
223 1nzn_A CGI-135 protein, fissio 96.8 0.0092 3.2E-07 46.3 9.4 65 444-508 33-102 (126)
224 1pc2_A Mitochondria fission pr 96.6 0.0096 3.3E-07 48.1 8.5 75 412-486 30-111 (152)
225 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.4E-06 55.5 18.8 102 321-440 661-762 (814)
226 3bee_A Putative YFRE protein; 96.4 0.026 8.8E-07 41.7 9.2 69 411-479 3-76 (93)
227 1wy6_A Hypothetical protein ST 96.3 0.26 8.7E-06 38.4 16.1 141 354-513 18-158 (172)
228 1y8m_A FIS1; mitochondria, unk 96.3 0.11 3.7E-06 41.1 12.4 90 443-558 36-129 (144)
229 1qsa_A Protein (soluble lytic 96.2 1.1 3.8E-05 45.9 23.3 114 357-474 228-347 (618)
230 3mkq_A Coatomer beta'-subunit; 96.0 0.045 1.5E-06 59.1 12.6 154 322-504 609-773 (814)
231 3mkq_B Coatomer subunit alpha; 95.9 0.27 9.3E-06 40.8 14.0 129 320-472 13-141 (177)
232 2v5f_A Prolyl 4-hydroxylase su 95.9 0.029 1E-06 42.5 7.5 65 445-509 4-75 (104)
233 4h7y_A Dual specificity protei 95.6 0.15 5.1E-06 40.6 10.5 53 460-512 74-126 (161)
234 4gns_B Protein CSD3, chitin bi 95.6 0.051 1.7E-06 56.7 10.3 54 454-507 345-398 (754)
235 3o48_A Mitochondria fission 1 95.4 0.099 3.4E-06 40.7 8.9 65 444-508 38-106 (134)
236 3mkq_B Coatomer subunit alpha; 95.4 0.79 2.7E-05 38.0 14.7 129 119-269 13-141 (177)
237 1nzn_A CGI-135 protein, fissio 95.2 0.24 8.3E-06 38.4 10.6 75 412-486 33-114 (126)
238 4ady_A RPN2, 26S proteasome re 94.5 6.2 0.00021 42.2 28.3 90 12-104 147-258 (963)
239 3u64_A Protein TP_0956; tetrat 94.4 0.062 2.1E-06 48.5 6.0 104 394-506 179-295 (301)
240 2wpv_A GET4, UPF0363 protein Y 91.9 7.6 0.00026 35.7 17.3 113 113-236 35-158 (312)
241 1wy6_A Hypothetical protein ST 91.8 3.7 0.00013 32.0 16.2 139 254-410 18-156 (172)
242 4b4t_P 26S proteasome regulato 91.3 10 0.00034 37.2 17.4 50 55-104 30-84 (445)
243 3ffl_A Anaphase-promoting comp 90.5 1.3 4.5E-05 36.0 8.3 113 380-506 22-148 (167)
244 2p58_C Putative type III secre 90.4 3.5 0.00012 30.0 9.3 87 192-283 22-108 (116)
245 2uwj_G Type III export protein 89.9 3.2 0.00011 30.1 8.8 87 192-283 21-107 (115)
246 3lpz_A GET4 (YOR164C homolog); 89.8 12 0.00042 34.6 19.7 111 115-236 39-160 (336)
247 4ady_A RPN2, 26S proteasome re 89.8 24 0.00082 37.9 28.5 254 252-508 383-657 (963)
248 3txn_A 26S proteasome regulato 89.8 14 0.00049 35.2 16.8 57 349-405 105-166 (394)
249 3ffl_A Anaphase-promoting comp 89.7 2.5 8.4E-05 34.5 9.3 55 351-405 28-90 (167)
250 4h7y_A Dual specificity protei 89.5 7 0.00024 31.2 11.6 56 156-212 74-129 (161)
251 2ff4_A Probable regulatory pro 89.2 0.93 3.2E-05 43.7 7.8 67 449-515 174-245 (388)
252 2qx5_A Nucleoporin NIC96; mRNA 88.8 23 0.0008 36.4 18.1 82 248-339 299-383 (661)
253 1v54_E Cytochrome C oxidase po 87.5 3.1 0.00011 30.4 7.5 63 358-422 25-87 (109)
254 3o48_A Mitochondria fission 1 87.4 6.8 0.00023 30.5 10.0 74 412-485 38-117 (134)
255 3lpz_A GET4 (YOR164C homolog); 86.5 20 0.00069 33.1 21.6 167 315-508 38-215 (336)
256 4gns_B Protein CSD3, chitin bi 86.1 7.4 0.00025 40.7 12.7 53 387-441 346-398 (754)
257 2wpv_A GET4, UPF0363 protein Y 85.6 22 0.00074 32.6 21.8 168 214-407 35-217 (312)
258 1y8m_A FIS1; mitochondria, unk 85.5 12 0.0004 29.6 12.0 74 412-485 37-116 (144)
259 4fhn_B Nucleoporin NUP120; pro 85.5 36 0.0012 38.0 18.9 142 283-431 817-988 (1139)
260 2ff4_A Probable regulatory pro 85.5 6.1 0.00021 37.9 11.2 71 346-417 174-248 (388)
261 1v54_E Cytochrome C oxidase po 84.3 5.9 0.0002 29.0 7.6 61 259-319 26-86 (109)
262 4b4t_P 26S proteasome regulato 83.5 35 0.0012 33.3 21.3 159 346-504 140-319 (445)
263 1zbp_A Hypothetical protein VP 82.4 8.2 0.00028 34.3 9.5 50 355-405 9-58 (273)
264 2y69_E Cytochrome C oxidase su 82.0 6.6 0.00022 30.5 7.5 62 359-422 69-130 (152)
265 4fhn_B Nucleoporin NUP120; pro 81.0 14 0.00047 41.4 13.2 60 449-508 902-966 (1139)
266 2uwj_G Type III export protein 79.8 15 0.00052 26.7 8.7 61 319-382 46-106 (115)
267 2p58_C Putative type III secre 79.0 16 0.00056 26.6 9.1 61 319-382 47-107 (116)
268 1zbp_A Hypothetical protein VP 77.6 3.2 0.00011 36.9 5.3 59 422-480 5-65 (273)
269 3esl_A Checkpoint serine/threo 76.1 34 0.0012 28.8 13.2 90 448-563 82-173 (202)
270 2y69_E Cytochrome C oxidase su 75.3 15 0.00051 28.6 7.6 59 261-319 71-129 (152)
271 1wdy_A 2-5A-dependent ribonucl 73.7 48 0.0016 29.3 17.1 208 14-236 6-240 (285)
272 4a1g_A Mitotic checkpoint seri 72.9 35 0.0012 27.3 9.9 49 465-513 84-134 (152)
273 4b4t_R RPN7, 26S proteasome re 71.8 19 0.00063 35.1 9.8 59 381-440 134-194 (429)
274 3txn_A 26S proteasome regulato 71.7 71 0.0024 30.4 21.0 27 214-240 21-47 (394)
275 3mv2_A Coatomer subunit alpha; 70.1 33 0.0011 31.4 10.1 60 437-510 196-257 (325)
276 4b4t_R RPN7, 26S proteasome re 69.6 15 0.00053 35.6 8.7 96 314-409 133-239 (429)
277 1wdy_A 2-5A-dependent ribonucl 69.0 61 0.0021 28.6 13.9 57 220-277 153-213 (285)
278 2wvi_A Mitotic checkpoint seri 66.7 50 0.0017 26.8 9.6 48 465-512 79-128 (164)
279 3ltj_A Alpharep-4; protein eng 66.0 57 0.002 27.1 18.7 147 115-270 32-178 (201)
280 1k1a_A B-cell lymphoma 3-encod 66.0 61 0.0021 27.8 11.4 82 52-137 17-102 (241)
281 1qsa_A Protein (soluble lytic 65.8 1.2E+02 0.0042 30.9 34.0 332 14-368 76-438 (618)
282 3bqo_A Telomeric repeat-bindin 65.4 26 0.0009 29.2 7.6 72 430-501 94-172 (211)
283 3ltm_A Alpha-REP4; protein eng 65.2 61 0.0021 27.2 18.0 61 210-271 124-184 (211)
284 3hra_A Ankyrin repeat family p 64.8 59 0.002 26.9 11.4 151 19-177 11-173 (201)
285 3eiq_C Programmed cell death p 61.2 89 0.003 29.2 11.6 242 146-407 58-321 (358)
286 3ltj_A Alpharep-4; protein eng 55.3 89 0.003 25.9 20.5 79 211-293 27-105 (201)
287 3jxi_A Vanilloid receptor-rela 53.4 40 0.0014 29.5 7.9 52 51-102 12-72 (260)
288 3eu9_A Huntingtin-interacting 52.9 96 0.0033 26.3 10.3 109 20-137 16-132 (240)
289 3ltm_A Alpha-REP4; protein eng 52.5 1E+02 0.0035 25.8 20.3 60 311-371 125-184 (211)
290 3kea_A K1L; tropism, ANK repea 51.1 76 0.0026 28.4 9.5 199 24-237 10-217 (285)
291 1k1a_A B-cell lymphoma 3-encod 50.2 1.2E+02 0.004 25.8 11.2 83 83-166 13-100 (241)
292 3eu9_A Huntingtin-interacting 48.6 1.2E+02 0.0042 25.6 10.7 78 51-136 16-98 (240)
293 2d2s_A Exocyst complex compone 47.1 57 0.0019 28.4 7.4 86 47-135 24-115 (235)
294 3twe_A Alpha4H; unknown functi 45.8 27 0.00091 17.3 2.8 17 539-555 3-19 (27)
295 2rfa_A Transient receptor pote 45.8 1.4E+02 0.0047 25.3 10.6 151 16-173 6-182 (232)
296 3bu8_A Telomeric repeat-bindin 44.2 25 0.00085 29.8 4.2 39 455-493 123-161 (235)
297 2nsz_A Programmed cell death p 43.7 1.1E+02 0.0037 23.6 7.9 61 115-175 11-76 (129)
298 4b4t_S RPN3, 26S proteasome re 43.2 62 0.0021 32.0 7.6 62 378-441 231-297 (523)
299 4b4t_S RPN3, 26S proteasome re 42.9 75 0.0026 31.4 8.1 65 415-479 232-303 (523)
300 2zu6_B Programmed cell death p 42.5 1.7E+02 0.0059 26.6 10.1 63 316-378 170-237 (307)
301 3d9h_A CDNA FLJ77766, highly s 39.3 1.4E+02 0.0048 26.5 9.3 119 10-138 12-149 (285)
302 1ya0_A SMG-7 transcript varian 38.9 87 0.003 30.9 8.1 47 456-502 162-208 (497)
303 2d2s_A Exocyst complex compone 38.2 1.2E+02 0.004 26.4 8.0 22 149-170 25-46 (235)
304 2ion_A PDCD4, programmed cell 36.6 95 0.0032 24.8 6.6 61 115-175 13-78 (152)
305 2fe3_A Peroxide operon regulat 35.3 1.2E+02 0.0041 23.8 7.1 37 149-185 28-64 (145)
306 2nsz_A Programmed cell death p 35.1 1.5E+02 0.0052 22.7 7.7 61 316-376 11-76 (129)
307 3kae_A CDC27, possible protein 34.6 1.9E+02 0.0065 23.7 14.5 82 322-405 43-141 (242)
308 3jxi_A Vanilloid receptor-rela 34.6 1.2E+02 0.0042 26.2 8.0 113 18-135 10-161 (260)
309 2f8y_A Notch homolog 1, transl 34.4 2E+02 0.0069 23.9 10.6 26 13-38 25-50 (223)
310 3aji_A 26S proteasome non-ATPa 33.4 2.1E+02 0.0073 23.9 11.9 112 16-136 9-128 (231)
311 1n11_A Ankyrin; clathrin, BAND 32.7 3.3E+02 0.011 25.8 11.4 22 16-37 17-38 (437)
312 3kae_A CDC27, possible protein 31.8 2.1E+02 0.0072 23.4 10.6 81 424-507 43-141 (242)
313 4gq2_M Nucleoporin NUP120; bet 31.6 3.6E+02 0.012 29.3 12.2 51 384-440 816-866 (950)
314 1wgl_A TOLL-interacting protei 31.5 47 0.0016 21.5 3.2 24 491-514 34-57 (59)
315 4aez_C MAD3, mitotic spindle c 31.5 2.4E+02 0.008 24.2 8.4 50 463-512 131-182 (223)
316 3kea_A K1L; tropism, ANK repea 31.5 2.2E+02 0.0074 25.3 9.2 14 122-135 70-83 (285)
317 3ygs_P Procaspase 9; apoptosis 31.3 40 0.0014 24.5 3.2 35 56-94 52-86 (97)
318 3aji_A 26S proteasome non-ATPa 30.9 2.2E+02 0.0075 23.9 8.9 19 48-66 10-28 (231)
319 2ion_A PDCD4, programmed cell 30.2 1.3E+02 0.0043 24.1 6.3 61 316-376 13-78 (152)
320 2xig_A Ferric uptake regulatio 30.2 1.6E+02 0.0056 23.2 7.1 39 148-186 32-70 (150)
321 3esl_A Checkpoint serine/threo 30.1 2.5E+02 0.0085 23.6 10.3 66 345-412 82-148 (202)
322 3ygs_P Procaspase 9; apoptosis 29.6 86 0.0029 22.7 4.8 38 326-363 51-88 (97)
323 2fe3_A Peroxide operon regulat 29.1 1.1E+02 0.0036 24.1 5.8 34 92-125 37-70 (145)
324 1bd8_A P19INK4D CDK4/6 inhibit 29.0 1.7E+02 0.0058 22.6 7.3 10 226-235 112-121 (156)
325 4ets_A Ferric uptake regulatio 28.7 1.4E+02 0.0047 24.1 6.4 58 169-227 25-84 (162)
326 3b7b_A Euchromatic histone-lys 28.6 2.2E+02 0.0075 24.0 8.5 15 122-136 85-99 (237)
327 3bu8_A Telomeric repeat-bindin 28.3 2.6E+02 0.0089 23.8 7.8 50 394-443 88-143 (235)
328 3hra_A Ankyrin repeat family p 28.0 2.4E+02 0.0083 22.9 9.4 148 51-211 12-172 (201)
329 1n11_A Ankyrin; clathrin, BAND 27.2 4E+02 0.014 25.2 14.5 327 51-414 21-372 (437)
330 3i5p_A Nucleoporin NUP170; hel 26.9 4.7E+02 0.016 25.9 11.6 68 442-509 174-246 (525)
331 4gq2_M Nucleoporin NUP120; bet 26.5 4.8E+02 0.016 28.3 12.0 52 16-68 816-867 (950)
332 2cfu_A SDSA1; SDS-hydrolase, l 26.4 1.1E+02 0.0037 31.6 6.7 64 430-496 436-499 (658)
333 4g8k_A 2-5A-dependent ribonucl 26.0 3.7E+02 0.013 24.3 10.5 247 14-280 26-303 (337)
334 3ph0_C ASCG; type III secretio 25.5 54 0.0019 20.8 2.5 11 456-466 50-60 (61)
335 1oyz_A Hypothetical protein YI 25.4 3.4E+02 0.012 23.7 24.0 18 240-257 65-82 (280)
336 4ets_A Ferric uptake regulatio 23.8 1.1E+02 0.0038 24.7 5.0 69 58-127 14-85 (162)
337 2ko4_A Mediator of RNA polymer 23.6 1.5E+02 0.0053 20.3 4.6 36 31-66 24-61 (81)
338 3ljn_A Hypothetical protein; a 23.3 1.9E+02 0.0066 26.6 7.5 17 221-237 179-195 (364)
339 2xig_A Ferric uptake regulatio 23.1 2.2E+02 0.0077 22.4 6.7 59 369-429 18-76 (150)
340 2wvi_A Mitotic checkpoint seri 22.7 3E+02 0.01 22.2 8.3 51 362-413 79-130 (164)
341 2crb_A Nuclear receptor bindin 22.3 1.1E+02 0.0037 21.9 3.8 26 482-507 17-42 (97)
342 4g8k_A 2-5A-dependent ribonucl 22.1 4.3E+02 0.015 23.8 12.1 39 367-413 290-328 (337)
343 1mzb_A Ferric uptake regulatio 22.1 1.9E+02 0.0065 22.3 6.0 27 45-71 21-48 (136)
344 2o03_A Probable zinc uptake re 22.1 1.7E+02 0.006 22.3 5.7 46 147-192 15-60 (131)
345 1mzb_A Ferric uptake regulatio 21.9 2.7E+02 0.0094 21.3 7.2 23 158-180 34-56 (136)
346 2rfa_A Transient receptor pote 21.8 3.2E+02 0.011 22.8 8.2 148 48-208 7-182 (232)
347 3d9h_A CDNA FLJ77766, highly s 21.6 4.1E+02 0.014 23.3 9.7 116 14-138 60-181 (285)
348 4aez_C MAD3, mitotic spindle c 21.5 3.9E+02 0.013 22.9 8.3 52 360-412 131-183 (223)
349 3ljn_A Hypothetical protein; a 21.4 2.3E+02 0.008 26.0 7.7 209 13-237 20-266 (364)
350 3eyy_A Putative iron uptake re 21.1 1.9E+02 0.0065 22.7 5.8 23 158-180 33-55 (145)
351 3mwm_A ZUR, putative metal upt 21.0 1.6E+02 0.0053 22.9 5.3 45 147-191 18-62 (139)
352 2o03_A Probable zinc uptake re 20.5 1.5E+02 0.0051 22.7 5.0 44 46-89 15-58 (131)
353 2pnn_A Transient receptor pote 20.4 1.7E+02 0.0058 25.6 6.2 185 14-202 14-255 (273)
354 2b7e_A PRE-mRNA processing pro 20.3 1.1E+02 0.0036 19.9 3.2 30 57-86 2-31 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-44 Score=380.27 Aligned_cols=483 Identities=10% Similarity=-0.020 Sum_probs=404.3
Q ss_pred HhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHH
Q 048179 18 ALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEE 97 (589)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 97 (589)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 34566788888999999998889999999999999999999999999999854 5788999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCC-------------------CcchHHHHHHHHHhCCCc
Q 048179 98 IWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRK-------------------DLVCWSSMINGLVFNGQP 158 (589)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~ 158 (589)
+|+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987654 678999999999999999999999999965433 378999999999999999
Q ss_pred cHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCcHH--HHHH-HHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048179 159 REAVDAYKRMKKEGIDAD-EVVMMGLIQACADLGDSRF--GLSV-HGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHV 234 (589)
Q Consensus 159 ~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 234 (589)
++|+++|++|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+..+...+++.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998864 44 3344444433332222211 1111 44444445555666788889999999999999999
Q ss_pred HhhcCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCCh
Q 048179 235 FKNMSR--INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNL 312 (589)
Q Consensus 235 ~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 312 (589)
|+++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.+.|..+++.+....+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH
Confidence 999988 789999999999999999999999999999875 44778899999999999999999999999997778889
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALS 389 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~ 389 (589)
.+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 9999999999999999999999998753 567899999999999999999999999999874 457889999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-------CCCCC--hhHHHHHHHHHHhcC
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-------STEPG--LAVWVALLSGCHNHK 460 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~ 460 (589)
+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ ...|+ ..+|..++.+|...|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999874 3456889999999999999999999999987 33676 679999999999999
Q ss_pred CchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 461 KFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 461 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
++++|++.++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-41 Score=357.56 Aligned_cols=479 Identities=8% Similarity=-0.028 Sum_probs=412.6
Q ss_pred CCcchHhHHHHhhhcCCChHHHHHHhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHH
Q 048179 8 AYGNSVGRIIALYGGKNDIVSARKLFEELP--LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKA 85 (589)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 85 (589)
+++..++.++..|.+.|++++|..+|+++. .|+..+|+.++.+|.+.|++++|+.+|+.+... +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 577889999999999999999999999885 567789999999999999999999999998653 6788999999999
Q ss_pred HhccCCHHHHHHHHHHHHHh---------------CCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCC---CcchHHH
Q 048179 86 CVSLMDLKMGEEIWRKAVEL---------------GYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRK---DLVCWSS 147 (589)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 147 (589)
+.+.|++++|.++|+++... |.+.+..+++.++.+|.+.|++++|.++|+++.+. +...|..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999853211 12335789999999999999999999999999753 3445555
Q ss_pred HHHHHHhCCCccHHHH--H-HHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 048179 148 MINGLVFNGQPREAVD--A-YKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAK 224 (589)
Q Consensus 148 li~~~~~~g~~~~A~~--~-~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (589)
+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++++.+.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 5554444333222211 1 455555555556667777788899999999999999998876 5789999999999999
Q ss_pred cCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 048179 225 TGHLDLASHVFKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIH 301 (589)
Q Consensus 225 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 301 (589)
.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..+...+.+.|+++.|..++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999863 477899999999999999999999999998653 557888999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048179 302 GYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH 378 (589)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 378 (589)
+.+....+.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999976777899999999999999999999999998753 478899999999999999999999999999874 4578
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHH
Q 048179 379 STFASLLSALSHSGLVEEGRYWFDLMVSKY---KIQPT--EKHYACMVDLLARAGEVEEALKIVDSMST-EP-GLAVWVA 451 (589)
Q Consensus 379 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ 451 (589)
.+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.. .| +..+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 899999999999999999999999997642 44676 78999999999999999999999999732 34 7889999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 048179 452 LLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM 492 (589)
Q Consensus 452 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 492 (589)
++.+|...|++++|.+.++++++++|+++..+..++++|..
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-27 Score=237.14 Aligned_cols=371 Identities=15% Similarity=0.105 Sum_probs=276.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCcc
Q 048179 83 LKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPR 159 (589)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 159 (589)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445667788888888888877764 33455666677777778888888877776553 35567777778888888888
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048179 160 EAVDAYKRMKKEGIDAD-EVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNM 238 (589)
Q Consensus 160 ~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 238 (589)
+|++.|+++.+. .|+ ..++..+..++...|++++|...+..+++.. +.+..++..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888877764 333 3456667777777777777777777766654 223445556666666666666666666655
Q ss_pred CC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHH
Q 048179 239 SR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLG 315 (589)
Q Consensus 239 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 315 (589)
.+ .+..+|..+...+...|++++|+..|+++.+. .+.+...+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------------------------------~p~~~~~~ 206 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----------------------------------DPNFLDAY 206 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------CCCcHHHH
Confidence 43 23455666666666666666666666666553 23344455
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSG 392 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g 392 (589)
..+...+...|++++|...|++... .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 6677777777888888888776643 356788888899999999999999999998864 334678888999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHH
Q 048179 393 LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAK 470 (589)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 470 (589)
++++|...|+.+.+. .+++...+..++.++.+.|++++|.+.++++.. .| +..++..+..++...|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999874 356688899999999999999999999999743 34 57789999999999999999999999
Q ss_pred HHhccCCCCchhHHHHHHHHHhCCC
Q 048179 471 KVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 471 ~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
++++++|+++.+|..++.++...|+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999988774
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.6e-27 Score=233.90 Aligned_cols=352 Identities=13% Similarity=0.082 Sum_probs=292.6
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 048179 149 INGLVFNGQPREAVDAYKRMKKEGIDAD-EVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGH 227 (589)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (589)
...+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+...++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556777888888888777665 333 3445555566677788888888887777654 4467788888888888888
Q ss_pred HHHHHHHHhhcCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCchhhHHHHHHH
Q 048179 228 LDLASHVFKNMSR--I-NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD-SVSLVSALLACAQIGFLKLGKSIHGY 303 (589)
Q Consensus 228 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 303 (589)
+++|...|+++.+ | +..+|..+..++.+.|++++|+..|.++.+. .|+ ...+..+...+...|+++.|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888887753 3 3456888888888889999999888888875 344 34556667777888899999988888
Q ss_pred HhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048179 304 TVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHST 380 (589)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 380 (589)
+....+.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+..+
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 8866777888899999999999999999999998864 356788999999999999999999999998864 335778
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHh
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHN 458 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~ 458 (589)
+..+..++...|++++|...|+.+.+. .+.+...|..++.++.+.|++++|.+.++++.. +++..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 899999999999999999999999863 334578899999999999999999999999732 4577899999999999
Q ss_pred cCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 459 HKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 459 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.|++++|+..+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.6e-28 Score=247.01 Aligned_cols=212 Identities=11% Similarity=0.053 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHCCCCCCc-ccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhc
Q 048179 59 EVLGLYNQMIKEDVRPDS-STFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKM 137 (589)
Q Consensus 59 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 137 (589)
.+..+.+.+.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566777777766554 357888999999999999999999999999999999999999999887764432
Q ss_pred CCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHH
Q 048179 138 QRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTS 217 (589)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (589)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23455678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048179 218 LVDMYAKTGHLDLASHVFKNMSR----INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIG 292 (589)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 292 (589)
+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+...+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999864 7899999999999999999999999999999999999999999999887643
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9e-28 Score=243.01 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=174.6
Q ss_pred HHHHhccCCCCC-----cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC---------HHH
Q 048179 29 ARKLFEELPLRG-----VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMD---------LKM 94 (589)
Q Consensus 29 A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~ 94 (589)
+..+++.+.+.. ...++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 444555554332 235889999999999999999999999999999999999999999987654 788
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHH
Q 048179 95 GEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQ----RKDLVCWSSMINGLVFNGQPREAVDAYKRMKK 170 (589)
Q Consensus 95 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 170 (589)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997 47999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 048179 171 EGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKT 225 (589)
Q Consensus 171 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (589)
.|+.||..||+++|.+|++.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-24 Score=223.59 Aligned_cols=438 Identities=11% Similarity=-0.011 Sum_probs=252.8
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 048179 43 TYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYV 122 (589)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 122 (589)
.|......+.+.|++++|+..|+++.+.+ ||..++..+..++...|+++.|...++.+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45566677777888888888888877764 577777777778888888888888888877765 345567777777788
Q ss_pred hCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHH
Q 048179 123 KCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSV 199 (589)
Q Consensus 123 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 199 (589)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 88888888877776643 233333334433333222222222222222111111111111100000000000000011
Q ss_pred HHHHHHhcC---------CCchHHHHHHHHHHHh---cCCHHHHHHHHhhcCC-----C------------CeehHHHHH
Q 048179 200 HGYSIRRHL---------NLDVKVQTSLVDMYAK---TGHLDLASHVFKNMSR-----I------------NIVTWGALI 250 (589)
Q Consensus 200 ~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~------------~~~~~~~li 250 (589)
...+..... +.+...+..+...+.. .|++++|...|+++.+ . +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000000000 1123334444444443 6677777776665533 1 234566667
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHH
Q 048179 251 SGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSC 330 (589)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (589)
..+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+....+.+..++..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 77777777777777777777653 3356666666667777777777777777665555566666777777777777777
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048179 331 ARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSK 407 (589)
Q Consensus 331 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 407 (589)
|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777766532 345566666677777777777777777766642 234456666666777777777777777766543
Q ss_pred cCCCCC----hhhHHHHHHHHHH---cCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 408 YKIQPT----EKHYACMVDLLAR---AGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 408 ~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
..-.++ ...+..+...+.+ .|++++|.+.++++. ..| +..+|..+...+...|++++|...++++++++|+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 211122 2266666777777 777777777776652 122 4556666666777777777777777777777776
Q ss_pred CchhHHHH
Q 048179 479 DLGIHALV 486 (589)
Q Consensus 479 ~~~~~~~l 486 (589)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66665554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.1e-24 Score=220.21 Aligned_cols=427 Identities=10% Similarity=-0.046 Sum_probs=320.6
Q ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHH
Q 048179 77 STFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR--K-DLVCWSSMINGLV 153 (589)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 153 (589)
..+......+.+.|++++|...|+.+++.. |+...+..+..+|.+.|++++|...|+++.+ | +..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345666778889999999999999999985 6889999999999999999999999998764 3 5678999999999
Q ss_pred hCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHH---HHHHHhcCCHHH
Q 048179 154 FNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSL---VDMYAKTGHLDL 230 (589)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~ 230 (589)
..|++++|+..|+++...+. ++......++..+........+.+.+..+...+..|+......- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 44445445554444333222222222222111111111000000 000111111222
Q ss_pred HHHHHhhcCC---------C-CeehHHHHHHHHHh---CCChhHHHHHHHHHHh-----cCCC--------CCHHHHHHH
Q 048179 231 ASHVFKNMSR---------I-NIVTWGALISGFAQ---NGLAGSTLELLMEMQS-----CGFE--------PDSVSLVSA 284 (589)
Q Consensus 231 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~l 284 (589)
+...+..... + +...+......+.. .|++++|+..|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2222222211 1 13344445555554 8999999999999987 3112 234567778
Q ss_pred HHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHH
Q 048179 285 LLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEE 361 (589)
Q Consensus 285 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 361 (589)
...+...|+++.|...++.+....+. ..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 88899999999999999999844444 88899999999999999999999998764 466789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 362 ALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 362 A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++.
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999864 335678888999999999999999999999874 33457788999999999999999999999873
Q ss_pred C----CCC----hhHHHHHHHHHHh---cCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 442 T----EPG----LAVWVALLSGCHN---HKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 442 ~----~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
. .++ ..+|..+...+.. .|++++|...++++++.+|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2 222 3389999999999 9999999999999999999999999999999999999999999999998743
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.9e-23 Score=214.18 Aligned_cols=421 Identities=13% Similarity=0.067 Sum_probs=253.7
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 048179 41 VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNL 120 (589)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 120 (589)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++++++.. +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999999875 3477888889999999999999999999999886 4467788889999
Q ss_pred HHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHC------CCCCChhhHHHHHHHHHccCCcH
Q 048179 121 YVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKE------GIDADEVVMMGLIQACADLGDSR 194 (589)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~ 194 (589)
+...|++++|...|+.+. .+....+..+..+...+....|+..++++... ...|+...+. .+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChH
Confidence 999999999999997443 22223333344555556667888888887543 1222222222 222222222
Q ss_pred HHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhc--------CCHHHHHHHHhhcCCCCe----------ehHHHHHHHHHh
Q 048179 195 FGLSVHGYSIRRHLNLD-VKVQTSLVDMYAKT--------GHLDLASHVFKNMSRINI----------VTWGALISGFAQ 255 (589)
Q Consensus 195 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~ 255 (589)
.+...+..... ..+. ......+...+... |++++|..+|+++.+.++ .+|..+...+..
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 22111111000 0010 11222222222211 244455555544433111 123333444444
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHH
Q 048179 256 NGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALF 335 (589)
Q Consensus 256 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 335 (589)
.|++++|+..|++..+. .|+ ...+..+...|...|++++|...|
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPT----------------------------------PNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCC----------------------------------HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCC----------------------------------chHHHHHHHHHHHhcCHHHHHHHH
Confidence 55555555555554443 233 444455555555556666666666
Q ss_pred HhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 048179 336 DQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP 412 (589)
Q Consensus 336 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 412 (589)
+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+. .+.
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~ 376 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT 376 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 55432 344566666666667777777777777766653 223456666667777777777777777777653 233
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CC----ChhHHHHHHHHHHhc----------CCchHHHHHHHHHhc
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMST----EP----GLAVWVALLSGCHNH----------KKFSIGEKVAKKVLK 474 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~ 474 (589)
+...+..+...+.+.|++++|.+.++++.. .+ ....+..+...+... |++++|+..++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 355666777777777777777777766521 11 112233444556666 888888888888888
Q ss_pred cCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 475 LNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
.+|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888877763
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4e-23 Score=209.73 Aligned_cols=336 Identities=14% Similarity=0.131 Sum_probs=237.3
Q ss_pred CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 048179 141 DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVD 220 (589)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 220 (589)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44567777777777777777777777776642 2355666666677777777777777777776654 224556666666
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCe------ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCch
Q 048179 221 MYAKTGHLDLASHVFKNMSRINI------VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFL 294 (589)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 294 (589)
+|.+.|++++|...|+++.+.++ ..|..++..+... .+......+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 66666666666666666554222 3444443321000 011112234445555
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 295 KLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
+.|...+..+....+.+..++..++.+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|+++.+
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555544455666677777888888888888888877653 4667888888888888888888888888886
Q ss_pred cCCCCCHHHHHHH------------HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHH
Q 048179 372 TMVKPDHSTFASL------------LSALSHSGLVEEGRYWFDLMVSKYKIQPT-----EKHYACMVDLLARAGEVEEAL 434 (589)
Q Consensus 372 ~~~~p~~~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~ 434 (589)
.. +.+...+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..++..++.++.+.|++++|+
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 53 2233334333 78899999999999999999864 344 457889999999999999999
Q ss_pred HHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHH------------HHHhCC-----C
Q 048179 435 KIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSN------------FFAMEQ-----K 495 (589)
Q Consensus 435 ~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~ 495 (589)
+.++++. ..| +..+|..++.+|...|++++|...++++++++|+++.++..++. .|...| +
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 9999973 234 67899999999999999999999999999999999999999994 455556 5
Q ss_pred hHHHHHHHHH
Q 048179 496 WEEVAGVRKT 505 (589)
Q Consensus 496 ~~~a~~~~~~ 505 (589)
.+++.+.+++
T Consensus 396 ~~~~~~~y~~ 405 (450)
T 2y4t_A 396 KQEIIKAYRK 405 (450)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666777765
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.1e-21 Score=199.00 Aligned_cols=365 Identities=10% Similarity=-0.010 Sum_probs=253.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHH
Q 048179 108 GNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLI 184 (589)
Q Consensus 108 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 184 (589)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...+...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45677899999999999999999999998864 467889999999999999999999999998874 33577888999
Q ss_pred HHHHccCCcHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhH
Q 048179 185 QACADLGDSRFGLSVHGYSIRRHLNLDV---KVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGS 261 (589)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (589)
..+...|++++|...++.+.+... .+. ..+..++..+...+ +..+...+...|++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHH
Confidence 999999999999999999987652 234 56666655422211 1222334444555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-
Q 048179 262 TLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS- 340 (589)
Q Consensus 262 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 340 (589)
|+..|+++.+.. +.+...+..+..++...|+++.|...+..+....+.+..++..++.+|...|++++|...|+++..
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555432 234445555555555555555555555555544445566666666777777777777777766542
Q ss_pred -C-ChhHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcCCcHHHHHHHH
Q 048179 341 -R-DLISWNVI------------IASYGIHGHGEEALSLFLQMIETMVKPD-----HSTFASLLSALSHSGLVEEGRYWF 401 (589)
Q Consensus 341 -~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~ 401 (589)
| +...+..+ ...+...|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|...+
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 33334333 777888899999999998888753 44 336777788888889999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCC-hhHHHHHHHH------------HHhcC-----Cc
Q 048179 402 DLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPG-LAVWVALLSG------------CHNHK-----KF 462 (589)
Q Consensus 402 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----~~ 462 (589)
+.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ..++..+..+ |...| +.
T Consensus 319 ~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 319 SEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 888763 2345788888889999999999999988886 34454 4455555532 33334 66
Q ss_pred hHHHHHHHH-HhccCCCCch----------hHHHHHHHHHhCCChHH
Q 048179 463 SIGEKVAKK-VLKLNPDDLG----------IHALVSNFFAMEQKWEE 498 (589)
Q Consensus 463 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 498 (589)
+++.+.+++ +++..|++.. .+..++.+|...|+.+.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 788888887 7778876532 34445555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.1e-21 Score=204.09 Aligned_cols=432 Identities=10% Similarity=0.000 Sum_probs=308.5
Q ss_pred cchHhHHHHhhhcCCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048179 10 GNSVGRIIALYGGKNDIVSARKLFEELP---LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKAC 86 (589)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 86 (589)
...+..+...|.+.|++++|...|+++. +.+..+|..+..+|...|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3566778888999999999999999864 4567889999999999999999999999999875 34677888899999
Q ss_pred hccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCC------CcchHHHHHHHHHhCCCccH
Q 048179 87 VSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRK------DLVCWSSMINGLVFNGQPRE 160 (589)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 160 (589)
...|++++|...++ .... .|+ .....+..+...+....|...++.+... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 3332 222 2223344555666778899999988652 22334455566666667666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHH-HHHc--------cCCcHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHhc
Q 048179 161 AVDAYKRMKKEGIDADEVVMMGLIQ-ACAD--------LGDSRFGLSVHGYSIRRHLNLD------VKVQTSLVDMYAKT 225 (589)
Q Consensus 161 A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 225 (589)
++..+..... ..+....+...+. .+.. .++++.|..+++.+++...... ..++..+...+...
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 6555444322 1222222222222 2221 2478889999998887653321 23567777888999
Q ss_pred CCHHHHHHHHhhcCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 048179 226 GHLDLASHVFKNMSR--INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGY 303 (589)
Q Consensus 226 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 303 (589)
|++++|...|++..+ |+...|..+...+...|++++|+..|+++.+.. |+
T Consensus 257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-------------------------- 308 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PE-------------------------- 308 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TT--------------------------
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CC--------------------------
Confidence 999999999998864 556778888889999999999999999988753 32
Q ss_pred HhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048179 304 TVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHST 380 (589)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 380 (589)
+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+...
T Consensus 309 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 309 -------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 233345566667777777777777776643 345678888888888899999999998888764 445667
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHc----------CCHHHHHHHHHhcCC-C-C
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMVDLLARA----------GEVEEALKIVDSMST-E-P 444 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~-~-p 444 (589)
+..+...+...|++++|...|+.+.+...-.++ ...+..+..++.+. |++++|...++++.. . .
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 888888889999999999999988764211121 12234456777777 999999999998732 3 4
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
+..+|..+...+...|++++|.+.+++++++.|+++.....
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 57788999999999999999999999999999987766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=4.5e-20 Score=180.88 Aligned_cols=326 Identities=12% Similarity=0.040 Sum_probs=242.8
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHH
Q 048179 176 DEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISG 252 (589)
Q Consensus 176 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 252 (589)
|...+..+...+...|+++.|...+..+++.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566777788888899999999998888765 33677888888888888999999888887754 355678888888
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCC---CH-HHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCH
Q 048179 253 FAQNGLAGSTLELLMEMQSCGFEP---DS-VSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVP 328 (589)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~g~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 328 (589)
+...|++++|+..|++..+. .| +. ..+..+.... . ...+..+...+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~---------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E---------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H---------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H---------------HHHHHHHHHHHHHccCH
Confidence 88889999999888888875 44 22 2222221110 0 11123345677788888
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048179 329 SCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 329 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 405 (589)
++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888887653 456778888888888888888888888888753 4456778888888888888888888888887
Q ss_pred HhcCCCCChhhHH------------HHHHHHHHcCCHHHHHHHHHhcCC-CCCh-----hHHHHHHHHHHhcCCchHHHH
Q 048179 406 SKYKIQPTEKHYA------------CMVDLLARAGEVEEALKIVDSMST-EPGL-----AVWVALLSGCHNHKKFSIGEK 467 (589)
Q Consensus 406 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~p~~-----~~~~~l~~~~~~~~~~~~a~~ 467 (589)
+.. +.+...+. .+...+.+.|++++|.+.++++.. .|+. ..+..+..++...|++++|..
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 642 22233322 236678899999999999988632 3442 235557788999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHH
Q 048179 468 VAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLK 547 (589)
Q Consensus 468 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 547 (589)
.++++++.+|+++..+..++.+|...|++++|.+.++++.+. .|...++...+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l~ 347 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHHH
Confidence 999999999999999999999999999999999999998863 345556666666
Q ss_pred HHHHHHHh
Q 048179 548 KLYLEMRA 555 (589)
Q Consensus 548 ~l~~~~~~ 555 (589)
.+...+++
T Consensus 348 ~~~~~~~~ 355 (359)
T 3ieg_A 348 KAQRLLKQ 355 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666653
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.3e-19 Score=175.76 Aligned_cols=312 Identities=14% Similarity=0.109 Sum_probs=239.2
Q ss_pred CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 048179 141 DLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVD 220 (589)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 220 (589)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567888899999999999999999998863 3357788889999999999999999999999875 336788999999
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCe------ehHHHH------------HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH
Q 048179 221 MYAKTGHLDLASHVFKNMSRINI------VTWGAL------------ISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLV 282 (589)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 282 (589)
.|...|++++|...|+++.+.++ ..+..+ ...+...|++++|+..|+++.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------- 149 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---------- 149 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence 99999999999999999876433 233333 34455555555555555555543
Q ss_pred HHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCH
Q 048179 283 SALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHG 359 (589)
Q Consensus 283 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 359 (589)
.+.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++
T Consensus 150 -------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 150 -------------------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred -------------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 334445556667777777777777777776653 3556777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-h----hhHHHHHH
Q 048179 360 EEALSLFLQMIETMVKPDHSTFA------------SLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-E----KHYACMVD 422 (589)
Q Consensus 360 ~~A~~~~~~m~~~~~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~ 422 (589)
++|...|++..+.. +.+...+. .+...+...|++++|...++.+.+.. |+ . ..+..+..
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 88888888877653 22222222 23566888999999999999988752 33 2 33556888
Q ss_pred HHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 423 LLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
++...|++++|.+.+++... .| +..+|..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999999999999998732 34 6778999999999999999999999999999999999998888876554
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.8e-19 Score=172.17 Aligned_cols=285 Identities=12% Similarity=0.023 Sum_probs=206.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLA 287 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 287 (589)
+..++..++..+...|++++|.++|+++.+ .+...+..++..+...|++++|...+.++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 444555556666666666666666666543 233455556666666667777777776666542 2344555556666
Q ss_pred HhccC-chhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHH
Q 048179 288 CAQIG-FLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEAL 363 (589)
Q Consensus 288 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 363 (589)
+...| +.+.|...+..+....+.+...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 66666 666666666666655555667777888888888888888888887653 34567777888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHHcCCHHHHHHH
Q 048179 364 SLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYK-------IQPTEKHYACMVDLLARAGEVEEALKI 436 (589)
Q Consensus 364 ~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 436 (589)
..+++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+..+|.+.|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9998888763 44567788888888899999999999988876421 133466888899999999999999999
Q ss_pred HHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH-hCCChH
Q 048179 437 VDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA-MEQKWE 497 (589)
Q Consensus 437 ~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 497 (589)
+++... +.+..+|..+...+...|++++|...++++++++|+++..+..++.++. ..|+.+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 988632 3356788888889999999999999999999999999999999998884 555543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-18 Score=167.89 Aligned_cols=264 Identities=13% Similarity=0.036 Sum_probs=231.9
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHH
Q 048179 241 INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVID 320 (589)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 320 (589)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|+.+.|...+..+....+.+..++..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 466778888999999999999999999998864 3445566677888899999999999999999777888999999999
Q ss_pred HhHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 048179 321 MYSKCG-VPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEE 396 (589)
Q Consensus 321 ~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~ 396 (589)
.|...| ++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 99999999998764 456789999999999999999999999999874 3345677778999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-----------CCChhHHHHHHHHHHhcCCchHH
Q 048179 397 GRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-----------EPGLAVWVALLSGCHNHKKFSIG 465 (589)
Q Consensus 397 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~p~~~~~~~l~~~~~~~~~~~~a 465 (589)
|...++.+.+. .+.+...+..+...+.+.|++++|...++++.. +.+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999863 344578899999999999999999999988621 23456899999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 466 EKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+..+++++++.|+++..+..++.+|...|++++|.+.++++.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998765
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2.2e-17 Score=169.14 Aligned_cols=351 Identities=12% Similarity=0.036 Sum_probs=214.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh----CCChHHHHHHHHhcCCC-CcchHHHHHHHHHh----CCCcc
Q 048179 89 LMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVK----CGKMNEAMVAFEKMQRK-DLVCWSSMINGLVF----NGQPR 159 (589)
Q Consensus 89 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~ 159 (589)
.++++.|...+++..+.| +...+..|...|.. .++.++|...|++..+. +...+..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 445555555555554442 33344444444444 44555555555444322 33344444444444 44455
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh----cCCHHHH
Q 048179 160 EAVDAYKRMKKEGIDADEVVMMGLIQACAD----LGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAK----TGHLDLA 231 (589)
Q Consensus 160 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 231 (589)
+|++.|++..+.| +...+..+...+.. .++++.|...++...+.| +...+..|..+|.. .++.++|
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 5555555544432 23333333333333 344444444444444432 33344444444444 4444444
Q ss_pred HHHHhhcCC-CCeehHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhh
Q 048179 232 SHVFKNMSR-INIVTWGALISGFAQ----NGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVR 306 (589)
Q Consensus 232 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 306 (589)
.+.|++..+ .+..++..+...|.. .+++++|+.+|++..+.|
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------------------------------- 253 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--------------------------------- 253 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------------------------
Confidence 444443322 222333333333333 344444444444444322
Q ss_pred cCCCChhHHHHHHHHhHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCC
Q 048179 307 RFDFNLVLGTSVIDMYSK----CGVPSCARALFDQMQS-RDLISWNVIIASYGIH-----GHGEEALSLFLQMIETMVKP 376 (589)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p 376 (589)
+...+..+..+|.. .++.++|...|++..+ .+..++..+...|... +++++|+..|++..+.|
T Consensus 254 ----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--- 326 (490)
T 2xm6_A 254 ----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--- 326 (490)
T ss_dssp ----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---
T ss_pred ----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---
Confidence 23344555666666 7888888888887765 4566777787888777 89999999999998875
Q ss_pred CHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHhcCCCCChhHH
Q 048179 377 DHSTFASLLSALSHSG---LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR----AGEVEEALKIVDSMSTEPGLAVW 449 (589)
Q Consensus 377 ~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~ 449 (589)
+...+..+...+...| ++++|.++|+...+. .+...+..|..+|.. .+++++|.++|++.....+...+
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 3456666777776656 889999999998874 467788889999998 89999999999998655678888
Q ss_pred HHHHHHHHh----cCCchHHHHHHHHHhccCCC---CchhHHHHHHHHHh
Q 048179 450 VALLSGCHN----HKKFSIGEKVAKKVLKLNPD---DLGIHALVSNFFAM 492 (589)
Q Consensus 450 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 492 (589)
..|...|.. .+|+++|...++++.+.+|+ ++.+...++.++..
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 899998887 89999999999999999854 77777778777664
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1.9e-18 Score=166.59 Aligned_cols=345 Identities=11% Similarity=0.069 Sum_probs=146.7
Q ss_pred hcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHH
Q 048179 21 GGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWR 100 (589)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 100 (589)
.+.|++++|...+++++.|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37789999999999997664 999999999999999999999965 3588899999999999999999999888
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhH
Q 048179 101 KAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVM 180 (589)
Q Consensus 101 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 180 (589)
..++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87775 4567889999999999999999988875 477789999999999999999999999976 368
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChh
Q 048179 181 MGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAG 260 (589)
Q Consensus 181 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (589)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888776 267888888888888888888877776654 34444446777888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh--cCCHHHHHHHHHhc
Q 048179 261 STLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK--CGVPSCARALFDQM 338 (589)
Q Consensus 261 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 338 (589)
+|+.+++...... +-....| +-|.-+|++ -+++.+..+.|..-
T Consensus 225 Eai~lLe~aL~le-~ah~~~f----------------------------------tel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMF----------------------------------TELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHH----------------------------------HHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCc-HHHHHHH----------------------------------HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888776543 2233333 333333333 33444455555433
Q ss_pred CC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 048179 339 QS--------RDLISWNVIIASYGIHGHGEEALSLFLQMIET-MVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYK 409 (589)
Q Consensus 339 ~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 409 (589)
.. .+...|..+.-.|...++++.|..+ |.+. ...-+...|.-++.--....-+-+|..++- ..
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-- 341 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-- 341 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH--
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc--
Confidence 22 2456789999999999999988764 3332 112223344433322222222333333332 11
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 410 IQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 410 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
.+...+-|..++...=+...+.++|++.
T Consensus 342 ---~p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 342 ---KPLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp ---CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 1223555555555555555555555554
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=7.6e-17 Score=166.84 Aligned_cols=411 Identities=9% Similarity=0.010 Sum_probs=268.1
Q ss_pred CcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC--CCcchHHHHHHHH
Q 048179 75 DSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR--KDLVCWSSMINGL 152 (589)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 152 (589)
|...|..++.. .+.|+++.|+.+++++++. .+.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55567777763 5677788888888887765 244566777777777777888888888877764 5555666655422
Q ss_pred -HhCCCccHHHH----HHHHHHHC-CCCCC-hhhHHHHHHHHHc---------cCCcHHHHHHHHHHHHhcCCCchHHHH
Q 048179 153 -VFNGQPREAVD----AYKRMKKE-GIDAD-EVVMMGLIQACAD---------LGDSRFGLSVHGYSIRRHLNLDVKVQT 216 (589)
Q Consensus 153 -~~~g~~~~A~~----~~~~m~~~-~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (589)
...|+.+.|.+ +|++.... |..|+ ...|...+..... .|+++.|..+++..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34566666554 55554432 44433 3344444443332 455666666666655521111112222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHH------HhcC---CCCCH--------H
Q 048179 217 SLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEM------QSCG---FEPDS--------V 279 (589)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~g---~~p~~--------~ 279 (589)
.........|. ..+..++. .+.+++++|..++.+. .+.. ++|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 22211100110 00111110 0234456666655542 2211 23331 2
Q ss_pred HHHHHHHHHhc----cCch----hhHHHHHHHHhhcCCCChhHHHHHHHHhHh-------cCCHH-------HHHHHHHh
Q 048179 280 SLVSALLACAQ----IGFL----KLGKSIHGYTVRRFDFNLVLGTSVIDMYSK-------CGVPS-------CARALFDQ 337 (589)
Q Consensus 280 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~ 337 (589)
.|...+..... .++. ..+..+++.+....+.++.+|..++..+.+ .|+++ +|..+|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 33333322211 1222 356677888886677888999999888876 68887 89999998
Q ss_pred cCC---C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Q 048179 338 MQS---R-DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-H-STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQ 411 (589)
Q Consensus 338 ~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 411 (589)
..+ | +...|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|+.+.+. +
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~ 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---A 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---c
Confidence 764 3 5678999999999999999999999999984 554 2 47888888888899999999999999853 3
Q ss_pred CC-hhhHHHHHHH-HHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCch----hH
Q 048179 412 PT-EKHYACMVDL-LARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLG----IH 483 (589)
Q Consensus 412 p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~ 483 (589)
|+ ...|...+.. +...|+.++|..+|++.. ..| +...|..++..+...|+.++|..+++++++..|.++. .|
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 33 3334333322 346899999999999863 234 5788999999999999999999999999998776655 78
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 484 ALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 484 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
...+......|+.+.+.++.+++.+.-
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888889999999999999987643
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1e-18 Score=172.00 Aligned_cols=281 Identities=11% Similarity=-0.057 Sum_probs=223.2
Q ss_pred HhcCCHHHHHH-HHhhcCC-----C--CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCch
Q 048179 223 AKTGHLDLASH-VFKNMSR-----I--NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFL 294 (589)
Q Consensus 223 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 294 (589)
...|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888887 7776543 1 35668888888999999999999999988764 44667788888888899999
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-ChhHHHH---------------HHHHHHhc
Q 048179 295 KLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-DLISWNV---------------IIASYGIH 356 (589)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~ 356 (589)
+.|...+..+....+.+..++..+...|...|++++|...|+++.. | +...+.. .+..+...
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 9999999988866677888889999999999999999999988753 2 2222211 23334488
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 048179 357 GHGEEALSLFLQMIETMVKP-DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALK 435 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 435 (589)
|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+.+. .+.+...+..++.++.+.|++++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999864221 4788999999999999999999999999874 23457889999999999999999999
Q ss_pred HHHhcC-CC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-----------chhHHHHHHHHHhCCChHHHHHH
Q 048179 436 IVDSMS-TE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD-----------LGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 436 ~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
.++++. .. .+..+|..+..++...|++++|...+++++++.|++ +.+|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999873 23 457789999999999999999999999999998887 78999999999999999999998
Q ss_pred HHHH
Q 048179 503 RKTM 506 (589)
Q Consensus 503 ~~~m 506 (589)
+++.
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 8643
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=9.4e-19 Score=168.65 Aligned_cols=286 Identities=15% Similarity=0.103 Sum_probs=113.6
Q ss_pred hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHH
Q 048179 123 KCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGY 202 (589)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 202 (589)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677777777777544 37777777777777777777777542 4666777777777777777777776666
Q ss_pred HHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH
Q 048179 203 SIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLV 282 (589)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 282 (589)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6553 34466677777777777777777766653 56667777777777777777777777765 2567
Q ss_pred HHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 048179 283 SALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEA 362 (589)
Q Consensus 283 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 362 (589)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|..+...+. .++.-...++..|.+.|++++|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHH
Confidence 7777777777777777777666 266777777777777777777766666544 3333344577778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHHcCCHHHHH
Q 048179 363 LSLFLQMIETMVKPDHSTFASLLSALS--HSGLVEEGRYWFDLMVSKYKIQP------TEKHYACMVDLLARAGEVEEAL 434 (589)
Q Consensus 363 ~~~~~~m~~~~~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 434 (589)
+.+++...... +--...|+.+..+++ +.+++.+.++.|. ++-+++| +...|.-++..|...++++.|.
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 88887766433 222334444444444 3344444444444 2225555 4667888888888888888877
Q ss_pred HHHHhc
Q 048179 435 KIVDSM 440 (589)
Q Consensus 435 ~~~~~~ 440 (589)
..+-+-
T Consensus 303 ~tm~~h 308 (449)
T 1b89_A 303 ITMMNH 308 (449)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 655443
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.6e-16 Score=162.78 Aligned_cols=350 Identities=13% Similarity=0.051 Sum_probs=242.9
Q ss_pred ChhhHHHHHHHHHh----CCChHHHHHHHHhcCC-CCcchHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCChhhH
Q 048179 110 DVFVGSSMLNLYVK----CGKMNEAMVAFEKMQR-KDLVCWSSMINGLVF----NGQPREAVDAYKRMKKEGIDADEVVM 180 (589)
Q Consensus 110 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~ 180 (589)
+...+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555556666655 5667777766665543 345556666666665 666666666666665543 33444
Q ss_pred HHHHHHHHc----cCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCeehHHHHHH
Q 048179 181 MGLIQACAD----LGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAK----TGHLDLASHVFKNMSR-INIVTWGALIS 251 (589)
Q Consensus 181 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 251 (589)
..+...+.. .+++++|...++...+.| ++..+..|..+|.. .+++++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444544 455556666655555543 34444445555544 4455555555544332 23334444444
Q ss_pred HHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh---
Q 048179 252 GFAQ----NGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK--- 324 (589)
Q Consensus 252 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 324 (589)
.|.. .+++++|+..|++..+.| ++..+..+..+|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~-------------------------------------~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG-------------------------------------DELGQLHLADMYYFGIG 234 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHTSS
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC-------------------------------------CHHHHHHHHHHHHcCCC
Confidence 4444 444444544444444332 33445666677775
Q ss_pred -cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----Cc
Q 048179 325 -CGVPSCARALFDQMQS-RDLISWNVIIASYGI----HGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHS-----GL 393 (589)
Q Consensus 325 -~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~-----g~ 393 (589)
.+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.| +...+..+...+... ++
T Consensus 235 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 7899999999998765 566777778888877 899999999999998765 455666777777776 89
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCchHHH
Q 048179 394 VEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAG---EVEEALKIVDSMSTEPGLAVWVALLSGCHN----HKKFSIGE 466 (589)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 466 (589)
+++|...|+...+. .+...+..+..+|.+.| ++++|.++|++.....+...+..|...|.. .+++++|.
T Consensus 312 ~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 312 REQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999999999874 35667888889998877 889999999998655788899999999988 89999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 048179 467 KVAKKVLKLNPDDLGIHALVSNFFAM----EQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 467 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 511 (589)
..++++.+.+ ++.++..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 388 ~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 388 IWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999998864 68899999999999 8999999999999998764
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.4e-16 Score=164.76 Aligned_cols=408 Identities=12% Similarity=0.083 Sum_probs=290.5
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHH
Q 048179 38 LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSM 117 (589)
Q Consensus 38 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 117 (589)
+.|...|..++. +.+.|++++|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|+++++.. |++..|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346779999998 478999999999999999863 4466678899999999999999999999998874 577777777
Q ss_pred HHHH-HhCCChHHHHH----HHHhcC-----C-CCcchHHHHHHHHHh---------CCCccHHHHHHHHHHHCCCCCCh
Q 048179 118 LNLY-VKCGKMNEAMV----AFEKMQ-----R-KDLVCWSSMINGLVF---------NGQPREAVDAYKRMKKEGIDADE 177 (589)
Q Consensus 118 i~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~ 177 (589)
+... ...|+.+.|.+ +|++.. . ++...|...+....+ .|+++.|..+|++..+. |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 7533 45677776655 676553 1 355678888876654 68899999999999873 332
Q ss_pred ---hhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhh-------cC------CC
Q 048179 178 ---VVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKN-------MS------RI 241 (589)
Q Consensus 178 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~ 241 (589)
..|..........+. ..+ ..++. .+.++++.|..++.. +. .|
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222222111101110 001 11111 122344555544443 11 11
Q ss_pred C--------eehHHHHHHHHHhC----CCh----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc-------cCchh---
Q 048179 242 N--------IVTWGALISGFAQN----GLA----GSTLELLMEMQSCGFEPDSVSLVSALLACAQ-------IGFLK--- 295 (589)
Q Consensus 242 ~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~--- 295 (589)
+ ...|...+...... ++. +++..+|++..... +-+...|......+.. .|+.+
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 13455555433322 222 36778898888752 3456667666666654 68876
Q ss_pred ----hHHHHHHHHhh-cCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-Ch-hHHHHHHHHHHhcCCHHHHHHHH
Q 048179 296 ----LGKSIHGYTVR-RFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-DL-ISWNVIIASYGIHGHGEEALSLF 366 (589)
Q Consensus 296 ----~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 366 (589)
.|..+++.+.. ..|.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999999985 5677899999999999999999999999998764 3 32 48999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---
Q 048179 367 LQMIETMVKPDHSTFASLLSA-LSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--- 442 (589)
Q Consensus 367 ~~m~~~~~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 442 (589)
++..+.. +.+...+...... +...|++++|..+|+...+.+ +.+...|..+++.+.+.|+.++|..+|++...
T Consensus 380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 9998753 2233333332222 335899999999999998753 34578899999999999999999999999732
Q ss_pred -CCC--hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 443 -EPG--LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 443 -~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
.|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 222 348888899899999999999999999998884
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=1.9e-15 Score=162.14 Aligned_cols=383 Identities=11% Similarity=0.075 Sum_probs=295.3
Q ss_pred CcccHHHHHHHHhccCCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHH
Q 048179 75 DSSTFTVALKACVSLMDLKMGEEIWRKAVELG--YGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGL 152 (589)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 152 (589)
|+.--...++++...|.+.++.+++++++-.+ +..+....+.|+....+. +..+..+..++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 33344667788889999999999999988432 113445666677776666 4466666666655323 45577888
Q ss_pred HhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHH
Q 048179 153 VFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLAS 232 (589)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (589)
...|++++|..+|++.. -.....+.++. ..+++++|.++.+.+ .++.+|..+..++...|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999952 11222233332 677899988888754 35788999999999999999999
Q ss_pred HHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCCh
Q 048179 233 HVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNL 312 (589)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 312 (589)
+.|.+. .|...|..++.++.+.|++++|++.|...++.. ++....+.++.+|++.++++....+. ..++.
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------~~~n~ 1195 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------NGPNN 1195 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------hCCCH
Confidence 999775 677888899999999999999999999887764 44333445888899998887544432 23355
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSG 392 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g 392 (589)
..+..+.+.|...|++++|..+|..+ ..|..+...|.+.|++++|++.+++. .+..+|..+..+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 56667999999999999999999986 48999999999999999999999875 45688999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHh--cCCchHHHHH
Q 048179 393 LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHN--HKKFSIGEKV 468 (589)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~--~~~~~~a~~~ 468 (589)
++..|......+ ..+++.+..++..|.+.|.+++|+.+++... .+| ....|+-|...+.+ -++..++.+.
T Consensus 1265 Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999998876543 2466778899999999999999999998863 333 34466666666654 4577788888
Q ss_pred HHHHhccCC-----CCchhHHHHHHHHHhCCChHHHHHH
Q 048179 469 AKKVLKLNP-----DDLGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 469 ~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
|..-..+.| .++..|..+..+|.+.|+|+.|...
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 887777777 7888999999999999999999853
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=3e-18 Score=168.56 Aligned_cols=261 Identities=12% Similarity=-0.056 Sum_probs=212.4
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHH
Q 048179 242 NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDM 321 (589)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 321 (589)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+....+.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568888888888899999999988888764 44667788888888888899999888888886667778888999999
Q ss_pred hHhcCCHHHHHHHHHhcCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 048179 322 YSKCGVPSCARALFDQMQSRD-------------LISWNVIIASYGIHGHGEEALSLFLQMIETMVK-PDHSTFASLLSA 387 (589)
Q Consensus 322 ~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~a 387 (589)
|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999998876411 223344578889999999999999999987422 157889999999
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHH
Q 048179 388 LSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIG 465 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a 465 (589)
+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|++.++++. ..| +..+|..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999874 34458899999999999999999999999873 244 577899999999999999999
Q ss_pred HHHHHHHhccCCC------------CchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 466 EKVAKKVLKLNPD------------DLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 466 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
...+++++++.|+ +...|..++.++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998876 367899999999999999999887764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=2.8e-17 Score=155.32 Aligned_cols=267 Identities=12% Similarity=0.012 Sum_probs=188.2
Q ss_pred HhcCCHHHHHHHHhhcCCCCe----ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHH
Q 048179 223 AKTGHLDLASHVFKNMSRINI----VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGK 298 (589)
Q Consensus 223 ~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 298 (589)
...|+++.|+..++.....++ .....+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555555443221 1223344555555555555544432 1 2344445555555555555555555
Q ss_pred HHHHHHh-hc-CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048179 299 SIHGYTV-RR-FDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP 376 (589)
Q Consensus 299 ~~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 376 (589)
..++.+. .+ .|.+...+..+...|...|++++|.+.|++ ..+...+..++..+.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 5555554 22 244556667778889999999999999998 4677889999999999999999999999999874 5
Q ss_pred CHHHH---HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCC-ChhHHHH
Q 048179 377 DHSTF---ASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEP-GLAVWVA 451 (589)
Q Consensus 377 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 451 (589)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 54311 22334445669999999999999985 4567889999999999999999999999996 3344 6778999
Q ss_pred HHHHHHhcCCchH-HHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHH
Q 048179 452 LLSGCHNHKKFSI-GEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVR 503 (589)
Q Consensus 452 l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 503 (589)
++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999976 6789999999999988554 4566666677665543
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.5e-17 Score=165.50 Aligned_cols=252 Identities=13% Similarity=-0.008 Sum_probs=137.2
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh----ccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHH
Q 048179 255 QNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACA----QIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSC 330 (589)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (589)
..++.++|++.+++..+.. +.+...+..+...+. ..++.+.|...++......+.+..++..+...|...|++++
T Consensus 187 ~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp HSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred CchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHH
Confidence 3445555555555555432 122233333322222 22344555555555554445555555556666666666666
Q ss_pred HHHHHHhcCC--C-ChhHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048179 331 ARALFDQMQS--R-DLISWNVIIASYGI-------------------HGHGEEALSLFLQMIETMVKPDHSTFASLLSAL 388 (589)
Q Consensus 331 A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~ 388 (589)
|...|++..+ | +..+|..+...|.. .+..++|+..|++..+.. +.+..++..+...+
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 6666655442 2 23344444333321 233567888888877754 33455677888889
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChh----hHHHHHH-HHHHcCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCCc
Q 048179 389 SHSGLVEEGRYWFDLMVSKYKIQPTEK----HYACMVD-LLARAGEVEEALKIVDSM-STEPGLAVWVALLSGCHNHKKF 462 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~ 462 (589)
...|++++|...|+++.+. .|+.. .+..+.. .+...|+.++|+..|++. ...|+...+... .
T Consensus 345 ~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------K 412 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------H
T ss_pred HHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------H
Confidence 9999999999999998764 23322 2333333 235678999999998875 445655433322 3
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 048179 463 SIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVV 520 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 520 (589)
+.+..++++.++.+|+++.+|..||.+|...|++++|.+.+++..+.|.......+|+
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 4456778888899999999999999999999999999999999998776554555554
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=6.2e-15 Score=158.21 Aligned_cols=374 Identities=14% Similarity=0.082 Sum_probs=193.2
Q ss_pred hHhHHHHhhhcCCChHHHHHHhccCC-CC-----CcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHH
Q 048179 12 SVGRIIALYGGKNDIVSARKLFEELP-LR-----GVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKA 85 (589)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 85 (589)
-.+..+..|...|.+.+|..+++++. .+ +....|.++++..+. +..+..+........ ....+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHH
Confidence 33444555555555555555555543 11 123344455444444 333333333332211 12224444
Q ss_pred HhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHH
Q 048179 86 CVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAY 165 (589)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 165 (589)
|...|.+++|..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++...|++++|++.|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 555566666666665531 11111122221 4455666666665552 3455666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeh
Q 048179 166 KRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVT 245 (589)
Q Consensus 166 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 245 (589)
.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAH 1197 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHH
Confidence 442 245555666666666666666666666555543 22233334666666666666433332 2334445
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhc
Q 048179 246 WGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKC 325 (589)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (589)
|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+....+ .+..+|..+..+|...
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhh
Confidence 555666666666666666666653 25566666666666666666665555 2445555556666666
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH--HHHHHHHhcCCcHHHHHHHHH
Q 048179 326 GVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTF--ASLLSALSHSGLVEEGRYWFD 402 (589)
Q Consensus 326 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~--~~ll~a~~~~g~~~~a~~~~~ 402 (589)
|++..|..+... ...+...+..++..|.+.|.+++|+.+++..... .|. ...| ...+.+-.+.++..++.++|.
T Consensus 1264 ~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666665544 2233444556666666677777777766555432 222 1233 333333334444445555444
Q ss_pred HHHHhcCCCC------ChhhHHHHHHHHHHcCCHHHHH
Q 048179 403 LMVSKYKIQP------TEKHYACMVDLLARAGEVEEAL 434 (589)
Q Consensus 403 ~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 434 (589)
.-. +++| +...|.-++-.|.+.|+++.|.
T Consensus 1341 ~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1341 SRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred Hhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 322 3333 2455666667777777777666
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.6e-17 Score=160.54 Aligned_cols=259 Identities=10% Similarity=-0.051 Sum_probs=185.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh
Q 048179 245 TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK 324 (589)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (589)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+....+.+..++..+...|..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554432 22334444444455555555555555555554344455555666666677
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048179 325 CGVPSCARALFDQMQS--R-DLISWNVI--------------IA-SYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLS 386 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 386 (589)
.|++++|...|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 7777777777666542 1 12222222 22 3677889999999999998874 446788889999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchH
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 464 (589)
.+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++. ..| +..+|..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999874 23457889999999999999999999999863 233 57789999999999999999
Q ss_pred HHHHHHHHhccCCC------------CchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 465 GEKVAKKVLKLNPD------------DLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 465 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
|.+.++++++..|+ ++..+..++.+|...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 78899999999999999999999987543
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.5e-17 Score=162.10 Aligned_cols=271 Identities=12% Similarity=-0.007 Sum_probs=160.9
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhC
Q 048179 180 MMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISGFAQN 256 (589)
Q Consensus 180 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 256 (589)
+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3333334444444444444444444332 22344555555555556666666655555432 2445666666677777
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHH
Q 048179 257 GLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFD 336 (589)
Q Consensus 257 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 336 (589)
|++++|+..|+++.... |+........ +.... ..........+...+ ..|++++|...|+
T Consensus 146 g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~ 205 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAG-----------GAGLGPSKRILGSLL-SDSLFLEVKELFL 205 (368)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC--------------------------------CTTHHHH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhh-----------hhcccHHHHHHHHHh-hcccHHHHHHHHH
Confidence 77777777777776642 3221110000 00000 000000001122223 6677777777777
Q ss_pred hcCC--C---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Q 048179 337 QMQS--R---DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQ 411 (589)
Q Consensus 337 ~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 411 (589)
++.+ | +..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .+
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~ 282 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QP 282 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6643 2 35677777778888888888888888877753 334667777888888888888888888887763 23
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-C-----------hhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 412 PTEKHYACMVDLLARAGEVEEALKIVDSMST-EP-G-----------LAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
.+...+..+..+|.+.|++++|...++++.. .| + ..+|..+..++...|++++|..++++.++
T Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 3467778888888888888888888877521 12 1 56788888888888888888888776654
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.4e-17 Score=163.83 Aligned_cols=232 Identities=11% Similarity=0.009 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 048179 277 DSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASY 353 (589)
Q Consensus 277 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 353 (589)
+...+......+...|+++.|...++.+....+.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455888888999999999999999999977788899999999999999999999999998764 4578999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDH-----------STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
...|++++|+..|+++.+.. |+. ..+..+...+...|++++|..+|+++.+...-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998753 322 22334577889999999999999999976332236889999999
Q ss_pred HHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHH
Q 048179 423 LLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVA 500 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 500 (589)
+|.+.|++++|++.++++.. +.+..+|..++.+|...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999732 3467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 048179 501 GVRKTMRKSG 510 (589)
Q Consensus 501 ~~~~~m~~~g 510 (589)
+.++++.+..
T Consensus 302 ~~~~~al~~~ 311 (365)
T 4eqf_A 302 SNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999998743
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.1e-16 Score=149.27 Aligned_cols=247 Identities=11% Similarity=0.017 Sum_probs=201.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCC
Q 048179 250 ISGFAQNGLAGSTLELLMEMQSCGFEPDS--VSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGV 327 (589)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (589)
+.-....|++++|+..+++.... .|+. .....+.+++...|+.+.|...++ ...+|+...+..+...+...|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~---~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK---PSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC---TTSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc---ccCChhHHHHHHHHHHHcCCCc
Confidence 34456789999999998876554 4443 345667889999999998886443 2356677888899999999999
Q ss_pred HHHHHHHHHhcC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 048179 328 PSCARALFDQMQ----SR-DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFD 402 (589)
Q Consensus 328 ~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 402 (589)
.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999864 24 456677778899999999999999987 4567788889999999999999999999
Q ss_pred HHHHhcCCCCChhh---HHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 403 LMVSKYKIQPTEKH---YACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 403 ~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
.+.+. .|+... ..+++..+...|++++|..+|+++.. +++...|+.+..++...|++++|+..++++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99875 355321 12344555566999999999999843 35778899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCChHH-HHHHHHHHHhCC
Q 048179 478 DDLGIHALVSNFFAMEQKWEE-VAGVRKTMRKSG 510 (589)
Q Consensus 478 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 510 (589)
+++.++..++.++...|++++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987 578999888644
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=4.7e-16 Score=158.61 Aligned_cols=381 Identities=11% Similarity=0.005 Sum_probs=228.0
Q ss_pred CcccHHHHHHHHhccCCHHHHHHHHHHHHHh-----C---CCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC-------
Q 048179 75 DSSTFTVALKACVSLMDLKMGEEIWRKAVEL-----G---YGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR------- 139 (589)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 139 (589)
....|+.+...+...|+.++|.+.|++.++. + .+....+|+.+..+|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888999999999999987653 1 122345788899999999999999888876542
Q ss_pred C----CcchHHHHHHHHHh--CCCccHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HHccCCcHHHHHHHHHHHHhcCC
Q 048179 140 K----DLVCWSSMINGLVF--NGQPREAVDAYKRMKKEGIDADE-VVMMGLIQA---CADLGDSRFGLSVHGYSIRRHLN 209 (589)
Q Consensus 140 ~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 209 (589)
+ ...+++.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.+.|.+.+...++...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 23345555545544 45688999999998775 3443 333333333 3456777888888888887653
Q ss_pred CchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHH
Q 048179 210 LDVKVQTSLVDMYAK----TGHLDLASHVFKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD-SVSL 281 (589)
Q Consensus 210 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~ 281 (589)
.+..++..+...+.. .|++++|.+.+++... .+..++..+...|...|++++|+..|.+..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 345556555555444 4567788888877643 35567888888889999999999999888875 344 3444
Q ss_pred HHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC
Q 048179 282 VSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGH 358 (589)
Q Consensus 282 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 358 (589)
..+...+...+....+.. ...........+..+.|...|++..+ .+..+|..+...|...|+
T Consensus 285 ~~lg~~y~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR---------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 444433322111100000 00001111122335677777776543 456678889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 048179 359 GEEALSLFLQMIETMVKPDHS--TFASLLS-ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALK 435 (589)
Q Consensus 359 ~~~A~~~~~~m~~~~~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 435 (589)
+++|+..|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998865443322 2223322 34578999999999999885 44554322222 233344
Q ss_pred HHHhc-CC-CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHH
Q 048179 436 IVDSM-ST-EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVS 487 (589)
Q Consensus 436 ~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 487 (589)
++++. .. +.+..+|..|+..+...|++++|++.++++++++|.+|.+...+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44443 22 346779999999999999999999999999999999888776655
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=2.3e-15 Score=145.26 Aligned_cols=241 Identities=12% Similarity=0.008 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHH
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSV-SLVSALL 286 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~ 286 (589)
+..++..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|+..++++.+.. |+.. .+..+..
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhH
Confidence 334444445555555555555555554432 234455556666666666666666666666542 2221 1111100
Q ss_pred HHhccCchhhHHHHHHHHhhcCCCChhHHHHH-HH-HhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHH
Q 048179 287 ACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSV-ID-MYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEE 361 (589)
Q Consensus 287 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 361 (589)
.+ ++......+ .. .+...|++++|...|+++.+ .+...+..+...+...|++++
T Consensus 132 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 190 (327)
T 3cv0_A 132 AD---------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDS 190 (327)
T ss_dssp -----------------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HH---------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHH
Confidence 00 000000011 11 24444555555555554432 234555566666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 362 ALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 362 A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
|+..++++.+.. +.+..++..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++.
T Consensus 191 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 191 AAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666666666543 234555666666666666666666666666543 12335566666666666777777766666542
Q ss_pred C-CC-------------ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 442 T-EP-------------GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 442 ~-~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
. .| +..+|..+..++...|++++|..+++++++..|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 268 YMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 1 12 245666677777777777777777766655443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=9.5e-16 Score=138.24 Aligned_cols=195 Identities=14% Similarity=-0.005 Sum_probs=157.5
Q ss_pred CCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048179 309 DFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLL 385 (589)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 385 (589)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 55677788888999999999999999998765 356788899999999999999999999999864 34567888888
Q ss_pred HHHhcC-----------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCChhHHHHHH
Q 048179 386 SALSHS-----------GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPGLAVWVALL 453 (589)
Q Consensus 386 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 453 (589)
.++... |++++|...|+++.+. -+.+...+..+..+|...|++++|++.|++.. ...+...|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 899999 9999999999999864 23347788999999999999999999999862 126788999999
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 454 SGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 454 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
.++...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988754
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=3.3e-14 Score=143.28 Aligned_cols=376 Identities=12% Similarity=0.027 Sum_probs=226.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCh---HHHHHHHHhcCCCCcchHHHHHHHHHhCC--
Q 048179 82 ALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKM---NEAMVAFEKMQRKDLVCWSSMINGLVFNG-- 156 (589)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 156 (589)
+...+.+.|++++|.+.|+++.+.| +...+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566778888888888887775 344455566666667777 78888888877667777777777555555
Q ss_pred ---CccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcH---HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC----
Q 048179 157 ---QPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSR---FGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTG---- 226 (589)
Q Consensus 157 ---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 226 (589)
++++|+..|++..+.|.. ..+..+...+...+..+ .+.+.+......| ++.....|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 667888888888876532 25555666665544433 3344444444444 4556667777777777
Q ss_pred CHHHHHHHHhhcCCCCeehHHHHHHHHHhCC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 048179 227 HLDLASHVFKNMSRINIVTWGALISGFAQNG---LAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGY 303 (589)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 303 (589)
..+.+..+++.....++.++..|...|...| +.++|+..|++..+.| .++...+..+...+...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g------------ 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA------------ 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC------------
Confidence 4455666677777767778888888888888 8888998888888876 34443333333322221
Q ss_pred HhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048179 304 TVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIAS-Y--GIHGHGEEALSLFLQMIETMVKPDHST 380 (589)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~t 380 (589)
....+++++|...|++....+...+..+... + ...+++++|+..|++..+.| +...
T Consensus 227 ------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 227 ------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp ------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 0011566667777766553345566666655 3 45778888888888887766 4555
Q ss_pred HHHHHHHHhcCC-----cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHhcCCCCChhHHHH
Q 048179 381 FASLLSALSHSG-----LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR----AGEVEEALKIVDSMSTEPGLAVWVA 451 (589)
Q Consensus 381 ~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ 451 (589)
...|...|. .| ++++|...|+... +.+...+..|..+|.. ..++++|..+|++.....+......
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~ 359 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFA 359 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHH
Confidence 566666665 44 8888888888765 2456677777777766 3488889988888765556666777
Q ss_pred HHHHHHh----cCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh--CCChHHHHHHHHHHHh
Q 048179 452 LLSGCHN----HKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM--EQKWEEVAGVRKTMRK 508 (589)
Q Consensus 452 l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~ 508 (589)
|...|.. ..|.++|...++++.+.++.. +...+..+... .++.++|.++.++.+.
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7776653 458889999999988876543 33444444332 3455666666665543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.8e-14 Score=133.64 Aligned_cols=218 Identities=10% Similarity=-0.006 Sum_probs=167.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh
Q 048179 245 TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK 324 (589)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (589)
.|..+...+...|++++|+..|++..+.. .+...+ ..+..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~----------------------------------~~~~~~~~~ 50 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYL----------------------------------NNRAAAEYE 50 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHH----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHH----------------------------------HHHHHHHHH
Confidence 45566666677777777777777666654 444444 555555666
Q ss_pred cCCHHHHHHHHHhcCC--C----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcH
Q 048179 325 CGVPSCARALFDQMQS--R----D----LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLV 394 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~ 394 (589)
.|++++|...|++..+ | + ...|..+...+...|++++|+..|++..+. .|+.. .+...|++
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~ 121 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNA 121 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHH
Confidence 6666666666665543 1 1 467778888888899999999999988875 34432 35556889
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 048179 395 EEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 395 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 472 (589)
++|...++.+... .+.+...+..+...+...|++++|.+.++++.. +.+..+|..+...+...|++++|+..++++
T Consensus 122 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998863 233467788899999999999999999998732 346778999999999999999999999999
Q ss_pred hccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 473 LKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 473 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.7e-15 Score=136.59 Aligned_cols=239 Identities=10% Similarity=0.014 Sum_probs=185.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CCCHHHHHHHHH
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSR--INIVTWGALISGFAQNGLAGSTLELLMEMQSCGF--EPDSVSLVSALL 286 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~ 286 (589)
....+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..+.+..+... .|+...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------ 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH------
Confidence 356788899999999999999999987643 6677899999999999999999999999876421 111100
Q ss_pred HHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHH
Q 048179 287 ACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS--RDLISWNVIIASYGIHGHGEEALS 364 (589)
Q Consensus 287 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 364 (589)
...++..+...|.+.|++++|...|+++.+ ++ ...+...|++++|+.
T Consensus 78 ------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 78 ------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELK 126 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHH
Confidence 123445666777777777777777777653 33 234566788899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC
Q 048179 365 LFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TE 443 (589)
Q Consensus 365 ~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 443 (589)
.++++.... +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..++.+.|++++|.+.++++. ..
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999888753 234557788888899999999999999998874 23457788889999999999999999998873 23
Q ss_pred C-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccC------CCCchhHHHHHHH
Q 048179 444 P-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN------PDDLGIHALVSNF 489 (589)
Q Consensus 444 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 489 (589)
| +..+|..+..++...|++++|...+++++++. |++...+..+..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4 57788899999999999999999999999998 8877777766543
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=164.90 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=114.8
Q ss_pred CCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048179 309 DFNLVLGTSVIDMYSKCGVPSCARALFDQMQ-------SRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTF 381 (589)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 381 (589)
.....+||+||++|+++|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678999999999999999999997753 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCc-HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 382 ASLLSALSHSGL-VEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 382 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
+++|.++++.|. .++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 47899999999998 99999999999998877776555555544333
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=166.00 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=114.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHhcC-------CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHH
Q 048179 110 DVFVGSSMLNLYVKCGKMNEAMVAFEKMQ-------RKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMG 182 (589)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 182 (589)
-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997753 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCc-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048179 183 LIQACADLGDS-RFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNM 238 (589)
Q Consensus 183 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 238 (589)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++...+++..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999985 789999999999999999999999998777765555554444433
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.8e-14 Score=135.13 Aligned_cols=241 Identities=8% Similarity=-0.051 Sum_probs=183.3
Q ss_pred hCCChhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHH
Q 048179 255 QNGLAGSTLELLMEMQSCGF---EPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCA 331 (589)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 331 (589)
..|++++|+..|+++.+... +.+..++..+...+...|+++.|...+..+....+.+..++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 34667777777777776531 113455666666777777777777777777755666777888889999999999999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 048179 332 RALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKY 408 (589)
Q Consensus 332 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 408 (589)
...|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999988764 46788999999999999999999999999886 344444444555567779999999999888764
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC-CC-----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchh
Q 048179 409 KIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTE-PG-----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGI 482 (589)
Q Consensus 409 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 482 (589)
.+++...+ .++..+...++.++|.+.+++.... |+ ..+|..+...+...|++++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4777888889999999999987543 32 5788899999999999999999999999999987654
Q ss_pred HHHHHHHHHhCCChHHHHHHH
Q 048179 483 HALVSNFFAMEQKWEEVAGVR 503 (589)
Q Consensus 483 ~~~l~~~~~~~g~~~~a~~~~ 503 (589)
+ +.++...|++++|++.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788899999998776
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.9e-14 Score=134.79 Aligned_cols=246 Identities=11% Similarity=-0.017 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 048179 214 VQTSLVDMYAKTGHLDLASHVFKNMSR---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQ 290 (589)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (589)
........+...|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.. ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~---------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA---------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH----------
Confidence 344556667777777777777776643 234467777777777777777777777777632 22111
Q ss_pred cCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 048179 291 IGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFL 367 (589)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 367 (589)
....+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|+
T Consensus 73 --------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 73 --------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred --------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 111234444455555555555555554432 233455555555555555666655555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC---HHHHHHHHHhcC---
Q 048179 368 QMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE---VEEALKIVDSMS--- 441 (589)
Q Consensus 368 ~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--- 441 (589)
+..+.. +.+...+..+...+...+++++|...|+.+.+. .+.+...+..+..++...|+ +++|...++++.
T Consensus 133 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 133 KQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 554431 222334444442333334666666666666542 12224455555566665565 555555555431
Q ss_pred -CCCC------hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC
Q 048179 442 -TEPG------LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ 494 (589)
Q Consensus 442 -~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 494 (589)
..|+ ..+|..+...|...|++++|.+.++++++++|+++.++..+..+....+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1133 2467778888899999999999999999999999988888877665544
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=7.6e-14 Score=140.61 Aligned_cols=344 Identities=11% Similarity=0.012 Sum_probs=233.9
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc---HHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 048179 147 SMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDS---RFGLSVHGYSIRRHLNLDVKVQTSLVDMYA 223 (589)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (589)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...+....+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 334444555556667777 8999999888754 4555666777555
Q ss_pred hcC-----CHHHHHHHHhhcCCC-CeehHHHHHHHHHhCCChh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCch
Q 048179 224 KTG-----HLDLASHVFKNMSRI-NIVTWGALISGFAQNGLAG---STLELLMEMQSCGFEPDSVSLVSALLACAQIGFL 294 (589)
Q Consensus 224 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 294 (589)
..+ ++++|...|++..++ +...+..|...|...+..+ ++.+.+......| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 554 788999999887653 5568888888888776544 4555555555544 234555566666666755
Q ss_pred hhHHHHHHHHh-hcCCCChhHHHHHHHHhHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHhc----CCHHHHH
Q 048179 295 KLGKSIHGYTV-RRFDFNLVLGTSVIDMYSKCG---VPSCARALFDQMQS---RDLISWNVIIASYGIH----GHGEEAL 363 (589)
Q Consensus 295 ~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 363 (589)
+.+........ .....++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 55544433333 333334448889999999999 89999999988754 3334446677777654 7899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-----CHHHHHH
Q 048179 364 SLFLQMIETMVKPDHSTFASLLSA-L--SHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAG-----EVEEALK 435 (589)
Q Consensus 364 ~~~~~m~~~~~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 435 (589)
..|++.. .| +...+..+... + ...+++++|...|++..+. + +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 33 34455555555 3 5689999999999998864 3 6777888888887 55 9999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHH
Q 048179 436 IVDSMSTEPGLAVWVALLSGCHN----HKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM----EQKWEEVAGVRKTMR 507 (589)
Q Consensus 436 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 507 (589)
+|++.. ..+...+..|...|.. ..|+++|...++++.+. .++.+...|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999988 6678888888877766 34999999999999874 567889999999986 568999999999999
Q ss_pred hCCCc
Q 048179 508 KSGMK 512 (589)
Q Consensus 508 ~~g~~ 512 (589)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 87753
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=1.1e-11 Score=129.11 Aligned_cols=218 Identities=7% Similarity=-0.075 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHH-HHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC
Q 048179 261 STLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGK-SIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQ 339 (589)
Q Consensus 261 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 339 (589)
.+..+|++.+.. ++-+...|...+.-+...|+.+.|. .+++.+....|.+..++..++....+.|+++.|+++|+++.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 355678877765 3446677777777778888988996 99999997778888889999999999999999999999876
Q ss_pred C-------------CC------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCc
Q 048179 340 S-------------RD------------LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSH-SGL 393 (589)
Q Consensus 340 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~-~g~ 393 (589)
+ |+ ...|...+....+.|..+.|..+|.+.++....+....|......-.+ .++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 3 21 236888888888899999999999999876112222333322222223 356
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC----ChhHHHHHHHHHHhcCCchHHHHH
Q 048179 394 VEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EP----GLAVWVALLSGCHNHKKFSIGEKV 468 (589)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~~~~~~a~~~ 468 (589)
.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++... .| ....|...+.--..+|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999854 34566778899999999999999999999754 24 345788888888999999999999
Q ss_pred HHHHhccCCCCch
Q 048179 469 AKKVLKLNPDDLG 481 (589)
Q Consensus 469 ~~~~~~~~p~~~~ 481 (589)
.+++.+..|+++.
T Consensus 564 ~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 564 EKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHSTTCCH
T ss_pred HHHHHHhCCCCcH
Confidence 9999999998753
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=1.4e-13 Score=127.25 Aligned_cols=197 Identities=6% Similarity=-0.042 Sum_probs=156.1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSAL 388 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~ 388 (589)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44556777777788888888888877653 356677888888888888888888888888764 34567777888888
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHH
Q 048179 389 SHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIG 465 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a 465 (589)
...|++++|..+++.+.+. +..|+ ...+..+..++...|++++|.+.++++.. .| +..++..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888999998888888751 34453 66777888888889999999988888632 33 567788888888899999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 466 EKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999889888888889999999999999999998887644
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=4.5e-14 Score=129.71 Aligned_cols=170 Identities=12% Similarity=0.063 Sum_probs=75.0
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSG 392 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g 392 (589)
..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 3333444444444444444443321 233344444444444455555555554444432 223334444444444455
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHH
Q 048179 393 LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAK 470 (589)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 470 (589)
++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+..+|..+..++...|++++|...++
T Consensus 140 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 140 QPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 555555555444432 112234444444444444555554444444311 1223344444444445555555555555
Q ss_pred HHhccCCCCchhHHHHHH
Q 048179 471 KVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 471 ~~~~~~p~~~~~~~~l~~ 488 (589)
++++++|+++..+..++.
T Consensus 218 ~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC
T ss_pred HHHccCcchHHHHHHHHH
Confidence 555555544444444433
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=4.2e-14 Score=129.90 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=157.1
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSA 387 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a 387 (589)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455567778888999999999999998754 356788889999999999999999999999874 4467788889999
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHH
Q 048179 388 LSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIG 465 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a 465 (589)
+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 244577889999999999999999999998732 34677889999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 466 EKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998743
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.7e-13 Score=124.06 Aligned_cols=198 Identities=12% Similarity=-0.021 Sum_probs=164.2
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSA 387 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a 387 (589)
+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455667788888888999999998887653 456788888888999999999999999988764 4456788888888
Q ss_pred HhcC-CcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCCch
Q 048179 388 LSHS-GLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMST-EP-GLAVWVALLSGCHNHKKFS 463 (589)
Q Consensus 388 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~ 463 (589)
+... |++++|..+++.+.+. +..|+ ...+..+..++...|++++|.+.++++.. .| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 9999999999998862 33344 66788888999999999999999988632 34 5778888888999999999
Q ss_pred HHHHHHHHHhccCC-CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 464 IGEKVAKKVLKLNP-DDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 464 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999999 899999889999999999999999999887543
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.1e-13 Score=135.14 Aligned_cols=246 Identities=7% Similarity=0.022 Sum_probs=179.9
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCc-hhhHHHHHHHHhhcCCCChhHHHHHHHHh
Q 048179 244 VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGF-LKLGKSIHGYTVRRFDFNLVLGTSVIDMY 322 (589)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (589)
..|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ ++.|...++.+....+.+..+|..+..+|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345666666667777777777777776642 2234455566666666664 67777666666666666777778888888
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCcHHHH-
Q 048179 323 SKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSH-SGLVEEG- 397 (589)
Q Consensus 323 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~-~g~~~~a- 397 (589)
.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 888888888888887764 466788888888888899999999999988864 3356778888888887 5655666
Q ss_pred ----HHHHHHHHHhcCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC--------C-
Q 048179 398 ----RYWFDLMVSKYKIQPTEKHYACMVDLLARAG--EVEEALKIVDSMSTEP-GLAVWVALLSGCHNHK--------K- 461 (589)
Q Consensus 398 ----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~--------~- 461 (589)
+..|+.+.+. -+-+...|..+..++...| ++++|++.++++...| +...+..++..+...| +
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4778877753 2234677888888888887 6888988888874444 4567778888887764 2
Q ss_pred chHHHHHHHHH-hccCCCCchhHHHHHHHHHhC
Q 048179 462 FSIGEKVAKKV-LKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 462 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 493 (589)
+++|+++++++ ++++|.....|..++..+..+
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58899999999 899999888888887776543
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=6.1e-13 Score=124.63 Aligned_cols=224 Identities=10% Similarity=-0.024 Sum_probs=161.6
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHH
Q 048179 242 NIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDM 321 (589)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 321 (589)
+..++..+...+...|++++|+..|++..+.+ +...+ ..+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~----------------------------------~~lg~~ 47 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC----------------------------------FNLGVL 47 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH----------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHH----------------------------------HHHHHH
Confidence 44566667777777788888888887777622 22233 445555
Q ss_pred hHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 048179 322 YSK----CGVPSCARALFDQMQS-RDLISWNVIIASYGI----HGHGEEALSLFLQMIETMVKPDHSTFASLLSALSH-- 390 (589)
Q Consensus 322 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~-- 390 (589)
|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 48 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 48 YYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 566 6667777777766543 355667777777777 788888888888777764 56667777777777
Q ss_pred --CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cC
Q 048179 391 --SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR----AGEVEEALKIVDSMSTEPGLAVWVALLSGCHN----HK 460 (589)
Q Consensus 391 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 460 (589)
.+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 78888888888887764 2 45666777777777 78888888888876444456677777778877 88
Q ss_pred CchHHHHHHHHHhccCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 048179 461 KFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM----EQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 461 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 511 (589)
++++|+..++++++.+| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888888765 6677888888888 8888888888888877654
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=2.3e-13 Score=119.08 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=140.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048179 342 DLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMV 421 (589)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 421 (589)
+...|..+...|...|++++|++.|++.++.. +-+..++..+..++.+.|++++|...++.+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678888888888999999999999888764 335668888888899999999999999988763 234466777888
Q ss_pred HHHHHcCCHHHHHHHHHhcCC-C-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHH
Q 048179 422 DLLARAGEVEEALKIVDSMST-E-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEV 499 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 499 (589)
..+...++++.|.+.+++... . .+..++..+...+...|++++|++.++++++++|+++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 889999999999999888632 3 35778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 048179 500 AGVRKTMRKSG 510 (589)
Q Consensus 500 ~~~~~~m~~~g 510 (589)
.+.++++.+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999988754
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=6.4e-13 Score=122.78 Aligned_cols=206 Identities=14% Similarity=0.075 Sum_probs=155.0
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHh
Q 048179 243 IVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMY 322 (589)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (589)
...|..+...+...|++++|+..|+++.+.. | .+..++..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~---------------------------------~~~~~~~~la~~~ 81 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P---------------------------------SSADAHAALAVVF 81 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T---------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C---------------------------------ChHHHHHHHHHHH
Confidence 4556667777777777777777777776542 2 2333445666667
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHH
Q 048179 323 SKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 323 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~ 398 (589)
...|++++|.+.|+++.+ .+...|..+...+...|++++|++.|+++.+.+..|+ ...+..+..++...|++++|.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777776542 3556777788888888888888888888877333453 457777888888999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
.+|+.+.+. .+.+...+..++..+.+.|++++|.+.++++. .. .+...+..+...+...|++++|.+.++++++..
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999988864 23447788889999999999999999998873 23 456678888888999999999999999999999
Q ss_pred CCCchhHHH
Q 048179 477 PDDLGIHAL 485 (589)
Q Consensus 477 p~~~~~~~~ 485 (589)
|+++.....
T Consensus 240 p~~~~~~~~ 248 (252)
T 2ho1_A 240 PGSLEYQEF 248 (252)
T ss_dssp TTSHHHHHH
T ss_pred CCCHHHHHH
Confidence 988766543
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=3.5e-13 Score=126.12 Aligned_cols=228 Identities=7% Similarity=0.013 Sum_probs=176.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh
Q 048179 245 TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK 324 (589)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (589)
.+......+...|++++|+..|++..+. .| .+...+..+...|..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p---------------------------------~~~~~~~~l~~~~~~ 49 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK--KY---------------------------------NSPYIYNRRAVCYYE 49 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TC---------------------------------CCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CC---------------------------------CcHHHHHHHHHHHHH
Confidence 3444555666666666666666666654 22 234445667778888
Q ss_pred cCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 048179 325 CGVPSCARALFDQMQS--RD----LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 398 (589)
.|++++|...|+++.+ ++ ..+|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|.
T Consensus 50 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH
Confidence 8888888888887654 22 2358889999999999999999999999864 345678999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCC---chHHHHHHHHHh
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKK---FSIGEKVAKKVL 473 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 473 (589)
..|+++.+. .+.+...+..+...+...+++++|.+.++++. ..| +...+..+..++...|+ +++|...+++++
T Consensus 129 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 129 QYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 999998852 23346777778744555669999999999873 234 46778888888888888 999999999999
Q ss_pred ccC---CCC-----chhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 474 KLN---PDD-----LGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 474 ~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
++. |+. ..+|..++.+|...|++++|.+.++++.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 875 442 2588889999999999999999999998744
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=4.7e-13 Score=130.64 Aligned_cols=226 Identities=6% Similarity=-0.010 Sum_probs=195.2
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCC-HHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 048179 279 VSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGV-PSCARALFDQMQS---RDLISWNVIIASYG 354 (589)
Q Consensus 279 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~ 354 (589)
..+..+...+...|+.+.|...++.++...+.+..+|+.+..++...|+ +++|+..|+++.. .+...|..+..++.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4566677778889999999999999998888899999999999999997 9999999999874 46789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-cCCHHHH
Q 048179 355 IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR-AGEVEEA 433 (589)
Q Consensus 355 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 433 (589)
..|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+.+...|..+..++.+ .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999874 446778999999999999999999999999974 23457889999999999 6665777
Q ss_pred -----HHHHHhc-CCCC-ChhHHHHHHHHHHhcC--CchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC---------C
Q 048179 434 -----LKIVDSM-STEP-GLAVWVALLSGCHNHK--KFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ---------K 495 (589)
Q Consensus 434 -----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~ 495 (589)
++.+++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.| .
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4777765 3345 5678999999998888 799999999998 999999999999999999975 3
Q ss_pred hHHHHHHHHHH-Hh
Q 048179 496 WEEVAGVRKTM-RK 508 (589)
Q Consensus 496 ~~~a~~~~~~m-~~ 508 (589)
.++|.++++++ .+
T Consensus 334 ~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 334 LNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999998 54
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=2.1e-12 Score=120.98 Aligned_cols=226 Identities=12% Similarity=-0.023 Sum_probs=181.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CeehHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSRI-NIVTWGALISGFAQ----NGLAGSTLELLMEMQSCGFEPDSVSLVSAL 285 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 285 (589)
++..+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~---- 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC---- 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH----
Confidence 6678888999999999999999999987764 55678888899999 999999999999988764 33344
Q ss_pred HHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----c
Q 048179 286 LACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK----CGVPSCARALFDQMQS-RDLISWNVIIASYGI----H 356 (589)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~ 356 (589)
..+..+|.. .+++++|...|++..+ .+..++..+...|.. .
T Consensus 78 ------------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 78 ------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp ------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred ------------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 344555555 6777777777766543 356677778888888 8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cC
Q 048179 357 GHGEEALSLFLQMIETMVKPDHSTFASLLSALSH----SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR----AG 428 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 428 (589)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 89999999999988865 45566677777777 89999999999998864 256778888999999 99
Q ss_pred CHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCc
Q 048179 429 EVEEALKIVDSMSTEPGLAVWVALLSGCHN----HKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 429 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
++++|.+.+++.....+...+..+...+.. .+++++|.+.++++++++|+++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 999999999987544447788888888988 9999999999999999998654
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=9.8e-14 Score=138.56 Aligned_cols=264 Identities=8% Similarity=-0.042 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CC-e----ehHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCHHHHHHHHH
Q 048179 215 QTSLVDMYAKTGHLDLASHVFKNMSR--IN-I----VTWGALISGFAQNGLAGSTLELLMEMQSCGF-EPDSVSLVSALL 286 (589)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~ 286 (589)
+..+...+...|++++|...|+++.+ ++ . ..|..+...|...|++++|+..|++..+... ..+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------- 121 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND--------- 121 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---------
Confidence 33445555556666666666655443 11 1 2455555555556666666665555443200 000
Q ss_pred HHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcC
Q 048179 287 ACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----R----DLISWNVIIASYGIHG 357 (589)
Q Consensus 287 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g 357 (589)
.+....++..+...|...|++++|...|++..+ . ...++..+...|...|
T Consensus 122 ---------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 122 ---------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 111233445566666666777766666665442 1 2245666777777777
Q ss_pred C-----------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--
Q 048179 358 H-----------------GEEALSLFLQMIET----MVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-- 413 (589)
Q Consensus 358 ~-----------------~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-- 413 (589)
+ +++|++.+++..+. +..|. ..++..+...+...|++++|..+++++.+...-.++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 7 78888777776542 21122 246777788888899999999999887754221122
Q ss_pred --hhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CC----ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC----
Q 048179 414 --EKHYACMVDLLARAGEVEEALKIVDSMST----EP----GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD---- 479 (589)
Q Consensus 414 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---- 479 (589)
...+..+..+|...|++++|.+.+++... .. ...++..+...+...|++++|...+++++++.++.
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 23677888899999999999998887621 11 24577888888999999999999999999775432
Q ss_pred --chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 480 --LGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 480 --~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
...+..++.+|...|++++|.+.+++..+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45888999999999999999999998875
No 57
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=3.5e-13 Score=121.30 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 048179 357 GHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKI 436 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 436 (589)
|++++|+..|++..+.. +-+...+..+..++...|++++|+..|+++.+. . .+...+..+..+|...|++++|+..
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555542 123445555555555556666666666655554 2 4455555555566666666666665
Q ss_pred HHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 048179 437 VDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 437 ~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 472 (589)
|++.. ..| +...+..+...+...|++++|+..+++.
T Consensus 174 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 174 YAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55542 122 3445555555566666666666555544
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=4e-13 Score=133.68 Aligned_cols=268 Identities=10% Similarity=-0.015 Sum_probs=164.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----eehHHHHHHHHHhCCChhHHHHHHHHHHhcCCC-CCHHHHH
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSR--I-N----IVTWGALISGFAQNGLAGSTLELLMEMQSCGFE-PDSVSLV 282 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~ 282 (589)
....+..+...+...|++++|...|++..+ + + ..+|..+...+...|++++|+..+++....... .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---- 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc----
Confidence 334455555666666666666666665543 2 1 134555556666666666666666655432100 000
Q ss_pred HHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHH
Q 048179 283 SALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----RD----LISWNVIIASY 353 (589)
Q Consensus 283 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 353 (589)
+....++..+...|...|++++|...|++..+ ++ ..++..+...|
T Consensus 84 --------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 84 --------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 01123344555566666666666666655432 11 23566666667
Q ss_pred HhcCC--------------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 048179 354 GIHGH--------------------GEEALSLFLQMIET----MVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKY 408 (589)
Q Consensus 354 ~~~g~--------------------~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 408 (589)
...|+ +++|+..+++..+. +..|. ..++..+...+...|++++|...++++.+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 77777 77777777665432 11111 2356677777778888888888888776532
Q ss_pred CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 409 KIQPT----EKHYACMVDLLARAGEVEEALKIVDSMST----EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 409 ~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
.-.++ ...+..+..+|...|++++|...+++... .++ ..++..+...+...|++++|...+++++++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 22222 23677778888888888888888877521 112 4466777778888888888888888888764
Q ss_pred CCC------chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 477 PDD------LGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 477 p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 55777888888888888888888887764
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=1.4e-13 Score=137.13 Aligned_cols=292 Identities=11% Similarity=-0.012 Sum_probs=183.1
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----CeehHH
Q 048179 180 MMGLIQACADLGDSRFGLSVHGYSIRRHLNLD---VKVQTSLVDMYAKTGHLDLASHVFKNMSR-----I----NIVTWG 247 (589)
Q Consensus 180 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~ 247 (589)
+......+...|+++.|...++.+++...... ..++..+...|...|++++|...|++... . ...++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33444445555555555555555555432111 23555666666667777777666665432 1 134566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhccCc-------------hhhHHHHHHHHhhcCC
Q 048179 248 ALISGFAQNGLAGSTLELLMEMQSCGF-EPD----SVSLVSALLACAQIGF-------------LKLGKSIHGYTVRRFD 309 (589)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~-------------~~~a~~~~~~~~~~~~ 309 (589)
.+...|...|++++|+..+.+..+... .++ ..++..+...+...|+ .+.+...
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--------- 162 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--------- 162 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---------
Confidence 777788888888888888877765310 011 1233333333444444 0000000
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----R----DLISWNVIIASYGIHGHGEEALSLFLQMIETMV-KPD-- 377 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-- 377 (589)
+++|...|++..+ . ...++..+...+...|++++|+..+++..+... .++
T Consensus 163 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 163 ------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 4444444443321 1 124567777888888888888888888765311 112
Q ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC--
Q 048179 378 --HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMVDLLARAGEVEEALKIVDSMST----EPG-- 445 (589)
Q Consensus 378 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~-- 445 (589)
..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|.+.+++... .++
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 236777888888999999999999887653211122 45677888999999999999999887621 122
Q ss_pred --hhHHHHHHHHHHhcCCchHHHHHHHHHhccC------CCCchhHHHHHHHHHhCCChHH
Q 048179 446 --LAVWVALLSGCHNHKKFSIGEKVAKKVLKLN------PDDLGIHALVSNFFAMEQKWEE 498 (589)
Q Consensus 446 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 498 (589)
..++..+...+...|++++|...+++++++. |....++..++.+|...|+...
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 4577888889999999999999999998763 3345678889999988887643
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.5e-12 Score=117.82 Aligned_cols=206 Identities=9% Similarity=-0.052 Sum_probs=154.6
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhH
Q 048179 244 VTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYS 323 (589)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (589)
..|..+...+...|++++|+..|+++.+. .+.+..++..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~ 53 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DPKNELAWLVRAEIYQ 53 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------CccchHHHHHHHHHHH
Confidence 44555666666666666666666666554 2233444566667777
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHH
Q 048179 324 KCGVPSCARALFDQMQS---RDLISWNVIIASYGIH-GHGEEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGR 398 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~ 398 (589)
..|++++|...|+++.+ .+..+|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|++++|.
T Consensus 54 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776643 3566788888888888 999999999999887333344 467788888899999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--C-CChhHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--E-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKL 475 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 475 (589)
..|+.+.+. .+.+...+..++.++.+.|++++|.+.++++.. + .+...+..+...+...|+.+.|...++.+.+.
T Consensus 134 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999998864 233477888899999999999999999988632 2 35666777777788999999999999999999
Q ss_pred CCCCchhHHHH
Q 048179 476 NPDDLGIHALV 486 (589)
Q Consensus 476 ~p~~~~~~~~l 486 (589)
.|+++.....+
T Consensus 212 ~p~~~~~~~~l 222 (225)
T 2vq2_A 212 FPYSEELQTVL 222 (225)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHh
Confidence 99988776554
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=3.8e-13 Score=129.87 Aligned_cols=197 Identities=10% Similarity=-0.008 Sum_probs=144.7
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------HHHHH
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQS-----RD----LISWNVIIASYGIHGH--------------------GEEAL 363 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 363 (589)
.++..+...|...|++++|...|++..+ ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3455666677777777777777766542 12 2366677777777788 88888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHH
Q 048179 364 SLFLQMIET----MVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMVDLLARAGEVEEAL 434 (589)
Q Consensus 364 ~~~~~m~~~----~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 434 (589)
..+++.... +..|. ..++..+...+...|++++|...++.+.+...-.++ ...+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887776542 21221 346777788888899999999999887654221122 336788889999999999999
Q ss_pred HHHHhcCC----CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------chhHHHHHHHHHhCCChHHHH
Q 048179 435 KIVDSMST----EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD------LGIHALVSNFFAMEQKWEEVA 500 (589)
Q Consensus 435 ~~~~~~~~----~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 500 (589)
+.+++... .++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 99987621 122 4567788888999999999999999999875432 457889999999999999999
Q ss_pred HHHHHHHhC
Q 048179 501 GVRKTMRKS 509 (589)
Q Consensus 501 ~~~~~m~~~ 509 (589)
+.++++.+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998763
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.8e-13 Score=138.72 Aligned_cols=204 Identities=8% Similarity=-0.010 Sum_probs=169.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhHhcCCH-HHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048179 298 KSIHGYTVRRFDFNLVLGTSVIDMYSKCGVP-SCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETM 373 (589)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 373 (589)
...+.......+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++..+.
T Consensus 88 l~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~- 166 (474)
T 4abn_A 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH- 166 (474)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 3333333333445666777777888888888 888888887653 35678889999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHhcC---------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc--------CCHHHHHHH
Q 048179 374 VKPDHSTFASLLSALSHS---------GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA--------GEVEEALKI 436 (589)
Q Consensus 374 ~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~ 436 (589)
.|+...+..+..++... |++++|...|+++.+. .+.+...|..+..+|... |++++|++.
T Consensus 167 -~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 167 -CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp -CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 57778888889999999 9999999999999874 234478889999999998 999999999
Q ss_pred HHhcCC-CC----ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 048179 437 VDSMST-EP----GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 437 ~~~~~~-~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 505 (589)
|++... .| +...|..+..++...|++++|++.++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998743 45 6788999999999999999999999999999999999999999999999999999975543
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=3.9e-13 Score=125.98 Aligned_cols=218 Identities=10% Similarity=-0.055 Sum_probs=179.3
Q ss_pred hccCchhhHHHHHHHHhhcC----CCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHH
Q 048179 289 AQIGFLKLGKSIHGYTVRRF----DFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEE 361 (589)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 361 (589)
...|+++.|...++.+.... +.+..++..+...|...|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 44578899999999988332 23577889999999999999999999998764 467899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 362 ALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 362 A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
|+..|+++.+.. +.+..++..+..++...|++++|..+|+.+.+. .|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999864 345778899999999999999999999999864 3554445555566678899999999997752
Q ss_pred -CCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC----CchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 442 -TEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD----DLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 442 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
..|+......++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2333333344777788889999999999999987764 37889999999999999999999999998744
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.8e-10 Score=120.06 Aligned_cols=435 Identities=12% Similarity=0.022 Sum_probs=282.4
Q ss_pred CchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC---hHHHHH
Q 048179 56 SPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGK---MNEAMV 132 (589)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 132 (589)
...+.+..|+..+..+ +-|..+|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.|. .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4566676777777665 458889999999988888999999999999887 56677788888888888888 999999
Q ss_pred HHHhcCC-----CCcchHHHHHHHHHhCCCc--------cHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHHc-------
Q 048179 133 AFEKMQR-----KDLVCWSSMINGLVFNGQP--------REAVDAYKRMKK-EGI-DADE-VVMMGLIQACAD------- 189 (589)
Q Consensus 133 ~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~~-~t~~~ll~~~~~------- 189 (589)
+|++... +++..|...+....+.++. +.+.++|+.... .|. .|+. ..|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9988764 5677787777765555543 223466666543 355 4543 444444443322
Q ss_pred --cCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHH
Q 048179 190 --LGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLM 267 (589)
Q Consensus 190 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (589)
.++++.+..+|..++......-..+|......-...+. ..+.+++.+ ....++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHH
Confidence 22345566666666542211122333222111110000 001111110 0112333444443
Q ss_pred HHHhc--CC----C-----------C-----CH---HHHHHHHHHHhccC-------chhhHHHHHHHHhhcCCCChhHH
Q 048179 268 EMQSC--GF----E-----------P-----DS---VSLVSALLACAQIG-------FLKLGKSIHGYTVRRFDFNLVLG 315 (589)
Q Consensus 268 ~m~~~--g~----~-----------p-----~~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~ 315 (589)
++... ++ + | +. ..|...+.---..+ .......+++.++..++....+|
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW 346 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIW 346 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 32210 11 0 1 00 12222222211111 12334567888887788899999
Q ss_pred HHHHHHhHhcCCHHHHH-HHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC-----
Q 048179 316 TSVIDMYSKCGVPSCAR-ALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMV---------KPD----- 377 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~----- 377 (589)
...+..+...|+.++|. .+|++... .+...|-..+...-..|++++|.++|+++++... .|+
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 99999999999999996 99988754 3556688888888899999999999999886410 132
Q ss_pred -------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHhcCC--CCChh
Q 048179 378 -------HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAG-EVEEALKIVDSMST--EPGLA 447 (589)
Q Consensus 378 -------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~p~~~ 447 (589)
...|...+....+.|..+.|..+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.... ..+..
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 2357777777778899999999999998641 1223445554444555554 58999999998733 23566
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLNPD---DLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
.|...+.-....|+.+.|..+|+++++..|+ ....|..+...-.+.|+.+.+.++.+++.+.-+
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7778888888899999999999999998873 557788888888899999999999999986544
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=2.4e-12 Score=112.54 Aligned_cols=168 Identities=11% Similarity=0.010 Sum_probs=145.1
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLS 386 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 386 (589)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|+..+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567889999999999999999999998764 467789999999999999999999999998864 345667777888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchH
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 464 (589)
.+...++++.+...+..+... .+.+...+..+..+|.+.|++++|++.|++.. ..| +..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 899999999999999998864 34457788999999999999999999999873 244 67789999999999999999
Q ss_pred HHHHHHHHhccCCCCc
Q 048179 465 GEKVAKKVLKLNPDDL 480 (589)
Q Consensus 465 a~~~~~~~~~~~p~~~ 480 (589)
|++.++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999764
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.9e-11 Score=116.52 Aligned_cols=217 Identities=12% Similarity=0.057 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-------ccCch-------hhHHHHHHHHhh-cCCCChhHHHHHHHHhHh
Q 048179 260 GSTLELLMEMQSCGFEPDSVSLVSALLACA-------QIGFL-------KLGKSIHGYTVR-RFDFNLVLGTSVIDMYSK 324 (589)
Q Consensus 260 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 324 (589)
++|+..|++..... +.+...|......+. ..|+. +.|..+++.+.. -.+.+..++..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665531 223334444444332 23443 556666666664 234455566667777777
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCcHHHHHH
Q 048179 325 CGVPSCARALFDQMQS--R-DLI-SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALS-HSGLVEEGRY 399 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~-~~g~~~~a~~ 399 (589)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776654 2 233 67777777777777777777777776643 223333433322221 2577777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CC--ChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST----EP--GLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
+|+.+.+.+ +.+...|..++..+.+.|++++|..+|++... .| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777766532 23456666777777777777777777776522 33 24466666666667777777777777777
Q ss_pred ccCCCCc
Q 048179 474 KLNPDDL 480 (589)
Q Consensus 474 ~~~p~~~ 480 (589)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777644
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.4e-12 Score=130.18 Aligned_cols=270 Identities=11% Similarity=0.018 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CCeeh
Q 048179 178 VVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLD---VKVQTSLVDMYAKTGHLDLASHVFKNMSR---------INIVT 245 (589)
Q Consensus 178 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~ 245 (589)
..+..+...+...|+++.|...++.+++...... ..++..+...|...|++++|...|++..+ ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455566778899999999999999999854321 15788899999999999999999987643 12356
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh
Q 048179 246 WGALISGFAQNGLAGSTLELLMEMQSCGFE-PDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK 324 (589)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (589)
+..+...|...|++++|+..|.+..+.... .+.. ....++..+...|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL------------------------------SEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH------------------------------HHHHHHHHHHHHHHH
Confidence 778888999999999999999887653100 0100 011222344444444
Q ss_pred cCC-----------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC
Q 048179 325 CGV-----------------PSCARALFDQMQS-----R----DLISWNVIIASYGIHGHGEEALSLFLQMIETMVK-PD 377 (589)
Q Consensus 325 ~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~ 377 (589)
.|+ +++|...|++..+ . ...+|..+...+...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 455 5555555444321 1 1246777778888888888888888887653211 12
Q ss_pred ----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC
Q 048179 378 ----HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMVDLLARAGEVEEALKIVDSMST----EPG 445 (589)
Q Consensus 378 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~ 445 (589)
..++..+...+...|++++|...++++.....-..+ ...+..+..+|...|++++|.+.+++... .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 236777888899999999999999887754211111 45677888999999999999999987632 112
Q ss_pred ----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 446 ----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 446 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
..++..+...+...|++++|.+.+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34777888899999999999999999998876
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=2.2e-12 Score=124.47 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----h
Q 048179 344 ISWNVIIASYGIHGHGEEALSLFLQMIETMV-KPD----HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----E 414 (589)
Q Consensus 344 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 414 (589)
..+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..+++.......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3566677777788888888888877664311 111 236677777888889999998888887653211122 4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 415 KHYACMVDLLARAGEVEEALKIVDSMST----EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
..+..+...+...|++++|...+++... .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5677788889999999999998887621 112 446778888899999999999999999988764
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=6.9e-12 Score=113.87 Aligned_cols=165 Identities=8% Similarity=-0.029 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 343 LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|...|+...+. .+.+...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34455555555566666666666666555543245555555555566666666666666665532 1122445555666
Q ss_pred HHHHcCCHHHHHHHHHhcC-CCCC-h-------hHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CchhHHHHHHHHH
Q 048179 423 LLARAGEVEEALKIVDSMS-TEPG-L-------AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD--DLGIHALVSNFFA 491 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~-~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 491 (589)
+|...|++++|++.+++.. ..|+ . .+|..+...+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 6666666666666665542 1222 2 23555555566666666666666666666666 5666666666666
Q ss_pred hCCCh---------------------------HHHHHHHHHHHhC
Q 048179 492 MEQKW---------------------------EEVAGVRKTMRKS 509 (589)
Q Consensus 492 ~~g~~---------------------------~~a~~~~~~m~~~ 509 (589)
..|+. ++|...+++..+.
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65555 8899999888763
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=4.3e-12 Score=133.76 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 048179 343 LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMV 421 (589)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 421 (589)
..+|+.+...|.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|+..|+++.+. .|+ ...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4578888888899999999999999988863 234678888999999999999999999998863 354 77889999
Q ss_pred HHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHH
Q 048179 422 DLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEV 499 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 499 (589)
.+|.+.|++++|++.|++.. ..| +..+|..+..++...|++++|++.++++++++|+++.++..++.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998863 345 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 048179 500 AGVRKTMRK 508 (589)
Q Consensus 500 ~~~~~~m~~ 508 (589)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=7.4e-12 Score=123.61 Aligned_cols=195 Identities=10% Similarity=0.057 Sum_probs=137.6
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQS-----RD-----LISWNVIIASYGIHGHGEEALSLFLQMIETMVK-PD---- 377 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~---- 377 (589)
.++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|+..|++..+.... ++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3445566666666666666666665432 11 246777778888888888888888877653111 11
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC------CCC-h
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKY---KI-QPTEKHYACMVDLLARAGEVEEALKIVDSMST------EPG-L 446 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~p~-~ 446 (589)
..++..+..++...|++++|..+|++..+.. +. +....++..+..+|.+.|++++|.+.+++... .|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2367778888889999999999988877521 12 22256678888899999999999998887521 121 2
Q ss_pred hHHHHHHHHHHhcCC---chHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 447 AVWVALLSGCHNHKK---FSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..+..+...+...|+ +++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234566677888888 77777777776 33455667888899999999999999999998875
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.7e-11 Score=121.00 Aligned_cols=231 Identities=10% Similarity=-0.003 Sum_probs=159.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----eehHHHHHHHHHhCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHH
Q 048179 218 LVDMYAKTGHLDLASHVFKNMSR-----IN----IVTWGALISGFAQNGLAGSTLELLMEMQSCGFE-PDSVSLVSALLA 287 (589)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~ 287 (589)
....+...|++++|...|++..+ ++ ..+|..+...|...|++++|+..+.+..+.-.. ++..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-------- 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence 44555666777777776666543 11 235566666666777777777666665542100 1000
Q ss_pred HhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC
Q 048179 288 CAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----RD----LISWNVIIASYGIHGH 358 (589)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 358 (589)
+....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|+
T Consensus 181 ---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 181 ---------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 00123446667777777888888777776643 11 1467888889999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC-
Q 048179 359 GEEALSLFLQMIET----MVKP-DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT---EKHYACMVDLLARAGE- 429 (589)
Q Consensus 359 ~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~- 429 (589)
+++|+..|++..+. +..| ...++..+..++...|++++|..++++..+...-.++ ...+..+...|...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 99999999988762 3323 3567888999999999999999999987754211122 2335678888889999
Q ss_pred --HHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 430 --VEEALKIVDSMSTEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 430 --~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
+++|+.++++....|+ ...+..+...|...|++++|...+++++++..
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999865443 44677788899999999999999999987643
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=2.9e-11 Score=115.29 Aligned_cols=213 Identities=10% Similarity=0.018 Sum_probs=174.5
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHhHh-------cCCH-------HHHHHHHHhcCC---C-ChhHHHHHHHHHHhc
Q 048179 295 KLGKSIHGYTVRRFDFNLVLGTSVIDMYSK-------CGVP-------SCARALFDQMQS---R-DLISWNVIIASYGIH 356 (589)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 356 (589)
+.|..+++.+....+.++.+|..++..+.. .|++ ++|..+|++..+ | +...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567778888887778889999988888764 5886 899999998754 3 456899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-HcCCHHHH
Q 048179 357 GHGEEALSLFLQMIETMVKPD-HS-TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLA-RAGEVEEA 433 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 433 (589)
|++++|..+|++.++. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999984 554 33 7888889999999999999999999863 2334555554444433 36999999
Q ss_pred HHHHHhcCC-CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhcc---CCC-CchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 434 LKIVDSMST-EP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKL---NPD-DLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 434 ~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.++|++... .| +...|..++..+...|++++|+.+|+++++. .|+ +...|..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998732 23 6778999999999999999999999999985 553 67789999999999999999999999998
Q ss_pred hCCC
Q 048179 508 KSGM 511 (589)
Q Consensus 508 ~~g~ 511 (589)
+..+
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 7554
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.1e-11 Score=108.13 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLL 424 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 424 (589)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34445555666666666666666655432 234556666666667777777777777776653 233456667777777
Q ss_pred HHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHH
Q 048179 425 ARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
...|++++|.+.++++.. +.+...+..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776522 245667788888888999999999999999999998999999999999999999999999
Q ss_pred HHHHHhC
Q 048179 503 RKTMRKS 509 (589)
Q Consensus 503 ~~~m~~~ 509 (589)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9888764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.6e-12 Score=122.58 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----C-CC
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIET------MVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKY-----K-IQ 411 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~ 411 (589)
++..+...|...|++++|+..|+++.+. +..|+ ...+..+...+...|++++|..+++.+.+.. + .+
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4445555555556666666555555443 11222 3355566666677777777777777665431 0 11
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----------CCC-------hhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 412 PTEKHYACMVDLLARAGEVEEALKIVDSMST----------EPG-------LAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
.....+..+..+|.+.|++++|.+.++++.. .+. ...+..+...+...+.+.++...++++..
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 1134566677777777777777777766521 111 11222233334556677778888888888
Q ss_pred cCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 475 LNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888899999999999999999999999998765
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.3e-11 Score=125.05 Aligned_cols=179 Identities=9% Similarity=0.018 Sum_probs=156.8
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048179 328 PSCARALFDQMQS---RDLISWNVIIASYGIHGHG-EEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDL 403 (589)
Q Consensus 328 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 403 (589)
++++...++.... .+...|..+...+...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 4667889999999999999 99999999999874 33577899999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhc--------CCchH
Q 048179 404 MVSKYKIQPTEKHYACMVDLLARA---------GEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNH--------KKFSI 464 (589)
Q Consensus 404 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--------~~~~~ 464 (589)
+.+ +.|+...+..+..+|... |++++|++.+++.. ..| +...|..+..++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 984 458888899999999999 99999999999973 234 578899999999988 99999
Q ss_pred HHHHHHHHhccCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 465 GEKVAKKVLKLNP---DDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 465 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
|+..++++++++| +++..|..++.+|...|++++|.+.++++.+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999998743
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=8.3e-11 Score=115.79 Aligned_cols=195 Identities=13% Similarity=0.047 Sum_probs=136.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-C
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQS-----RD-----LISWNVIIASYGIHGHGEEALSLFLQMIET----MVKP-D 377 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~ 377 (589)
.++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. +-.+ .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3456666777777777777776665532 11 346777888888889999998888887653 1111 1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC----C--CCC-hh
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKY---KIQPTEKHYACMVDLLARAGEVEEALKIVDSMS----T--EPG-LA 447 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~-~~ 447 (589)
..++..+..++...|++++|..+|++..+.. +.+....++..+..+|.+.|++++|.+.+++.. . .|. ..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2467778888889999999999998887621 112226677888899999999999999988752 1 122 22
Q ss_pred HHHHHHHHHHhcCC---chHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 448 VWVALLSGCHNHKK---FSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 448 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+..+...+...++ +++|...+++. ...|.....+..++.+|...|++++|.+.++++.+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555555777777 77777777763 23344556778899999999999999999988764
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=1.1e-09 Score=107.62 Aligned_cols=194 Identities=11% Similarity=0.025 Sum_probs=136.4
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHH
Q 048179 315 GTSVIDMYSKCGVPSCARALFDQMQS-------R----DLISWNVIIASYGIHGHGEEALSLFLQMIETMVK--P--DHS 379 (589)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~ 379 (589)
...+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 35566667777787777777766542 1 1234566777888889999999999888764321 1 134
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH-----HHHHHHHHcCCHHHHHHHHHhcCC-CCC-----hhH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYA-----CMVDLLARAGEVEEALKIVDSMST-EPG-----LAV 448 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~-~p~-----~~~ 448 (589)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++... .|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 667777888889999999999998875422111111222 233457789999999999988743 121 224
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCC------CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNPD------DLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+..+...+...|++++|...++++++..+. ....+..++.+|...|++++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567778889999999999999998865432 124677789999999999999999988765
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=6.2e-11 Score=107.51 Aligned_cols=204 Identities=9% Similarity=0.028 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHhhcCC-CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHH
Q 048179 277 DSVSLVSALLACAQIGFLKLGKSIHGYTVRRFD-FNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-DLISWNVIIAS 352 (589)
Q Consensus 277 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 352 (589)
|+..+......+...|+++.|...+..+....+ ++...+..+..+|...|++++|...|++..+ | +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 445566666666666777777777776664333 5555555566666666777777666666543 2 33456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHH
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPDH-------STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT---EKHYACMVD 422 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 422 (589)
|...|++++|+..|++..+.. +.+. ..+..+...+...|++++|...|+.+.+ +.|+ ...+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 666677777776666666542 2223 3355555566666666666666666653 2333 345555555
Q ss_pred HHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 423 LLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
+|...|+. .++++.. ..+...+.... ....+++++|...++++++++|+++.+...++.+..
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 55544432 1222211 11222222222 233455699999999999999999988888877643
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.1e-10 Score=101.68 Aligned_cols=167 Identities=13% Similarity=-0.060 Sum_probs=143.7
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048179 313 VLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALS 389 (589)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~ 389 (589)
..+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456778889999999999999999875 356788889999999999999999999998874 446778888899999
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHH
Q 048179 390 HSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEK 467 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~ 467 (589)
..|++++|.++++.+.+. .+.+...+..+..++...|++++|.+.++++.. +.+..++..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 345678888999999999999999999998732 3457788999999999999999999
Q ss_pred HHHHHhccCCCCchh
Q 048179 468 VAKKVLKLNPDDLGI 482 (589)
Q Consensus 468 ~~~~~~~~~p~~~~~ 482 (589)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999877644
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=6.1e-10 Score=109.55 Aligned_cols=226 Identities=10% Similarity=0.017 Sum_probs=154.7
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhccCchhhHHHHHHHHh---hcCCC----ChhHHHHH
Q 048179 251 SGFAQNGLAGSTLELLMEMQSCGF-EPD----SVSLVSALLACAQIGFLKLGKSIHGYTV---RRFDF----NLVLGTSV 318 (589)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~----~~~~~~~l 318 (589)
..+...|++++|+..|++..+... .++ ..++..+...+...|+.+.|...+..+. ..... ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666665544210 111 2344455555566666666666665555 11111 23456777
Q ss_pred HHHhHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQS-----RD----LISWNVIIASYGIHGHGEEALSLFLQMIET----MVKPDHSTFASLL 385 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~ll 385 (589)
...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 8888888888888888876653 22 246777888999999999999999988761 2233356788889
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC---HHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPT---EKHYACMVDLLARAGE---VEEALKIVDSMSTEPG-LAVWVALLSGCHN 458 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~ 458 (589)
..+.+.|++++|..++++..+...-.++ ...+..+...+...|+ +++|+..+++....|+ ...+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999998875332222 3345666777778888 8999999998654443 3456678888999
Q ss_pred cCCchHHHHHHHHHhccC
Q 048179 459 HKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 459 ~~~~~~a~~~~~~~~~~~ 476 (589)
.|++++|...++++++..
T Consensus 349 ~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998653
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=6.2e-10 Score=103.20 Aligned_cols=205 Identities=8% Similarity=-0.005 Sum_probs=130.0
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHH
Q 048179 310 FNLVLGTSVIDMYSKCGVPSCARALFDQMQS--R-D---LISWNVIIASYGIHGHGEEALSLFLQMIETMV-KPD-HSTF 381 (589)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~t~ 381 (589)
.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++.++... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455555666666666677777766666653 2 2 34555566666666666666666666666421 112 2344
Q ss_pred HHHHHHHhc--------CCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHH
Q 048179 382 ASLLSALSH--------SGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVAL 452 (589)
Q Consensus 382 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 452 (589)
..+..++.. .|++++|...|+.+.+.+ |+ ......+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 455555555 666666666666666542 22 22222211111111000 1124667
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCC---chhHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCccCCceeE
Q 048179 453 LSGCHNHKKFSIGEKVAKKVLKLNPDD---LGIHALVSNFFAME----------QKWEEVAGVRKTMRKSGMKKVPGYSV 519 (589)
Q Consensus 453 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~ 519 (589)
...+...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++.+..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 788999999999999999999999984 45889999999977 999999999999886432
Q ss_pred EEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 048179 520 VEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMRA 555 (589)
Q Consensus 520 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 555 (589)
.+|...+....+..+...+++
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 245566777777777777764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.7e-10 Score=106.73 Aligned_cols=220 Identities=13% Similarity=0.124 Sum_probs=157.3
Q ss_pred hccCchhhHHHHHHHHhh--------cCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----------CChhHHHHH
Q 048179 289 AQIGFLKLGKSIHGYTVR--------RFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----------RDLISWNVI 349 (589)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 349 (589)
...|+++.|...++.... ..+....++..+...|...|++++|...|+++.+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888888777762 2233567788899999999999999999987652 123578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----C-CCCChhh
Q 048179 350 IASYGIHGHGEEALSLFLQMIET------MVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKY-----K-IQPTEKH 416 (589)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~ 416 (589)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. + .+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11232 4578888899999999999999999987641 0 1122567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCC----------CC-ChhHHHHHHHHHHhcCC------chHHHHHHHHHhccCCCC
Q 048179 417 YACMVDLLARAGEVEEALKIVDSMST----------EP-GLAVWVALLSGCHNHKK------FSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------~p-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 479 (589)
+..+..+|.+.|++++|.+.++++.. .+ ....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88899999999999999999987621 22 23344444444444333 333333344443445667
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 480 LGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78899999999999999999999998875
No 84
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=5.6e-11 Score=113.29 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=22.9
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
.+...+.+.++...++.... ..+.....+..+..+|.+.|++++|.+.+++.
T Consensus 253 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 253 KQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -----CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555555555655553 12223555666667777777777777666654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=2.6e-10 Score=120.22 Aligned_cols=165 Identities=11% Similarity=0.095 Sum_probs=142.2
Q ss_pred CCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048179 309 DFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLL 385 (589)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 385 (589)
|.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++.++.. +-+...+..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34567788999999999999999999998764 456889999999999999999999999999864 33467899999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHhcCCc
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSM-STEP-GLAVWVALLSGCHNHKKF 462 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 462 (589)
.++...|++++|++.|+++.+. .|+ ...|..+..+|.+.|++++|++.|++. ...| +...|..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999864 344 788999999999999999999999986 3355 567899999999999999
Q ss_pred hHHHHHHHHHhccCC
Q 048179 463 SIGEKVAKKVLKLNP 477 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p 477 (589)
++|++.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999987654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.6e-09 Score=102.23 Aligned_cols=215 Identities=9% Similarity=0.034 Sum_probs=127.6
Q ss_pred CHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCchhhHHHHH
Q 048179 227 HLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSC----GFEPD-SVSLVSALLACAQIGFLKLGKSIH 301 (589)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 301 (589)
++++|...|++. ...|...|++++|+..|.+..+. |-+++ ..++
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-------------------- 80 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY-------------------- 80 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH--------------------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH--------------------
Confidence 477777776654 45567788888888888776543 11111 2233
Q ss_pred HHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 048179 302 GYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS-----RD----LISWNVIIASYGIH-GHGEEALSLFLQMIE 371 (589)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 371 (589)
+.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+
T Consensus 81 --------------~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 81 --------------VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp --------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3344444444444444444443321 11 23566677777775 888888888887765
Q ss_pred cCCCC-C----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 372 TMVKP-D----HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTE-----KHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 372 ~~~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
..... + ..++..+...+...|++++|..+|+.+.+...-.+.. ..|..+..++...|++++|...+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32110 1 2456777788888888888888888877642111111 145667777888888888888888763
Q ss_pred C-CCChh------HHHHHHHHHH--hcCCchHHHHHHHHHhccCCCCchhHHHH
Q 048179 442 T-EPGLA------VWVALLSGCH--NHKKFSIGEKVAKKVLKLNPDDLGIHALV 486 (589)
Q Consensus 442 ~-~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 486 (589)
. .|+.. .+..++.++. ..+++++|+..++++.+++|.+...+..+
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2 34321 2344555554 44667888888888888877655444443
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=3.2e-09 Score=95.85 Aligned_cols=183 Identities=11% Similarity=-0.029 Sum_probs=112.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHH
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQS--RD----LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH--STFAS 383 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ 383 (589)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34445556666777777777777776653 22 135666666777777777777777777665321111 13333
Q ss_pred HHHHHhc------------------CCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCCCC
Q 048179 384 LLSALSH------------------SGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMSTEP 444 (589)
Q Consensus 384 ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 444 (589)
+..++.. .|++++|...|+.+.+.+ |+ ...+.+...+. ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----HHHHHH----------
Confidence 3333332 345555555555555321 22 11221111100 000000
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL---GIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+++
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999876 57999999999999999999999999876654
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=2.5e-08 Score=97.76 Aligned_cols=121 Identities=10% Similarity=-0.139 Sum_probs=57.8
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCChh----hHHHHHHHHHccCCcHHHHHHHHHHHHhcCC-Cc----hHHHHHHHHH
Q 048179 151 GLVFNGQPREAVDAYKRMKKEGIDADEV----VMMGLIQACADLGDSRFGLSVHGYSIRRHLN-LD----VKVQTSLVDM 221 (589)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~ 221 (589)
.+...|++++|...+++........+.. ++..+...+...|+++.|...+......... .+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666666555432111111 2333334445555666665555555442110 11 1223445555
Q ss_pred HHhcCCHHHHHHHHhhcCC-------C----CeehHHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 222 YAKTGHLDLASHVFKNMSR-------I----NIVTWGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 222 ~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
+...|++++|...+++..+ + ....+..+...+...|++++|...+.+...
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5666666666655554421 1 012334455555666666666666665544
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=1.3e-09 Score=102.82 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhc--cCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 048179 261 STLELLMEMQSCGFEPDSVSLVSALLACAQ--IGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQM 338 (589)
Q Consensus 261 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 338 (589)
+|.+++.+..+. .++....+ .++ .. .++++.|...+..+ ...|...|++++|...|.+.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 466666666654 23322122 222 21 12467776666544 55678889999999988876
Q ss_pred CC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcC-CcHHHHHHHHHH
Q 048179 339 QS-----RD----LISWNVIIASYGIHGHGEEALSLFLQMIETMV---KPD--HSTFASLLSALSHS-GLVEEGRYWFDL 403 (589)
Q Consensus 339 ~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~ 403 (589)
.+ .+ ..+|+.+...|...|++++|+..|++..+... .+. ..++..+...+... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 53 12 45788999999999999999999998876321 111 34788888999996 999999999999
Q ss_pred HHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC---h-----hHHHHHHHHHHhcCCchHHHHHHH
Q 048179 404 MVSKYKIQPT----EKHYACMVDLLARAGEVEEALKIVDSMS-TEPG---L-----AVWVALLSGCHNHKKFSIGEKVAK 470 (589)
Q Consensus 404 ~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~-----~~~~~l~~~~~~~~~~~~a~~~~~ 470 (589)
..+.+.-..+ ..++..+...|.+.|++++|+..|++.. ..|+ . ..|..++.++...|+++.|+..++
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8864211111 3568889999999999999999999863 2222 1 156778888999999999999999
Q ss_pred HHhccCCCCchh-----HHHHHHHHH--hCCChHHHHHHHHHHH
Q 048179 471 KVLKLNPDDLGI-----HALVSNFFA--MEQKWEEVAGVRKTMR 507 (589)
Q Consensus 471 ~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~ 507 (589)
++++++|+.... +..++..|. ..+++++|.+.++++.
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 999999976543 344566665 4678999998887654
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=1e-10 Score=98.11 Aligned_cols=141 Identities=8% Similarity=-0.005 Sum_probs=105.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 351 ASYGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++.+. -+-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3444566777777777765442 333 335566777788888888888888888753 23347778888888888888
Q ss_pred HHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHH-HHHHhccCCCCchhHHHHHHHHHhCCC
Q 048179 430 VEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKV-AKKVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 430 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
+++|+..|++.. ..| +..+|..+...+...|++++|.+. ++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888763 345 567888888889999998776655 589999999999999999999888875
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.5e-09 Score=100.59 Aligned_cols=203 Identities=10% Similarity=0.015 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCC---hhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CC----hhHH
Q 048179 276 PDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFN---LVLGTSVIDMYSKCGVPSCARALFDQMQS--RD----LISW 346 (589)
Q Consensus 276 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~ 346 (589)
.+...+......+...|+++.|...++.+....|.+ ...+..+..+|.+.|++++|...|+++.+ |+ ..++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 455677777888899999999999999999666666 77888999999999999999999998864 31 3467
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH
Q 048179 347 NVIIASYGI--------HGHGEEALSLFLQMIETMVKPDH-STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHY 417 (589)
Q Consensus 347 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 417 (589)
..+..++.. .|++++|+..|++.++.. |+. ..... ...+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 777888888 999999999999999863 432 22211 1111111111 01235
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCC-CCC----hhHHHHHHHHHHhc----------CCchHHHHHHHHHhccCCCCch-
Q 048179 418 ACMVDLLARAGEVEEALKIVDSMST-EPG----LAVWVALLSGCHNH----------KKFSIGEKVAKKVLKLNPDDLG- 481 (589)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~- 481 (589)
..+...|.+.|++++|+..|+++.. .|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 5678888999999999999888632 343 34677777777765 8899999999999999999864
Q ss_pred --hHHHHHHHHHhCCChHHH
Q 048179 482 --IHALVSNFFAMEQKWEEV 499 (589)
Q Consensus 482 --~~~~l~~~~~~~g~~~~a 499 (589)
+...+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 445556666665555443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=6.2e-09 Score=96.23 Aligned_cols=138 Identities=7% Similarity=-0.158 Sum_probs=63.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCee-hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHH
Q 048179 220 DMYAKTGHLDLASHVFKNMSRINIV-TWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGK 298 (589)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 298 (589)
.-.+-.|.+..++.-..++...+.. .-.-+.++|...|+++.. ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 3445568888887766555432222 222244677777776642 11233332332222222 111 34
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 299 SIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSR-----DLISWNVIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
..++......+++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444211233333344555555555555555555544221 223444445555555555555555555544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=8.3e-10 Score=117.03 Aligned_cols=169 Identities=8% Similarity=-0.063 Sum_probs=136.3
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 048179 323 SKCGVPSCARALFDQMQ--------S---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHS 391 (589)
Q Consensus 323 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~ 391 (589)
...|++++|.+.|++.. + .+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788999999888775 2 456778888888999999999999999988763 33566788888888999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHH
Q 048179 392 GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVA 469 (589)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 469 (589)
|++++|...|+++.+. -+.+...+..+..+|.+.|++++ ++.|++.. ..| +...|..+..++...|++++|++.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998863 23347788889999999999999 88888863 244 5678888889999999999999999
Q ss_pred HHHhccCCCCchhHHHHHHHHHhCCC
Q 048179 470 KKVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 470 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
+++++++|+++.++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877665
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=1.4e-09 Score=88.82 Aligned_cols=126 Identities=12% Similarity=0.162 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhc
Q 048179 382 ASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNH 459 (589)
Q Consensus 382 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~ 459 (589)
..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.++++.. +.+...|..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34444455555555555555555442 122344555556666666666666666665421 23455667777778888
Q ss_pred CCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 460 KKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 460 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888888888887653
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=2.5e-08 Score=92.21 Aligned_cols=240 Identities=8% Similarity=0.014 Sum_probs=153.8
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHH
Q 048179 251 SGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSC 330 (589)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (589)
.-..-.|++..++.-...+.. ........-+.+++...|..... ..-.|.......+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la-~~~~~~---- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYV-QFLDTK---- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHH-HHHTTT----
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHH-HHhccc----
Confidence 334557888877763333221 12223333445666666655431 11222222333333 333322
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 048179 331 ARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKP-DHSTFASLLSALSHSGLVEEGRYWFDLMVS 406 (589)
Q Consensus 331 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 406 (589)
|...|++... ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777776653 445556677778888899999999888876655322 345677778888888999999999988875
Q ss_pred hcCCCC-----ChhhHHHHHHH--HHHcC--CHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhcc-
Q 048179 407 KYKIQP-----TEKHYACMVDL--LARAG--EVEEALKIVDSMSTE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKL- 475 (589)
Q Consensus 407 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 475 (589)
. .| +..+...|..+ ....| +..+|..+|+++..+ |+..+-..+++++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23444445544 33334 888999999888544 55334445555788889999999998887776
Q ss_pred ---------CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 476 ---------NPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 476 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
+|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 48888888888888888887 88888888887543
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=2.8e-10 Score=95.41 Aligned_cols=122 Identities=12% Similarity=-0.024 Sum_probs=102.4
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcC
Q 048179 384 LLSALSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHK 460 (589)
Q Consensus 384 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 460 (589)
|...+...|++++|+..++.... ..|+ ...+..+..+|.+.|++++|++.|++.. ..| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556777899999999998764 3444 5566789999999999999999999973 344 6778999999999999
Q ss_pred CchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHH-HHHHHh
Q 048179 461 KFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGV-RKTMRK 508 (589)
Q Consensus 461 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 508 (589)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577765
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=4.2e-09 Score=98.97 Aligned_cols=174 Identities=11% Similarity=0.016 Sum_probs=136.4
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 048179 330 CARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYK 409 (589)
Q Consensus 330 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 409 (589)
.....+......+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 34444444444445566777788889999999999999988864 335667888888999999999999999988743
Q ss_pred CCCChhhHH-HHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--chhHH
Q 048179 410 IQPTEKHYA-CMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD--LGIHA 484 (589)
Q Consensus 410 ~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 484 (589)
.|+..... .....+.+.++.++|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|++ ..++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 45543332 23334667788888888888763 244 57788999999999999999999999999999988 88999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 048179 485 LVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 485 ~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998887754
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=5.4e-09 Score=85.30 Aligned_cols=131 Identities=15% Similarity=0.246 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLL 424 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 424 (589)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++.+... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56677778888888888888888887764 345667777788888888999999988888764 234566778888888
Q ss_pred HHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 425 ARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
...|++++|.+.++++.. +.+..++..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999988888632 235677888888899999999999999999988885
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.1e-08 Score=91.20 Aligned_cols=172 Identities=10% Similarity=0.019 Sum_probs=139.1
Q ss_pred HHHHHHhcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----cHHHHHHHHHHHH
Q 048179 331 ARALFDQMQS-RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSG----LVEEGRYWFDLMV 405 (589)
Q Consensus 331 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 405 (589)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544432 566778888888888899999999999988865 45666777777777 6 8999999999987
Q ss_pred HhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHhcCCCCC----hhHHHHHHHHHHh----cCCchHHHHHHHHHh
Q 048179 406 SKYKIQPTEKHYACMVDLLAR----AGEVEEALKIVDSMSTEPG----LAVWVALLSGCHN----HKKFSIGEKVAKKVL 473 (589)
Q Consensus 406 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 473 (589)
+. .+...+..|..+|.. .+++++|+++|++.....+ ..++..|...|.. .+|+++|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 63 356778888888887 8899999999999865433 7888899998888 889999999999999
Q ss_pred ccCCCCchhHHHHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 048179 474 KLNPDDLGIHALVSNFFAME-Q-----KWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 474 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 511 (589)
+. |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66788999999999864 3 89999999999988664
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=1.6e-09 Score=90.31 Aligned_cols=102 Identities=9% Similarity=-0.011 Sum_probs=90.1
Q ss_pred CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 409 KIQPT-EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 409 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
.+.|+ ...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 5677788899999999999999999873 244 67789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 486 VSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 486 l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998744
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=6.8e-09 Score=97.07 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=104.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQS-------R----DLISWNVIIASYGIHGHGEEALSLFLQMIET------MV 374 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~ 374 (589)
..++..+...|...|++++|...|++..+ + ...++..+...|...|++++|+..|++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455666666667777777666665532 1 2346777788888888888888888888764 11
Q ss_pred CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc------CCCCC-hhhHHHHHHHHHHcC------CHHHHHHHHHhc
Q 048179 375 KPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKY------KIQPT-EKHYACMVDLLARAG------EVEEALKIVDSM 440 (589)
Q Consensus 375 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~ 440 (589)
.|+ ..++..+..++...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 232 4577788888999999999999998887531 11222 333444444443333 344455555554
Q ss_pred CCC-C-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 441 STE-P-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 441 ~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
... | ...++..+...+...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 432 3 34578888899999999999999999998753
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=3.3e-09 Score=85.68 Aligned_cols=95 Identities=6% Similarity=0.089 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...+......|.+.|++++|++.|++.. ..| +..+|..+..++...|++++|+..++++++++|+++.+|..+|.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3445556666667777777777666642 223 45566667777777777777777777777777777777777777777
Q ss_pred hCCChHHHHHHHHHHHh
Q 048179 492 MEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~ 508 (589)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777777776665
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=2.7e-09 Score=92.20 Aligned_cols=156 Identities=10% Similarity=0.077 Sum_probs=94.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHHc
Q 048179 349 IIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDL-LARA 427 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 427 (589)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|+.+.+. .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344455555555555555544431 223344555555555555556555555555432 2222222211111 1111
Q ss_pred CCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--chhHHHHHHHHHhCCChHHHHHHH
Q 048179 428 GEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD--LGIHALVSNFFAMEQKWEEVAGVR 503 (589)
Q Consensus 428 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 503 (589)
+...+|...+++.. ..| +...+..+..++...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 22233555565542 234 46778888888999999999999999999998865 558889999999999999999888
Q ss_pred HHHHh
Q 048179 504 KTMRK 508 (589)
Q Consensus 504 ~~m~~ 508 (589)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=5.1e-09 Score=108.98 Aligned_cols=160 Identities=10% Similarity=0.011 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 048179 325 CGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWF 401 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 401 (589)
.|++++|.+.|++..+ .+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356789999999999999999999999998863 335678889999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhc---CCchHHHHHHHHHhccC
Q 048179 402 DLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNH---KKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 402 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 476 (589)
+++.+. .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+..++... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 23447788999999999999999999999873 234 567888899999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 048179 477 PDDLGIHALVS 487 (589)
Q Consensus 477 p~~~~~~~~l~ 487 (589)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99998888776
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=1.6e-09 Score=90.50 Aligned_cols=97 Identities=5% Similarity=-0.011 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...+..+...+.+.|++++|...|++.. ..| +...|..+..+|...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5667778889999999999999998863 234 67789999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 048179 492 MEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~~g 510 (589)
..|++++|.+.+++..+..
T Consensus 101 ~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 9999999999999987643
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.1e-08 Score=90.94 Aligned_cols=158 Identities=8% Similarity=0.023 Sum_probs=114.3
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCC---ChhHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSR---DLISWNV----------------IIASYGIHGHGEEALSLFLQMIETMVKPDHS 379 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 379 (589)
...+...|++++|...|++..+. +...|.. +..+|...|++++|+..|++.++.. +-+..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 34455566666666666665431 2234444 8888999999999999999998864 34567
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHhcCC-CCChhHHHHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE--VEEALKIVDSMST-EPGLAVWVALLSGC 456 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~-~p~~~~~~~l~~~~ 456 (589)
.+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|+ .+.+...++.... .|....+..+..++
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 8888999999999999999999999864 23347788888888876654 4455666666543 23334555666777
Q ss_pred HhcCCchHHHHHHHHHhccCCCC
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
...|++++|+..+++++++.|++
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCH
Confidence 88899999999999999999963
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=5.9e-07 Score=90.77 Aligned_cols=99 Identities=7% Similarity=0.000 Sum_probs=61.5
Q ss_pred CC-CchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC-hHHHH
Q 048179 54 KE-SPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGK-MNEAM 131 (589)
Q Consensus 54 ~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~ 131 (589)
.| +.+.|..+|+.+... -|. ++++.+..+|+..+.. .|++..|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377778888777654 233 7888888888888774 4688888888777766653 34455
Q ss_pred HHHHhcCC------CCcchHHHHHHHHH----hCCCccHHHHHHHHHHH
Q 048179 132 VAFEKMQR------KDLVCWSSMINGLV----FNGQPREAVDAYKRMKK 170 (589)
Q Consensus 132 ~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 170 (589)
.+|+.... .+...|...+..+. .+++.+.+.++|++.+.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 56655431 24456666666543 23556677778887776
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=3.5e-08 Score=104.57 Aligned_cols=191 Identities=11% Similarity=0.041 Sum_probs=149.2
Q ss_pred hccCchhhHHHHHHHHh--------hcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC
Q 048179 289 AQIGFLKLGKSIHGYTV--------RRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHG 357 (589)
Q Consensus 289 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 357 (589)
...|+.+.|...++.+. ...+.+...+..+...|...|++++|...|+++.+ .+...|..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 66778888888888777 55677788889999999999999999999998874 46788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 048179 358 HGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIV 437 (589)
Q Consensus 358 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (589)
++++|+..|++..+.. +-+...+..+..++...|++++ ...|+++.+. -+.+...|..+..+|.+.|++++|++.|
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999864 3356788889999999999999 9999999864 2334778999999999999999999999
Q ss_pred HhcC-CCCC-hhHHHHHHHHHHhcCC-----chHHHHHHHHHhccCCCCchhH
Q 048179 438 DSMS-TEPG-LAVWVALLSGCHNHKK-----FSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 438 ~~~~-~~p~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 9985 3565 5677788888766555 2344444455555555555443
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=1.6e-08 Score=81.52 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=95.0
Q ss_pred CCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHH
Q 048179 374 VKPDH-STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWV 450 (589)
Q Consensus 374 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~ 450 (589)
+.|+. ..+......+.+.|++++|++.|+++.+. -+.+...|..+..+|.+.|++++|++.+++.. .. .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 46677788888999999999999998863 23457888889999999999999999998863 23 4577899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
.+..++...|++++|++.++++++++|+++.++..|+.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999998888765
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=3.2e-08 Score=88.27 Aligned_cols=124 Identities=9% Similarity=-0.015 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-C-CCChhHHHHHHHHHHhc
Q 048179 382 ASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-T-EPGLAVWVALLSGCHNH 459 (589)
Q Consensus 382 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~ 459 (589)
..+...+...|++++|...|+.+. .|+...+..+..+|.+.|++++|++.+++.. . +.+...|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344445556666666666665542 3455566666666666666666666666642 1 23455667777777777
Q ss_pred CCchHHHHHHHHHhccCCCCc----------------hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 460 KKFSIGEKVAKKVLKLNPDDL----------------GIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 460 ~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
|++++|++.+++++++.|++. .++..++.+|...|++++|.+.++++.+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777777776665 778888888888888888888888777644
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=2.2e-08 Score=104.21 Aligned_cols=146 Identities=12% Similarity=-0.058 Sum_probs=67.2
Q ss_pred CchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048179 292 GFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQ 368 (589)
Q Consensus 292 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (589)
|+.+.|...++.+....+.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555555555544444455555555555555555555555555433 2334555555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHhc
Q 048179 369 MIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA---GEVEEALKIVDSM 440 (589)
Q Consensus 369 m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 440 (589)
..+.. +.+...+..+..++...|++++|.+.|+++.+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 83 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 83 ASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55542 223445555555555555555555555555542 122244455555555555 5555555555554
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=2e-08 Score=89.29 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=122.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHhcCCcHHHHHHHHHHHHHhc
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTFAS----------------LLSALSHSGLVEEGRYWFDLMVSKY 408 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~ 408 (589)
+-.....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|+.+.+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 344456678899999999999999886 344 445666 888999999999999999999874
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCC--chHHHHHHHHHhccCCCCchhHH
Q 048179 409 KIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKK--FSIGEKVAKKVLKLNPDDLGIHA 484 (589)
Q Consensus 409 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~ 484 (589)
-+.+...+..+..+|...|++++|++.|++.. ..| +..+|..+..++...|+ .+.+...++++....|. ...+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 23457889999999999999999999999973 345 57788888888766654 45556667666544332 23566
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 485 LVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 485 ~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
.++.++...|++++|...+++..+..
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 67888999999999999999988643
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=6.4e-08 Score=90.83 Aligned_cols=134 Identities=7% Similarity=-0.017 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCChhHHHHHH
Q 048179 375 KPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPGLAVWVALL 453 (589)
Q Consensus 375 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~ 453 (589)
+.+...+..+...+...|++++|...|+.+.+. -+.+...+..+..++.+.|++++|...++++.. .|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 344556777888899999999999999999864 234578889999999999999999999999854 57665444433
Q ss_pred H-HHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 454 S-GCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 454 ~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
. .+...++.+.|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3 37788899999999999999999999999999999999999999999999998744
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=5.6e-07 Score=84.11 Aligned_cols=191 Identities=10% Similarity=0.097 Sum_probs=119.7
Q ss_pred HHHHHHHhHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048179 315 GTSVIDMYSKCG--VPSCARALFDQMQS---RDLISWNVIIASY----GIH---GHGEEALSLFLQMIETMVKPDHSTFA 382 (589)
Q Consensus 315 ~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~ 382 (589)
++.-...+...| +++++++.++.+.. .+..+|+.-...+ ... +++++++.+++++.+.. +-|..++.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 333334444444 56666666665543 2344555443333 333 56777777777777654 33555665
Q ss_pred HHHHHHhcCCcHH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC------HHHHHHHHHhcC-CC-CChhHHHHH
Q 048179 383 SLLSALSHSGLVE--EGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE------VEEALKIVDSMS-TE-PGLAVWVAL 452 (589)
Q Consensus 383 ~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~-p~~~~~~~l 452 (589)
.-...+.+.|.++ +++++++.+.+. -+-|...|+.-..++.+.|+ ++++++.++++. .. -|...|+.+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 5555556666666 777777777763 23345556655556666665 777777777652 23 366777777
Q ss_pred HHHHHhcCCchH-HHHHHHHHhccC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 453 LSGCHNHKKFSI-GEKVAKKVLKLN---PDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 453 ~~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
...+...|+... .....+++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777776433 555677777665 77778888888888888888888888888764
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.87 E-value=1.8e-08 Score=83.35 Aligned_cols=96 Identities=7% Similarity=-0.022 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556677888889999999999998863 234 67788899999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048179 492 MEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~~ 509 (589)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988763
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=2.9e-07 Score=86.66 Aligned_cols=160 Identities=6% Similarity=-0.051 Sum_probs=122.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHH
Q 048179 349 IIASYGIHGHGEEALSLFLQMIETMV-KPDHS----TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYAC 419 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 419 (589)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+.+.....-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999998876421 22221 2334666777888999999999998873222233 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHhcC-------CC-CC-hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------chhHH
Q 048179 420 MVDLLARAGEVEEALKIVDSMS-------TE-PG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD------LGIHA 484 (589)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 484 (589)
+...|...|++++|...++++. .. +. ..++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988863 11 22 3478889999999999999999999999875432 67899
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHHh
Q 048179 485 LVSNFFAMEQK-WEEVAGVRKTMRK 508 (589)
Q Consensus 485 ~l~~~~~~~g~-~~~a~~~~~~m~~ 508 (589)
.+|.+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988764
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=7.4e-08 Score=91.43 Aligned_cols=219 Identities=10% Similarity=0.008 Sum_probs=155.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHH
Q 048179 256 NGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALF 335 (589)
Q Consensus 256 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 335 (589)
.|++++|.+++++..+.. +.. + +...++++.|...+.. ....|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~--------------a~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAK--------------AAVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHH
Confidence 567888999988876542 111 0 1114666776666543 356778889999998888
Q ss_pred HhcCC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcCCcHHHHHHHH
Q 048179 336 DQMQS-----RD----LISWNVIIASYGIHGHGEEALSLFLQMIETMV---KPD--HSTFASLLSALSHSGLVEEGRYWF 401 (589)
Q Consensus 336 ~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 401 (589)
.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 77653 12 34788888899999999999999998765311 122 3567788888888 9999999999
Q ss_pred HHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC----hhHHHHHHHHHHhcCCchHHHHHH
Q 048179 402 DLMVSKYKIQPT----EKHYACMVDLLARAGEVEEALKIVDSMST----EPG----LAVWVALLSGCHNHKKFSIGEKVA 469 (589)
Q Consensus 402 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~~~~~~a~~~~ 469 (589)
++....+.-..+ ...+..+..+|.+.|++++|++.|++... .++ ...+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998764211111 45788889999999999999999988632 122 225666777788889999999999
Q ss_pred HHHhccCCCCchh-----HHHHHHHHHhCCChHHHHH
Q 048179 470 KKVLKLNPDDLGI-----HALVSNFFAMEQKWEEVAG 501 (589)
Q Consensus 470 ~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 501 (589)
++++ ++|+.... ...++..+ ..|+.+.+.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999 99875432 34455555 5677766655
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=4.8e-08 Score=84.19 Aligned_cols=156 Identities=10% Similarity=-0.056 Sum_probs=117.9
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 048179 315 GTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSA-LSH 390 (589)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a-~~~ 390 (589)
...+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++..... |+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 45566778889999999999999875 466788889999999999999999999887653 344333222111 122
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCC---hhHHHHHHHHHHhcCCchHHH
Q 048179 391 SGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM-STEPG---LAVWVALLSGCHNHKKFSIGE 466 (589)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~ 466 (589)
.+...+|...++.+.+. .+.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233468888888763 2334788889999999999999999999986 34454 558899999999999999999
Q ss_pred HHHHHHhc
Q 048179 467 KVAKKVLK 474 (589)
Q Consensus 467 ~~~~~~~~ 474 (589)
..+++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=1.4e-06 Score=81.44 Aligned_cols=224 Identities=10% Similarity=-0.006 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccC--chhhHHHHHHHHhhcCCCChhHHHHHHHHh----Hhc---CCHH
Q 048179 260 GSTLELLMEMQSCGFEPDSV-SLVSALLACAQIG--FLKLGKSIHGYTVRRFDFNLVLGTSVIDMY----SKC---GVPS 329 (589)
Q Consensus 260 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 329 (589)
++|+.++.+++.. .|+.. .++.--.++...+ .++.+...++.+....|.+..+|+.-...+ .+. ++++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4555555555543 33332 2333333344444 555555555555554555555555444444 444 6788
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc------HHHHH
Q 048179 330 CARALFDQMQS---RDLISWNVIIASYGIHGHGE--EALSLFLQMIETMVKPDHSTFASLLSALSHSGL------VEEGR 398 (589)
Q Consensus 330 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~------~~~a~ 398 (589)
+++.+++.+.+ ++..+|+--.-.+...|+++ ++++.++++++..+ -|...+..-.....+.+. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 89998888864 56678888777778888888 99999999998763 456666666666666666 89999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH-HHHHHHhcCC-----CCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 048179 399 YWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEE-ALKIVDSMST-----EPGLAVWVALLSGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 399 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 472 (589)
++++.+... .+-|...|+.+..++.+.|+..+ +.++.++... ..+...+..+...+.+.|+.++|.++++++
T Consensus 207 ~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 207 NYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999998864 34568888888889999888555 5557766532 246778889999999999999999999999
Q ss_pred hc-cCCCCchhHHHHHH
Q 048179 473 LK-LNPDDLGIHALVSN 488 (589)
Q Consensus 473 ~~-~~p~~~~~~~~l~~ 488 (589)
.+ .+|-....|...+.
T Consensus 285 ~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHTTCGGGHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHh
Confidence 96 89998888876654
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=1e-07 Score=85.79 Aligned_cols=184 Identities=15% Similarity=0.081 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCC---hhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CCh----hHHHH
Q 048179 278 SVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFN---LVLGTSVIDMYSKCGVPSCARALFDQMQS--RDL----ISWNV 348 (589)
Q Consensus 278 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~ 348 (589)
...+......+...|+++.|...++.+....|.+ ...+..+..+|.+.|++++|...|+++.+ |+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777889999999999999999544433 45778889999999999999999999864 332 24555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 048179 349 IIASYGI------------------HGHGEEALSLFLQMIETMVKPDHS-TFASLLSALSHSGLVEEGRYWFDLMVSKYK 409 (589)
Q Consensus 349 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 409 (589)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555543 57899999999999875 34432 2211110 001111111
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CCCh----hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchh
Q 048179 410 IQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EPGL----AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGI 482 (589)
Q Consensus 410 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 482 (589)
.....+...|.+.|++++|+..|+++.. .|+. ..+..+..++...|++++|++.++++....|++...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1223567889999999999999998732 3442 468888899999999999999999999988877543
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.2e-08 Score=79.91 Aligned_cols=96 Identities=8% Similarity=0.011 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456677788888899999998888763 233 57788889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048179 492 MEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~~ 509 (589)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988763
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=1.4e-08 Score=95.00 Aligned_cols=192 Identities=9% Similarity=-0.084 Sum_probs=135.3
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSA 387 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a 387 (589)
+...+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445567778888889999999999987753 367788888899999999999999999888753 3346678888889
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHH
Q 048179 388 LSHSGLVEEGRYWFDLMVSKYKIQPT-EKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGE 466 (589)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 466 (589)
+...|++++|...|+.+.+.. |+ ...+...+....+..+...... .......++......+ ..+ ..|++++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 999999999999999887542 22 1122222222222221111111 2222333344443333 333 368999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 048179 467 KVAKKVLKLNPDDLGIHALVSNFFAME-QKWEEVAGVRKTMRKS 509 (589)
Q Consensus 467 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 509 (589)
+.++++++++|++......+..++.+. +++++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999888888888888876 7899999999988653
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=5.2e-08 Score=84.02 Aligned_cols=120 Identities=8% Similarity=0.083 Sum_probs=94.4
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-C-CChhHHHHHHHH-HHhcCCc--h
Q 048179 389 SHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-E-PGLAVWVALLSG-CHNHKKF--S 463 (589)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~-~~~~~~~--~ 463 (589)
...|++++|...++...+. .+.+...+..+..+|...|++++|...+++... . .+...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567788888888887763 234567788888888888888888888887632 2 356677788888 7788998 9
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 464 IGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 464 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999988744
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=6.8e-08 Score=82.08 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCH 457 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~ 457 (589)
.+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+++.. .. .+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677778888888888877753 23346677778888888888888888887752 23 35678888889999
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHH--HHhCCChHHHHHHHHHHHh
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNF--FAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 508 (589)
..|++++|...+++++++.|++...+..++.+ +...|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555444 8889999999999887653
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=3.1e-06 Score=85.51 Aligned_cols=350 Identities=12% Similarity=0.046 Sum_probs=186.6
Q ss_pred chHhHHHHhhhcCCChHHHHHHhccCC--CCCcccHHHHHHHHHcCCC-chhHHHHHHHHHHC-CCCC-CcccHHHHHHH
Q 048179 11 NSVGRIIALYGGKNDIVSARKLFEELP--LRGVDTYNSIIIAYSRKES-PFEVLGLYNQMIKE-DVRP-DSSTFTVALKA 85 (589)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~ 85 (589)
.+|...+..|.. |+++.+..+|+... .|++..|...+.-..+.++ .+....+|+..... |..| +...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 356666666665 78888888888754 4677788887776666553 45667777776653 4323 44566666655
Q ss_pred Hh----ccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh-------------CCChHHHHHHHHhcCC----CCcch
Q 048179 86 CV----SLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVK-------------CGKMNEAMVAFEKMQR----KDLVC 144 (589)
Q Consensus 86 ~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~----~~~~~ 144 (589)
+. ..++.+.++++|+.+++.....-...|......-.. .+.+..|..+++.+.. .+...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 235677888888888874211111122221111000 0122223333332221 13335
Q ss_pred HHHHHHHHHhCCC-------ccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHH
Q 048179 145 WSSMINGLVFNGQ-------PREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTS 217 (589)
Q Consensus 145 ~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (589)
|...+.--..++. .+.+..+|+++... .+-+...|...+.-+...|+.+.|..+++..+.. +.+...+..
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~ 251 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 5554443222211 23456677777664 2334566666666677778888888888888877 333333332
Q ss_pred HHHHHHhcCCHHHH-HHHHhhcC--C----------CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 048179 218 LVDMYAKTGHLDLA-SHVFKNMS--R----------INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSA 284 (589)
Q Consensus 218 l~~~~~~~g~~~~A-~~~~~~~~--~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 284 (589)
|....+.++. ..+.+... . .....|...+....+.+..+.|..+|.+. .. ...+...|...
T Consensus 252 ----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~ 325 (493)
T 2uy1_A 252 ----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYC 325 (493)
T ss_dssp ----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHH
T ss_pred ----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHH
Confidence 2221111111 11111110 0 01134555555555566677777777777 22 11233333222
Q ss_pred HHHHh-ccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 048179 285 LLACA-QIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEAL 363 (589)
Q Consensus 285 l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 363 (589)
...-. ..++.+.|+.+++......+.++..+...++...+.|+.+.|+.+|+++. .....|...+..-...|+.+.+.
T Consensus 326 A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 326 AFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHH
Confidence 21111 12357777777777775455555556666776677777777777777764 24556666666656667776666
Q ss_pred HHHHHHHH
Q 048179 364 SLFLQMIE 371 (589)
Q Consensus 364 ~~~~~m~~ 371 (589)
.+++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=1.7e-07 Score=88.30 Aligned_cols=164 Identities=5% Similarity=-0.082 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hh
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH-----STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EK 415 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 415 (589)
.+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...++.+.+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566778888999999988887765322111 22344556677888999999999988753211112 34
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcC----CCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC------Cc
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMS----TEPG-----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD------DL 480 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 480 (589)
.++.+...|...|++++|...++++. ..|+ ..++..+...|...|++++|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999998763 1222 257888999999999999999999999976532 25
Q ss_pred hhHHHHHHHHHhCCChHHH-HHHHHHHHh
Q 048179 481 GIHALVSNFFAMEQKWEEV-AGVRKTMRK 508 (589)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 508 (589)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777877654
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3.8e-07 Score=81.20 Aligned_cols=144 Identities=10% Similarity=-0.052 Sum_probs=79.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHH
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVE 395 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~ 395 (589)
..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3444555555555555555555555555555555555555555555555555555442 223444555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 048179 396 EGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 396 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
+|...|+.+.+...-.+... + ...| +...| ...+|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~-~-------~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID-Y-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE-C-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH-H-------HHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555543211000000 0 0000 01112 235778888889999999999999999999
Q ss_pred cCCCC
Q 048179 475 LNPDD 479 (589)
Q Consensus 475 ~~p~~ 479 (589)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99976
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=1.1e-07 Score=76.23 Aligned_cols=115 Identities=12% Similarity=0.176 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHH
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSG 455 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~ 455 (589)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++.. +.+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666667777777777777777777653 233466677777888888888888888777632 2356678888888
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCC
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQ 494 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 494 (589)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988888888877654
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=7.9e-08 Score=77.75 Aligned_cols=117 Identities=9% Similarity=0.021 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHH
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSG 455 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 455 (589)
...+..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666677777788888888888887763 23356677778888888888888888887763 233 46678888888
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCCh
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKW 496 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 496 (589)
+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988875
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=7.3e-08 Score=78.34 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-C-CChhHHHHHHHH
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-E-PGLAVWVALLSG 455 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~ 455 (589)
...+..+...+...|++++|...|+.+.+. .+.+...+..+..++...|++++|.+.+++... . .+...|..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345555666666666666666666666542 222455666666666667777777766666421 2 345677777778
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCC
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQK 495 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 495 (589)
+...|++++|++.++++++.+|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877654
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=6e-08 Score=92.10 Aligned_cols=196 Identities=9% Similarity=-0.029 Sum_probs=148.7
Q ss_pred cCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048179 291 IGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMI 370 (589)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 370 (589)
.|+++.|..+++......+.. .+...++++.|...|.+. ...|...|++++|...|.+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 467778888888776332221 111157888888887654 567888999999999999887
Q ss_pred HcC----CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 371 ETM----VKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 371 ~~~----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
+.. -.+. ..+|..+...|...|++++|...|++..+.+.-..+ ..++..+..+|.+ |++++|++.+++..
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 532 1111 347888889999999999999999988764311111 4567788899988 99999999998863
Q ss_pred C----CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc------hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 442 T----EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL------GIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 442 ~----~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
. ..+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 111 45788889999999999999999999998876543 367778889999999999999999887
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=5.9e-08 Score=93.28 Aligned_cols=94 Identities=9% Similarity=-0.021 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...|..+..+|.+.|++++|+..+++.. .. .+...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3578888899999999999999998863 23 367789999999999999999999999999999999999999999999
Q ss_pred hCCChHHH-HHHHHHHH
Q 048179 492 MEQKWEEV-AGVRKTMR 507 (589)
Q Consensus 492 ~~g~~~~a-~~~~~~m~ 507 (589)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 45666664
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=8.2e-07 Score=78.98 Aligned_cols=160 Identities=9% Similarity=-0.133 Sum_probs=127.7
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQS-RDLISWNVIIASYGIHG----HGEEALSLFLQMIETMVKPDHSTFASLL 385 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll 385 (589)
++..+..|..+|...+++++|...|++..+ .+..++..+...|.. + ++++|+..|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 455667778888888899999999888765 466777778777777 6 8999999999998765 566777777
Q ss_pred HHHhc----CCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHH----cCCHHHHHHHHHhcCCC-CChhHHHHHH
Q 048179 386 SALSH----SGLVEEGRYWFDLMVSKYKIQPT---EKHYACMVDLLAR----AGEVEEALKIVDSMSTE-PGLAVWVALL 453 (589)
Q Consensus 386 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-p~~~~~~~l~ 453 (589)
..+.. .+++++|..+|+...+. .|+ ...+..|..+|.. .+++++|..+|++.... ++...+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78877 88999999999998753 342 6788889999998 88999999999997443 5667788888
Q ss_pred HHHHhc-C-----CchHHHHHHHHHhccCC
Q 048179 454 SGCHNH-K-----KFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 454 ~~~~~~-~-----~~~~a~~~~~~~~~~~p 477 (589)
..|..- | |+++|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887643 3 89999999999988764
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.70 E-value=6.5e-08 Score=77.34 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
.+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45667788999999999999999873 244 6778999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 048179 494 QKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 494 g~~~~a~~~~~~m~~~g 510 (589)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=1.3e-07 Score=74.04 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=82.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcC-C-CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CchhHHHHHH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMS-T-EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPD--DLGIHALVSN 488 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 488 (589)
+...+..+...+.+.|++++|...+++.. . +.+...|..+...+...|++++|...++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 35667778888888888888888888763 2 235677888888899999999999999999999999 8999999999
Q ss_pred HHHhC-CChHHHHHHHHHHHhCCC
Q 048179 489 FFAME-QKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 489 ~~~~~-g~~~~a~~~~~~m~~~g~ 511 (589)
+|... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876544
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=1.3e-07 Score=86.34 Aligned_cols=180 Identities=8% Similarity=-0.037 Sum_probs=126.2
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 048179 324 KCGVPSCARALFDQMQS--R-DLISWNVI-------IASYGIHGHGEEALSLFLQMIETMVKPDH--------------- 378 (589)
Q Consensus 324 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------- 378 (589)
..++.+.|.+.|.++.. | ....|..+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777888888877764 3 34567766 3455555555555555554433 22221
Q ss_pred -------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCCh----h
Q 048179 379 -------STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGL----A 447 (589)
Q Consensus 379 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 447 (589)
.....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233456677889999999999887642 344335566677888999999999999876544433 3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccC--CC-CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVLKLN--PD-DLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...++++..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778888999999999999999997533 54 456788899999999999999999998886
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=2.6e-07 Score=84.28 Aligned_cols=136 Identities=9% Similarity=-0.087 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHH
Q 048179 347 NVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT--EKHYACMVDLL 424 (589)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 424 (589)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677788888888888777654 344434455555777888888888888755431 1 111 23566778888
Q ss_pred HHcCCHHHHHHHHHhcCCC---CC--hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHH
Q 048179 425 ARAGEVEEALKIVDSMSTE---PG--LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVS 487 (589)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 487 (589)
.+.|++++|++.|++.... |. ...+..+..++...|+.++|...|+++++.+|+ +.++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8999999999998887322 32 346777788889999999999999999999998 76666654
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=2.9e-07 Score=75.33 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=84.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 412 PTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
.+...+..+...+...|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 346777888888888888888888888752 233 567888889999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhCC
Q 048179 490 FAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 490 ~~~~g~~~~a~~~~~~m~~~g 510 (589)
|...|++++|...++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887643
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=1.2e-07 Score=78.88 Aligned_cols=106 Identities=10% Similarity=-0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHH
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSG 455 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 455 (589)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++.. ..| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345666777888889999999999888763 23457778888889999999999999998863 234 56788888999
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
+...|++++|+..+++++++.|+++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999999999999999999999988766443
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=1.9e-07 Score=79.36 Aligned_cols=95 Identities=5% Similarity=-0.055 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455566666667777777777666652 223 55667777777777777777777777777777777777777777777
Q ss_pred hCCChHHHHHHHHHHHh
Q 048179 492 MEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~ 508 (589)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777777665
No 141
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.62 E-value=2.8e-07 Score=78.05 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCE
Q 048179 446 LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGE 525 (589)
Q Consensus 446 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 525 (589)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 4578888889999999999999999999999999999999999999999999999999998863
Q ss_pred EEEEEecCCCCCChH-HHHHHHHHHHHHHHh
Q 048179 526 LHAFIMEDKSHNQYE-DIVYVLKKLYLEMRA 555 (589)
Q Consensus 526 ~~~f~~~~~~~~~~~-~~~~~~~~l~~~~~~ 555 (589)
.|... .+...+..+...+++
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHH
Confidence 33444 666777777777764
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=3e-07 Score=76.44 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=88.7
Q ss_pred CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHH
Q 048179 374 VKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWV 450 (589)
Q Consensus 374 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 450 (589)
+.|+ ...+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++.. ..| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3454 346777888899999999999999999864 23458889999999999999999999999873 344 577899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999764
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=2e-07 Score=80.35 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=101.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHHcCCH--
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDL-LARAGEV-- 430 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 430 (589)
...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998888764 4466788888899999999999999999988642 3456778888888 7789998
Q ss_pred HHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 431 EEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 431 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
++|...++++. ..| +...|..+...+...|++++|...+++++++.|+++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 99999998873 234 56788889999999999999999999999999988765443
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.62 E-value=4.2e-08 Score=80.65 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcc-------CCCCchhH----HHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 447 AVWVALLSGCHNHKKFSIGEKVAKKVLKL-------NPDDLGIH----ALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
..|..+..++...|++++|+..+++++++ +|+++.+| ...+.++...|++++|+..+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 48899999999999999999999999999 99999999 99999999999999999999998763
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=5.2e-07 Score=73.14 Aligned_cols=97 Identities=9% Similarity=0.073 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSM-STEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFF 490 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 490 (589)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++.+|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3667888999999999999999999986 3344 6778999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 048179 491 AMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 491 ~~~g~~~~a~~~~~~m~~~ 509 (589)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998763
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=1.8e-07 Score=75.51 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc-------hhHHH
Q 048179 415 KHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL-------GIHAL 485 (589)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 485 (589)
..+..++..+.+.|++++|++.|++.. ..| +..+|..+..+|...|++++|++.++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 355667788888888888888887752 234 566788888888899999999999999988887654 36777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 048179 486 VSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 486 l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+|.+|...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888889999999999888765
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=7.2e-07 Score=70.41 Aligned_cols=108 Identities=9% Similarity=0.059 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCH 457 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 457 (589)
.+..+...+...|++++|...|+.+... .+.+...+..+..++.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555556666666666555542 12234455555555566666666666555542 122 3455566666666
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666666555544
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=3.3e-07 Score=80.59 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcCC-C-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 048179 415 KHYACMVDLLARAGEVEEALKIVDSMST-E-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM 492 (589)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 492 (589)
..+..+..+|.+.|++++|+..+++... . .+..++..+..++...|++++|+..++++++++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677788888899999999988888632 3 3577888899999999999999999999999999999999999999999
Q ss_pred CCChHHHH-HHHHHHHhC
Q 048179 493 EQKWEEVA-GVRKTMRKS 509 (589)
Q Consensus 493 ~g~~~~a~-~~~~~m~~~ 509 (589)
.|+.+++. ..++.|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 98888877 556555443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=4.3e-07 Score=71.73 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=87.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFF 490 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 490 (589)
....+..++..+...|++++|.+.+++.. ..| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34567788899999999999999999873 234 6778889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCC
Q 048179 491 AMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 491 ~~~g~~~~a~~~~~~m~~~g 510 (589)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999988643
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=4.8e-07 Score=79.69 Aligned_cols=153 Identities=11% Similarity=-0.029 Sum_probs=89.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHHcCCH
Q 048179 355 IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKY---KIQP-TEKHYACMVDLLARAGEV 430 (589)
Q Consensus 355 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 430 (589)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++..... +..| ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566666664333322 111233455556666666666666666666655421 1111 134556666677777777
Q ss_pred HHHHHHHHhcCC----CC-C----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCC--CC----chhHHHHHHHHHhCCC
Q 048179 431 EEALKIVDSMST----EP-G----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP--DD----LGIHALVSNFFAMEQK 495 (589)
Q Consensus 431 ~~A~~~~~~~~~----~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~ 495 (589)
++|.+.+++... .+ + ..++..+...+...|++++|+..+++++++.+ .+ ...+..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 777766665411 12 1 23466667777788888888888888775432 12 2345778888888888
Q ss_pred hHHHHHHHHHHHh
Q 048179 496 WEEVAGVRKTMRK 508 (589)
Q Consensus 496 ~~~a~~~~~~m~~ 508 (589)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877754
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=1.6e-06 Score=81.63 Aligned_cols=162 Identities=10% Similarity=-0.082 Sum_probs=120.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcCC--C-Ch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 048179 314 LGTSVIDMYSKCGVPSCARALFDQMQS--R-DL------ISWNVIIASYGIHGHGEEALSLFLQMIETMV---KPD--HS 379 (589)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~ 379 (589)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788889999999998876542 1 11 2234455667788999999999999876421 122 34
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC-------Ch
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT-----EKHYACMVDLLARAGEVEEALKIVDSMST-EP-------GL 446 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-------~~ 446 (589)
++..+...|...|++++|..+|+++.+.....|+ ...+..+..+|.+.|++++|++.+++... .+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999998743222222 25788899999999999999999987621 11 15
Q ss_pred hHHHHHHHHHHhcCCchHH-HHHHHHHhcc
Q 048179 447 AVWVALLSGCHNHKKFSIG-EKVAKKVLKL 475 (589)
Q Consensus 447 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 475 (589)
.++..+..++...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788889999999999999 8889988764
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=4.4e-06 Score=78.50 Aligned_cols=159 Identities=11% Similarity=-0.060 Sum_probs=120.3
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 048179 317 SVIDMYSKCGVPSCARALFDQMQSR---DL------ISWNVIIASYGIHGHGEEALSLFLQMIETMVK-PD----HSTFA 382 (589)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~ 382 (589)
..+..+...|++++|...+++..+. +. ..+..+...+...+++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999887541 11 12334666677788999999999999884322 22 23688
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcC----CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-------CCC-hhHH
Q 048179 383 SLLSALSHSGLVEEGRYWFDLMVSKYK----IQPT-EKHYACMVDLLARAGEVEEALKIVDSMST-------EPG-LAVW 449 (589)
Q Consensus 383 ~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p~-~~~~ 449 (589)
.+..+|...|++++|..+|+.+.+... ..+. ..++..+...|.+.|++++|.+.+++... .+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999875321 1111 34778899999999999999999987621 122 5678
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHhcc
Q 048179 450 VALLSGCHNHKK-FSIGEKVAKKVLKL 475 (589)
Q Consensus 450 ~~l~~~~~~~~~-~~~a~~~~~~~~~~ 475 (589)
..+..++...|+ +++|.+.+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999995 59999999999864
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=5.4e-07 Score=72.51 Aligned_cols=112 Identities=9% Similarity=0.014 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHH
Q 048179 379 STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGC 456 (589)
Q Consensus 379 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 456 (589)
..+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45566667777788888888888887753 23346777888888888888888888887763 234 566888888899
Q ss_pred HhcCCchHHHHHHHHHhccC------CCCchhHHHHHHHHHh
Q 048179 457 HNHKKFSIGEKVAKKVLKLN------PDDLGIHALVSNFFAM 492 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 492 (589)
...|++++|+..++++++++ |++...+..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999998 8888877777766543
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.2e-06 Score=72.59 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSM-STEPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
...+..+...+...|++++|.+.|++. ...|+ ...|..+..++...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344555555555566666666655554 22344 3455555666666666666666666666666666666666666
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 048179 489 FFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 489 ~~~~~g~~~~a~~~~~~m~~ 508 (589)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=7.4e-07 Score=71.86 Aligned_cols=97 Identities=6% Similarity=0.009 Sum_probs=87.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFF 490 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 490 (589)
+...+..+...+...|++++|.+.+++.. .. .+...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35677888999999999999999999863 23 46778889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 048179 491 AMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 491 ~~~g~~~~a~~~~~~m~~~ 509 (589)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=6.7e-07 Score=71.40 Aligned_cols=96 Identities=11% Similarity=0.200 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56788889999999999999999998732 3467788999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048179 492 MEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 492 ~~g~~~~a~~~~~~m~~~ 509 (589)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=4.8e-07 Score=74.67 Aligned_cols=109 Identities=10% Similarity=-0.036 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHH
Q 048179 379 STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGC 456 (589)
Q Consensus 379 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 456 (589)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++.. ..| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34556667777888888888888888763 23356777888888888888888888888863 233 566788888889
Q ss_pred HhcCCchHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 457 HNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 457 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
...|++++|+..+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999888766554433
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=7.5e-07 Score=75.55 Aligned_cols=110 Identities=9% Similarity=-0.007 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHH
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSG 455 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 455 (589)
...+..+...+...|++++|+..|+.+.+. .+.+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456677777888888888888888888764 23357778888888889999999998888863 234 57788999999
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHH
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNF 489 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 489 (589)
+...|++++|+..++++++++|+++..+...+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999877665544
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.5e-06 Score=72.01 Aligned_cols=113 Identities=6% Similarity=-0.014 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHH
Q 048179 377 DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWV 450 (589)
Q Consensus 377 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 450 (589)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|++.+++.. ..| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345566666667777777777777777663 3344 5667777778888888888888877752 233 566788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM 492 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 492 (589)
.+..++...|++++|...++++++++|++...+..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888889999999999999999999999998888877776543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=2.1e-07 Score=81.90 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-C----------------hhHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-G----------------LAVWVALLSGCHNHKKFSIGEKVAKKVLKL 475 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 475 (589)
...+..+...+.+.|++++|.+.|++.. ..| + ..+|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3345556666777777777777776642 111 1 267888899999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 476 NPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 476 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+|+++.++..++.+|...|++++|.+.+++..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=7.1e-05 Score=70.64 Aligned_cols=172 Identities=8% Similarity=0.000 Sum_probs=96.9
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccC-chhhHHHHHHHHhhcCCCChhHHHHHHHHhHhc-C-CH
Q 048179 253 FAQNGLAGSTLELLMEMQSCGFEPDSV-SLVSALLACAQIG-FLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKC-G-VP 328 (589)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 328 (589)
..+.+..++|++++.+++.. .|+.. .++.--..+...+ .++.+..+.+.+....+.+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 33445556777777777765 44433 3343334444445 366666666666666666666666666666555 5 67
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc----
Q 048179 329 SCARALFDQMQS---RDLISWNVIIASYGIHGHGE--------EALSLFLQMIETMVKPDHSTFASLLSALSHSGL---- 393 (589)
Q Consensus 329 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~---- 393 (589)
++++++++++.+ +|..+|+--.-.+.+.|.++ ++++.++++++.. +-|...++.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 777777777765 34456655444444444444 6777777776654 2345555555555555554
Q ss_pred ---HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 394 ---VEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 394 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
+++++++++.+... .+-|...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45666666665542 22335555555555555444
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=7.7e-07 Score=71.82 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCC-CCCh----hHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC---chhHHHHHHH
Q 048179 418 ACMVDLLARAGEVEEALKIVDSMST-EPGL----AVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD---LGIHALVSNF 489 (589)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 489 (589)
..+...+.+.|++++|.+.|++... .|+. ..+..+..++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3456667777777777777777532 3432 366777777888888888888888888888877 6678888888
Q ss_pred HHhCCChHHHHHHHHHHHh
Q 048179 490 FAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 490 ~~~~g~~~~a~~~~~~m~~ 508 (589)
|...|++++|...++++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887775
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.4e-06 Score=76.66 Aligned_cols=154 Identities=9% Similarity=-0.015 Sum_probs=109.9
Q ss_pred HhcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCcH
Q 048179 323 SKCGVPSCARA---LFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIET----MVKP-DHSTFASLLSALSHSGLV 394 (589)
Q Consensus 323 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~a~~~~g~~ 394 (589)
...|++++|.+ .+..-+.....++..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35678888888 554433334567888888888899999999988887762 2222 234677788888899999
Q ss_pred HHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC----hhHHHHHHHHHHhcCC
Q 048179 395 EEGRYWFDLMVSKYKIQP-T----EKHYACMVDLLARAGEVEEALKIVDSMST----EPG----LAVWVALLSGCHNHKK 461 (589)
Q Consensus 395 ~~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~~~ 461 (589)
++|...+++..+...-.+ + ...+..+...+...|++++|.+.+++... .++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999988776422222 2 34577788899999999999998887521 122 2345777888999999
Q ss_pred chHHHHHHHHHhccC
Q 048179 462 FSIGEKVAKKVLKLN 476 (589)
Q Consensus 462 ~~~a~~~~~~~~~~~ 476 (589)
+++|.+.+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=1.2e-06 Score=71.46 Aligned_cols=114 Identities=9% Similarity=-0.014 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHH
Q 048179 376 PDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALL 453 (589)
Q Consensus 376 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 453 (589)
.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..++...|++++|...+++.. ..| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34567777777788888888888888887763 23346777788888888888888888887763 233 566788888
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCC-----CchhHHHHHHHHH
Q 048179 454 SGCHNHKKFSIGEKVAKKVLKLNPD-----DLGIHALVSNFFA 491 (589)
Q Consensus 454 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 491 (589)
.++...|++++|+..+++++++.|+ +......+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988887 5555555554433
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=1.9e-06 Score=69.40 Aligned_cols=95 Identities=9% Similarity=0.108 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-------chhHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMST--EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD-------LGIHA 484 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 484 (589)
...+..+...+...|++++|...+++... +.+...+..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566777888888888888888887622 2356778888888999999999999999999988766 78899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 048179 485 LVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 485 ~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
.++.+|...|++++|.+.++++.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999886
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=3.8e-06 Score=71.00 Aligned_cols=128 Identities=12% Similarity=-0.009 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048179 344 ISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDL 423 (589)
Q Consensus 344 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 423 (589)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356666777778888888888888877753 335667777777888888888888888887764 23446677778888
Q ss_pred HHHcCCHHHHHHHHHhcCC-CC-ChhHHHHH--HHHHHhcCCchHHHHHHHHHhc
Q 048179 424 LARAGEVEEALKIVDSMST-EP-GLAVWVAL--LSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
+.+.|++++|.+.+++... .| +...+..+ +..+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888877632 23 34444333 3336677888888888777654
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=5.1e-05 Score=71.27 Aligned_cols=190 Identities=10% Similarity=-0.029 Sum_probs=94.9
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHhHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC-HHHHHHHHHH
Q 048179 295 KLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCG--VPSCARALFDQMQS---RDLISWNVIIASYGIHGH-GEEALSLFLQ 368 (589)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~ 368 (589)
+.+..+++.+....|.+..+|+.-...+.+.| .++++..+++++.+ +|..+|+--.-.+...|. ++++++.+++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 34444444444455555555555555555555 35666666666653 345566655555555565 4666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcC--------------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc-------
Q 048179 369 MIETMVKPDHSTFASLLSALSHS--------------GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARA------- 427 (589)
Q Consensus 369 m~~~~~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 427 (589)
+++.. +-|...|+.....+.+. +.+++++++++.+... .+-|...|+-+-..+.+.
T Consensus 171 ~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 171 LITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccc
Confidence 66654 22344443333332222 3455666666665542 223344454443444333
Q ss_pred ----CCHHHHHHHHHhcC-CCCChhHHHHHHHHH-----HhcCCchHHHHHHHHHhccCCCCchhHHHHHH
Q 048179 428 ----GEVEEALKIVDSMS-TEPGLAVWVALLSGC-----HNHKKFSIGEKVAKKVLKLNPDDLGIHALVSN 488 (589)
Q Consensus 428 ----g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 488 (589)
+.++++++.++++. ..||. .|..+..+. ...+..++....+.++.++||...+.|..+..
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 34555555555542 23443 333222211 12344555566666666666655555554433
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=6.8e-07 Score=90.19 Aligned_cols=119 Identities=10% Similarity=0.026 Sum_probs=94.6
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCc
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKF 462 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~ 462 (589)
...+...|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +..+|..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34456778888888888888764 23347788888889999999999999888862 334 567888999999999999
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHH--HHhCCChHHHHHHHHH
Q 048179 463 SIGEKVAKKVLKLNPDDLGIHALVSNF--FAMEQKWEEVAGVRKT 505 (589)
Q Consensus 463 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 505 (589)
++|++.++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8889999999999873
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=1.9e-06 Score=82.70 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC----------------hhHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEPG----------------LAVWVALLSGCHNHKKFSIGEKVAKKVLKLN 476 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 476 (589)
...+..+...|.+.|++++|+..|++.. ..|+ ..+|..+..++...|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3445555566666666666666665542 1222 4788999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 477 PDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 477 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
|+++.+|..++.+|...|++++|...++++.+..
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999998743
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=3.1e-05 Score=73.13 Aligned_cols=213 Identities=9% Similarity=0.017 Sum_probs=156.5
Q ss_pred chhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhc-C-CHHHHHHHH
Q 048179 293 FLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCG-VPSCARALFDQMQS---RDLISWNVIIASYGIH-G-HGEEALSLF 366 (589)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~ 366 (589)
..+.|..+.+.+....+.+..+++.-...+...| .+++++..++.+.. .+..+|+.-...+... + +++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3456777888888778888888888888888888 59999999998875 4567888877777666 6 889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCcHH--------HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-------HH
Q 048179 367 LQMIETMVKPDHSTFASLLSALSHSGLVE--------EGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE-------VE 431 (589)
Q Consensus 367 ~~m~~~~~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~ 431 (589)
+++.+.. +-|...+..-...+.+.|.++ +++++++++.+. -+-|...|+....++.+.++ ++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 9998764 335666665555555555555 899999999874 24467788888888888876 78
Q ss_pred HHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCc--------------------hHHHHHHHHHhccC------CCCchhH
Q 048179 432 EALKIVDSMS-TEP-GLAVWVALLSGCHNHKKF--------------------SIGEKVAKKVLKLN------PDDLGIH 483 (589)
Q Consensus 432 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~ 483 (589)
++++.++++. ..| |...|+.+-..+...|+. .........+.... +.++.++
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 8999888763 344 677888877777776654 22333333333322 4677788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 484 ALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 484 ~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
..|+++|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 8999999999999999999999864
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=2.7e-07 Score=73.24 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHhcCCC----C-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHH
Q 048179 427 AGEVEEALKIVDSMSTE----P-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAG 501 (589)
Q Consensus 427 ~g~~~~A~~~~~~~~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 501 (589)
.|++++|+..|++.... | +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777665322 3 345677777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHh
Q 048179 502 VRKTMRK 508 (589)
Q Consensus 502 ~~~~m~~ 508 (589)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.40 E-value=2.6e-06 Score=85.57 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CC-CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TE-PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...|..+..+|.+.|++++|+..++++. .. .+...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4577888899999999999999998863 23 467789999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHH-HHHHHHh
Q 048179 492 MEQKWEEVAG-VRKTMRK 508 (589)
Q Consensus 492 ~~g~~~~a~~-~~~~m~~ 508 (589)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998864 4565543
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=5.8e-05 Score=70.90 Aligned_cols=178 Identities=10% Similarity=0.075 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-HHHHHHHH
Q 048179 328 PSCARALFDQMQS---RDLISWNVIIASYGIHG--HGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGL-VEEGRYWF 401 (589)
Q Consensus 328 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 401 (589)
+++++.+++.+.. .+..+|+.-.-.+...+ .+++++.+++++.+.. +-|...|..-...+...|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777654 56778888777777777 4899999999999976 4466677766666777787 68999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHc--------------CCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhc------
Q 048179 402 DLMVSKYKIQPTEKHYACMVDLLARA--------------GEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNH------ 459 (589)
Q Consensus 402 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~------ 459 (589)
+.+.+. -+-|...|+....++.+. +.++++++.+++.. ..| |..+|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999974 345577777776666665 55888999888863 344 677887666655544
Q ss_pred -----CCchHHHHHHHHHhccCCCCchhHHHHHHHHH---hCCChHHHHHHHHHHHh
Q 048179 460 -----KKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA---MEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 460 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~ 508 (589)
+.++++++.++++++++|++.-++..++.+.. ..|..++....+.++++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45789999999999999998655554443322 36788889999998886
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=4e-06 Score=65.31 Aligned_cols=101 Identities=13% Similarity=-0.002 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC---ChhHHHHHH
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP---GLAVWVALL 453 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~ 453 (589)
...+..+...+...|++++|...|+.+.+. .+.+...+..+..++...|++++|.+.+++.. ..| +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 345556667777788888888888887763 23346677778888888888888888888762 233 467888888
Q ss_pred HHHHhc-CCchHHHHHHHHHhccCCCCc
Q 048179 454 SGCHNH-KKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 454 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 480 (589)
.++... |++++|++.++++++..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 889999 999999999999999988764
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=3.2e-06 Score=78.87 Aligned_cols=105 Identities=8% Similarity=-0.040 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHH
Q 048179 377 DHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLS 454 (589)
Q Consensus 377 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 454 (589)
+...+..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556777777888888888888888888763 22356777788888888888888888888763 334 4567777888
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCchhH
Q 048179 455 GCHNHKKFSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 455 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
++...|++++|+..++++++++|+++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhH
Confidence 88888888888888888888887664433
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=2.5e-06 Score=68.62 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC----C----hhHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-EP----G----LAVWV 450 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~----~~~~~ 450 (589)
++..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|++.+++... .| + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444555555555555555555555542 122244555555555555555555555554311 11 1 23566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCC
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLKLNPD 478 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 478 (589)
.+..++...|++++|++.++++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6777788888888888888888887773
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=4e-06 Score=70.38 Aligned_cols=128 Identities=10% Similarity=-0.016 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC----hhH
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EKHYACMVDLLARAGEVEEALKIVDSMST----EPG----LAV 448 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~ 448 (589)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++... .++ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555544432111111 12455556666666666666666655411 111 345
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCC------CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNP------DDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
+..+...+...|++++|.+.+++++++.+ ..+..+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66677778888888888888888876532 2245678889999999999999999888764
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=1e-06 Score=84.61 Aligned_cols=148 Identities=13% Similarity=0.026 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 343 LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
...|..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666677777888888888888887764 344331 233344444432221 126777888
Q ss_pred HHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHH-HhCCChHHH
Q 048179 423 LLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFF-AMEQKWEEV 499 (589)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 499 (589)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888863 234 5678888889999999999999999999999999998888888884 455677788
Q ss_pred HHHHHHHHhCC
Q 048179 500 AGVRKTMRKSG 510 (589)
Q Consensus 500 ~~~~~~m~~~g 510 (589)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=7.9e-06 Score=81.57 Aligned_cols=189 Identities=6% Similarity=-0.025 Sum_probs=133.6
Q ss_pred HHhHhcCCHHHHHHHHHhcCC--C---C---------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH
Q 048179 320 DMYSKCGVPSCARALFDQMQS--R---D---------------LISWNVIIASYGIHGHGEEALSLFLQMIETM-VKPDH 378 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 378 (589)
..+.+.|++++|.+.|..+.+ + + ..++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345666777777777766542 1 0 0246678888999999999999988876531 11222
Q ss_pred H----HHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHhcC----C---C
Q 048179 379 S----TFASLLSALSHSGLVEEGRYWFDLMVSKY---KIQPT-EKHYACMVDLLARAGEVEEALKIVDSMS----T---E 443 (589)
Q Consensus 379 ~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~---~ 443 (589)
. +...+...+...|+++++..+++...... +..+. ...+..++..|...|++++|..++++.. . +
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 23334444556789999999988875431 22222 4567789999999999999999988752 1 1
Q ss_pred C-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccC---CCC----chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 444 P-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN---PDD----LGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 444 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
| ...++..++..|...|++++|...+++++... ++. ...+..++.++...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 24477888889999999999999999998653 222 35667788889999999999988877753
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=2.2e-06 Score=69.03 Aligned_cols=110 Identities=5% Similarity=-0.016 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-----CCC----hhHHH
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST-----EPG----LAVWV 450 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~----~~~~~ 450 (589)
.+..+...+...|++++|..+|+.+... .+.+...+..+..++...|++++|...++++.. .++ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555566666666666666666543 123455566666666677777777766666421 112 55677
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAM 492 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 492 (589)
.+..++...|++++|...++++++..| ++.....++.++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 788888889999999999999998888 56666666665544
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=3.3e-06 Score=67.21 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=70.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHh
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHN 458 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 458 (589)
+..+...+.+.|++++|...|+.+.+. -+.+...|..+..++.+.|++++|+..+++.. ..| +...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444556677788888888888888763 23357777788888888888888888888763 234 56678888888888
Q ss_pred cCCchHHHHHHHHHhccCCCCc
Q 048179 459 HKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 459 ~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999998888754
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.29 E-value=9.4e-06 Score=65.25 Aligned_cols=107 Identities=8% Similarity=0.010 Sum_probs=75.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC----hhHHHHHHH
Q 048179 383 SLLSALSHSGLVEEGRYWFDLMVSKYKIQPTE---KHYACMVDLLARAGEVEEALKIVDSMS-TEPG----LAVWVALLS 454 (589)
Q Consensus 383 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 454 (589)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...+++.. ..|+ ..++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455666777777777777776542 1122 466667777888888888888877752 2233 456777888
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 455 GCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 455 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
++...|++++|...++++++..|+++........+-.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8889999999999999999999988766665554433
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=2.3e-06 Score=72.30 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc-hhHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL-GIHALVSNFF 490 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 490 (589)
...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4678888899999999999999998863 234 577899999999999999999999999999999988 5566665554
Q ss_pred Hh
Q 048179 491 AM 492 (589)
Q Consensus 491 ~~ 492 (589)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=4.4e-06 Score=84.25 Aligned_cols=115 Identities=13% Similarity=0.008 Sum_probs=60.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH
Q 048179 353 YGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEE 432 (589)
Q Consensus 353 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 432 (589)
+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++++.+. .+.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 445566666666666665542 223455666666666666666666666666542 22235556666666666666666
Q ss_pred HHHHHHhcC-CCC-ChhHHHHHHHH--HHhcCCchHHHHHHH
Q 048179 433 ALKIVDSMS-TEP-GLAVWVALLSG--CHNHKKFSIGEKVAK 470 (589)
Q Consensus 433 A~~~~~~~~-~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 470 (589)
|.+.+++.. ..| +...+..+..+ +...|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666542 122 23344444444 555666666666666
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=4.6e-06 Score=80.94 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSM-STEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888999999999999999999987 3345 57788999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHH
Q 048179 492 MEQKWEEVAGV 502 (589)
Q Consensus 492 ~~g~~~~a~~~ 502 (589)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99988887653
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.22 E-value=5e-06 Score=63.54 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 444 PGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 444 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
.+...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999999999999999999999999999988753
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=6.8e-06 Score=82.48 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 446 LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 446 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46888999999999999999999999999999999999999999999999999999999998743
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=8.8e-06 Score=78.98 Aligned_cols=112 Identities=8% Similarity=0.039 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 048179 379 STFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEP-GLAVWVALLSGCH 457 (589)
Q Consensus 379 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 457 (589)
..+..+...+.+.|++++|...|+++.+.. +.. ......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345556666666777777777776665421 000 0000111111 0122 4568888999999
Q ss_pred hcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 458 NHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 458 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
..|++++|+..++++++++|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998863
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=2.4e-06 Score=70.23 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhc-CC-------CCC-hhHH----HHHHHHHHhcCCchHHHHHHHHHhccCCCCchh
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSM-ST-------EPG-LAVW----VALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGI 482 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 482 (589)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666677777777777777666654 22 565 5578 899999999999999999999999999998876
Q ss_pred HHHHHHH
Q 048179 483 HALVSNF 489 (589)
Q Consensus 483 ~~~l~~~ 489 (589)
+..+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6555433
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=1.7e-06 Score=68.51 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHH
Q 048179 391 SGLVEEGRYWFDLMVSKYK--IQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGE 466 (589)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~ 466 (589)
.|++++|+..|+++.+. + -+.+...+..+..+|.+.|++++|++.+++.. ..| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777888888877742 1 12235677788888888888888888888763 234 4667788888889999999999
Q ss_pred HHHHHHhccCCCCchhHHH
Q 048179 467 KVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 467 ~~~~~~~~~~p~~~~~~~~ 485 (589)
..++++++..|+++.....
T Consensus 82 ~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 9999999998888765443
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=5.5e-05 Score=77.70 Aligned_cols=170 Identities=11% Similarity=0.012 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 048179 326 GVPSCARALFDQMQS---RDLISWNVIIASYGIHGH----------GEEALSLFLQMIETMVKPDHSTFASLLSALSHSG 392 (589)
Q Consensus 326 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g 392 (589)
...++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677888887764 345678777666666666 899999999999875 335667877777888888
Q ss_pred --cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhc--------
Q 048179 393 --LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAG-EVEEALKIVDSMST-EP-GLAVWVALLSGCHNH-------- 459 (589)
Q Consensus 393 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~-------- 459 (589)
+++++.++++.+.+. -+-+...|+.-..++.+.| .++++++.++++.. .| |..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999974 2345778888888888889 89999999998743 44 678898888876653
Q ss_pred ------CCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHH
Q 048179 460 ------KKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEE 498 (589)
Q Consensus 460 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 498 (589)
+.++++.+.+.++++++|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998665
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.12 E-value=2.1e-06 Score=70.40 Aligned_cols=86 Identities=7% Similarity=-0.028 Sum_probs=64.8
Q ss_pred HcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCC----------chHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 426 RAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKK----------FSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 426 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
|.+++++|.+.+++.. ..| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455666666666542 223 45566666666665554 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCCC
Q 048179 494 Q-----------KWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 494 g-----------~~~~a~~~~~~m~~~g~ 511 (589)
| ++++|.+.|+++.+..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999987443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=4.1e-06 Score=65.27 Aligned_cols=93 Identities=8% Similarity=-0.015 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------chhHH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD------LGIHA 484 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 484 (589)
+...+..+...+.+.|++++|++.+++.. ..| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567778888888888888888888762 233 57788888999999999999999999999999988 77888
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 048179 485 LVSNFFAMEQKWEEVAGVRKT 505 (589)
Q Consensus 485 ~l~~~~~~~g~~~~a~~~~~~ 505 (589)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00035 Score=69.49 Aligned_cols=162 Identities=7% Similarity=-0.143 Sum_probs=99.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHH----HHHHHHHHHhccCchhhHHHHHHHHh---h--c-CCCChhH
Q 048179 246 WGALISGFAQNGLAGSTLELLMEMQSCG-FEPDSV----SLVSALLACAQIGFLKLGKSIHGYTV---R--R-FDFNLVL 314 (589)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~---~--~-~~~~~~~ 314 (589)
+..++..|...|++++|.+.+.++...- ..++.. ....+-..+...|..+.+..++.... . + ......+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455666666666666666666554321 011111 11222223344566677766666554 1 1 1122456
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCC--------C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CC-C--HH
Q 048179 315 GTSVIDMYSKCGVPSCARALFDQMQS--------R-DLISWNVIIASYGIHGHGEEALSLFLQMIET--MV-KP-D--HS 379 (589)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~ 379 (589)
+..+...|...|++++|..+++.+.. + .+..+..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 67788888888888888888876532 1 1346778888888999999999888876642 11 12 1 23
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSK 407 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 407 (589)
.+..+...+...|++++|...|....+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5566667778889999998888777653
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=1.8e-05 Score=66.29 Aligned_cols=133 Identities=11% Similarity=0.028 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hh
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVK-PD----HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT----EK 415 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 415 (589)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666665542110 11 135566666677777777777777776543211111 34
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC----CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMST----EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 477 (589)
.+..+...+...|++++|.+.+++... .++ ..++..+...+...|++++|.+.+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 566677777788888888877776521 111 34566777778888999999999888876543
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=2.9e-05 Score=77.75 Aligned_cols=125 Identities=13% Similarity=0.045 Sum_probs=96.9
Q ss_pred HHhcCCcHHHHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcC---------CCCC-hhHHH
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKY--KIQPT----EKHYACMVDLLARAGEVEEALKIVDSMS---------TEPG-LAVWV 450 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~ 450 (589)
.+...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557788999988888766532 12222 4578888999999999999998887752 2344 34688
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhc-----cCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048179 451 ALLSGCHNHKKFSIGEKVAKKVLK-----LNPDDLG---IHALVSNFFAMEQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 451 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 511 (589)
.|...|..+|++++|+.+++++++ ++|+++. ....+..++..+|++++|..+++.+++.-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999985 4677764 456788889999999999999999987543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=2e-05 Score=58.61 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 048179 414 EKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFA 491 (589)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 491 (589)
...+..+...+.+.|++++|...+++.. ..| +..+|..+..++...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566677777888888888888887752 223 56678888888889999999999999999999999988888888887
Q ss_pred hCC
Q 048179 492 MEQ 494 (589)
Q Consensus 492 ~~g 494 (589)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=2.3e-05 Score=61.53 Aligned_cols=78 Identities=8% Similarity=0.078 Sum_probs=65.7
Q ss_pred HHHHHHHhc-CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 432 EALKIVDSM-STEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 432 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
+|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355566654 3334 56788888889999999999999999999999999999999999999999999999999988763
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=2e-05 Score=75.56 Aligned_cols=152 Identities=9% Similarity=-0.013 Sum_probs=83.7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 048179 312 LVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHS 391 (589)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~ 391 (589)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45567888899999999999999998764221111 1223344444443321 13677888899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCC-hhHHHHHHHH-HHhcCCchHHHHH
Q 048179 392 GLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPG-LAVWVALLSG-CHNHKKFSIGEKV 468 (589)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~-~~~~~~~~~a~~~ 468 (589)
|++++|+..++.+.+. .+.+...|..+..+|...|++++|...|++.. ..|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 23457888999999999999999999999974 3454 4455555555 3455778889999
Q ss_pred HHHHhccCCCCc
Q 048179 469 AKKVLKLNPDDL 480 (589)
Q Consensus 469 ~~~~~~~~p~~~ 480 (589)
++++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999998765
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.01 E-value=3.7e-05 Score=57.37 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=60.8
Q ss_pred CChhHHHHHHHHHHhcCC---chHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 444 PGLAVWVALLSGCHNHKK---FSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 444 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
+|+..+..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467788888888765544 799999999999999999999999999999999999999999999986543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=2.6e-05 Score=60.58 Aligned_cols=66 Identities=2% Similarity=-0.097 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998643
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.90 E-value=0.00012 Score=59.50 Aligned_cols=111 Identities=6% Similarity=-0.076 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCchHHHHH
Q 048179 393 LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHN----HKKFSIGEKV 468 (589)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 468 (589)
++++|.+.|++..+. + .|+ .. |...|...+..++|.++|++.....+...+..|...|.. .+|+++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 344555555555443 2 111 11 444454555555555555554333455555555555555 5666777777
Q ss_pred HHHHhccCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 048179 469 AKKVLKLNPDDLGIHALVSNFFAM----EQKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 469 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 511 (589)
++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7776655 456667777777777 6777777777777766553
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.88 E-value=6.6e-06 Score=78.68 Aligned_cols=238 Identities=13% Similarity=0.039 Sum_probs=166.8
Q ss_pred CCcchHhHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 048179 8 AYGNSVGRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACV 87 (589)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 87 (589)
-.+.+|+.|..++.+.+++.+|...|=+ ..|...|..+|.+..+.|.+++-++.+...++..- ++..=+.++-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 3577899999999999999888876644 45677889999999999999999998877665532 4444467888899
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHHHhcCC------------------------CCcc
Q 048179 88 SLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCGKMNEAMVAFEKMQR------------------------KDLV 143 (589)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 143 (589)
+.+++.+-.+++. .||..-.....+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8887665444332 36666666777777788888888877776651 3677
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Q 048179 144 CWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHL-NLDVKVQTSLVDMY 222 (589)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 222 (589)
+|-.+-.+|...+.+.-|.-+--.++- .|| -+..++.-|-..|.+++-..+++..+ |+ ......|+-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 899988899988888776655444332 122 22334555677788888777777655 32 34567888888888
Q ss_pred HhcCCHHHHHHHHhhcCC-----------CCeehHHHHHHHHHhCCChhHHHH
Q 048179 223 AKTGHLDLASHVFKNMSR-----------INIVTWGALISGFAQNGLAGSTLE 264 (589)
Q Consensus 223 ~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~ 264 (589)
++- ++++-.+.++.... .....|.-++-.|.+..++|.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 875 55666655554322 234578888888888888887753
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=2.2e-05 Score=78.63 Aligned_cols=115 Identities=13% Similarity=0.020 Sum_probs=88.2
Q ss_pred HHHHHcCCHHHHHHHHHhcC---------CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhcc-----CCCCc---hhH
Q 048179 422 DLLARAGEVEEALKIVDSMS---------TEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKL-----NPDDL---GIH 483 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~ 483 (589)
..+...|++++|+.++++.. ..|+ ..+++.|..+|..+|++++|+.++++++++ .|+++ ..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999987751 1233 447899999999999999999999999853 45554 578
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048179 484 ALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMR 554 (589)
Q Consensus 484 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (589)
..|+.+|..+|++++|..+++++.+.-. +.-| ..||...++...+.....++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999875211 1111 369998888877777665554
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.00025 Score=72.76 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCc----------HHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048179 356 HGHGEEALSLFLQMIETMVKPDH-STFASLLSALSHSGL----------VEEGRYWFDLMVSKYKIQPTEKHYACMVDLL 424 (589)
Q Consensus 356 ~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 424 (589)
....++|++.++++.+. .|+. ..|+.--.++...|+ +++++++++.+.+. -+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34467889999999986 4554 455555555555555 89999999999974 344577888888889
Q ss_pred HHcC--CHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcC-CchHHHHHHHHHhccCCCCchhHHHHHHHHHhC------
Q 048179 425 ARAG--EVEEALKIVDSMST--EPGLAVWVALLSGCHNHK-KFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME------ 493 (589)
Q Consensus 425 ~~~g--~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 493 (589)
.+.| +++++++.++++.. ..+..+|+.-..+....| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 77999999999832 347889999998988889 899999999999999999999999999998874
Q ss_pred --------CChHHHHHHHHHHHhCCC
Q 048179 494 --------QKWEEVAGVRKTMRKSGM 511 (589)
Q Consensus 494 --------g~~~~a~~~~~~m~~~g~ 511 (589)
++++++.+.++++....+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCC
Confidence 567999999988876443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.81 E-value=0.00014 Score=53.85 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=60.3
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
+...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888889999999999999999999999999999999999999999999999999998864
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.80 E-value=3.5e-05 Score=76.03 Aligned_cols=116 Identities=12% Similarity=0.115 Sum_probs=87.3
Q ss_pred HHHHHHcCCHHHHHHHHHhcCC------CCC----hhHHHHHHHHHHhcCCchHHHHHHHHHhcc-----CCCCc---hh
Q 048179 421 VDLLARAGEVEEALKIVDSMST------EPG----LAVWVALLSGCHNHKKFSIGEKVAKKVLKL-----NPDDL---GI 482 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~------~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 482 (589)
+..+.+.|++++|++++++... .|+ ..+++.|..+|...|++++|+..+++++++ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445577788888888776511 122 346788888899999999999999988853 45544 57
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048179 483 HALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMR 554 (589)
Q Consensus 483 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (589)
+..|+.+|..+|++++|..+++++.+.- .+.-| ..||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIM-RVTHG-----------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHhcC-----------------CCChHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999987521 11111 379999999999999888887
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=3.3e-05 Score=63.32 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHhc-CCCC-ChhHHHHHHHHHHhc-
Q 048179 393 LVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE----------VEEALKIVDSM-STEP-GLAVWVALLSGCHNH- 459 (589)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~- 459 (589)
.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. ...| +..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344444444444432 12224444444444444443 34666666654 2233 345666666666655
Q ss_pred ----------CCchHHHHHHHHHhccCCCCchhHHHH
Q 048179 460 ----------KKFSIGEKVAKKVLKLNPDDLGIHALV 486 (589)
Q Consensus 460 ----------~~~~~a~~~~~~~~~~~p~~~~~~~~l 486 (589)
|++++|++.|+++++++|++......+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 589999999999999999886444433
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.00038 Score=56.53 Aligned_cols=113 Identities=9% Similarity=-0.040 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHH
Q 048179 356 HGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLAR----AGEVE 431 (589)
Q Consensus 356 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 431 (589)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. .+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999887 44444 667778888899999999998874 467788888999988 89999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHhccCC
Q 048179 432 EALKIVDSMSTEPGLAVWVALLSGCHN----HKKFSIGEKVAKKVLKLNP 477 (589)
Q Consensus 432 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 477 (589)
+|.++|++.....+...+..|...|.. .+|+++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998666778888889988888 8999999999999988753
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=9.9e-05 Score=57.82 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 396 EGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 396 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
++...|+.+.+ ..+.+...+..+...|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666664 223346677777888888888888888887752 233 46678888888888888888888888888
Q ss_pred ccCCC
Q 048179 474 KLNPD 478 (589)
Q Consensus 474 ~~~p~ 478 (589)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 88764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.60 E-value=4.4e-05 Score=75.11 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHhcC---------CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHhcc-----CCCCc---hhHHHHHH
Q 048179 427 AGEVEEALKIVDSMS---------TEPG-LAVWVALLSGCHNHKKFSIGEKVAKKVLKL-----NPDDL---GIHALVSN 488 (589)
Q Consensus 427 ~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 488 (589)
.|++++|+.++++.. ..|+ ..+++.|..+|..+|++++|+.++++++++ .|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 356666666665531 1233 346778888888888888888888888753 45544 56888999
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 048179 489 FFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 489 ~~~~~g~~~~a~~~~~~m~~ 508 (589)
+|..+|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.54 E-value=0.00057 Score=55.28 Aligned_cols=91 Identities=7% Similarity=-0.060 Sum_probs=66.2
Q ss_pred CCChhHHHHHHHHHHhcC---CchHHHHHHHHHhccC-C-CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCce
Q 048179 443 EPGLAVWVALLSGCHNHK---KFSIGEKVAKKVLKLN-P-DDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGY 517 (589)
Q Consensus 443 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 517 (589)
.++..+...+..++.+.+ ++++|+.+++.+++.+ | ++..+++.|+-.|.+.|++++|+++++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--------- 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--------- 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh---------
Confidence 356677777777777766 6668888888888777 6 5577788888888888888888888888876
Q ss_pred eEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 048179 518 SVVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMRAISSW 559 (589)
Q Consensus 518 s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 559 (589)
..|...+.......+..++++.|..
T Consensus 100 -----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 -----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 2445566666666666777776643
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00023 Score=53.82 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=35.5
Q ss_pred HHHHHHcCCHHHHHHHHHhcC-CCC-Chh-HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhH
Q 048179 421 VDLLARAGEVEEALKIVDSMS-TEP-GLA-VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
...+.+.|++++|.+.+++.. ..| +.. .|..+..++...|++++|++.++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445555666666666665542 123 334 555555556666666666666666666666655544
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.005 Score=58.01 Aligned_cols=64 Identities=11% Similarity=-0.036 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
+..++..+...+...|+++.|...++++++++| +...|..++.++.-.|++++|.+.++++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444555554444555666666666666666654 3445555566666666666666666555543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.001 Score=50.02 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 386 SALSHSGLVEEGRYWFDLMVSKYKIQPTEK-HYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 386 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
..+...|++++|...|+.+.+. .+.+.. .+..+..+|.+.|++++|.+.|++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555542 122234 4555555555555555555555554
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0015 Score=49.44 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 048179 343 LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVS 406 (589)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 406 (589)
...|..+...|...|++++|+..|++.++.. +.+...+..+..++...|++++|...|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555555542 22334455555555555555555555555543
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.0023 Score=60.34 Aligned_cols=152 Identities=11% Similarity=0.014 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHH--hcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----CC----cH
Q 048179 329 SCARALFDQMQSRDLISWNVIIASYG--IHGH---GEEALSLFLQMIETMVKPD-HSTFASLLSALSH----SG----LV 394 (589)
Q Consensus 329 ~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~----~g----~~ 394 (589)
.++...... ...+..+|...+.+.. ..++ ..+|+.+|++.++. .|+ ...+..+..++.. .+ ..
T Consensus 181 ~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 333444433 3357788888887654 3333 57899999999986 455 4566665555531 11 11
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC-CCCChhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 048179 395 EEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS-TEPGLAVWVALLSGCHNHKKFSIGEKVAKKVL 473 (589)
Q Consensus 395 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 473 (589)
......++........+.+...|..+...+...|++++|...++++. ..|+...|..+...+...|++++|.+.+++++
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11112222221111335567888888888888899999999999973 35888888888888999999999999999999
Q ss_pred ccCCCCchhHH
Q 048179 474 KLNPDDLGIHA 484 (589)
Q Consensus 474 ~~~p~~~~~~~ 484 (589)
.++|..+ .|.
T Consensus 338 rL~P~~~-t~~ 347 (372)
T 3ly7_A 338 NLRPGAN-TLY 347 (372)
T ss_dssp HHSCSHH-HHH
T ss_pred hcCCCcC-hHH
Confidence 9999664 444
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0023 Score=62.87 Aligned_cols=95 Identities=18% Similarity=0.087 Sum_probs=70.0
Q ss_pred cCCcHHHHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcC---------CCCC-hhHHHHHH
Q 048179 390 HSGLVEEGRYWFDLMVSKY--KIQPT----EKHYACMVDLLARAGEVEEALKIVDSMS---------TEPG-LAVWVALL 453 (589)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~ 453 (589)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887765531 22233 4567888888999999999888887752 2344 34688899
Q ss_pred HHHHhcCCchHHHHHHHHHhc-----cCCCCchhHH
Q 048179 454 SGCHNHKKFSIGEKVAKKVLK-----LNPDDLGIHA 484 (589)
Q Consensus 454 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 484 (589)
..|..+|++++|+.+++++++ ++|+++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999986 4688775543
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.06 E-value=2.6e-05 Score=74.66 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=154.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048179 110 DVFVGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACAD 189 (589)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 189 (589)
.+.+|+.|..+....|++.+|++-| ++..|...|..+|....+.|.+++-++.+...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4556777777777777777766544 2335666777777777777888777777666555422 33334567777777
Q ss_pred cCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC------------------------CCeeh
Q 048179 190 LGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSR------------------------INIVT 245 (589)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 245 (589)
.+++.+-++.+. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 777654433321 34554555667777777777777777766532 46778
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhc
Q 048179 246 WGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKC 325 (589)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (589)
|-.+-.+|...+.+.-|--.--.++- .|| -+..++..|...|.+++-..+++.....-.....+++-|.-.|+|-
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 99988899998887766444333331 222 1233455677888888888888777754556778888888888875
Q ss_pred CCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHhcCCHHHHHH
Q 048179 326 GVPSCARALFDQMQS-----------RDLISWNVIIASYGIHGHGEEALS 364 (589)
Q Consensus 326 g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~ 364 (589)
++++..+-++.... .....|.-++-.|.+..+++.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44554444443332 244568888888888888887754
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.03 E-value=0.002 Score=58.09 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=69.6
Q ss_pred HHHHHHHHHhc-CCCCC---hhHHHHHHHHHHhc-----CCchHHHHHHHHHhccCCCC-chhHHHHHHHHHh-CCChHH
Q 048179 430 VEEALKIVDSM-STEPG---LAVWVALLSGCHNH-----KKFSIGEKVAKKVLKLNPDD-LGIHALVSNFFAM-EQKWEE 498 (589)
Q Consensus 430 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 498 (589)
..+|...+++. ...|+ ...|..|...|... |+.++|++.|+++++++|+. ..+++.++..+.. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555556554 33455 55788888888874 99999999999999999975 9999999999988 499999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 048179 499 VAGVRKTMRKSGMKKVPG 516 (589)
Q Consensus 499 a~~~~~~m~~~g~~~~~~ 516 (589)
|.+.+++.....+...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877765565
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.98 E-value=0.0065 Score=59.78 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=73.4
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcC---------CCCC-hhH
Q 048179 385 LSALSHSGLVEEGRYWFDLMVSKY--KIQPT----EKHYACMVDLLARAGEVEEALKIVDSMS---------TEPG-LAV 448 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~ 448 (589)
+..+...|++++|..++++..+.. -+.|+ ..+++.++.+|...|++++|+.++++.. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556678888888888776431 12233 4567788888888999999988887752 1244 346
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhc-----cCCCCchhHHH
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLK-----LNPDDLGIHAL 485 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 485 (589)
++.|...|..+|++++|+..++++++ ++|+++.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999985 46888755544
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.92 E-value=0.0059 Score=46.46 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---------CCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhH
Q 048179 413 TEKHYACMVDLLARAGEVEEALKIVDSMST---------EPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIH 483 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 483 (589)
+..-+..|+..+.+.|+++.|..+++.... .+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344455677777788888888877776421 13456788999999999999999999999999999998876
Q ss_pred HHHH
Q 048179 484 ALVS 487 (589)
Q Consensus 484 ~~l~ 487 (589)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6664
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.81 E-value=0.0092 Score=46.33 Aligned_cols=65 Identities=5% Similarity=-0.094 Sum_probs=36.6
Q ss_pred CChhHHHHHHHHHHhcCCch---HHHHHHHHHhccC-C-CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 444 PGLAVWVALLSGCHNHKKFS---IGEKVAKKVLKLN-P-DDLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 444 p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
|+..+--.+..++.+.++.. +++.+++.+++.+ | ........|+-.+.+.|++++|+++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445455555555444333 3666666666554 3 3445555666666666666666666666654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.0096 Score=48.15 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=51.4
Q ss_pred CChhhHHHHHHHHHHcC---CHHHHHHHHHhcCC-C-C--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHH
Q 048179 412 PTEKHYACMVDLLARAG---EVEEALKIVDSMST-E-P--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHA 484 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 484 (589)
++..+.-.+..++.+.+ +.++++.+++.... . | +...+..|.-+|.+.|++++|.+.++++++++|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 45555555555666655 44456665555421 2 3 3456677788899999999999999999999998875554
Q ss_pred HH
Q 048179 485 LV 486 (589)
Q Consensus 485 ~l 486 (589)
..
T Consensus 110 Lk 111 (152)
T 1pc2_A 110 LE 111 (152)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.38 E-value=0.13 Score=55.48 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=62.0
Q ss_pred HhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 048179 321 MYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYW 400 (589)
Q Consensus 321 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 400 (589)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 4456788888888776653 457788888888888888888888877532 22333334445565555544
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 401 FDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 401 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
-+.+... + .++....+|.+.|++++|++++.++
T Consensus 730 ~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4444332 1 2233344555566666666665544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.38 E-value=0.026 Score=41.70 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=51.4
Q ss_pred CCChhhHHHHHHHHHHcCC---HHHHHHHHHhcC-CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 048179 411 QPTEKHYACMVDLLARAGE---VEEALKIVDSMS-TEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 411 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
+++...+..+..++...++ .++|..++++.. ..| +...+..+...+...|++++|+..++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3556777777777765554 688888888763 344 45677777778888899999999999998888873
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.34 E-value=0.26 Score=38.36 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=91.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048179 354 GIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEA 433 (589)
Q Consensus 354 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 433 (589)
.-.|..++..++..+..... +..-++.++--....-+-+-..+.++.+-+-|.+.+ +|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 34567777777777766532 334455555444444455555666666655443322 3333333
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048179 434 LKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKK 513 (589)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 513 (589)
..-+-.+. .+.......+.....+|.-++-.+++..++.-.|.+++.+..++.+|.+.|+..+|.++++++=++|++.
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 33333332 2344455667778888888888888888777777789999999999999999999999999998888753
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.27 E-value=0.11 Score=41.06 Aligned_cols=90 Identities=6% Similarity=-0.046 Sum_probs=56.9
Q ss_pred CCChhHHHHHHHHHHhcC---CchHHHHHHHHHhccCCC-CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcee
Q 048179 443 EPGLAVWVALLSGCHNHK---KFSIGEKVAKKVLKLNPD-DLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYS 518 (589)
Q Consensus 443 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s 518 (589)
.|+..+--.+..++.+.. +..+++.+++.+++..|. ....+..|+-.+.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 355555555555555444 345677777777776663 455666677777777777777777777765
Q ss_pred EEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 048179 519 VVEVNGELHAFIMEDKSHNQYEDIVYVLKKLYLEMRAISS 558 (589)
Q Consensus 519 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 558 (589)
..|.+.+..+....+..+|.+.|.
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGl 129 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETL 129 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhch
Confidence 234555555555556666666664
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.23 E-value=1.1 Score=45.91 Aligned_cols=114 Identities=9% Similarity=0.106 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH
Q 048179 357 GHGEEALSLFLQMIETMVKPDHST----FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEE 432 (589)
Q Consensus 357 g~~~~A~~~~~~m~~~~~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 432 (589)
.+.+.|...|....+.. ..+... ...+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888876543 223222 222333344445345555566654432 2333333344455567789999
Q ss_pred HHHHHHhcCCCC-ChhHHHH-HHHHHHhcCCchHHHHHHHHHhc
Q 048179 433 ALKIVDSMSTEP-GLAVWVA-LLSGCHNHKKFSIGEKVAKKVLK 474 (589)
Q Consensus 433 A~~~~~~~~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 474 (589)
|...|+.|...+ +..-|.- +..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999998887543 2222222 33456678888888888888875
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.98 E-value=0.045 Score=59.12 Aligned_cols=154 Identities=14% Similarity=0.054 Sum_probs=85.3
Q ss_pred hHhcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 048179 322 YSKCGVPSCARA-LFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYW 400 (589)
Q Consensus 322 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 400 (589)
....+++++|.+ ++..+.. ......++..+.+.|..++|+++.+. |+ .- .......|++++|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHHH
Confidence 345677787777 5544331 12226666677778888887765531 11 11 1223456888888777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----------CCChhHHHHHHHHHHhcCCchHHHHHHH
Q 048179 401 FDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMST----------EPGLAVWVALLSGCHNHKKFSIGEKVAK 470 (589)
Q Consensus 401 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 470 (589)
.+.+ .+...|..+.+.+.+.|+++.|.+.|.++.. ..+...+..+...+...|+++.|..++.
T Consensus 675 ~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 675 LTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 5433 3567888888888888888888888887752 0112222233333344444444444433
Q ss_pred HHhccCCCCchhHHHHHHHHHhCCChHHHHHHHH
Q 048179 471 KVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRK 504 (589)
Q Consensus 471 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 504 (589)
+. .-+.....+|.+.++|++|..+-+
T Consensus 748 ~~--------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 748 IA--------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HH--------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hc--------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 32 112334455566666666666554
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.27 Score=40.76 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=73.0
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 048179 320 DMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRY 399 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~ 399 (589)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776665 3566777777777777777777777776432 2233333444566655554
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 048179 400 WFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKV 472 (589)
Q Consensus 400 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 472 (589)
+-+..... + -++.....+.-.|+++++.+++.+...-|... .....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 44444332 1 23444455556677777777776654322111 1123355556666665544
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.86 E-value=0.029 Score=42.47 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHhccC-------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 445 GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLN-------PDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 445 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
+..-...++..+...|+++.|..-++++++.. +..+.++..|+.+|.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34456678888999999999999999999752 345678999999999999999999999998863
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.61 E-value=0.15 Score=40.63 Aligned_cols=53 Identities=6% Similarity=-0.081 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 460 KKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 460 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
+|.++|.++|+.++++...-+..|...+..-.++|+...|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56677777777776654444566666666677777777777777777665543
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.051 Score=56.74 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=50.6
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 454 SGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 454 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.-|...|+++.|.++.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 347788999999999999999999999999999999999999999999999874
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.44 E-value=0.099 Score=40.71 Aligned_cols=65 Identities=8% Similarity=-0.036 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHHHhcC---CchHHHHHHHHHhccCCC-CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 444 PGLAVWVALLSGCHNHK---KFSIGEKVAKKVLKLNPD-DLGIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 444 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
|+..+--.+..++.+.. +..+|+.+++.+++.+|. ....+..|+-.+.+.|++++|+++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555445555554443 345677777777776663 456667777777777777777777777765
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.79 Score=38.00 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=76.4
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHH
Q 048179 119 NLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLS 198 (589)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 198 (589)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777776665 3456777777777777777777777777543 3444444555666665555
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHH
Q 048179 199 VHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEM 269 (589)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 269 (589)
+-+.....|- ++.....+.-.|+++++.++|.+..+.+ --.......|..+.|.++..++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 5554444441 3344445566788888888877655411 1111112355566666666554
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.24 E-value=0.24 Score=38.36 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=51.2
Q ss_pred CChhhHHHHHHHHHHcCCHHH---HHHHHHhcCCC--C--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHH
Q 048179 412 PTEKHYACMVDLLARAGEVEE---ALKIVDSMSTE--P--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHA 484 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 484 (589)
|+..+--.+..++.+.....+ ++.+++..... | .....-.|.-++.+.|++++|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555555666666665554 66666665322 3 2334556677899999999999999999999998876655
Q ss_pred HH
Q 048179 485 LV 486 (589)
Q Consensus 485 ~l 486 (589)
..
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.49 E-value=6.2 Score=42.25 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=50.2
Q ss_pred hHhHHHHhhhcCCChHHHHHHhccCCCCC--------------ccc----HHHHHHHHHcCCCch----hHHHHHHHHHH
Q 048179 12 SVGRIIALYGGKNDIVSARKLFEELPLRG--------------VDT----YNSIIIAYSRKESPF----EVLGLYNQMIK 69 (589)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~----~~~li~~~~~~g~~~----~a~~~~~~m~~ 69 (589)
+...++..+.+.|...+|..+.-+..+-| ... ++-++.+....-.++ +.+++.-.+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 45667777777788888877776654322 012 222333322222222 23332222221
Q ss_pred CCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHH
Q 048179 70 EDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVE 104 (589)
Q Consensus 70 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (589)
. . +..-|..++++..+.++.+.+.++|..+..
T Consensus 227 k-~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 227 N-M--PNCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp H-S--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred h-C--CchhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1 123467777888888999999999998764
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.36 E-value=0.062 Score=48.52 Aligned_cols=104 Identities=9% Similarity=0.106 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHc-----CCHHHHHHHHHhc-CCCCC--hhHHHHHHHHHHh-cCC
Q 048179 394 VEEGRYWFDLMVSKYKIQPT---EKHYACMVDLLARA-----GEVEEALKIVDSM-STEPG--LAVWVALLSGCHN-HKK 461 (589)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~ 461 (589)
...|...++++.+ +.|+ ...|..|...|.+. |+.++|.+.|++. ...|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4455566666653 4566 44677888888884 8888888888886 33553 6667777777666 488
Q ss_pred chHHHHHHHHHhccCCCC-chhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 462 FSIGEKVAKKVLKLNPDD-LGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 462 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
.+++.+.+++++..+|.. +. ..+++. +.-.+|..++.++
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~lan~----~~q~eA~~LL~~~ 295 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLLVI----LSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHHHH----HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHHHH----HHHHHHHHHHHHh
Confidence 999999999999887753 32 233333 3334566555544
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.88 E-value=7.6 Score=35.67 Aligned_cols=113 Identities=13% Similarity=0.059 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHH----HHHHHHCCCCCChhhHHHHHHHHH
Q 048179 113 VGSSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDA----YKRMKKEGIDADEVVMMGLIQACA 188 (589)
Q Consensus 113 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 188 (589)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ ++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444556677888888888764432 3445667777665554 455556688888888877777766
Q ss_pred ccCCcH-HHHHHHHHHHH----hc--CCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 048179 189 DLGDSR-FGLSVHGYSIR----RH--LNLDVKVQTSLVDMYAKTGHLDLASHVFK 236 (589)
Q Consensus 189 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (589)
....-+ .-..+...+++ .| ...++.....+...|.+.|++.+|+..|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 533211 22334444443 32 23477888889999999999999888775
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.82 E-value=3.7 Score=32.02 Aligned_cols=139 Identities=10% Similarity=0.010 Sum_probs=83.4
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHH
Q 048179 254 AQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARA 333 (589)
Q Consensus 254 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 333 (589)
.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+.++ ...||++.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD------------is~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD------------LDKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC------------GGGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC------------cHhhhcHHHHHH
Confidence 3456666666666666553 2233333333333333333333333333222222 134566666666
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Q 048179 334 LFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKI 410 (589)
Q Consensus 334 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 410 (589)
.+-.+-. +....+..+..+...|+-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.++.+. |+
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 6655543 344556667777888888888888888544 34777888888888888889888888888888776 55
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.29 E-value=10 Score=37.20 Aligned_cols=50 Identities=10% Similarity=-0.036 Sum_probs=33.5
Q ss_pred CCchhHHHHHHHHHHC-----CCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHH
Q 048179 55 ESPFEVLGLYNQMIKE-----DVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVE 104 (589)
Q Consensus 55 g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (589)
|++.+|++.+..+.+. +..........++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6788888877666542 2233444567778888888888887776665543
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.50 E-value=1.3 Score=36.04 Aligned_cols=113 Identities=10% Similarity=0.123 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHhcC-------CCCC
Q 048179 380 TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTE-------KHYACMVDLLARAGEVEEALKIVDSMS-------TEPG 445 (589)
Q Consensus 380 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~ 445 (589)
++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.. ..|+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444566667777777777777655432333432 244556677777777777777776631 1111
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 048179 446 LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTM 506 (589)
Q Consensus 446 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 506 (589)
. ..++. . ... ...-..+ +.+...-..++.+|.+.|++++|+.+++.+
T Consensus 102 ~--~~~~~-~---~ss-------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 V--RPSTG-N---SAS-------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c--ccccc-c---cCC-------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 00110 0 000 0000111 234467778999999999999999998865
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.35 E-value=3.5 Score=29.98 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=62.4
Q ss_pred CcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 192 DSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666665555443 33333334456678999999999999999999999988765 578888888888888887
Q ss_pred cCCCCCHHHHHH
Q 048179 272 CGFEPDSVSLVS 283 (589)
Q Consensus 272 ~g~~p~~~~~~~ 283 (589)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 566555543
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.91 E-value=3.2 Score=30.10 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=62.9
Q ss_pred CcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 192 DSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666655555442 33333334456678999999999999999999999988765 588998999888888888
Q ss_pred cCCCCCHHHHHH
Q 048179 272 CGFEPDSVSLVS 283 (589)
Q Consensus 272 ~g~~p~~~~~~~ 283 (589)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 77 566555543
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.84 E-value=12 Score=34.56 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=70.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHH----HHHHHCCCCCChhhHHHHHHHHHcc
Q 048179 115 SSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAY----KRMKKEGIDADEVVMMGLIQACADL 190 (589)
Q Consensus 115 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~~~ 190 (589)
.++..=|.+.+++++|.+++-.- ...+.+.|+...|-++- +...+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34555577788888888764332 34456677776555544 5555678888888877777777665
Q ss_pred CCcH-HHHHHHHHHHH----hc--CCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 048179 191 GDSR-FGLSVHGYSIR----RH--LNLDVKVQTSLVDMYAKTGHLDLASHVFK 236 (589)
Q Consensus 191 ~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (589)
..-+ .-..+.+.+++ .| ..-|+.....+...|.+.+++.+|+..|=
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5322 12333333333 33 33467777888888888888888888774
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.83 E-value=24 Score=37.89 Aligned_cols=254 Identities=12% Similarity=0.011 Sum_probs=121.5
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH--HHHhccCchhhHHHHHHHHh-hcC-------CCChhHHH--HHH
Q 048179 252 GFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSAL--LACAQIGFLKLGKSIHGYTV-RRF-------DFNLVLGT--SVI 319 (589)
Q Consensus 252 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~-~~~-------~~~~~~~~--~l~ 319 (589)
+....|+.++++.++......+-..+..+-...+ -+....|....+...+.... ... .+...... .|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566778888877776655421112333222222 22344444445555555444 221 01122222 333
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCChhH--HH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHH
Q 048179 320 DMYSKCGVPSCARALFDQMQSRDLIS--WN--VIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVE 395 (589)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~ 395 (589)
-+|.-.++-+-...+...+...+..+ .. +|...+.-.|+.+....++..+.+.. .-+..-+..+.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 33444444433333333333343322 11 12223445566666666666665531 111222333334455678888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHH--HHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHH--HHHhcCCchHHHHHHHH
Q 048179 396 EGRYWFDLMVSKYKIQPTEKHYA--CMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLS--GCHNHKKFSIGEKVAKK 471 (589)
Q Consensus 396 ~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 471 (589)
.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+...++..+-...+- +....|+.+.+.++++.
T Consensus 542 ~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 542 LADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888887753 223222222 234456677887776678887755444433333333 34456776666666655
Q ss_pred HhccCCCCchhHHHHHHHHHhCCC-hHHHHHHHHHHHh
Q 048179 472 VLKLNPDDLGIHALVSNFFAMEQK-WEEVAGVRKTMRK 508 (589)
Q Consensus 472 ~~~~~p~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~ 508 (589)
+.+-...+...-..++......|. ..+|..++..+..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 544221122222222222223333 2677888888764
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.79 E-value=14 Score=35.23 Aligned_cols=57 Identities=19% Similarity=0.049 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048179 349 IIASYGIHGHGEEALSLFLQMIETMVKPDH-----STFASLLSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 405 (589)
++..|...|++.+|.+++.++.+.--+.|. ..+..-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444555555555555555555443111111 122333344455555555555555543
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.71 E-value=2.5 Score=34.45 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048179 351 ASYGIHGHGEEALSLFLQMIET-MVKPDH-------STFASLLSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~ 405 (589)
..+...|.++.|+-+.+.+... +..|+. .++..+..++...|.+..|...|+.+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444555555555554443321 012221 244555566666666666666666643
No 250
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.47 E-value=7 Score=31.23 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=33.6
Q ss_pred CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCch
Q 048179 156 GQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDV 212 (589)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (589)
+++++|.++|+.++..+-+- ...|..-...=.+.|++..|.+++...+..+..|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 56677777777775542111 334444444445677777777777777776655543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.17 E-value=0.93 Score=43.69 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCccCC
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRK-----SGMKKVP 515 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 515 (589)
...++.++...|+++++...+++++..+|-+...|..+..+|.+.|+..+|++.|+..++ .|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 445667778889999999999999999999888999999999999999999998888754 4665543
No 252
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=88.81 E-value=23 Score=36.39 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=43.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHh---
Q 048179 248 ALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSK--- 324 (589)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 324 (589)
.....+.-.|+++.|++.+... ...+.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~-~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK-KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC-CC-cc-cccHHHHHHHHHHHhh
Confidence 3456677899999999988755 25566666655555433332 11111110 01 11 1224567777765
Q ss_pred cCCHHHHHHHHHhcC
Q 048179 325 CGVPSCARALFDQMQ 339 (589)
Q Consensus 325 ~g~~~~A~~~~~~~~ 339 (589)
..++..|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 577888888776663
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.53 E-value=3.1 Score=30.43 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 358 HGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 358 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
+.-+..+-++.+....+.|++......+.||-+.+++..|.++|+.++.+.+ +....|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666667777778899999999999999999999999999999987543 34556776654
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.40 E-value=6.8 Score=30.48 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHHcCCHH---HHHHHHHhcC-CCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 412 PTEKHYACMVDLLARAGEVE---EALKIVDSMS-TEP--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
|+..+--.+..++.+....+ +++.+++... ..| ....+-.|.-++.+.|+++.|.+..+.+++.+|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34444334444555544332 3444444431 123 23455666777888888888999888888888887655443
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.49 E-value=20 Score=33.13 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=104.9
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhc
Q 048179 315 GTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLF----LQMIETMVKPDHSTFASLLSALSH 390 (589)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~a~~~ 390 (589)
+.++..-|.+.+++++|.+++..- ...+.++|+...|.++. +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 466777788899999999876432 23455677766665554 555567888888887777777665
Q ss_pred CCcHH-HHHHHHHHHHH---hcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchH
Q 048179 391 SGLVE-EGRYWFDLMVS---KYK--IQPTEKHYACMVDLLARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSI 464 (589)
Q Consensus 391 ~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 464 (589)
...-+ .=..+.+.+.+ +++ -.-++.....+...|.+.+++.+|..-|- ...++++..+..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 54311 11223333221 112 23446677788899999999999998873 2333444666666655544432
Q ss_pred HHHHHHHHhccCCCCchhHHHH-HHHHHhCCChHHHHHHHHHHHh
Q 048179 465 GEKVAKKVLKLNPDDLGIHALV-SNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 465 a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
|.....+..- +--|.-.|+...|..+++...+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444443 3347788999999888777654
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.05 E-value=7.4 Score=40.73 Aligned_cols=53 Identities=17% Similarity=0.045 Sum_probs=44.1
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 387 ALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 387 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
.|...|+++.|+++-+++.. -.+.+..+|..|..+|...|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35678999999999998885 334448899999999999999999999999886
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.59 E-value=22 Score=32.64 Aligned_cols=168 Identities=10% Similarity=0.005 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHH----HHHHHhcCCCCCHHHHHHHHHHHh
Q 048179 214 VQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLEL----LMEMQSCGFEPDSVSLVSALLACA 289 (589)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 289 (589)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445677778888999999988654 23445677877666554 444455678888888887777765
Q ss_pred ccCchh-hHHHHHHHHh---h--c--CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CC
Q 048179 290 QIGFLK-LGKSIHGYTV---R--R--FDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIH---GH 358 (589)
Q Consensus 290 ~~~~~~-~a~~~~~~~~---~--~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 358 (589)
.....+ .-..+...++ . + ...++.+...+...|.+.|++.+|+.-|-.-...+...+..++--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533221 1122333333 1 1 2347888899999999999999999877533222344444444333332 32
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048179 359 GEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSK 407 (589)
Q Consensus 359 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 407 (589)
..++ |...-..++ .|.-.|+...|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2221 111111222 344568899999888877654
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.54 E-value=12 Score=29.56 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHHcCCHH---HHHHHHHhcC-CCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHH
Q 048179 412 PTEKHYACMVDLLARAGEVE---EALKIVDSMS-TEP--GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHAL 485 (589)
Q Consensus 412 p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 485 (589)
|+..+--.+..++.+....+ +++.+++... ..| .....-.|.-++.+.|++++|.+..+.+++.+|+|..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 44444444555555555433 3444554431 123 23345566678999999999999999999999988655443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.53 E-value=36 Score=38.03 Aligned_cols=142 Identities=10% Similarity=-0.007 Sum_probs=76.8
Q ss_pred HHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC----C----------------
Q 048179 283 SALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSR----D---------------- 342 (589)
Q Consensus 283 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---------------- 342 (589)
.++..+...+..+.+..+. .-.+.++...-.+..+|..+|++++|..+|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~----~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHH----HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHh----hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 3444455555555554432 223444544456667788888888888888776420 0
Q ss_pred ------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 048179 343 ------LISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDH--S--TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP 412 (589)
Q Consensus 343 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 412 (589)
..-|.-++..+.+++.++.++++-+..++...+-+. . .|..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 012444555666666666666666555543211111 1 3455666666677777776666554421 12
Q ss_pred ChhhHHHHHHHHHHcCCHH
Q 048179 413 TEKHYACMVDLLARAGEVE 431 (589)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~ 431 (589)
-......|+..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 2344555555555555443
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.47 E-value=6.1 Score=37.90 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCCChhhH
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVS----KYKIQPTEKHY 417 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 417 (589)
...++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666777888888888887777653 45677788888888888888888888877544 34777775543
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.32 E-value=5.9 Score=28.98 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHH
Q 048179 259 AGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVI 319 (589)
Q Consensus 259 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 319 (589)
.-+..+-++.+....+.|++......+.+|.+.+++..|..+++-+.........+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3456666677777778888888888888888888888888888888733333345555554
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.53 E-value=35 Score=33.31 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCCC----hh
Q 048179 346 WNVIIASYGIHGHGEEALSLFLQMIETMVKPDH-----STFASLLSALSHSGLVEEGRYWFDLMVSK-YKIQPT----EK 415 (589)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~----~~ 415 (589)
...+...+...|++.+|..++.++...-...+. ..+...+..|...+++..|..++.++... +...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355677888899999999999988653222221 35566677889999999999999887532 122222 34
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCCC----CChhHHHHHHH----HHHhcCCchHHHHHHHHHhccC-CCCchhHHHH
Q 048179 416 HYACMVDLLARAGEVEEALKIVDSMSTE----PGLAVWVALLS----GCHNHKKFSIGEKVAKKVLKLN-PDDLGIHALV 486 (589)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l 486 (589)
.+.+++..+...+++.+|-+.|.++... .|...|..++. +..-.+....-..+..+..... -.+...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5778889999999999998887776321 23333322221 1111111111122222222111 1234566777
Q ss_pred HHHHHhC--CChHHHHHHHH
Q 048179 487 SNFFAME--QKWEEVAGVRK 504 (589)
Q Consensus 487 ~~~~~~~--g~~~~a~~~~~ 504 (589)
..+|... .+|+.+.+.++
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHhchHhhhHHHHHHHH
Confidence 7777654 46666666554
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.39 E-value=8.2 Score=34.31 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=22.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048179 355 IHGHGEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 355 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 405 (589)
+.|+.++|++....-++.. +-|...-..++.-+|-.|+++.|.+-++...
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444445544444444432 2233333334444444455555544444443
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.05 E-value=6.6 Score=30.50 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048179 359 GEEALSLFLQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVD 422 (589)
Q Consensus 359 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 422 (589)
.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+..+.+. .+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33455566666677789999999999999999999999999999998754 344556777664
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.01 E-value=14 Score=41.40 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCC-CCc----hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048179 449 WVALLSGCHNHKKFSIGEKVAKKVLKLNP-DDL----GIHALVSNFFAMEQKWEEVAGVRKTMRK 508 (589)
Q Consensus 449 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 508 (589)
|.-++..+.+++.++.+.+..+.+++..+ ++. ..|..+-..+...|++++|...+-.+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 33444455555666666666655554332 221 1344455555556666666555554443
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.82 E-value=15 Score=26.71 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=45.8
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFA 382 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 382 (589)
+..+...|++++|..+.+...-||...|-++.. .+.|-.+++...+.++...| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667899999999998888899999987754 47788888888887877776 45544554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.04 E-value=16 Score=26.60 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=44.9
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048179 319 IDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPDHSTFA 382 (589)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 382 (589)
+..+...|++++|..+.+...-||...|-++.. .+.|-.+++...+.++...| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667899999999999988899999987754 46677777777777777666 45444443
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.57 E-value=3.2 Score=36.89 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=42.8
Q ss_pred HHHHHcCCHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 048179 422 DLLARAGEVEEALKIVDS-MSTEP-GLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDL 480 (589)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 480 (589)
..+.+.|.+++|++.... +..+| |...-..|+.-++..|++++|.+-++.+.+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 345678888888876655 34455 455556677778888888888888888888888643
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.15 E-value=34 Score=28.81 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHh--ccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCE
Q 048179 448 VWVALLSGCHNHKKFSIGEKVAKKVL--KLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKKVPGYSVVEVNGE 525 (589)
Q Consensus 448 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 525 (589)
.|-..+..| ..++...+..+|..+. +++-..+..|...+..+...|++.+|.++++.-++++-+|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P------------ 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP------------ 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS------------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------------
Confidence 344444443 2444668889998887 5667888999999999999999999999999887765443
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcccCC
Q 048179 526 LHAFIMEDKSHNQYEDIVYVLKKLYLEMRAISSWLQGH 563 (589)
Q Consensus 526 ~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 563 (589)
.+.+.........+|.+.+.+.+.+
T Consensus 149 -------------~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 149 -------------YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred -------------HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4556677788888888887743433
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.29 E-value=15 Score=28.58 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCCCChhHHHHHH
Q 048179 261 STLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLVLGTSVI 319 (589)
Q Consensus 261 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 319 (589)
+..+-++.+....+.|++......+.+|.+.+++..|..+++-+.....+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 45566667777778899999999999999999998888888888844444455565554
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.71 E-value=48 Score=29.32 Aligned_cols=208 Identities=10% Similarity=0.086 Sum_probs=108.1
Q ss_pred hHHHHhhhcCCChHHHHHHhccCCCCCcc----cHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHh
Q 048179 14 GRIIALYGGKNDIVSARKLFEELPLRGVD----TYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACV 87 (589)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~ 87 (589)
+..+...++.|+++....+++.-...+.. .++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 45566677889999999888875544322 233 34444555664 45555566666554421 113334444
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHHHhcCCCCcc-------------hHHHHHHHH
Q 048179 88 SLMDLKMGEEIWRKAVELGYGNDVFV--GSSMLNLYVKCGKMNEAMVAFEKMQRKDLV-------------CWSSMINGL 152 (589)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~ 152 (589)
..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-...+++.-..++.. ..+.+ ...
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L-~~A 155 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL-MDA 155 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH-HHH
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH-HHH
Confidence 556654 4445555665544321 122344455678888777777765443221 12222 223
Q ss_pred HhCCCccHHHHHHHHHHHC-CCCCChh---hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHhcC
Q 048179 153 VFNGQPREAVDAYKRMKKE-GIDADEV---VMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVK--VQTSLVDMYAKTG 226 (589)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~-~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 226 (589)
+..|+.+ +++.+.+. |..++.. -.+.+ ...+..++......+.+.+.+.|..++.. ...+.+...++.|
T Consensus 156 ~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 156 AEKGHVE----VLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHTCHH----HHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHcCCHH----HHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 3445543 34444443 4444321 22223 33334555555566667777777554432 1223444555667
Q ss_pred CHHHHHHHHh
Q 048179 227 HLDLASHVFK 236 (589)
Q Consensus 227 ~~~~A~~~~~ 236 (589)
+.+-+..+++
T Consensus 231 ~~~~v~~Ll~ 240 (285)
T 1wdy_A 231 HLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 7777766666
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.87 E-value=35 Score=27.32 Aligned_cols=49 Identities=2% Similarity=-0.042 Sum_probs=41.0
Q ss_pred HHHHHHHHhc--cCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048179 465 GEKVAKKVLK--LNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMKK 513 (589)
Q Consensus 465 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 513 (589)
+.++|..+.. ++-..+..|...+..+...|++.+|.++++.-++++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 7888888874 567788899999999999999999999999887765543
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.80 E-value=19 Score=35.07 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 381 FASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT--EKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 381 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
...+..-+.+.|+++.|.+.+.++.... ..+. .+.+-..++++...+++..+...++++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444445555555555555544321 1111 333444444444455555554444443
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.69 E-value=71 Score=30.42 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048179 214 VQTSLVDMYAKTGHLDLASHVFKNMSR 240 (589)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (589)
....|...|.+.|+.++..+++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888888888888888877654
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=70.12 E-value=33 Score=31.35 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=43.6
Q ss_pred HHhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048179 437 VDSMSTEPG--LAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSG 510 (589)
Q Consensus 437 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 510 (589)
|.....+|. ..++.+-+..+.+.+|+..|....++++++.|... ..++|.+++....+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444444553 44677778889999999999999999999998522 3456777777766543
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.61 E-value=15 Score=35.63 Aligned_cols=96 Identities=6% Similarity=-0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH--HH
Q 048179 314 LGTSVIDMYSKCGVPSCARALFDQMQS------RDLISWNVIIASYGIHGHGEEALSLFLQMIET---MVKPDHST--FA 382 (589)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t--~~ 382 (589)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-..++.+...+++..+...+.+.... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 345677888888888888888887753 22356677788888889999988888877542 32333221 11
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 048179 383 SLLSALSHSGLVEEGRYWFDLMVSKYK 409 (589)
Q Consensus 383 ~ll~a~~~~g~~~~a~~~~~~~~~~~~ 409 (589)
.-+..+...+++..|.+.|-++...+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 122335567899999988888776543
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.00 E-value=61 Score=28.58 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=28.5
Q ss_pred HHHHhcCCHHHHHHHHhhcC-C---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 048179 220 DMYAKTGHLDLASHVFKNMS-R---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPD 277 (589)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 277 (589)
...+..|+.+-...+++... . .+...++.+.. .+..+......++++.+.+.|..++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCC
Confidence 34445666666666665421 1 22222233332 2345555555566666666665554
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.66 E-value=50 Score=26.80 Aligned_cols=48 Identities=0% Similarity=-0.076 Sum_probs=39.9
Q ss_pred HHHHHHHHh--ccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 465 GEKVAKKVL--KLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 465 a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
...+|..+. +++-..+..|...+..+...|++.+|.++++.-++.+-+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 667787777 466778889999999999999999999999988876654
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.97 E-value=57 Score=27.15 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcH
Q 048179 115 SSMLNLYVKCGKMNEAMVAFEKMQRKDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSR 194 (589)
Q Consensus 115 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 194 (589)
...+..+.+.|..+....+.+.+..+|...-...+.++...+.. ++...+..+.. .++...-...+.++...++.+
T Consensus 32 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~ 107 (201)
T 3ltj_A 32 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDER 107 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH
Confidence 33333333333333333333334344444444444444444433 22333333322 234444444555555555433
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 048179 195 FGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQ 270 (589)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 270 (589)
....+.. +. -.++..+-...+.++.+.++.+....+.+.+.+++...-...+.++.+.|. .++...+..+.
T Consensus 108 ~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 108 AVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp GHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 2222222 11 134455555555555555544333333333333444333444444444443 33444444444
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.96 E-value=61 Score=27.76 Aligned_cols=82 Identities=13% Similarity=-0.004 Sum_probs=34.4
Q ss_pred HcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhCCCh
Q 048179 52 SRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFV--GSSMLNLYVKCGKM 127 (589)
Q Consensus 52 ~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~ 127 (589)
++.|+.+-+..+++.+.+.|..++... -.+.+..++..|+.+ +++.+++.|..++... ....+...+..|+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 92 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 444555555555554444443333221 112233333444443 3333344454333211 11223333445666
Q ss_pred HHHHHHHHhc
Q 048179 128 NEAMVAFEKM 137 (589)
Q Consensus 128 ~~A~~~~~~~ 137 (589)
+-+..+++..
T Consensus 93 ~~~~~Ll~~~ 102 (241)
T 1k1a_A 93 TCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHcC
Confidence 5555555544
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.81 E-value=1.2e+02 Score=30.90 Aligned_cols=332 Identities=9% Similarity=-0.031 Sum_probs=168.4
Q ss_pred hHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHH
Q 048179 14 GRIIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLK 93 (589)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 93 (589)
+.-+..+++.+++......+.. ++.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3345556667788888776766 44445555556667777788777777777766555 335566777777766555332
Q ss_pred H--HHHHHHHHHHhCC-----------CCChh-hHHHHHHHHHhCCChHHHHHHHHhcCCCCcc---hHHHHHHHHHhCC
Q 048179 94 M--GEEIWRKAVELGY-----------GNDVF-VGSSMLNLYVKCGKMNEAMVAFEKMQRKDLV---CWSSMINGLVFNG 156 (589)
Q Consensus 94 ~--a~~~~~~~~~~g~-----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 156 (589)
. ..+-++.+...|- +++.. ....++.++.. ...+....... .++.. .+...+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 2 2222222222221 11110 11122222211 11112222111 11111 11112222333 3
Q ss_pred CccHHHHHHHHHHHCCCCCChhhHHHHHH----HHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHH
Q 048179 157 QPREAVDAYKRMKKEGIDADEVVMMGLIQ----ACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLAS 232 (589)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (589)
+.+.|...+....... ..+......+-. .....+....+...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 7789999998886543 223333322222 2333443455555665544332 33333445555566789999999
Q ss_pred HHHhhcCCCC--eeh-HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHhhcCC
Q 048179 233 HVFKNMSRIN--IVT-WGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIGFLKLGKSIHGYTVRRFD 309 (589)
Q Consensus 233 ~~~~~~~~~~--~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 309 (589)
..|+.|.... ..- .-=+..++...|+.++|..+|..+... . +|-.++.+ .+.|..-... ....+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~~~------~~~~~ 372 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYELK------IDKAP 372 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCCCC------CCCCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCCCC------CCCCC
Confidence 9999998632 122 222445677899999999999998742 2 23222221 1222110000 00000
Q ss_pred C---Ch---hHHHHHHHHhHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048179 310 F---NL---VLGTSVIDMYSKCGVPSCARALFDQMQS-RDLISWNVIIASYGIHGHGEEALSLFLQ 368 (589)
Q Consensus 310 ~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (589)
+ .. .....-+..+...|....|...+..+.. .+......+.......|.++.++....+
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0 00 0112234456678999999888776653 3333333444445567777777655543
No 282
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=65.44 E-value=26 Score=29.18 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCCCChh-------HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHH
Q 048179 430 VEEALKIVDSMSTEPGLA-------VWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAG 501 (589)
Q Consensus 430 ~~~A~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 501 (589)
++.|+-+++.+..+-|.. .-...+..|.+.|.+++|.+++++.++-+|.+...-..|..+-.+...+....+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 566777777776543311 112334569999999999999999998887777666666666555554444443
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.22 E-value=61 Score=27.23 Aligned_cols=61 Identities=8% Similarity=0.004 Sum_probs=27.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHh
Q 048179 210 LDVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQS 271 (589)
Q Consensus 210 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 271 (589)
++..+-...+.++.+.|..+....+.+.+.+++...-...+.++.+.+. .++...+..+.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444555555555555544333333333333444444444444444443 344444444443
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.83 E-value=59 Score=26.89 Aligned_cols=151 Identities=9% Similarity=0.095 Sum_probs=72.8
Q ss_pred hhhcCCChHHHHHHhccCC-C---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccH--HHHHHHHhccCCH
Q 048179 19 LYGGKNDIVSARKLFEELP-L---RGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTF--TVALKACVSLMDL 92 (589)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~ 92 (589)
..+..|+.+....+++.-. . .|...++.|..+. +.|+ .++++.+.+.|..++.... .+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNND----IEIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3456788888888887654 2 2333344444433 4444 3455555566655544321 1233344455666
Q ss_pred HHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHHHhc-CC---CCcchHHHHHHHHHhCCCccHHHHHHH
Q 048179 93 KMGEEIWRKAVELGYGNDVFV--GSSMLNLYVKCGKMNEAMVAFEKM-QR---KDLVCWSSMINGLVFNGQPREAVDAYK 166 (589)
Q Consensus 93 ~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 166 (589)
+.+..+++. .+..++... ..+.+...++.|+.+-+..+++.- .. +|..-++.|..+.........-.++++
T Consensus 86 ~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 86 EILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 554444422 222222111 112334445667777777676655 22 233334444443322222333355666
Q ss_pred HHHHCCCCCCh
Q 048179 167 RMKKEGIDADE 177 (589)
Q Consensus 167 ~m~~~~~~p~~ 177 (589)
.+.+.|..++.
T Consensus 163 ~Ll~~ga~~~~ 173 (201)
T 3hra_A 163 LLMENGADQSI 173 (201)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHCCCCCCc
Confidence 66666655543
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.23 E-value=89 Score=29.23 Aligned_cols=242 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 048179 146 SSMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKT 225 (589)
Q Consensus 146 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (589)
..+|.-|...++.++|...++++......|.......-...=.+...-+.+-.++..+.. ++-+...+...+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CCHH-------------HHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048179 226 GHLD-------------LASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQIG 292 (589)
Q Consensus 226 g~~~-------------~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 292 (589)
.++. -|+.+.+.+..+. .+..+...-..+.+.+.++..... --.......+-+.+...+
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~------~l~~~~~~~~~~~~~~~l~~a~~~--L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNT------YIDSYKGTVDCVQARAALDKATVL--LSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSS------TTGGGC---CCHHHHHHHHHHHHH--HTC---------CCCCCC
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHH------HHHHHhhcccchHHHHHHHHHHHH--HhccchHHHHHHhcCCCC
Q ss_pred chhhHHHHHHHHhhcCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcC--CHHHHHHHHH
Q 048179 293 FLKLGKSIHGYTVRRFDFNLVLGTSVIDMYSKCGVPSCARALFDQMQSRDL---ISWNVIIASYGIHG--HGEEALSLFL 367 (589)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g--~~~~A~~~~~ 367 (589)
......++-..+ +.++.=|...|+.++|.++++++..|.- ....++..++-+.+ ..+...+++.
T Consensus 209 ~~~~veelkkki-----------~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~ 277 (358)
T 3eiq_C 209 GQQPVNHLVKEI-----------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLK 277 (358)
T ss_dssp SSSCHHHHHHHH-----------HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CCccHHHHHHHH-----------HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCcHH----HHHHHHHHHHHh
Q 048179 368 QMIETMVKPDHSTFASLLSALSHSGLVE----EGRYWFDLMVSK 407 (589)
Q Consensus 368 ~m~~~~~~p~~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~ 407 (589)
.+...|+-+.......+...+....+.. .|..++..+...
T Consensus 278 ~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 278 SLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 286
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.28 E-value=89 Score=25.89 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 048179 211 DVKVQTSLVDMYAKTGHLDLASHVFKNMSRINIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVSLVSALLACAQ 290 (589)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (589)
|..+....+..+.+.+..+....+.+.+..++...-...+.++...+.. ++...+..+.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3444444444444444433333334444344443333334444444433 23333333332 2344444444444444
Q ss_pred cCc
Q 048179 291 IGF 293 (589)
Q Consensus 291 ~~~ 293 (589)
.+.
T Consensus 103 ~~~ 105 (201)
T 3ltj_A 103 IGD 105 (201)
T ss_dssp HCC
T ss_pred hCc
Confidence 443
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.40 E-value=40 Score=29.53 Aligned_cols=52 Identities=19% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCCccc-------HHHHHHHHh--ccCCHHHHHHHHHHH
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPDSST-------FTVALKACV--SLMDLKMGEEIWRKA 102 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 102 (589)
.++.|+.+....+++.+.+.|..++... .+.+..++. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455666666666666655554444322 222333321 445555555555543
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.86 E-value=96 Score=26.31 Aligned_cols=109 Identities=14% Similarity=0.023 Sum_probs=52.2
Q ss_pred hhcCCChHHHHHHhccCCCCC---cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCccc---HHHHHHHHhccCCHH
Q 048179 20 YGGKNDIVSARKLFEELPLRG---VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSST---FTVALKACVSLMDLK 93 (589)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~ 93 (589)
.++.|+++....+++.-...+ ...++ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Confidence 456788888877777543322 22222 334445556543 4444445554433221 123344444555554
Q ss_pred HHHHHHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHHHhc
Q 048179 94 MGEEIWRKAVELGYGNDVFV--GSSMLNLYVKCGKMNEAMVAFEKM 137 (589)
Q Consensus 94 ~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 137 (589)
- .+.+++.|..++... ....+...+..|+.+-+..+++.-
T Consensus 91 ~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 91 M----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132 (240)
T ss_dssp H----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred H----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC
Confidence 3 344445555443221 112333444566666666665543
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.51 E-value=1e+02 Score=25.76 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048179 311 NLVLGTSVIDMYSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIE 371 (589)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 371 (589)
+..+-...+.++.+.|..+....+...+.+++...-...+.++...+. .++...+.++.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333334444444444443322223333333444444444444444443 334444444443
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.07 E-value=76 Score=28.35 Aligned_cols=199 Identities=11% Similarity=0.094 Sum_probs=97.7
Q ss_pred CChHHHHHHhccC--CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHH
Q 048179 24 NDIVSARKLFEEL--PLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRK 101 (589)
Q Consensus 24 g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 101 (589)
.+..+..+++..- ..+|..-++.|.. .+..|+.+- ++.+.+.|..++...-.+.+...+..|+.+-+. .
T Consensus 10 ~~~~~v~~lL~~~~~~~~d~~g~t~L~~-A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~ 80 (285)
T 3kea_A 10 WKSKQLKSFLSSKDTFKADVHGHSASYY-AIADNNVRL----VCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----I 80 (285)
T ss_dssp CCHHHHHHHHHSTTTTCCCTTSCCHHHH-HHHTTCHHH----HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----H
T ss_pred cCHHHHHHHHHhCCCCccCCCCCCHHHH-HHHcCCHHH----HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----H
Confidence 4445555555332 2334444444443 344566543 344444554444432234455566667765444 4
Q ss_pred HHHhCCCCChh---hHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 048179 102 AVELGYGNDVF---VGSSMLNLYVKCGKMNEAMVAFEKMQR---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDA 175 (589)
Q Consensus 102 ~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 175 (589)
+++.|..++.. -.+. +...+..|+.+-+..+++.-.. ++...|.+.+...+..|+.+ +++.+.+.|..+
T Consensus 81 Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~ 155 (285)
T 3kea_A 81 LLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPST 155 (285)
T ss_dssp HHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTT
T ss_pred HHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCcc
Confidence 44556554432 2233 3444567888777777766333 23333334444445566643 444455555444
Q ss_pred Chh-hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048179 176 DEV-VMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVKVQTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 176 ~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
... .-.+.+...+..|+.+.+..+++.-...... +..-.+..+...+..|+.+-+.-+++.
T Consensus 156 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 222 3345555566778877666666553332211 111112223444566777666666555
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.24 E-value=1.2e+02 Score=25.82 Aligned_cols=83 Identities=12% Similarity=-0.041 Sum_probs=47.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHHHhcCCC---CcchHHHHHHHHHhCCC
Q 048179 83 LKACVSLMDLKMGEEIWRKAVELGYGNDVFV--GSSMLNLYVKCGKMNEAMVAFEKMQRK---DLVCWSSMINGLVFNGQ 157 (589)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 157 (589)
+...++.|+.+....+++.+.+.|..++... ..+.+...+..|+.+-+..+++.-..+ |...++.+.. .+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL-ACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHcCC
Confidence 4455667888888888887777775544321 223445556678888777777654433 2222333333 345666
Q ss_pred ccHHHHHHH
Q 048179 158 PREAVDAYK 166 (589)
Q Consensus 158 ~~~A~~~~~ 166 (589)
.+-+..+++
T Consensus 92 ~~~~~~Ll~ 100 (241)
T 1k1a_A 92 PTCLRALLD 100 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444433
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.62 E-value=1.2e+02 Score=25.57 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=36.4
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhh---HHHHHHHHHhCC
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFV---GSSMLNLYVKCG 125 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g 125 (589)
.++.|+.+. ++.+.+.|..++... -.+.+..++..|+.+.+ +.+++.|..++... ....+...+..|
T Consensus 16 A~~~g~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYER----CRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHH----HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 344555443 344444554443321 12344455566665444 34444554332211 123344445567
Q ss_pred ChHHHHHHHHh
Q 048179 126 KMNEAMVAFEK 136 (589)
Q Consensus 126 ~~~~A~~~~~~ 136 (589)
+.+-+..+++.
T Consensus 88 ~~~~v~~Ll~~ 98 (240)
T 3eu9_A 88 HLSMVVQLMKY 98 (240)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 77666666654
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.14 E-value=57 Score=28.41 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=41.5
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHC--CCCC----CcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 048179 47 IIIAYSRKESPFEVLGLYNQMIKE--DVRP----DSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFVGSSMLNL 120 (589)
Q Consensus 47 li~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 120 (589)
-+..+....++++|.+++++..+. +.++ +.......++.-.....-..+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467788888999999888876542 2221 1122222233322222222333333333 21 2333444444555
Q ss_pred HHhCCChHHHHHHHH
Q 048179 121 YVKCGKMNEAMVAFE 135 (589)
Q Consensus 121 ~~~~g~~~~A~~~~~ 135 (589)
+.+.|+-++|.++|=
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 555666666655553
No 294
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=45.82 E-value=27 Score=17.32 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 048179 539 YEDIVYVLKKLYLEMRA 555 (589)
Q Consensus 539 ~~~~~~~~~~l~~~~~~ 555 (589)
..++|.+++++...+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888887764
No 295
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.79 E-value=1.4e+02 Score=25.28 Aligned_cols=151 Identities=16% Similarity=0.068 Sum_probs=68.1
Q ss_pred HHHhhhcCCChHHHHHHhcc-CC---CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCC----CCCCcccHHHHHHHHh
Q 048179 16 IIALYGGKNDIVSARKLFEE-LP---LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKED----VRPDSSTFTVALKACV 87 (589)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~ 87 (589)
.+..-++.|+.+....+++. -. .+|...++.|..+ +..|+.+-+..+++.-.... ...|..-.+ .+...+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~ 83 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA-ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAV 83 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-HHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHH
Confidence 34555677888888888875 22 2333344444433 44566555444444321110 001112222 333344
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhh---------------HHHHHHHHHhCCChHHHHHHHHhcCCC---CcchHHHHH
Q 048179 88 SLMDLKMGEEIWRKAVELGYGNDVFV---------------GSSMLNLYVKCGKMNEAMVAFEKMQRK---DLVCWSSMI 149 (589)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~g~~~~~~~---------------~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 149 (589)
..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-..+ |..-++.|
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L- 158 (232)
T 2rfa_A 84 INQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL- 158 (232)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-
T ss_pred HcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-
Confidence 556654 4444455565544321 122333334455655555555543222 22222222
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCC
Q 048179 150 NGLVFNGQPREAVDAYKRMKKEGI 173 (589)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~ 173 (589)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 223345555555555555555543
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.17 E-value=25 Score=29.76 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=18.2
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhC
Q 048179 455 GCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAME 493 (589)
Q Consensus 455 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 493 (589)
.|.+.|.+++|.+++++.++-+|.+...-..|..+-.+.
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 355555555555555555554433333333343333333
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.70 E-value=1.1e+02 Score=23.55 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCC--ccHHHHHHHHHHHCCCCC
Q 048179 115 SSMLNLYVKCGKMNEAMVAFEKMQRKD---LVCWSSMINGLVFNGQ--PREAVDAYKRMKKEGIDA 175 (589)
Q Consensus 115 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 175 (589)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456666777777777777777776552 1233334444433321 345666666666665443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.22 E-value=62 Score=31.97 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCC---hhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 048179 378 HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKI--QPT---EKHYACMVDLLARAGEVEEALKIVDSMS 441 (589)
Q Consensus 378 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (589)
...++.+++.|.+.+.++.|..+.....- .. .++ ..-+-.++..+.-.+++.+|.+.+...-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34677788888888888888888887641 11 111 1112245677778888888888877753
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.95 E-value=75 Score=31.42 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcCCCCC----h--hHH-HHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 048179 415 KHYACMVDLLARAGEVEEALKIVDSMSTEPG----L--AVW-VALLSGCHNHKKFSIGEKVAKKVLKLNPDD 479 (589)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 479 (589)
..++.+++.|...+.+++|..++.+...+.+ . ..| ..++..+..++++.+|.+.+..+++.-|.+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3455666666666666666666666543211 0 111 122333555566666666666666555543
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.53 E-value=1.7e+02 Score=26.58 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQSRDL---ISWNVIIASYGIHGH--GEEALSLFLQMIETMVKPDH 378 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 378 (589)
..++.=|...|+.++|.++++++..|.- ....++..++-+.++ .+....++..+.+.|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 6778888889999999999999987632 234444445544333 35566788888777755433
No 301
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=39.25 E-value=1.4e+02 Score=26.49 Aligned_cols=119 Identities=8% Similarity=-0.100 Sum_probs=41.2
Q ss_pred cchHhHHHHhhhcCCChHHHHHHhccC--------------CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCC
Q 048179 10 GNSVGRIIALYGGKNDIVSARKLFEEL--------------PLRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPD 75 (589)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 75 (589)
.....+.+...+..|+.++..++.... ...|..-++.|.. .+..|+. ++++.+.+.|..++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~-Aa~~g~~----~~v~~Ll~~g~~~~ 86 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHE-AAIHGHQ----LSLRNLISQGWAVN 86 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHH-HHHTTCH----HHHHHHHHTTCCSC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHH-HHHcCCH----HHHHHHHHCCCCCC
Confidence 445566777777888877777743322 1223334444444 3445654 34444555565554
Q ss_pred cccH--HHHHHHHhccCCHHHHHHHHHHHHHhCCCCChh---hHHHHHHHHHhCCChHHHHHHHHhcC
Q 048179 76 SSTF--TVALKACVSLMDLKMGEEIWRKAVELGYGNDVF---VGSSMLNLYVKCGKMNEAMVAFEKMQ 138 (589)
Q Consensus 76 ~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~ 138 (589)
.... .+.+...+..|+.+-+ +.+++.|..++.. -.+.| ...+..|..+-+..+++.-.
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~ 149 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCV----KILLKHGAQVNGVTADWHTPL-FNACVSGSWDCVNLLLQHGA 149 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTC
T ss_pred CcCCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCCHH-HHHHHcCHHHHHHHHHHCCC
Confidence 3221 1333444455665443 3444455544322 22333 33344566665555555433
No 302
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=38.95 E-value=87 Score=30.95 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=27.6
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCChHHHHHH
Q 048179 456 CHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKWEEVAGV 502 (589)
Q Consensus 456 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 502 (589)
.+-...++.|...|.++..+.|++...|+.||.+....|+.-+|.=.
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 34444555666666666666666666666666666666655555433
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.18 E-value=1.2e+02 Score=26.39 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=13.8
Q ss_pred HHHHHhCCCccHHHHHHHHHHH
Q 048179 149 INGLVFNGQPREAVDAYKRMKK 170 (589)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~ 170 (589)
++.+....++++|++++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666677777776666543
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.61 E-value=95 Score=24.78 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCC--ccHHHHHHHHHHHCCCCC
Q 048179 115 SSMLNLYVKCGKMNEAMVAFEKMQRKD---LVCWSSMINGLVFNGQ--PREAVDAYKRMKKEGIDA 175 (589)
Q Consensus 115 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 175 (589)
+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 446666666677777777777776542 2233333344433222 334556666666555443
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.27 E-value=1.2e+02 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=14.7
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048179 149 INGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQ 185 (589)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 185 (589)
+..+...+..-.|.++++.+.+.+...+..|....|.
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~ 64 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLR 64 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 3333333333444444444444433333333333333
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.13 E-value=1.5e+02 Score=22.72 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQSRDL---ISWNVIIASYGIHGH--GEEALSLFLQMIETMVKP 376 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 376 (589)
..++.=|...|+.++|.+.++++..|.- .....+..++-+.+. .+....++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 5677888888999999999998876522 233444444444432 355667777777666444
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.60 E-value=1.9e+02 Score=23.65 Aligned_cols=82 Identities=16% Similarity=0.061 Sum_probs=49.3
Q ss_pred hHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------------HHHHHHH
Q 048179 322 YSKCGVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-----------------HSTFASL 384 (589)
Q Consensus 322 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------------~~t~~~l 384 (589)
+.-.|.+..++-++...-.-+..-|.. -+|-+.+++..|+..++.+.+..+..| ...++.+
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 334677777766665543222222322 245677888888888888875444321 1345555
Q ss_pred HHHHhcCCcHHHHHHHHHHHH
Q 048179 385 LSALSHSGLVEEGRYWFDLMV 405 (589)
Q Consensus 385 l~a~~~~g~~~~a~~~~~~~~ 405 (589)
...|...|+.++|+..+..--
T Consensus 121 a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHhhhHhhhhc
Confidence 666777777777777776544
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.59 E-value=1.2e+02 Score=26.21 Aligned_cols=113 Identities=12% Similarity=-0.095 Sum_probs=59.7
Q ss_pred HhhhcCCChHHHHHHhcc----CCCCC-------cccHHHHHHHHH--cCCCchhHHHHHHHHHHCC---------CCC-
Q 048179 18 ALYGGKNDIVSARKLFEE----LPLRG-------VDTYNSIIIAYS--RKESPFEVLGLYNQMIKED---------VRP- 74 (589)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~----~~~~~-------~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~---------~~p- 74 (589)
...++.|+.+....+++. -...+ ..-++.|..+.. +.|+.+-+.-+++.-...+ +..
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 334567888876666662 22222 224555555543 5677776666666543211 111
Q ss_pred CcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhh----------------HHHHHHHHHhCCChHHHHHHHH
Q 048179 75 DSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFV----------------GSSMLNLYVKCGKMNEAMVAFE 135 (589)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~ 135 (589)
|..-. +.+...+..|+.+- .+.+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 90 d~~g~-t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 90 YYRGQ-TALHIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SEESB-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCC-CHHHHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11222 23444455677654 444555676655432 2334445566788887777777
No 309
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=34.40 E-value=2e+02 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=16.3
Q ss_pred HhHHHHhhhcCCChHHHHHHhccCCC
Q 048179 13 VGRIIALYGGKNDIVSARKLFEELPL 38 (589)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 38 (589)
..+.+...++.|+.+-+..+++.-..
T Consensus 25 g~t~L~~A~~~g~~~~v~~Ll~~g~~ 50 (223)
T 2f8y_A 25 GETALHLAARYSRSDAAKRLLEASAD 50 (223)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCchHHHHHHcCCHHHHHHHHHcCCC
Confidence 34445555677777777777765443
No 310
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.39 E-value=2.1e+02 Score=23.93 Aligned_cols=112 Identities=11% Similarity=0.036 Sum_probs=52.3
Q ss_pred HHHhhhcCCChHHHHHHhccCC----CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHhcc
Q 048179 16 IIALYGGKNDIVSARKLFEELP----LRGVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACVSL 89 (589)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 89 (589)
.+...++.|+++....+++.-+ .+|...++.|..+ +..|+. ++++.+.+.|..++... -.+.+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHT----EIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcH----HHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 3555566788888877776532 2333344444433 334443 34444555555444321 11223333444
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHHHh
Q 048179 90 MDLKMGEEIWRKAVELGYGNDVFV--GSSMLNLYVKCGKMNEAMVAFEK 136 (589)
Q Consensus 90 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 136 (589)
|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5544 3444445554433211 11223333455666655555554
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.68 E-value=3.3e+02 Score=25.83 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=12.0
Q ss_pred HHHhhhcCCChHHHHHHhccCC
Q 048179 16 IIALYGGKNDIVSARKLFEELP 37 (589)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~ 37 (589)
.+..-+..|+.+-+..+++.-.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCC
Confidence 3444455566666666665533
No 312
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.79 E-value=2.1e+02 Score=23.37 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=50.8
Q ss_pred HHHcCCHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhc--c---------------CCCCc-hhHHH
Q 048179 424 LARAGEVEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLK--L---------------NPDDL-GIHAL 485 (589)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---------------~p~~~-~~~~~ 485 (589)
+.-.|.+..++-++..... ....-|.+ -++.+.+++..|...++.+++ . +|.+. -.+..
T Consensus 43 LyyngEY~R~Lf~L~~lNT-~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNT-CTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCB-HHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcch-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 4456667766666655431 01111222 235566777777777777772 2 23232 35677
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 048179 486 VSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 486 l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
++.++...|+.+||++.+..--
T Consensus 120 ~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhhc
Confidence 8999999999999999987643
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.59 E-value=3.6e+02 Score=29.25 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=29.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 048179 384 LLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGEVEEALKIVDSM 440 (589)
Q Consensus 384 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (589)
++..|...|.++-+.++.. -++.++..--.+..+|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666666665544332 22223222234566777788888888888776
No 314
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.52 E-value=47 Score=21.48 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=14.3
Q ss_pred HhCCChHHHHHHHHHHHhCCCccC
Q 048179 491 AMEQKWEEVAGVRKTMRKSGMKKV 514 (589)
Q Consensus 491 ~~~g~~~~a~~~~~~m~~~g~~~~ 514 (589)
...|+.+.|...+-.|...+.++.
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 455667777776666655544443
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.49 E-value=2.4e+02 Score=24.21 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=41.4
Q ss_pred hHHHHHHHHHh--ccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048179 463 SIGEKVAKKVL--KLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKSGMK 512 (589)
Q Consensus 463 ~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 512 (589)
+....+|..+. +++-..+..|...+..+...|++.+|.++++.-++++-+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 45677888887 466778899999999999999999999999987775543
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.45 E-value=2.2e+02 Score=25.26 Aligned_cols=14 Identities=0% Similarity=-0.126 Sum_probs=5.9
Q ss_pred HhCCChHHHHHHHH
Q 048179 122 VKCGKMNEAMVAFE 135 (589)
Q Consensus 122 ~~~g~~~~A~~~~~ 135 (589)
+..|+.+-+..+++
T Consensus 70 ~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 70 ATLEDTKIVKILLF 83 (285)
T ss_dssp TTSSSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444444433
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.33 E-value=40 Score=24.50 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCHHH
Q 048179 56 SPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSLMDLKM 94 (589)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 94 (589)
+.+.|.+++..+..+| +..|..++.++...+....
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHH
Confidence 3445555555554443 2344444444444444333
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.86 E-value=2.2e+02 Score=23.87 Aligned_cols=19 Identities=11% Similarity=-0.157 Sum_probs=11.3
Q ss_pred HHHHHcCCCchhHHHHHHH
Q 048179 48 IIAYSRKESPFEVLGLYNQ 66 (589)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~ 66 (589)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666666654
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.22 E-value=1.3e+02 Score=24.07 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 048179 316 TSVIDMYSKCGVPSCARALFDQMQSRDL---ISWNVIIASYGIHGH--GEEALSLFLQMIETMVKP 376 (589)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 376 (589)
+.++.=|...|+.++|.+.++++..|.- ....++..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 6678888888999999999988876522 233444444444322 345666777777666443
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.17 E-value=1.6e+02 Score=23.19 Aligned_cols=39 Identities=5% Similarity=0.123 Sum_probs=16.3
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048179 148 MINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQA 186 (589)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 186 (589)
++..+...+..-.|.++++.+.+.+...+..|....|..
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 70 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNF 70 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHH
Confidence 333333344444444455544444333344443333333
No 321
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.09 E-value=2.5e+02 Score=23.63 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 048179 345 SWNVIIASYGIHGHGEEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP 412 (589)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 412 (589)
.|-..+..+ ..+...++.++|..|...|+--. +..|......+...|++.+|.++|+.-.+. +-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 444444433 23335577777777777766444 345566666667777777777777776665 4445
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.59 E-value=86 Score=22.67 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 048179 326 GVPSCARALFDQMQSRDLISWNVIIASYGIHGHGEEAL 363 (589)
Q Consensus 326 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 363 (589)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45788888888888888888888888887767755543
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.07 E-value=1.1e+02 Score=24.15 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC
Q 048179 92 LKMGEEIWRKAVELGYGNDVFVGSSMLNLYVKCG 125 (589)
Q Consensus 92 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 125 (589)
.-.|.++++.+.+.+...+..|--.-++.+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444443333333333344444444
No 324
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.00 E-value=1.7e+02 Score=22.63 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=3.8
Q ss_pred CCHHHHHHHH
Q 048179 226 GHLDLASHVF 235 (589)
Q Consensus 226 g~~~~A~~~~ 235 (589)
|+.+-+.-++
T Consensus 112 ~~~~~v~~Ll 121 (156)
T 1bd8_A 112 GHTAVVSFLA 121 (156)
T ss_dssp TCHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 3333333333
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.67 E-value=1.4e+02 Score=24.09 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=25.6
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCC
Q 048179 169 KKEGIDADEVVMMGLIQACADLGDSRFGLSVHGYSIRR--HLNLDVKVQTSLVDMYAKTGH 227 (589)
Q Consensus 169 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 227 (589)
.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345554332 223344444444445555555555554 444443333333344444443
No 326
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.55 E-value=2.2e+02 Score=24.01 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=7.1
Q ss_pred HhCCChHHHHHHHHh
Q 048179 122 VKCGKMNEAMVAFEK 136 (589)
Q Consensus 122 ~~~g~~~~A~~~~~~ 136 (589)
+..|+.+-+..+++.
T Consensus 85 ~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHTTCHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHhC
Confidence 344555544444443
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.26 E-value=2.6e+02 Score=23.75 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCh-hh-----HHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 048179 394 VEEGRYWFDLMVSKYKIQPTE-KH-----YACMVDLLARAGEVEEALKIVDSMSTE 443 (589)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~p~~-~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (589)
.+.|+.+|+.+.+...+.... .. --..+-.|.+.|.+++|.+++++.-.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 455666666666543221111 11 112344567778888888888775433
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.03 E-value=2.4e+02 Score=22.87 Aligned_cols=148 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCC---cccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhCC
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPD---SSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFV--GSSMLNLYVKCG 125 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g 125 (589)
.+..|+.+....++..-. ..++ ..-.+ .+...+..|+.+ +.+.+++.|..++... ..+.+...+..|
T Consensus 12 A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT---YQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT---CCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHcCC---CCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 355677666666554321 1222 22222 344444566654 4445555676554332 123344445678
Q ss_pred ChHHHHHHHHhcC-C---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCC---ChhhHHHHHHHHHccCCcHHHH
Q 048179 126 KMNEAMVAFEKMQ-R---KDLVCWSSMINGLVFNGQPREAVDAYKRMKKEG-IDA---DEVVMMGLIQACADLGDSRFGL 197 (589)
Q Consensus 126 ~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p---~~~t~~~ll~~~~~~~~~~~a~ 197 (589)
+.+-+..+++.-. . +|....+.+.. .+..|+.+ +++.+.+.| ..+ |..-.+.+..++........-.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIP-AAEKGHID----NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHH-HHHTTCHH----HHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHH-HHHcCCHH----HHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 8888777775443 1 22222233332 33455543 333344444 222 2222233333333322233335
Q ss_pred HHHHHHHHhcCCCc
Q 048179 198 SVHGYSIRRHLNLD 211 (589)
Q Consensus 198 ~~~~~~~~~~~~~~ 211 (589)
++.+.+++.|..++
T Consensus 159 ~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 159 DIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHCCCCCC
Confidence 56666666665443
No 329
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.18 E-value=4e+02 Score=25.15 Aligned_cols=327 Identities=11% Similarity=0.100 Sum_probs=141.7
Q ss_pred HHcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChh--hHHHHHHHHHhCCC
Q 048179 51 YSRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACVSLMDLKMGEEIWRKAVELGYGNDVF--VGSSMLNLYVKCGK 126 (589)
Q Consensus 51 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 126 (589)
.+..|+.+ +++.+.+.|..|+... ..+.+...+..|+.+.++.+ ++.|..++.. ...+.+...++.|+
T Consensus 21 Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 21 ASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 34455544 4444455565554332 22344555566776544444 4445443322 11233444556778
Q ss_pred hHHHHHHHHhcCCCC---cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhh--HHHHHHHHHccCCcHHHHHHHH
Q 048179 127 MNEAMVAFEKMQRKD---LVCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVV--MMGLIQACADLGDSRFGLSVHG 201 (589)
Q Consensus 127 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~ 201 (589)
.+-+..+++.-..++ ...++.|.. .+..|+.+-+..+ .+.+..++... -.+.+...+..|+.+.+..
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~~g~t~L~~-A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~--- 164 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATTAGHTPLHI-AAREGHVETVLAL----LEKEASQACMTKKGFTPLHVAAKYGKVRVAEL--- 164 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCHHHH-HHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH---
T ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHH-HHHcCCHHHHHHH----HhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH---
Confidence 777777776644332 222333332 3445555443333 33333222111 1123344455666554443
Q ss_pred HHHHhcCCCchH--HHHHHHHHHHhcCCHHHHHHHHhhcCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 048179 202 YSIRRHLNLDVK--VQTSLVDMYAKTGHLDLASHVFKNMSRINI---VTWGALISGFAQNGLAGSTLELLMEMQSCGFEP 276 (589)
Q Consensus 202 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 276 (589)
+++.|..++.. ...+.+...+..|+.+-...+++.-..++. ..++.+ ...+..|+.+-+ +.+.+.|..+
T Consensus 165 -Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~ 238 (437)
T 1n11_A 165 -LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVA----RSLLQYGGSA 238 (437)
T ss_dssp -HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHH----HHHHHTTCCT
T ss_pred -HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCC
Confidence 33444433221 112234445566777666666655433222 122222 333456654433 3333444333
Q ss_pred CHH---HHHHHHHHHhccCchhhHHHHHHHHhhcCCCChh--HHHHHHHHhHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 048179 277 DSV---SLVSALLACAQIGFLKLGKSIHGYTVRRFDFNLV--LGTSVIDMYSKCGVPSCARALFDQMQS---RDLISWNV 348 (589)
Q Consensus 277 ~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 348 (589)
+.. ..+ .+...+..|+.+....+++. +..++.. ...+.+...++.|..+-+..+++.-.. .+...++.
T Consensus 239 ~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 314 (437)
T 1n11_A 239 NAESVQGVT-PLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314 (437)
T ss_dssp TCCCTTCCC-HHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH
T ss_pred CCCCCCCCC-HHHHHHHCCCHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH
Confidence 221 111 22233345555544444332 2221110 011223344567777777777765432 22222223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh
Q 048179 349 IIASYGIHGHGEEALSLFLQMIETMVKPDHS---TFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTE 414 (589)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 414 (589)
+ ...+..|+.+- .+.+.+.|..++.. -.+.|-.| +..|..+-. +.+.+. |..|+.
T Consensus 315 L-~~A~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~iv----~~Ll~~-ga~~~~ 372 (437)
T 1n11_A 315 L-HVASHYGNIKL----VKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTDIV----TLLLKN-GASPNE 372 (437)
T ss_dssp H-HHHHHSSCSHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHH----HHHHHT-TCCSCC
T ss_pred H-HHHHHcCcHHH----HHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHHHH----HHHHHC-cCCCCC
Confidence 3 22345666553 33444556555432 12233333 345665443 333333 666653
No 330
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=26.91 E-value=4.7e+02 Score=25.88 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=42.2
Q ss_pred CCCChhHHHHHHHHHHhcCCchHHHHH----HHHHh-ccCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048179 442 TEPGLAVWVALLSGCHNHKKFSIGEKV----AKKVL-KLNPDDLGIHALVSNFFAMEQKWEEVAGVRKTMRKS 509 (589)
Q Consensus 442 ~~p~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 509 (589)
..+|......|-.-+..+|-.++-.++ ++.-+ +..|++......|-.-|.+.|++-+|.+++-.+-..
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 345666666666666676654433221 11111 234666677778888899999999999998888765
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.48 E-value=4.8e+02 Score=28.30 Aligned_cols=52 Identities=6% Similarity=-0.023 Sum_probs=38.0
Q ss_pred HHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHH
Q 048179 16 IIALYGGKNDIVSARKLFEELPLRGVDTYNSIIIAYSRKESPFEVLGLYNQMI 68 (589)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 68 (589)
++..+...|..+.|..+....+. +...--.+.++|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666777888888887777664 44333456677888999999999998753
No 332
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.37 E-value=1.1e+02 Score=31.61 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCchhHHHHHHHHHhCCCh
Q 048179 430 VEEALKIVDSMSTEPGLAVWVALLSGCHNHKKFSIGEKVAKKVLKLNPDDLGIHALVSNFFAMEQKW 496 (589)
Q Consensus 430 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 496 (589)
.+.|.++.+-|. ...............|++..|.++...++..+|+|..+...++++|.+.|.-
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 345556666664 2223333445567889999999999999999999999999999998887743
No 333
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.01 E-value=3.7e+02 Score=24.28 Aligned_cols=247 Identities=10% Similarity=0.072 Sum_probs=107.4
Q ss_pred hHHHHhhhcCCChHHHHHHhccCCCCCcc----cHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHh
Q 048179 14 GRIIALYGGKNDIVSARKLFEELPLRGVD----TYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACV 87 (589)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~ 87 (589)
+..+..-++.|+++-++.+++.-..+|.. -++.|..+ +..|+. ++.+.+.+.|..|+... ....+....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~----~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSRE----DIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH-HHcCCH----HHHHHHHHcCCchhhhccCCCchhHHHH
Confidence 44555567788888888888765444322 23444333 445554 34455556665554321 111122222
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHhcCCCC-------------cchHHHHHHH
Q 048179 88 SLMDLKMGEEIWRKAVELGYGND---VFVGSSMLNLYVKCGKMNEAMVAFEKMQRKD-------------LVCWSSMING 151 (589)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~ 151 (589)
..+..... ......+..++ ..-.+.+ ...+..|..+-+..+++.-...+ ..-++.|..
T Consensus 101 ~~~~~~~~----~~~~~~~~~~~~~d~~g~t~l-~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~- 174 (337)
T 4g8k_A 101 IAGSVKLL----KLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD- 174 (337)
T ss_dssp HHTCHHHH----HHHHTTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHH-
T ss_pred hcccchhh----HHhhhccchhhhhccCCCCHH-HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHH-
Confidence 22332222 22233333222 1122233 33355677776666665433211 111223333
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCChh---hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHhcC
Q 048179 152 LVFNGQPREAVDAYKRMKKEGIDADEV---VMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVK--VQTSLVDMYAKTG 226 (589)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 226 (589)
.++.|+.+-+..+++ +.|..++.. -.+.+..++.. +.......+.+.+++.|..++.. ...+.+...+..|
T Consensus 175 A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~ 250 (337)
T 4g8k_A 175 AAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250 (337)
T ss_dssp HHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh
Confidence 234555443322222 234444321 11222222211 22222334445556666544321 1122344556677
Q ss_pred CHHHHHHHHhhcC-C---CCeehHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH
Q 048179 227 HLDLASHVFKNMS-R---INIVTWGALISGFAQNGLAGSTLELLMEMQSCGFEPDSVS 280 (589)
Q Consensus 227 ~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 280 (589)
..+....+++.-. . .|..-++.|..+ ++.|+.+ +.+.+++.|..+|..+
T Consensus 251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 251 HLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD 303 (337)
T ss_dssp CHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC
T ss_pred hhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC
Confidence 7777777665321 1 222223333333 3455533 3444556676666543
No 334
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=25.48 E-value=54 Score=20.80 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=2.2
Q ss_pred HHhcCCchHHH
Q 048179 456 CHNHKKFSIGE 466 (589)
Q Consensus 456 ~~~~~~~~~a~ 466 (589)
+..+|+|++|.
T Consensus 50 LmNrG~Yq~Al 60 (61)
T 3ph0_C 50 LMNQGDYQRAL 60 (61)
T ss_dssp HHHC-------
T ss_pred HHccchHhHhh
Confidence 45566666553
No 335
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.41 E-value=3.4e+02 Score=23.69 Aligned_cols=18 Identities=11% Similarity=-0.180 Sum_probs=7.3
Q ss_pred CCCeehHHHHHHHHHhCC
Q 048179 240 RINIVTWGALISGFAQNG 257 (589)
Q Consensus 240 ~~~~~~~~~li~~~~~~g 257 (589)
.++...-...+.++.+.|
T Consensus 65 d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 65 DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp CSSHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 334333333344444444
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.77 E-value=1.1e+02 Score=24.67 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=36.1
Q ss_pred hhHHHHHHH-HHHCCCCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHh--CCCCChhhHHHHHHHHHhCCCh
Q 048179 58 FEVLGLYNQ-MIKEDVRPDSSTFTVALKACVSLMDLKMGEEIWRKAVEL--GYGNDVFVGSSMLNLYVKCGKM 127 (589)
Q Consensus 58 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 127 (589)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 334443333 344566654332 34455555555566677777777666 5445544444445555666643
No 337
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=23.60 E-value=1.5e+02 Score=20.32 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=20.4
Q ss_pred HHhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHH
Q 048179 31 KLFEELP--LRGVDTYNSIIIAYSRKESPFEVLGLYNQ 66 (589)
Q Consensus 31 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 66 (589)
.+++++| .+++.||+-+...+-+..-..+++.+.++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566665 56677777766655444444455554444
No 338
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.31 E-value=1.9e+02 Score=26.64 Aligned_cols=17 Identities=0% Similarity=-0.085 Sum_probs=8.9
Q ss_pred HHHhcCCHHHHHHHHhh
Q 048179 221 MYAKTGHLDLASHVFKN 237 (589)
Q Consensus 221 ~~~~~g~~~~A~~~~~~ 237 (589)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33445666555555543
No 339
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.09 E-value=2.2e+02 Score=22.38 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=25.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048179 369 MIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPTEKHYACMVDLLARAGE 429 (589)
Q Consensus 369 m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 429 (589)
+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..+..--++.+...|-
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 344555444322 22333333334445555666665544 323333333334455555554
No 340
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.68 E-value=3e+02 Score=22.17 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Q 048179 362 ALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT 413 (589)
Q Consensus 362 A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 413 (589)
+.++|..|...|+--. +..|......+...|++.+|.++|..-.+. +-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 5566777777665444 334555555666677777777777776664 44453
No 341
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.35 E-value=1.1e+02 Score=21.87 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 048179 482 IHALVSNFFAMEQKWEEVAGVRKTMR 507 (589)
Q Consensus 482 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 507 (589)
.+...+..+.+.|+|++|++..++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 44556777888888888877666543
No 342
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.13 E-value=4.3e+02 Score=23.75 Aligned_cols=39 Identities=5% Similarity=-0.047 Sum_probs=17.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Q 048179 367 LQMIETMVKPDHSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQPT 413 (589)
Q Consensus 367 ~~m~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 413 (589)
+-+++.|..+|..+ .| ...+..|+.+- .+.+.+. |-.||
T Consensus 290 ~~Ll~~GAd~n~~~--~L-~~A~~~~~~~i----v~~Ll~~-GA~~d 328 (337)
T 4g8k_A 290 ELLCKRGASTDCGD--LV-MTARRNYDHSL----VKVLLSH-GAKED 328 (337)
T ss_dssp HHHHTTSCSSTTCC--HH-HHHHHTTCHHH----HHHHHHT-TCCC-
T ss_pred HHHHHCCCCCCCCC--HH-HHHHHcCCHHH----HHHHHHC-cCCCC
Confidence 34455676666544 22 22334455443 3334433 55555
No 343
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.12 E-value=1.9e+02 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=11.8
Q ss_pred HHHHHHHHcCC-CchhHHHHHHHHHHCC
Q 048179 45 NSIIIAYSRKE-SPFEVLGLYNQMIKED 71 (589)
Q Consensus 45 ~~li~~~~~~g-~~~~a~~~~~~m~~~~ 71 (589)
..++..+...+ .+-.|.++++.+.+.+
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAG 48 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhC
Confidence 33444444443 4444555555554443
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.08 E-value=1.7e+02 Score=22.32 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 048179 147 SMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLGD 192 (589)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 192 (589)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555566667777777777776666666666666665555543
No 345
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.86 E-value=2.7e+02 Score=21.34 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=9.6
Q ss_pred ccHHHHHHHHHHHCCCCCChhhH
Q 048179 158 PREAVDAYKRMKKEGIDADEVVM 180 (589)
Q Consensus 158 ~~~A~~~~~~m~~~~~~p~~~t~ 180 (589)
.-.|.++++.+.+.+...+..|.
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTV 56 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATV 56 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHH
Confidence 34444444444444333333333
No 346
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.78 E-value=3.2e+02 Score=22.79 Aligned_cols=148 Identities=8% Similarity=-0.028 Sum_probs=67.4
Q ss_pred HHHHHcCCCchhHHHHHHHHHHCCCCCCccc--HHHHHHHHhccCCHHHHHHHHHHHHHhCCCC--------ChhhHHHH
Q 048179 48 IIAYSRKESPFEVLGLYNQMIKEDVRPDSST--FTVALKACVSLMDLKMGEEIWRKAVELGYGN--------DVFVGSSM 117 (589)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--------~~~~~~~l 117 (589)
+...++.|+.+....+++. .|..++... -.+.+...+..|+.+.+..+++ .|..+ |..-.+ .
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~t-~ 78 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLME----AAPELVFEPMTSELYEGQT-A 78 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTCC-H
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH----cCchhccccccccCCCCcC-H
Confidence 3344556665444444332 144433321 1223444455677665555444 33221 112223 3
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCc----------------chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhh--
Q 048179 118 LNLYVKCGKMNEAMVAFEKMQRKDL----------------VCWSSMINGLVFNGQPREAVDAYKRMKKEGIDADEVV-- 179 (589)
Q Consensus 118 i~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-- 179 (589)
+...+..|+.+-+..+++.-...+. .-++.|..+ +..|+. ++++.+.+.|..++...
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA-ACVGSE----EIVRLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCCCCCC
Confidence 3444566777777777766443322 122333322 334443 34444445555544221
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 048179 180 MMGLIQACADLGDSRFGLSVHGYSIRRHL 208 (589)
Q Consensus 180 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 208 (589)
-.+.+...+..|+.+.+..+++.+.+.|.
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 11234444555666666555565555553
No 347
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.65 E-value=4.1e+02 Score=23.29 Aligned_cols=116 Identities=9% Similarity=-0.082 Sum_probs=61.4
Q ss_pred hHHHHhhhcCCChHHHHHHhccCCCCC---cccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccH--HHHHHHHhc
Q 048179 14 GRIIALYGGKNDIVSARKLFEELPLRG---VDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTF--TVALKACVS 88 (589)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~ 88 (589)
.+.+...+..|+.+.+..+++.-...+ ..-++.|..+ +..|+.+ +++.+.+.|..++.... .+.+...+.
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~ 134 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA-CLGGHLS----CVKILLKHGAQVNGVTADWHTPLFNACV 134 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-HHCCcHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 344566677899998888887644333 3334444443 4556544 44455555655543321 123333445
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhh-HHHHHHHHHhCCChHHHHHHHHhcC
Q 048179 89 LMDLKMGEEIWRKAVELGYGNDVFV-GSSMLNLYVKCGKMNEAMVAFEKMQ 138 (589)
Q Consensus 89 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~ 138 (589)
.|+.+ +.+.+++.|..++... ..+.+...+..|..+-+..+++.-.
T Consensus 135 ~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 181 (285)
T 3d9h_A 135 SGSWD----CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 181 (285)
T ss_dssp HTCHH----HHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred cCHHH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 56654 4445556665443221 2233444455677776666665443
No 348
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.46 E-value=3.9e+02 Score=22.89 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 048179 360 EEALSLFLQMIETMVKPD-HSTFASLLSALSHSGLVEEGRYWFDLMVSKYKIQP 412 (589)
Q Consensus 360 ~~A~~~~~~m~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 412 (589)
+++..+|..|...|+--. +..|......+...|++.+|..+|+.-.+. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 355567777777665444 345555666666677777777777776665 4444
No 349
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.37 E-value=2.3e+02 Score=26.04 Aligned_cols=209 Identities=8% Similarity=-0.051 Sum_probs=113.1
Q ss_pred HhHHHHhhhcCCChHHHHHHhccCCCC---CcccHHHHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 048179 13 VGRIIALYGGKNDIVSARKLFEELPLR---GVDTYNSIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSL 89 (589)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 89 (589)
....+..-+..|+.+.+..+++.-..+ |..-++.|..+ +..|+.+ +++.+.+.|..++...-.+.+...+..
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA-CKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH-HHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 344556667789999999999874433 33334444443 4455543 444455555555543333455556677
Q ss_pred CCHHHHHHHHHHHHHhCCCCCh--------------------hhHHHHHHHHHhCC--ChHHHHHHHHhcCCC---Ccch
Q 048179 90 MDLKMGEEIWRKAVELGYGNDV--------------------FVGSSMLNLYVKCG--KMNEAMVAFEKMQRK---DLVC 144 (589)
Q Consensus 90 ~~~~~a~~~~~~~~~~g~~~~~--------------------~~~~~li~~~~~~g--~~~~A~~~~~~~~~~---~~~~ 144 (589)
|+.+.+..+++.....|..++. .-.+.| ...+..| ..+-+..+++.-..+ |..-
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g 173 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHHHHHHHHHHTCCTTCCCTTS
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHHHHHHHHHcCCCCcccCCCC
Confidence 8888888888776665654443 123344 4445667 777777777764433 3333
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCC-----CCh---hhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCchH--H
Q 048179 145 WSSMINGLVFNGQPREAVDAYKRMKKEGID-----ADE---VVMMGLIQACADLGDSRFGLSVHGYSIRRHLNLDVK--V 214 (589)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 214 (589)
++.|..+ +..|+.+-+.-++ +.|.. ++. .-. +.+...+..|+.+.+. .+++.|..++.. .
T Consensus 174 ~t~L~~A-~~~g~~~~v~~Ll----~~g~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~----~Ll~~gad~~~~d~~ 243 (364)
T 3ljn_A 174 ETPLMRA-MEFRNREALDLMM----DTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAM----RFVEMGIDVNMEDNE 243 (364)
T ss_dssp CCHHHHH-HHTTCHHHHHHHH----HHCSCSSSCCTTCCCTTCC-CTTHHHHTTTCHHHHH----HHHTTTCCTTCCCTT
T ss_pred CCHHHHH-HHcCCHHHHHHHH----hcccccccccccccCCCCC-cHHHHHHHcCCHHHHH----HHHHcCCCCCCCCCC
Confidence 4444443 4566654433333 33322 221 112 2233445667765444 444556544321 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh
Q 048179 215 QTSLVDMYAKTGHLDLASHVFKN 237 (589)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~ 237 (589)
..+-+...++.|+.+-+..+++.
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHHHc
Confidence 12234455667888887777775
No 350
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.09 E-value=1.9e+02 Score=22.67 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=9.6
Q ss_pred ccHHHHHHHHHHHCCCCCChhhH
Q 048179 158 PREAVDAYKRMKKEGIDADEVVM 180 (589)
Q Consensus 158 ~~~A~~~~~~m~~~~~~p~~~t~ 180 (589)
.-.|.++++.+.+.+...+..|.
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TV 55 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTV 55 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHH
Confidence 33444444444444333333333
No 351
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.03 E-value=1.6e+02 Score=22.95 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 048179 147 SMINGLVFNGQPREAVDAYKRMKKEGIDADEVVMMGLIQACADLG 191 (589)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 191 (589)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 345555555556667777777766655556555555555544444
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.50 E-value=1.5e+02 Score=22.72 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 048179 46 SIIIAYSRKESPFEVLGLYNQMIKEDVRPDSSTFTVALKACVSL 89 (589)
Q Consensus 46 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 89 (589)
.++..+...+.+-.|.++++.+.+.+...+..|..-.|+.+...
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 45555555666677777777777665444444444444444433
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.42 E-value=1.7e+02 Score=25.58 Aligned_cols=185 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred hHHHHhhhcCCChHHHHHHhccCC-----------CCCcccHHHHHHHHHc--CCCchhHHHHHHHH---------HHCC
Q 048179 14 GRIIALYGGKNDIVSARKLFEELP-----------LRGVDTYNSIIIAYSR--KESPFEVLGLYNQM---------IKED 71 (589)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m---------~~~~ 71 (589)
...+...++.|+.+....+++... ..|..-++.|..+... .|+.+-+.-+++.- ...+
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Q ss_pred CCCCcccHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCChhh----------------HHHHHHHHHhCCChHHHHHHHH
Q 048179 72 VRPDSSTFTVALKACVSLMDLKMGEEIWRKAVELGYGNDVFV----------------GSSMLNLYVKCGKMNEAMVAFE 135 (589)
Q Consensus 72 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~ 135 (589)
.......-.+.+...+..|+.+.++.+++. |..++... ..+-+...+..|+.+-+..+++
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVEN----GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHC----CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Q ss_pred ------hcCCCCcchHHHHHHHHHhCCCccHH----HHHHHHHHHCCCCCC---------hhhHHHHHHHHHccCCcHHH
Q 048179 136 ------KMQRKDLVCWSSMINGLVFNGQPREA----VDAYKRMKKEGIDAD---------EVVMMGLIQACADLGDSRFG 196 (589)
Q Consensus 136 ------~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~p~---------~~t~~~ll~~~~~~~~~~~a 196 (589)
....+|..-++.|..+.........- .++++.+.+.|..++ ...-.+.+...+..|+.+-+
T Consensus 170 ~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv 249 (273)
T 2pnn_A 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249 (273)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHH
Q ss_pred HHHHHH
Q 048179 197 LSVHGY 202 (589)
Q Consensus 197 ~~~~~~ 202 (589)
..+++.
T Consensus 250 ~~Ll~~ 255 (273)
T 2pnn_A 250 AYILQR 255 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHC
No 354
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.34 E-value=1.1e+02 Score=19.85 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048179 57 PFEVLGLYNQMIKEDVRPDSSTFTVALKAC 86 (589)
Q Consensus 57 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 86 (589)
.++|.+.|.+|++..-.+..-||.-+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467888888887664445566888888777
Done!