BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048180
(824 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506
+V ++L GN L ++ LT L L GN L L N F+ NLK L L + +
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122
Query: 507 ILPKXXXXXXXXXXXXXQNCIYLTCLPS--LAELVELMVLDVSGSGIAEFPDGM-NHLTK 563
LP L LP +L L LD+S + + P+G+ + LT+
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 564 LLFLNLSRTRVRNFPLHLVTSLHNLQ 589
L L L + ++++ P + L +LQ
Sbjct: 183 LKDLRLYQNQLKSVPDGVFDRLTSLQ 208
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 473 LFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKXXXXXXXXXXXXXQNCIYLTCL 532
L+L N + +L+ F+S NLK L L +G LP LT L
Sbjct: 45 LYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 533 PSLA--ELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQE 590
PS LV L L + + + E P G+ LT L L L + ++++ P L +L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 591 FSMIGCDLLCLPRSLM 606
+ G C R +M
Sbjct: 164 AYLFGNPWDCECRDIM 179
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 451 VSLMGNNLRELR---TCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGI 507
+ L NNL LR T L +L L N L+ + ++ F PNL+ L+LS +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 508 LPKX--XXXXXXXXXXXXQNCIYLTCLPSLAELVELMVLDVSGSGIAEFP-----DGMNH 560
L + N I + + ++ +L L +S + I+ FP DG N
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NK 161
Query: 561 LTKLLFLNLSRTRVRNFPL 579
L KL+ L+LS +++ PL
Sbjct: 162 LPKLMLLDLSSNKLKKLPL 180
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506
+V ++L GN L ++ LT L L GN L L N F+ NLK L L + +
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122
Query: 507 ILPKXXXXXXXXXXXXXQNCIYLTCLPS--LAELVELMVLDVSGSGIAEFPDGM-NHLTK 563
LP L LP +L L LD+ + + P+G+ + LT+
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 564 LLFLNLSRTRVRNFP 578
L L+L+ ++++ P
Sbjct: 183 LKQLSLNDNQLKSVP 197
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 470 LTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKXXXXXXXXXXXXXQNCIYL 529
LT L+L GN L L N FN +L LNLS + LP N L
Sbjct: 54 LTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
Query: 530 TCLPS--LAELVELMVLDVSGSGIAEFPDGM-NHLTKLLFLNL 569
LP +L +L L + + + PDG+ + LT L ++ L
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 36/214 (16%)
Query: 446 GDVERVSLMGNNLRELRTCPM--FCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDT 503
D E++ L L L KLT L L N L L F+ L L L++
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93
Query: 504 SMGILPKXXXXXXXXXXXXXQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGM-NHLT 562
+ LP L L +L L + G+ + P G+ + LT
Sbjct: 94 QLASLP----------------------LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 563 KLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRN 622
KL L L+ ++++ P L NLQ S+ L +P + AF + + KL+
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-------HGAF-DRLGKLQT 183
Query: 623 LNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVG 656
+ +F F + Y+S W+ S K G
Sbjct: 184 ITLFGNQFDCSRCETLYLS--QWIRENSNKVKDG 215
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 34/188 (18%)
Query: 446 GDVERVSLMGNNLRELRTCPM--FCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDT 503
D E++ L L L KLT L L N L L F+ L L L++
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93
Query: 504 SMGILPKXXXXXXXXXXXXXQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGM-NHLT 562
+ LP L L +L L + G+ + P G+ + LT
Sbjct: 94 QLASLP----------------------LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 563 KLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRN 622
KL L L+ ++++ P L NLQ S+ L +P + AF + + KL+
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-------HGAF-DRLGKLQT 183
Query: 623 LNVFDFTF 630
+ +F F
Sbjct: 184 ITLFGNQF 191
>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|B Chain B, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|C Chain C, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|D Chain D, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|E Chain E, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
Length = 262
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 64 TVDRQYQQGELTRICRII----QQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAH 119
T++ EL R C II + I+ +V N+I+ Y +++ +CG +GK E
Sbjct: 45 TLNYXSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEXVG 104
Query: 120 VYNRIL 125
N+I+
Sbjct: 105 SENKIV 110
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 469 KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSD-TSMGILPKXXXXXXXXXXXXXQNCI 527
KL L+L+ NP++ + + FN P+L+ L+L + + + +
Sbjct: 108 KLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC 166
Query: 528 YLTCLPSLAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLH 586
L +P+L LV L L++SG+ + P LT L L L +V + L
Sbjct: 167 NLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 587 NLQEFSMIGCDLLCLPRSL 605
+L+E ++ +L+ LP L
Sbjct: 227 SLEELNLSHNNLMSLPHDL 245
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 541 LMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600
L LD+S + + P L L L++S R+ + PL + L LQE + G +L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 601 LPRSLM 606
LP L+
Sbjct: 139 LPPGLL 144
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 541 LMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600
L LD+S + + P L L L++S R+ + PL + L LQE + G +L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 601 LPRSLM 606
LP L+
Sbjct: 139 LPPGLL 144
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 541 LMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600
L LD+S + + P L L L++S R+ + PL + L LQE + G +L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 601 LPRSLM 606
LP L+
Sbjct: 139 LPPGLL 144
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 536 AELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIG 595
L L LD+S + + P L L L++S R+ + PL + L LQE + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 CDLLCLPRSLM 606
+L LP L+
Sbjct: 134 NELKTLPPGLL 144
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 541 LMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600
L LD+S + + P L L L++S R+ + PL + L LQE + G +L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 601 LPRSLM 606
LP L+
Sbjct: 139 LPPGLL 144
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 541 LMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600
L LD+S + + P L L L++S R+ + PL + L LQE + G +L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 601 LPRSLM 606
LP L+
Sbjct: 139 LPPGLL 144
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 536 AELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIG 595
L L LD+S + + P L L L++S R+ + PL + L LQE + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 CDLLCLPRSLM 606
+L LP L+
Sbjct: 134 NELKTLPPGLL 144
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 536 AELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIG 595
L L LD+S + + P L L L++S R+ + PL + L LQE + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 CDLLCLPRSLM 606
+L LP L+
Sbjct: 134 NELKTLPPGLL 144
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 536 AELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIG 595
L L LD+S + + P L L L++S R+ + PL + L LQE + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 CDLLCLPRSLM 606
+L LP L+
Sbjct: 134 NELKTLPPGLL 144
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 536 AELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIG 595
L L LD+S + + P L L L++S R+ + PL + L LQE + G
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 596 CDLLCLPRSLM 606
+L LP L+
Sbjct: 135 NELKTLPPGLL 145
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 469 KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSD-TSMGILPKXXXXXXXXXXXXXQNCI 527
KL L+L+ NP++ + + FN P+L+ L+L + + + +
Sbjct: 108 KLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC 166
Query: 528 YLTCLPSLAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLH 586
L +P+L LV L L++SG+ + P LT L L L +V + L
Sbjct: 167 NLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 587 NLQEFSMIGCDLLCLPRSL 605
+L+E ++ +L+ LP L
Sbjct: 227 SLEELNLSHNNLMSLPHDL 245
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 529 LTCLPSLAELVELMVLDVSGSGIAEFPDGMNH-LTKLLFLNLSRTRVRNFPLHLVTSLHN 587
LT +PS + LD+ + ++ P H LTKL L L+ +++ P + L N
Sbjct: 28 LTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 588 LQEFSMIGCDLLCLPRSLMQE--DYAAFIEDVRKLRNL--NVFD----FTFVSL 633
L+ + L LP + + + A D +L++L VFD T++SL
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,150,673
Number of Sequences: 62578
Number of extensions: 936950
Number of successful extensions: 1962
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 36
length of query: 824
length of database: 14,973,337
effective HSP length: 107
effective length of query: 717
effective length of database: 8,277,491
effective search space: 5934961047
effective search space used: 5934961047
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)