Query 048180
Match_columns 824
No_of_seqs 444 out of 4203
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-87 3E-92 779.8 36.2 550 2-573 65-653 (889)
2 PLN03210 Resistant to P. syrin 100.0 2E-67 4.3E-72 646.6 48.8 653 74-821 186-903 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.2E-44 6.9E-49 379.5 19.9 265 98-373 17-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 8E-24 1.7E-28 261.5 20.2 345 446-821 93-462 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.9E-23 4E-28 258.2 20.4 351 445-821 117-485 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.1E-25 6.8E-30 233.2 -5.1 356 428-822 36-397 (1255)
7 KOG4194 Membrane glycoprotein 99.9 9.2E-23 2E-27 213.8 2.7 336 447-820 103-448 (873)
8 PLN03210 Resistant to P. syrin 99.9 2.1E-20 4.5E-25 231.2 22.1 314 444-805 587-911 (1153)
9 KOG4194 Membrane glycoprotein 99.8 6.6E-21 1.4E-25 200.0 7.6 338 444-821 76-426 (873)
10 KOG0444 Cytoskeletal regulator 99.8 7.6E-22 1.6E-26 208.0 -2.3 349 446-821 7-372 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 1.8E-21 4E-26 195.7 -9.8 341 447-821 161-538 (565)
12 KOG0618 Serine/threonine phosp 99.7 9.4E-20 2E-24 201.7 -2.5 343 448-822 47-487 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 1E-19 2.2E-24 183.2 -11.7 237 448-716 47-308 (565)
14 KOG0618 Serine/threonine phosp 99.7 2.1E-18 4.5E-23 191.2 -2.8 342 448-820 23-439 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 8.1E-15 1.8E-19 168.5 15.3 156 448-638 203-359 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 4.6E-15 9.9E-20 170.5 13.3 258 468-801 201-458 (788)
17 KOG0617 Ras suppressor protein 99.6 1.3E-16 2.8E-21 142.7 -3.6 167 458-640 23-192 (264)
18 KOG4658 Apoptotic ATPase [Sign 99.5 2.3E-14 5E-19 168.4 9.3 321 458-806 513-848 (889)
19 PRK15370 E3 ubiquitin-protein 99.4 2.5E-13 5.4E-18 157.4 11.3 160 447-636 179-340 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.2E-17 152.3 12.2 189 433-655 187-376 (754)
21 KOG0617 Ras suppressor protein 99.4 1.3E-14 2.7E-19 130.1 -4.2 156 444-602 31-189 (264)
22 PRK04841 transcriptional regul 99.3 1.5E-10 3.3E-15 142.7 23.0 278 98-423 30-332 (903)
23 KOG4237 Extracellular matrix p 99.2 8.1E-13 1.7E-17 133.9 -2.5 126 471-597 70-199 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 3.4E-11 7.4E-16 129.4 7.4 140 488-634 18-178 (319)
25 TIGR03015 pepcterm_ATPase puta 99.1 8.1E-09 1.7E-13 107.9 23.1 182 99-287 42-242 (269)
26 KOG0532 Leucine-rich repeat (L 99.1 1.4E-11 3E-16 130.6 -1.5 197 429-643 55-256 (722)
27 cd00116 LRR_RI Leucine-rich re 99.1 1.6E-10 3.5E-15 124.2 6.0 163 464-634 19-206 (319)
28 PF05729 NACHT: NACHT domain 99.0 3.5E-09 7.6E-14 101.7 12.4 142 101-251 1-163 (166)
29 PRK00411 cdc6 cell division co 99.0 3.1E-07 6.7E-12 101.7 27.7 298 72-401 30-357 (394)
30 KOG4237 Extracellular matrix p 98.9 9.7E-11 2.1E-15 119.1 -3.6 94 430-525 52-149 (498)
31 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.3E-14 101.9 5.3 130 490-629 16-148 (175)
32 TIGR02928 orc1/cdc6 family rep 98.8 2.6E-06 5.5E-11 93.4 27.4 273 99-401 39-349 (365)
33 TIGR00635 ruvB Holliday juncti 98.8 4.2E-07 9.2E-12 96.7 20.6 255 99-401 29-288 (305)
34 PF14580 LRR_9: Leucine-rich r 98.8 6E-09 1.3E-13 98.7 5.5 136 503-651 7-145 (175)
35 PRK00080 ruvB Holliday junctio 98.8 5.4E-07 1.2E-11 96.6 20.9 256 98-401 49-309 (328)
36 COG2909 MalT ATP-dependent tra 98.8 3.2E-07 7E-12 103.3 19.2 279 98-425 35-340 (894)
37 PRK06893 DNA replication initi 98.8 3.8E-08 8.3E-13 99.3 10.6 145 101-281 40-201 (229)
38 KOG0532 Leucine-rich repeat (L 98.8 3.2E-10 6.9E-15 120.5 -4.8 153 446-604 98-252 (722)
39 PF01637 Arch_ATPase: Archaeal 98.7 7.8E-08 1.7E-12 98.1 12.0 191 76-282 3-233 (234)
40 KOG3207 Beta-tubulin folding c 98.7 3.7E-09 8.1E-14 109.3 0.0 180 445-634 145-339 (505)
41 KOG1259 Nischarin, modulator o 98.7 3.7E-09 8.1E-14 103.7 -0.2 131 493-636 284-414 (490)
42 KOG3207 Beta-tubulin folding c 98.7 4.4E-09 9.6E-14 108.7 0.2 214 536-801 118-339 (505)
43 COG2256 MGS1 ATPase related to 98.6 7.5E-07 1.6E-11 92.2 15.8 154 97-280 45-209 (436)
44 KOG1259 Nischarin, modulator o 98.6 8.6E-09 1.9E-13 101.2 -1.0 136 464-604 280-417 (490)
45 KOG4341 F-box protein containi 98.6 3.4E-09 7.4E-14 109.0 -4.2 135 682-822 293-437 (483)
46 COG4886 Leucine-rich repeat (L 98.5 7.8E-08 1.7E-12 106.5 5.9 188 472-714 97-286 (394)
47 cd01128 rho_factor Transcripti 98.5 1.5E-07 3.4E-12 95.0 6.7 95 100-197 16-115 (249)
48 PRK09376 rho transcription ter 98.5 4E-07 8.7E-12 95.6 9.7 92 101-197 170-268 (416)
49 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.3E-12 105.5 5.2 174 446-636 116-292 (394)
50 KOG2120 SCF ubiquitin ligase, 98.5 9.6E-09 2.1E-13 101.0 -3.8 139 616-773 229-373 (419)
51 PRK13342 recombination factor 98.4 1.7E-06 3.7E-11 95.7 12.5 160 98-287 34-200 (413)
52 KOG4341 F-box protein containi 98.4 2.8E-08 6.1E-13 102.4 -2.8 135 682-819 319-460 (483)
53 PF13401 AAA_22: AAA domain; P 98.4 1.7E-06 3.8E-11 79.2 9.3 117 100-220 4-125 (131)
54 PF13173 AAA_14: AAA domain 98.3 1.2E-06 2.6E-11 79.8 6.3 118 100-243 2-127 (128)
55 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.3E-06 1.1E-10 84.1 10.9 151 99-285 37-203 (226)
56 PF13855 LRR_8: Leucine rich r 98.2 9.7E-07 2.1E-11 68.5 3.9 59 539-597 1-60 (61)
57 KOG1909 Ran GTPase-activating 98.2 6.7E-07 1.4E-11 90.5 2.5 38 466-503 28-68 (382)
58 TIGR00767 rho transcription te 98.2 3.9E-06 8.4E-11 88.9 8.2 94 101-197 169-267 (415)
59 PRK08727 hypothetical protein; 98.2 1.4E-05 3.1E-10 80.8 12.1 144 101-280 42-201 (233)
60 PLN03150 hypothetical protein; 98.2 4E-06 8.6E-11 97.5 8.5 102 495-597 420-526 (623)
61 KOG2028 ATPase related to the 98.1 1.3E-05 2.8E-10 81.4 10.3 130 96-251 158-294 (554)
62 PLN03150 hypothetical protein; 98.1 4.3E-06 9.2E-11 97.3 7.9 80 518-597 420-501 (623)
63 PTZ00112 origin recognition co 98.1 0.00013 2.8E-09 83.5 18.9 184 100-288 781-987 (1164)
64 PRK09087 hypothetical protein; 98.1 1.3E-05 2.9E-10 80.4 10.1 138 100-282 44-194 (226)
65 PF05496 RuvB_N: Holliday junc 98.1 2.3E-05 5E-10 76.1 11.0 149 98-283 48-221 (233)
66 PRK05564 DNA polymerase III su 98.1 7.2E-05 1.6E-09 79.7 16.1 155 100-282 26-189 (313)
67 COG3903 Predicted ATPase [Gene 98.1 1.1E-05 2.4E-10 84.4 9.0 292 98-421 12-312 (414)
68 PRK08084 DNA replication initi 98.1 3E-05 6.6E-10 78.6 11.8 145 100-280 45-206 (235)
69 PF13855 LRR_8: Leucine rich r 98.1 3E-06 6.5E-11 65.7 3.5 57 469-526 2-59 (61)
70 COG1474 CDC6 Cdc6-related prot 98.0 0.00061 1.3E-08 73.2 21.4 175 103-284 45-239 (366)
71 KOG2120 SCF ubiquitin ligase, 98.0 5.3E-07 1.1E-11 89.0 -2.0 183 586-797 185-373 (419)
72 PRK05642 DNA replication initi 98.0 4.1E-05 8.8E-10 77.5 11.5 145 101-281 46-206 (234)
73 PRK04195 replication factor C 98.0 0.00027 5.9E-09 79.9 19.1 160 100-288 39-207 (482)
74 PF00308 Bac_DnaA: Bacterial d 98.0 0.00015 3.3E-09 72.5 14.6 154 99-277 33-202 (219)
75 KOG0531 Protein phosphatase 1, 98.0 1.4E-06 3.1E-11 96.7 -0.0 109 489-600 91-200 (414)
76 TIGR02903 spore_lon_C ATP-depe 98.0 0.00013 2.8E-09 84.3 15.8 183 99-286 174-398 (615)
77 PRK14961 DNA polymerase III su 98.0 0.00026 5.7E-09 76.8 17.3 194 73-284 17-221 (363)
78 KOG3665 ZYG-1-like serine/thre 98.0 4.9E-06 1.1E-10 96.4 4.1 147 446-594 122-283 (699)
79 PRK06645 DNA polymerase III su 98.0 0.00014 3.1E-09 81.1 15.2 196 72-282 21-228 (507)
80 cd00009 AAA The AAA+ (ATPases 97.9 6.7E-05 1.4E-09 70.0 10.8 104 99-222 18-131 (151)
81 PRK14087 dnaA chromosomal repl 97.9 9.6E-05 2.1E-09 82.1 13.0 165 101-286 142-322 (450)
82 PRK15386 type III secretion pr 97.9 1.9E-05 4E-10 84.2 6.9 142 615-797 46-187 (426)
83 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.3E-11 96.4 -1.3 130 491-637 70-202 (414)
84 PRK13341 recombination factor 97.9 7.1E-05 1.5E-09 87.3 12.2 151 98-278 50-212 (725)
85 PRK07003 DNA polymerase III su 97.9 0.00053 1.1E-08 78.3 18.4 195 73-285 17-223 (830)
86 KOG1859 Leucine-rich repeat pr 97.9 6.4E-07 1.4E-11 98.4 -4.7 126 495-634 166-292 (1096)
87 KOG1909 Ran GTPase-activating 97.8 3.7E-06 7.9E-11 85.3 0.3 172 445-634 29-226 (382)
88 PF13191 AAA_16: AAA ATPase do 97.8 6.1E-05 1.3E-09 73.6 8.2 49 74-126 2-50 (185)
89 PRK14949 DNA polymerase III su 97.8 0.00016 3.4E-09 84.1 12.5 98 183-283 117-220 (944)
90 KOG1859 Leucine-rich repeat pr 97.8 7.5E-07 1.6E-11 97.8 -5.9 106 489-598 183-291 (1096)
91 PRK12323 DNA polymerase III su 97.8 0.00023 5E-09 80.0 13.2 197 73-283 17-225 (700)
92 PRK14960 DNA polymerase III su 97.8 0.00033 7.1E-09 79.0 14.3 193 73-283 16-219 (702)
93 COG2255 RuvB Holliday junction 97.8 0.0018 4E-08 64.4 17.6 153 97-286 49-226 (332)
94 PRK14956 DNA polymerase III su 97.8 0.00021 4.5E-09 78.3 12.1 190 72-280 18-219 (484)
95 PRK14963 DNA polymerase III su 97.8 0.00065 1.4E-08 76.3 16.4 169 100-281 36-215 (504)
96 TIGR00362 DnaA chromosomal rep 97.8 0.0012 2.6E-08 73.1 18.4 181 100-305 136-337 (405)
97 TIGR01242 26Sp45 26S proteasom 97.7 0.00018 3.8E-09 78.4 11.4 149 99-277 155-328 (364)
98 PLN03025 replication factor C 97.7 0.00067 1.5E-08 72.4 15.6 157 99-279 33-196 (319)
99 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 54.8 3.7 40 539-578 1-40 (44)
100 KOG2982 Uncharacterized conser 97.7 6.6E-06 1.4E-10 81.4 -0.0 36 561-597 120-157 (418)
101 PF14516 AAA_35: AAA-like doma 97.7 0.0068 1.5E-07 64.9 22.7 178 100-288 31-244 (331)
102 PRK12402 replication factor C 97.7 0.00076 1.7E-08 72.9 15.7 175 99-282 35-225 (337)
103 PRK15386 type III secretion pr 97.7 0.00015 3.4E-09 77.4 9.2 77 446-533 52-131 (426)
104 PRK14957 DNA polymerase III su 97.7 0.00077 1.7E-08 75.9 14.9 182 73-285 17-223 (546)
105 PTZ00202 tuzin; Provisional 97.6 0.0013 2.9E-08 70.0 14.9 159 73-248 263-431 (550)
106 PRK14088 dnaA chromosomal repl 97.6 0.00066 1.4E-08 75.4 13.6 153 100-277 130-299 (440)
107 TIGR02397 dnaX_nterm DNA polym 97.6 0.0019 4.1E-08 70.4 17.1 100 184-286 116-221 (355)
108 PRK14955 DNA polymerase III su 97.6 0.0012 2.6E-08 72.6 15.4 176 101-282 39-227 (397)
109 PRK06620 hypothetical protein; 97.6 0.00031 6.6E-09 69.9 9.7 130 101-277 45-183 (214)
110 PRK00149 dnaA chromosomal repl 97.6 0.0011 2.4E-08 74.4 15.3 181 100-305 148-349 (450)
111 PRK14962 DNA polymerase III su 97.6 0.0011 2.4E-08 73.8 14.6 101 184-287 116-223 (472)
112 PRK08903 DnaA regulatory inact 97.6 0.00065 1.4E-08 68.8 11.8 149 100-288 42-204 (227)
113 KOG3665 ZYG-1-like serine/thre 97.6 4.1E-05 8.9E-10 88.8 3.3 129 468-597 122-261 (699)
114 PRK09112 DNA polymerase III su 97.6 0.0024 5.1E-08 68.5 16.3 199 72-284 23-241 (351)
115 PF05621 TniB: Bacterial TniB 97.6 0.0016 3.6E-08 66.5 14.1 176 98-279 59-257 (302)
116 PRK14951 DNA polymerase III su 97.5 0.0014 3.1E-08 74.8 15.3 177 100-283 38-225 (618)
117 PF12799 LRR_4: Leucine Rich r 97.5 7.8E-05 1.7E-09 52.9 3.2 33 494-526 2-34 (44)
118 PRK07471 DNA polymerase III su 97.5 0.0029 6.4E-08 68.2 16.8 197 73-284 20-239 (365)
119 PRK14964 DNA polymerase III su 97.5 0.0014 3E-08 72.8 14.5 170 101-282 36-216 (491)
120 PRK05896 DNA polymerase III su 97.5 0.00082 1.8E-08 75.8 12.6 195 73-285 17-223 (605)
121 TIGR00678 holB DNA polymerase 97.5 0.0011 2.4E-08 64.8 12.3 87 184-279 95-187 (188)
122 PRK11331 5-methylcytosine-spec 97.5 0.00038 8.2E-09 75.4 9.4 49 101-151 195-243 (459)
123 PRK14086 dnaA chromosomal repl 97.5 0.0019 4.2E-08 72.9 15.3 152 101-277 315-482 (617)
124 PRK08118 topology modulation p 97.5 5.8E-05 1.2E-09 72.0 2.8 36 101-137 2-37 (167)
125 KOG2982 Uncharacterized conser 97.5 3.5E-05 7.6E-10 76.4 1.1 85 490-574 68-158 (418)
126 PRK14969 DNA polymerase III su 97.5 0.0015 3.2E-08 74.2 14.3 193 73-283 17-220 (527)
127 PRK14958 DNA polymerase III su 97.5 0.0012 2.6E-08 74.5 13.3 194 72-283 16-220 (509)
128 PRK12422 chromosomal replicati 97.5 0.0018 3.9E-08 71.8 14.5 149 100-275 141-305 (445)
129 PRK00440 rfc replication facto 97.5 0.0039 8.5E-08 66.8 16.7 158 99-282 37-202 (319)
130 PRK08116 hypothetical protein; 97.4 0.0005 1.1E-08 70.9 8.6 99 101-220 115-220 (268)
131 PRK07940 DNA polymerase III su 97.4 0.0041 9E-08 67.6 15.7 92 184-283 116-213 (394)
132 PRK08691 DNA polymerase III su 97.4 0.0022 4.9E-08 73.2 13.9 194 72-283 16-220 (709)
133 PRK07994 DNA polymerase III su 97.4 0.0012 2.6E-08 75.7 11.8 172 101-284 39-221 (647)
134 PRK14954 DNA polymerase III su 97.4 0.0043 9.3E-08 71.2 16.3 178 101-283 39-229 (620)
135 PRK14970 DNA polymerase III su 97.4 0.0035 7.6E-08 68.5 14.8 157 100-280 39-206 (367)
136 KOG2543 Origin recognition com 97.3 0.001 2.2E-08 68.9 9.4 142 100-249 30-191 (438)
137 PF00004 AAA: ATPase family as 97.3 0.00045 9.8E-09 63.1 6.5 69 103-197 1-70 (132)
138 TIGR02880 cbbX_cfxQ probable R 97.3 0.0032 7E-08 65.7 13.4 130 102-253 60-210 (284)
139 COG3899 Predicted ATPase [Gene 97.3 0.016 3.4E-07 69.8 20.6 294 98-422 22-385 (849)
140 PRK03992 proteasome-activating 97.3 0.0021 4.6E-08 70.3 12.1 149 98-276 163-336 (389)
141 PRK14959 DNA polymerase III su 97.3 0.0047 1E-07 70.2 14.7 177 100-288 38-226 (624)
142 PRK07133 DNA polymerase III su 97.3 0.0038 8.3E-08 72.0 14.1 192 73-285 19-221 (725)
143 PF04665 Pox_A32: Poxvirus A32 97.2 0.00063 1.4E-08 67.8 6.7 36 101-140 14-49 (241)
144 PRK09111 DNA polymerase III su 97.2 0.0048 1E-07 70.7 14.7 200 72-284 24-234 (598)
145 CHL00181 cbbX CbbX; Provisiona 97.2 0.0056 1.2E-07 63.9 14.1 132 101-254 60-212 (287)
146 TIGR02881 spore_V_K stage V sp 97.2 0.0024 5.2E-08 66.1 11.3 28 98-125 40-67 (261)
147 PTZ00454 26S protease regulato 97.2 0.0049 1.1E-07 67.2 13.9 150 98-277 177-351 (398)
148 KOG1644 U2-associated snRNP A' 97.2 0.00059 1.3E-08 64.4 5.8 80 446-526 42-123 (233)
149 PTZ00361 26 proteosome regulat 97.2 0.0016 3.4E-08 71.6 10.1 130 99-254 216-370 (438)
150 KOG4579 Leucine-rich repeat (L 97.2 3.7E-05 8E-10 67.5 -2.0 105 451-557 32-141 (177)
151 PHA02544 44 clamp loader, smal 97.2 0.0067 1.4E-07 64.9 14.8 25 100-124 43-67 (316)
152 COG0593 DnaA ATPase involved i 97.2 0.0056 1.2E-07 65.8 13.7 134 99-255 112-261 (408)
153 smart00382 AAA ATPases associa 97.2 0.001 2.2E-08 61.4 7.3 26 101-126 3-28 (148)
154 KOG0991 Replication factor C, 97.2 0.014 3.1E-07 56.3 14.7 30 97-126 45-74 (333)
155 PRK14950 DNA polymerase III su 97.2 0.0062 1.3E-07 70.5 14.8 198 73-287 17-225 (585)
156 PRK07764 DNA polymerase III su 97.2 0.007 1.5E-07 71.9 15.4 190 73-281 16-219 (824)
157 PRK14952 DNA polymerase III su 97.2 0.0063 1.4E-07 69.3 14.5 197 73-287 14-224 (584)
158 PRK14953 DNA polymerase III su 97.1 0.013 2.8E-07 65.8 16.7 99 184-285 118-222 (486)
159 PRK07261 topology modulation p 97.1 0.0014 3.1E-08 62.8 7.8 35 102-137 2-36 (171)
160 PF00448 SRP54: SRP54-type pro 97.1 0.0028 6E-08 62.0 9.6 91 100-194 1-92 (196)
161 PRK12377 putative replication 97.1 0.00096 2.1E-08 67.6 6.4 74 100-196 101-174 (248)
162 KOG2227 Pre-initiation complex 97.1 0.023 5E-07 60.8 16.4 181 97-284 172-373 (529)
163 PRK14971 DNA polymerase III su 97.1 0.017 3.6E-07 66.9 16.9 97 184-283 120-222 (614)
164 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0042 9E-08 63.3 10.6 93 101-197 70-175 (274)
165 PRK12608 transcription termina 97.0 0.0053 1.1E-07 65.1 11.3 92 101-197 134-232 (380)
166 COG3267 ExeA Type II secretory 97.0 0.027 5.8E-07 55.7 15.2 181 97-285 48-247 (269)
167 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.3E-08 62.7 5.3 106 517-631 43-150 (233)
168 KOG0741 AAA+-type ATPase [Post 97.0 0.027 5.8E-07 61.0 15.9 147 97-273 535-704 (744)
169 PRK08451 DNA polymerase III su 97.0 0.021 4.6E-07 64.2 16.2 173 100-284 36-219 (535)
170 TIGR03689 pup_AAA proteasome A 96.9 0.009 2E-07 66.7 12.9 140 99-252 215-379 (512)
171 PRK14948 DNA polymerase III su 96.9 0.0092 2E-07 68.9 13.4 175 101-285 39-224 (620)
172 KOG0989 Replication factor C, 96.9 0.01 2.2E-07 59.9 11.5 184 73-283 37-231 (346)
173 PRK05707 DNA polymerase III su 96.9 0.018 3.9E-07 61.2 14.1 168 100-283 22-203 (328)
174 COG1373 Predicted ATPase (AAA+ 96.9 0.009 1.9E-07 65.5 12.2 117 102-247 39-163 (398)
175 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.5E-08 59.4 3.7 23 102-124 1-23 (121)
176 KOG1947 Leucine rich repeat pr 96.8 0.00058 1.3E-08 77.9 2.1 42 762-803 400-443 (482)
177 KOG4579 Leucine-rich repeat (L 96.8 0.00016 3.4E-09 63.7 -2.1 82 514-597 51-134 (177)
178 PRK06647 DNA polymerase III su 96.8 0.019 4.1E-07 65.6 13.9 193 74-284 18-221 (563)
179 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0044 9.4E-08 74.5 9.1 133 102-251 210-363 (852)
180 PRK06305 DNA polymerase III su 96.7 0.027 5.9E-07 62.8 14.7 94 184-280 120-219 (451)
181 PRK08181 transposase; Validate 96.7 0.0033 7.1E-08 64.6 6.6 73 101-197 107-179 (269)
182 TIGR00064 ftsY signal recognit 96.7 0.021 4.6E-07 59.0 12.7 94 97-195 69-164 (272)
183 cd03115 SRP The signal recogni 96.6 0.0088 1.9E-07 57.6 8.9 25 102-126 2-26 (173)
184 PRK06921 hypothetical protein; 96.6 0.0043 9.2E-08 64.0 7.0 39 99-140 116-154 (266)
185 PRK07952 DNA replication prote 96.6 0.0046 1E-07 62.5 7.1 76 100-197 99-174 (244)
186 cd01120 RecA-like_NTPases RecA 96.6 0.0053 1.1E-07 58.3 7.2 40 102-145 1-40 (165)
187 TIGR00602 rad24 checkpoint pro 96.6 0.013 2.8E-07 67.4 11.0 28 99-126 109-136 (637)
188 PF07693 KAP_NTPase: KAP famil 96.6 0.074 1.6E-06 57.1 16.5 60 98-157 18-80 (325)
189 TIGR02639 ClpA ATP-dependent C 96.5 0.013 2.8E-07 70.0 11.2 134 102-251 205-358 (731)
190 PRK14965 DNA polymerase III su 96.5 0.045 9.7E-07 63.1 15.1 194 73-285 17-223 (576)
191 TIGR02237 recomb_radB DNA repa 96.5 0.02 4.2E-07 57.1 10.7 49 98-151 10-58 (209)
192 COG1222 RPT1 ATP-dependent 26S 96.5 0.063 1.4E-06 55.7 14.1 162 97-288 182-372 (406)
193 KOG2739 Leucine-rich acidic nu 96.5 0.0019 4.1E-08 63.7 3.0 108 514-632 41-154 (260)
194 KOG2123 Uncharacterized conser 96.5 0.00025 5.3E-09 69.9 -3.2 105 515-627 18-123 (388)
195 COG0572 Udk Uridine kinase [Nu 96.4 0.0058 1.3E-07 59.5 6.0 29 98-126 6-34 (218)
196 cd01393 recA_like RecA is a b 96.4 0.02 4.3E-07 57.9 10.3 49 98-150 17-71 (226)
197 PF07728 AAA_5: AAA domain (dy 96.4 0.0029 6.4E-08 58.4 3.8 43 103-152 2-44 (139)
198 PRK05541 adenylylsulfate kinas 96.4 0.009 2E-07 57.7 7.4 36 99-138 6-41 (176)
199 PRK14974 cell division protein 96.4 0.017 3.8E-07 61.2 10.0 94 98-196 138-233 (336)
200 CHL00095 clpC Clp protease ATP 96.4 0.019 4E-07 69.4 11.5 152 76-250 183-353 (821)
201 TIGR01241 FtsH_fam ATP-depende 96.4 0.04 8.7E-07 62.7 13.6 147 100-276 88-259 (495)
202 PRK09361 radB DNA repair and r 96.4 0.021 4.6E-07 57.6 10.2 46 99-149 22-67 (225)
203 KOG0744 AAA+-type ATPase [Post 96.4 0.013 2.8E-07 59.5 8.1 82 101-196 178-261 (423)
204 COG1484 DnaC DNA replication p 96.4 0.0069 1.5E-07 61.9 6.4 75 99-196 104-178 (254)
205 PRK07399 DNA polymerase III su 96.4 0.1 2.3E-06 55.1 15.4 173 100-282 26-220 (314)
206 PRK05563 DNA polymerase III su 96.3 0.073 1.6E-06 61.1 15.4 193 72-282 16-219 (559)
207 CHL00176 ftsH cell division pr 96.3 0.032 7E-07 64.6 12.4 146 100-275 216-386 (638)
208 PF00485 PRK: Phosphoribulokin 96.3 0.026 5.7E-07 55.4 9.9 25 102-126 1-25 (194)
209 PRK06835 DNA replication prote 96.3 0.0088 1.9E-07 63.4 6.9 36 101-140 184-219 (329)
210 PF05673 DUF815: Protein of un 96.2 0.17 3.7E-06 50.3 15.0 51 73-126 28-78 (249)
211 COG1618 Predicted nucleotide k 96.2 0.0047 1E-07 56.3 3.5 27 100-126 5-31 (179)
212 KOG2739 Leucine-rich acidic nu 96.2 0.0022 4.8E-08 63.3 1.6 63 490-552 62-129 (260)
213 PRK06696 uridine kinase; Valid 96.1 0.0097 2.1E-07 59.9 6.0 30 97-126 19-48 (223)
214 KOG2123 Uncharacterized conser 96.1 0.00063 1.4E-08 67.1 -2.5 36 702-737 85-123 (388)
215 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.03 6.5E-07 56.9 9.6 53 99-151 18-72 (235)
216 PRK00771 signal recognition pa 96.1 0.037 8.1E-07 60.9 10.5 90 98-194 93-184 (437)
217 TIGR03499 FlhF flagellar biosy 96.1 0.03 6.6E-07 58.4 9.5 28 99-126 193-220 (282)
218 COG0468 RecA RecA/RadA recombi 96.0 0.038 8.3E-07 56.6 9.9 96 97-196 57-152 (279)
219 PF13671 AAA_33: AAA domain; P 96.0 0.011 2.4E-07 54.8 5.6 22 102-123 1-22 (143)
220 CHL00195 ycf46 Ycf46; Provisio 96.0 0.22 4.9E-06 55.8 16.8 130 99-254 258-408 (489)
221 PLN00020 ribulose bisphosphate 96.0 0.018 3.8E-07 60.6 7.4 29 98-126 146-174 (413)
222 KOG1947 Leucine rich repeat pr 96.0 0.0021 4.6E-08 73.3 0.7 133 682-822 294-438 (482)
223 PF00006 ATP-synt_ab: ATP synt 96.0 0.026 5.6E-07 55.8 8.2 87 101-195 16-115 (215)
224 PRK08939 primosomal protein Dn 96.0 0.022 4.8E-07 59.9 8.0 97 100-220 156-260 (306)
225 PRK10416 signal recognition pa 95.9 0.087 1.9E-06 55.7 12.4 29 98-126 112-140 (318)
226 TIGR03346 chaperone_ClpB ATP-d 95.9 0.071 1.5E-06 64.7 13.2 134 102-251 196-349 (852)
227 PRK08769 DNA polymerase III su 95.9 0.11 2.4E-06 54.8 12.9 92 184-284 112-209 (319)
228 PRK04296 thymidine kinase; Pro 95.9 0.012 2.6E-07 57.5 5.4 113 101-222 3-117 (190)
229 TIGR01425 SRP54_euk signal rec 95.9 0.04 8.7E-07 60.1 9.7 29 98-126 98-126 (429)
230 cd01394 radB RadB. The archaea 95.9 0.048 1E-06 54.7 9.7 43 99-145 18-60 (218)
231 TIGR00959 ffh signal recogniti 95.8 0.052 1.1E-06 59.6 10.4 28 98-125 97-124 (428)
232 KOG1969 DNA replication checkp 95.8 0.021 4.6E-07 64.2 7.3 77 98-198 324-400 (877)
233 PRK14722 flhF flagellar biosyn 95.8 0.042 9E-07 59.0 9.4 89 99-195 136-225 (374)
234 PRK08927 fliI flagellum-specif 95.8 0.037 8.1E-07 60.4 9.1 90 99-196 157-259 (442)
235 TIGR00763 lon ATP-dependent pr 95.8 0.089 1.9E-06 63.2 13.2 26 100-125 347-372 (775)
236 COG2884 FtsE Predicted ATPase 95.8 0.025 5.4E-07 53.3 6.5 51 178-228 148-204 (223)
237 TIGR02012 tigrfam_recA protein 95.8 0.029 6.3E-07 58.9 7.8 85 98-195 53-143 (321)
238 PRK10867 signal recognition pa 95.7 0.059 1.3E-06 59.2 10.3 30 97-126 97-126 (433)
239 KOG0735 AAA+-type ATPase [Post 95.7 0.029 6.3E-07 62.9 7.7 74 101-196 432-505 (952)
240 PRK06526 transposase; Provisio 95.7 0.026 5.7E-07 57.6 7.0 26 101-126 99-124 (254)
241 PRK05480 uridine/cytidine kina 95.7 0.011 2.3E-07 59.0 4.1 27 98-124 4-30 (209)
242 cd01135 V_A-ATPase_B V/A-type 95.7 0.076 1.6E-06 54.1 10.1 96 101-197 70-178 (276)
243 cd00983 recA RecA is a bacter 95.7 0.031 6.8E-07 58.7 7.6 84 99-195 54-143 (325)
244 PF01695 IstB_IS21: IstB-like 95.7 0.024 5.1E-07 54.6 6.2 73 101-197 48-120 (178)
245 PRK10865 protein disaggregatio 95.6 0.061 1.3E-06 65.1 11.0 133 102-251 201-354 (857)
246 PRK06871 DNA polymerase III su 95.6 0.2 4.3E-06 53.0 13.5 164 100-280 24-200 (325)
247 PRK04301 radA DNA repair and r 95.6 0.066 1.4E-06 57.1 10.1 59 99-158 101-161 (317)
248 PF13238 AAA_18: AAA domain; P 95.6 0.01 2.3E-07 53.7 3.5 22 103-124 1-22 (129)
249 PRK11034 clpA ATP-dependent Cl 95.6 0.013 2.8E-07 69.1 5.1 133 103-251 210-362 (758)
250 KOG0730 AAA+-type ATPase [Post 95.6 0.76 1.6E-05 51.8 18.0 184 96-311 464-677 (693)
251 PRK09183 transposase/IS protei 95.6 0.061 1.3E-06 55.3 9.3 25 101-125 103-127 (259)
252 PRK06090 DNA polymerase III su 95.6 0.51 1.1E-05 49.8 16.2 162 100-283 25-201 (319)
253 PTZ00301 uridine kinase; Provi 95.5 0.022 4.7E-07 56.3 5.6 27 100-126 3-29 (210)
254 COG0563 Adk Adenylate kinase a 95.5 0.023 4.9E-07 54.6 5.5 23 102-124 2-24 (178)
255 PRK09354 recA recombinase A; P 95.5 0.042 9.1E-07 58.2 8.0 85 98-195 58-148 (349)
256 KOG0733 Nuclear AAA ATPase (VC 95.5 0.19 4.2E-06 55.6 12.9 74 98-197 221-294 (802)
257 PRK04132 replication factor C 95.5 0.28 6.1E-06 58.3 15.4 153 108-285 574-733 (846)
258 TIGR00235 udk uridine kinase. 95.5 0.014 3E-07 58.1 4.1 28 98-125 4-31 (207)
259 PF13177 DNA_pol3_delta2: DNA 95.5 0.16 3.5E-06 48.0 11.2 27 100-126 19-45 (162)
260 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.7E-07 46.6 2.9 23 102-124 1-23 (69)
261 PRK08233 hypothetical protein; 95.5 0.012 2.7E-07 57.0 3.6 25 100-124 3-27 (182)
262 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.1 2.2E-06 48.7 9.4 116 101-221 3-138 (159)
263 cd01131 PilT Pilus retraction 95.4 0.02 4.4E-07 56.3 5.0 110 101-224 2-112 (198)
264 COG5238 RNA1 Ran GTPase-activa 95.4 0.025 5.3E-07 56.1 5.3 85 467-551 29-132 (388)
265 PRK13230 nitrogenase reductase 95.4 0.02 4.4E-07 59.9 5.2 26 101-126 2-27 (279)
266 PRK05800 cobU adenosylcobinami 95.4 0.011 2.3E-07 56.5 2.8 23 102-124 3-25 (170)
267 PRK13236 nitrogenase reductase 95.4 0.022 4.8E-07 60.0 5.4 30 97-126 3-32 (296)
268 PRK06964 DNA polymerase III su 95.4 0.25 5.3E-06 52.7 13.3 89 184-283 131-225 (342)
269 PF08433 KTI12: Chromatin asso 95.4 0.039 8.5E-07 56.8 7.0 81 101-197 2-82 (270)
270 PRK12597 F0F1 ATP synthase sub 95.4 0.092 2E-06 57.9 10.2 93 101-196 144-248 (461)
271 PRK06002 fliI flagellum-specif 95.4 0.041 8.9E-07 60.2 7.4 90 100-196 165-265 (450)
272 PRK12678 transcription termina 95.3 0.067 1.5E-06 59.5 8.9 93 101-196 417-514 (672)
273 PF13306 LRR_5: Leucine rich r 95.3 0.05 1.1E-06 49.2 7.0 57 535-594 54-111 (129)
274 PRK08058 DNA polymerase III su 95.3 0.34 7.4E-06 51.8 14.3 141 100-249 28-180 (329)
275 KOG0743 AAA+-type ATPase [Post 95.3 0.22 4.8E-06 53.5 12.3 148 101-288 236-415 (457)
276 cd00544 CobU Adenosylcobinamid 95.3 0.031 6.7E-07 53.2 5.5 81 103-194 2-82 (169)
277 PRK11889 flhF flagellar biosyn 95.3 0.088 1.9E-06 56.2 9.3 28 99-126 240-267 (436)
278 COG0541 Ffh Signal recognition 95.3 0.39 8.4E-06 51.6 14.0 62 97-163 97-160 (451)
279 PRK12727 flagellar biosynthesi 95.2 0.072 1.6E-06 59.2 8.9 28 99-126 349-376 (559)
280 PRK13235 nifH nitrogenase redu 95.2 0.022 4.8E-07 59.4 4.8 26 101-126 2-27 (274)
281 PRK12724 flagellar biosynthesi 95.2 0.065 1.4E-06 58.0 8.2 25 100-124 223-247 (432)
282 PRK13232 nifH nitrogenase redu 95.2 0.023 5E-07 59.2 4.8 26 101-126 2-27 (273)
283 PRK12723 flagellar biosynthesi 95.2 0.23 5E-06 53.9 12.5 91 99-196 173-265 (388)
284 smart00763 AAA_PrkA PrkA AAA d 95.2 0.038 8.3E-07 58.5 6.4 52 74-126 53-104 (361)
285 COG1428 Deoxynucleoside kinase 95.2 0.03 6.6E-07 53.8 5.1 26 100-125 4-29 (216)
286 PRK06762 hypothetical protein; 95.2 0.018 4E-07 54.9 3.7 24 101-124 3-26 (166)
287 COG5238 RNA1 Ran GTPase-activa 95.2 0.019 4.1E-07 56.8 3.7 87 446-533 30-136 (388)
288 PF00154 RecA: recA bacterial 95.2 0.076 1.6E-06 55.6 8.4 86 99-197 52-143 (322)
289 COG2812 DnaX DNA polymerase II 95.1 0.1 2.2E-06 58.1 9.8 166 101-278 39-215 (515)
290 PRK09280 F0F1 ATP synthase sub 95.1 0.13 2.9E-06 56.5 10.5 93 101-196 145-249 (463)
291 PRK08972 fliI flagellum-specif 95.1 0.055 1.2E-06 58.9 7.4 89 100-196 162-263 (444)
292 TIGR02238 recomb_DMC1 meiotic 95.1 0.13 2.8E-06 54.4 10.0 60 99-159 95-156 (313)
293 COG1102 Cmk Cytidylate kinase 95.1 0.026 5.5E-07 51.6 4.0 45 102-161 2-46 (179)
294 PRK03839 putative kinase; Prov 95.1 0.019 4.1E-07 55.7 3.5 24 102-125 2-25 (180)
295 PF00910 RNA_helicase: RNA hel 95.1 0.026 5.7E-07 49.3 4.1 25 103-127 1-25 (107)
296 PRK07993 DNA polymerase III su 95.1 0.34 7.3E-06 51.8 13.2 165 100-281 24-202 (334)
297 PRK07667 uridine kinase; Provi 95.1 0.035 7.7E-07 54.4 5.4 29 98-126 15-43 (193)
298 TIGR01040 V-ATPase_V1_B V-type 95.1 0.094 2E-06 57.3 9.0 96 101-196 142-258 (466)
299 PRK08149 ATP synthase SpaL; Va 95.1 0.07 1.5E-06 58.3 8.1 89 100-196 151-252 (428)
300 COG0466 Lon ATP-dependent Lon 95.1 0.11 2.3E-06 58.9 9.5 135 99-251 349-508 (782)
301 TIGR01360 aden_kin_iso1 adenyl 95.1 0.02 4.4E-07 55.9 3.7 26 99-124 2-27 (188)
302 PTZ00088 adenylate kinase 1; P 95.0 0.033 7.1E-07 55.9 5.2 22 103-124 9-30 (229)
303 PRK06547 hypothetical protein; 95.0 0.023 4.9E-07 54.3 3.9 28 97-124 12-39 (172)
304 TIGR01243 CDC48 AAA family ATP 95.0 0.18 3.8E-06 60.5 12.2 26 99-124 211-236 (733)
305 PF13306 LRR_5: Leucine rich r 95.0 0.066 1.4E-06 48.4 6.7 117 464-588 8-128 (129)
306 TIGR03498 FliI_clade3 flagella 95.0 0.057 1.2E-06 59.0 7.2 89 100-196 140-241 (418)
307 PRK12726 flagellar biosynthesi 95.0 0.26 5.6E-06 52.6 11.7 90 98-195 204-295 (407)
308 PRK05703 flhF flagellar biosyn 95.0 0.075 1.6E-06 58.7 8.2 87 100-194 221-308 (424)
309 COG2019 AdkA Archaeal adenylat 95.0 0.12 2.5E-06 47.7 7.9 25 100-124 4-28 (189)
310 cd01132 F1_ATPase_alpha F1 ATP 95.0 0.15 3.1E-06 52.1 9.6 95 101-203 70-180 (274)
311 PRK10787 DNA-binding ATP-depen 95.0 0.28 6.1E-06 58.6 13.5 26 99-124 348-373 (784)
312 TIGR02639 ClpA ATP-dependent C 95.0 0.097 2.1E-06 62.5 9.8 25 100-124 484-508 (731)
313 TIGR02239 recomb_RAD51 DNA rep 95.0 0.13 2.9E-06 54.4 9.7 60 98-158 94-155 (316)
314 TIGR02858 spore_III_AA stage I 94.9 0.087 1.9E-06 54.2 8.0 117 98-224 109-232 (270)
315 cd01136 ATPase_flagellum-secre 94.9 0.1 2.3E-06 54.9 8.7 89 100-196 69-170 (326)
316 cd01121 Sms Sms (bacterial rad 94.9 0.14 3E-06 55.4 9.8 87 100-196 82-169 (372)
317 PRK04040 adenylate kinase; Pro 94.9 0.024 5.3E-07 55.1 3.7 24 101-124 3-26 (188)
318 KOG2004 Mitochondrial ATP-depe 94.9 0.11 2.3E-06 58.7 8.8 83 97-197 435-517 (906)
319 TIGR03305 alt_F1F0_F1_bet alte 94.9 0.14 3.1E-06 56.1 9.8 93 101-196 139-243 (449)
320 PLN03186 DNA repair protein RA 94.9 0.15 3.2E-06 54.5 9.7 61 98-159 121-183 (342)
321 COG3640 CooC CO dehydrogenase 94.9 0.054 1.2E-06 52.9 5.8 42 102-146 2-43 (255)
322 PLN03187 meiotic recombination 94.8 0.19 4E-06 53.6 10.4 61 98-159 124-186 (344)
323 PF08423 Rad51: Rad51; InterP 94.8 0.16 3.5E-06 52.1 9.7 57 100-157 38-96 (256)
324 PRK05922 type III secretion sy 94.8 0.11 2.4E-06 56.8 8.8 90 100-197 157-259 (434)
325 PRK00625 shikimate kinase; Pro 94.8 0.024 5.1E-07 54.2 3.3 24 102-125 2-25 (173)
326 TIGR01281 DPOR_bchL light-inde 94.8 0.036 7.8E-07 57.6 4.9 25 102-126 2-26 (268)
327 PTZ00035 Rad51 protein; Provis 94.8 0.19 4.1E-06 53.7 10.3 60 98-158 116-177 (337)
328 PF10443 RNA12: RNA12 protein; 94.7 1.6 3.5E-05 47.2 17.0 199 80-295 4-288 (431)
329 PHA00729 NTP-binding motif con 94.7 0.034 7.3E-07 55.0 4.1 28 98-125 15-42 (226)
330 PRK15453 phosphoribulokinase; 94.7 0.18 4E-06 51.4 9.4 28 98-125 3-30 (290)
331 PF03205 MobB: Molybdopterin g 94.6 0.038 8.1E-07 50.8 4.0 39 101-142 1-39 (140)
332 PRK13185 chlL protochlorophyll 94.6 0.044 9.6E-07 57.0 5.1 26 101-126 3-28 (270)
333 PRK09099 type III secretion sy 94.6 0.096 2.1E-06 57.5 7.7 91 99-196 162-264 (441)
334 PF00560 LRR_1: Leucine Rich R 94.6 0.013 2.9E-07 34.5 0.6 19 541-559 2-20 (22)
335 PF13481 AAA_25: AAA domain; P 94.6 0.14 3E-06 50.1 8.3 51 101-154 33-90 (193)
336 TIGR02236 recomb_radA DNA repa 94.6 0.19 4.2E-06 53.4 9.9 59 99-158 94-154 (310)
337 cd01878 HflX HflX subfamily. 94.6 0.066 1.4E-06 53.0 6.0 59 34-124 7-65 (204)
338 cd02023 UMPK Uridine monophosp 94.6 0.024 5.1E-07 55.9 2.8 23 102-124 1-23 (198)
339 CHL00095 clpC Clp protease ATP 94.6 0.15 3.3E-06 61.7 10.2 25 100-124 539-563 (821)
340 PRK10751 molybdopterin-guanine 94.6 0.042 9.2E-07 52.1 4.3 29 98-126 4-32 (173)
341 CHL00060 atpB ATP synthase CF1 94.5 0.21 4.6E-06 55.2 10.1 94 101-197 162-274 (494)
342 PRK08533 flagellar accessory p 94.5 0.3 6.4E-06 49.3 10.6 52 100-158 24-75 (230)
343 cd02029 PRK_like Phosphoribulo 94.5 0.15 3.2E-06 51.7 8.2 25 102-126 1-25 (277)
344 TIGR01243 CDC48 AAA family ATP 94.5 0.24 5.2E-06 59.4 11.7 148 100-277 487-657 (733)
345 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.19 4.2E-06 51.7 9.5 40 99-142 35-74 (259)
346 KOG3864 Uncharacterized conser 94.5 0.0049 1.1E-07 58.4 -2.0 70 701-777 121-190 (221)
347 PRK06793 fliI flagellum-specif 94.5 0.12 2.7E-06 56.5 8.3 92 99-197 155-258 (432)
348 PRK13234 nifH nitrogenase redu 94.5 0.052 1.1E-06 57.1 5.4 28 99-126 3-30 (295)
349 TIGR00041 DTMP_kinase thymidyl 94.5 0.13 2.9E-06 50.4 8.0 26 101-126 4-29 (195)
350 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.25 5.4E-06 50.2 10.1 50 99-154 20-69 (237)
351 PF12775 AAA_7: P-loop contain 94.5 0.025 5.5E-07 58.4 2.9 77 101-196 34-111 (272)
352 PRK08699 DNA polymerase III su 94.5 0.46 9.9E-06 50.5 12.4 26 100-125 21-46 (325)
353 cd02024 NRK1 Nicotinamide ribo 94.5 0.027 5.9E-07 54.4 2.9 23 102-124 1-23 (187)
354 cd02025 PanK Pantothenate kina 94.5 0.027 5.9E-07 56.3 3.0 24 102-125 1-24 (220)
355 PRK00131 aroK shikimate kinase 94.5 0.035 7.6E-07 53.4 3.7 25 100-124 4-28 (175)
356 PRK09270 nucleoside triphospha 94.5 0.079 1.7E-06 53.5 6.3 30 97-126 30-59 (229)
357 COG1936 Predicted nucleotide k 94.4 0.028 6.1E-07 52.1 2.6 20 102-121 2-21 (180)
358 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.028 6E-07 54.7 2.8 23 102-124 1-23 (183)
359 PF01583 APS_kinase: Adenylyls 94.4 0.083 1.8E-06 49.1 5.7 27 101-127 3-29 (156)
360 PRK06995 flhF flagellar biosyn 94.4 0.16 3.4E-06 56.5 8.8 27 100-126 256-282 (484)
361 PRK10733 hflB ATP-dependent me 94.4 0.25 5.5E-06 57.9 11.1 127 101-253 186-337 (644)
362 PRK10865 protein disaggregatio 94.4 0.44 9.5E-06 57.8 13.4 25 100-124 598-622 (857)
363 TIGR03574 selen_PSTK L-seryl-t 94.4 0.16 3.4E-06 52.2 8.4 25 102-126 1-25 (249)
364 COG1419 FlhF Flagellar GTP-bin 94.4 0.19 4E-06 53.8 8.9 59 99-160 202-262 (407)
365 TIGR03496 FliI_clade1 flagella 94.4 0.13 2.7E-06 56.3 8.0 89 100-196 137-238 (411)
366 COG4608 AppF ABC-type oligopep 94.3 0.13 2.7E-06 51.9 7.2 122 98-227 37-176 (268)
367 COG4088 Predicted nucleotide k 94.3 0.11 2.5E-06 49.4 6.4 26 101-126 2-27 (261)
368 COG0470 HolB ATPase involved i 94.3 0.27 5.9E-06 52.7 10.5 26 101-126 25-50 (325)
369 PF00560 LRR_1: Leucine Rich R 94.3 0.02 4.4E-07 33.7 1.0 20 495-514 2-21 (22)
370 PRK00889 adenylylsulfate kinas 94.3 0.048 1E-06 52.5 4.2 27 100-126 4-30 (175)
371 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.23 4.9E-06 50.2 9.3 48 99-152 19-66 (229)
372 TIGR01069 mutS2 MutS2 family p 94.3 0.074 1.6E-06 63.3 6.5 191 100-308 322-523 (771)
373 PLN02318 phosphoribulokinase/u 94.3 0.063 1.4E-06 60.2 5.4 27 97-123 62-88 (656)
374 TIGR00554 panK_bact pantothena 94.3 0.27 5.8E-06 51.1 9.7 28 98-125 60-87 (290)
375 TIGR02322 phosphon_PhnN phosph 94.3 0.037 7.9E-07 53.6 3.3 24 101-124 2-25 (179)
376 KOG3347 Predicted nucleotide k 94.2 0.069 1.5E-06 48.1 4.6 36 100-144 7-42 (176)
377 TIGR03497 FliI_clade2 flagella 94.2 0.13 2.8E-06 56.3 7.7 91 98-196 135-238 (413)
378 PRK07721 fliI flagellum-specif 94.2 0.16 3.6E-06 55.9 8.6 91 99-196 157-259 (438)
379 PRK05688 fliI flagellum-specif 94.2 0.14 3.1E-06 56.2 8.0 90 100-197 168-270 (451)
380 TIGR03575 selen_PSTK_euk L-ser 94.2 0.16 3.5E-06 53.9 8.1 23 103-125 2-24 (340)
381 PRK06067 flagellar accessory p 94.2 0.24 5.3E-06 50.2 9.3 50 98-153 23-72 (234)
382 cd02020 CMPK Cytidine monophos 94.2 0.036 7.7E-07 51.5 3.0 23 102-124 1-23 (147)
383 cd02028 UMPK_like Uridine mono 94.2 0.039 8.5E-07 53.3 3.3 25 102-126 1-25 (179)
384 COG0003 ArsA Predicted ATPase 94.2 0.099 2.1E-06 55.0 6.5 49 100-152 2-50 (322)
385 cd03214 ABC_Iron-Siderophores_ 94.2 0.089 1.9E-06 50.9 5.8 26 99-124 24-49 (180)
386 PTZ00185 ATPase alpha subunit; 94.1 0.27 5.9E-06 54.2 9.8 94 101-196 190-300 (574)
387 cd03282 ABC_MSH4_euk MutS4 hom 94.1 0.066 1.4E-06 52.8 4.8 121 98-228 27-158 (204)
388 PF00158 Sigma54_activat: Sigm 94.1 0.63 1.4E-05 44.2 11.3 22 102-123 24-45 (168)
389 TIGR01039 atpD ATP synthase, F 94.1 0.38 8.2E-06 52.8 10.9 94 101-197 144-249 (461)
390 PRK07594 type III secretion sy 94.1 0.22 4.8E-06 54.5 9.0 91 99-197 154-257 (433)
391 PRK06217 hypothetical protein; 94.0 0.041 8.9E-07 53.4 3.2 24 102-125 3-26 (183)
392 PRK08472 fliI flagellum-specif 94.0 0.2 4.4E-06 54.8 8.7 90 100-197 157-258 (434)
393 TIGR01026 fliI_yscN ATPase Fli 94.0 0.15 3.2E-06 56.3 7.8 89 100-196 163-264 (440)
394 COG0125 Tmk Thymidylate kinase 94.0 0.21 4.5E-06 49.2 7.9 50 101-154 4-53 (208)
395 PRK13949 shikimate kinase; Pro 94.0 0.045 9.8E-07 52.2 3.2 23 102-124 3-25 (169)
396 TIGR01041 ATP_syn_B_arch ATP s 93.9 0.32 6.9E-06 53.8 10.0 95 101-196 142-249 (458)
397 PRK13947 shikimate kinase; Pro 93.9 0.046 9.9E-07 52.4 3.2 24 102-125 3-26 (171)
398 TIGR03324 alt_F1F0_F1_al alter 93.9 0.3 6.4E-06 54.2 9.7 88 101-196 163-265 (497)
399 KOG0733 Nuclear AAA ATPase (VC 93.9 0.15 3.2E-06 56.6 7.1 151 99-277 544-718 (802)
400 PRK10463 hydrogenase nickel in 93.8 0.26 5.6E-06 50.8 8.5 30 97-126 101-130 (290)
401 CHL00059 atpA ATP synthase CF1 93.8 0.28 6.1E-06 54.1 9.3 88 101-196 142-244 (485)
402 cd00227 CPT Chloramphenicol (C 93.8 0.052 1.1E-06 52.3 3.3 24 101-124 3-26 (175)
403 cd02032 Bchl_like This family 93.8 0.079 1.7E-06 55.0 5.0 25 102-126 2-26 (267)
404 PF03266 NTPase_1: NTPase; In 93.8 0.059 1.3E-06 51.2 3.6 24 103-126 2-25 (168)
405 TIGR03263 guanyl_kin guanylate 93.8 0.044 9.5E-07 53.1 2.8 23 101-123 2-24 (180)
406 PF06745 KaiC: KaiC; InterPro 93.8 0.13 2.8E-06 52.0 6.3 51 99-154 18-68 (226)
407 cd02021 GntK Gluconate kinase 93.8 0.045 9.7E-07 51.2 2.8 22 102-123 1-22 (150)
408 TIGR02640 gas_vesic_GvpN gas v 93.8 0.16 3.5E-06 52.4 7.2 43 102-151 23-65 (262)
409 PRK14530 adenylate kinase; Pro 93.8 0.053 1.2E-06 54.2 3.5 23 102-124 5-27 (215)
410 PF13604 AAA_30: AAA domain; P 93.8 0.14 3.1E-06 50.2 6.4 27 100-126 18-44 (196)
411 TIGR03345 VI_ClpV1 type VI sec 93.8 0.35 7.6E-06 58.5 10.9 27 98-124 594-620 (852)
412 TIGR02902 spore_lonB ATP-depen 93.7 0.96 2.1E-05 51.8 13.9 25 101-125 87-111 (531)
413 PRK04328 hypothetical protein; 93.7 0.22 4.8E-06 51.0 7.9 53 99-158 22-74 (249)
414 cd03243 ABC_MutS_homologs The 93.7 0.083 1.8E-06 52.2 4.6 23 101-123 30-52 (202)
415 PF02374 ArsA_ATPase: Anion-tr 93.7 0.11 2.5E-06 54.6 5.9 46 101-150 2-47 (305)
416 PRK13975 thymidylate kinase; P 93.7 0.061 1.3E-06 52.9 3.7 25 101-125 3-27 (196)
417 PRK03846 adenylylsulfate kinas 93.7 0.073 1.6E-06 52.4 4.2 28 98-125 22-49 (198)
418 cd02117 NifH_like This family 93.7 0.081 1.8E-06 52.8 4.5 26 101-126 1-26 (212)
419 cd00464 SK Shikimate kinase (S 93.6 0.058 1.3E-06 50.6 3.3 22 103-124 2-23 (154)
420 cd01672 TMPK Thymidine monopho 93.6 0.18 3.9E-06 49.6 7.0 25 102-126 2-26 (200)
421 PRK07196 fliI flagellum-specif 93.6 0.23 4.9E-06 54.5 8.2 26 99-124 154-179 (434)
422 PRK06936 type III secretion sy 93.6 0.2 4.3E-06 54.8 7.7 90 99-196 161-263 (439)
423 COG0194 Gmk Guanylate kinase [ 93.6 0.081 1.8E-06 50.0 4.1 24 101-124 5-28 (191)
424 PF07726 AAA_3: ATPase family 93.6 0.044 9.6E-07 48.6 2.2 24 103-126 2-25 (131)
425 PRK00300 gmk guanylate kinase; 93.6 0.056 1.2E-06 53.6 3.2 26 99-124 4-29 (205)
426 cd01983 Fer4_NifH The Fer4_Nif 93.5 0.1 2.2E-06 44.2 4.4 25 102-126 1-25 (99)
427 PRK12339 2-phosphoglycerate ki 93.5 0.073 1.6E-06 52.1 3.7 25 100-124 3-27 (197)
428 TIGR00073 hypB hydrogenase acc 93.5 0.073 1.6E-06 52.9 3.8 28 97-124 19-46 (207)
429 PRK14723 flhF flagellar biosyn 93.5 0.28 6.2E-06 57.3 9.0 87 100-195 185-273 (767)
430 PRK13343 F0F1 ATP synthase sub 93.4 0.34 7.3E-06 54.0 9.2 88 101-196 163-265 (502)
431 PRK00698 tmk thymidylate kinas 93.4 0.58 1.2E-05 46.3 10.3 26 101-126 4-29 (205)
432 KOG1514 Origin recognition com 93.4 3.6 7.8E-05 47.0 17.0 93 100-196 422-519 (767)
433 TIGR00176 mobB molybdopterin-g 93.4 0.068 1.5E-06 50.1 3.3 25 102-126 1-25 (155)
434 cd00071 GMPK Guanosine monopho 93.4 0.055 1.2E-06 49.7 2.6 23 102-124 1-23 (137)
435 COG0467 RAD55 RecA-superfamily 93.4 0.2 4.3E-06 51.8 7.0 54 98-158 21-74 (260)
436 TIGR00962 atpA proton transloc 93.4 0.36 7.7E-06 54.1 9.3 89 101-197 162-265 (501)
437 TIGR01287 nifH nitrogenase iro 93.4 0.067 1.5E-06 55.8 3.5 26 101-126 1-26 (275)
438 PRK05439 pantothenate kinase; 93.4 0.41 8.9E-06 50.1 9.2 29 97-125 83-111 (311)
439 COG1124 DppF ABC-type dipeptid 93.3 0.064 1.4E-06 52.8 3.0 26 99-124 32-57 (252)
440 TIGR00150 HI0065_YjeE ATPase, 93.3 0.16 3.5E-06 45.8 5.4 25 101-125 23-47 (133)
441 TIGR00708 cobA cob(I)alamin ad 93.3 0.54 1.2E-05 44.5 9.0 116 101-221 6-140 (173)
442 PRK05057 aroK shikimate kinase 93.3 0.078 1.7E-06 50.8 3.6 24 101-124 5-28 (172)
443 cd01134 V_A-ATPase_A V/A-type 93.2 0.56 1.2E-05 49.5 9.9 48 101-154 158-206 (369)
444 PRK14721 flhF flagellar biosyn 93.2 0.48 1E-05 51.9 9.9 26 99-124 190-215 (420)
445 PF00142 Fer4_NifH: 4Fe-4S iro 93.2 0.13 2.8E-06 51.6 5.0 41 101-145 1-41 (273)
446 COG0542 clpA ATP-binding subun 93.2 0.32 7E-06 56.6 8.9 87 97-197 518-605 (786)
447 KOG2228 Origin recognition com 93.2 1.2 2.6E-05 46.2 11.7 148 101-252 50-220 (408)
448 KOG0736 Peroxisome assembly fa 93.2 0.81 1.8E-05 52.4 11.5 72 100-197 705-776 (953)
449 PRK13946 shikimate kinase; Pro 93.1 0.071 1.5E-06 51.8 3.1 25 100-124 10-34 (184)
450 TIGR02546 III_secr_ATP type II 93.1 0.35 7.7E-06 53.2 8.8 90 99-196 144-246 (422)
451 smart00534 MUTSac ATPase domai 93.1 0.076 1.6E-06 51.6 3.3 21 102-122 1-21 (185)
452 COG0464 SpoVK ATPases of the A 93.1 0.61 1.3E-05 53.3 11.1 131 98-254 274-426 (494)
453 PRK09281 F0F1 ATP synthase sub 93.1 0.42 9E-06 53.6 9.4 89 101-197 163-266 (502)
454 KOG3864 Uncharacterized conser 93.1 0.014 3.1E-07 55.4 -1.7 70 727-802 121-191 (221)
455 CHL00072 chlL photochlorophyll 93.1 0.12 2.5E-06 54.3 4.8 24 103-126 3-26 (290)
456 PRK10078 ribose 1,5-bisphospho 93.1 0.069 1.5E-06 52.0 2.9 23 101-123 3-25 (186)
457 PF06309 Torsin: Torsin; Inte 93.1 0.28 6.1E-06 43.4 6.3 28 97-124 50-77 (127)
458 PRK11823 DNA repair protein Ra 93.1 0.35 7.6E-06 53.9 8.8 87 100-196 80-167 (446)
459 PRK09435 membrane ATPase/prote 93.1 0.78 1.7E-05 48.7 10.9 30 97-126 53-82 (332)
460 TIGR03346 chaperone_ClpB ATP-d 93.1 0.16 3.5E-06 61.7 6.6 25 100-124 595-619 (852)
461 PF08477 Miro: Miro-like prote 93.1 0.082 1.8E-06 47.0 3.2 22 103-124 2-23 (119)
462 cd02027 APSK Adenosine 5'-phos 93.1 0.078 1.7E-06 49.5 3.1 24 102-125 1-24 (149)
463 PLN02924 thymidylate kinase 93.0 0.49 1.1E-05 47.2 8.9 54 99-155 15-68 (220)
464 PRK07960 fliI flagellum-specif 93.0 0.2 4.3E-06 54.9 6.5 91 99-197 174-277 (455)
465 cd00820 PEPCK_HprK Phosphoenol 93.0 0.086 1.9E-06 45.5 3.0 23 99-121 14-36 (107)
466 PLN02200 adenylate kinase fami 93.0 0.097 2.1E-06 52.9 3.9 27 98-124 41-67 (234)
467 PRK06820 type III secretion sy 93.0 0.24 5.3E-06 54.3 7.2 88 101-196 164-264 (440)
468 PF00625 Guanylate_kin: Guanyl 93.0 0.11 2.5E-06 50.3 4.2 38 100-141 2-39 (183)
469 TIGR01313 therm_gnt_kin carboh 93.0 0.068 1.5E-06 50.8 2.6 22 103-124 1-22 (163)
470 KOG1532 GTPase XAB1, interacts 93.0 0.092 2E-06 52.2 3.4 31 97-127 16-46 (366)
471 PRK14527 adenylate kinase; Pro 93.0 0.093 2E-06 51.3 3.6 26 99-124 5-30 (191)
472 PLN02348 phosphoribulokinase 92.9 0.11 2.3E-06 55.7 4.2 30 97-126 46-75 (395)
473 PRK00409 recombination and DNA 92.9 0.16 3.4E-06 60.7 6.0 189 99-307 326-527 (782)
474 PRK13948 shikimate kinase; Pro 92.9 0.1 2.3E-06 50.2 3.7 27 98-124 8-34 (182)
475 PRK15455 PrkA family serine pr 92.8 0.18 3.9E-06 56.4 5.9 30 97-126 100-129 (644)
476 COG3598 RepA RecA-family ATPas 92.8 0.42 9.1E-06 48.9 7.9 57 102-159 91-155 (402)
477 PF03308 ArgK: ArgK protein; 92.8 0.32 7E-06 48.8 7.0 52 98-151 27-78 (266)
478 PRK04182 cytidylate kinase; Pr 92.8 0.095 2.1E-06 50.6 3.4 23 102-124 2-24 (180)
479 KOG0651 26S proteasome regulat 92.8 0.21 4.6E-06 50.8 5.7 29 98-126 164-192 (388)
480 PRK14738 gmk guanylate kinase; 92.7 0.1 2.2E-06 51.7 3.5 27 97-123 10-36 (206)
481 COG0552 FtsY Signal recognitio 92.7 0.61 1.3E-05 48.5 9.0 94 97-195 136-231 (340)
482 cd03116 MobB Molybdenum is an 92.7 0.13 2.7E-06 48.5 3.9 26 101-126 2-27 (159)
483 PRK03731 aroL shikimate kinase 92.6 0.1 2.2E-06 50.0 3.4 24 101-124 3-26 (171)
484 PF13504 LRR_7: Leucine rich r 92.6 0.074 1.6E-06 29.0 1.3 16 540-555 2-17 (17)
485 TIGR00416 sms DNA repair prote 92.6 0.5 1.1E-05 52.8 9.2 40 99-142 93-132 (454)
486 PF13521 AAA_28: AAA domain; P 92.6 0.097 2.1E-06 49.7 3.2 21 103-123 2-22 (163)
487 COG0237 CoaE Dephospho-CoA kin 92.6 0.1 2.2E-06 51.1 3.3 23 100-122 2-24 (201)
488 PRK14737 gmk guanylate kinase; 92.6 0.11 2.4E-06 50.4 3.6 25 99-123 3-27 (186)
489 PF10236 DAP3: Mitochondrial r 92.6 6.3 0.00014 41.7 17.1 49 232-280 258-306 (309)
490 PRK09519 recA DNA recombinatio 92.6 0.42 9.2E-06 56.1 8.8 84 99-195 59-148 (790)
491 COG1763 MobB Molybdopterin-gua 92.6 0.12 2.5E-06 48.4 3.5 27 100-126 2-28 (161)
492 cd02040 NifH NifH gene encodes 92.6 0.21 4.5E-06 52.0 5.8 26 101-126 2-27 (270)
493 PRK13973 thymidylate kinase; P 92.6 0.55 1.2E-05 46.8 8.6 26 101-126 4-29 (213)
494 PRK04196 V-type ATP synthase s 92.5 0.64 1.4E-05 51.6 9.8 95 101-196 144-251 (460)
495 COG1703 ArgK Putative periplas 92.5 0.32 6.9E-06 49.5 6.7 54 97-152 48-101 (323)
496 PRK14493 putative bifunctional 92.5 0.12 2.6E-06 53.4 3.8 26 101-126 2-27 (274)
497 PRK13976 thymidylate kinase; P 92.5 0.47 1E-05 47.0 7.9 25 102-126 2-26 (209)
498 PRK09825 idnK D-gluconate kina 92.4 0.11 2.3E-06 50.0 3.2 24 101-124 4-27 (176)
499 COG4639 Predicted kinase [Gene 92.4 0.26 5.7E-06 45.0 5.3 22 100-121 2-23 (168)
500 PRK13849 putative crown gall t 92.4 0.91 2E-05 45.7 9.9 46 101-150 2-48 (231)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-87 Score=779.81 Aligned_cols=550 Identities=26% Similarity=0.388 Sum_probs=445.4
Q ss_pred hhhhchhhhHHhhhccCCCC------cc-h--hccchhhhHHHhhhhhhhHHHHHHHHHHHHhhhccCC---Ccccc---
Q 048180 2 QDAYKTLDMIRDCCNVETGS------LL-C--WCTCLADYRRRYLVGKNISRIKERVNELTNEFQRNRG---INTVD--- 66 (824)
Q Consensus 2 k~~~~~~ddi~d~~~~~~~~------~~-~--~~~~~~~~~~r~~~~~~i~~i~~~~~~i~~~~~~~~~---~~~~~--- 66 (824)
++..|+++|+++.+.++... ++ + ......-..+++.++..+..+.+|+-++.+..+.+.. +..+.
T Consensus 65 ~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~ 144 (889)
T KOG4658|consen 65 GDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL 144 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc
Confidence 57899999999999766511 10 0 0111111145555555555555665555555444321 11111
Q ss_pred -------ccc--cccchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEE
Q 048180 67 -------RQY--QQGELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIW 137 (824)
Q Consensus 67 -------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~w 137 (824)
... ...+ +|.+..++.+...+.++ +..++||+||||+||||||++++|+... .+.+||.+||
T Consensus 145 ~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d-------~~~iv~i~GMGGvGKTTL~~qi~N~~~~-v~~~Fd~~iW 215 (889)
T KOG4658|consen 145 DPREKVETRPIQSESD-VGLETMLEKLWNRLMED-------DVGIVGIYGMGGVGKTTLARQIFNKFDE-VGNHFDGVIW 215 (889)
T ss_pred cchhhcccCCCCcccc-ccHHHHHHHHHHHhccC-------CCCEEEEECCCcccHHHHHHHHhcccch-hcccCceEEE
Confidence 001 1122 77888888888887653 3399999999999999999999999873 2789999999
Q ss_pred EEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCC--CCCcEEE
Q 048180 138 VEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTLLETGKILLILDNMRKAFSLEEIGIPTL--SNSLRII 215 (824)
Q Consensus 138 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~--~~gs~Ii 215 (824)
|+||+.++...++++|++.++........ ...+.++..+.+.|++|||+|||||||+..+|+.++.|++ .+||||+
T Consensus 216 V~VSk~f~~~~iq~~Il~~l~~~~~~~~~--~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~Kvv 293 (889)
T KOG4658|consen 216 VVVSKEFTTRKIQQTILERLGLLDEEWED--KEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVV 293 (889)
T ss_pred EEEcccccHHhHHHHHHHHhccCCcccch--hhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEE
Confidence 99999999999999999988753332211 1226677788888889999999999999999999986665 4689999
Q ss_pred EEcCChhhhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCC
Q 048180 216 ITSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFD 294 (824)
Q Consensus 216 vTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~ 294 (824)
+|||++.|+.. +++...++++.|+++|||.||.+.+|.......+.++++|++|+++|+|+|||++++|+.|+ .+.+
T Consensus 294 lTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma--~K~t 371 (889)
T KOG4658|consen 294 LTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLA--CKKT 371 (889)
T ss_pred EEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhc--CCCc
Confidence 99999999998 88888999999999999999999999875545566999999999999999999999999999 8999
Q ss_pred hHHHHHHHHHHHhh-ccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhccccc
Q 048180 295 FISWKRALMSELDA-FSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGE 373 (824)
Q Consensus 295 ~~~w~~~~~~~~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~ 373 (824)
.++|+++++.+.+. ....+++.+.+.++|++||+.||++ +|.||+|||+|||||+|++++|+.+||||||+.+
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~------lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~ 445 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE------LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDP 445 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH------HHHHHHhhccCCcccccchHHHHHHHHhccCcCc
Confidence 99999999998876 4446677889999999999999988 9999999999999999999999999999999999
Q ss_pred cccchHHHHhhHHHHHHHHHhcCccccccc--CcCCccccchHHHHHHHhhhc-----cCCceecCCcccceeeccccCC
Q 048180 374 EMEGIDERFGKAKEILEELKDASFLVGIIS--DENEIVKMHPLMFDMASKMEK-----KTPWFFKPGRRLRKFVYEDWSG 446 (824)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~~~mhdl~~dl~~~i~~-----~e~~~~~~~~~~~~~~~~~~~~ 446 (824)
..++..++++|++|+++|++++|+ +... ....+|+|||+||++|.++|+ .++.++..+......|......
T Consensus 446 -~~~~~~~~d~G~~~i~~LV~~~Ll-~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~ 523 (889)
T KOG4658|consen 446 -LDGGETAEDVGYDYIEELVRASLL-IEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWN 523 (889)
T ss_pred -cccccchhcchHHHHHHHHHHHHH-hhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchh
Confidence 677888999999999999999999 6532 234789999999999999999 7777777765666666655557
Q ss_pred CccEEEeccCCCcCCCCccCCCCccEEEcCCCCC-cccCChhhhcCCCCCcEEEecCCC-CccccccccCcccccEEecc
Q 048180 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPL-DLQLDNDFFNSFPNLKILNLSDTS-MGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~L~ 524 (824)
.+|++++.++.+..++....+++|++|.+.+|.. ...++..+|..++.||+|||++|. +.++|.+|+.|.|||||+|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 8999999999999999888888999999999863 677888889999999999999876 78999999999999999998
Q ss_pred cccccccCC-CcccCCCccEEeccCC-CCcccCcccccCCCCcEEeccCcc
Q 048180 525 NCIYLTCLP-SLAELVELMVLDVSGS-GIAEFPDGMNHLTKLLFLNLSRTR 573 (824)
Q Consensus 525 ~c~~~~~lp-~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~ 573 (824)
+ +.+..+| ++++|+.|.+|++..+ .+..+|.....|++||+|.+....
T Consensus 604 ~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 604 D-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred C-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8 5677888 4888888888888877 444555555568888888776654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-67 Score=646.62 Aligned_cols=653 Identities=20% Similarity=0.241 Sum_probs=475.8
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEe---CCc-------
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEA---SYE------- 143 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~---s~~------- 143 (824)
.+|+++.++++...+.. ..++++||+||||||+||||||+++|++...+ |+..+|+.. +..
T Consensus 186 ~vG~~~~l~~l~~lL~l-----~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~----F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLHL-----ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ----FQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred ccchHHHHHHHHHHHcc-----ccCceEEEEEEcCCCCchHHHHHHHHHHHhhc----CCeEEEeeccccccchhhcccc
Confidence 45555555554443321 25679999999999999999999999987554 887777642 111
Q ss_pred ----CC-HHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHHHcCCeEEEEEeCCCcccccchhcC--CCCCCCcEEEE
Q 048180 144 ----DD-LKELQIKIARKIDFVLSSDESVRDNAILLENALQTLLETGKILLILDNMRKAFSLEEIGI--PTLSNSLRIII 216 (824)
Q Consensus 144 ----~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~--~~~~~gs~Iiv 216 (824)
++ ...++++++.++........ .... .+++.+++||+||||||||+..+|+.+.. .+.++||+|||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~---~~~~----~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKI---YHLG----AMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCccc---CCHH----HHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEE
Confidence 11 12344445444322111110 0112 34455669999999999999999998853 33468999999
Q ss_pred EcCChhhhhccccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChH
Q 048180 217 TSPSSSLCRQMKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFI 296 (824)
Q Consensus 217 TTr~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~ 296 (824)
|||++.++..++..++|+++.|++++||+||+++||+... +++++.+++++|+++|+|+||||+++|++|+ +++..
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~---~k~~~ 405 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLR---GRDKE 405 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHc---CCCHH
Confidence 9999999988878889999999999999999999998754 5667899999999999999999999999998 45789
Q ss_pred HHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhcccccccc
Q 048180 297 SWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGEEME 376 (824)
Q Consensus 297 ~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~ 376 (824)
+|+.+++++.... +..|.++|++||++|+++. .|.||+++|+||.+..++ .+..|+|++.+..
T Consensus 406 ~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~-----~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--- 468 (1153)
T PLN03210 406 DWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKK-----DKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--- 468 (1153)
T ss_pred HHHHHHHHHHhCc------cHHHHHHHHHhhhccCccc-----hhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---
Confidence 9999999887532 3579999999999998643 899999999999887654 3778888876554
Q ss_pred chHHHHhhHHHHHHHHHhcCcccccccCcCCccccchHHHHHHHhhhccCCceecCCcccceeec---------cccCCC
Q 048180 377 GIDERFGKAKEILEELKDASFLVGIISDENEIVKMHPLMFDMASKMEKKTPWFFKPGRRLRKFVY---------EDWSGD 447 (824)
Q Consensus 377 ~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdl~~dl~~~i~~~e~~~~~~~~~~~~~~~---------~~~~~~ 447 (824)
+..++.|+++||+ +. ....++|||+++++|+++++++. ..++.+.+-+.. ......
T Consensus 469 ---------~~~l~~L~~ksLi-~~---~~~~~~MHdLl~~~~r~i~~~~~--~~~~~r~~l~~~~di~~vl~~~~g~~~ 533 (1153)
T PLN03210 469 ---------NIGLKNLVDKSLI-HV---REDIVEMHSLLQEMGKEIVRAQS--NEPGEREFLVDAKDICDVLEDNTGTKK 533 (1153)
T ss_pred ---------hhChHHHHhcCCE-EE---cCCeEEhhhHHHHHHHHHHHhhc--CCCCcceeEeCHHHHHHHHHhCcccce
Confidence 1238899999999 66 23579999999999999987752 111111111100 011223
Q ss_pred ccEEEeccCCCcCCCC----ccCCC-------------------------------CccEEEcCCCCCcccCChhhhcCC
Q 048180 448 VERVSLMGNNLRELRT----CPMFC-------------------------------KLTTLFLQGNPLDLQLDNDFFNSF 492 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~----~~~~~-------------------------------~L~~L~l~~~~~~~~~~~~~~~~l 492 (824)
++.+++..+.+.++.. +.+++ +||.|.+.++. ...+|..+ .+
T Consensus 534 v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~ 610 (1153)
T PLN03210 534 VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RP 610 (1153)
T ss_pred eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--Cc
Confidence 3444333222211100 22233 46666666653 55666543 46
Q ss_pred CCCcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccEEeccCC-CCcccCcccccCCCCcEEeccC
Q 048180 493 PNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGS-GIAEFPDGMNHLTKLLFLNLSR 571 (824)
Q Consensus 493 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~ 571 (824)
.+|+.|+|+++.+..+|..+..+.+|++|+|++|..++.+|.++.+++|++|++++| .+..+|..++++++|++|++++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 789999999999988998899999999999999888999999999999999999998 6789999999999999999998
Q ss_pred cc-ccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhccccee
Q 048180 572 TR-VRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQS 650 (824)
Q Consensus 572 ~~-~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 650 (824)
|. +..+|.. + ++++|+.|++++|.... .++ ...++|+.|++..+.+..+|..+ .+.+|..
T Consensus 691 c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~-----------~~p---~~~~nL~~L~L~~n~i~~lP~~~---~l~~L~~ 751 (1153)
T PLN03210 691 CENLEILPTG-I-NLKSLYRLNLSGCSRLK-----------SFP---DISTNISWLDLDETAIEEFPSNL---RLENLDE 751 (1153)
T ss_pred CCCcCccCCc-C-CCCCCCEEeCCCCCCcc-----------ccc---cccCCcCeeecCCCccccccccc---ccccccc
Confidence 75 4777764 3 79999999999985221 111 12467888999988887776544 3456666
Q ss_pred EEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhh
Q 048180 651 YKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWC 728 (824)
Q Consensus 651 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~ 728 (824)
|.+..... ..+ ......++......+++|+.|.+.+|.....+ ++.++++|+.|++++|+.++.+|...
T Consensus 752 L~l~~~~~--~~l----~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--- 822 (1153)
T PLN03210 752 LILCEMKS--EKL----WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--- 822 (1153)
T ss_pred ccccccch--hhc----cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---
Confidence 65542211 000 00001111112334678999999999877655 57889999999999999999986532
Q ss_pred hccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCcccc
Q 048180 729 CLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLW 808 (824)
Q Consensus 729 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~ 808 (824)
.+++|+.|++++|..+..++. ..++|+.|+|+++ .++.+|..+..+++|+.|++.+|++|+.+|..+.
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~-----------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD-----------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred CccccCEEECCCCCccccccc-----------cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 689999999999988876652 2357888888876 6777888888888888888888888888888888
Q ss_pred ccccceeccCCCC
Q 048180 809 VENYAQKLKSPCS 821 (824)
Q Consensus 809 ~l~~L~~L~~~~~ 821 (824)
.+++|+.+++.+|
T Consensus 891 ~L~~L~~L~l~~C 903 (1153)
T PLN03210 891 KLKHLETVDFSDC 903 (1153)
T ss_pred cccCCCeeecCCC
Confidence 8888888888887
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.2e-44 Score=379.49 Aligned_cols=265 Identities=28% Similarity=0.443 Sum_probs=212.2
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
++.++|+|+||||+||||||+++|++... +.+|+.++||.++...+...++.+|+.+++...... ........+.+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~--~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~ 93 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRI--KNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI-SDPKDIEELQDQ 93 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHH--CCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS-SCCSSHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccc--cccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 67899999999999999999999998764 688999999999999999999999999998653322 112233446777
Q ss_pred HHHHHcCCeEEEEEeCCCcccccchhcCCC--CCCCcEEEEEcCChhhhhcccc-ccccccCCCChHHHHHHHHHHhcCc
Q 048180 178 LQTLLETGKILLILDNMRKAFSLEEIGIPT--LSNSLRIIITSPSSSLCRQMKC-RERFALNLLTDEEAYLLLINEVGLA 254 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~--~~~gs~IivTTr~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~ 254 (824)
+++.++++++||||||||+..+|+.+..++ ...|++||||||+..++..+.. ...|++++|+.++|++||.+.++..
T Consensus 94 l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 94 LRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp HHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred chhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 788888999999999999999998875433 3468999999999999887655 5789999999999999999999876
Q ss_pred CCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccc
Q 048180 255 GKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYS 334 (824)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 334 (824)
....++.+++.+++|+++|+|+||||+++|++|+ .+.+..+|+++++++.............+..++.+||+.||++
T Consensus 174 ~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~--~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~- 250 (287)
T PF00931_consen 174 ESESPEDLEDLAKEIVEKCGGLPLALKLIASYLR--SKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDE- 250 (287)
T ss_dssp S----TTSCTHHHHHHHHTTT-HHHHHHHHHHHH--HHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-
T ss_pred cccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccceechhcCCcc-
Confidence 5224566678899999999999999999999997 3447899999999888666443335578999999999999999
Q ss_pred cCCcchhhhhhhhhccCCCcccchHHHHHHHHHhccccc
Q 048180 335 SYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGE 373 (824)
Q Consensus 335 ~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~ 373 (824)
+|.||+|||+||+++.|+++.++++|+|||||.+
T Consensus 251 -----~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 251 -----LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp -----CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred -----HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999999999987
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=8e-24 Score=261.47 Aligned_cols=345 Identities=19% Similarity=0.191 Sum_probs=187.6
Q ss_pred CCccEEEeccCCCc-CCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc-cccccccCcccccEE
Q 048180 446 GDVERVSLMGNNLR-ELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG-ILPKSLSSLKYLTVL 521 (824)
Q Consensus 446 ~~~~~L~l~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L 521 (824)
..++.|++.+|.+. .+|. +..+++|++|++++|.....+|. ..+++|++|+|++|.+. .+|..++++.+|++|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 34555555555443 2333 23455555555555544333442 23455555555555542 455556666666666
Q ss_pred ecccccccccCC-CcccCCCccEEeccCCCCc-ccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 522 LLQNCIYLTCLP-SLAELVELMVLDVSGSGIA-EFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 522 ~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
++++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|.+....+..++++++|++|++++|.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 666655444555 3666666666666666554 45556666666666666666554322333566666666666665432
Q ss_pred cccccccchhhhhchHhhhcCCCccEEEEEecCccc-hhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCC
Q 048180 600 CLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS-FKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDP 678 (824)
Q Consensus 600 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 678 (824)
. ..+..++.+++|+.|+++.|.+.. .+..+ ..+.+|+.|+++.+.+... ++. .
T Consensus 250 ~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~------------~p~-~ 303 (968)
T PLN00113 250 G-----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGE------------IPE-L 303 (968)
T ss_pred c-----------ccChhHhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccC------------CCh-h
Confidence 2 123345666666666666655432 22222 2345556655554432110 011 1
Q ss_pred ccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccC----
Q 048180 679 IWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDD---- 752 (824)
Q Consensus 679 ~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~---- 752 (824)
...+++|+.|++.+|...... .+.++++|+.|++++|.-...+| ..++.+++|+.|++++|.-...++....
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 123456667776665543222 35566677777776654333332 2355566666666665532222221000
Q ss_pred ------------CCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCC
Q 048180 753 ------------DENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPC 820 (824)
Q Consensus 753 ------------~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~ 820 (824)
+..+..+..+++|+.|++++|.-...+|..+..+++|+.|++++|.--..+|..+..+++|+.|++.+
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 11222344677888888888754446676777788888888888654445666677788888888887
Q ss_pred C
Q 048180 821 S 821 (824)
Q Consensus 821 ~ 821 (824)
|
T Consensus 462 n 462 (968)
T PLN00113 462 N 462 (968)
T ss_pred c
Confidence 6
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.9e-23 Score=258.24 Aligned_cols=351 Identities=20% Similarity=0.156 Sum_probs=232.6
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCC-ccccccccCcccccEEec
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSM-GILPKSLSSLKYLTVLLL 523 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-~~lp~~i~~l~~L~~L~L 523 (824)
...+++|++.+|++........+++|++|++++|.....+|.. +..+++|++|+|++|.+ ..+|..++++.+|++|+|
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 4578888888887765444456778888888888765566655 57788888888888886 467778888888888888
Q ss_pred ccccccccCC-CcccCCCccEEeccCCCCc-ccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccc
Q 048180 524 QNCIYLTCLP-SLAELVELMVLDVSGSGIA-EFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 524 ~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~ 601 (824)
++|.....+| .++++++|++|++++|++. .+|..++++++|++|++++|.+....+..++++++|++|++++|.+...
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 8877666777 4888888888888888776 6788888888888888888877544444578888888888888764431
Q ss_pred cccccchhhhhchHhhhcCCCccEEEEEecCccc-hhhhhhhhhcccceeEEEEeccCCCccccc-cchhhh--------
Q 048180 602 PRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS-FKEYISSQHWLWLQSYKFSVGALGKGKLRG-NTLAFM-------- 671 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~-------- 671 (824)
.+..+..+++|+.|+++.|.+.. .|..+ ..+++|+.|.+..+.+....... .....+
T Consensus 276 -----------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 276 -----------IPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred -----------CchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 23445666777777777666542 33333 23455666665544331110000 000000
Q ss_pred ---ccCCCCCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhh
Q 048180 672 ---KEFPNDPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEK 746 (824)
Q Consensus 672 ---~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 746 (824)
..++. .....++|+.|++++|...... ++..+++|+.|++++|.-...+| ..+..+++|+.|++++|.-...
T Consensus 343 ~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 343 KFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP--KSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCcCcCCh-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC--HHHhCCCCCCEEECcCCEeeeE
Confidence 00010 1123456666666665433222 34456677777776654333332 2456788888888887753332
Q ss_pred hhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 747 VIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 747 i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
++ ..+..+|+|+.|+++++.-...++.....+++|+.|++++|.-...+|..+ ..++|+.|++.+|
T Consensus 420 ~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n 485 (968)
T PLN00113 420 LP--------SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRN 485 (968)
T ss_pred CC--------hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCC
Confidence 22 345578999999999996555566667789999999999998777788754 5689999999887
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=3.1e-25 Score=233.22 Aligned_cols=356 Identities=21% Similarity=0.197 Sum_probs=266.6
Q ss_pred ceecCCcccceeecc-ccCCCccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCC-cccCChhhhcCCCCCcEEEecCCC
Q 048180 428 WFFKPGRRLRKFVYE-DWSGDVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPL-DLQLDNDFFNSFPNLKILNLSDTS 504 (824)
Q Consensus 428 ~~~~~~~~~~~~~~~-~~~~~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~ 504 (824)
++......+..+|.+ ....+++||++.+|++..+.. +..+|.||++.+..|+. ...+|+.+| .++.|.+||||.|.
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNq 114 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQ 114 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhh
Confidence 444455556666765 445789999999999887765 88999999999998875 456888875 79999999999999
Q ss_pred CccccccccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhh
Q 048180 505 MGILPKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLV 582 (824)
Q Consensus 505 ~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l 582 (824)
+.+.|..+..-.++-+|+|++| .+..+| + +-+|.-|-.|||++|.+..+|..+..|.+|+.|.+++|.+..+-...+
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 9999999999999999999994 789999 4 889999999999999999999999999999999999998866544446
Q ss_pred cCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCcc
Q 048180 583 TSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGK 662 (824)
Q Consensus 583 ~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 662 (824)
..|++|++|++++.+- ....++.++..|.+|+.++++.|+++.+|..+ -++.+|+.|+++.+.+....
T Consensus 194 PsmtsL~vLhms~TqR----------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl--y~l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQR----------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECL--YKLRNLRRLNLSGNKITELN 261 (1255)
T ss_pred ccchhhhhhhcccccc----------hhhcCCCchhhhhhhhhccccccCCCcchHHH--hhhhhhheeccCcCceeeee
Confidence 6788899999988641 22245667889999999999999999888766 56678888888766552222
Q ss_pred ccccchhhhccCCCCCccCCcCcceeeecccccceee-ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccc
Q 048180 663 LRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM-TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANC 741 (824)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~ 741 (824)
.. ...-.+|++|+++.+.-..-+ .+..|+.|++|++.+ +++..-..+..++.|.+|+.+...++
T Consensus 262 ~~--------------~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 262 MT--------------EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred cc--------------HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc
Confidence 10 011246777777776544333 466678888887765 44443333345777888888877765
Q ss_pred cchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 742 RNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 742 ~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
.++-+|+ .+..+++|+.|.|.++ .|..+|..+..+|-|+.|++...|+|..-|..-..-++|+--+|+=+
T Consensus 327 -~LElVPE--------glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFS 396 (1255)
T KOG0444|consen 327 -KLELVPE--------GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFS 396 (1255)
T ss_pred -ccccCch--------hhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeeccee
Confidence 5665553 4556788888888766 56678888888888888888888888765543223355655555544
Q ss_pred c
Q 048180 822 L 822 (824)
Q Consensus 822 ~ 822 (824)
+
T Consensus 397 L 397 (1255)
T KOG0444|consen 397 L 397 (1255)
T ss_pred h
Confidence 3
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=9.2e-23 Score=213.77 Aligned_cols=336 Identities=20% Similarity=0.228 Sum_probs=188.9
Q ss_pred CccEEEeccCCCcCCCCccCC-CCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecc
Q 048180 447 DVERVSLMGNNLRELRTCPMF-CKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQ 524 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~ 524 (824)
+++.+++..|.++.+|.+... .+|..|++.+|- +..+..+-+..++.||+||||.|.|..+|. ++..-.++++|+|+
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 455555555555555553332 235555555552 344444444455555555555555555543 33444455555555
Q ss_pred cccccccCC--CcccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccc
Q 048180 525 NCIYLTCLP--SLAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 525 ~c~~~~~lp--~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~ 601 (824)
+| .++.+. .+..|.+|-+|.|+.|.++.+|.. +.+|++|+.|++..|.+....--.|.+|.+|+.|.+..|.+..+
T Consensus 182 ~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 182 SN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 53 344444 255555555555555555555543 33355555555555554322222245555555555555544333
Q ss_pred cccccchhhhhchHhhhcCCCccEEEEEecCccchh-hhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCcc
Q 048180 602 PRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFK-EYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIW 680 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 680 (824)
.++ .+-.+.+++.|++..|.+..+. .++ -.++.|+.|+++.+.+..-.. ..| .
T Consensus 261 ~DG-----------~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~rih~-----------d~W--s 314 (873)
T KOG4194|consen 261 DDG-----------AFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQRIHI-----------DSW--S 314 (873)
T ss_pred cCc-----------ceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhhheeec-----------chh--h
Confidence 221 1334455555555555444321 111 223444444444443311111 112 1
Q ss_pred CCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCC
Q 048180 681 LPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNP 758 (824)
Q Consensus 681 ~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 758 (824)
..++|+.|+++++.-.... .+..|..|+.|.|++ +++.++ ..+.+..+.+|+.|+|+++. +.... +++ ...
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~I-EDa---a~~ 387 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCI-EDA---AVA 387 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEE-ecc---hhh
Confidence 3477888888876533322 456688899999988 577777 45667889999999999873 32222 111 124
Q ss_pred cccccccCeEeccCCcchhcccc-CcccCCCccEEEecCCCCcCCC-CccccccccceeccCCC
Q 048180 759 QVCWRSLRKLILSNLPELRFMYS-GEAQCDFVQTIGIWSCCKLERF-PISLWVENYAQKLKSPC 820 (824)
Q Consensus 759 ~~~~p~L~~L~l~~~~~L~~~~~-~~~~lpsL~~L~i~~C~~L~~l-p~~~~~l~~L~~L~~~~ 820 (824)
+.++|+|++|.+.++ +++++|. .+..+++|++|++.+. .+.++ |..+..+ .|++|.+..
T Consensus 388 f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hccchhhhheeecCc-eeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence 456999999999998 7999976 4778999999999885 56665 4457676 888887654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.1e-20 Score=231.15 Aligned_cols=314 Identities=21% Similarity=0.234 Sum_probs=240.8
Q ss_pred cCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC-CccccccccCcccccEEe
Q 048180 444 WSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS-MGILPKSLSSLKYLTVLL 522 (824)
Q Consensus 444 ~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~ 522 (824)
.+.+++.|.+.++.+..+|......+|+.|++.+|. +..++.++ ..+++|++|+|+++. +..+|. ++.+++|++|+
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-cccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 356799999999999999886678899999999986 66677664 789999999999886 677774 88999999999
Q ss_pred cccccccccCC-CcccCCCccEEeccCC-CCcccCcccccCCCCcEEeccCccc-cccchhhhcCCCCCcEEEeecCccc
Q 048180 523 LQNCIYLTCLP-SLAELVELMVLDVSGS-GIAEFPDGMNHLTKLLFLNLSRTRV-RNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 523 L~~c~~~~~lp-~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~-~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
|++|..+..+| +++++++|+.|++++| .++.+|..+ ++++|++|++++|.. ..+|. ...+|++|++.+|.+.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE 738 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence 99999999999 5999999999999998 788999877 899999999999865 44442 2468999999998766
Q ss_pred cccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhh------hhhhcccceeEEEEeccCCCccccccchhhhcc
Q 048180 600 CLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYI------SSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKE 673 (824)
Q Consensus 600 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 673 (824)
.+|.. ..+++|+.|.+..+....+.... ......+|+.|.++.+.. ...
T Consensus 739 ~lP~~-------------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~------------l~~ 793 (1153)
T PLN03210 739 EFPSN-------------LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS------------LVE 793 (1153)
T ss_pred ccccc-------------ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC------------ccc
Confidence 55422 13566776666553322211100 011234667776653321 111
Q ss_pred CCCCCccCCcCcceeeecccccceeec-cccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccC
Q 048180 674 FPNDPIWLPWNTSELLLVHCNAVTQMT-IPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDD 752 (824)
Q Consensus 674 l~~~~~~~~~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~ 752 (824)
+|.. ...+++|+.|++.+|..++.++ ..++++|+.|++++|..+..+|. ..++|+.|+|+++ .++.+|.
T Consensus 794 lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~--- 863 (1153)
T PLN03210 794 LPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPW--- 863 (1153)
T ss_pred cChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChH---
Confidence 2222 2356889999999999887663 23689999999999999887754 2578999999876 5666653
Q ss_pred CCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCc
Q 048180 753 DENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPI 805 (824)
Q Consensus 753 ~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~ 805 (824)
.+..+++|+.|++++|++|..+|.....+++|+.+++++|++|..++.
T Consensus 864 -----si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 864 -----WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred -----HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 456899999999999999999999899999999999999999986653
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=6.6e-21 Score=200.00 Aligned_cols=338 Identities=17% Similarity=0.180 Sum_probs=232.9
Q ss_pred cCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccE
Q 048180 444 WSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTV 520 (824)
Q Consensus 444 ~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~ 520 (824)
.+...+.|++++|++..+.. +.++++|+.+.+..|. +..+|.. .....+|..|+|.+|.|.++.. .+..++.||.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 34566777888887776654 6777888888887774 5666652 2345568888888887765543 5677778888
Q ss_pred EecccccccccCC--CcccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 521 LLLQNCIYLTCLP--SLAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 521 L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
|||+.| .+.++| ++..=.++++|+|++|.|+.+-. .+..+.+|-.|.++.|.++.+|...|++|++|+.|++..|.
T Consensus 154 lDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 888874 566666 46666778888888887776654 36677778888888888888887778888888888887776
Q ss_pred cccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCC
Q 048180 598 LLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPND 677 (824)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 677 (824)
+... ++ -.+..|++|+.|.+..|++..+.+-. --.+.+++.|++..+.+. .+...
T Consensus 233 iriv-e~----------ltFqgL~Sl~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~N~l~-------------~vn~g 287 (873)
T KOG4194|consen 233 IRIV-EG----------LTFQGLPSLQNLKLQRNDISKLDDGA-FYGLEKMEHLNLETNRLQ-------------AVNEG 287 (873)
T ss_pred eeee-hh----------hhhcCchhhhhhhhhhcCcccccCcc-eeeecccceeecccchhh-------------hhhcc
Confidence 4331 11 23566777777777777766553321 013356667766655441 11122
Q ss_pred CccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCC
Q 048180 678 PIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDEN 755 (824)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 755 (824)
..-.+..|+.|+++.+.-...- .....++|+.|+|++ +.++.+++ +.+..|..|+.|.|+++ .+..+.+
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~e------ 358 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHN-SIDHLAE------ 358 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCCh-hHHHHHHHhhhhccccc-chHHHHh------
Confidence 2234577888888876533221 344578999999987 67788754 56778999999999977 5666653
Q ss_pred CCCcccccccCeEeccCCcchhc-c---ccCcccCCCccEEEecCCCCcCCCCc-cccccccceeccCCCC
Q 048180 756 SNPQVCWRSLRKLILSNLPELRF-M---YSGEAQCDFVQTIGIWSCCKLERFPI-SLWVENYAQKLKSPCS 821 (824)
Q Consensus 756 ~~~~~~~p~L~~L~l~~~~~L~~-~---~~~~~~lpsL~~L~i~~C~~L~~lp~-~~~~l~~L~~L~~~~~ 821 (824)
..+.++.+|++|+|+++. +.. + ...+..+|+|++|.+.| ++|+++|. .+..+.+|+.|++-+-
T Consensus 359 -~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 359 -GAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred -hHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 245578999999999874 321 1 12356799999999999 79999998 4889999999998653
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=7.6e-22 Score=207.95 Aligned_cols=349 Identities=19% Similarity=0.215 Sum_probs=245.9
Q ss_pred CCccEEEeccCCCc--CCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEe
Q 048180 446 GDVERVSLMGNNLR--ELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLL 522 (824)
Q Consensus 446 ~~~~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 522 (824)
+-+|.+++++|+++ .+|. ...++.++-|.+.... +..+|+. ++.+.+|..|.++.|.+.++...++.|+.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 45788889988876 3554 6778889999998764 6778887 5889999999999999988888889999999999
Q ss_pred cccccc-cccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccc
Q 048180 523 LQNCIY-LTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 523 L~~c~~-~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 600 (824)
++.|+. -.-+| .|-+|..|.+|||++|++++.|.++.+-+++..|++++|++..+|...+-+|+.|-.|++++|.+..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence 998642 23456 5999999999999999999999999999999999999999999998889999999999999987554
Q ss_pred ccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCcccccc--chhh-------h
Q 048180 601 LPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGN--TLAF-------M 671 (824)
Q Consensus 601 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~-------~ 671 (824)
+ +..+..|.+|++|.+++|.+..+. .-..+.+..|+.|.++...-...++... .... +
T Consensus 165 L------------PPQ~RRL~~LqtL~Ls~NPL~hfQ-LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 165 L------------PPQIRRLSMLQTLKLSNNPLNHFQ-LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred c------------CHHHHHHhhhhhhhcCCChhhHHH-HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 3 556888999999999998765321 1112334455555554432211111110 0000 0
Q ss_pred ccCCCCC--ccCCcCcceeeecccccceee-ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhh
Q 048180 672 KEFPNDP--IWLPWNTSELLLVHCNAVTQM-TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVI 748 (824)
Q Consensus 672 ~~l~~~~--~~~~~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~ 748 (824)
+.+|..+ .-..++|+.|+++++...+-- ......+|++|+++. +.++.+|. .+..|+.|+.|.+.++ ++.
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~n~N-kL~--- 304 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYANNN-KLT--- 304 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHhccC-ccc---
Confidence 1111111 112344555555554322111 233345555555554 34555532 3556666666666544 221
Q ss_pred cccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 749 EQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 749 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
.+++++.++.+..|+.+...++ +|+-+|.++.-|+.|+.|.++ |+.|-.+|+.+.-++-|++||++.-
T Consensus 305 ---FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 305 ---FEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred ---ccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCC
Confidence 1445667788888999888887 788889999999999999885 6889999999999999999988753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.8e-21 Score=195.72 Aligned_cols=341 Identities=21% Similarity=0.271 Sum_probs=207.5
Q ss_pred CccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEeccc
Q 048180 447 DVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 525 (824)
++..+.+.+|.+..+|. ...++.|+.|++..| ....+|+.+ +.+..|..|+|..|.+..+| .|+.|..|..|.+..
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPEL-GGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE 237 (565)
T ss_pred HHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhh-cchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc
Confidence 44556666777766665 444778888888877 477888874 88888888999999988888 688888899888887
Q ss_pred ccccccCC-C-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccc
Q 048180 526 CIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPR 603 (824)
Q Consensus 526 c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~ 603 (824)
+.+..+| . ..+|.+|.+||++.|+++++|.+++.|++|.+|++++|.++.+|.. +|+| +|+.|-+.||.+..+-+
T Consensus 238 -N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 238 -NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred -cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchHHHHH
Confidence 4678888 4 5589999999999999999999999999999999999999999876 8999 89999999988655433
Q ss_pred cccchhhhhchHhhh------------------------------cCCCccEEEEEecCccchhhhhhhhhc-ccceeEE
Q 048180 604 SLMQEDYAAFIEDVR------------------------------KLRNLNVFDFTFVSLQSFKEYISSQHW-LWLQSYK 652 (824)
Q Consensus 604 ~~~~~~~~~~~~~l~------------------------------~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~ 652 (824)
...+.+.....+.+. .+.+.+.|+++.-.++..|...-.... ......+
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence 332222222222222 223333344433333333332211111 1111222
Q ss_pred EEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhc
Q 048180 653 FSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCL 730 (824)
Q Consensus 653 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l 730 (824)
++-+ .+.++|..... ...+.+.-+.+++...++ .+..+++|..|+|++ +-+.++|.. .+.+
T Consensus 395 fskN-------------qL~elPk~L~~-lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e--~~~l 457 (565)
T KOG0472|consen 395 FSKN-------------QLCELPKRLVE-LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEE--MGSL 457 (565)
T ss_pred cccc-------------hHhhhhhhhHH-HHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchh--hhhh
Confidence 2211 11222221110 111222222233333333 366789999999987 566777543 5578
Q ss_pred cccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcccc-CcccCCCccEEEecCCCCcCCCCccccc
Q 048180 731 RNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYS-GEAQCDFVQTIGIWSCCKLERFPISLWV 809 (824)
Q Consensus 731 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~-~~~~lpsL~~L~i~~C~~L~~lp~~~~~ 809 (824)
..|+.|+|+.+ ....+|.. .-....|+.+..++. .+.+++. ++.++..|..|++.+ +.+..+|..+++
T Consensus 458 v~Lq~LnlS~N-rFr~lP~~--------~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgn 526 (565)
T KOG0472|consen 458 VRLQTLNLSFN-RFRMLPEC--------LYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGN 526 (565)
T ss_pred hhhheeccccc-ccccchHH--------HhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCC-CchhhCChhhcc
Confidence 88999999876 33333320 001122333333333 4444433 355666666666655 456666666666
Q ss_pred cccceeccCCCC
Q 048180 810 ENYAQKLKSPCS 821 (824)
Q Consensus 810 l~~L~~L~~~~~ 821 (824)
+++|+.|+++|-
T Consensus 527 mtnL~hLeL~gN 538 (565)
T KOG0472|consen 527 MTNLRHLELDGN 538 (565)
T ss_pred ccceeEEEecCC
Confidence 666666666553
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=9.4e-20 Score=201.67 Aligned_cols=343 Identities=20% Similarity=0.228 Sum_probs=207.4
Q ss_pred ccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccc
Q 048180 448 VERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c 526 (824)
+..|++++|.+..+|. +..+++|+.|.++.| .+..+|.+ ..++++|++|.|.++.+..+|.++..+.+|+||+++.|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 5666677776666665 566666666766666 35555543 35666666666666666666666666666666666654
Q ss_pred cccccCCC-cc----------------------------------------cCCCcc-EEeccCCCCccc-----Cc---
Q 048180 527 IYLTCLPS-LA----------------------------------------ELVELM-VLDVSGSGIAEF-----PD--- 556 (824)
Q Consensus 527 ~~~~~lp~-i~----------------------------------------~L~~L~-~L~l~~~~l~~l-----p~--- 556 (824)
.. ..+|. +. ...+|+ +|||++|.+..+ +.
T Consensus 125 ~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~ 203 (1081)
T KOG0618|consen 125 HF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEV 203 (1081)
T ss_pred cc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhh
Confidence 32 11111 10 011122 255554432200 00
Q ss_pred --------------------------------ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 557 --------------------------------GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 557 --------------------------------~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
.-..-.+|++++++.+.+..+| ..++.+.+|+.+....|.+..++..
T Consensus 204 l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~r 282 (1081)
T KOG0618|consen 204 LHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLR 282 (1081)
T ss_pred hhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHH
Confidence 0011235666777777777777 5588888888888888876554322
Q ss_pred cc-----------chhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhcc
Q 048180 605 LM-----------QEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKE 673 (824)
Q Consensus 605 ~~-----------~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 673 (824)
.. .......+..+..+++|++|++..|.+..+|..........|..|+.+.+.+ +.
T Consensus 283 i~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-------------~~ 349 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL-------------ST 349 (1081)
T ss_pred HhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc-------------cc
Confidence 11 1122233444556777777777777777766644322222333333332222 11
Q ss_pred CCCCCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhccc
Q 048180 674 FPNDPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQD 751 (824)
Q Consensus 674 l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~ 751 (824)
++.......+.|+.|.+.++.-.... .+.++++|+.|+|++ +.++.+| ...+.+++.|++|+++++ +|+.++.
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fp-as~~~kle~LeeL~LSGN-kL~~Lp~-- 424 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFP-ASKLRKLEELEELNLSGN-KLTTLPD-- 424 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCC-HHHHhchHHhHHHhcccc-hhhhhhH--
Confidence 22222334567888888776544333 567899999999998 6777775 456788999999999998 7888874
Q ss_pred CCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCC--CccccccccceeccCCCCc
Q 048180 752 DDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERF--PISLWVENYAQKLKSPCSL 822 (824)
Q Consensus 752 ~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~l--p~~~~~l~~L~~L~~~~~~ 822 (824)
.+..++.|++|...++ .+..+| .+..+|.|+.++++ |++|+.+ |..... ++|+.||+.|-.
T Consensus 425 ------tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 425 ------TVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ------HHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCc
Confidence 3336778888877666 577777 67778888888886 6777753 333222 688888887753
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1e-19 Score=183.25 Aligned_cols=237 Identities=25% Similarity=0.317 Sum_probs=116.2
Q ss_pred ccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccc
Q 048180 448 VERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c 526 (824)
+..+.+.+|++..+.. ...+..+.+|.++.|. ...+|+.+ +.+..+..|+.+.+++..+|+.++.+..|+.|+.+.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 3444445554444432 4555555555555554 34444443 4455555555555555555555555555555555553
Q ss_pred cccccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhh----------------------hc
Q 048180 527 IYLTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHL----------------------VT 583 (824)
Q Consensus 527 ~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~----------------------l~ 583 (824)
. ..++| +++.+..|+.|+..+|++..+|.++.++.+|..|++.+|.+..+|+.. ++
T Consensus 125 ~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred c-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 2 23333 355555555555555555555555555555555555555555554443 44
Q ss_pred CCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccc
Q 048180 584 SLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKL 663 (824)
Q Consensus 584 ~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 663 (824)
.|.+|..|++..|.+..+| +++.++.|..+.+..|.++.+|.... .++.++..|+++.+.+
T Consensus 204 ~l~~L~~LyL~~Nki~~lP-------------ef~gcs~L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRdNkl----- 264 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLP-------------EFPGCSLLKELHVGENQIEMLPAEHL-KHLNSLLVLDLRDNKL----- 264 (565)
T ss_pred chhhhHHHHhhhcccccCC-------------CCCccHHHHHHHhcccHHHhhHHHHh-cccccceeeecccccc-----
Confidence 4444444444444433221 33344444444444444444433331 1233444444443333
Q ss_pred cccchhhhccCCCCCccCCcCcceeeecccccceee-ccccCCCCCEEEEecCC
Q 048180 664 RGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM-TIPNLQNLKFLEIFNCE 716 (824)
Q Consensus 664 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~L~~c~ 716 (824)
+++|.. .....+|+.|+++++.-..-+ .++++ .|++|-+.|.+
T Consensus 265 --------ke~Pde-~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 265 --------KEVPDE-ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred --------ccCchH-HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 222211 123566777887766533322 56777 77777777754
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=2.1e-18 Score=191.18 Aligned_cols=342 Identities=21% Similarity=0.189 Sum_probs=170.6
Q ss_pred ccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEeccc
Q 048180 448 VERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 525 (824)
+.++++..|-+...|. ..+.-+|.+|++++|. ...+|.. +..+.+|+.|+++.|-+.++|.+++++.+|++|.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~-~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ-ISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccc-cccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 4555555554333222 3333446666666664 4445543 2456666666666666666666666666666666664
Q ss_pred ccccccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCcc-ccccchhhhcCCCCCcEEEeecCccccccc
Q 048180 526 CIYLTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTR-VRNFPLHLVTSLHNLQEFSMIGCDLLCLPR 603 (824)
Q Consensus 526 c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~-~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~ 603 (824)
+.+..+| ++..+++|+.||+++|.+...|.-+..+..+..+..++|. +.. ++... ++.+++..+.+..
T Consensus 101 -n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l~~n~l~~--- 170 (1081)
T KOG0618|consen 101 -NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDLRLNVLGG--- 170 (1081)
T ss_pred -chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhhhhhhccc---
Confidence 4555666 4666666666666666666666666666666666666551 111 11111 3334333332111
Q ss_pred cccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccc-----cchhhhccCCCCC
Q 048180 604 SLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRG-----NTLAFMKEFPNDP 678 (824)
Q Consensus 604 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~~~l~~~~ 678 (824)
.++.++..+++ .|+++.|.+... ...++..|+.+....+.+......+ ....++.......
T Consensus 171 --------~~~~~i~~l~~--~ldLr~N~~~~~----dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 171 --------SFLIDIYNLTH--QLDLRYNEMEVL----DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV 236 (1081)
T ss_pred --------chhcchhhhhe--eeecccchhhhh----hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc
Confidence 22333344443 456665554411 1111122222211111110000000 0000000001112
Q ss_pred ccCCcCcceeeecccccceee-ccccCCCCCEEEEecC----------------------CCccccccchhhhhccccce
Q 048180 679 IWLPWNTSELLLVHCNAVTQM-TIPNLQNLKFLEIFNC----------------------EGLKYLFKYGVWCCLRNLEE 735 (824)
Q Consensus 679 ~~~~~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~L~~c----------------------~~l~~l~~~~~l~~l~~L~~ 735 (824)
...|.+|++++++.+....-+ |+..+.+|+.|.+.+. +.++.+|+ .+..+++|++
T Consensus 237 ~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~t 314 (1081)
T KOG0618|consen 237 HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRT 314 (1081)
T ss_pred ccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeee
Confidence 233556666666544322211 3333344443333321 11122221 1223555555
Q ss_pred eccccccchhhhhcccC------------------------------------------CCCCCCcccccccCeEeccCC
Q 048180 736 LVIANCRNLEKVIEQDD------------------------------------------DENSNPQVCWRSLRKLILSNL 773 (824)
Q Consensus 736 L~l~~~~~l~~i~~~~~------------------------------------------~~~~~~~~~~p~L~~L~l~~~ 773 (824)
|+|..+ ++.+++.... +.....+.+|++|+.|+|+++
T Consensus 315 LdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 315 LDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 555433 2222221110 222334567899999999998
Q ss_pred cchhccccC-cccCCCccEEEecCCCCcCCCCccccccccceeccCCC
Q 048180 774 PELRFMYSG-EAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPC 820 (824)
Q Consensus 774 ~~L~~~~~~-~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~ 820 (824)
.|.++|.. +.+++.|++|.++| ++|+.||.++.++..|+.|..++
T Consensus 394 -rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 394 -RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred -ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC
Confidence 68888874 67899999999999 69999999888888888876654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=8.1e-15 Score=168.46 Aligned_cols=156 Identities=23% Similarity=0.236 Sum_probs=92.3
Q ss_pred ccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccc
Q 048180 448 VERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c 526 (824)
-..|++..+.+..+|. +. ++|+.|.+.+|. +..+|. .+++|++|+|++|.++.+|.. ..+|++|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 3455666666666655 22 356777777664 444553 246677777777777766643 346677777765
Q ss_pred cccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccccc
Q 048180 527 IYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLM 606 (824)
Q Consensus 527 ~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~ 606 (824)
.++.+|.+ ..+|+.|++++|+++.+|.. +++|+.|++++|.+..+|.. ..+|+.|++++|.+..+|.
T Consensus 273 -~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~~LP~--- 339 (788)
T PRK15387 273 -PLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLPT--- 339 (788)
T ss_pred -chhhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC----cccccccccccCccccccc---
Confidence 35555541 24566777777777777652 35677777777776666531 2346666677666544321
Q ss_pred chhhhhchHhhhcCCCccEEEEEecCccchhh
Q 048180 607 QEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKE 638 (824)
Q Consensus 607 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 638 (824)
+ ..+|+.|++++|.+..+|.
T Consensus 340 ----------l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 340 ----------L--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ----------c--ccccceEecCCCccCCCCC
Confidence 0 1356677777776665543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=4.6e-15 Score=170.48 Aligned_cols=258 Identities=20% Similarity=0.140 Sum_probs=181.7
Q ss_pred CCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccEEecc
Q 048180 468 CKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVS 547 (824)
Q Consensus 468 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~ 547 (824)
.+-..|+++++. +..+|+.+. .+|+.|++.+|.++.+|.. +++|++|++++| .++.+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL--PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc--ccccceeecc
Confidence 345678888885 567887653 4799999999999888863 578999999986 67778853 4688999999
Q ss_pred CCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEE
Q 048180 548 GSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFD 627 (824)
Q Consensus 548 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 627 (824)
+|.++.+|.. +.+|+.|++++|.+..+|. .+++|+.|++++|.+..++.. ..+|+.|.
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---------------p~~L~~L~ 328 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---------------PSELCKLW 328 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---------------cccccccc
Confidence 9998888863 3568889999999888865 247899999999886654321 13466777
Q ss_pred EEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceeeccccCCCC
Q 048180 628 FTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNL 707 (824)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L 707 (824)
+++|.+..+|... .+|+.|+++.+.+. .+|. .+++|+.|.+.++.- ..++ ...++|
T Consensus 329 Ls~N~L~~LP~lp-----~~Lq~LdLS~N~Ls-------------~LP~----lp~~L~~L~Ls~N~L-~~LP-~l~~~L 384 (788)
T PRK15387 329 AYNNQLTSLPTLP-----SGLQELSVSDNQLA-------------SLPT----LPSELYKLWAYNNRL-TSLP-ALPSGL 384 (788)
T ss_pred cccCccccccccc-----cccceEecCCCccC-------------CCCC----CCcccceehhhcccc-ccCc-cccccc
Confidence 8888887766432 46777777655431 1221 246778887776542 2221 113578
Q ss_pred CEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCC
Q 048180 708 KFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCD 787 (824)
Q Consensus 708 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lp 787 (824)
+.|+++++ .+..+|. ..++|+.|+++++ .++.+|. .+.+|+.|+++++ .+..+|..+..++
T Consensus 385 ~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N-~LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~ 445 (788)
T PRK15387 385 KELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLS 445 (788)
T ss_pred ceEEecCC-cccCCCC-----cccCCCEEEccCC-cCCCCCc-----------chhhhhhhhhccC-cccccChHHhhcc
Confidence 88888874 5666643 2467888888887 4555542 2356888888887 5778888888888
Q ss_pred CccEEEecCCCCcC
Q 048180 788 FVQTIGIWSCCKLE 801 (824)
Q Consensus 788 sL~~L~i~~C~~L~ 801 (824)
+|+.|++++++ |.
T Consensus 446 ~L~~LdLs~N~-Ls 458 (788)
T PRK15387 446 SETTVNLEGNP-LS 458 (788)
T ss_pred CCCeEECCCCC-CC
Confidence 88899888864 44
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-16 Score=142.69 Aligned_cols=167 Identities=27% Similarity=0.335 Sum_probs=144.5
Q ss_pred CcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCC-Ccc
Q 048180 458 LRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLA 536 (824)
Q Consensus 458 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~ 536 (824)
+.+++.+..+++++.|.++.|. +..+|+.+ ..+++|++|++++|.++++|.+|+.++.||.|++.- +.+..+| .+|
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNK-l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNK-LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCc-eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccC
Confidence 4455667778888999999986 67778775 789999999999999999999999999999999987 4677788 599
Q ss_pred cCCCccEEeccCCCCc--ccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhch
Q 048180 537 ELVELMVLDVSGSGIA--EFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFI 614 (824)
Q Consensus 537 ~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 614 (824)
.++-|+.||+.++++. .+|..+..|+.|+-|+++.|.+.-+|+. +++|++||.|.+..|.+.. .+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~------------lp 166 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLS------------LP 166 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhh------------Cc
Confidence 9999999999999876 7999999999999999999998888877 8999999999999886544 46
Q ss_pred HhhhcCCCccEEEEEecCccchhhhh
Q 048180 615 EDVRKLRNLNVFDFTFVSLQSFKEYI 640 (824)
Q Consensus 615 ~~l~~L~~L~~L~l~~~~~~~~~~~~ 640 (824)
.+++.|+.|+.|.+.+|.+.-+|+.+
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhh
Confidence 78899999999999999888777665
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=2.3e-14 Score=168.45 Aligned_cols=321 Identities=24% Similarity=0.304 Sum_probs=227.3
Q ss_pred CcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC--Ccccccc-ccCcccccEEecccccccccCCC
Q 048180 458 LRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS--MGILPKS-LSSLKYLTVLLLQNCIYLTCLPS 534 (824)
Q Consensus 458 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--~~~lp~~-i~~l~~L~~L~L~~c~~~~~lp~ 534 (824)
....|........|.+.+.+|. ...++.. ..++.|+.|-+.++. +..++.. +..+++|++|||++|..+..+|+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~-~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNK-IEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred ccccccccchhheeEEEEeccc-hhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 3345566677788888888875 4444443 356689999999986 6666654 67899999999999999999995
Q ss_pred -cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhc
Q 048180 535 -LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAF 613 (824)
Q Consensus 535 -i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 613 (824)
|++|.+|++|+++++.+..+|.++++|++|.+|++..+.....+++.+..|++|++|.+.... .......
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~---------~~~~~~~ 660 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA---------LSNDKLL 660 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc---------cccchhh
Confidence 999999999999999999999999999999999999887655556767789999999988643 0122345
Q ss_pred hHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeeccc
Q 048180 614 IEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHC 693 (824)
Q Consensus 614 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 693 (824)
..++..|++|+.+.+...+..-...+.. ..+|.++.......+ ... .........+.+|+.|.+.+|
T Consensus 661 l~el~~Le~L~~ls~~~~s~~~~e~l~~---~~~L~~~~~~l~~~~-~~~---------~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSVLLLEDLLG---MTRLRSLLQSLSIEG-CSK---------RTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred HHhhhcccchhhheeecchhHhHhhhhh---hHHHHHHhHhhhhcc-ccc---------ceeecccccccCcceEEEEcC
Confidence 6778888888888886554411111111 111211111000000 000 001112345789999999999
Q ss_pred ccceee--c-----ccc-CCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccC--CCCCCCccccc
Q 048180 694 NAVTQM--T-----IPN-LQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDD--DENSNPQVCWR 763 (824)
Q Consensus 694 ~~~~~~--~-----l~~-l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~--~~~~~~~~~~p 763 (824)
...+.. + ... |++|.++.+.+|.....+.+ ....|+|+.|.+..|+.++++..... .........|+
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence 976533 1 222 66888888888888877643 44589999999999999988764322 11111245677
Q ss_pred ccCeE-eccCCcchhccccCcccCCCccEEEecCCCCcCCCCcc
Q 048180 764 SLRKL-ILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPIS 806 (824)
Q Consensus 764 ~L~~L-~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~ 806 (824)
+++.+ .+.+.+.+.++...--.+++|+.+.+..||++.++|..
T Consensus 805 ~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 805 KLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ccccceeeecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence 88888 57887777777666566778999999999999999974
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.5e-13 Score=157.43 Aligned_cols=160 Identities=22% Similarity=0.342 Sum_probs=99.0
Q ss_pred CccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEeccc
Q 048180 447 DVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 525 (824)
+...+.+.++++..+|. +. ++|+.|++++|. +..+|..++ .+|+.|++++|.+..+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 44566777766666665 32 467777777774 556666542 467777777777777776543 3677777777
Q ss_pred ccccccCCC-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 526 CIYLTCLPS-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 526 c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
|. +..+|. +. .+|++|++++|+++.+|..+. .+|++|++++|.+..+|.. +. ++|+.|++++|.+..+|..
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-LP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-ch--hhHHHHHhcCCccccCCcc
Confidence 53 556663 43 467777777777777776553 4677777777777666543 21 3566777777665443311
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
+ .++|+.|+++.|.+..+
T Consensus 323 ------------l--~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 323 ------------L--PPGLKTLEAGENALTSL 340 (754)
T ss_pred ------------c--cccceeccccCCccccC
Confidence 1 13566666666655443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=1e-12 Score=152.34 Aligned_cols=189 Identities=21% Similarity=0.244 Sum_probs=142.9
Q ss_pred CcccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccc
Q 048180 433 GRRLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSL 512 (824)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i 512 (824)
+..+..+|. ..+..++.|.+.+|++..+|... .++|++|++++|. +..+|..+ ..+|+.|+|++|.+..+|..+
T Consensus 187 ~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l 260 (754)
T PRK15370 187 ILGLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRITELPERL 260 (754)
T ss_pred CCCcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc-cccCChhh---hccccEEECcCCccCcCChhH
Confidence 334555554 34568999999999999888622 3689999999996 56788754 357999999999999999877
Q ss_pred cCcccccEEecccccccccCCC-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEE
Q 048180 513 SSLKYLTVLLLQNCIYLTCLPS-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEF 591 (824)
Q Consensus 513 ~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L 591 (824)
. .+|++|++++| .++.+|. +. .+|++|++++|+++.+|..+. .+|++|++++|.+..+|.. + .++|+.|
T Consensus 261 ~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L 330 (754)
T PRK15370 261 P--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET-L--PPGLKTL 330 (754)
T ss_pred h--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc-c--cccceec
Confidence 5 58999999975 6778884 54 589999999999999987653 4799999999999888754 2 3689999
Q ss_pred EeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEe
Q 048180 592 SMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSV 655 (824)
Q Consensus 592 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 655 (824)
++.+|.+..+|.. + .++|+.|++++|.+..+|..+ ...|+.|.++.
T Consensus 331 ~Ls~N~Lt~LP~~------------l--~~sL~~L~Ls~N~L~~LP~~l----p~~L~~LdLs~ 376 (754)
T PRK15370 331 EAGENALTSLPAS------------L--PPELQVLDVSKNQITVLPETL----PPTITTLDVSR 376 (754)
T ss_pred cccCCccccCChh------------h--cCcccEEECCCCCCCcCChhh----cCCcCEEECCC
Confidence 9999987665422 2 268999999988877655433 13455554443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.3e-14 Score=130.08 Aligned_cols=156 Identities=26% Similarity=0.389 Sum_probs=133.4
Q ss_pred cCCCccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEe
Q 048180 444 WSGDVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLL 522 (824)
Q Consensus 444 ~~~~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 522 (824)
..+.+.++.+++|++..+|. +.++.+|++|++++|+ +..+|.++ +.+++||.|++.-|.+..+|..++.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34678889999999888876 8889999999999887 77888874 889999999999888889999999999999999
Q ss_pred cccccc-cccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccc
Q 048180 523 LQNCIY-LTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 523 L~~c~~-~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 600 (824)
|.+|+. -..+| .+-.+.-|+.|.++.+.++.+|..+++|++|+.|.+..|.+.++|.. ++.|+.|++|++.+|.+.-
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeee
Confidence 987643 34677 48888888999999999999999999999999999999988888876 8999999999999987665
Q ss_pred cc
Q 048180 601 LP 602 (824)
Q Consensus 601 ~~ 602 (824)
+|
T Consensus 188 lp 189 (264)
T KOG0617|consen 188 LP 189 (264)
T ss_pred cC
Confidence 54
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=1.5e-10 Score=142.74 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=167.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC-cCCHHHHHHHHHHhcccccCCC-cc--------h
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY-EDDLKELQIKIARKIDFVLSSD-ES--------V 167 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~--------~ 167 (824)
...+++.|+|++|.||||++.+.... ++.++|+++.. +.++..+...++..++...... .. .
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~--------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~ 101 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAG--------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQ 101 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHh--------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCC
Confidence 35689999999999999999998742 33689999964 4566777777777774211110 00 0
Q ss_pred hhhHHHHHHHHHHHH-c-CCeEEEEEeCCCcccc---cchhc--CCCCCCCcEEEEEcCChhhhh--cc-ccccccccC-
Q 048180 168 RDNAILLENALQTLL-E-TGKILLILDNMRKAFS---LEEIG--IPTLSNSLRIIITSPSSSLCR--QM-KCRERFALN- 236 (824)
Q Consensus 168 ~~~~~~l~~~l~~~l-~-~kr~LlVlDdv~~~~~---~~~l~--~~~~~~gs~IivTTr~~~v~~--~~-~~~~~~~l~- 236 (824)
......+...+-..+ . +.+++|||||+...++ .+.+. ......+.++|||||...-.. .. -.....++.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~ 181 (903)
T PRK04841 102 YASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGS 181 (903)
T ss_pred cCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCH
Confidence 011112222222222 2 6789999999976532 11221 222234458889999842211 11 112234455
Q ss_pred ---CCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccCch
Q 048180 237 ---LLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSSLK 313 (824)
Q Consensus 237 ---~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ 313 (824)
+|+.+|+.++|....+.. . -.+...+|.+.|+|.|+++..++..+. ...... ......+.. .
T Consensus 182 ~~l~f~~~e~~~ll~~~~~~~---~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~--~~~~~~--~~~~~~~~~----~- 246 (903)
T PRK04841 182 QQLAFDHQEAQQFFDQRLSSP---I---EAAESSRLCDDVEGWATALQLIALSAR--QNNSSL--HDSARRLAG----I- 246 (903)
T ss_pred HhCCCCHHHHHHHHHhccCCC---C---CHHHHHHHHHHhCChHHHHHHHHHHHh--hCCCch--hhhhHhhcC----C-
Confidence 899999999998765432 1 123467899999999999999887775 221100 000111100 0
Q ss_pred hhHHHHHhhhhh-hhhcccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhccccccccchHHHHhhHHHHHHHH
Q 048180 314 YIEEEVFRDLKL-GYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGEEMEGIDERFGKAKEILEEL 392 (824)
Q Consensus 314 ~~~~~i~~~l~~-sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~~L 392 (824)
....+...+.- -++.||+. .+..++..|+++ .++.+ + +..+... +.+...+++|
T Consensus 247 -~~~~~~~~l~~~v~~~l~~~------~~~~l~~~a~~~---~~~~~-l-----~~~l~~~---------~~~~~~L~~l 301 (903)
T PRK04841 247 -NASHLSDYLVEEVLDNVDLE------TRHFLLRCSVLR---SMNDA-L-----IVRVTGE---------ENGQMRLEEL 301 (903)
T ss_pred -CchhHHHHHHHHHHhcCCHH------HHHHHHHhcccc---cCCHH-H-----HHHHcCC---------CcHHHHHHHH
Confidence 01223333322 37799999 999999999987 23322 2 2222222 2356789999
Q ss_pred HhcCcccccccCcCCccccchHHHHHHHhhh
Q 048180 393 KDASFLVGIISDENEIVKMHPLMFDMASKME 423 (824)
Q Consensus 393 ~~~sll~~~~~~~~~~~~mhdl~~dl~~~i~ 423 (824)
.+.++++.....+...|+.|++++++.+...
T Consensus 302 ~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 302 ERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 9999972333344467999999999988654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=8.1e-13 Score=133.93 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=101.1
Q ss_pred cEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEecccccccccCCC--cccCCCccEEecc
Q 048180 471 TTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCIYLTCLPS--LAELVELMVLDVS 547 (824)
Q Consensus 471 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~~~~~lp~--i~~L~~L~~L~l~ 547 (824)
..+.+..|+ +..+|+..|+.+++||.|||++|.|+.+ |..+..+..|..|-+.+++.++.+|. +++|..|+.|.+.
T Consensus 70 veirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 445555554 6778888888888899999988888665 55788888888888877778899983 8999999999988
Q ss_pred CCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 548 GSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 548 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
-+++.-++. .+..|++|..|.+..|.+..++.+.+..+.+++++++..|.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 888885554 57889999999999998888888778888889888877664
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=3.4e-11 Score=129.45 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=70.8
Q ss_pred hhcCCCCCcEEEecCCCC-----ccccccccCcccccEEeccccccc------ccCC-CcccCCCccEEeccCCCCc-cc
Q 048180 488 FFNSFPNLKILNLSDTSM-----GILPKSLSSLKYLTVLLLQNCIYL------TCLP-SLAELVELMVLDVSGSGIA-EF 554 (824)
Q Consensus 488 ~~~~l~~Lr~L~L~~~~~-----~~lp~~i~~l~~L~~L~L~~c~~~------~~lp-~i~~L~~L~~L~l~~~~l~-~l 554 (824)
++..+..|++|+++++.+ ..++..+...++|++|+++++... ..++ .+.++++|+.|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 345556677777777765 234444555566666666654322 1122 2455666666666666554 23
Q ss_pred CcccccCCC---CcEEeccCccccccc----hhhhcCC-CCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEE
Q 048180 555 PDGMNHLTK---LLFLNLSRTRVRNFP----LHLVTSL-HNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVF 626 (824)
Q Consensus 555 p~~i~~L~~---L~~L~l~~~~~~~~~----~~~l~~L-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L 626 (824)
+..+..+.+ |++|++++|.+.... ...+..+ ++|+.|++++|.+..- ........+..+++|+.|
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-------SCEALAKALRANRDLKEL 170 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-------HHHHHHHHHHhCCCcCEE
Confidence 333333333 666666666553111 1123444 5666666666653321 111223344555566666
Q ss_pred EEEecCcc
Q 048180 627 DFTFVSLQ 634 (824)
Q Consensus 627 ~l~~~~~~ 634 (824)
+++.|.+.
T Consensus 171 ~l~~n~l~ 178 (319)
T cd00116 171 NLANNGIG 178 (319)
T ss_pred ECcCCCCc
Confidence 66655443
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=8.1e-09 Score=107.90 Aligned_cols=182 Identities=17% Similarity=0.158 Sum_probs=115.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
+..++.|+|++|+||||+++.+++.... ..+ ..+|+. ....+..+++..|+..++..... .........+.+.+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~---~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ---ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC---CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 3468999999999999999999987642 111 223433 33457788999999888764322 22222334444444
Q ss_pred HHHH-cCCeEEEEEeCCCccc--ccchhcC--CC-CCCCc--EEEEEcCChhhhhccc----------cccccccCCCCh
Q 048180 179 QTLL-ETGKILLILDNMRKAF--SLEEIGI--PT-LSNSL--RIIITSPSSSLCRQMK----------CRERFALNLLTD 240 (824)
Q Consensus 179 ~~~l-~~kr~LlVlDdv~~~~--~~~~l~~--~~-~~~gs--~IivTTr~~~v~~~~~----------~~~~~~l~~L~~ 240 (824)
.... .+++++||+||+|... .++.++. .. ...+. .|++|.... ....+. ....+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 3333 5788999999998764 3444421 11 11222 445555432 221111 123578999999
Q ss_pred HHHHHHHHHHhcCcCCCCc-hhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 048180 241 EEAYLLLINEVGLAGKVLE-GEIEFGLKNIAKKCGGLPLAIITFAKHH 287 (824)
Q Consensus 241 ~~~~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~GlPlai~~~g~~l 287 (824)
+|..+++...+...+.... .--.+..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998877653331111 2234778899999999999999999876
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=1.4e-11 Score=130.63 Aligned_cols=197 Identities=30% Similarity=0.392 Sum_probs=125.9
Q ss_pred eecCCcccceeecccc---CCCccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC
Q 048180 429 FFKPGRRLRKFVYEDW---SGDVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS 504 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~---~~~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 504 (824)
....+..++.+|.... ..+....+++.|++.++|. +..|-.|..+.+..|. +..+|.. .+++..|.+|+|+.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~-i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEA-ICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchh-hhhhhHHHHhhhccch
Confidence 4445555666655421 2234556667777777765 5555566666666663 5556655 3667777777777777
Q ss_pred CccccccccCcccccEEecccccccccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhc
Q 048180 505 MGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVT 583 (824)
Q Consensus 505 ~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~ 583 (824)
+..+|..++.|+ |+.|-+++ +.++.+| .++.+..|..||.+.|.+..+|..++.|.+|+.|++..|.+..+|++ +.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LC 209 (722)
T ss_pred hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-Hh
Confidence 777777666665 67777766 3566666 47777777777777777777777777777777777777777777665 44
Q ss_pred CCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhh
Q 048180 584 SLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQ 643 (824)
Q Consensus 584 ~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 643 (824)
.|+ |..|+++.|++..+ +-.+.+|++|++|-+.+|.+.+-|..++..
T Consensus 210 ~Lp-Li~lDfScNkis~i------------Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 210 SLP-LIRLDFSCNKISYL------------PVDFRKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred CCc-eeeeecccCceeec------------chhhhhhhhheeeeeccCCCCCChHHHHhc
Confidence 443 66777777665443 334666777777777777777666655443
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=1.6e-10 Score=124.15 Aligned_cols=163 Identities=25% Similarity=0.258 Sum_probs=103.1
Q ss_pred ccCCCCccEEEcCCCCCcc----cCChhhhcCCCCCcEEEecCCCCcc-------ccccccCcccccEEecccccccccC
Q 048180 464 CPMFCKLTTLFLQGNPLDL----QLDNDFFNSFPNLKILNLSDTSMGI-------LPKSLSSLKYLTVLLLQNCIYLTCL 532 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~~l~~Lr~L~L~~~~~~~-------lp~~i~~l~~L~~L~L~~c~~~~~l 532 (824)
+..+.+|+.|.+.++.... .++. .+...+.|+.|+++++.+.. ++..+..+.+|++|++++|......
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 4455567888888775321 1222 24566778888888876542 2345566778888888887654444
Q ss_pred C-CcccCCC---ccEEeccCCCCc-----ccCcccccC-CCCcEEeccCcccccc----chhhhcCCCCCcEEEeecCcc
Q 048180 533 P-SLAELVE---LMVLDVSGSGIA-----EFPDGMNHL-TKLLFLNLSRTRVRNF----PLHLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 533 p-~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~~~~----~~~~l~~L~~L~~L~l~~~~l 598 (824)
+ .+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.+... -...+..+++|++|++.+|.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 4 2444444 888888888765 233345566 7888888888877521 122356777888888888764
Q ss_pred ccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 599 LCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
..- ........+..+++|+.|++++|.+.
T Consensus 178 ~~~-------~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 178 GDA-------GIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred chH-------HHHHHHHHHHhCCCCCEEeccCCccC
Confidence 421 11223445666678888888877654
No 28
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=3.5e-09 Score=101.73 Aligned_cols=142 Identities=20% Similarity=0.303 Sum_probs=88.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccc--cceEEEEEeCCcCCHH---HHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSH--FNTFIWVEASYEDDLK---ELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~--F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
|++.|+|.+|+||||+++.++++........ +...+|+...+..... .+...|..+...... ... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~---~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIE---ELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhH---HHHH
Confidence 5899999999999999999999876631111 4566777665554432 333344333321111 001 1111
Q ss_pred HHHHHHHcCCeEEEEEeCCCcccc---------cch-hc--CCC-CCCCcEEEEEcCChhh---hhccccccccccCCCC
Q 048180 176 NALQTLLETGKILLILDNMRKAFS---------LEE-IG--IPT-LSNSLRIIITSPSSSL---CRQMKCRERFALNLLT 239 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv~~~~~---------~~~-l~--~~~-~~~gs~IivTTr~~~v---~~~~~~~~~~~l~~L~ 239 (824)
..+ -+.+++++|+|++++... +.. +. ++. ...+.+|+||+|.... .+.......+++.+++
T Consensus 75 ~~~---~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 75 ELL---EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHH---HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 111 147899999999976643 111 10 121 2357799999999766 3334444689999999
Q ss_pred hHHHHHHHHHHh
Q 048180 240 DEEAYLLLINEV 251 (824)
Q Consensus 240 ~~~~~~Lf~~~~ 251 (824)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.96 E-value=3.1e-07 Score=101.69 Aligned_cols=298 Identities=14% Similarity=0.110 Sum_probs=159.9
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
....+++..++++.....+.. .......+.|+|++|+|||++++.++++.... ...-..++|......+...++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~---~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~--~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL---RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI--AVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh---CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEECCcCCCHHHHHH
Confidence 344455555555444332110 12234557899999999999999999987653 2123456777777778889999
Q ss_pred HHHHhcccccCCCcchhhhHHHHHHHHHHHHc--CCeEEEEEeCCCccc---c---cchh-cCCCCCCCc--EEEEEcCC
Q 048180 152 KIARKIDFVLSSDESVRDNAILLENALQTLLE--TGKILLILDNMRKAF---S---LEEI-GIPTLSNSL--RIIITSPS 220 (824)
Q Consensus 152 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~---~---~~~l-~~~~~~~gs--~IivTTr~ 220 (824)
+|+.++....... .......+.+.+.+.++ ++..+||||+++... . +..+ .......++ .||.++..
T Consensus 105 ~i~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 105 EIARQLFGHPPPS--SGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHhcCCCCCC--CCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 9999886421111 11112334444444443 456899999998753 1 2222 111111233 35555555
Q ss_pred hhhhhccc-------cccccccCCCChHHHHHHHHHHhcC---cCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHH--h
Q 048180 221 SSLCRQMK-------CRERFALNLLTDEEAYLLLINEVGL---AGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHH--L 288 (824)
Q Consensus 221 ~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l--~ 288 (824)
..+..... ....+.+.+++.++..+++..++.. .....++.++.+++......|..+.|+.++-... +
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 43322211 1235789999999999999887632 2221233344444444444566788877764432 2
Q ss_pred hhcC---CChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhh-ccCC-CcccchHHHHH
Q 048180 289 KFIG---FDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCA-MYPR-NHAFVAEELMK 363 (824)
Q Consensus 289 ~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s-~fp~-~~~i~~~~li~ 363 (824)
...+ -+.++...+.+... .....-.+..||.+ .|..+..++ .... ...+...++..
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~------~k~~L~ai~~~~~~~~~~~~~~~i~~ 323 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLH------EKLLLRAIVRLLKKGGDEVTTGEVYE 323 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHH------HHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 1111 24556655555431 11223357788886 444443333 2221 13355555543
Q ss_pred H--HHHhccccccccchHHHHhhHHHHHHHHHhcCccccc
Q 048180 364 D--WMTEGLLGEEMEGIDERFGKAKEILEELKDASFLVGI 401 (824)
Q Consensus 364 ~--Wiaeg~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 401 (824)
. .+++.+-.. .- .......|+.+|...+++ +.
T Consensus 324 ~y~~l~~~~~~~-~~----~~~~~~~~l~~L~~~glI-~~ 357 (394)
T PRK00411 324 EYKELCEELGYE-PR----THTRFYEYINKLDMLGII-NT 357 (394)
T ss_pred HHHHHHHHcCCC-cC----cHHHHHHHHHHHHhcCCe-EE
Confidence 2 233222111 00 112346689999999999 65
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=9.7e-11 Score=119.08 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=62.2
Q ss_pred ecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecC-CCCc
Q 048180 430 FKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSD-TSMG 506 (824)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~ 506 (824)
...+..+.++|. +.+.....+.+..|.++.+|. |..+++||.|+++.|. +..+.+..|.+++.|..|-+-+ |.|+
T Consensus 52 dCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 334556666776 566677778888888888876 7788888888888875 5555555667777666655544 6677
Q ss_pred cccc-cccCcccccEEeccc
Q 048180 507 ILPK-SLSSLKYLTVLLLQN 525 (824)
Q Consensus 507 ~lp~-~i~~l~~L~~L~L~~ 525 (824)
.+|. .++.|..|+-|.+.-
T Consensus 130 ~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred hhhhhHhhhHHHHHHHhcCh
Confidence 7765 345555555555443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2e-09 Score=101.94 Aligned_cols=130 Identities=28% Similarity=0.344 Sum_probs=48.6
Q ss_pred cCCCCCcEEEecCCCCcccccccc-CcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccc-cCCCCcEE
Q 048180 490 NSFPNLKILNLSDTSMGILPKSLS-SLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMN-HLTKLLFL 567 (824)
Q Consensus 490 ~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~-~L~~L~~L 567 (824)
.+...++.|+|+++.|..+. .++ .+.+|+.|+|++| .++.++.+..+++|++|++++|.|+.++..+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34556777888888776653 455 5777888888874 56777777778888888888888888866553 57888888
Q ss_pred eccCccccccch-hhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEE
Q 048180 568 NLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFT 629 (824)
Q Consensus 568 ~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 629 (824)
++++|.+.++.. ..+..+++|+.|++.+|++...+ ....--+..+++|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~--------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK--------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST--------THHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh--------hHHHHHHHHcChhheeCCE
Confidence 888888744422 33677888888888888644321 1234456677777777654
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.80 E-value=2.6e-06 Score=93.36 Aligned_cols=273 Identities=14% Similarity=0.099 Sum_probs=147.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhcccc---ceEEEEEeCCcCCHHHHHHHHHHhcc---cccCCCcchhhhHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHF---NTFIWVEASYEDDLKELQIKIARKID---FVLSSDESVRDNAI 172 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~ 172 (824)
....+.|+|++|+|||++++.+++..... .... -..+|+......+...++..|+.++. ....... ....
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~-~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~ 114 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEA-AEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTG---LSTS 114 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH-hhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCC---CCHH
Confidence 34578999999999999999999986532 1111 13577777777778889999999883 2211111 1112
Q ss_pred HHHHHHHHHH--cCCeEEEEEeCCCccc-c----cchh-cC--CCCCCCc--EEEEEcCChhhhhccc-------ccccc
Q 048180 173 LLENALQTLL--ETGKILLILDNMRKAF-S----LEEI-GI--PTLSNSL--RIIITSPSSSLCRQMK-------CRERF 233 (824)
Q Consensus 173 ~l~~~l~~~l--~~kr~LlVlDdv~~~~-~----~~~l-~~--~~~~~gs--~IivTTr~~~v~~~~~-------~~~~~ 233 (824)
.+.+.+.+.+ .+++++||||+++... . +..+ .. .....++ .+|++|........+. ....+
T Consensus 115 ~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i 194 (365)
T TIGR02928 115 EVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEI 194 (365)
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCccee
Confidence 2233333333 2567999999998762 1 1111 11 1111222 4455554332211110 12457
Q ss_pred ccCCCChHHHHHHHHHHhcC--cCCCCchhHHHHHHHHHHHhCCChHHH-HHHHH--HHhhhc---CCChHHHHHHHHHH
Q 048180 234 ALNLLTDEEAYLLLINEVGL--AGKVLEGEIEFGLKNIAKKCGGLPLAI-ITFAK--HHLKFI---GFDFISWKRALMSE 305 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPlai-~~~g~--~l~~~~---~~~~~~w~~~~~~~ 305 (824)
.+++.+.++..+++..++.. ......++..+...+++....|.|..+ ..+-. .++... .-+.++.+.+.+.+
T Consensus 195 ~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 195 IFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 89999999999999887631 111133343345556777777887443 33222 112111 13344444444432
Q ss_pred HhhccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhcc--CCCcccchHHHHHHHH--Hhcc-ccccccchHH
Q 048180 306 LDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMY--PRNHAFVAEELMKDWM--TEGL-LGEEMEGIDE 380 (824)
Q Consensus 306 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~f--p~~~~i~~~~li~~Wi--aeg~-i~~~~~~~~~ 380 (824)
. .....-++..||.+ .|..+..++.. .++..+...++...+- ++.+ +.+ .
T Consensus 275 ~-------------~~~~~~~i~~l~~~------~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~---- 329 (365)
T TIGR02928 275 E-------------KDRLLELIRGLPTH------SKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDP--L---- 329 (365)
T ss_pred H-------------HHHHHHHHHcCCHH------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCC--C----
Confidence 1 11223355678887 66555444321 1344466666655331 2211 112 1
Q ss_pred HHhhHHHHHHHHHhcCccccc
Q 048180 381 RFGKAKEILEELKDASFLVGI 401 (824)
Q Consensus 381 ~~~~~~~~~~~L~~~sll~~~ 401 (824)
.+.....++..|...+++ ..
T Consensus 330 ~~~~~~~~l~~l~~~gli-~~ 349 (365)
T TIGR02928 330 TQRRISDLLNELDMLGLV-EA 349 (365)
T ss_pred cHHHHHHHHHHHHhcCCe-EE
Confidence 134567889999999999 65
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.80 E-value=4.2e-07 Score=96.74 Aligned_cols=255 Identities=15% Similarity=0.096 Sum_probs=135.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-cchhhhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD-ESVRDNAILLENA 177 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~ 177 (824)
....+.++|++|+|||+||+.+++..... | ..+..+....... +...+..++...--- ++.+.......+.
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~----~---~~~~~~~~~~~~~-l~~~l~~~~~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN----L---KITSGPALEKPGD-LAAILTNLEEGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC----E---EEeccchhcCchh-HHHHHHhcccCCEEEEehHhhhCHHHHHH
Confidence 45567899999999999999999875431 1 1122111111222 222233332111000 0001011122344
Q ss_pred HHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhhhcc--ccccccccCCCChHHHHHHHHHHhcCcC
Q 048180 178 LQTLLETGKILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLCRQM--KCRERFALNLLTDEEAYLLLINEVGLAG 255 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 255 (824)
+...+.+.+..+|+|+..+...|... . .+..-|..||+...+.... .....+++++++.++..+++.+.+....
T Consensus 101 l~~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~ 176 (305)
T TIGR00635 101 LYPAMEDFRLDIVIGKGPSARSVRLD---L-PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN 176 (305)
T ss_pred hhHHHhhhheeeeeccCccccceeec---C-CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 55555677778888887666555332 1 1244566777765443321 1134678999999999999998876433
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhccccccc
Q 048180 256 KVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSS 335 (824)
Q Consensus 256 ~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 335 (824)
...+ .+....|++.|+|.|-.+..++..+. ..... ...... ....-......+...|..++.+
T Consensus 177 ~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~----------~~a~~-~~~~~i-t~~~v~~~l~~l~~~~~~l~~~-- 239 (305)
T TIGR00635 177 VEIE---PEAALEIARRSRGTPRIANRLLRRVR----------DFAQV-RGQKII-NRDIALKALEMLMIDELGLDEI-- 239 (305)
T ss_pred CCcC---HHHHHHHHHHhCCCcchHHHHHHHHH----------HHHHH-cCCCCc-CHHHHHHHHHHhCCCCCCCCHH--
Confidence 2122 34567899999999976655544322 11000 000000 1111122333356677888887
Q ss_pred CCcchhhhhh-hhhccCCCcccchHHHHHHHHHhccccccccchHHHHhhHHHHHH-HHHhcCccccc
Q 048180 336 YGCNTRECLL-YCAMYPRNHAFVAEELMKDWMTEGLLGEEMEGIDERFGKAKEILE-ELKDASFLVGI 401 (824)
Q Consensus 336 ~~~~~k~cfl-~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~-~L~~~sll~~~ 401 (824)
.+..+. .++.++.+ .+..+.+... +-.+ ...++..++ .|++++|+ +.
T Consensus 240 ----~~~~L~al~~~~~~~-~~~~~~ia~~-----lg~~--------~~~~~~~~e~~Li~~~li-~~ 288 (305)
T TIGR00635 240 ----DRKLLSVLIEQFQGG-PVGLKTLAAA-----LGED--------ADTIEDVYEPYLLQIGFL-QR 288 (305)
T ss_pred ----HHHHHHHHHHHhCCC-cccHHHHHHH-----hCCC--------cchHHHhhhHHHHHcCCc-cc
Confidence 666555 55666543 3444333221 1111 134566677 69999999 54
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=6e-09 Score=98.74 Aligned_cols=136 Identities=24% Similarity=0.268 Sum_probs=52.2
Q ss_pred CCCccccccccCcccccEEecccccccccCCCcc-cCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhh
Q 048180 503 TSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLA-ELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHL 581 (824)
Q Consensus 503 ~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~-~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~ 581 (824)
..|...|. +.+..+++.|+|++| .++.+..++ .+.+|+.|++++|.|+.++ ++..+++|+.|++++|.+.++....
T Consensus 7 ~~i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQ-YNNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccc-ccccccccccccccc-ccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 33445443 456668999999995 577777777 6899999999999999986 6889999999999999998886553
Q ss_pred hcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhh--hhhhcccceeE
Q 048180 582 VTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYI--SSQHWLWLQSY 651 (824)
Q Consensus 582 l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L 651 (824)
...+++|++|++.+|.+..+. .+..+..+++|+.|++.+|.+...+.+- -...+++|+.|
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~----------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLN----------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp HHH-TT--EEE-TTS---SCC----------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred HHhCCcCCEEECcCCcCCChH----------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 357999999999999876652 2457889999999999999887554332 12334555554
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.78 E-value=5.4e-07 Score=96.57 Aligned_cols=256 Identities=15% Similarity=0.109 Sum_probs=135.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLEN 176 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~ 176 (824)
.....+-|+|++|+||||+|+.+++..... + .++..+ ......-+..++..+....-- -+..+.......+
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~----~---~~~~~~-~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e 120 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVN----I---RITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEE 120 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCC----e---EEEecc-cccChHHHHHHHHhcccCCEEEEecHhhcchHHHH
Confidence 345678899999999999999999986432 1 112211 111122223333333211000 0000000111233
Q ss_pred HHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhhhccc--cccccccCCCChHHHHHHHHHHhcCc
Q 048180 177 ALQTLLETGKILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLCRQMK--CRERFALNLLTDEEAYLLLINEVGLA 254 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~ 254 (824)
.+...+.+.+..+|+|+..+...+... . .+.+-|..||+...+..... ....+++++++.++..+++.+.+...
T Consensus 121 ~l~~~~e~~~~~~~l~~~~~~~~~~~~-l---~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~ 196 (328)
T PRK00080 121 ILYPAMEDFRLDIMIGKGPAARSIRLD-L---PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL 196 (328)
T ss_pred HHHHHHHhcceeeeeccCccccceeec-C---CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 344445566777777776554433211 1 12345667777554433211 13468899999999999999887654
Q ss_pred CCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccc
Q 048180 255 GKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYS 334 (824)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 334 (824)
+... -.+....|++.|+|.|-.+..+...+. .|..+.. .... ....-......+...|..|++.
T Consensus 197 ~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~--------~~a~~~~---~~~I-~~~~v~~~l~~~~~~~~~l~~~- 260 (328)
T PRK00080 197 GVEI---DEEGALEIARRSRGTPRIANRLLRRVR--------DFAQVKG---DGVI-TKEIADKALDMLGVDELGLDEM- 260 (328)
T ss_pred CCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH--------HHHHHcC---CCCC-CHHHHHHHHHHhCCCcCCCCHH-
Confidence 3212 234678899999999965544444322 1221100 0001 1112233445566777788877
Q ss_pred cCCcchhhhhh-hhhccCCCcccchHHHHHHHHHhccccccccchHHHHhhHHHHHH-HHHhcCccccc
Q 048180 335 SYGCNTRECLL-YCAMYPRNHAFVAEELMKDWMTEGLLGEEMEGIDERFGKAKEILE-ELKDASFLVGI 401 (824)
Q Consensus 335 ~~~~~~k~cfl-~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~-~L~~~sll~~~ 401 (824)
.+..+. ....|+.+ .+..+.+... +-.+ .+.+++.++ .|++.+|+ +.
T Consensus 261 -----~~~~l~~~~~~~~~~-~~~~~~~a~~-----lg~~--------~~~~~~~~e~~Li~~~li-~~ 309 (328)
T PRK00080 261 -----DRKYLRTIIEKFGGG-PVGLDTLAAA-----LGEE--------RDTIEDVYEPYLIQQGFI-QR 309 (328)
T ss_pred -----HHHHHHHHHHHcCCC-ceeHHHHHHH-----HCCC--------cchHHHHhhHHHHHcCCc-cc
Confidence 666664 56677765 3444443222 1111 133444555 78888888 65
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.77 E-value=3.2e-07 Score=103.28 Aligned_cols=279 Identities=18% Similarity=0.186 Sum_probs=174.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhcccccCCCc-----------
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDFVLSSDE----------- 165 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~----------- 165 (824)
.+.|++-|..+.|-|||||+-+....... =..+.|.+.... .++.++...++..++.-.....
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~~~~~-----~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~ 109 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRELAAD-----GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQ 109 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHhcCc-----ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcc
Confidence 46799999999999999999998873322 346899988665 5678888888887763222111
Q ss_pred --chhhhHHHHHHHHHHHHcCCeEEEEEeCCCcccc--cc-hhc--CCCCCCCcEEEEEcCChhhhhcc---cccccccc
Q 048180 166 --SVRDNAILLENALQTLLETGKILLILDNMRKAFS--LE-EIG--IPTLSNSLRIIITSPSSSLCRQM---KCRERFAL 235 (824)
Q Consensus 166 --~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--~~-~l~--~~~~~~gs~IivTTr~~~v~~~~---~~~~~~~l 235 (824)
+.......+...+..+ .++..+||||..-..+ .. .+. +.....+-..|||||+..-...- -.....++
T Consensus 110 ~~~l~~l~~~L~~Ela~~--~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi 187 (894)
T COG2909 110 YVSLESLLSSLLNELASY--EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEI 187 (894)
T ss_pred cccHHHHHHHHHHHHHhh--cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhc
Confidence 1111223333333322 4678999999754322 11 121 22223445899999986443211 11223333
Q ss_pred ----CCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccC
Q 048180 236 ----NLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSS 311 (824)
Q Consensus 236 ----~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~ 311 (824)
=.++.+|+-++|.......- -+.-.+.+.+..+|-+-|+..++=.++ .+.+.+.--..++..
T Consensus 188 ~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~--~~~~~~q~~~~LsG~------ 253 (894)
T COG2909 188 GSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALR--NNTSAEQSLRGLSGA------ 253 (894)
T ss_pred ChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHcc--CCCcHHHHhhhccch------
Confidence 34788999999887653221 123357788999999999988887666 334433322222211
Q ss_pred chhhHHHHHh-hhhhhhhcccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhccccccccchHHHHhhHHHHHH
Q 048180 312 LKYIEEEVFR-DLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGEEMEGIDERFGKAKEILE 390 (824)
Q Consensus 312 ~~~~~~~i~~-~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~ 390 (824)
.+-+.+ ...--++.||++ +|..++-+|+++. + -+.|+..- +.++.|...++
T Consensus 254 ----~~~l~dYL~eeVld~Lp~~------l~~FLl~~svl~~---f-~~eL~~~L--------------tg~~ng~amLe 305 (894)
T COG2909 254 ----ASHLSDYLVEEVLDRLPPE------LRDFLLQTSVLSR---F-NDELCNAL--------------TGEENGQAMLE 305 (894)
T ss_pred ----HHHHHHHHHHHHHhcCCHH------HHHHHHHHHhHHH---h-hHHHHHHH--------------hcCCcHHHHHH
Confidence 011111 112236789999 9999999999874 1 23333322 22355778899
Q ss_pred HHHhcCcccccccCcCCccccchHHHHHHHhhhcc
Q 048180 391 ELKDASFLVGIISDENEIVKMHPLMFDMASKMEKK 425 (824)
Q Consensus 391 ~L~~~sll~~~~~~~~~~~~mhdl~~dl~~~i~~~ 425 (824)
+|.+++++.++.++....|+.|.+..||-+.-...
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 99999999677777789999999999998765544
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.76 E-value=3.8e-08 Score=99.32 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=90.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+.+.++|++|+|||+||+++++....+ ...+.|+.+.... .... .+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~y~~~~~~~---~~~~---------------------~~~~~~-- 89 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN----QRTAIYIPLSKSQ---YFSP---------------------AVLENL-- 89 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc----CCCeEEeeHHHhh---hhhH---------------------HHHhhc--
Confidence 678999999999999999999987542 2345666653110 0000 111111
Q ss_pred HHcCCeEEEEEeCCCcc---cccchhcCC----CCCCCcEEEEE-cCC---------hhhhhccccccccccCCCChHHH
Q 048180 181 LLETGKILLILDNMRKA---FSLEEIGIP----TLSNSLRIIIT-SPS---------SSLCRQMKCRERFALNLLTDEEA 243 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~---~~~~~l~~~----~~~~gs~IivT-Tr~---------~~v~~~~~~~~~~~l~~L~~~~~ 243 (824)
.+.-+||+||+|.. .+|+...+. ....|+.|||+ ++. ..+++.+.....++++++++++.
T Consensus 90 ---~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 90 ---EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred ---ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 23358999999874 345432111 12245556554 443 35666666667899999999999
Q ss_pred HHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHH
Q 048180 244 YLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAII 281 (824)
Q Consensus 244 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 281 (824)
++++.+.++..+-..+ +++..-|++.+.|-.-++.
T Consensus 167 ~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 167 IIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHH
Confidence 9999998875432122 2445667777776654443
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=3.2e-10 Score=120.53 Aligned_cols=153 Identities=24% Similarity=0.321 Sum_probs=127.8
Q ss_pred CCccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 446 GDVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
..+..+.+..|.+..+|. +..+..|+.|+++.|+ +..+|..+ ..--|++|-+++|+++.+|..|+.+.+|..|+.+
T Consensus 98 ~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~l--C~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 98 VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGL--CDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhh--hcCcceeEEEecCccccCCcccccchhHHHhhhh
Confidence 345566677777777776 7788889999999986 66777764 3445899999999999999999999999999999
Q ss_pred cccccccCCC-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccc
Q 048180 525 NCIYLTCLPS-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPR 603 (824)
Q Consensus 525 ~c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~ 603 (824)
.| .+..+|+ ++.|.+|+.|.++.|++..+|..++.| .|..|+++.|++..+|-. |.+|+.||+|-+.+|.+..-|.
T Consensus 175 ~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 175 KN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCChH
Confidence 86 5666774 999999999999999999999999855 599999999999999876 8999999999999998877544
Q ss_pred c
Q 048180 604 S 604 (824)
Q Consensus 604 ~ 604 (824)
.
T Consensus 252 q 252 (722)
T KOG0532|consen 252 Q 252 (722)
T ss_pred H
Confidence 3
No 39
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.73 E-value=7.8e-08 Score=98.11 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHH--
Q 048180 76 RICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKI-- 153 (824)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i-- 153 (824)
|+++.++.+.+... .+....+.|+|+.|+|||+|++.+.+.... ..+ ..+|+...+..... ....+
T Consensus 3 gR~~el~~l~~~l~-------~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~---~~~-~~~y~~~~~~~~~~-~~~~~~~ 70 (234)
T PF01637_consen 3 GREKELEKLKELLE-------SGPSQHILLYGPRGSGKTSLLKEFINELKE---KGY-KVVYIDFLEESNES-SLRSFIE 70 (234)
T ss_dssp S-HHHHHHHHHCHH-------H--SSEEEEEESTTSSHHHHHHHHHHHCT-----EE-CCCHHCCTTBSHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHH-------hhcCcEEEEEcCCcCCHHHHHHHHHHHhhh---cCC-cEEEEecccchhhh-HHHHHHH
Confidence 44555555555442 234578999999999999999999997633 112 34444443433222 22222
Q ss_pred --------HHhcccccC----------CCcchhhhHHHHHHHHHHHHcCCeEEEEEeCCCccc-ccc---h----h---c
Q 048180 154 --------ARKIDFVLS----------SDESVRDNAILLENALQTLLETGKILLILDNMRKAF-SLE---E----I---G 204 (824)
Q Consensus 154 --------~~~l~~~~~----------~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-~~~---~----l---~ 204 (824)
...+..... ...........+.+.+.. .+++++||+||+.... ... . + .
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~ 148 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLL 148 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHH
Confidence 111211111 011122233334343331 2456999999997666 111 1 1 0
Q ss_pred -CCCCCCCcEEEEEcCChhhhhc--------cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCC
Q 048180 205 -IPTLSNSLRIIITSPSSSLCRQ--------MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGG 275 (824)
Q Consensus 205 -~~~~~~gs~IivTTr~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 275 (824)
.......-.+|+++....+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||
T Consensus 149 ~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 149 DSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp HH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT
T ss_pred hhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCC
Confidence 1111223345555555444432 1223358999999999999998865433 111 1223456899999999
Q ss_pred ChHHHHH
Q 048180 276 LPLAIIT 282 (824)
Q Consensus 276 lPlai~~ 282 (824)
.|..|.-
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9987753
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.7e-09 Score=109.29 Aligned_cols=180 Identities=22% Similarity=0.222 Sum_probs=128.5
Q ss_pred CCCccEEEeccCCCcCCCC----ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcc--ccccccCcccc
Q 048180 445 SGDVERVSLMGNNLRELRT----CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGI--LPKSLSSLKYL 518 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L 518 (824)
...++.|+++.|-+..+.. ...+|+|+.|+++.|..........-..+++|+.|.|+.|++.. +-.....+++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 3578888888886555433 56788999999998865433333333467889999999998742 22234567889
Q ss_pred cEEecccccccccCC-CcccCCCccEEeccCCCCcccC--cccccCCCCcEEeccCcccccc--chh----hhcCCCCCc
Q 048180 519 TVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEFP--DGMNHLTKLLFLNLSRTRVRNF--PLH----LVTSLHNLQ 589 (824)
Q Consensus 519 ~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~--~~~----~l~~L~~L~ 589 (824)
..|+|..|..+..-. +...++.|++|||++|++..++ ..++.++.|+.|+++.|.+.++ |+. ....+++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 999998875333333 4667888999999999888777 4588999999999999988444 331 125678999
Q ss_pred EEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 590 EFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 590 ~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
.|++..|++.+|++ +..+..+.+|+.|.+..+.+.
T Consensus 305 ~L~i~~N~I~~w~s----------l~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 305 YLNISENNIRDWRS----------LNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeecccCccccccc----------cchhhccchhhhhhccccccc
Confidence 99999999877753 345666777777776665543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=3.7e-09 Score=103.67 Aligned_cols=131 Identities=22% Similarity=0.269 Sum_probs=78.1
Q ss_pred CCCcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCc
Q 048180 493 PNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRT 572 (824)
Q Consensus 493 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 572 (824)
..|..||||+|.|+.+-+++.-++.+|.|+++.| .+..+.++..|++|+.||+++|.+.++-..-.+|-+.+.|.+.+|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 4466666666666666666666666666666663 445555566666666666666666655444445666666666666
Q ss_pred cccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 573 RVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 573 ~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
.+.++. + +++|-+|..|++.+|.+... .....+++|+.|+.+.+.+|.+...
T Consensus 363 ~iE~LS-G-L~KLYSLvnLDl~~N~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 363 KIETLS-G-LRKLYSLVNLDLSSNQIEEL----------DEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hHhhhh-h-hHhhhhheeccccccchhhH----------HHhcccccccHHHHHhhcCCCcccc
Confidence 665552 2 56666666666666654332 2234566666666666666655543
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.4e-09 Score=108.75 Aligned_cols=214 Identities=18% Similarity=0.110 Sum_probs=134.0
Q ss_pred ccCCCccEEeccCCCCcccCc--ccccCCCCcEEeccCccccccc--hhhhcCCCCCcEEEeecCccccccccccchhhh
Q 048180 536 AELVELMVLDVSGSGIAEFPD--GMNHLTKLLFLNLSRTRVRNFP--LHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYA 611 (824)
Q Consensus 536 ~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~--~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~ 611 (824)
.++++|+...|.++.+...+. ....|++++.|++++|-+..+. ......|++|+.|+++.|.+....+..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~------ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN------ 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc------
Confidence 568889999999988887774 5678889999999988774442 244678899999999988765532221
Q ss_pred hchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeec
Q 048180 612 AFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLV 691 (824)
Q Consensus 612 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~ 691 (824)
. -..+++|+.|.++.|+++. .+... .....|+|+.|.+.
T Consensus 192 --~--~~~l~~lK~L~l~~CGls~-k~V~~------------------------------------~~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 192 --T--TLLLSHLKQLVLNSCGLSW-KDVQW------------------------------------ILLTFPSLEVLYLE 230 (505)
T ss_pred --c--hhhhhhhheEEeccCCCCH-HHHHH------------------------------------HHHhCCcHHHhhhh
Confidence 0 1156777778888777652 11110 00124566666666
Q ss_pred ccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEe
Q 048180 692 HCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLI 769 (824)
Q Consensus 692 ~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~ 769 (824)
++.+...- +...+.-|+.|+|++. ++.+.+.....+.||.|..|.++.| .+.++..-+. +.......||+|++|.
T Consensus 231 ~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~-~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 231 ANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDV-ESLDKTHTFPKLEYLN 307 (505)
T ss_pred cccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhhhcccc-CcchhcCCCc-cchhhhcccccceeee
Confidence 66422211 2333566777788773 4444444445677888888888876 5555542221 1112345789999999
Q ss_pred ccCCcchhcccc--CcccCCCccEEEecCCCCcC
Q 048180 770 LSNLPELRFMYS--GEAQCDFVQTIGIWSCCKLE 801 (824)
Q Consensus 770 l~~~~~L~~~~~--~~~~lpsL~~L~i~~C~~L~ 801 (824)
+..+ ++.+|+. .+..+++|+.|.+. |+.+.
T Consensus 308 i~~N-~I~~w~sl~~l~~l~nlk~l~~~-~n~ln 339 (505)
T KOG3207|consen 308 ISEN-NIRDWRSLNHLRTLENLKHLRIT-LNYLN 339 (505)
T ss_pred cccC-ccccccccchhhccchhhhhhcc-ccccc
Confidence 9887 4555643 35567788888764 34443
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.64 E-value=7.5e-07 Score=92.22 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=96.7
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
...+.-.-.||++|+||||||+.+....... |..++...+-.+=+++|++..
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~---------f~~~sAv~~gvkdlr~i~e~a------------------- 96 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAA---------FEALSAVTSGVKDLREIIEEA------------------- 96 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCc---------eEEeccccccHHHHHHHHHHH-------------------
Confidence 3456666799999999999999999875432 334444333333333333321
Q ss_pred HHHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCcEEEE--EcCChhh---hhccccccccccCCCChHHHHHHHHH
Q 048180 177 ALQTLLETGKILLILDNMRKAF--SLEEIGIPTLSNSLRIII--TSPSSSL---CRQMKCRERFALNLLTDEEAYLLLIN 249 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~gs~Iiv--TTr~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~~ 249 (824)
-+....|+|.+|.+|.|+.-. +-+.+ +|.-.+|.-|+| ||-+..- ........+|++++|+.+|-.+++.+
T Consensus 97 -~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 97 -RKNRLLGRRTILFLDEIHRFNKAQQDAL-LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred -HHHHhcCCceEEEEehhhhcChhhhhhh-hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 122224899999999998653 44444 788889998887 6655432 12223456999999999999999988
Q ss_pred HhcCcCCCCc---hhH-HHHHHHHHHHhCCChHHH
Q 048180 250 EVGLAGKVLE---GEI-EFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 250 ~~~~~~~~~~---~~~-~~~~~~i~~~c~GlPlai 280 (824)
.+-....... ..+ ++.-.-++..++|--.++
T Consensus 175 a~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 175 ALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 5432221111 112 335566888888865433
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=8.6e-09 Score=101.20 Aligned_cols=136 Identities=24% Similarity=0.294 Sum_probs=95.0
Q ss_pred ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCC-cccCCCcc
Q 048180 464 CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPS-LAELVELM 542 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~ 542 (824)
...+..|+.+++++|. +..+.++ ..-.+.+|+|++|.|.+..+-+ +..|++|+.|||++| .++.+.. -.+|-|.+
T Consensus 280 ~dTWq~LtelDLS~N~-I~~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL-ITQIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccc-hhhhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 3445667778888874 4555444 3556778888888888766543 777788888888875 3444443 34677778
Q ss_pred EEeccCCCCcccCcccccCCCCcEEeccCccccccch-hhhcCCCCCcEEEeecCcccccccc
Q 048180 543 VLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 543 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
+|.+++|.++.+ .++++|.+|..|++++|++..+.. ..+|+|+.|+++.+.+|.+...+..
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 888888877777 477788888888888888754432 3378888888888888877665543
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=3.4e-09 Score=109.00 Aligned_cols=135 Identities=15% Similarity=0.078 Sum_probs=95.1
Q ss_pred CcCcceeeecccccceeec----cccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCC
Q 048180 682 PWNTSELLLVHCNAVTQMT----IPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSN 757 (824)
Q Consensus 682 ~~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 757 (824)
...|+.|..++|....+.. ..+.++|+.|.+++|..+....-.....+.+.|+.+++..|..+.+-. +..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t------L~s 366 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT------LAS 366 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh------Hhh
Confidence 4678999999998876653 235799999999999877665333334567888888888886554331 222
Q ss_pred CcccccccCeEeccCCcchhcc-----ccCcccCCCccEEEecCCCCcCCC-CccccccccceeccCCCCc
Q 048180 758 PQVCWRSLRKLILSNLPELRFM-----YSGEAQCDFVQTIGIWSCCKLERF-PISLWVENYAQKLKSPCSL 822 (824)
Q Consensus 758 ~~~~~p~L~~L~l~~~~~L~~~-----~~~~~~lpsL~~L~i~~C~~L~~l-p~~~~~l~~L~~L~~~~~~ 822 (824)
...+.|.|++|.+++|....+. ..+..++..|+.+++.+||.+..- -..+.++++|+.+++-+|.
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 3446889999999988666544 333456777888999999887643 2346677888888877774
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=7.8e-08 Score=106.53 Aligned_cols=188 Identities=24% Similarity=0.353 Sum_probs=129.0
Q ss_pred EEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcc-cccEEecccccccccCC-CcccCCCccEEeccCC
Q 048180 472 TLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLK-YLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGS 549 (824)
Q Consensus 472 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~ 549 (824)
.+....+........ ...++.+..|++.++.+.++|..++.+. +|+.|+++++ .+..+| .++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh--hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 466666643232222 3456788889999998888888888885 8999999884 677776 5888999999999999
Q ss_pred CCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEE
Q 048180 550 GIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFT 629 (824)
Q Consensus 550 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 629 (824)
++..+|...+.+++|+.|+++++.+..+|.. ++.+..|++|.+.+|... ..+..+..+.++..+.+.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccC
Confidence 9998888877888899999999888888764 456667888888887422 123445666666666655
Q ss_pred ecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceeeccccCCCCCE
Q 048180 630 FVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKF 709 (824)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~ 709 (824)
.+.+..++..+ ..+++++.|++.++.......++.+.+|+.
T Consensus 241 ~n~~~~~~~~~---------------------------------------~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~ 281 (394)
T COG4886 241 NNKLEDLPESI---------------------------------------GNLSNLETLDLSNNQISSISSLGSLTNLRE 281 (394)
T ss_pred Cceeeeccchh---------------------------------------ccccccceeccccccccccccccccCccCE
Confidence 54443221111 234456666666655444444666777777
Q ss_pred EEEec
Q 048180 710 LEIFN 714 (824)
Q Consensus 710 L~L~~ 714 (824)
|++++
T Consensus 282 L~~s~ 286 (394)
T COG4886 282 LDLSG 286 (394)
T ss_pred EeccC
Confidence 77766
No 47
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.52 E-value=1.5e-07 Score=95.00 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc--CCHHHHHHHHHHhcccccCCCcchh--hhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE--DDLKELQIKIARKIDFVLSSDESVR--DNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~ 175 (824)
-..++|+|++|+|||||++.+|+.... ++|+.++|+++++. +++.++++++...+-.......... .....+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~---~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK---NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc---ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754 47999999998887 8999999999443322111111111 1111222
Q ss_pred HHHHHH-HcCCeEEEEEeCCCcc
Q 048180 176 NALQTL-LETGKILLILDNMRKA 197 (824)
Q Consensus 176 ~~l~~~-l~~kr~LlVlDdv~~~ 197 (824)
...+.. -+|+++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222221 2489999999998654
No 48
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.51 E-value=4e-07 Score=95.60 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=63.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC--CHHHHHHHHHHhcccccCCCcchhh-----hHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED--DLKELQIKIARKIDFVLSSDESVRD-----NAIL 173 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~ 173 (824)
.-.+|+|++|+||||||++||+.... +||+.++||.+++.. .+.+++++|...+-........... ..-.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~---nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITT---NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh---hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999765 389999999999988 7888888887433222221111111 1111
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 174 LENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 174 l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
..+++. -.|++++|++|++...
T Consensus 247 ~Ae~~~--e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLV--EHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHH--HcCCCEEEEEEChHHH
Confidence 122222 3589999999999654
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=1.1e-07 Score=105.51 Aligned_cols=174 Identities=28% Similarity=0.362 Sum_probs=119.6
Q ss_pred CCccEEEeccCCCcCCCCccCCC--CccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEec
Q 048180 446 GDVERVSLMGNNLRELRTCPMFC--KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLL 523 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 523 (824)
..+..+.+.++.+..++...... +|+.|++++|. +..+|.. ...++.|+.|++++|.+..+|...+.+.+|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 35677777777777777744443 77888887775 4455322 46777788888888887777776667777888888
Q ss_pred ccccccccCCC-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccc
Q 048180 524 QNCIYLTCLPS-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLP 602 (824)
Q Consensus 524 ~~c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~ 602 (824)
++| .+..+|. ++.+.+|++|.++++.+...+..+.++.++..+.+.++.+..++. .++.+++|++|++++|.+..+
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i- 270 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSI- 270 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-hhccccccceecccccccccc-
Confidence 774 5667774 566666888888777666677777777777777777776655433 367777788888777765443
Q ss_pred ccccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 603 RSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 603 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
..++.+.+|+.|+++++.+...
T Consensus 271 ------------~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 271 ------------SSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ------------ccccccCccCEEeccCcccccc
Confidence 1266777777777777665543
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.6e-09 Score=100.96 Aligned_cols=139 Identities=17% Similarity=0.081 Sum_probs=76.6
Q ss_pred hhhcCCCccEEEEEecC-ccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccc
Q 048180 616 DVRKLRNLNVFDFTFVS-LQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCN 694 (824)
Q Consensus 616 ~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 694 (824)
.+.+-.+|+.|+++.++ +++........+++.|..|+++|+.+..... .....+.-++|..|+++||.
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-----------tv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-----------TVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-----------hHHHhhhchhhhhhhhhhhH
Confidence 34444444444444332 2222222233445556666666654422111 11112234678888888876
Q ss_pred cceee----c-cccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEe
Q 048180 695 AVTQM----T-IPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLI 769 (824)
Q Consensus 695 ~~~~~----~-l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~ 769 (824)
.--.. . ...+|+|..|+|++|..++.- -...+..|+.|++|.++.|..+- | +. -..+...|+|.+|+
T Consensus 298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~--p-~~----~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDII--P-ET----LLELNSKPSLVYLD 369 (419)
T ss_pred hhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCC--h-HH----eeeeccCcceEEEE
Confidence 32221 1 245788888888888777663 23345678888888888887652 1 10 11334678888888
Q ss_pred ccCC
Q 048180 770 LSNL 773 (824)
Q Consensus 770 l~~~ 773 (824)
+.+|
T Consensus 370 v~g~ 373 (419)
T KOG2120|consen 370 VFGC 373 (419)
T ss_pred eccc
Confidence 8877
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.42 E-value=1.7e-06 Score=95.65 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=91.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
.....+-++|++|+||||+|+.+++..... | +.++......+-+++++... ...
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~----~-----~~l~a~~~~~~~ir~ii~~~-----------------~~~ 87 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATDAP----F-----EALSAVTSGVKDLREVIEEA-----------------RQR 87 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC----E-----EEEecccccHHHHHHHHHHH-----------------HHh
Confidence 345577889999999999999999875332 2 22222211111122222211 110
Q ss_pred HHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCcEEEE--EcCChh--hh-hccccccccccCCCChHHHHHHHHHH
Q 048180 178 LQTLLETGKILLILDNMRKAF--SLEEIGIPTLSNSLRIII--TSPSSS--LC-RQMKCRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~gs~Iiv--TTr~~~--v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
...+++.+|++|+++... +.+.+ ++....|..++| ||.+.. +. ........+.+.+++.++.+.++.+.
T Consensus 88 ---~~~g~~~vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 88 ---RSAGRRTILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred ---hhcCCceEEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHH
Confidence 113688999999998763 33333 222334554444 344322 11 11112257899999999999999886
Q ss_pred hcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 048180 251 VGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHH 287 (824)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l 287 (824)
+.........--.+..+.|++.|+|-|..+..+-...
T Consensus 164 l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 164 LEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred HHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5432110101223556788999999987765554443
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=2.8e-08 Score=102.38 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=90.9
Q ss_pred CcCcceeeecccccceeec---c-ccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCC
Q 048180 682 PWNTSELLLVHCNAVTQMT---I-PNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSN 757 (824)
Q Consensus 682 ~~~L~~L~l~~~~~~~~~~---l-~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 757 (824)
.++|+.|.+.+|....... + .+.+.|+.+++.+|....+..-.....+.|.|+.|.+++|..+++-.. .....
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi---~~l~~ 395 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI---RHLSS 395 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh---hhhhh
Confidence 4778888888888766552 2 357889999998886555442222345789999999999977765421 11122
Q ss_pred CcccccccCeEeccCCcchhccc-cCcccCCCccEEEecCCCCcCCCCcc--ccccccceeccCC
Q 048180 758 PQVCWRSLRKLILSNLPELRFMY-SGEAQCDFVQTIGIWSCCKLERFPIS--LWVENYAQKLKSP 819 (824)
Q Consensus 758 ~~~~~p~L~~L~l~~~~~L~~~~-~~~~~lpsL~~L~i~~C~~L~~lp~~--~~~l~~L~~L~~~ 819 (824)
...+...|+.|.+.+||.+.+-. .-+..+++|+.+++.+|....+=|.. -.+++++++....
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 34467789999999998776442 33567889999999999887764432 3356666655443
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=1.7e-06 Score=79.22 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhc-cccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYR-SHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
-+++.|+|.+|+|||++++.+.+.....+. ..-..++|+.+....+...+...|+.+++......... ..+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTS----DELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-H----HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCH----HHHHHHH
Confidence 478999999999999999999998653210 00235679999888899999999999998655542223 3333444
Q ss_pred HHHHcCC-eEEEEEeCCCcc-c--ccchhcCCCCCCCcEEEEEcCC
Q 048180 179 QTLLETG-KILLILDNMRKA-F--SLEEIGIPTLSNSLRIIITSPS 220 (824)
Q Consensus 179 ~~~l~~k-r~LlVlDdv~~~-~--~~~~l~~~~~~~gs~IivTTr~ 220 (824)
.+.+... ..+||+|+++.. . .++.+..-....+.+||+.-+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 4445454 469999999775 2 2333322222444466665543
No 54
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=1.2e-06 Score=79.75 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
-+++.|.|+-|+||||++++++++... -..++++...+.........+ +.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~-----~~~~~yi~~~~~~~~~~~~~~---------------------~~~~~~ 55 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP-----PENILYINFDDPRDRRLADPD---------------------LLEYFL 55 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-----cccceeeccCCHHHHHHhhhh---------------------hHHHHH
Confidence 368999999999999999999987641 234667765543221100000 122222
Q ss_pred HHHcCCeEEEEEeCCCcccccchhcC--CCCCCCcEEEEEcCChhhhhc------cccccccccCCCChHHH
Q 048180 180 TLLETGKILLILDNMRKAFSLEEIGI--PTLSNSLRIIITSPSSSLCRQ------MKCRERFALNLLTDEEA 243 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~~~~l~~--~~~~~gs~IivTTr~~~v~~~------~~~~~~~~l~~L~~~~~ 243 (824)
+....++.+|+||+|....+|..... .......+|++|+.+...... .+....+++.||+..|.
T Consensus 56 ~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 56 ELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 22334788899999998888876521 222235699999998766532 12234688999988763
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.26 E-value=5.3e-06 Score=84.13 Aligned_cols=151 Identities=16% Similarity=0.118 Sum_probs=87.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
....|.|+|..|+|||+||+.+++..... ....+++.++.-.+ .. ..+...+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~----~~~~~~i~~~~~~~------~~------------------~~~~~~~ 88 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER----GKSAIYLPLAELAQ------AD------------------PEVLEGL 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEeHHHHHH------hH------------------HHHHhhc
Confidence 34688899999999999999999886432 23445555432211 00 0011111
Q ss_pred HHHHcCCeEEEEEeCCCccc---ccc-hhcC---CCCCCCcEEEEEcCChh---------hhhccccccccccCCCChHH
Q 048180 179 QTLLETGKILLILDNMRKAF---SLE-EIGI---PTLSNSLRIIITSPSSS---------LCRQMKCRERFALNLLTDEE 242 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~---~~~-~l~~---~~~~~gs~IivTTr~~~---------v~~~~~~~~~~~l~~L~~~~ 242 (824)
.+.-+||+||++... .|. .+.. .....+.+||+||+... +.+.+.....+++.+++.++
T Consensus 89 -----~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 89 -----EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred -----ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence 123489999998654 232 2211 11123457888887532 12222223578899999999
Q ss_pred HHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 243 AYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 243 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
-..++...+-..+...+ ++..+.+++.+.|.|..+..+-.
T Consensus 164 ~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 164 KIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 88888775532221122 23446666778888776655543
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=9.7e-07 Score=68.50 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=40.7
Q ss_pred CCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 539 VELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 539 ~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
++|++|++++|+++.+|. .+..+++|++|++++|.+..++++.|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356677777777776664 45667777777777777777766667777777777777664
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=6.7e-07 Score=90.52 Aligned_cols=38 Identities=32% Similarity=0.313 Sum_probs=18.2
Q ss_pred CCCCccEEEcCCCCCccc---CChhhhcCCCCCcEEEecCC
Q 048180 466 MFCKLTTLFLQGNPLDLQ---LDNDFFNSFPNLKILNLSDT 503 (824)
Q Consensus 466 ~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~ 503 (824)
....++.|+++||.+-.. .-...+.+.+.|+.-++++-
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ 68 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM 68 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence 344566666666643211 11122344556666666554
No 58
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=3.9e-06 Score=88.87 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=65.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc--CCHHHHHHHHHHhcccccCCCcchh--hhHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE--DDLKELQIKIARKIDFVLSSDESVR--DNAILLEN 176 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~~ 176 (824)
..++|+|++|.|||||++.+++.... +||+..+||.+.+. .++.++++.++..+-.......... .....+.+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~---nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR---NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc---cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 56899999999999999999998753 48999999999977 7899999999654432222111111 11222222
Q ss_pred HHHHH-HcCCeEEEEEeCCCcc
Q 048180 177 ALQTL-LETGKILLILDNMRKA 197 (824)
Q Consensus 177 ~l~~~-l~~kr~LlVlDdv~~~ 197 (824)
..+.. -+|++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22222 3589999999998654
No 59
>PRK08727 hypothetical protein; Validated
Probab=98.19 E-value=1.4e-05 Score=80.85 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=87.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
..+.|+|..|+|||+||+++++....+ ...++++++.+ ....+. ...+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~----~~~~~y~~~~~------~~~~~~------------------~~~~~l-- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA----GRSSAYLPLQA------AAGRLR------------------DALEAL-- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEeHHH------hhhhHH------------------HHHHHH--
Confidence 459999999999999999999986542 23455665322 111111 111122
Q ss_pred HHcCCeEEEEEeCCCccc---ccchhcCCC----CCCCcEEEEEcCC---------hhhhhccccccccccCCCChHHHH
Q 048180 181 LLETGKILLILDNMRKAF---SLEEIGIPT----LSNSLRIIITSPS---------SSLCRQMKCRERFALNLLTDEEAY 244 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~---~~~~l~~~~----~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~~~~ 244 (824)
.+--+||+||+.... .|....+.. ..+|..||+|++. ..+.+.+.....+++++++.++-.
T Consensus 92 ---~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~ 168 (233)
T PRK08727 92 ---EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARA 168 (233)
T ss_pred ---hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHH
Confidence 234699999997542 233221111 1245679999985 222333344568899999999999
Q ss_pred HHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 245 LLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 245 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
.++.+++...+-..+ ++...-|++.++|-.-++
T Consensus 169 ~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 169 AVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 999987754322122 234566777777655443
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=4e-06 Score=97.54 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=69.2
Q ss_pred CcEEEecCCCC-ccccccccCcccccEEecccccccccCC-CcccCCCccEEeccCCCCc-ccCcccccCCCCcEEeccC
Q 048180 495 LKILNLSDTSM-GILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIA-EFPDGMNHLTKLLFLNLSR 571 (824)
Q Consensus 495 Lr~L~L~~~~~-~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~ 571 (824)
++.|+|+++.+ ..+|..++.+.+|++|+|++|.....+| .++++++|++|+|++|++. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777776 4566677777777777777765555667 4777777777777777776 6777777777777777777
Q ss_pred cccc-ccchhhhcC-CCCCcEEEeecCc
Q 048180 572 TRVR-NFPLHLVTS-LHNLQEFSMIGCD 597 (824)
Q Consensus 572 ~~~~-~~~~~~l~~-L~~L~~L~l~~~~ 597 (824)
|.+. .+|.. ++. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 7764 34433 443 3456667776664
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.14 E-value=1.3e-05 Score=81.45 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=88.7
Q ss_pred ccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 96 YNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 96 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
+.+.+.-+-+||++|.||||||+.+.+..+.. ...||..|....-..=.++|.++..
T Consensus 158 eq~~ipSmIlWGppG~GKTtlArlia~tsk~~------SyrfvelSAt~a~t~dvR~ife~aq----------------- 214 (554)
T KOG2028|consen 158 EQNRIPSMILWGPPGTGKTTLARLIASTSKKH------SYRFVELSATNAKTNDVRDIFEQAQ----------------- 214 (554)
T ss_pred HcCCCCceEEecCCCCchHHHHHHHHhhcCCC------ceEEEEEeccccchHHHHHHHHHHH-----------------
Confidence 34677888899999999999999999875431 2567777665544444455554321
Q ss_pred HHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCcEEEE--EcCChhh---hhccccccccccCCCChHHHHHHHH
Q 048180 176 NALQTLLETGKILLILDNMRKA--FSLEEIGIPTLSNSLRIII--TSPSSSL---CRQMKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~gs~Iiv--TTr~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
+. ..+.++|.+|.+|.|..- .+-+.+ +|.-.+|..++| ||-+... +.....-.++.|++|+.++...++.
T Consensus 215 ~~--~~l~krkTilFiDEiHRFNksQQD~f-LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 215 NE--KSLTKRKTILFIDEIHRFNKSQQDTF-LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred HH--HhhhcceeEEEeHHhhhhhhhhhhcc-cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 00 122378899999999754 344444 788888987776 7766433 2223334689999999999988887
Q ss_pred HHh
Q 048180 249 NEV 251 (824)
Q Consensus 249 ~~~ 251 (824)
+..
T Consensus 292 rai 294 (554)
T KOG2028|consen 292 RAI 294 (554)
T ss_pred HHH
Confidence 743
No 62
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.3e-06 Score=97.27 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=38.0
Q ss_pred ccEEecccccccccCC-CcccCCCccEEeccCCCCc-ccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeec
Q 048180 518 LTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIA-EFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIG 595 (824)
Q Consensus 518 L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~ 595 (824)
++.|+|++|.....+| .+++|++|+.|+|++|.+. .+|..++.+++|+.|++++|.+....+..+++|++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4444555444333444 2555555555555555444 4444455555555555555544332223345555555555555
Q ss_pred Cc
Q 048180 596 CD 597 (824)
Q Consensus 596 ~~ 597 (824)
|.
T Consensus 500 N~ 501 (623)
T PLN03150 500 NS 501 (623)
T ss_pred Cc
Confidence 44
No 63
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.13 E-value=0.00013 Score=83.50 Aligned_cols=184 Identities=13% Similarity=0.137 Sum_probs=105.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhcc-ccc--eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRS-HFN--TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
-.++.|+|++|.|||+.++.|.+........ ... .+++|....-.+...++..|.+++........ .....+.+
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~G---lsS~evLe 857 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNA---LNSFKILD 857 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCcc---ccHHHHHH
Confidence 4688999999999999999999877543111 122 35677666667788899999988843222111 11112222
Q ss_pred HHHHHH-c--CCeEEEEEeCCCcccc-----c-chhcCCCCCCCcEEEE--EcCCh--------hhhhccccccccccCC
Q 048180 177 ALQTLL-E--TGKILLILDNMRKAFS-----L-EEIGIPTLSNSLRIII--TSPSS--------SLCRQMKCRERFALNL 237 (824)
Q Consensus 177 ~l~~~l-~--~kr~LlVlDdv~~~~~-----~-~~l~~~~~~~gs~Iiv--TTr~~--------~v~~~~~~~~~~~l~~ 237 (824)
.+.+.+ + +...+||||+|+.... + ..+..+. ..+++|+| +|... .+...++ ...+...+
T Consensus 858 rLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~P 935 (1164)
T PTZ00112 858 RLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSP 935 (1164)
T ss_pred HHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCC
Confidence 333232 2 2235999999975531 1 1112222 23454443 33221 2222222 22356699
Q ss_pred CChHHHHHHHHHHhcCcC-CCCchhHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 048180 238 LTDEEAYLLLINEVGLAG-KVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHL 288 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~ 288 (824)
.+.++-.+++..++.... ...+..++-+|+.++...|-.-.||.++-.+..
T Consensus 936 YTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 936 YKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 999999999999886432 123444555555555555556677766655443
No 64
>PRK09087 hypothetical protein; Validated
Probab=98.12 E-value=1.3e-05 Score=80.36 Aligned_cols=138 Identities=13% Similarity=0.103 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
-+.+.|+|..|+|||+|++..+..... .+++.. .+..+++ ..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~---------~~i~~~------~~~~~~~---------------------~~~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA---------LLIHPN------EIGSDAA---------------------NAAA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC---------EEecHH------HcchHHH---------------------Hhhh
Confidence 367899999999999999988875321 133221 1111111 1111
Q ss_pred HHHcCCeEEEEEeCCCccc----ccchhcCCCCCCCcEEEEEcCC---------hhhhhccccccccccCCCChHHHHHH
Q 048180 180 TLLETGKILLILDNMRKAF----SLEEIGIPTLSNSLRIIITSPS---------SSLCRQMKCRERFALNLLTDEEAYLL 246 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~----~~~~l~~~~~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~~~~~L 246 (824)
+ -+|++||+.... .+-.+.-.....|..||+|++. ....+.+....++++++++.++-.++
T Consensus 88 ----~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 ----E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred ----c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 1 378889996432 1111111122346778888873 34455556667899999999999999
Q ss_pred HHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 247 LINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
+.+++-..+-..+ +++..-|++.+.|..-++..
T Consensus 162 L~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 9988854332122 34556677777776655543
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.11 E-value=2.3e-05 Score=76.09 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
+.+.-+-.||++|+||||||+.+++..... |. +.+...-....++ ..++.+
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~----~~---~~sg~~i~k~~dl-~~il~~--------------------- 98 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVN----FK---ITSGPAIEKAGDL-AAILTN--------------------- 98 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT------EE---EEECCC--SCHHH-HHHHHT---------------------
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCC----eE---eccchhhhhHHHH-HHHHHh---------------------
Confidence 457788899999999999999999986543 31 2221110001111 111111
Q ss_pred HHHHHcCCeEEEEEeCCCccc--ccchh-------cC--CCC-CCC-----------cEEEEEcCChhhhhcccccc--c
Q 048180 178 LQTLLETGKILLILDNMRKAF--SLEEI-------GI--PTL-SNS-----------LRIIITSPSSSLCRQMKCRE--R 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~--~~~~l-------~~--~~~-~~g-----------s~IivTTr~~~v~~~~~~~~--~ 232 (824)
+ +++-+|.+|.++... +-+.+ .+ ..+ +.+ +-|=.|||...+..-+.... +
T Consensus 99 l-----~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~ 173 (233)
T PF05496_consen 99 L-----KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIV 173 (233)
T ss_dssp -------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEE
T ss_pred c-----CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhccee
Confidence 1 345567778876542 11111 11 111 111 12346888866655443332 4
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.+++.-+.+|-.++..+.+..-+ -+--++.+.+|++++.|-|--+.-+
T Consensus 174 ~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 174 LRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred cchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 57999999999999887765433 1223467899999999999654433
No 66
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.2e-05 Score=79.67 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=89.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhh--hccccceEEEEEe-CCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQ--YRSHFNTFIWVEA-SYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
....-++|+.|+||||+|+.+++..-.. -..|.|...|... .......+ ++++.+.+...
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~---------------- 88 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKK---------------- 88 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcC----------------
Confidence 4677899999999999999999875321 1345666555542 22222222 22333322110
Q ss_pred HHHHHHcCCeEEEEEeCCC--cccccchhc--CCCCCCCcEEEEEcCChhhh-hc-cccccccccCCCChHHHHHHHHHH
Q 048180 177 ALQTLLETGKILLILDNMR--KAFSLEEIG--IPTLSNSLRIIITSPSSSLC-RQ-MKCRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~--~~~~~~~l~--~~~~~~gs~IivTTr~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
-..+++=++|+|+++ +...++.+. +.-+..++.+|++|.+.+.. .. ......+++.++++++....+.+.
T Consensus 89 ----p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 89 ----PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred ----cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 011444455566554 445566652 33344677777777654322 11 122358899999999987776554
Q ss_pred hcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 251 VGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
... .+ .+.++.++..++|.|.-+..
T Consensus 165 ~~~----~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 165 YND----IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hcC----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 321 11 22356788999999875543
No 67
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.09 E-value=1.1e-05 Score=84.37 Aligned_cols=292 Identities=15% Similarity=0.115 Sum_probs=172.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEE-EEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFI-WVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
...+-+.++|.|||||||++-++.. .... |..-. +|....-.+...+.-.....++....... ...+.+..
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~----~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~ 83 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASE----YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVR 83 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-Hhhh----cccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHH
Confidence 4568999999999999999999988 4443 65444 44444444455555555555665443321 12223333
Q ss_pred HHHHHHcCCeEEEEEeCCCcccc-cchh--cCCCCCCCcEEEEEcCChhhhhccccccccccCCCChH-HHHHHHHHHhc
Q 048180 177 ALQTLLETGKILLILDNMRKAFS-LEEI--GIPTLSNSLRIIITSPSSSLCRQMKCRERFALNLLTDE-EAYLLLINEVG 252 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~~~-~~~l--~~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~ 252 (824)
++ ..+|.++|+||--+..+ -... .+......-.|+.|+|.... .....++.+.+|+.- ++.++|...+.
T Consensus 84 ~~----~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 84 RI----GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred HH----hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHH
Confidence 34 48999999999755422 1111 01112223378888886432 344567888888864 79999987774
Q ss_pred CcCC--CCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhc
Q 048180 253 LAGK--VLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFD-FISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQ 329 (824)
Q Consensus 253 ~~~~--~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~ 329 (824)
.... ............|.++..|.|++|...++..++....- .+....-+..+........-........+..||.-
T Consensus 157 ~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~l 236 (414)
T COG3903 157 LVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYAL 236 (414)
T ss_pred HhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHh
Confidence 3221 12233445678899999999999999998877322111 11111111111111111223345678899999999
Q ss_pred ccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhccccccccchHHHHhhHHHHHHHHHhcCccccccc-CcCCc
Q 048180 330 LNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGEEMEGIDERFGKAKEILEELKDASFLVGIIS-DENEI 408 (824)
Q Consensus 330 L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~-~~~~~ 408 (824)
|... .+.-|--++.|...+... ...|.+-|=... ...-....-+..+++.+++ .... .....
T Consensus 237 Ltgw------e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~------~~~y~~~~a~~ll~~kslv-~a~~~~~~a~ 299 (414)
T COG3903 237 LTGW------ERALFGRLAVFVGGFDLG----LALAVAAGADVD------VPRYLVLLALTLLVDKSLV-VALDLLGRAR 299 (414)
T ss_pred hhhH------HHHHhcchhhhhhhhccc----HHHHHhcCCccc------cchHHHHHHHHHHhhccch-hhhhhhhHHH
Confidence 9998 899999999998876644 234555443321 0112234456788888888 3311 11234
Q ss_pred cccchHHHHHHHh
Q 048180 409 VKMHPLMFDMASK 421 (824)
Q Consensus 409 ~~mhdl~~dl~~~ 421 (824)
|+.-+-++.++..
T Consensus 300 ~Rl~eT~r~Yala 312 (414)
T COG3903 300 YRLLETGRRYALA 312 (414)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 68
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.08 E-value=3e-05 Score=78.57 Aligned_cols=145 Identities=16% Similarity=0.095 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+.+.|+|+.|+|||+||+.+++..... -..+.++.+..... ....+.+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~----~~~v~y~~~~~~~~------------------------~~~~~~~~~~ 96 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR----GRAVGYVPLDKRAW------------------------FVPEVLEGME 96 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEEHHHHhh------------------------hhHHHHHHhh
Confidence 3578999999999999999999976532 22445555532100 0011122221
Q ss_pred HHHcCCeEEEEEeCCCcc---cccchhc----CCCCCCC-cEEEEEcCCh---------hhhhccccccccccCCCChHH
Q 048180 180 TLLETGKILLILDNMRKA---FSLEEIG----IPTLSNS-LRIIITSPSS---------SLCRQMKCRERFALNLLTDEE 242 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~---~~~~~l~----~~~~~~g-s~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~ 242 (824)
+--+|++||+... .+|+... ......| .++|+||+.. .+.+++....+++++++++++
T Consensus 97 -----~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 97 -----QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred -----hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 1248899999654 3444321 1112234 3799998753 334455556789999999999
Q ss_pred HHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 243 AYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 243 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
-.+++.+++...+-..+ +++..-|++.+.|-.-++
T Consensus 172 ~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 172 KLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHH
Confidence 99998876654321122 345566777776655443
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.08 E-value=3e-06 Score=65.71 Aligned_cols=57 Identities=33% Similarity=0.484 Sum_probs=28.1
Q ss_pred CccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccc
Q 048180 469 KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNC 526 (824)
Q Consensus 469 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c 526 (824)
+|++|++.+|. +..+|...|..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555542 444454445555555555555555544443 3445555555555443
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00061 Score=73.24 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=102.8
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTLL 182 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l 182 (824)
+.|+|..|.|||+.++.|++..... ....+ .+.|.+-...++.+++.+|+.+++..........+....+.+.+..
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~-~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~-- 120 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEES-SANVE-VVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK-- 120 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhh-hccCc-eEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh--
Confidence 8899999999999999999998764 11222 7888888889999999999999873222222223333333343332
Q ss_pred cCCeEEEEEeCCCcccccc--h---h-cCCCCCCCcEE--EEEcCChhhhh--------ccccccccccCCCChHHHHHH
Q 048180 183 ETGKILLILDNMRKAFSLE--E---I-GIPTLSNSLRI--IITSPSSSLCR--------QMKCRERFALNLLTDEEAYLL 246 (824)
Q Consensus 183 ~~kr~LlVlDdv~~~~~~~--~---l-~~~~~~~gs~I--ivTTr~~~v~~--------~~~~~~~~~l~~L~~~~~~~L 246 (824)
.++.++||||+++....-. . + +.+.. ..++| |..+-+..... .++.. .+...+=+.+|-..+
T Consensus 121 ~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~-~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~I 198 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDGEVLYSLLRAPGE-NKVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDI 198 (366)
T ss_pred cCCeEEEEEcchhhhccccchHHHHHHhhccc-cceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHH
Confidence 3688999999998764331 1 1 22222 24433 33333332222 22222 255677777777777
Q ss_pred HHHHh---cCcCCCCchhHHHHHHHHHHHhC-CChHHHHHHH
Q 048180 247 LINEV---GLAGKVLEGEIEFGLKNIAKKCG-GLPLAIITFA 284 (824)
Q Consensus 247 f~~~~---~~~~~~~~~~~~~~~~~i~~~c~-GlPlai~~~g 284 (824)
+..++ |..+. ..+..-+++..++..-+ -.-.||..+-
T Consensus 199 l~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 199 LRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred HHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 77765 34443 33333344444444444 4455555443
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=5.3e-07 Score=88.97 Aligned_cols=183 Identities=13% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccc
Q 048180 586 HNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRG 665 (824)
Q Consensus 586 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 665 (824)
+.||+|++++..++. .....-+..+++|+.|.+.++.+...- .....+-.+|+.++++.++- +..
T Consensus 185 sRlq~lDLS~s~it~----------stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~~L~~lnlsm~sG----~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV----------STLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNSNLVRLNLSMCSG----FTE 249 (419)
T ss_pred hhhHHhhcchhheeH----------HHHHHHHHHHHhhhhccccccccCcHH-HHHHhccccceeeccccccc----cch
Confidence 358888888765332 122334666777777777776654321 11122335566666554321 000
Q ss_pred cchhhhccCCCCCccCCcCcceeeecccccceee---ccc-cCCCCCEEEEecCCCccccccch-hhhhccccceecccc
Q 048180 666 NTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM---TIP-NLQNLKFLEIFNCEGLKYLFKYG-VWCCLRNLEELVIAN 740 (824)
Q Consensus 666 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~---~l~-~l~~L~~L~L~~c~~l~~l~~~~-~l~~l~~L~~L~l~~ 740 (824)
.... .....++.|.+|++++|...+.. .+. --++|+.|+|+||...-...... ....+|+|.+|+|+.
T Consensus 250 n~~~-------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 250 NALQ-------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred hHHH-------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 0000 01123455566666666543332 011 12456666666654321111111 123556666666666
Q ss_pred ccchhhhhcccCCCCCCCcccccccCeEeccCCcchhc-cccCcccCCCccEEEecCC
Q 048180 741 CRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRF-MYSGEAQCDFVQTIGIWSC 797 (824)
Q Consensus 741 ~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~-~~~~~~~lpsL~~L~i~~C 797 (824)
|-.++.-.. ..+-.|+.|++|.++.|-.+.- --..+...|+|..|++.||
T Consensus 323 ~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 323 SVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccCchHH-------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 555442110 0122456666666666532210 0112445566666666665
No 72
>PRK05642 DNA replication initiation factor; Validated
Probab=98.02 E-value=4.1e-05 Score=77.55 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=86.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
..+.|+|..|+|||.||+.+++....+ + ..++|++..+ +... ...+.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~--~~v~y~~~~~------~~~~------------------~~~~~~~~~- 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--G--EPAVYLPLAE------LLDR------------------GPELLDNLE- 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--C--CcEEEeeHHH------HHhh------------------hHHHHHhhh-
Confidence 678999999999999999999876432 1 2456665422 2111 011222232
Q ss_pred HHcCCeEEEEEeCCCcc---cccchhcCC----CCCCCcEEEEEcCChhh---------hhccccccccccCCCChHHHH
Q 048180 181 LLETGKILLILDNMRKA---FSLEEIGIP----TLSNSLRIIITSPSSSL---------CRQMKCRERFALNLLTDEEAY 244 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~---~~~~~l~~~----~~~~gs~IivTTr~~~v---------~~~~~~~~~~~l~~L~~~~~~ 244 (824)
+- =+||+||+... ..|+...+. ...+|.+||+|++...- .+++....+++++++++++-.
T Consensus 97 ---~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 97 ---QY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred ---hC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 22 26889999643 345432111 12356788888875322 223333457889999999999
Q ss_pred HHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHH
Q 048180 245 LLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAII 281 (824)
Q Consensus 245 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 281 (824)
++..+++...+-..+ +++..-|++.+.|-.-++.
T Consensus 173 ~il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 173 RALQLRASRRGLHLT---DEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 998876654322122 3556667777766654443
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=98.01 E-value=0.00027 Score=79.89 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+.+-|+|++|+||||+|+.+++... |+ .+-+..++..+ .+.+..++........ +
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~------~~-~ielnasd~r~-~~~i~~~i~~~~~~~s---------------l- 94 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG------WE-VIELNASDQRT-ADVIERVAGEAATSGS---------------L- 94 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC------CC-EEEEccccccc-HHHHHHHHHHhhccCc---------------c-
Confidence 67899999999999999999998752 22 23333443222 2223333322110000 0
Q ss_pred HHHcCCeEEEEEeCCCcccc------cchhcCCCCCCCcEEEEEcCCh-hhhh-c-cccccccccCCCChHHHHHHHHHH
Q 048180 180 TLLETGKILLILDNMRKAFS------LEEIGIPTLSNSLRIIITSPSS-SLCR-Q-MKCRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~gs~IivTTr~~-~v~~-~-~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
...++-+||+|+++.... +..+.-.....+..||+|+.+. .... . -.....+++.+++.++....+.+.
T Consensus 95 --~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i 172 (482)
T PRK04195 95 --FGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRI 172 (482)
T ss_pred --cCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHH
Confidence 002678999999987532 2333111112334566665432 1111 1 112346888999999988888877
Q ss_pred hcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 048180 251 VGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHL 288 (824)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~ 288 (824)
+...+...+ .++...|++.++|-.-.+...-..++
T Consensus 173 ~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 173 CRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 754442222 34567889999997766554444444
No 74
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=0.00015 Score=72.46 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=87.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
....+.|+|..|+|||.|.+++++....... . ..+++++ ..++...++..+.. .....+.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~-~~v~y~~------~~~f~~~~~~~~~~---------~~~~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHP-G-KRVVYLS------AEEFIREFADALRD---------GEIEEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCT-T-S-EEEEE------HHHHHHHHHHHHHT---------TSHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccc-c-ccceeec------HHHHHHHHHHHHHc---------ccchhhhhhh
Confidence 3456789999999999999999998765311 1 1344543 45566666655432 1112333333
Q ss_pred HHHHcCCeEEEEEeCCCccc---ccchhcC----CCCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHH
Q 048180 179 QTLLETGKILLILDNMRKAF---SLEEIGI----PTLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEE 242 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~---~~~~l~~----~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~ 242 (824)
..-=+|++||++... .|....+ .....|.+||+|++.. ++.+.+....+++++++++++
T Consensus 96 -----~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 96 -----RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp -----CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred -----hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 345688999997653 2332211 1223577899999653 223344445688999999999
Q ss_pred HHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 243 AYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 243 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
-.+++.+++...+-.. -+++.+-|++.+.+..
T Consensus 171 r~~il~~~a~~~~~~l---~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 171 RRRILQKKAKERGIEL---PEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHHHHTT--S----HHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHhCCCC---cHHHHHHHHHhhcCCH
Confidence 9999988886543212 2234455555554443
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.4e-06 Score=96.71 Aligned_cols=109 Identities=29% Similarity=0.390 Sum_probs=77.9
Q ss_pred hcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEe
Q 048180 489 FNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLN 568 (824)
Q Consensus 489 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 568 (824)
+..++.|..|++.++.+..+...+..+.+|++|++++ +.++.+..+..+..|+.|++.+|.|..++ ++..+++|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 4567777888888887777665577778888888887 46777777777777888888888777664 455577788888
Q ss_pred ccCccccccch-hhhcCCCCCcEEEeecCcccc
Q 048180 569 LSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 569 l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~ 600 (824)
+++|.+..+.. . +..+.+|+.+.+.+|.+..
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 88877766654 2 3677777777777765433
No 76
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.97 E-value=0.00013 Score=84.34 Aligned_cols=183 Identities=17% Similarity=0.072 Sum_probs=97.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhcccc---ceEEEEEeCCc---CCHHHHHHHH---------------HHhc
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHF---NTFIWVEASYE---DDLKELQIKI---------------ARKI 157 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F---~~~~wv~~s~~---~~~~~~~~~i---------------~~~l 157 (824)
....+.|+|++|+||||+|+.+++.... ...+ ...-|+.+... .+...+...+ +...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~--~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~ 251 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKK--LKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAET 251 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhh--ccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHc
Confidence 3467999999999999999999987643 1222 12345554321 1222221111 1111
Q ss_pred ccccC--------C-----CcchhhhHHHHHHHHHHHHcCCeEEEEEeCCCcc--cccchhcCCCC--CCCcEEEE--Ec
Q 048180 158 DFVLS--------S-----DESVRDNAILLENALQTLLETGKILLILDNMRKA--FSLEEIGIPTL--SNSLRIII--TS 218 (824)
Q Consensus 158 ~~~~~--------~-----~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~--~~gs~Iiv--TT 218 (824)
+.... . -...+..-...+..+.+.++.+++.++-|+.|.. ..|+.+...+. .+...|++ ||
T Consensus 252 gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 252 GVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred CCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 11000 0 0001122234566777777899999998777654 34666643222 23334444 56
Q ss_pred CChhhh-hcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 048180 219 PSSSLC-RQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKH 286 (824)
Q Consensus 219 r~~~v~-~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~ 286 (824)
++.... ..+ .....+.+.+++.+|.+.++.+.+...+...+ .++.+.|.+++..-+-|+..++..
T Consensus 332 ~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 332 RDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred ccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 643321 111 11235678999999999999987654321111 234444555554445566555444
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00026 Score=76.85 Aligned_cols=194 Identities=13% Similarity=0.126 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+..|-+++++.+...... ..-...+-++|+.|+||||+|+.+.+..... .... ..++......++
T Consensus 17 ~iiGq~~~~~~l~~~~~~------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~--~~~~-------~~pc~~c~~c~~ 81 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSL------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ--NGIT-------SNPCRKCIICKE 81 (363)
T ss_pred hccChHHHHHHHHHHHHc------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCC--CCCC-------CCCCCCCHHHHH
Confidence 344555555554443321 1224567899999999999999999876321 0000 011111111112
Q ss_pred HHHhcccccC---C-CcchhhhHHHHHHHHHHH-HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCC-hh
Q 048180 153 IARKIDFVLS---S-DESVRDNAILLENALQTL-LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPS-SS 222 (824)
Q Consensus 153 i~~~l~~~~~---~-~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~-~~ 222 (824)
+......+.. . .....+....+.+.+... ..+++-++|+|+++... .++.+. +.......++|++|.+ ..
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 2111100000 0 000011111222221100 12455699999998765 344442 1122234566665544 33
Q ss_pred hhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 223 LCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 223 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
+.... .....+++.+++.++..+.+...+...+... -++..+.|++.++|.|..+....
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 33221 2235789999999999888877664433111 12456778899999886544433
No 78
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=4.9e-06 Score=96.37 Aligned_cols=147 Identities=28% Similarity=0.370 Sum_probs=99.6
Q ss_pred CCccEEEeccCCCc--CCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEE
Q 048180 446 GDVERVSLMGNNLR--ELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVL 521 (824)
Q Consensus 446 ~~~~~L~l~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 521 (824)
.++++|++.+...- ..+. ...+|.|++|.+.|-.....--.....+|++|+.||+|+++++.+ ..|++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 36788888775321 1111 567899999999986433221123357899999999999999888 789999999999
Q ss_pred ecccccccccCC---CcccCCCccEEeccCCCCcccCcc-------cccCCCCcEEeccCcccc-ccchhhhcCCCCCcE
Q 048180 522 LLQNCIYLTCLP---SLAELVELMVLDVSGSGIAEFPDG-------MNHLTKLLFLNLSRTRVR-NFPLHLVTSLHNLQE 590 (824)
Q Consensus 522 ~L~~c~~~~~lp---~i~~L~~L~~L~l~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~~-~~~~~~l~~L~~L~~ 590 (824)
.+++ -.+..-+ .+.+|++|++||+|...-..-+.- -..|++||.|+++++.+. .+-...+..-++|+.
T Consensus 201 ~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9987 3344333 478999999999998754433321 134889999999987762 222222344455555
Q ss_pred EEee
Q 048180 591 FSMI 594 (824)
Q Consensus 591 L~l~ 594 (824)
+.+.
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 4433
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00014 Score=81.11 Aligned_cols=196 Identities=14% Similarity=0.107 Sum_probs=99.4
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccce-EEEEEeCCcCCHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNT-FIWVEASYEDDLKELQ 150 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~ 150 (824)
.+.+|-+..+..+...... ..-...+-++|+.|+||||+|+.+++..... ..... ..+ ..+..-.-.
T Consensus 21 ~dliGq~~vv~~L~~ai~~------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~--~~~~~~~~~----~~C~~C~~C 88 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILN------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCS--ALITENTTI----KTCEQCTNC 88 (507)
T ss_pred HHhcCcHHHHHHHHHHHHc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCc--cccccCcCc----CCCCCChHH
Confidence 3445555555544332211 1223577899999999999999999876321 00000 000 001111111
Q ss_pred HHHHHhcccccCC-CcchhhhHHHHHHHHHH----HHcCCeEEEEEeCCCccc--ccchhcC--CCCCCCcEEE-EEcCC
Q 048180 151 IKIARKIDFVLSS-DESVRDNAILLENALQT----LLETGKILLILDNMRKAF--SLEEIGI--PTLSNSLRII-ITSPS 220 (824)
Q Consensus 151 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~--~~~~l~~--~~~~~gs~Ii-vTTr~ 220 (824)
..|......+... ........+.+++.+.. -..+++-++|+|+++... .++.+.- ........+| +||+.
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 1111110000000 00001112222222211 123677799999998753 4555521 1222344544 56665
Q ss_pred hhhhhccc-cccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 221 SSLCRQMK-CRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 221 ~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
..+..... ....+++.+++.++....+.+.+...+.... .+....|++.++|.+.-+..
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 55544322 2357899999999999999888765442111 23456688899997754433
No 80
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.95 E-value=6.7e-05 Score=70.00 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+.+.|+|.+|+||||+|+.+++..... -..++++...+..........+... ......
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 77 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP----GAPFLYLNASDLLEGLVVAELFGHF----------------LVRLLF 77 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC----CCCeEEEehhhhhhhhHHHHHhhhh----------------hHhHHH
Confidence 34688899999999999999999986421 1235666554433322221111100 000001
Q ss_pred HHHHcCCeEEEEEeCCCccc-----ccchh-cCCCC----CCCcEEEEEcCChh
Q 048180 179 QTLLETGKILLILDNMRKAF-----SLEEI-GIPTL----SNSLRIIITSPSSS 222 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~-----~~~~l-~~~~~----~~gs~IivTTr~~~ 222 (824)
......+..+||+||++... .+... ..... ..+..||+||....
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 11123567899999998641 12111 11111 24568888887643
No 81
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=9.6e-05 Score=82.06 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=100.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.-+.|+|..|+|||+|++++.+..... ... ..++++ +..++...+...++... .......+.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~-~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~-- 204 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN-FSD-LKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEI-- 204 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh-CCC-CeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHh--
Confidence 458899999999999999999976542 111 123333 34567777776654210 1112222222
Q ss_pred HHcCCeEEEEEeCCCccc---ccc-hhc---CCCCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHHHH
Q 048180 181 LLETGKILLILDNMRKAF---SLE-EIG---IPTLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEEAY 244 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~---~~~-~l~---~~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~~ 244 (824)
.+.-+||+||+.... .+. .+. -.....|..||+|+... .+.+.+...-+..+++++.++-.
T Consensus 205 ---~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 205 ---CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred ---ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 245588999996542 222 221 11123455788886542 23334444557789999999999
Q ss_pred HHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 048180 245 LLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKH 286 (824)
Q Consensus 245 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~ 286 (824)
+++.+++-..+. ...--+++..-|++.++|.|-.+..+-..
T Consensus 282 ~iL~~~~~~~gl-~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 282 AIIKKEIKNQNI-KQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHhcCC-CCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 999998854331 01223467788999999999777655533
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=1.9e-05 Score=84.25 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=75.3
Q ss_pred HhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccc
Q 048180 615 EDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCN 694 (824)
Q Consensus 615 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 694 (824)
..+..++++..|+++.|.+..+|... .+|+.|.+..+.. +..+| ...|++|++|.+.+|.
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~LP-----~sLtsL~Lsnc~n------------LtsLP---~~LP~nLe~L~Ls~Cs 105 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPVLP-----NELTEITIENCNN------------LTTLP---GSIPEGLEKLTVCHCP 105 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCCCC-----CCCcEEEccCCCC------------cccCC---chhhhhhhheEccCcc
Confidence 34555677888888877777665322 3466665542210 11111 2235678888888776
Q ss_pred cceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCc
Q 048180 695 AVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLP 774 (824)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~ 774 (824)
.+..+ + ++|+.|.+.+ ..+..+.. -.++|+.|.+.++....... . ...-.++|++|.+.+|.
T Consensus 106 ~L~sL--P--~sLe~L~L~~-n~~~~L~~-----LPssLk~L~I~~~n~~~~~~------l--p~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 106 EISGL--P--ESVRSLEIKG-SATDSIKN-----VPNGLTSLSINSYNPENQAR------I--DNLISPSLKTLSLTGCS 167 (426)
T ss_pred ccccc--c--cccceEEeCC-CCCccccc-----CcchHhheeccccccccccc------c--ccccCCcccEEEecCCC
Confidence 55432 2 4577777653 33332211 02356677664332111000 0 00112579999999887
Q ss_pred chhccccCcccCCCccEEEecCC
Q 048180 775 ELRFMYSGEAQCDFVQTIGIWSC 797 (824)
Q Consensus 775 ~L~~~~~~~~~lpsL~~L~i~~C 797 (824)
.+. +|..+. ++|+.|.++.+
T Consensus 168 ~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 168 NII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccc-Cccccc--ccCcEEEeccc
Confidence 553 443322 58889988764
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=1.5e-06 Score=96.42 Aligned_cols=130 Identities=29% Similarity=0.358 Sum_probs=104.3
Q ss_pred CCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCC-cccCCCccEEeccCCCCcccCcccccCCCCcEEec
Q 048180 491 SFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPS-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNL 569 (824)
Q Consensus 491 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 569 (824)
.+..+..+++..+.+.+.-..++.+.+|.+|++.+| .+..+.. +..+++|++|++++|.|+.+. ++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 455666677888888775566889999999999984 6778887 999999999999999999884 6788888999999
Q ss_pred cCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHh--hhcCCCccEEEEEecCccchh
Q 048180 570 SRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIED--VRKLRNLNVFDFTFVSLQSFK 637 (824)
Q Consensus 570 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~~~~ 637 (824)
.+|.+..+.. +..+.+|+.+++++|.+..+ +. +..+.+|+.+.+..|.+....
T Consensus 148 ~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~i-------------e~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 148 SGNLISDISG--LESLKSLKLLDLSYNRIVDI-------------ENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred ccCcchhccC--CccchhhhcccCCcchhhhh-------------hhhhhhhccchHHHhccCCchhccc
Confidence 9999988854 67799999999999864432 23 577788888888888766543
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.91 E-value=7.1e-05 Score=87.26 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=81.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
+.+.-+-++|++|+||||+|+.+++.... +| +.++... ...+ .++++ ....+
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~----~f-----~~lna~~~~i~d-ir~~i-----------------~~a~~ 102 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRA----HF-----SSLNAVLAGVKD-LRAEV-----------------DRAKE 102 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcC----cc-----eeehhhhhhhHH-HHHHH-----------------HHHHH
Confidence 34566789999999999999999987533 23 1111100 0000 01111 11111
Q ss_pred HHHHHHcCCeEEEEEeCCCcc--cccchhcCCCCCCCcEEEE--EcCChh--hhh-ccccccccccCCCChHHHHHHHHH
Q 048180 177 ALQTLLETGKILLILDNMRKA--FSLEEIGIPTLSNSLRIII--TSPSSS--LCR-QMKCRERFALNLLTDEEAYLLLIN 249 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~gs~Iiv--TTr~~~--v~~-~~~~~~~~~l~~L~~~~~~~Lf~~ 249 (824)
.+. ..+++.+|||||++.. .+++.+ ++....|+.++| ||.+.. +.. .......+.+++++.++...++.+
T Consensus 103 ~l~--~~~~~~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 103 RLE--RHGKRTILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred Hhh--hcCCceEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHH
Confidence 111 1156789999999754 344444 333345665555 344421 111 111235789999999999999887
Q ss_pred HhcCc----CCCCchhHHHHHHHHHHHhCCChH
Q 048180 250 EVGLA----GKVLEGEIEFGLKNIAKKCGGLPL 278 (824)
Q Consensus 250 ~~~~~----~~~~~~~~~~~~~~i~~~c~GlPl 278 (824)
.+-.. +.....--++....|++.+.|.--
T Consensus 180 ~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 180 ALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 66411 000111123455677888877643
No 85
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00053 Score=78.30 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+.+|-+.+++.|...... ..-...+-++|..|+||||+|+.+.+..... ..+ .+..+..-...+.
T Consensus 17 EVIGQe~Vv~~L~~aL~~------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe--~~~-------~~~PCG~C~sCr~ 81 (830)
T PRK07003 17 SLVGQEHVVRALTHALDG------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCE--TGV-------TSQPCGVCRACRE 81 (830)
T ss_pred HHcCcHHHHHHHHHHHhc------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCc--cCC-------CCCCCcccHHHHH
Confidence 444555566555544422 1223456699999999999999998875321 111 0112222222223
Q ss_pred HHHhcccccCC-CcchhhhHHHHHHHHHHH----HcCCeEEEEEeCCCcccc--cchhcCC--CCCCCcEEEEEcCCh-h
Q 048180 153 IARKIDFVLSS-DESVRDNAILLENALQTL----LETGKILLILDNMRKAFS--LEEIGIP--TLSNSLRIIITSPSS-S 222 (824)
Q Consensus 153 i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~--~~~l~~~--~~~~gs~IivTTr~~-~ 222 (824)
|...-..+... +.......+.+++.+... ..++.-++|||+++.... ++.+.-. ......++|+||++. .
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 22210000000 000011122233222211 124556889999987743 5554211 122456777666653 3
Q ss_pred hhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh-HHHHHHHH
Q 048180 223 LCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP-LAIITFAK 285 (824)
Q Consensus 223 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~g~ 285 (824)
+... ......|.++.++.++..+.+.+.+...+... -.+..+.|++.++|.. -|+..+-.
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3222 12235799999999999999888765443211 2345577889998865 45544333
No 86
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=6.4e-07 Score=98.37 Aligned_cols=126 Identities=24% Similarity=0.199 Sum_probs=87.3
Q ss_pred CcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCcc
Q 048180 495 LKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTR 573 (824)
Q Consensus 495 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 573 (824)
|.+.+.++|.+..+-.++.-+++|+.|+|++|. ++....+..|++|++|||++|.+..+|.- ...+ +|+.|.+++|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH
Confidence 444555566665555667777888888888853 44444677888888888888888877763 2233 38888888887
Q ss_pred ccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 574 VRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 574 ~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
++.+. + +.+|++|+.|+++.|-+.+. ..+..|..|..|+.|.+.+|.+-
T Consensus 244 l~tL~-g-ie~LksL~~LDlsyNll~~h----------seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 LTTLR-G-IENLKSLYGLDLSYNLLSEH----------SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhh-h-HHhhhhhhccchhHhhhhcc----------hhhhHHHHHHHHHHHhhcCCccc
Confidence 77663 2 77888888888887754432 23556677777888888877664
No 87
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=3.7e-06 Score=85.29 Aligned_cols=172 Identities=23% Similarity=0.255 Sum_probs=88.1
Q ss_pred CCCccEEEeccCCCcC-----CCC-ccCCCCccEEEcCCC---CCcccCChh------hhcCCCCCcEEEecCCCCc-c-
Q 048180 445 SGDVERVSLMGNNLRE-----LRT-CPMFCKLTTLFLQGN---PLDLQLDND------FFNSFPNLKILNLSDTSMG-I- 507 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~---~~~~~~~~~------~~~~l~~Lr~L~L~~~~~~-~- 507 (824)
...+..+.+++|.+.. +.. +...+.|+..+++.- .....+|+. .+..+++|++|+||+|.+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4578889999886542 111 455567777776643 112233332 1346778999999998762 2
Q ss_pred ---ccccccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccch---
Q 048180 508 ---LPKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPL--- 579 (824)
Q Consensus 508 ---lp~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~--- 579 (824)
+-.-|.++..|+.|.|.+|. +.... . +++ -|..|. .-..+.+-++||.+....|...+.+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA--------VNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH--------HHhccCCCcceEEEEeeccccccccHHHH
Confidence 22344567778888887763 22111 1 211 000000 00112334456666665555533221
Q ss_pred -hhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 580 -HLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 580 -~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
..+...+.|+.+.+..|.+.. ++.......+..+++|+.|++..|-++
T Consensus 178 A~~~~~~~~leevr~~qN~I~~-------eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRP-------EGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHHHHhccccceEEEecccccC-------chhHHHHHHHHhCCcceeeecccchhh
Confidence 224455566666666554322 111233455666666666666665544
No 88
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.81 E-value=6.1e-05 Score=73.59 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+++.++++..... . ......+.+.|+|.+|+|||+|.++++.....
T Consensus 2 fvgR~~e~~~l~~~l~-~---~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A---AQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G---TSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H---HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456666666665552 1 12455699999999999999999999998866
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00016 Score=84.09 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=60.0
Q ss_pred cCCeEEEEEeCCCccc--ccchhcC--CCCCCCcEEEE-EcCChhhhhc-cccccccccCCCChHHHHHHHHHHhcCcCC
Q 048180 183 ETGKILLILDNMRKAF--SLEEIGI--PTLSNSLRIII-TSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGK 256 (824)
Q Consensus 183 ~~kr~LlVlDdv~~~~--~~~~l~~--~~~~~gs~Iiv-TTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 256 (824)
.+++-++|+|+++... ..+.+.- -......++|+ ||....+... ......|++++|+.++..+.+.+.+-..+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 3777899999998663 4444421 11223445555 4444444322 122368999999999999888776543221
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 257 VLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 257 ~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
..-.+..+.|++.++|.|.-+..+
T Consensus 197 ---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 197 ---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112345677999999988654444
No 90
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=7.5e-07 Score=97.84 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=87.6
Q ss_pred hcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCC--cccCCCccEEeccCCCCcccCcccccCCCCcE
Q 048180 489 FNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPS--LAELVELMVLDVSGSGIAEFPDGMNHLTKLLF 566 (824)
Q Consensus 489 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~--i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 566 (824)
+.-++.|+.|+|+.|.+.+.- .+..|.+|++|||++| .++.+|. ...+. |+.|.+++|.++.+ .++.+|++|++
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhc
Confidence 455788999999999998775 7899999999999994 6888884 33444 99999999999988 58999999999
Q ss_pred EeccCccccccch-hhhcCCCCCcEEEeecCcc
Q 048180 567 LNLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 567 L~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l 598 (824)
|+++.|-+.+... ..++.|..|..|++.+|.+
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999998744321 2267888999999999974
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00023 Score=80.01 Aligned_cols=197 Identities=11% Similarity=0.046 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhcc-ccceEEEEEeCCcCCHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRS-HFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~ 151 (824)
+.+|-+.+++.|...... ..-...+-++|..|+||||+|+.+.+.....-.. ... ..++.+......+
T Consensus 17 dVIGQe~vv~~L~~al~~------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-----~~~~PCG~C~sC~ 85 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQ------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-----ITAQPCGQCRACT 85 (700)
T ss_pred HHcCcHHHHHHHHHHHHh------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-----CCCCCCcccHHHH
Confidence 444545555555444322 1223566889999999999999999876321000 000 0001111122222
Q ss_pred HHHHhcccccCC-CcchhhhHHHHHHHHHHH----HcCCeEEEEEeCCCccc--ccchhcCCC--CCCCcE-EEEEcCCh
Q 048180 152 KIARKIDFVLSS-DESVRDNAILLENALQTL----LETGKILLILDNMRKAF--SLEEIGIPT--LSNSLR-IIITSPSS 221 (824)
Q Consensus 152 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~~--~~~gs~-IivTTr~~ 221 (824)
.|...-..+... +.......+++++.+... ..++.-++|+|+++... .++.+.-.+ ...+.+ |++||...
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 222110000000 000011122333322221 23666799999998763 344442111 223444 55566555
Q ss_pred hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 222 SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 222 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.+...+ .....|.++.++.++..+.+.+.+...+.... .+..+.|++.++|.|.-...+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 554332 22358999999999999888877654332111 234577899999998655444
No 92
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00033 Score=79.01 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+.+|-+.+++.|...... ..-...+-++|+.|+||||+|+.+++..... -|+. ...++.-...+.
T Consensus 16 dVIGQe~vv~~L~~aI~~------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~--------~~~~-~~pCg~C~sC~~ 80 (702)
T PRK14960 16 ELVGQNHVSRALSSALER------GRLHHAYLFTGTRGVGKTTIARILAKCLNCE--------TGVT-STPCEVCATCKA 80 (702)
T ss_pred HhcCcHHHHHHHHHHHHc------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC--------cCCC-CCCCccCHHHHH
Confidence 444545555555444422 1224677899999999999999998875321 1111 111121222222
Q ss_pred HHHhcccccCC-CcchhhhHHHHHHHHHH----HHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCC-hh
Q 048180 153 IARKIDFVLSS-DESVRDNAILLENALQT----LLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPS-SS 222 (824)
Q Consensus 153 i~~~l~~~~~~-~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~-~~ 222 (824)
|...-..+... ........+.+++.+.. -..+++-++|+|+|+... ..+.+. +-....+.++|++|.+ ..
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 22111000000 00001112222222211 123667789999998663 333331 1112244566666654 22
Q ss_pred hhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 223 LCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 223 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
+... ......+++++++.++..+.+.+.+...+. ..-.+....|++.++|-+..+..+
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3211 122358899999999998888877654432 112234567888999977555443
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0018 Score=64.44 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=86.0
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
.+.+--|-++|++|.||||||.-+++...+. +-++..... +...++..
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--------~k~tsGp~l------------------------eK~gDlaa 96 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIANELGVN--------LKITSGPAL------------------------EKPGDLAA 96 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--------eEecccccc------------------------cChhhHHH
Confidence 4567889999999999999999999997653 111111100 00111111
Q ss_pred HHHHHHcCCeEEEEEeCCCcccc---------cchhcCC--C-CCCCcEEE-----------EEcCChhhhhcccc--cc
Q 048180 177 ALQTLLETGKILLILDNMRKAFS---------LEEIGIP--T-LSNSLRII-----------ITSPSSSLCRQMKC--RE 231 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~~~---------~~~l~~~--~-~~~gs~Ii-----------vTTr~~~v~~~~~~--~~ 231 (824)
.|.. | .+.=.+.+|.++...- .+.+.+. . .++++|.| -|||.-.+.+-... ..
T Consensus 97 iLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi 174 (332)
T COG2255 97 ILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI 174 (332)
T ss_pred HHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCC
Confidence 1111 1 2334556677654321 1111111 1 12233333 58987666543322 23
Q ss_pred ccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 048180 232 RFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKH 286 (824)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~ 286 (824)
+.+++.-+.+|-.++..+.+..-+. +--++.+.+|+++..|-|.-+.-+-+.
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 6678888889988888887743221 222356789999999999654444333
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00021 Score=78.27 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=98.6
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCc-eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGA-VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQ 150 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 150 (824)
.+.+|-+.++..|..... .+++ ..+-++|+.|+||||+|+.+++..... ..-.. ..++...-.
T Consensus 18 ~dvVGQe~iv~~L~~~i~-------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce--~~~~~-------~pCg~C~sC 81 (484)
T PRK14956 18 RDVIHQDLAIGALQNALK-------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCE--NPIGN-------EPCNECTSC 81 (484)
T ss_pred HHHhChHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc--cccCc-------cccCCCcHH
Confidence 345555555555544442 2233 457899999999999999998875321 00000 000100111
Q ss_pred HHHHHhcccccCC----CcchhhhHHHHHHHHHHH-HcCCeEEEEEeCCCccc--ccchhcCCCCC--CCcEE-EEEcCC
Q 048180 151 IKIARKIDFVLSS----DESVRDNAILLENALQTL-LETGKILLILDNMRKAF--SLEEIGIPTLS--NSLRI-IITSPS 220 (824)
Q Consensus 151 ~~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~~~~~~--~gs~I-ivTTr~ 220 (824)
..+......+... .....+.+..+.+.+... ..++.-++|+|+++... .++.+.-.... ....+ +.||..
T Consensus 82 ~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~ 161 (484)
T PRK14956 82 LEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEF 161 (484)
T ss_pred HHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCCh
Confidence 2222221111000 000111223333333211 23566799999998663 45555222221 23344 455554
Q ss_pred hhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 221 SSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 221 ~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
..+.... .....|.+.+++.++..+.+.+.+...+. .--.+....|++.++|.+.-+
T Consensus 162 ~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 162 HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHH
Confidence 5553322 22357999999999988888777654332 112345678999999988543
No 95
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00065 Score=76.32 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=91.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc---C-CCcchhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL---S-SDESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~-~~~~~~~~~~~l~ 175 (824)
...+-++|++|+||||+|+.+++.... .+.+...+|+|.+. ..+........ . ......+....+.
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c--~~~~~~~cg~C~sc--------~~i~~~~h~dv~el~~~~~~~vd~iR~l~ 105 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC--SGEDPKPCGECESC--------LAVRRGAHPDVLEIDAASNNSVEDVRDLR 105 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc--cCCCCCCCCcChhh--------HHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 356789999999999999999988643 12222234433211 11111000000 0 0000111122233
Q ss_pred HHHHH-HHcCCeEEEEEeCCCccc--ccchhcCC--CCCCCcEEEE-EcCChhhhhcc-ccccccccCCCChHHHHHHHH
Q 048180 176 NALQT-LLETGKILLILDNMRKAF--SLEEIGIP--TLSNSLRIII-TSPSSSLCRQM-KCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 176 ~~l~~-~l~~kr~LlVlDdv~~~~--~~~~l~~~--~~~~gs~Iiv-TTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
+.+.. -..+++-++|+|+++... .++.+.-. .......+|+ |++...+.... .....+++.+++.++..+.+.
T Consensus 106 ~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~ 185 (504)
T PRK14963 106 EKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLR 185 (504)
T ss_pred HHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHH
Confidence 32221 123566799999998653 34444211 1223344444 44444443222 223578999999999999998
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCChHHHH
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAII 281 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 281 (824)
+.+-..+... -.+....|++.++|.+--+.
T Consensus 186 ~i~~~egi~i---~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 186 RLLEAEGREA---EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 8776544212 23456789999999885443
No 96
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.76 E-value=0.0012 Score=73.10 Aligned_cols=181 Identities=17% Similarity=0.113 Sum_probs=100.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
...+.|+|..|+|||+||+++++....+ ..=..+++++ ..++..++...+... ....+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~--~~~~~v~yi~------~~~~~~~~~~~~~~~---------~~~~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN--NPNAKVVYVS------SEKFTNDFVNALRNN---------KMEEFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh--CCCCcEEEEE------HHHHHHHHHHHHHcC---------CHHHHHHHHH
Confidence 3568899999999999999999987542 1011345553 334444555444311 1122333332
Q ss_pred HHHcCCeEEEEEeCCCcccc---cc-hhc--C-CCCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHHH
Q 048180 180 TLLETGKILLILDNMRKAFS---LE-EIG--I-PTLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEEA 243 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~---~~-~l~--~-~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~ 243 (824)
+ .-+|||||++.... +. .+. + .....|..||+|+... .+.+.+....++++++.+.++-
T Consensus 199 ----~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 199 ----S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred ----h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 2 34889999975421 11 111 0 1112455677777642 1223333344688999999999
Q ss_pred HHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH----HHHHH-hhhcCCChHHHHHHHHHH
Q 048180 244 YLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT----FAKHH-LKFIGFDFISWKRALMSE 305 (824)
Q Consensus 244 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~----~g~~l-~~~~~~~~~~w~~~~~~~ 305 (824)
..++.+.+...+...+ +++...|++.+.|.+-.+.- +..+- .....-+.+..++++...
T Consensus 274 ~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 274 LAILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 9999888765432122 35567778888876654332 22211 101223556666666654
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.75 E-value=0.00018 Score=78.42 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=82.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-+.++|++|+|||++|+++++.... .| +.+.. ..+..... + .....+...+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~----~~-----~~v~~----~~l~~~~~---g----------~~~~~i~~~f 208 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNA----TF-----IRVVG----SELVRKYI---G----------EGARLVREIF 208 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCC----CE-----Eecch----HHHHHHhh---h----------HHHHHHHHHH
Confidence 3456889999999999999999987533 12 22211 11111111 0 0111222222
Q ss_pred HHHHcCCeEEEEEeCCCccc----------------ccchhc--CC-CC-CCCcEEEEEcCChhh-----hhcccccccc
Q 048180 179 QTLLETGKILLILDNMRKAF----------------SLEEIG--IP-TL-SNSLRIIITSPSSSL-----CRQMKCRERF 233 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~----------------~~~~l~--~~-~~-~~gs~IivTTr~~~v-----~~~~~~~~~~ 233 (824)
+..-.....+|++||++... .+..+. .. .. ..+.+||.||..... .+.......+
T Consensus 209 ~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i 288 (364)
T TIGR01242 209 ELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRII 288 (364)
T ss_pred HHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEE
Confidence 22223466899999987541 011110 11 11 234578888875332 2111224578
Q ss_pred ccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 234 ALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
++...+.++..++|..++.......... -..+++.+.|..
T Consensus 289 ~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 289 EVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 8999999999999998876543211122 245667777764
No 98
>PLN03025 replication factor C subunit; Provisional
Probab=97.75 E-value=0.00067 Score=72.41 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=83.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccce-EEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNT-FIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
+.+-+-++|++|+||||+|+.+++..... .|.. .+-+..++..+.. .++++++........
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~---~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~~-------------- 94 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELLGP---NYKEAVLELNASDDRGID-VVRNKIKMFAQKKVT-------------- 94 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhcc---cCccceeeecccccccHH-HHHHHHHHHHhcccc--------------
Confidence 34456789999999999999999886331 1221 1111222222211 222222211100000
Q ss_pred HHHHHcCCeEEEEEeCCCcccc--cchhc--CCCCCCCcEEEEEcCCh-hhhhcc-ccccccccCCCChHHHHHHHHHHh
Q 048180 178 LQTLLETGKILLILDNMRKAFS--LEEIG--IPTLSNSLRIIITSPSS-SLCRQM-KCRERFALNLLTDEEAYLLLINEV 251 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (824)
.-.++.-++|+|+++.... .+.+. .......+++|++|... .+.... .....+++++++.++....+...+
T Consensus 95 ---~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 95 ---LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred ---CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHH
Confidence 0014567899999987642 22221 11223445676666432 221111 112478999999999998888877
Q ss_pred cCcCCCCchhHHHHHHHHHHHhCCChHH
Q 048180 252 GLAGKVLEGEIEFGLKNIAKKCGGLPLA 279 (824)
Q Consensus 252 ~~~~~~~~~~~~~~~~~i~~~c~GlPla 279 (824)
-..+...+ .+....|++.++|-.-.
T Consensus 172 ~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 172 EAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 54442122 23567788888886543
No 99
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.3e-05 Score=54.83 Aligned_cols=40 Identities=30% Similarity=0.475 Sum_probs=27.0
Q ss_pred CCccEEeccCCCCcccCcccccCCCCcEEeccCccccccc
Q 048180 539 VELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFP 578 (824)
Q Consensus 539 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 578 (824)
++|++|++++|+|+.+|..+++|++|+.|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777766654
No 100
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=6.6e-06 Score=81.39 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=16.7
Q ss_pred CCCCcEEeccCccc--cccchhhhcCCCCCcEEEeecCc
Q 048180 561 LTKLLFLNLSRTRV--RNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 561 L~~L~~L~l~~~~~--~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
+.+|+.|-+.++.+ ... ...+..++.++.|+++.|+
T Consensus 120 ~~nl~~lVLNgT~L~w~~~-~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQS-TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccceEEEEEcCCCCChhhh-hhhhhcchhhhhhhhccch
Confidence 34555555555443 111 1224455555556555543
No 101
>PF14516 AAA_35: AAA-like domain
Probab=97.72 E-value=0.0068 Score=64.86 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=103.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-----CCHHHHHHHHHHhcccccCCCcch-------
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-----DDLKELQIKIARKIDFVLSSDESV------- 167 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~~~l~~~~~~~~~~------- 167 (824)
-..+.|.|+-.+|||||...+.+....+ .+ .++++.+... .+...+++.++..+.....-....
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~---~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~ 106 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQ---GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEE 106 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHC---CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHh
Confidence 3689999999999999999999887642 23 4557766542 245555555544443222111100
Q ss_pred hhhHHHHHHHHHHHH-c--CCeEEEEEeCCCcccc--------cchhc------CCCCCCCc-E-EEEE-cCChhhhhc-
Q 048180 168 RDNAILLENALQTLL-E--TGKILLILDNMRKAFS--------LEEIG------IPTLSNSL-R-IIIT-SPSSSLCRQ- 226 (824)
Q Consensus 168 ~~~~~~l~~~l~~~l-~--~kr~LlVlDdv~~~~~--------~~~l~------~~~~~~gs-~-IivT-Tr~~~v~~~- 226 (824)
......+...+.+++ + +++.+|++|+|+.... +..++ .......+ + |++. |+.......
T Consensus 107 ~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~ 186 (331)
T PF14516_consen 107 IGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDIN 186 (331)
T ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCC
Confidence 001123334444432 1 6899999999975532 11111 10111122 2 2222 222111111
Q ss_pred ---cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 048180 227 ---MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHL 288 (824)
Q Consensus 227 ---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~ 288 (824)
+.....++|.+++.+|...|...+-..- .+ ...++|...+||+|.-+..++..+.
T Consensus 187 ~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~---~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 187 QSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQ---EQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred CCCcccccceeCCCCCHHHHHHHHHhhhccC----CH---HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2223478899999999999988764321 11 1278899999999999999999987
No 102
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.71 E-value=0.00076 Score=72.95 Aligned_cols=175 Identities=19% Similarity=0.141 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccc-eEEEEEeCCcCCH-HHHHH---HHHHhcccccCCCcchhhhHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFN-TFIWVEASYEDDL-KELQI---KIARKIDFVLSSDESVRDNAIL 173 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~-~~~~~---~i~~~l~~~~~~~~~~~~~~~~ 173 (824)
..+.+-++|+.|+||||+|+.+.+..... .+. ..+.+.+++..+. ...+. .....++.... ........
T Consensus 35 ~~~~lll~Gp~GtGKT~la~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 108 (337)
T PRK12402 35 NLPHLLVQGPPGSGKTAAVRALARELYGD---PWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKR---IRSSKIDN 108 (337)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCc---ccccceEEechhhhhhcchhhhhcCcchhhhhhhhhh---hccchHHH
Confidence 34567899999999999999999876431 122 1233333221100 00000 00000000000 00001122
Q ss_pred HHHHHHHHH-----cCCeEEEEEeCCCcccc--cchhc--CCCCCCCcEEEEEcCCh-hhhhcc-ccccccccCCCChHH
Q 048180 174 LENALQTLL-----ETGKILLILDNMRKAFS--LEEIG--IPTLSNSLRIIITSPSS-SLCRQM-KCRERFALNLLTDEE 242 (824)
Q Consensus 174 l~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~ 242 (824)
+++.++... .+.+-+||+||++.... .+.+. +......+++|+||... .+.... .....+++.+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~ 188 (337)
T PRK12402 109 FKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDE 188 (337)
T ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHH
Confidence 222222111 13445899999976532 22221 11122345777776442 222211 122467889999999
Q ss_pred HHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 243 AYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 243 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
....+.+.+...+... -.+..+.+++.++|.+-.+..
T Consensus 189 ~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 189 LVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 8888888765443212 234567788889887655443
No 103
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00015 Score=77.37 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=49.9
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCC-CCccccccccCcccccEEecc
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDT-SMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~~~~lp~~i~~l~~L~~L~L~ 524 (824)
...++|.+.++.+..+|.++ ++|++|.+.+|.....+|..+ .+.|++|++++| .+..+|.+ |+.|++.
T Consensus 52 ~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEeC
Confidence 35678888888777776422 358888888876666666533 357888888888 57777754 4444444
Q ss_pred c--ccccccCC
Q 048180 525 N--CIYLTCLP 533 (824)
Q Consensus 525 ~--c~~~~~lp 533 (824)
+ |..+..+|
T Consensus 121 ~n~~~~L~~LP 131 (426)
T PRK15386 121 GSATDSIKNVP 131 (426)
T ss_pred CCCCcccccCc
Confidence 3 33355555
No 104
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00077 Score=75.89 Aligned_cols=182 Identities=13% Similarity=0.109 Sum_probs=94.9
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhc-----------------cccceE
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYR-----------------SHFNTF 135 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~~F~~~ 135 (824)
+..|-+..+..+...... ..-...+-++|+.|+||||+|+.+++....... +.|...
T Consensus 17 diiGq~~~v~~L~~~i~~------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 17 EVAGQQHALNSLVHALET------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HhcCcHHHHHHHHHHHHc------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344445555554443321 122355778999999999999999986532100 011122
Q ss_pred EEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH-HHcCCeEEEEEeCCCccc--ccchhcC--CCCCC
Q 048180 136 IWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT-LLETGKILLILDNMRKAF--SLEEIGI--PTLSN 210 (824)
Q Consensus 136 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~--~~~~l~~--~~~~~ 210 (824)
+++.......+. ....+.+.+.. -..+++-++|+|+++... .++.+.- -.+..
T Consensus 91 ieidaas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 91 IEIDAASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred EEeecccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 222211111111 11222222221 123677799999998653 3444421 11223
Q ss_pred CcEEE-EEcCChhhhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChH-HHHHHHH
Q 048180 211 SLRII-ITSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPL-AIITFAK 285 (824)
Q Consensus 211 gs~Ii-vTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~g~ 285 (824)
...+| +||....+... ......+++++++.++..+.+.+.+-..+. ..-++....|++.++|-+- |+..+-.
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44444 56654444422 222368899999999988777765543321 1123345678889998664 4444433
No 105
>PTZ00202 tuzin; Provisional
Probab=97.62 E-value=0.0013 Score=69.96 Aligned_cols=159 Identities=12% Similarity=0.068 Sum_probs=89.3
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
.++|+++....+..-+.+.+ ....+++.|+|++|+|||||++.+..... ..+++.-.. +..++++.
T Consensus 263 ~FVGReaEla~Lr~VL~~~d----~~~privvLtG~~G~GKTTLlR~~~~~l~--------~~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLD----TAHPRIVVFTGFRGCGKSSLCRSAVRKEG--------MPAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCcHHHHHHHHHHHhccC----CCCceEEEEECCCCCCHHHHHHHHHhcCC--------ceEEEECCC--CHHHHHHH
Confidence 34555555544433332211 22356999999999999999999986532 123333333 77999999
Q ss_pred HHHhcccccCCCcchhhhHHHHHHHHHHHH-c-CCeEEEEEeCCCcccccch-----hcCCCCCCCcEEEEEcCChhhhh
Q 048180 153 IARKIDFVLSSDESVRDNAILLENALQTLL-E-TGKILLILDNMRKAFSLEE-----IGIPTLSNSLRIIITSPSSSLCR 225 (824)
Q Consensus 153 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~-----l~~~~~~~gs~IivTTr~~~v~~ 225 (824)
++.+||... .....+....+.+.+.+.- . |++.+||+-= .+-..+.. +.+.....-|.|++---.+.+.-
T Consensus 329 LL~ALGV~p--~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 329 VVKALGVPN--VEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHcCCCC--cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence 999999632 2233455566666665443 3 6778887742 11111111 12222233455554333322211
Q ss_pred c---cccccccccCCCChHHHHHHHH
Q 048180 226 Q---MKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 226 ~---~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
. ...-..|-+..++.++|.....
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHh
Confidence 1 1112467888899888876543
No 106
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00066 Score=75.40 Aligned_cols=153 Identities=13% Similarity=0.120 Sum_probs=89.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccc-eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFN-TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..-+.|+|..|+|||+||+++++..... +.. .++|++. .++..++...+... ......+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~---~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN---EPDLRVMYITS------EKFLNDLVDSMKEG---------KLNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh---CCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHHHHHHH
Confidence 3458999999999999999999987542 122 3455543 45566665554311 112222222
Q ss_pred HHHHcCCeEEEEEeCCCccc---cc-chhc---CCCCCCCcEEEEEcC-Chh--------hhhccccccccccCCCChHH
Q 048180 179 QTLLETGKILLILDNMRKAF---SL-EEIG---IPTLSNSLRIIITSP-SSS--------LCRQMKCRERFALNLLTDEE 242 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~---~~-~~l~---~~~~~~gs~IivTTr-~~~--------v~~~~~~~~~~~l~~L~~~~ 242 (824)
+.+.-+||+||+.... .+ +.+. ......|..||+||. ... +.+.+....+.++++.+.+.
T Consensus 192 ----~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 192 ----RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred ----HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 2455689999997431 11 1111 111224557888875 221 12233334577899999999
Q ss_pred HHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 243 AYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 243 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
-..++.+.+...+...+ +++..-|++.+.|.-
T Consensus 268 r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 268 RKKIARKMLEIEHGELP---EEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHHHHHhcCCCCC---HHHHHHHHhccccCH
Confidence 99999888754322122 345667777777654
No 107
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.61 E-value=0.0019 Score=70.39 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=59.1
Q ss_pred CCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChh-hhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSS-LCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++-++|+|+++... ..+.+. +........+|++|.+.. +.... .....+++.+++.++..+.+...+-..+..
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 455688999987552 233331 122223456666654433 22221 223467888999999888888766544321
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAIITFAKH 286 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai~~~g~~ 286 (824)
.+ ++....+++.++|.|..+......
T Consensus 196 i~---~~a~~~l~~~~~g~~~~a~~~lek 221 (355)
T TIGR02397 196 IE---DEALELIARAADGSLRDALSLLDQ 221 (355)
T ss_pred CC---HHHHHHHHHHcCCChHHHHHHHHH
Confidence 22 356677889999998766555443
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0012 Score=72.62 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=90.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEE-eCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVE-ASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENAL 178 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l 178 (824)
..+-++|+.|+||||+|+.+.+..... .......|.. ...++..-...+.+......+... ........+.+++..
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~--~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~ 116 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ--RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLR 116 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC--CCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHH
Confidence 457789999999999999999876431 1111111111 112222222333333221111100 000111123333221
Q ss_pred HHHH-----cCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEE-EcCChhhhhcc-ccccccccCCCChHHHHHHH
Q 048180 179 QTLL-----ETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIII-TSPSSSLCRQM-KCRERFALNLLTDEEAYLLL 247 (824)
Q Consensus 179 ~~~l-----~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~Iiv-TTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf 247 (824)
+.+ .+++-++|+|+++... .++.+. +......+.+|+ |++...+.... .....+++.++++++..+.+
T Consensus 117 -~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l 195 (397)
T PRK14955 117 -ENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQL 195 (397)
T ss_pred -HHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 122 2556688999997654 455442 122223455554 55544444322 12347889999999988877
Q ss_pred HHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 248 INEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
...+-..+. .--.+.+..|++.++|.+--+..
T Consensus 196 ~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 196 QGICEAEGI---SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 766543221 11234567899999997754433
No 109
>PRK06620 hypothetical protein; Validated
Probab=97.61 E-value=0.00031 Score=69.90 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=73.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+.+.|+|+.|+|||+|++.+++.... .++. ..+. . . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~---------~~~~--~~~~---------------------~----~---~~~-- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA---------YIIK--DIFF---------------------N----E---EIL-- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC---------EEcc--hhhh---------------------c----h---hHH--
Confidence 67899999999999999987665311 1111 0000 0 0 001
Q ss_pred HHcCCeEEEEEeCCCcccccc--hhcCCCCCCCcEEEEEcCChh-------hhhccccccccccCCCChHHHHHHHHHHh
Q 048180 181 LLETGKILLILDNMRKAFSLE--EIGIPTLSNSLRIIITSPSSS-------LCRQMKCRERFALNLLTDEEAYLLLINEV 251 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~~~~--~l~~~~~~~gs~IivTTr~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (824)
+..-++++||++...+.. .+.-.....|..||+|++... ..+++....+++++++++++-..+..+.+
T Consensus 84 ---~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 ---EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred ---hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 233578899997432211 110111245778999887532 23334444578999999988877777765
Q ss_pred cCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 252 GLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 252 ~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
...+-..+ +++.+-|++.+.|--
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREY 183 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCH
Confidence 43221111 344556666665543
No 110
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.60 E-value=0.0011 Score=74.43 Aligned_cols=181 Identities=16% Similarity=0.088 Sum_probs=102.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
..-+.|+|..|+|||+||+++++....+ ..-..+++++. .++..++...+... ....+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEK--NPNAKVVYVTS------EKFTNDFVNALRNN---------TMEEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEEEH------HHHHHHHHHHHHcC---------cHHHHHHHHh
Confidence 3568899999999999999999987543 11113445543 33344444443210 1122333332
Q ss_pred HHHcCCeEEEEEeCCCccc---cc-chhc---CCCCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHHH
Q 048180 180 TLLETGKILLILDNMRKAF---SL-EEIG---IPTLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEEA 243 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~---~~-~~l~---~~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~ 243 (824)
+--+||+||++... .+ +.+. ......|..||+||... .+.+.+....++++++.+.++-
T Consensus 211 -----~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 211 -----SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred -----cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 34589999996431 11 1121 11122455678877653 1233444445789999999999
Q ss_pred HHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHH----HHHHHHh-hhcCCChHHHHHHHHHH
Q 048180 244 YLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAII----TFAKHHL-KFIGFDFISWKRALMSE 305 (824)
Q Consensus 244 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~----~~g~~l~-~~~~~~~~~w~~~~~~~ 305 (824)
..++.+.+...+...+ +++..-|++.+.|-.-.+. .+..+-. ....-+....+.++..+
T Consensus 286 ~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 286 IAILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9999998764322122 3456778888887765432 2222211 01224667777777765
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0011 Score=73.82 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=57.5
Q ss_pred CCeEEEEEeCCCccc--ccchhcCCC-CCCC-cEEEE-EcCChhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEIGIPT-LSNS-LRIII-TSPSSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l~~~~-~~~g-s~Iiv-TTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++-++|+|+++... ..+.+.-.. ..++ ..+|+ ||....+.... .....+++.+++.++....+.+.+...+..
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 567799999997552 333331111 1123 34444 44323333222 223578899999999888888776543321
Q ss_pred CchhHHHHHHHHHHHhCC-ChHHHHHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGG-LPLAIITFAKHH 287 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~G-lPlai~~~g~~l 287 (824)
.+ .+....|++.++| ++.|+..+-.+.
T Consensus 196 i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 196 ID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22 2445678887754 567776665543
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.57 E-value=0.00065 Score=68.79 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+.+.|+|..|+|||+||+.+++..... + . ..++++..+.. .. + .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~--~-~-~~~~i~~~~~~------~~----~------------------~--- 86 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG--G-R-NARYLDAASPL------LA----F------------------D--- 86 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--C-C-cEEEEehHHhH------HH----H------------------h---
Confidence 4678899999999999999999975331 1 1 23444432211 00 0 0
Q ss_pred HHHcCCeEEEEEeCCCcccccc--hhcCC---CCCCCc-EEEEEcCChhhhh--------ccccccccccCCCChHHHHH
Q 048180 180 TLLETGKILLILDNMRKAFSLE--EIGIP---TLSNSL-RIIITSPSSSLCR--------QMKCRERFALNLLTDEEAYL 245 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~~~--~l~~~---~~~~gs-~IivTTr~~~v~~--------~~~~~~~~~l~~L~~~~~~~ 245 (824)
.. .+.-+||+||+.....+. .+... ....+. .||+|++...... .+.....+++.++++++-..
T Consensus 87 -~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~ 164 (227)
T PRK08903 87 -FD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIA 164 (227)
T ss_pred -hc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHH
Confidence 00 233478999997654322 12111 112344 4666666433221 22223578899999887666
Q ss_pred HHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 048180 246 LLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHL 288 (824)
Q Consensus 246 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~ 288 (824)
++.+.+-..+-..+ ++....+++.+.|.+..+..+-..+.
T Consensus 165 ~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 165 ALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 66554322221122 24556677778888877766665543
No 113
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=4.1e-05 Score=88.84 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=76.7
Q ss_pred CCccEEEcCCCCCc-ccCChhhhcCCCCCcEEEecCCCC--ccccccccCcccccEEecccccccccCCCcccCCCccEE
Q 048180 468 CKLTTLFLQGNPLD-LQLDNDFFNSFPNLKILNLSDTSM--GILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVL 544 (824)
Q Consensus 468 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~--~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L 544 (824)
.+|++|+++|.... ...|..+...+|.|+.|.+++-.+ ..+-.-..++++|+.||+++ +.++.+-.+++|+|||+|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHH
Confidence 46777888776433 233444445677888888777664 22223345677777777777 456666557777777777
Q ss_pred eccCCCCcccC--cccccCCCCcEEeccCccccccch------hhhcCCCCCcEEEeecCc
Q 048180 545 DVSGSGIAEFP--DGMNHLTKLLFLNLSRTRVRNFPL------HLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 545 ~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~------~~l~~L~~L~~L~l~~~~ 597 (824)
.+++-.++.-+ ..+.+|++|++||++.......+. +.-..|++|+.|+.+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 77766555332 245677777777777654422221 111245666666666543
No 114
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0024 Score=68.47 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=102.0
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
.+..|-++....+...... ..-...+-|+|+.|+||||+|+.+.+..-..-...+... .....+......+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYRE------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhccCcHHHHHHHHHHHHc------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3444545555555444321 122456889999999999999999987643100001111 1111111222334
Q ss_pred HHHHhccc-------ccCCCc---chhhhHHHHH---HHHHH-HHcCCeEEEEEeCCCcccc--cchhc--CCCCCCCc-
Q 048180 152 KIARKIDF-------VLSSDE---SVRDNAILLE---NALQT-LLETGKILLILDNMRKAFS--LEEIG--IPTLSNSL- 212 (824)
Q Consensus 152 ~i~~~l~~-------~~~~~~---~~~~~~~~l~---~~l~~-~l~~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs- 212 (824)
.|...-.. ...... ......++++ +.+.. -..+++-++|+|+++.... .+.+. +..+..+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 44332110 000000 1111233333 33221 1135677999999987642 33331 11122233
Q ss_pred EEEEEcCChhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 213 RIIITSPSSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 213 ~IivTTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
-|++|++-..+.... .....+++.+++.++..+.+.+..... . .-.+....|++.++|.|..+..+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455665544443222 122589999999999999988743211 1 113345788999999998665544
No 115
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.55 E-value=0.0016 Score=66.49 Aligned_cols=176 Identities=16% Similarity=0.084 Sum_probs=103.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccc--cceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSH--FNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
...+-+.|||.+|+|||++++++.+..-..+... --.++.|.+....+...+...|+.+++...............+.
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~ 138 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVL 138 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHH
Confidence 4556689999999999999999998654431111 11567788889999999999999999987665444443333333
Q ss_pred HHHHHHHcCCeEEEEEeCCCcccc---------cchhcCCCCC-CCcEEEEEcCC--------hhhhhccccccccccCC
Q 048180 176 NALQTLLETGKILLILDNMRKAFS---------LEEIGIPTLS-NSLRIIITSPS--------SSLCRQMKCRERFALNL 237 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv~~~~~---------~~~l~~~~~~-~gs~IivTTr~--------~~v~~~~~~~~~~~l~~ 237 (824)
..++ .-+-=+||+|.+.+.-. .+.++.-.+. .-+-|.|-|+. .+.++.+ .++.+..
T Consensus 139 ~llr---~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF---~~~~Lp~ 212 (302)
T PF05621_consen 139 RLLR---RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRF---EPFELPR 212 (302)
T ss_pred HHHH---HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhcc---CCccCCC
Confidence 3333 12445889999976421 2222211111 12244444433 3334332 3556666
Q ss_pred CChHH-HHHHHHHHh--cCcCCCCchhHHHHHHHHHHHhCCChHH
Q 048180 238 LTDEE-AYLLLINEV--GLAGKVLEGEIEFGLKNIAKKCGGLPLA 279 (824)
Q Consensus 238 L~~~~-~~~Lf~~~~--~~~~~~~~~~~~~~~~~i~~~c~GlPla 279 (824)
...++ ...|+.... ..-.....-..+++++.|...++|+.=-
T Consensus 213 W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 213 WELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 66544 344432221 1111112233467899999999998633
No 116
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0014 Score=74.77 Aligned_cols=177 Identities=12% Similarity=0.082 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l 178 (824)
...+-++|..|+||||+|+.+.+..-..-....... ....++.....+.|...-..+... ........+.+++.+
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~----~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli 113 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI----TATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLL 113 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC----CCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHH
Confidence 356789999999999999999876532100000000 001222222333332111000000 000111223333332
Q ss_pred HHH----HcCCeEEEEEeCCCccc--ccchhcCCC--CCCCcEEE-EEcCChhhhhc-cccccccccCCCChHHHHHHHH
Q 048180 179 QTL----LETGKILLILDNMRKAF--SLEEIGIPT--LSNSLRII-ITSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 179 ~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~~--~~~gs~Ii-vTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
... ..++.-++|+|+|+... .++.+.-.. .....++| +||....+... ......+++++++.++..+.+.
T Consensus 114 ~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~ 193 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLT 193 (618)
T ss_pred HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHH
Confidence 211 12455689999998763 344442111 22344555 45444444322 2223689999999999988888
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
+.+...+...+ .+....|++.++|.+.-+..+
T Consensus 194 ~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 194 QVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 77654432111 245677888999977555443
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=7.8e-05 Score=52.93 Aligned_cols=33 Identities=42% Similarity=0.512 Sum_probs=19.8
Q ss_pred CCcEEEecCCCCccccccccCcccccEEecccc
Q 048180 494 NLKILNLSDTSMGILPKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 494 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c 526 (824)
+|++|++++|.++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 566666666666666665666666666666664
No 118
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0029 Score=68.16 Aligned_cols=197 Identities=12% Similarity=0.021 Sum_probs=98.1
Q ss_pred chhHHHHHHHHHHhhhhccccccccCC-ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccce-EEEEEeCCcCCHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQG-AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNT-FIWVEASYEDDLKELQ 150 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~ 150 (824)
+..|-++..+.+.+... .++ ...+-++|+.|+||||+|..+.+..-.+-...... .+=.............
T Consensus 20 ~iiGq~~~~~~L~~~~~-------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 20 ALFGHAAAEAALLDAYR-------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hccChHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 34454555555544432 223 34688999999999999999998764320000010 0000000000001122
Q ss_pred HHHHHhccccc-------CCCc---chhhhHHHHHHHHHHHH-----cCCeEEEEEeCCCccc--ccchhc--CCCCCCC
Q 048180 151 IKIARKIDFVL-------SSDE---SVRDNAILLENALQTLL-----ETGKILLILDNMRKAF--SLEEIG--IPTLSNS 211 (824)
Q Consensus 151 ~~i~~~l~~~~-------~~~~---~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~g 211 (824)
+.|...-..+. .... .....++++++.. +.+ .+++-++|+||++..+ ..+.+. +.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~-~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELI-SFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHH-HHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 22221111000 0000 0112234443322 222 2566799999998664 233331 1122245
Q ss_pred cEEEEEcCCh-hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 212 LRIIITSPSS-SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 212 s~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
..+|++|.+. .+.... .....+.+.+++.++..+.+....... .. .....++..++|.|+.+..+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----PD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----CH---HHHHHHHHHcCCCHHHHHHHh
Confidence 5555555543 333222 223588999999999999988764221 11 112578899999998665543
No 119
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0014 Score=72.81 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=87.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENALQ 179 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~ 179 (824)
..+-++|+.|+||||+|+.+++..-.. ... -..+++.-...+.|......+... +.......+.+++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~--~~~-------~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie 106 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCS--NGP-------TSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILE 106 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCc--CCC-------CCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHH
Confidence 478899999999999999998754211 000 001112222222222211110000 0000111122222111
Q ss_pred HH----HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEE-EEcCChhhhhcc-ccccccccCCCChHHHHHHHHH
Q 048180 180 TL----LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRII-ITSPSSSLCRQM-KCRERFALNLLTDEEAYLLLIN 249 (824)
Q Consensus 180 ~~----l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~Ii-vTTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 249 (824)
.. ..+++-++|+|+++... ..+.+. +.......++| +||..+.+.... .....+++++++.++..+.+.+
T Consensus 107 ~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ 186 (491)
T PRK14964 107 NSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVD 186 (491)
T ss_pred HHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHH
Confidence 10 12566689999997653 234331 11222345555 455545554332 2235789999999999888888
Q ss_pred HhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 250 EVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
.+...+... -++..+.|++.++|.+..+..
T Consensus 187 ia~~Egi~i---~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 187 IAKKENIEH---DEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 776543211 123456788899888754433
No 120
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.00082 Score=75.78 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=98.6
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+..|-+.+++.+...... ..-.+.+-++|+.|+||||+|+.+.+.... .-|... ..++.....+.
T Consensus 17 dIIGQe~iv~~L~~aI~~------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C--------~~~~~~-~~Cg~C~sCr~ 81 (605)
T PRK05896 17 QIIGQELIKKILVNAILN------NKLTHAYIFSGPRGIGKTSIAKIFAKAINC--------LNPKDG-DCCNSCSVCES 81 (605)
T ss_pred HhcCcHHHHHHHHHHHHc------CCCCceEEEECCCCCCHHHHHHHHHHHhcC--------CCCCCC-CCCcccHHHHH
Confidence 344545555555444322 122356889999999999999999987532 112221 12222333333
Q ss_pred HHHhcccccC--C-C-cchhhhHHHHHHHHHHH-HcCCeEEEEEeCCCcc--cccchhcC--CCCCCCcEEE-EEcCChh
Q 048180 153 IARKIDFVLS--S-D-ESVRDNAILLENALQTL-LETGKILLILDNMRKA--FSLEEIGI--PTLSNSLRII-ITSPSSS 222 (824)
Q Consensus 153 i~~~l~~~~~--~-~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~--~~~~~gs~Ii-vTTr~~~ 222 (824)
+......+.. . . ...-+..+.+.+.+... ..+++=++|+|+++.. ..++.+.- ..+.....+| +||....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 3222111000 0 0 00011112222222110 1234446999999765 34444421 1122344444 4544444
Q ss_pred hhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChH-HHHHHHH
Q 048180 223 LCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPL-AIITFAK 285 (824)
Q Consensus 223 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~g~ 285 (824)
+... ......+++.+++.++....+...+...+...+ .+.+..+++.++|-+. |+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4322 222357899999999998888876654332122 2346778999999664 4444333
No 121
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.52 E-value=0.0011 Score=64.84 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCCh-hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSS-SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+.+-++|+||++... .++.+. +......+.+|++|++. .+.... .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 566789999997653 344331 11222345565555543 332221 12358899999999988887776 1
Q ss_pred CchhHHHHHHHHHHHhCCChHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLA 279 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPla 279 (824)
.+ ++.+..|++.++|.|..
T Consensus 169 i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC---HHHHHHHHHHcCCCccc
Confidence 11 34578899999998853
No 122
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.51 E-value=0.00038 Score=75.35 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=41.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
+.|.++|++|+|||++|+.+++.... ...|+.+.||++++.++..+++.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~--~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTG--EKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcC--CcccceeeEEeecccccHHHHhc
Confidence 57778999999999999999998754 35688899999999988777664
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.0019 Score=72.90 Aligned_cols=152 Identities=14% Similarity=0.026 Sum_probs=88.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
..+.|+|..|.|||.|++++++..... ..-..+++++ ..++..++...+... ....+.++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~--~~g~~V~Yit------aeef~~el~~al~~~---------~~~~f~~~y~- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL--YPGTRVRYVS------SEEFTNEFINSIRDG---------KGDSFRRRYR- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEee------HHHHHHHHHHHHHhc---------cHHHHHHHhh-
Confidence 458999999999999999999987542 0011344544 344454554433210 1122233332
Q ss_pred HHcCCeEEEEEeCCCcc---cccchhcC----CCCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHHHH
Q 048180 181 LLETGKILLILDNMRKA---FSLEEIGI----PTLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEEAY 244 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~---~~~~~l~~----~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~~ 244 (824)
+-=+|||||+... ..|....+ .....|..|||||+.. .+.+.+...-+++++..+.+.-.
T Consensus 377 ----~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 377 ----EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred ----cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 2357899999654 22322111 1123456788888752 23444555568899999999999
Q ss_pred HHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 245 LLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 245 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
.++.+++...+-..+ +++..-|++.+.+..
T Consensus 453 aIL~kka~~r~l~l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 453 AILRKKAVQEQLNAP---PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHhccCCH
Confidence 999988765432122 344555666655443
No 124
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=5.8e-05 Score=71.98 Aligned_cols=36 Identities=17% Similarity=0.412 Sum_probs=29.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEE
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIW 137 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~w 137 (824)
+.|.|+|++|+||||||+.+++..... .-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~-~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP-VHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC-ceecchhhc
Confidence 358999999999999999999987542 244777776
No 125
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=3.5e-05 Score=76.42 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=53.8
Q ss_pred cCCCCCcEEEecCCCCcccc---ccccCcccccEEecccccccccCCCc-ccCCCccEEeccCCCCc--ccCcccccCCC
Q 048180 490 NSFPNLKILNLSDTSMGILP---KSLSSLKYLTVLLLQNCIYLTCLPSL-AELVELMVLDVSGSGIA--EFPDGMNHLTK 563 (824)
Q Consensus 490 ~~l~~Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~c~~~~~lp~i-~~L~~L~~L~l~~~~l~--~lp~~i~~L~~ 563 (824)
..+.+++.|||.+|.|.... ..+.++++|++|+|+.|..-..+-+. -.+.+|++|-|.++.+. .....+..+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45667777777777764433 23467777777777765432222222 34567888888877543 55556677888
Q ss_pred CcEEeccCccc
Q 048180 564 LLFLNLSRTRV 574 (824)
Q Consensus 564 L~~L~l~~~~~ 574 (824)
++.|+++.|+.
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 88887777754
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0015 Score=74.19 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=93.5
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+.+|-+.+++.+...... ..-...+-++|+.|+||||+|+.+.+..... .. +. ..++........
T Consensus 17 divGq~~v~~~L~~~i~~------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~------~~-~~pcg~C~~C~~ 81 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQ------QRLHHAYLFTGTRGVGKTTLARILAKSLNCE--TG------VT-ATPCGVCSACLE 81 (527)
T ss_pred HhcCcHHHHHHHHHHHHc------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCC--CC------CC-CCCCCCCHHHHH
Confidence 344545555555444322 1223456799999999999999998875321 00 00 011111111111
Q ss_pred HHHhcccccCC-CcchhhhHHHHHHHHHHH----HcCCeEEEEEeCCCcccc--cchhc--CCCCCCCcEEEE-EcCChh
Q 048180 153 IARKIDFVLSS-DESVRDNAILLENALQTL----LETGKILLILDNMRKAFS--LEEIG--IPTLSNSLRIII-TSPSSS 222 (824)
Q Consensus 153 i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs~Iiv-TTr~~~ 222 (824)
|...-..+... ........+.+++.+... ..+++-++|+|+++.... .+.+. +........+|+ ||....
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 11100000000 000011122222221111 135677999999986643 33331 111223445554 544443
Q ss_pred hhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 223 LCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 223 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
+... ......+++++++.++..+.+.+.+...+. . .-++....|++.++|.+--+..+
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~-~~~~al~~la~~s~Gslr~al~l 220 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--P-FDATALQLLARAAAGSMRDALSL 220 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 112357899999999988887776643331 1 11234577888999977543333
No 127
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0012 Score=74.46 Aligned_cols=194 Identities=13% Similarity=0.060 Sum_probs=95.4
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
.+.+|-+.+++.|......+ .-...+-++|+.|+||||+|+.+.+..-.. ..+. ..+++.-...+
T Consensus 16 ~divGq~~v~~~L~~~~~~~------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~-------~~pCg~C~~C~ 80 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ------YLHHAYLFTGTRGVGKTTISRILAKCLNCE--KGVS-------ANPCNDCENCR 80 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC------CCCeeEEEECCCCCCHHHHHHHHHHHhcCC--CCCC-------cccCCCCHHHH
Confidence 34555556666555554321 123456799999999999999999876321 1110 01111112222
Q ss_pred HHHHhcccccCC-CcchhhhHHHHHHHHHH----HHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEE-EcCCh
Q 048180 152 KIARKIDFVLSS-DESVRDNAILLENALQT----LLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIII-TSPSS 221 (824)
Q Consensus 152 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~Iiv-TTr~~ 221 (824)
.|...-..+... ........+.+++.+.. -..++.-++|+|+|+... ..+.+. +.......++|+ ||...
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred HHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 221110000000 00001112222222211 113566789999998653 344331 111223455554 55444
Q ss_pred hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 222 SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 222 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.+.... .....+++++++.++....+.+.+-..+.... .+....|++.++|-+.-+..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 443221 22357889999998877766655543332111 234567888888887544443
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.0018 Score=71.80 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=84.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
..-+.|+|+.|+|||+||+++++..... ...+++++ ...+...+...+... .... ++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~----~~~v~yi~------~~~f~~~~~~~l~~~---------~~~~----f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES----GGKILYVR------SELFTEHLVSAIRSG---------EMQR----FR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEee------HHHHHHHHHHHHhcc---------hHHH----HH
Confidence 3568899999999999999999987542 12344443 234444555444210 0111 22
Q ss_pred HHHcCCeEEEEEeCCCcccc--c-c-hhcCC---CCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHHH
Q 048180 180 TLLETGKILLILDNMRKAFS--L-E-EIGIP---TLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEEA 243 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~--~-~-~l~~~---~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~ 243 (824)
..+ .+.-+|++||+..... + . .+... ....|..||+||... .+.+.+....++.+.+++.++-
T Consensus 198 ~~~-~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 198 QFY-RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred HHc-ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 222 3445888999865422 1 1 11111 112456788887542 2233344446788999999999
Q ss_pred HHHHHHHhcCcCCCCchhHHHHHHHHHHHhCC
Q 048180 244 YLLLINEVGLAGKVLEGEIEFGLKNIAKKCGG 275 (824)
Q Consensus 244 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 275 (824)
..++.+++-..+...+ +++..-|+..+.|
T Consensus 277 ~~iL~~k~~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 277 RSFLERKAEALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHhcCC
Confidence 9999888754432122 2334445555543
No 129
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.46 E-value=0.0039 Score=66.81 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEe--CCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEA--SYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
..+.+-++|..|.||||+|+.+.+..... .+.. .++.+ +...... ...+.+.++.....
T Consensus 37 ~~~~~ll~G~~G~GKt~~~~~l~~~l~~~---~~~~-~~i~~~~~~~~~~~-~~~~~i~~~~~~~~-------------- 97 (319)
T PRK00440 37 NMPHLLFAGPPGTGKTTAALALARELYGE---DWRE-NFLELNASDERGID-VIRNKIKEFARTAP-------------- 97 (319)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcCC---cccc-ceEEeccccccchH-HHHHHHHHHHhcCC--------------
Confidence 34557999999999999999999886431 1211 12222 2211111 11111111110000
Q ss_pred HHHHHHcCCeEEEEEeCCCcccc--cchhc--CCCCCCCcEEEEEcCC-hhhhhc-cccccccccCCCChHHHHHHHHHH
Q 048180 177 ALQTLLETGKILLILDNMRKAFS--LEEIG--IPTLSNSLRIIITSPS-SSLCRQ-MKCRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs~IivTTr~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
.-...+-+||+|+++.... .+.+. .......+++|+++.. ..+... ......+++.+++.++....+...
T Consensus 98 ----~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~ 173 (319)
T PRK00440 98 ----VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYI 173 (319)
T ss_pred ----CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHH
Confidence 0012356899999875532 22221 1122234566666543 222111 112236789999999988888877
Q ss_pred hcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 251 VGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
+...+...+ ++....+++.++|.+.-+..
T Consensus 174 ~~~~~~~i~---~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 174 AENEGIEIT---DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 754432122 34567788899998765433
No 130
>PRK08116 hypothetical protein; Validated
Probab=97.41 E-value=0.0005 Score=70.94 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=57.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.-+.++|..|+|||.||.++++....+ -..+++++ ..+++..+........ ......+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~----~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~~~~~l-- 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK----GVPVIFVN------FPQLLNRIKSTYKSSG------KEDENEIIRSL-- 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEE------HHHHHHHHHHHHhccc------cccHHHHHHHh--
Confidence 458899999999999999999997652 23455554 4455666655432111 11112223333
Q ss_pred HHcCCeEEEEEeCCC--cccccch--hc--C-CCCCCCcEEEEEcCC
Q 048180 181 LLETGKILLILDNMR--KAFSLEE--IG--I-PTLSNSLRIIITSPS 220 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~--~~~~~~~--l~--~-~~~~~gs~IivTTr~ 220 (824)
.+- =||||||+. ...+|.. +. + .....|..+||||..
T Consensus 177 --~~~-dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 --VNA-DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred --cCC-CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 233 389999994 3344532 10 0 011245678898864
No 131
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0041 Score=67.62 Aligned_cols=92 Identities=10% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCeEEEEEeCCCccc--ccchh-c-CCCCCCCcEEEEEcCC-hhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEI-G-IPTLSNSLRIIITSPS-SSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l-~-~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++-++|+|+++... ..+.+ + +-.+..+..+|++|.+ ..+.... .....+.+.+++.++..+.+.....
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----
Confidence 455588889998763 23333 1 1122345555554444 4444322 2235889999999999888764321
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.+ .+.+..++..++|.|.....+
T Consensus 191 ~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 234677899999999765444
No 132
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0022 Score=73.16 Aligned_cols=194 Identities=10% Similarity=0.085 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
.+.+|-+.+++.|...... ..-...+-++|+.|+||||+|+.+.+..... ... . ...+......+
T Consensus 16 ddIIGQe~vv~~L~~ai~~------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~--~~~------~-~~pCg~C~sCr 80 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE------GRLHHAYLLTGTRGVGKTTIARILAKSLNCE--NAQ------H-GEPCGVCQSCT 80 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc------CCCCeEEEEECCCCCcHHHHHHHHHHHhccc--CCC------C-CCCCcccHHHH
Confidence 3455555666655554422 1223568899999999999999998864321 100 0 01111111111
Q ss_pred HHHHhcccccCC-CcchhhhHHHHHHHHHH----HHcCCeEEEEEeCCCcccc--cchhc--CCCCCCCcEEEEEcCC-h
Q 048180 152 KIARKIDFVLSS-DESVRDNAILLENALQT----LLETGKILLILDNMRKAFS--LEEIG--IPTLSNSLRIIITSPS-S 221 (824)
Q Consensus 152 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs~IivTTr~-~ 221 (824)
.|...-..+... ........+.+++.+.. -..+++-++|+|+++.... .+.+. +.......++|++|.+ .
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 111100000000 00001111222222211 1126677899999976542 22221 1112234456655543 3
Q ss_pred hhhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 222 SLCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 222 ~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.+... ......|.+.+++.++....+.+.+-..+... -.+....|++.++|.+.-+..+
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHH
Confidence 33221 12224688899999999888887765443211 2245678999999988554443
No 133
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0012 Score=75.65 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=90.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc---CCC-cchhhhHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL---SSD-ESVRDNAILLEN 176 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~~~-~~~~~~~~~l~~ 176 (824)
..+-++|..|+||||+|+.+++..-.. . ++ ....+......+.|...-..+. ... ....+....+.+
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~--~------~~-~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~ 109 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCE--T------GI-TATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLD 109 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhc--c------CC-CCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHH
Confidence 446799999999999999998875431 0 00 0112222233333322110000 000 001111222222
Q ss_pred HHHH-HHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEE-EEcCChhhhhc-cccccccccCCCChHHHHHHHHH
Q 048180 177 ALQT-LLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRII-ITSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLIN 249 (824)
Q Consensus 177 ~l~~-~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~Ii-vTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~ 249 (824)
.+.. -..+++-++|+|+++... ..+.+. +-.+....++| +||....+... ......|.+++++.++....+.+
T Consensus 110 ~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEH 189 (647)
T ss_pred HHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHH
Confidence 2211 124677799999998663 344441 11122344444 45554444322 22236899999999999988887
Q ss_pred HhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 250 EVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
.+-..+. . .-.+....|++.++|.+--+..+.
T Consensus 190 il~~e~i--~-~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 190 ILQAEQI--P-FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHHcCC--C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6533221 1 112345678999999886444443
No 134
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0043 Score=71.23 Aligned_cols=178 Identities=14% Similarity=0.074 Sum_probs=89.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEE-eCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVE-ASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENAL 178 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l 178 (824)
..+-++|+.|+||||+|+.+.+..-.. ..++...|-. +...++.-...+.+...-..+... +.......+.+++..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L~c~--~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~ 116 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ--RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLR 116 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCC--CcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHH
Confidence 457899999999999999998876331 1111111111 112222223333333221111000 000111122333222
Q ss_pred HHH----HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEE-EEEcCChhhhhc-cccccccccCCCChHHHHHHHH
Q 048180 179 QTL----LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRI-IITSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 179 ~~~----l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~I-ivTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
... ..+++-++|+|+++... ..+.+. +......+.+ ++|++...+... ......+++.+++.++....+.
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~ 196 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQ 196 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHH
Confidence 111 23556678999987664 244431 1112233444 455554444332 2234588999999999877776
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLPL-AIITF 283 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 283 (824)
+.+...+... -.+.++.|++.++|-.- |+..+
T Consensus 197 ~i~~~egi~I---~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 197 MICRAEGIQI---DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 6554332111 23456789999999554 44433
No 135
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0035 Score=68.53 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhh----ccccceEE-EEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQY----RSHFNTFI-WVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILL 174 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 174 (824)
.+.+-++|+.|+||||+|+.+.+...... ...|...+ -+........ +-.++++.++..
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~l~~~~~~--------------- 102 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIRNLIDQVRI--------------- 102 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHHHHHHHHhh---------------
Confidence 45788999999999999999987753210 01121111 1110010111 111111111110
Q ss_pred HHHHHHHHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEc-CChhhhhc-cccccccccCCCChHHHHHHHH
Q 048180 175 ENALQTLLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITS-PSSSLCRQ-MKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 175 ~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTT-r~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
.-..+++-++|+|+++... .++.+. +........+|++| ....+... ......++.+++++++....+.
T Consensus 103 -----~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 103 -----PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred -----ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHH
Confidence 0012455689999987553 244431 11122334555444 33333222 1223478899999999888888
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
..+...+...+ .+....+++.++|-+-.+
T Consensus 178 ~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 178 GIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 77654432122 345677888899866533
No 136
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.33 E-value=0.001 Score=68.95 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=86.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccc-ccCCC--cchhhhHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDF-VLSSD--ESVRDNAILLEN 176 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~--~~~~~~~~~l~~ 176 (824)
+..|-|+|-.|.|||.+.+++++.... ..+|+++-+.++...++..|+.+++. +.... +...+.......
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~ 102 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIY 102 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHH
Confidence 455689999999999999999998633 36999999999999999999999852 11111 111122333333
Q ss_pred HHHH--HHc--CCeEEEEEeCCCcccccchhcCC--------CCCCCcEEEEEcCC--hhh-hhcccccc--ccccCCCC
Q 048180 177 ALQT--LLE--TGKILLILDNMRKAFSLEEIGIP--------TLSNSLRIIITSPS--SSL-CRQMKCRE--RFALNLLT 239 (824)
Q Consensus 177 ~l~~--~l~--~kr~LlVlDdv~~~~~~~~l~~~--------~~~~gs~IivTTr~--~~v-~~~~~~~~--~~~l~~L~ 239 (824)
.+.+ ... ++.++||||+++...+.+.+-++ ...+ .-+|+++-. +.. ...+++.. ++....-+
T Consensus 103 ~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys 181 (438)
T KOG2543|consen 103 LLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSCEKQYLINTGTLEIVVLHFPQYS 181 (438)
T ss_pred HHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEeccccHHHhhcccCCCCceEEecCCCC
Confidence 3333 222 45899999999887776654211 1122 223333322 111 12233333 44556667
Q ss_pred hHHHHHHHHH
Q 048180 240 DEEAYLLLIN 249 (824)
Q Consensus 240 ~~~~~~Lf~~ 249 (824)
.++-.+++.+
T Consensus 182 ~~e~~~Il~~ 191 (438)
T KOG2543|consen 182 VEETQVILSR 191 (438)
T ss_pred HHHHHHHHhc
Confidence 7777777654
No 137
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.33 E-value=0.00045 Score=63.07 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=41.5
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTLL 182 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l 182 (824)
|-|+|++|+||||+|+.+++.... ..+.+..+...+ ....+....+...+++.-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~-------------------~~~~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELIS-------------------SYAGDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHT-------------------SSTTHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-------cccccccccccc-------------------cccccccccccccccccc
Confidence 568999999999999999998532 123443322110 011122233444444333
Q ss_pred cCC-eEEEEEeCCCcc
Q 048180 183 ETG-KILLILDNMRKA 197 (824)
Q Consensus 183 ~~k-r~LlVlDdv~~~ 197 (824)
+.. +.+|++||++..
T Consensus 55 ~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 55 KSAKPCVLFIDEIDKL 70 (132)
T ss_dssp HTSTSEEEEEETGGGT
T ss_pred ccccceeeeeccchhc
Confidence 344 899999998754
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.32 E-value=0.0032 Score=65.67 Aligned_cols=130 Identities=11% Similarity=0.055 Sum_probs=68.9
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTL 181 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 181 (824)
-+-++|++|.||||+|+.++...... +.....-|+.++. .++. ..+... .. ..+...+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~--g~~~~~~~v~v~~----~~l~----~~~~g~-----~~----~~~~~~~~~a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL--GYVRKGHLVSVTR----DDLV----GQYIGH-----TA----PKTKEILKRA 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc--CCcccceEEEecH----HHHh----Hhhccc-----ch----HHHHHHHHHc
Confidence 57799999999999999998876431 2222223555542 1222 111110 00 1122223211
Q ss_pred HcCCeEEEEEeCCCcc------ccc-----chhc--CCCCCCCcEEEEEcCChhhhhcc--------ccccccccCCCCh
Q 048180 182 LETGKILLILDNMRKA------FSL-----EEIG--IPTLSNSLRIIITSPSSSLCRQM--------KCRERFALNLLTD 240 (824)
Q Consensus 182 l~~kr~LlVlDdv~~~------~~~-----~~l~--~~~~~~gs~IivTTr~~~v~~~~--------~~~~~~~l~~L~~ 240 (824)
..-+|+||++... ..| +.+. ......+-+||++|.....-... .....+++++++.
T Consensus 121 ---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 121 ---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred ---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 2358899999733 112 2221 11112233666666543221111 1124688999999
Q ss_pred HHHHHHHHHHhcC
Q 048180 241 EEAYLLLINEVGL 253 (824)
Q Consensus 241 ~~~~~Lf~~~~~~ 253 (824)
+|-.+++...+-.
T Consensus 198 edl~~I~~~~l~~ 210 (284)
T TIGR02880 198 AELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877643
No 139
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.30 E-value=0.016 Score=69.79 Aligned_cols=294 Identities=18% Similarity=0.163 Sum_probs=156.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc---CCHHHHHHHHHHhcccccCC-----------
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE---DDLKELQIKIARKIDFVLSS----------- 163 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l~~~~~~----------- 163 (824)
..-.|+.+.|..|||||+++++|......+ ++.|-...+-..... ....+.+++++.++......
T Consensus 22 g~~~~~lv~G~sGIGKsalv~ev~~~i~~~-~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~~ll~~~~~~~~~~~~~il~ 100 (849)
T COG3899 22 GRGEVVLVAGESGIGKSALVNEVHKPITQQ-RGYFIKGKFDQFERNIPLSPLVQAFRDLMGQLLSESDTRILSWRARLLA 100 (849)
T ss_pred CCeEEEEEeecCCCcHHHHHHHHHHHHhcc-ceeeeHhhcccccCCCchHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 345699999999999999999999987654 232211111111111 12344555555554111100
Q ss_pred ----------------------Ccc--------hhhhHH-HHHHHHHHHH-cCCeEEEEEeCCC-ccc-ccchhc-----
Q 048180 164 ----------------------DES--------VRDNAI-LLENALQTLL-ETGKILLILDNMR-KAF-SLEEIG----- 204 (824)
Q Consensus 164 ----------------------~~~--------~~~~~~-~l~~~l~~~l-~~kr~LlVlDdv~-~~~-~~~~l~----- 204 (824)
+.. ...... .....+.... +.|+.++|+||+. -.. ..+.+.
T Consensus 101 ~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~ 180 (849)
T COG3899 101 ALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDR 180 (849)
T ss_pred HhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEecccccChhHHHHHHHHHHh
Confidence 000 000111 1222233333 3568999999994 322 122221
Q ss_pred CCC-CCCCcEEEEEcCChhh---h-hccccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHH
Q 048180 205 IPT-LSNSLRIIITSPSSSL---C-RQMKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLA 279 (824)
Q Consensus 205 ~~~-~~~gs~IivTTr~~~v---~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 279 (824)
.+. .-..+.|..+...... . ........+.|.||+..+...+......... ....+..+.|+++..|.|+=
T Consensus 181 ~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfF 256 (849)
T COG3899 181 IAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----LLPAPLLELIFEKTKGNPFF 256 (849)
T ss_pred cchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----cccchHHHHHHHHhcCCCcc
Confidence 110 0011233332222221 1 1122335899999999999999887765422 33345678899999999999
Q ss_pred HHHHHHHHhhhc----CCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCCCcc
Q 048180 280 IITFAKHHLKFI----GFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHA 355 (824)
Q Consensus 280 i~~~g~~l~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~ 355 (824)
+.-+-..+...+ ..+...|.--..++. ..... +.+...+..-.+.||.. .+...-..|++-..+.
T Consensus 257 i~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~-~~vv~~l~~rl~kL~~~------t~~Vl~~AA~iG~~F~ 325 (849)
T COG3899 257 IEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATT-DAVVEFLAARLQKLPGT------TREVLKAAACIGNRFD 325 (849)
T ss_pred HHHHHHHHHhCCeeEecCCCcceeccHHhcC----Cchhh-HHHHHHHHHHHhcCCHH------HHHHHHHHHHhCccCC
Confidence 988888777310 223334443222111 12222 33666788889999999 9999999999875544
Q ss_pred cchHHHHHHHHHhccccccccchHHHHhhHHHHHHHHHhcCccccc-----ccCcCCc--c-ccchHHHHHHHhh
Q 048180 356 FVAEELMKDWMTEGLLGEEMEGIDERFGKAKEILEELKDASFLVGI-----ISDENEI--V-KMHPLMFDMASKM 422 (824)
Q Consensus 356 i~~~~li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~-----~~~~~~~--~-~mhdl~~dl~~~i 422 (824)
.+-|...|-. .....+....+.|....++ .. ...+... | -.||.+++.|-..
T Consensus 326 --l~~La~l~~~------------~~~~~a~~l~~al~e~lI~-~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 326 --LDTLAALAED------------SPALEAAALLDALQEGLIL-PLSETYRFGSNVDIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred --HHHHHHHHhh------------chHHHHHHHHHHhHhhcee-ccccccccccccchhhHHhhHHHHHHHHhcc
Confidence 4444443311 1223455555555555555 31 1111111 2 3477777776543
No 140
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.28 E-value=0.0021 Score=70.33 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+-|-++|++|.|||++|+++++..... |+.++. .++.... .+ .....++..
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~---------~i~v~~----~~l~~~~---~g----------~~~~~i~~~ 216 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNAT---------FIRVVG----SELVQKF---IG----------EGARLVREL 216 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCC---------EEEeeh----HHHhHhh---cc----------chHHHHHHH
Confidence 345678899999999999999999875321 233221 1121111 00 001122222
Q ss_pred HHHHHcCCeEEEEEeCCCccc------------c-cchhc-----CC-CCC-CCcEEEEEcCChhhhh-c-c---ccccc
Q 048180 178 LQTLLETGKILLILDNMRKAF------------S-LEEIG-----IP-TLS-NSLRIIITSPSSSLCR-Q-M---KCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~------------~-~~~l~-----~~-~~~-~gs~IivTTr~~~v~~-~-~---~~~~~ 232 (824)
+...-.....+|+|||++... . ...+. .. ... .+.+||.||....... . . ..+..
T Consensus 217 f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~ 296 (389)
T PRK03992 217 FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRI 296 (389)
T ss_pred HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceE
Confidence 222223566899999997531 0 11110 11 111 2346777776543221 1 1 12347
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL 276 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 276 (824)
+++...+.++-.++|..++..........+ ..+++.+.|.
T Consensus 297 I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 297 IEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred EEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 889999999999999988764432122222 4466666664
No 141
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0047 Score=70.19 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC----CcchhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS----DESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~ 175 (824)
...+-++|+.|+||||+|+.+.+..-.. . +. ....++.-...+.|......+... ....-+.+..+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~--~------~~-~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~ 108 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE--T------AP-TGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLK 108 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc--C------CC-CCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHH
Confidence 4677789999999999999999875321 0 00 011222222333332221100000 000011112222
Q ss_pred HHHHH-HHcCCeEEEEEeCCCccc--ccchhcCC--CCCCCcEEEE-EcCChhhhhcc-ccccccccCCCChHHHHHHHH
Q 048180 176 NALQT-LLETGKILLILDNMRKAF--SLEEIGIP--TLSNSLRIII-TSPSSSLCRQM-KCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 176 ~~l~~-~l~~kr~LlVlDdv~~~~--~~~~l~~~--~~~~gs~Iiv-TTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
+.+.. -..+++-+||+|+++... .++.+.-. .......+|+ ||....+...+ .....+++++++.++....+.
T Consensus 109 ~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~ 188 (624)
T PRK14959 109 EAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLT 188 (624)
T ss_pred HHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHH
Confidence 22211 123567799999997663 34443111 1223345555 44434443221 223578999999999998888
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCCh-HHHHHHHHHHh
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLP-LAIITFAKHHL 288 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~g~~l~ 288 (824)
..+...+... -.+..+.|++.++|-+ .|+..+...+.
T Consensus 189 ~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 189 KVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7665443212 2345677888999954 67777765543
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0038 Score=72.05 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=95.7
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+.+|-+..++.+...... ..-...+-++|+.|+||||+|+.++...-.. ..... ..++.. ...
T Consensus 19 dIiGQe~~v~~L~~aI~~------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~-~~~~~-------~~pC~~---C~~ 81 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKS------NKISHAYLFSGPRGTGKTSVAKIFANALNCS-HKTDL-------LEPCQE---CIE 81 (725)
T ss_pred HhcCcHHHHHHHHHHHHc------CCCCeEEEEECCCCCcHHHHHHHHHHHhccc-ccCCC-------CCchhH---HHH
Confidence 344545555555444422 1224566789999999999999998765321 00000 000000 000
Q ss_pred HHH-hcc---cccCCCcchhhhHHHHHHHHHHH-HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcE-EEEEcCChh
Q 048180 153 IAR-KID---FVLSSDESVRDNAILLENALQTL-LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLR-IIITSPSSS 222 (824)
Q Consensus 153 i~~-~l~---~~~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~-IivTTr~~~ 222 (824)
... ... ..... ....+.++.+.+.+... ..+++-++|+|+++... .++.+. +-.+..... |++||+...
T Consensus 82 ~~~~~~Dvieidaas-n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 82 NVNNSLDIIEMDAAS-NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred hhcCCCcEEEEeccc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 000 000 00000 00111123333333211 12566689999997653 444442 111223344 455655555
Q ss_pred hhhc-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 223 LCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 223 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
+... ......+++.+++.++....+...+...+.... .+.+..|++.++|-+.-+..+..
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5432 222358899999999988888776543331111 23467789999997754444333
No 143
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.24 E-value=0.00063 Score=67.81 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=28.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEe
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEA 140 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~ 140 (824)
-.++|+|..|.||||+++.+...... .|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~----~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH----KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc----cCCEEEEEec
Confidence 35779999999999999999887644 4877766654
No 144
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0048 Score=70.69 Aligned_cols=200 Identities=13% Similarity=0.076 Sum_probs=99.9
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
.+..|-+..++.|...... ..-...+-++|+.|+||||+|+.+.+..... ...... -.....+..-.-.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~--~~~~~~--~~~~~~cg~c~~C~ 93 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET------GRIAQAFMLTGVRGVGKTTTARILARALNYE--GPDGDG--GPTIDLCGVGEHCQ 93 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc------CCCCceEEEECCCCCCHHHHHHHHHHhhCcC--CccccC--CCccccCcccHHHH
Confidence 3444555555555444321 1223467899999999999999999875321 100000 00000111112222
Q ss_pred HHHHhcccccCC-CcchhhhHHHHHHH---HHH-HHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEE-EEcCCh
Q 048180 152 KIARKIDFVLSS-DESVRDNAILLENA---LQT-LLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRII-ITSPSS 221 (824)
Q Consensus 152 ~i~~~l~~~~~~-~~~~~~~~~~l~~~---l~~-~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~Ii-vTTr~~ 221 (824)
.|...-..+... ........+++++. ++. -..+++-++|+|+++... ..+.+. +-.....+++| +||...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 332221110000 00001112233322 210 012455679999997664 233331 11122345554 455544
Q ss_pred hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 222 SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 222 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
.+...+ .....+++..++.++....+.+.+-..+.... .+....|++.++|-+.-+...-
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 443322 22357899999999998888887654432122 2456778999999886655444
No 145
>CHL00181 cbbX CbbX; Provisional
Probab=97.24 E-value=0.0056 Score=63.86 Aligned_cols=132 Identities=11% Similarity=0.092 Sum_probs=69.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
..+-++|++|.||||+|+.+++..... +.-...-|+.++. .++......+ .. ......+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~--g~~~~~~~~~v~~----~~l~~~~~g~---------~~----~~~~~~l~~ 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKL--GYIKKGHLLTVTR----DDLVGQYIGH---------TA----PKTKEVLKK 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCCCCCceEEecH----HHHHHHHhcc---------ch----HHHHHHHHH
Confidence 357789999999999999998875431 1111223555542 2222222110 00 112222221
Q ss_pred HHcCCeEEEEEeCCCcc------ccc-----chhc--CCCCCCCcEEEEEcCChhhhhcc--------ccccccccCCCC
Q 048180 181 LLETGKILLILDNMRKA------FSL-----EEIG--IPTLSNSLRIIITSPSSSLCRQM--------KCRERFALNLLT 239 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~------~~~-----~~l~--~~~~~~gs~IivTTr~~~v~~~~--------~~~~~~~l~~L~ 239 (824)
...-+|++|++... .++ +.+. ......+.+||+++....+.... .....+.+++++
T Consensus 121 ---a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t 197 (287)
T CHL00181 121 ---AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYT 197 (287)
T ss_pred ---ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcC
Confidence 12348999999753 012 1111 11122334677777544332111 123467889999
Q ss_pred hHHHHHHHHHHhcCc
Q 048180 240 DEEAYLLLINEVGLA 254 (824)
Q Consensus 240 ~~~~~~Lf~~~~~~~ 254 (824)
.++..+++...+-..
T Consensus 198 ~~el~~I~~~~l~~~ 212 (287)
T CHL00181 198 PEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988888776543
No 146
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.23 E-value=0.0024 Score=66.06 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
+...-+.++|++|+||||+|+.+++...
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456678999999999999999998753
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.22 E-value=0.0049 Score=67.24 Aligned_cols=150 Identities=12% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+-|-++|++|.|||++|+++++.... .| +.+ .. ..+.... ++ +....+.+.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~----~f---i~i--~~----s~l~~k~---~g----------e~~~~lr~l 230 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTA----TF---IRV--VG----SEFVQKY---LG----------EGPRMVRDV 230 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCC----CE---EEE--eh----HHHHHHh---cc----------hhHHHHHHH
Confidence 34577889999999999999999987532 12 222 11 1111111 11 011223333
Q ss_pred HHHHHcCCeEEEEEeCCCccc------------cc----chh-c-C-CCC-CCCcEEEEEcCChhhhhc--c---ccccc
Q 048180 178 LQTLLETGKILLILDNMRKAF------------SL----EEI-G-I-PTL-SNSLRIIITSPSSSLCRQ--M---KCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~------------~~----~~l-~-~-~~~-~~gs~IivTTr~~~v~~~--~---~~~~~ 232 (824)
+.......+.+|++|+++... .. ..+ . . ... ..+-.||.||........ . ..+..
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~ 310 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 310 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEE
Confidence 333334678999999986431 01 111 1 0 111 123467777765443211 1 22346
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
+++...+.++-.++|..+....+.....++ ..+++.+.|.-
T Consensus 311 I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 311 IEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 788888888888888776644332122233 34555666653
No 148
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00059 Score=64.39 Aligned_cols=80 Identities=33% Similarity=0.431 Sum_probs=50.8
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc--cccCcccccEEec
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK--SLSSLKYLTVLLL 523 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~--~i~~l~~L~~L~L 523 (824)
.....+++.+|++..++.+..+++|.+|.+.+|. +..+.+.+-.-+++|..|.|.+|++.++.+ .+..|+.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3455667777777777777777777777777775 455555544556667777777777655432 3445556666665
Q ss_pred ccc
Q 048180 524 QNC 526 (824)
Q Consensus 524 ~~c 526 (824)
-+|
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 554
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.21 E-value=0.0016 Score=71.57 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-+.++|++|.|||++|+++++.... .| +.+... ++.... ++ +....+...+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~----~f-----i~V~~s----eL~~k~---~G----------e~~~~vr~lF 269 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSA----TF-----LRVVGS----ELIQKY---LG----------DGPKLVRELF 269 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC----CE-----EEEecc----hhhhhh---cc----------hHHHHHHHHH
Confidence 4456789999999999999999997533 23 222111 111110 00 0112233333
Q ss_pred HHHHcCCeEEEEEeCCCcccc-----------------cchhc-C-CC-CCCCcEEEEEcCChhhhhc--c---cccccc
Q 048180 179 QTLLETGKILLILDNMRKAFS-----------------LEEIG-I-PT-LSNSLRIIITSPSSSLCRQ--M---KCRERF 233 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~-----------------~~~l~-~-~~-~~~gs~IivTTr~~~v~~~--~---~~~~~~ 233 (824)
.....+.+.+|+||+++.... ...+. + .+ ...+-+||.||........ . .....+
T Consensus 270 ~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I 349 (438)
T PTZ00361 270 RVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKI 349 (438)
T ss_pred HHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEE
Confidence 333346778999999753210 00010 0 01 1223477777765444322 1 223578
Q ss_pred ccCCCChHHHHHHHHHHhcCc
Q 048180 234 ALNLLTDEEAYLLLINEVGLA 254 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~ 254 (824)
++...+.++-.++|..++...
T Consensus 350 ~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 350 EFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred EeCCCCHHHHHHHHHHHHhcC
Confidence 899999999999998877544
No 150
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.21 E-value=3.7e-05 Score=67.50 Aligned_cols=105 Identities=25% Similarity=0.297 Sum_probs=68.7
Q ss_pred EEeccCCCcCCCC----ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccc
Q 048180 451 VSLMGNNLRELRT----CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 451 L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c 526 (824)
+.++++.+..+++ +....+|...++++|. ..++|+.+..+++.+..|+|++|.+..+|..+..++.||.|+++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 3444444433333 4445567777777775 5667777767777778888888888777777777777777777775
Q ss_pred cccccCC-CcccCCCccEEeccCCCCcccCcc
Q 048180 527 IYLTCLP-SLAELVELMVLDVSGSGIAEFPDG 557 (824)
Q Consensus 527 ~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~ 557 (824)
+ +...| -|..|.+|-.||..++.+..+|..
T Consensus 111 ~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 111 P-LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred c-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 4 34444 355577777777776666666654
No 151
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.20 E-value=0.0067 Score=64.88 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++-++|++|+||||+|+.+++..
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4678889999999999999998875
No 152
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0056 Score=65.77 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=83.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
.-..+.|||..|.|||.|++++.+..... ......+.++ ......+.+..+..+ =.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~----~~~a~v~y~~----se~f~~~~v~a~~~~-------------~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN----GPNARVVYLT----SEDFTNDFVKALRDN-------------EMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh----CCCceEEecc----HHHHHHHHHHHHHhh-------------hHHHH
Confidence 46789999999999999999999987553 3322233332 334444444433210 11224
Q ss_pred HHHHcCCeEEEEEeCCCccc---ccchhcC----CCCCCCcEEEEEcCC---------hhhhhccccccccccCCCChHH
Q 048180 179 QTLLETGKILLILDNMRKAF---SLEEIGI----PTLSNSLRIIITSPS---------SSLCRQMKCRERFALNLLTDEE 242 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~---~~~~l~~----~~~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~~ 242 (824)
++.. .-=++++||++-.. .|+.-.+ .+...|..||+|++. ..+.+++...-++++.+++.+.
T Consensus 171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 4333 33488999996542 2332211 122345589998854 3344555556789999999999
Q ss_pred HHHHHHHHhcCcC
Q 048180 243 AYLLLINEVGLAG 255 (824)
Q Consensus 243 ~~~Lf~~~~~~~~ 255 (824)
-..++.+++...+
T Consensus 249 r~aiL~kka~~~~ 261 (408)
T COG0593 249 RLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHHhcC
Confidence 9999988775544
No 153
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.18 E-value=0.001 Score=61.37 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+.|+|++|+||||+|+.++.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 57899999999999999999987643
No 154
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.18 E-value=0.014 Score=56.27 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.5
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+.+.+-+-|.||+|+||||-+..+++..-.
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 456788889999999999999999887654
No 155
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0062 Score=70.45 Aligned_cols=198 Identities=15% Similarity=0.089 Sum_probs=102.2
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+.+|-+.+++.|...... ..-...+-++|..|+||||+|+.+.+..... .+-.....++.....+.
T Consensus 17 eiiGq~~~~~~L~~~i~~------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~--------~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAE------GRVAHAYLFTGPRGVGKTSTARILAKAVNCT--------TNDPKGRPCGTCEMCRA 82 (585)
T ss_pred HhcCCHHHHHHHHHHHHh------CCCceEEEEECCCCCCHHHHHHHHHHHhcCC--------CCCCCCCCCccCHHHHH
Confidence 344545555555444321 1123456799999999999999999875321 00000112233344445
Q ss_pred HHHhcccccC---C-CcchhhhHHHHHHHHHHH-HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEc-CChh
Q 048180 153 IARKIDFVLS---S-DESVRDNAILLENALQTL-LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITS-PSSS 222 (824)
Q Consensus 153 i~~~l~~~~~---~-~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTT-r~~~ 222 (824)
|......+.. . .....+....+.+.+... ..+++-++|+|+++... ..+.+. +........+|++| ....
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 5443322110 0 001111122222222211 12556789999987553 344431 11112345555544 4333
Q ss_pred hhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 048180 223 LCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHH 287 (824)
Q Consensus 223 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l 287 (824)
+.... .....+++..++.++....+.+.+...+...+ .+....|++.++|.+..+...-..+
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33221 12346788899999888888777654432122 2456789999999886655544433
No 156
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.007 Score=71.86 Aligned_cols=190 Identities=14% Similarity=0.094 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
++++-+.+++.|...... ..-...+-++|+.|+||||+|+.+.+.+... +... ...++.-.-.+.
T Consensus 16 eiiGqe~v~~~L~~~i~~------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~--~~~~-------~~pCg~C~sC~~ 80 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDS------GRINHAYLFSGPRGCGKTSSARILARSLNCV--EGPT-------STPCGECDSCVA 80 (824)
T ss_pred HhcCcHHHHHHHHHHHHh------CCCCceEEEECCCCCCHHHHHHHHHHHhCcc--cCCC-------CCCCcccHHHHH
Confidence 344444555555444322 1223567899999999999999999876421 1000 001111111122
Q ss_pred HHHh----cc---cccCCCcchhhhHHHHHHHHH-HHHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcE-EEEEcC
Q 048180 153 IARK----ID---FVLSSDESVRDNAILLENALQ-TLLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLR-IIITSP 219 (824)
Q Consensus 153 i~~~----l~---~~~~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~-IivTTr 219 (824)
|... .. .+... ...-+.+..+.+.+. .-..+++-++|||+++... .++.|. +-.....+. |++||.
T Consensus 81 ~~~g~~~~~dv~eidaas-~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAAS-HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred HHcCCCCCCcEEEecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 2111 00 00000 000111122222211 1123555678899998663 344431 111223444 445555
Q ss_pred Chhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHH
Q 048180 220 SSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAII 281 (824)
Q Consensus 220 ~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 281 (824)
...+...+ .....|++..++.++..+.+.+.+-..+... -.+....|++.++|-+..+.
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 54454332 2235789999999998888877654333111 12345678899999874443
No 157
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0063 Score=69.35 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=99.1
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
+.+|-+.+++.|...... ..-...+-++|+.|+||||+|+.+.+..... ...+ ...++.-...+.
T Consensus 14 eivGq~~i~~~L~~~i~~------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~-------~~pCg~C~~C~~ 78 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDA------GRINHAYLFSGPRGCGKTSSARILARSLNCA--QGPT-------ATPCGVCESCVA 78 (584)
T ss_pred HhcCcHHHHHHHHHHHHc------CCCCeEEEEECCCCCCHHHHHHHHHHHhccc--cCCC-------CCcccccHHHHH
Confidence 344545555555444422 1223457899999999999999999875421 1000 011111122222
Q ss_pred HHHhcccc-----cCC-CcchhhhHHHHHHHHHHH-HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcE-EEEEcCC
Q 048180 153 IARKIDFV-----LSS-DESVRDNAILLENALQTL-LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLR-IIITSPS 220 (824)
Q Consensus 153 i~~~l~~~-----~~~-~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~-IivTTr~ 220 (824)
|...-+.. .+. ....-+....+.+.+... ..+++-++|+|+++... ..+.+. +........ |++||..
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 22110000 000 000111222233322211 13566688999997653 344431 112223444 4556655
Q ss_pred hhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChH-HHHHHHHHH
Q 048180 221 SSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPL-AIITFAKHH 287 (824)
Q Consensus 221 ~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~g~~l 287 (824)
..+.... .....|++.+++.++..+.+.+.+...+...+ .+....|++.++|-+- |+..+-.++
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5544322 22457899999999988888776654432121 2345678889999774 444444433
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.013 Score=65.81 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=56.7
Q ss_pred CCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEE-EEcCChhhhhc-cccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEIG--IPTLSNSLRII-ITSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~Ii-vTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++-++|+|+++... ..+.+. +........+| +||+...+... ......+++.+++.++....+.+.+-..+..
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 567799999987553 333331 11222334444 45544333322 1223478889999999888877766443321
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
. -.+....|++.++|.+..+.....
T Consensus 198 i---d~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 198 Y---EEKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 123456788889997765554443
No 159
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.0014 Score=62.76 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=25.5
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEE
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIW 137 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~w 137 (824)
.|.|+|++|+||||||+++....... .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~-~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP-VLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC-eEecCCEEe
Confidence 48999999999999999998765332 123455555
No 160
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.11 E-value=0.0028 Score=62.04 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC-cCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY-EDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
++||.+||+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++..........+..+.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 3799999999999999988888877542 22466666543 345667778888888765432222222223333444
Q ss_pred HHHHcCCeEEEEEeCC
Q 048180 179 QTLLETGKILLILDNM 194 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv 194 (824)
++.-..+.=+|++|=.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 3322233347777754
No 161
>PRK12377 putative replication protein; Provisional
Probab=97.09 E-value=0.00096 Score=67.56 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
...+.++|..|+|||+||.++.+....+ ...++++++ .+++..+...... .. ....+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~----g~~v~~i~~------~~l~~~l~~~~~~----~~----~~~~~l~~l- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK----GRSVIVVTV------PDVMSRLHESYDN----GQ----SGEKFLQEL- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc----CCCeEEEEH------HHHHHHHHHHHhc----cc----hHHHHHHHh-
Confidence 3678999999999999999999987542 334566654 3455555443211 00 011222333
Q ss_pred HHHcCCeEEEEEeCCCc
Q 048180 180 TLLETGKILLILDNMRK 196 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~ 196 (824)
.+--||||||+..
T Consensus 162 ----~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 ----CKVDLLVLDEIGI 174 (248)
T ss_pred ----cCCCEEEEcCCCC
Confidence 5677999999943
No 162
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.023 Score=60.77 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=101.6
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
.+...-+-|.|-+|.|||.+...|+.+.....++ .+++.+..-.-.....++..|...+-......... .+..+
T Consensus 172 ~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~--~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~----~~~~~ 245 (529)
T KOG2227|consen 172 LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS--PVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTG----MQHLE 245 (529)
T ss_pred cccCcceEeeCCCCcchHHHHHHHHHhhhhhccc--ceeEEEeeccccchHHHHHHHHHHHHHHhcCCchh----HHHHH
Confidence 3456778899999999999999999987653221 24566666555667888888888773222221111 22334
Q ss_pred HHHHHHcCC--eEEEEEeCCCcccc-----cchhcCCCCC-CCcEEEE---------EcCChhhhhc--cccccccccCC
Q 048180 177 ALQTLLETG--KILLILDNMRKAFS-----LEEIGIPTLS-NSLRIII---------TSPSSSLCRQ--MKCRERFALNL 237 (824)
Q Consensus 177 ~l~~~l~~k--r~LlVlDdv~~~~~-----~~~l~~~~~~-~gs~Iiv---------TTr~~~v~~~--~~~~~~~~l~~ 237 (824)
.+..+..+. -+|+|+|.++.... +-.+ +.|.. .++|+|+ |-|.-.-.+. .........++
T Consensus 246 ~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~P 324 (529)
T KOG2227|consen 246 KFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPP 324 (529)
T ss_pred HHHHHHhcccceEEEEechhhHHhhcccceeeee-hhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecC
Confidence 444444443 49999999875421 1111 12221 4554442 2221111111 11234566788
Q ss_pred CChHHHHHHHHHHhcCcCC--CCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 238 LTDEEAYLLLINEVGLAGK--VLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~~--~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
-+.++..+++..+.-.... ..+..++-.|++++...|-+--|+-+.-
T Consensus 325 YTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 325 YTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred CCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 8999999999998764432 1223344444444444444555554443
No 163
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.017 Score=66.87 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=58.2
Q ss_pred CCeEEEEEeCCCccc--ccchhc--CCCCCCCcEE-EEEcCChhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEIG--IPTLSNSLRI-IITSPSSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~I-ivTTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++=++|+|+++... .++.+. +......+.+ ++||+...+.... ....++++++++.++....+.+.+...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 455588999987664 344442 1122234544 4565555554332 233578999999999988888766544321
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.. .+....|++.++|-.--+...
T Consensus 200 i~---~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 200 AE---PEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 235678899999976544333
No 164
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.06 E-value=0.0042 Score=63.31 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=55.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhcccc-ceEEEEEeCCcCC-HHHHHHHHHHhccc-------ccCCC-cchhhh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHF-NTFIWVEASYEDD-LKELQIKIARKIDF-------VLSSD-ESVRDN 170 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~-~~~~~~ 170 (824)
.-++|+|..|.||||||+.+++....+ | +.++++-+.+... +.++..++...-.. ...++ ......
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~----~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA----HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc----CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 468999999999999999999987654 4 3456666666544 45566665542111 00111 111111
Q ss_pred HHHHHHHHHHHH---cCCeEEEEEeCCCcc
Q 048180 171 AILLENALQTLL---ETGKILLILDNMRKA 197 (824)
Q Consensus 171 ~~~l~~~l~~~l---~~kr~LlVlDdv~~~ 197 (824)
.....-.+.+++ +++.+|+|+||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 112222233444 389999999998543
No 165
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.02 E-value=0.0053 Score=65.11 Aligned_cols=92 Identities=8% Similarity=0.089 Sum_probs=59.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccce-EEEEEeCCc-CCHHHHHHHHHHhcccccCCCcchh-h----hHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNT-FIWVEASYE-DDLKELQIKIARKIDFVLSSDESVR-D----NAIL 173 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~-~----~~~~ 173 (824)
.-+.|+|..|.|||||++.+.+....+ +=+. ++|+.+.+. ..+.++++.+...+........... . ....
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~---~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAAN---HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc---CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 355899999999999999999987542 2233 467666554 5678888888887764432222111 1 1122
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 174 LENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 174 l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
..+++.+ ++++++||+|++...
T Consensus 211 ~Ae~f~~--~GkdVVLvlDsltr~ 232 (380)
T PRK12608 211 RAKRLVE--QGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHH--cCCCEEEEEeCcHHH
Confidence 2333332 489999999998543
No 166
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.027 Score=55.70 Aligned_cols=181 Identities=19% Similarity=0.179 Sum_probs=104.8
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEe-CCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEA-SYEDDLKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
.++-.++.|+|.-|.|||.++|+....... +.++-|.+ .+......+...|...+.. ............+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~------d~~~~v~i~~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e~~~ 119 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE------DQVAVVVIDKPTLSDATLLEAIVADLES--QPKVNVNAVLEQID 119 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC------CceEEEEecCcchhHHHHHHHHHHHhcc--CccchhHHHHHHHH
Confidence 345679999999999999999955443322 12222333 3345677788888888765 22222333334444
Q ss_pred HHHHHHH-cCCe-EEEEEeCCCcc--cccchhcCC--CCCCCc---EEEEEcC--------Chhhhhccccccc-cccCC
Q 048180 176 NALQTLL-ETGK-ILLILDNMRKA--FSLEEIGIP--TLSNSL---RIIITSP--------SSSLCRQMKCRER-FALNL 237 (824)
Q Consensus 176 ~~l~~~l-~~kr-~LlVlDdv~~~--~~~~~l~~~--~~~~gs---~IivTTr--------~~~v~~~~~~~~~-~~l~~ 237 (824)
+.|.... ++|| +.+++||.... +..+.++.- ....++ +|+..-. -......-..... |++.|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 4444333 4788 99999998654 233333211 111122 2333211 1111111111123 89999
Q ss_pred CChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 238 LTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
++.++....+..+..+.....+--..+....|..+..|.|.+|..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999988888777776554323323345567788899999999987764
No 167
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.0011 Score=62.69 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=59.7
Q ss_pred cccEEecccccccccCCCcccCCCccEEeccCCCCcccCccccc-CCCCcEEeccCccccccch-hhhcCCCCCcEEEee
Q 048180 517 YLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNH-LTKLLFLNLSRTRVRNFPL-HLVTSLHNLQEFSMI 594 (824)
Q Consensus 517 ~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~-L~~L~~L~l~~~~~~~~~~-~~l~~L~~L~~L~l~ 594 (824)
+...+||++| .+..++.+..++.|.+|.+.+|.|+.+-..+.. +++|..|.+.+|++..+-. .-+..++.|++|.+-
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceeccccc-chhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445566653 455555566666777777777777766665554 3557777777766633211 115566677777776
Q ss_pred cCccccccccccchhhhhchHhhhcCCCccEEEEEec
Q 048180 595 GCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFV 631 (824)
Q Consensus 595 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 631 (824)
+|....-. ....--+..+++|+.||....
T Consensus 122 ~Npv~~k~--------~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKK--------NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhccc--------CceeEEEEecCcceEeehhhh
Confidence 66532211 111223566677777766543
No 168
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.027 Score=60.96 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=93.2
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
..++.-+-+.|++|.|||+||.+++.. +.|..+=-+ .+.++ +| -++......+..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~------S~FPFvKii---Spe~m----------iG------~sEsaKc~~i~k 589 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS------SDFPFVKII---SPEDM----------IG------LSESAKCAHIKK 589 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh------cCCCeEEEe---ChHHc----------cC------ccHHHHHHHHHH
Confidence 345667778899999999999999875 236533222 11110 01 122334456667
Q ss_pred HHHHHHcCCeEEEEEeCCCcccccchhcCC---------------CCCCCc--EEEEEcCChhhhhccccc----ccccc
Q 048180 177 ALQTLLETGKILLILDNMRKAFSLEEIGIP---------------TLSNSL--RIIITSPSSSLCRQMKCR----ERFAL 235 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~---------------~~~~gs--~IivTTr~~~v~~~~~~~----~~~~l 235 (824)
.+....+..--.||+||+...-+|-.++.. .+.+|- -|+-||..+.|.+.|+.. ..|.+
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 777777788899999999888887655211 112343 455588888888887643 47888
Q ss_pred CCCCh-HHHHHHHHHHh-cCcCCCCchhHHHHHHHHHHHh
Q 048180 236 NLLTD-EEAYLLLINEV-GLAGKVLEGEIEFGLKNIAKKC 273 (824)
Q Consensus 236 ~~L~~-~~~~~Lf~~~~-~~~~~~~~~~~~~~~~~i~~~c 273 (824)
+.++. ++..+.+...- | .+.+.+.++++...+|
T Consensus 670 pnl~~~~~~~~vl~~~n~f-----sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELNIF-----SDDEVRAIAEQLLSKK 704 (744)
T ss_pred CccCchHHHHHHHHHccCC-----CcchhHHHHHHHhccc
Confidence 88887 77777766543 3 2344455556666555
No 169
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.021 Score=64.16 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l 178 (824)
..++-++|+.|.||||+|+.+.+..-.. ..-+ ...+....-.+.+.......... ........+.+++.+
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~--~~~~-------~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IReli 106 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCE--QGPS-------STPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELI 106 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCC--CCCC-------CCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHH
Confidence 3466899999999999999998875321 0000 00011111111111111000000 000001123333333
Q ss_pred HHH----HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCC-hhhhhc-cccccccccCCCChHHHHHHHH
Q 048180 179 QTL----LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPS-SSLCRQ-MKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 179 ~~~----l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
... ..+++-++|+|+++... ..+.+. +-.....+++|++|.+ ..+... ......+++.+++.++....+.
T Consensus 107 e~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~ 186 (535)
T PRK08451 107 EQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLK 186 (535)
T ss_pred HHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHH
Confidence 210 11556688999997663 233331 1112244565555544 222211 1223588999999999888887
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
+.+...+... -++..+.|++.++|.+.-+..+-
T Consensus 187 ~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 187 TILEKEGVSY---EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 7665443211 23456789999999886555443
No 170
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.94 E-value=0.009 Score=66.70 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=73.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhcc-ccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRS-HFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
..+-|-++|++|.|||++|+++++.....+.. .+....|+.++.. +++.. . . .........+.+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~----eLl~k----y----v--Gete~~ir~iF~~ 280 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP----ELLNK----Y----V--GETERQIRLIFQR 280 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch----hhccc----c----c--chHHHHHHHHHHH
Confidence 34568899999999999999999986432111 0123344444331 11110 0 0 0111122233333
Q ss_pred HHHHH-cCCeEEEEEeCCCccc---------ccc-----hh-c-C-CCCCCCc-EEEEEcCChhhhh-c-c---cccccc
Q 048180 178 LQTLL-ETGKILLILDNMRKAF---------SLE-----EI-G-I-PTLSNSL-RIIITSPSSSLCR-Q-M---KCRERF 233 (824)
Q Consensus 178 l~~~l-~~kr~LlVlDdv~~~~---------~~~-----~l-~-~-~~~~~gs-~IivTTr~~~v~~-~-~---~~~~~~ 233 (824)
.++.. .+++.+|+||+++... +.+ .+ . + .....+. .||.||....... . . ..+..+
T Consensus 281 Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I 360 (512)
T TIGR03689 281 AREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKI 360 (512)
T ss_pred HHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEE
Confidence 33221 3578999999997431 111 11 0 1 1111223 4455554433221 1 1 223468
Q ss_pred ccCCCChHHHHHHHHHHhc
Q 048180 234 ALNLLTDEEAYLLLINEVG 252 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~ 252 (824)
++...+.++..++|.++..
T Consensus 361 ~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 361 RIERPDAEAAADIFSKYLT 379 (512)
T ss_pred EeCCCCHHHHHHHHHHHhh
Confidence 9999999999999988864
No 171
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0092 Score=68.93 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=91.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENALQ 179 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~ 179 (824)
..+-++|..|+||||+|+.+++..... ..... ....+...+..+.+......+... ........+.+++.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~-----~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~ 111 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCL--NSDKP-----TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIE 111 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCC--CcCCC-----CCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHH
Confidence 567789999999999999999886431 00000 012233334444444332211100 0001122233333332
Q ss_pred HH----HcCCeEEEEEeCCCccc--ccchhcC--CCCCCCcEEE-EEcCChhhhhcc-ccccccccCCCChHHHHHHHHH
Q 048180 180 TL----LETGKILLILDNMRKAF--SLEEIGI--PTLSNSLRII-ITSPSSSLCRQM-KCRERFALNLLTDEEAYLLLIN 249 (824)
Q Consensus 180 ~~----l~~kr~LlVlDdv~~~~--~~~~l~~--~~~~~gs~Ii-vTTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 249 (824)
.. ..+++-++|+|+++... .++.+.- ........+| +|+....+.... .....+++..++.++....+.+
T Consensus 112 ~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 112 RAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred HHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence 11 12556688999998663 3444421 1112234444 455433333222 1234677888999888877776
Q ss_pred HhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 250 EVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
.+...+.... .+....|++.++|.+..+..+-.
T Consensus 192 ia~kegi~is---~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 192 IAEKESIEIE---PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6544332122 23467889999998765554443
No 172
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.91 E-value=0.01 Score=59.93 Aligned_cols=184 Identities=21% Similarity=0.184 Sum_probs=100.1
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEE-EEeCCcCCHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIW-VEASYEDDLKELQI 151 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~ 151 (824)
+..+-+..+..|..... ....++.-.+|++|.|||+-|+.++...-. .+.|.+++- .++|..-... +.+
T Consensus 37 e~~gQe~vV~~L~~a~~-------~~~lp~~LFyGPpGTGKTStalafar~L~~--~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALL-------RRILPHYLFYGPPGTGKTSTALAFARALNC--EQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred hhcchHHHHHHHHHHHh-------hcCCceEEeeCCCCCcHhHHHHHHHHHhcC--ccccccchhhhccccccccc-chh
Confidence 34444455555544442 245788889999999999999999887644 455776653 2333332211 111
Q ss_pred HHHHhcccccCCCcchhhhHHHHHHHHHHHH--cCCe-EEEEEeCCCcc--cccchhcCC--CCCCCcEEE-EEcCChhh
Q 048180 152 KIARKIDFVLSSDESVRDNAILLENALQTLL--ETGK-ILLILDNMRKA--FSLEEIGIP--TLSNSLRII-ITSPSSSL 223 (824)
Q Consensus 152 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~l~~~--~~~~gs~Ii-vTTr~~~v 223 (824)
.=+.. ...+........ ..+. -.+|||+++.+ +.|..++-. .....+|.| ||+--..+
T Consensus 107 ~Kik~--------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 107 EKIKN--------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hhhcC--------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 00000 000000000000 0223 47899999877 568877421 223344544 44433322
Q ss_pred hhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC-hHHHHHH
Q 048180 224 CRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL-PLAIITF 283 (824)
Q Consensus 224 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 283 (824)
.... ..-..|..++|.+++...-+...+-.++...+ .+.-+.|++.++|- --|+..+
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 2211 11247889999999999988888876653222 23456788888884 3444433
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.018 Score=61.24 Aligned_cols=168 Identities=12% Similarity=0.074 Sum_probs=85.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc---CCC-cchhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL---SSD-ESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~~~-~~~~~~~~~l~ 175 (824)
...+-++|+.|+||||+|+.+....--. +... ...++.-.--+.+...-..+. ... .......++++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~--~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCE--APQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCC--CCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 4567799999999999999999876431 1000 011111111112211110000 000 00111223333
Q ss_pred H---HHHHH-HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCC-hhhhhcc-ccccccccCCCChHHHHH
Q 048180 176 N---ALQTL-LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPS-SSLCRQM-KCRERFALNLLTDEEAYL 245 (824)
Q Consensus 176 ~---~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~ 245 (824)
+ .+... ..+++-++|+|+++... ..+.+. +-.+..++.+|+||.+ ..+.... .....+.+.+++.+++.+
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 3 22211 12344455679998764 333331 1122245666666655 3443332 223578999999999988
Q ss_pred HHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 246 LLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 246 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.+....... . .+.+..++..++|.|..+..+
T Consensus 173 ~L~~~~~~~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPES---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhcccC---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 887653111 1 223456788999999765544
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.009 Score=65.46 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=70.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTL 181 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 181 (824)
++.|+|+-++||||+++.+...... ..+++..-+......-+. +.+.......
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~-------~~iy~~~~d~~~~~~~l~--------------------d~~~~~~~~~ 91 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE-------EIIYINFDDLRLDRIELL--------------------DLLRAYIELK 91 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc-------ceEEEEecchhcchhhHH--------------------HHHHHHHHhh
Confidence 9999999999999999666544321 144444322211100001 1111111111
Q ss_pred HcCCeEEEEEeCCCcccccchhc--CCCCCCCcEEEEEcCChhhhhc------cccccccccCCCChHHHHHHH
Q 048180 182 LETGKILLILDNMRKAFSLEEIG--IPTLSNSLRIIITSPSSSLCRQ------MKCRERFALNLLTDEEAYLLL 247 (824)
Q Consensus 182 l~~kr~LlVlDdv~~~~~~~~l~--~~~~~~gs~IivTTr~~~v~~~------~~~~~~~~l~~L~~~~~~~Lf 247 (824)
..++.+|+||.|.....|+... +...++. +|++|+.+...... .+....+++.||+..|-..+-
T Consensus 92 -~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 92 -EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred -ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 1277899999999999998752 2222223 78888887655332 133457899999999987653
No 175
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.79 E-value=0.0012 Score=59.41 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 176
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=0.00058 Score=77.92 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=26.7
Q ss_pred ccccCeEeccCCcchhccccCc-c-cCCCccEEEecCCCCcCCC
Q 048180 762 WRSLRKLILSNLPELRFMYSGE-A-QCDFVQTIGIWSCCKLERF 803 (824)
Q Consensus 762 ~p~L~~L~l~~~~~L~~~~~~~-~-~lpsL~~L~i~~C~~L~~l 803 (824)
+++|+.|.+..|.....-.... . .+..+..+.+.+|+.+..-
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 3448888888886554332211 1 1677888888888776643
No 177
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.76 E-value=0.00016 Score=63.69 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=39.4
Q ss_pred CcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEE
Q 048180 514 SLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEF 591 (824)
Q Consensus 514 ~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L 591 (824)
...+|...+|++| .++.+| . ..+.+-+.+|++++|.+..+|.++..++.|+.|+++.|.+...|.- +..|.+|-.|
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v-i~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRV-IAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHH-HHHHHhHHHh
Confidence 3344444444442 334444 2 2233345555555555555555555555555555555555444432 3335555555
Q ss_pred EeecCc
Q 048180 592 SMIGCD 597 (824)
Q Consensus 592 ~l~~~~ 597 (824)
+..+|.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 444443
No 178
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.019 Score=65.56 Aligned_cols=193 Identities=15% Similarity=0.060 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHH
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKI 153 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 153 (824)
..|-+.++..+...... ..-...+-++|+.|+||||+|+.+++..-.. .... ..+++.-.--+.|
T Consensus 18 iiGqe~iv~~L~~~i~~------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~--~~~~-------~~pC~~C~~C~~i 82 (563)
T PRK06647 18 LEGQDFVVETLKHSIES------NKIANAYIFSGPRGVGKTSSARAFARCLNCV--NGPT-------PMPCGECSSCKSI 82 (563)
T ss_pred ccCcHHHHHHHHHHHHc------CCCCeEEEEECCCCCCHHHHHHHHHHhhccc--cCCC-------CCCCccchHHHHH
Confidence 34445555555444422 1224568899999999999999999875321 0000 0011111111222
Q ss_pred HHhcccccCC-CcchhhhHHHHHH---HHHH-HHcCCeEEEEEeCCCccc--ccchhcCCC--CCCCcEEEE-EcCChhh
Q 048180 154 ARKIDFVLSS-DESVRDNAILLEN---ALQT-LLETGKILLILDNMRKAF--SLEEIGIPT--LSNSLRIII-TSPSSSL 223 (824)
Q Consensus 154 ~~~l~~~~~~-~~~~~~~~~~l~~---~l~~-~l~~kr~LlVlDdv~~~~--~~~~l~~~~--~~~gs~Iiv-TTr~~~v 223 (824)
...-..+... ........+.+++ .+.. -..+++-++|+|+++... .++.+.-.. +.....+|. ||....+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 2111000000 0000111222222 1111 123566689999987664 344442111 223445554 4443444
Q ss_pred hhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 224 CRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 224 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
.... .....++..+++.++..+.+.+.+...+. .--++....|++.++|.+..+..+-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3221 22346889999999888888776644332 1123456678889999875554443
No 179
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.74 E-value=0.0044 Score=74.49 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=71.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhcc--ccceEEEE-EeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRS--HFNTFIWV-EASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--~F~~~~wv-~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
-+-++|.+|+||||+|+.++++....... ..+..+|. .++. + .. + .. ...+....+++.+
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l----~a--g--~~---~~ge~e~~lk~ii 272 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L----QA--G--AS---VKGEFENRLKSVI 272 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h----hc--c--cc---cchHHHHHHHHHH
Confidence 34599999999999999999986431000 12333432 2111 0 00 0 00 0111112233333
Q ss_pred HHHH-cCCeEEEEEeCCCccc-------ccc--hhcCCCCCCCc-EEEEEcCChhhhhcc-------ccccccccCCCCh
Q 048180 179 QTLL-ETGKILLILDNMRKAF-------SLE--EIGIPTLSNSL-RIIITSPSSSLCRQM-------KCRERFALNLLTD 240 (824)
Q Consensus 179 ~~~l-~~kr~LlVlDdv~~~~-------~~~--~l~~~~~~~gs-~IivTTr~~~v~~~~-------~~~~~~~l~~L~~ 240 (824)
.+.- .+++.+|++|+++... .-+ .+..|.-.+|. ++|-||...+....+ ..-..+.+++++.
T Consensus 273 ~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~ 352 (852)
T TIGR03345 273 DEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDE 352 (852)
T ss_pred HHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCH
Confidence 3222 2578999999986542 122 23345445665 666666543321111 1124789999999
Q ss_pred HHHHHHHHHHh
Q 048180 241 EEAYLLLINEV 251 (824)
Q Consensus 241 ~~~~~Lf~~~~ 251 (824)
++..+++....
T Consensus 353 ~~~~~iL~~~~ 363 (852)
T TIGR03345 353 ETAIRMLRGLA 363 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999975443
No 180
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.027 Score=62.76 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=54.1
Q ss_pred CCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEc-CChhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITS-PSSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTT-r~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++-++|+|+++... ..+.+. +........+|++| +...+.... .....+++.++++++....+...+-..+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 566788999987553 233321 11122344555554 433333221 223478999999999888777765433211
Q ss_pred CchhHHHHHHHHHHHhCCChHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai 280 (824)
. -.+.++.|++.++|-+.-+
T Consensus 200 i---~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 200 T---SREALLPIARAAQGSLRDA 219 (451)
T ss_pred C---CHHHHHHHHHHcCCCHHHH
Confidence 1 2345678899999966433
No 181
>PRK08181 transposase; Validated
Probab=96.70 E-value=0.0033 Score=64.56 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=44.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.-+.++|++|+|||.||..+.+....+ ...++|++ ..+++.++..... . .......+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~----g~~v~f~~------~~~L~~~l~~a~~-----~----~~~~~~l~~l-- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIEN----GWRVLFTR------TTDLVQKLQVARR-----E----LQLESAIAKL-- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc----CCceeeee------HHHHHHHHHHHHh-----C----CcHHHHHHHH--
Confidence 458999999999999999999876442 22445554 3455555543211 0 1112222333
Q ss_pred HHcCCeEEEEEeCCCcc
Q 048180 181 LLETGKILLILDNMRKA 197 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~ 197 (824)
.+-=|||+||+...
T Consensus 166 ---~~~dLLIIDDlg~~ 179 (269)
T PRK08181 166 ---DKFDLLILDDLAYV 179 (269)
T ss_pred ---hcCCEEEEeccccc
Confidence 34569999999543
No 182
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.70 E-value=0.021 Score=59.00 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=51.3
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCH--HHHHHHHHHhcccccCCCcchhhhHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDL--KELQIKIARKIDFVLSSDESVRDNAILL 174 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l 174 (824)
..+.++|.++|++|+||||++..++...... + ..+.+++.. .+.. .+-++...+..+..........+.....
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g--~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~ 143 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQ--G--KSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVA 143 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhc--C--CEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHH
Confidence 3557899999999999999999998776441 1 245555543 2322 2333444454443221111111112233
Q ss_pred HHHHHHHHcCCeEEEEEeCCC
Q 048180 175 ENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 175 ~~~l~~~l~~kr~LlVlDdv~ 195 (824)
.+.++....+..-++++|-.-
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCC
Confidence 333443333555688889753
No 183
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.64 E-value=0.0088 Score=57.57 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++.++|++|.||||+++.++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7889999999999999999987654
No 184
>PRK06921 hypothetical protein; Provisional
Probab=96.64 E-value=0.0043 Score=63.96 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEe
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEA 140 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~ 140 (824)
...-+.++|..|+|||+||.++++.... +. -..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hc-CceEEEEEH
Confidence 3467899999999999999999998653 11 234566654
No 185
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.63 E-value=0.0046 Score=62.46 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
...+.++|.+|+|||+||.++++....+ -..+++++ ..+++..+..... . . +.....+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~----g~~v~~it------~~~l~~~l~~~~~-~--~----~~~~~~~l~~l- 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR----GKSVLIIT------VADIMSAMKDTFS-N--S----ETSEEQLLNDL- 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEE------HHHHHHHHHHHHh-h--c----cccHHHHHHHh-
Confidence 4578899999999999999999987542 22455553 3445555443321 0 0 01112233333
Q ss_pred HHHcCCeEEEEEeCCCcc
Q 048180 180 TLLETGKILLILDNMRKA 197 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~ 197 (824)
.+.=+||+||+...
T Consensus 161 ----~~~dlLvIDDig~~ 174 (244)
T PRK07952 161 ----SNVDLLVIDEIGVQ 174 (244)
T ss_pred ----ccCCEEEEeCCCCC
Confidence 24558899999654
No 186
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.63 E-value=0.0053 Score=58.28 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=30.6
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD 145 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 145 (824)
++.|+|.+|.||||+|+.+......+ -..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK----GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc----CCEEEEEECCcchH
Confidence 46899999999999999999876432 34677877765543
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.59 E-value=0.013 Score=67.38 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+++.|+|+.|.||||+++.++.....
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3468999999999999999999987643
No 188
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.58 E-value=0.074 Score=57.10 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccc---cceEEEEEeCCcCCHHHHHHHHHHhc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSH---FNTFIWVEASYEDDLKELQIKIARKI 157 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~l 157 (824)
....+|||.|.=|.||||+.+.+.+......... +...+|-......-...++..|..++
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 5678999999999999999999999876530011 12334444433333445555555555
No 189
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.55 E-value=0.013 Score=69.96 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=69.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhh-hcccc-ceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQ-YRSHF-NTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
=+-++|.+|+|||++|+.+++..... ....+ +..+|.. +...+... . ......+ ..+++.+.
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~----~----~~~g~~e---~~l~~i~~ 268 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAG----T----KYRGDFE---ERLKAVVS 268 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhh----c----cccchHH---HHHHHHHH
Confidence 34599999999999999999986431 01111 3445431 11111110 0 0001111 22333332
Q ss_pred HHHcCCeEEEEEeCCCccc----------ccchhcCCCCCCCc-EEEEEcCChhhhhc-------cccccccccCCCChH
Q 048180 180 TLLETGKILLILDNMRKAF----------SLEEIGIPTLSNSL-RIIITSPSSSLCRQ-------MKCRERFALNLLTDE 241 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~gs-~IivTTr~~~v~~~-------~~~~~~~~l~~L~~~ 241 (824)
+.-+.++.+|++|+++... +...+..|.-.+|. ++|-+|...+.... ...-..+++++++.+
T Consensus 269 ~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~ 348 (731)
T TIGR02639 269 EIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIE 348 (731)
T ss_pred HHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHH
Confidence 2223467899999987431 11122234334555 55554443222111 011236889999999
Q ss_pred HHHHHHHHHh
Q 048180 242 EAYLLLINEV 251 (824)
Q Consensus 242 ~~~~Lf~~~~ 251 (824)
+..+++....
T Consensus 349 ~~~~il~~~~ 358 (731)
T TIGR02639 349 ETVKILKGLK 358 (731)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 190
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.045 Score=63.11 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=95.6
Q ss_pred chhHHHHHHHHHHhhhhccccccccCC-ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQG-AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
+.+|-+++++.|..... .++ ...+-++|+.|+||||+|+.+.+..-.. +..+ ...++.....+
T Consensus 17 ~iiGq~~v~~~L~~~i~-------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~--~~~~-------~~~c~~c~~c~ 80 (576)
T PRK14965 17 DLTGQEHVSRTLQNAID-------TGRVAHAFLFTGARGVGKTSTARILAKALNCE--QGLT-------AEPCNVCPPCV 80 (576)
T ss_pred HccCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC--CCCC-------CCCCCccHHHH
Confidence 44455555555554432 223 3556789999999999999998875321 1000 01111222222
Q ss_pred HHHHhcccccC----CCcchhhhHHHHHHHHHHH-HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEE-EEEcCCh
Q 048180 152 KIARKIDFVLS----SDESVRDNAILLENALQTL-LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRI-IITSPSS 221 (824)
Q Consensus 152 ~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~I-ivTTr~~ 221 (824)
.|...-..+.. ......+.+..+.+.++.. ..+++-++|+|+++... ..+.+. +-.......+ ++||...
T Consensus 81 ~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred HHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 22211110000 0000111122233322211 12455578999997654 233331 1112234444 4565555
Q ss_pred hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh-HHHHHHHH
Q 048180 222 SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP-LAIITFAK 285 (824)
Q Consensus 222 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~g~ 285 (824)
.+.... .....+++++++.++....+...+-..+... -.+....|++.++|-. .|+..+-.
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 554332 2235788999999888877766554333111 1234567888888865 44444433
No 191
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.51 E-value=0.02 Score=57.11 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
..-+++-|+|.+|.|||++|.++....... -..++|++... +...++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ----GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECCC-CCHHHHHH
Confidence 345899999999999999999998775432 45789998876 66655544
No 192
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.063 Score=55.68 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=90.7
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
-+..+=|-+||++|.|||-||++|+++... .|+.|..+ ++.++-+ | +....+++
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---------tFIrvvgS----ElVqKYi---G----------EGaRlVRe 235 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDA---------TFIRVVGS----ELVQKYI---G----------EGARLVRE 235 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCc---------eEEEeccH----HHHHHHh---c----------cchHHHHH
Confidence 456677889999999999999999998543 34444332 2222221 1 11223333
Q ss_pred HHHHHHcCCeEEEEEeCCCccc----------c-------cchhc--CCCCCCCc-EEEEEcCChhhhh-----cccccc
Q 048180 177 ALQTLLETGKILLILDNMRKAF----------S-------LEEIG--IPTLSNSL-RIIITSPSSSLCR-----QMKCRE 231 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~~----------~-------~~~l~--~~~~~~gs-~IivTTr~~~v~~-----~~~~~~ 231 (824)
.++=.=......|.+|.++... + ++.+. .-+...|. |||..|-..++.. --.-++
T Consensus 236 lF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR 315 (406)
T COG1222 236 LFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDR 315 (406)
T ss_pred HHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccc
Confidence 3321223567999999886431 0 11221 12223444 8887776544432 112345
Q ss_pred ccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh----HHHHHHHHHHh
Q 048180 232 RFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP----LAIITFAKHHL 288 (824)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----lai~~~g~~l~ 288 (824)
.+++..-+.+.=.++|.-|+.+-+-...-+++ .+++.|.|.- -|+-+=|++++
T Consensus 316 kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 316 KIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred eeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHHHHhHHH
Confidence 77777555566667788787665433444444 4556666654 44555566655
No 193
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0019 Score=63.75 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=62.9
Q ss_pred CcccccEEecccccccccCCCcccCCCccEEeccCC--CCc-ccCcccccCCCCcEEeccCcccc---ccchhhhcCCCC
Q 048180 514 SLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGS--GIA-EFPDGMNHLTKLLFLNLSRTRVR---NFPLHLVTSLHN 587 (824)
Q Consensus 514 ~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~---~~~~~~l~~L~~ 587 (824)
.+..|++|++.++ .++++-.+-.|++|++|+++.| .+. .++.-..++++|++|++++|++. .+++ +..+.+
T Consensus 41 ~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN 117 (260)
T ss_pred cccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence 3445555555543 3444444556667777777777 444 56655666788888888888763 3333 567777
Q ss_pred CcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecC
Q 048180 588 LQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVS 632 (824)
Q Consensus 588 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 632 (824)
|..|++++|..+..- . ..-.-+.-+++|..|+-....
T Consensus 118 L~~Ldl~n~~~~~l~-----d---yre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLD-----D---YREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccc-----c---HHHHHHHHhhhhccccccccC
Confidence 778888887633311 1 112234445666666654433
No 194
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00025 Score=69.93 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=70.0
Q ss_pred cccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccch-hhhcCCCCCcEEEe
Q 048180 515 LKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPL-HLVTSLHNLQEFSM 593 (824)
Q Consensus 515 l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~-~~l~~L~~L~~L~l 593 (824)
+.+.+.|++.+| .+.++.-+.+++.|++|.|+-|+|+.|- .+..+++|+.|++..|.+.++.. ..+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566677665 3455544667888888888888888773 57788888888888888866532 44678888888888
Q ss_pred ecCccccccccccchhhhhchHhhhcCCCccEEE
Q 048180 594 IGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFD 627 (824)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 627 (824)
..|. ..+. .+......-|.-|++|+.|+
T Consensus 96 ~ENP----Cc~~--ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENP----CCGE--AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCC----cccc--cchhHHHHHHHHcccchhcc
Confidence 8774 1111 12223344566777777765
No 195
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0058 Score=59.53 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+.+.+|||-|.+|.||||+|+.+++.+..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 45789999999999999999999998643
No 196
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.43 E-value=0.02 Score=57.88 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhcccc------ceEEEEEeCCcCCHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHF------NTFIWVEASYEDDLKELQ 150 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~ 150 (824)
..-.++.|+|.+|.|||+||.++....... - ..++|++....++...+.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~----~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLP----GELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcc----cccCCCcceEEEEecCCCCCHHHHH
Confidence 345799999999999999999997764321 2 457899888777765554
No 197
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.41 E-value=0.0029 Score=58.40 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=32.4
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
|-++|.+|+|||+||+.+++.... ...-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-------PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEeccccccccceee
Confidence 568999999999999999998632 2344677888888776653
No 198
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.41 E-value=0.009 Score=57.69 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEE
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWV 138 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv 138 (824)
...+|.++|+.|.||||+|+.+++..... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~----~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK----YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEE
Confidence 45699999999999999999999987543 4444554
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=96.41 E-value=0.017 Score=61.16 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC--CHHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED--DLKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
.+..+|.++|++|+||||++..++..... ..+ .++.+.. +.+ ...+.++.....++..........+....+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~---~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~ 212 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKK---NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAY 212 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHH
Confidence 34789999999999999999988877654 223 2333432 222 2334455666666643322211112222233
Q ss_pred HHHHHHHcCCeEEEEEeCCCc
Q 048180 176 NALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv~~ 196 (824)
+.++..-....=+|++|-.-.
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCc
Confidence 333322222233889998743
No 200
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.40 E-value=0.019 Score=69.44 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhh-hccc-cceEEEEEeCCcCCHHHHHHHH
Q 048180 76 RICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQ-YRSH-FNTFIWVEASYEDDLKELQIKI 153 (824)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~-F~~~~wv~~s~~~~~~~~~~~i 153 (824)
+.++.++.++..+.. ....-+-++|.+|+|||++|+.++...... .... -+..+|. + +...++
T Consensus 183 gr~~ei~~~~~~L~r-------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~--- 247 (821)
T CHL00095 183 GREKEIERVIQILGR-------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL--- 247 (821)
T ss_pred CcHHHHHHHHHHHcc-------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh---
Confidence 445555555544421 122234599999999999999999886431 0111 1245553 1 222211
Q ss_pred HHhcccccCCCcchhhhHHHHHHHHHHHHcCCeEEEEEeCCCccc---------ccchhcCCCCCCCc-EEEEEcCChhh
Q 048180 154 ARKIDFVLSSDESVRDNAILLENALQTLLETGKILLILDNMRKAF---------SLEEIGIPTLSNSL-RIIITSPSSSL 223 (824)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~gs-~IivTTr~~~v 223 (824)
. +... ....+ ..+...+.+.-+.++.+|++|+++... +...+..|.-.+|. ++|.+|.....
T Consensus 248 -a--g~~~--~ge~e---~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey 319 (821)
T CHL00095 248 -A--GTKY--RGEFE---ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEY 319 (821)
T ss_pred -c--cCCC--ccHHH---HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHH
Confidence 1 1110 11112 233333333324578999999986431 11122224334554 66666665544
Q ss_pred hhcc-------ccccccccCCCChHHHHHHHHHH
Q 048180 224 CRQM-------KCRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 224 ~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
.... ....++.+...+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2211 11235678888888888887643
No 201
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.40 E-value=0.04 Score=62.67 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+=+-++|++|.|||++|+.+++..... ++.++. .++..... + .....+.+.+.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~---------~~~i~~----~~~~~~~~---g----------~~~~~l~~~f~ 141 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVP---------FFSISG----SDFVEMFV---G----------VGASRVRDLFE 141 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCC---------eeeccH----HHHHHHHh---c----------ccHHHHHHHHH
Confidence 3457899999999999999998864321 222221 11111110 0 01122334444
Q ss_pred HHHcCCeEEEEEeCCCccc------------ccc----hhc--C-CCCC-CCcEEEEEcCChhh-----hhccccccccc
Q 048180 180 TLLETGKILLILDNMRKAF------------SLE----EIG--I-PTLS-NSLRIIITSPSSSL-----CRQMKCRERFA 234 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~------------~~~----~l~--~-~~~~-~gs~IivTTr~~~v-----~~~~~~~~~~~ 234 (824)
........+|++||++... .+. .+. . .... .+-.||.||..... .+...-+..+.
T Consensus 142 ~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~ 221 (495)
T TIGR01241 142 QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVV 221 (495)
T ss_pred HHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEE
Confidence 3334667899999996531 011 110 0 0112 22355556654332 11112345678
Q ss_pred cCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC
Q 048180 235 LNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL 276 (824)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 276 (824)
+...+.++-.++|..++.......... ...+++.+.|.
T Consensus 222 i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 222 VDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGF 259 (495)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCC
Confidence 888888888888887765432111112 34677777774
No 202
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.39 E-value=0.021 Score=57.60 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKEL 149 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 149 (824)
.-.++-|+|.+|.|||++|.+++...... -..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEECC-CCCHHHH
Confidence 45799999999999999999998876432 3568899876 5555544
No 203
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.013 Score=59.46 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=53.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
|+|-++|++|.|||+|.++.++...++....+....-+.+.. ..++.+...+- ......+.+.+++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsES----------gKlV~kmF~kI~E 243 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSES----------GKLVAKMFQKIQE 243 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhh----------hhHHHHHHHHHHH
Confidence 889999999999999999999998876444454444454432 33444433321 1233445556666
Q ss_pred HHcCCe--EEEEEeCCCc
Q 048180 181 LLETGK--ILLILDNMRK 196 (824)
Q Consensus 181 ~l~~kr--~LlVlDdv~~ 196 (824)
.++.+. +++.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 665554 6677888854
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.0069 Score=61.87 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
+..=+.++|.+|+|||.||.++.+... + ++ + .+.+++ ..+++.++...... ......+...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~g-~-sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K-AG-I-SVLFIT------APDLLSKLKAAFDE--------GRLEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H-cC-C-eEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHh
Confidence 456688999999999999999999986 3 21 2 355554 45666666665432 11112233323
Q ss_pred HHHHcCCeEEEEEeCCCc
Q 048180 179 QTLLETGKILLILDNMRK 196 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~ 196 (824)
.+-=||||||+-.
T Consensus 166 -----~~~dlLIiDDlG~ 178 (254)
T COG1484 166 -----KKVDLLIIDDIGY 178 (254)
T ss_pred -----hcCCEEEEecccC
Confidence 3455899999854
No 205
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.1 Score=55.13 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhh-----------ccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQY-----------RSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVR 168 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 168 (824)
....-++|+.|+||+++|..+.+..-..- ........|+.-....+-..+-.+-+...+.. ......
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~--~~~~~~ 103 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLK--RKAPPQ 103 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccc--cccccc
Confidence 47889999999999999999988764320 01122334443210000000000111111100 000011
Q ss_pred hhHHH---HHHHHHHH-HcCCeEEEEEeCCCccc--ccchh----cCCCCCCCcEEEEEcCChhhhhcc-ccccccccCC
Q 048180 169 DNAIL---LENALQTL-LETGKILLILDNMRKAF--SLEEI----GIPTLSNSLRIIITSPSSSLCRQM-KCRERFALNL 237 (824)
Q Consensus 169 ~~~~~---l~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l----~~~~~~~gs~IivTTr~~~v~~~~-~~~~~~~l~~ 237 (824)
...+. +.+.+... ..+++-++|+|+++... ..+.+ .-|. +.--|++|++-..+.... .....+++.+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp--~~~fILi~~~~~~Ll~TI~SRcq~i~f~~ 181 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG--NGTLILIAPSPESLLPTIVSRCQIIPFYR 181 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC--CCeEEEEECChHhCcHHHHhhceEEecCC
Confidence 11222 32222211 23567789999987664 23333 2232 333445555544444332 2335889999
Q ss_pred CChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 238 LTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
++.++..+.+.+...... ... ....++..++|.|..+..
T Consensus 182 l~~~~~~~~L~~~~~~~~--~~~----~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 182 LSDEQLEQVLKRLGDEEI--LNI----NFPELLALAQGSPGAAIA 220 (314)
T ss_pred CCHHHHHHHHHHhhcccc--chh----HHHHHHHHcCCCHHHHHH
Confidence 999999999887643221 111 135788899999966544
No 206
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.35 E-value=0.073 Score=61.07 Aligned_cols=193 Identities=13% Similarity=0.090 Sum_probs=97.3
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
.+.+|-+++++.+...... ..-...+-++|+.|+||||+|+.+.+..-.. .. ....+++.....+
T Consensus 16 ~~viGq~~v~~~L~~~i~~------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~--~~-------~~~~pC~~C~~C~ 80 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCL--NP-------PDGEPCNECEICK 80 (559)
T ss_pred HhccCcHHHHHHHHHHHHc------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC--CC-------CCCCCCCccHHHH
Confidence 3445555666655544422 1224566789999999999999998765321 00 0011222223333
Q ss_pred HHHHhcccccCC----CcchhhhHHHHHHHHHH-HHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcE-EEEEcCCh
Q 048180 152 KIARKIDFVLSS----DESVRDNAILLENALQT-LLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLR-IIITSPSS 221 (824)
Q Consensus 152 ~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~-IivTTr~~ 221 (824)
.|......+... ....-+....+.+.... -..+++-++|+|+++... .++.+. +..+..... |+.||...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 332221111000 00011112223332221 113566788999998653 344442 111222334 44455544
Q ss_pred hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 048180 222 SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIIT 282 (824)
Q Consensus 222 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 282 (824)
.+.... .....++..+++.++....+...+-..+.... .+....|++.++|-+..+..
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDALS 219 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 443222 22346788899999988888776654332111 24466788888887754433
No 207
>CHL00176 ftsH cell division protein; Validated
Probab=96.34 E-value=0.032 Score=64.57 Aligned_cols=146 Identities=13% Similarity=0.126 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+-|-++|++|.|||++|+++++.... -|+.++.. ++.... .+ .....++..+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~---------p~i~is~s----~f~~~~---~g----------~~~~~vr~lF~ 269 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEV---------PFFSISGS----EFVEMF---VG----------VGAARVRDLFK 269 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC---------CeeeccHH----HHHHHh---hh----------hhHHHHHHHHH
Confidence 456889999999999999999886432 12333211 111100 00 01123344444
Q ss_pred HHHcCCeEEEEEeCCCccc------------c----cchh-cCC--C-CCCCcEEEEEcCChhhhh-c----cccccccc
Q 048180 180 TLLETGKILLILDNMRKAF------------S----LEEI-GIP--T-LSNSLRIIITSPSSSLCR-Q----MKCRERFA 234 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~------------~----~~~l-~~~--~-~~~gs~IivTTr~~~v~~-~----~~~~~~~~ 234 (824)
...+....+|++||++... . +..+ ... . ...+-.||.||....... . ...+..+.
T Consensus 270 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~ 349 (638)
T CHL00176 270 KAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQIT 349 (638)
T ss_pred HHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEE
Confidence 4445788999999996431 1 1111 111 1 122335666665543321 1 12235678
Q ss_pred cCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCC
Q 048180 235 LNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGG 275 (824)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 275 (824)
+...+.++-.++++.++..... .+ ......+++.+.|
T Consensus 350 v~lPd~~~R~~IL~~~l~~~~~--~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 350 VSLPDREGRLDILKVHARNKKL--SP--DVSLELIARRTPG 386 (638)
T ss_pred ECCCCHHHHHHHHHHHHhhccc--ch--hHHHHHHHhcCCC
Confidence 8888888888888887754221 11 1223567777776
No 208
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.28 E-value=0.026 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
||+|.|.+|.||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999998754
No 209
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.0088 Score=63.38 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=28.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEe
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEA 140 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~ 140 (824)
.-+.++|..|+|||+||.++++....+ + ..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g--~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--G--KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--C--CeEEEEEH
Confidence 679999999999999999999987542 2 24566654
No 210
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.23 E-value=0.17 Score=50.34 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...++++..+.++..... -+ ......-+-+||..|.|||++++++.+....
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~-Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQ-FL--QGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred HhcCHHHHHHHHHHHHHH-HH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 455666666666544310 00 1123445668999999999999999998765
No 211
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0047 Score=56.30 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..-|+|.||+|+||||+++.+.+..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 356899999999999999999998876
No 212
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0022 Score=63.31 Aligned_cols=63 Identities=33% Similarity=0.378 Sum_probs=30.6
Q ss_pred cCCCCCcEEEecCC--CC-ccccccccCcccccEEecccccc--cccCCCcccCCCccEEeccCCCCc
Q 048180 490 NSFPNLKILNLSDT--SM-GILPKSLSSLKYLTVLLLQNCIY--LTCLPSLAELVELMVLDVSGSGIA 552 (824)
Q Consensus 490 ~~l~~Lr~L~L~~~--~~-~~lp~~i~~l~~L~~L~L~~c~~--~~~lp~i~~L~~L~~L~l~~~~l~ 552 (824)
..+++|+.|.+++| .+ ..++....++++|++|++++|.. +.+++.+.++.+|..||+..|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 34555566666655 22 33333344445566666655421 223333455555555555555443
No 213
>PRK06696 uridine kinase; Validated
Probab=96.12 E-value=0.0097 Score=59.91 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.4
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+..+|+|.|.+|.||||+|+.+......
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999988743
No 214
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.00063 Score=67.14 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=19.1
Q ss_pred ccCCCCCEEEEecCCCccccccc---hhhhhccccceec
Q 048180 702 PNLQNLKFLEIFNCEGLKYLFKY---GVWCCLRNLEELV 737 (824)
Q Consensus 702 ~~l~~L~~L~L~~c~~l~~l~~~---~~l~~l~~L~~L~ 737 (824)
.++|+|+.|+|..++.+..-++. .++..||+|+.|+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 44566666666655544433221 2455566666664
No 215
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.09 E-value=0.03 Score=56.94 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhh--hccccceEEEEEeCCcCCHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQ--YRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
.-.++.|+|.+|.||||+|.+++-..... +.+.-..++|++....++..++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 45899999999999999999997543211 001125789999888777655433
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.05 E-value=0.037 Score=60.90 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC--HHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD--LKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
....+|.++|.+|+||||.|..++..... ++ + .++-|+.. .+. ..+.++.+..+++..........+....+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~--~g-~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~ 167 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK--KG-L-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAK 167 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH--cC-C-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 45789999999999999999999987754 22 2 23334332 222 345566666666543221111112222233
Q ss_pred HHHHHHHcCCeEEEEEeCC
Q 048180 176 NALQTLLETGKILLILDNM 194 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv 194 (824)
+.++. .++. -+||+|..
T Consensus 168 ~al~~-~~~~-DvVIIDTA 184 (437)
T PRK00771 168 EGLEK-FKKA-DVIIVDTA 184 (437)
T ss_pred HHHHH-hhcC-CEEEEECC
Confidence 33332 2233 56888876
No 217
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.05 E-value=0.03 Score=58.36 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+.++|+|+|++|+||||++..++.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999887643
No 218
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.038 Score=56.61 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=59.6
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
-+.-+++=|+|+.|.||||+|.+++-..... -..++|++.-+.+++..+..--...+..-.-.+...-+....+.+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~aq~~----g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVANAQKP----GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHHhhcC----CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHH
Confidence 3456899999999999999999987764332 447899999999998775543332122111111222222333444
Q ss_pred HHHHHHcCCeEEEEEeCCCc
Q 048180 177 ALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~ 196 (824)
.+......+--|||+|.|-.
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHhccCCCCEEEEecCcc
Confidence 44433333457899988743
No 219
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.04 E-value=0.011 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
||-++|++|.||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999765
No 220
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.04 E-value=0.22 Score=55.80 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=69.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-|-++|++|.|||.+|+.+.+..... | +-+..+ .+.... . .+....+++.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~----~---~~l~~~------~l~~~~---v----------Gese~~l~~~f 311 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP----L---LRLDVG------KLFGGI---V----------GESESRMRQMI 311 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC----E---EEEEhH------Hhcccc---c----------ChHHHHHHHHH
Confidence 45668899999999999999999875321 1 112211 111000 0 00112233333
Q ss_pred HHHHcCCeEEEEEeCCCcccc----c------ch----h-c-CCCCCCCcEEEEEcCChhh-----hhccccccccccCC
Q 048180 179 QTLLETGKILLILDNMRKAFS----L------EE----I-G-IPTLSNSLRIIITSPSSSL-----CRQMKCRERFALNL 237 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~----~------~~----l-~-~~~~~~gs~IivTTr~~~v-----~~~~~~~~~~~l~~ 237 (824)
+..-...+.+|++|+++.... . .. + . ......+--||.||.+..- .+.-..+..+.+..
T Consensus 312 ~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~l 391 (489)
T CHL00195 312 RIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDL 391 (489)
T ss_pred HHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCC
Confidence 333345789999999974311 0 00 0 0 0001112245556654332 11112345778888
Q ss_pred CChHHHHHHHHHHhcCc
Q 048180 238 LTDEEAYLLLINEVGLA 254 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~~~ 254 (824)
.+.++-.++|..+..+.
T Consensus 392 P~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 392 PSLEEREKIFKIHLQKF 408 (489)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 88898889998877543
No 221
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.02 E-value=0.018 Score=60.56 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...+.++|||++|.|||.+|+++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 56789999999999999999999998644
No 222
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.01 E-value=0.0021 Score=73.26 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=68.4
Q ss_pred CcCcceeeecccccceee----ccccCCCCCEEEEecCCC---ccccccchhhhhc-cccceeccccccchhhhhcccCC
Q 048180 682 PWNTSELLLVHCNAVTQM----TIPNLQNLKFLEIFNCEG---LKYLFKYGVWCCL-RNLEELVIANCRNLEKVIEQDDD 753 (824)
Q Consensus 682 ~~~L~~L~l~~~~~~~~~----~l~~l~~L~~L~L~~c~~---l~~l~~~~~l~~l-~~L~~L~l~~~~~l~~i~~~~~~ 753 (824)
.++|++|++++|..+... ...++++|+.|.+..+.. ++.+.-....... ..+..+.+.+|+.++.+.....
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~- 372 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC- 372 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh-
Confidence 355777777777765432 123356655555444433 3333111111111 1566667777776665542111
Q ss_pred CCCCCcccccccC-eEeccCCcch-hccccCcccCCCccEEEecCCCCcCCCCcc-cc-ccccceeccCCCCc
Q 048180 754 ENSNPQVCWRSLR-KLILSNLPEL-RFMYSGEAQCDFVQTIGIWSCCKLERFPIS-LW-VENYAQKLKSPCSL 822 (824)
Q Consensus 754 ~~~~~~~~~p~L~-~L~l~~~~~L-~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~-~~-~l~~L~~L~~~~~~ 822 (824)
.-.... .+.+.+|+.+ ..+......+++|+.|.+..|.....--.. +. .+.++..+++.+|.
T Consensus 373 -------~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 373 -------GISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred -------hccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 111222 4566777766 444333444555888888888765542221 11 15667777777663
No 223
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.00 E-value=0.026 Score=55.85 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=54.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhccc-------ccCCCcc-h----
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDF-------VLSSDES-V---- 167 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~-~---- 167 (824)
.-++|+|..|+|||+|++.+.+.... +..+++.+.+. ..+.++.+++...-.. ...++.. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~------d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA------DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT------TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc------cceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 46889999999999999999987532 34577777665 4455666666443111 1111111 0
Q ss_pred hhhHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 168 RDNAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 168 ~~~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
....-.+.++++. ++|.+|+++||+-
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhH
Confidence 1122334455554 6999999999984
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.96 E-value=0.022 Score=59.91 Aligned_cols=97 Identities=20% Similarity=0.106 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+-+.++|..|+|||.||.++++....+ .+ .+.++++ .+++.++....... . .....+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~---g~-~v~~~~~------~~l~~~lk~~~~~~-----~----~~~~l~~l- 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK---GV-SSTLLHF------PEFIRELKNSISDG-----S----VKEKIDAV- 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc---CC-CEEEEEH------HHHHHHHHHHHhcC-----c----HHHHHHHh-
Confidence 4678899999999999999999997542 22 3556654 35556665543211 1 11222223
Q ss_pred HHHcCCeEEEEEeCCCcc--cccch--hcCCC---C-CCCcEEEEEcCC
Q 048180 180 TLLETGKILLILDNMRKA--FSLEE--IGIPT---L-SNSLRIIITSPS 220 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~--~~~~~--l~~~~---~-~~gs~IivTTr~ 220 (824)
.+-=||||||+-.. .+|.. +..+. . ..+-.+|+||--
T Consensus 216 ----~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 216 ----KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ----cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 46679999998543 45643 21111 1 234467777753
No 225
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.94 E-value=0.087 Score=55.73 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+..+|+++|++|+||||++..++.....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 45789999999999999999999988754
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.93 E-value=0.071 Score=64.74 Aligned_cols=134 Identities=18% Similarity=0.172 Sum_probs=69.2
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhc-cc-cceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYR-SH-FNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
-+-++|.+|+|||++|+.+..+...... .. ....+|.. ++..++ . +... .. +....+...+.
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----a--~~~~--~g---~~e~~l~~~l~ 259 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----A--GAKY--RG---EFEERLKAVLN 259 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----h--cchh--hh---hHHHHHHHHHH
Confidence 3448999999999999999987633100 00 12334331 111111 0 0000 01 11122333333
Q ss_pred HHHc-CCeEEEEEeCCCcccc---------cchhcCCCCCCCc-EEEEEcCChhhhhcc-------ccccccccCCCChH
Q 048180 180 TLLE-TGKILLILDNMRKAFS---------LEEIGIPTLSNSL-RIIITSPSSSLCRQM-------KCRERFALNLLTDE 241 (824)
Q Consensus 180 ~~l~-~kr~LlVlDdv~~~~~---------~~~l~~~~~~~gs-~IivTTr~~~v~~~~-------~~~~~~~l~~L~~~ 241 (824)
+.-+ +++.+|++|+++.... ...+..|....|. ++|-+|........+ ..-..+.+...+.+
T Consensus 260 ~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~ 339 (852)
T TIGR03346 260 EVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVE 339 (852)
T ss_pred HHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHH
Confidence 2222 4689999999875421 1122234444555 666555544432111 11235778888999
Q ss_pred HHHHHHHHHh
Q 048180 242 EAYLLLINEV 251 (824)
Q Consensus 242 ~~~~Lf~~~~ 251 (824)
+...++....
T Consensus 340 ~~~~iL~~~~ 349 (852)
T TIGR03346 340 DTISILRGLK 349 (852)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 227
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.11 Score=54.79 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCeEEEEEeCCCcccc--cchh-c-CCCCCCCcEEEEEcC-Chhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAFS--LEEI-G-IPTLSNSLRIIITSP-SSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~~--~~~l-~-~~~~~~gs~IivTTr-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++=++|+|+++.... -+.+ + +-.+..++.+|++|. ...+.... .....+.+.+++.+++.+.+... +
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~----- 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G----- 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-----
Confidence 5667899999987642 2222 1 222334565555554 44444332 22357888999999888777643 1
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
.+ +..+..++..++|.|+.+..+.
T Consensus 186 ~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1225677899999998765443
No 228
>PRK04296 thymidine kinase; Provisional
Probab=95.91 E-value=0.012 Score=57.48 Aligned_cols=113 Identities=8% Similarity=-0.057 Sum_probs=60.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.++-|+|..|.||||+|.....+.... -..++.+ ...++.......++.+++...... .......+.+.+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~----g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~--~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER----GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAI--PVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc----CCeEEEE--eccccccccCCcEecCCCCcccce--EeCChHHHHHHHHh
Confidence 477899999999999999998876542 2223333 122232333444556655322210 01122333344433
Q ss_pred HHcCCeEEEEEeCCCcc--cccchhcCCCCCCCcEEEEEcCChh
Q 048180 181 LLETGKILLILDNMRKA--FSLEEIGIPTLSNSLRIIITSPSSS 222 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~gs~IivTTr~~~ 222 (824)
..++.-+||+|.+.-. ++...+.......|-.||+|.++..
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 2345569999998432 2222221112346778999988744
No 229
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.87 E-value=0.04 Score=60.09 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
....||.++|..|+||||+|..++.....
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999876643
No 230
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.85 E-value=0.048 Score=54.73 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD 145 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 145 (824)
.-+++.|+|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~----g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ----GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEECCCCCH
Confidence 45899999999999999999998876432 23577887655543
No 231
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.83 E-value=0.052 Score=59.61 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+..+|.++|.+|+||||.|..++....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999998887754
No 232
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.82 E-value=0.021 Score=64.19 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=54.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
..-+|.-++|++|+||||||..|+++.. | .++=|..|+.-....+-..|...+....-...
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG------Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG------Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC------c-eEEEecccccccHHHHHHHHHHHHhhcccccc------------
Confidence 4568999999999999999999988631 2 46777888887777777777665543221100
Q ss_pred HHHHHcCCeEEEEEeCCCccc
Q 048180 178 LQTLLETGKILLILDNMRKAF 198 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~ 198 (824)
.++..-||+|.++-..
T Consensus 385 -----dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 -----DSRPVCLVIDEIDGAP 400 (877)
T ss_pred -----CCCcceEEEecccCCc
Confidence 1567778999987653
No 233
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.042 Score=58.98 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC-cCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY-EDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
.-.++.++|+.|+||||++.++......+ .....+..++... .....+-++...+.++..........+ +...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~--~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~----l~~~ 209 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR--FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD----LQLA 209 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc----HHHH
Confidence 34799999999999999999999876432 1112345554322 223455555555655543322111111 2222
Q ss_pred HHHHHcCCeEEEEEeCCC
Q 048180 178 LQTLLETGKILLILDNMR 195 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~ 195 (824)
+. .+.++ =+|++|..-
T Consensus 210 l~-~l~~~-DlVLIDTaG 225 (374)
T PRK14722 210 LA-ELRNK-HMVLIDTIG 225 (374)
T ss_pred HH-HhcCC-CEEEEcCCC
Confidence 22 22344 556689874
No 234
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.81 E-value=0.037 Score=60.42 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhccccc------CCCcc--hh-
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFVL------SSDES--VR- 168 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~--~~- 168 (824)
.-..++|+|..|+|||||++.+++... -+..+.+-+.+... +.++..+.+..-+... ..+.. ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~------~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD------ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC------CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 346889999999999999999987642 23455565655543 4455555554322110 01111 11
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.+++++ +++.+|+++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd--~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRD--QGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHH--CCCcEEEEEeCcHH
Confidence 122234445543 48999999999844
No 235
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.80 E-value=0.089 Score=63.23 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
-+++.++|++|+|||++|+.+++...
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999999864
No 236
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.79 E-value=0.025 Score=53.25 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHHHcCCeEEEEEeC----CCcccccchhc--CCCCCCCcEEEEEcCChhhhhccc
Q 048180 178 LQTLLETGKILLILDN----MRKAFSLEEIG--IPTLSNSLRIIITSPSSSLCRQMK 228 (824)
Q Consensus 178 l~~~l~~kr~LlVlDd----v~~~~~~~~l~--~~~~~~gs~IivTTr~~~v~~~~~ 228 (824)
+.+.+-++.-+++-|. ++-...|+-+. ..++..|.-|+++|-+..+.+.+.
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3444448899999994 56555676543 234567899999999998887663
No 237
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.76 E-value=0.029 Score=58.87 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccC-----CCcchhhhHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLS-----SDESVRDNAI 172 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 172 (824)
..-+++-|+|++|+||||||.++....... -..++||...+.++.. .+++++.+.. .....++..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~----g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l- 122 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQAL- 122 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHH-
Confidence 345799999999999999999987765432 3457888777666553 3444443221 111122222
Q ss_pred HHHHHHHHHH-cCCeEEEEEeCCC
Q 048180 173 LLENALQTLL-ETGKILLILDNMR 195 (824)
Q Consensus 173 ~l~~~l~~~l-~~kr~LlVlDdv~ 195 (824)
..+...+ ++.--+||+|-|-
T Consensus 123 ---~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 123 ---EIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred ---HHHHHHhhccCCcEEEEcchh
Confidence 2222223 2456799999875
No 238
>PRK10867 signal recognition particle protein; Provisional
Probab=95.72 E-value=0.059 Score=59.20 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=25.0
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.....||.++|.+|+||||.|..++.....
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 345789999999999999998888876644
No 239
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.029 Score=62.86 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=48.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.-|-|.|..|+|||+||+++++.... .+.-.+..|+.+.-.. ...+.....+...+.+
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k---~~~~hv~~v~Cs~l~~-------------------~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSK---DLIAHVEIVSCSTLDG-------------------SSLEKIQKFLNNVFSE 489 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhcc---ccceEEEEEechhccc-------------------hhHHHHHHHHHHHHHH
Confidence 45779999999999999999998753 3333345555443211 1112222344555566
Q ss_pred HHcCCeEEEEEeCCCc
Q 048180 181 LLETGKILLILDNMRK 196 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~ 196 (824)
.+.--.-+|||||++-
T Consensus 490 ~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHhhCCcEEEEcchhh
Confidence 6668899999999863
No 240
>PRK06526 transposase; Provisional
Probab=95.69 E-value=0.026 Score=57.60 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.-+.++|++|+|||+||..+.+....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 45889999999999999999987643
No 241
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.69 E-value=0.011 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.783 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999875
No 242
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.68 E-value=0.076 Score=54.13 Aligned_cols=96 Identities=10% Similarity=0.092 Sum_probs=56.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH-hhhccccceEEEEEeCCcCC-HHHHHHHHHHhccccc------CCCcc--hhhh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL-NQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFVL------SSDES--VRDN 170 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~--~~~~ 170 (824)
.-++|+|-.|+|||||+..+.+... .+ +++-+.++++-+.+... ..++..++...-..+. ..++. ....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~-~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVG-EEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccc-cCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 4679999999999999999887753 11 22346788888877654 5566666655321110 01111 1111
Q ss_pred HHHHHHHHHHHH---cCCeEEEEEeCCCcc
Q 048180 171 AILLENALQTLL---ETGKILLILDNMRKA 197 (824)
Q Consensus 171 ~~~l~~~l~~~l---~~kr~LlVlDdv~~~ 197 (824)
.-...-.+.+++ ++|++|+|+||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 222222333443 278999999998544
No 243
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.66 E-value=0.031 Score=58.68 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccC-----CCcchhhhHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLS-----SDESVRDNAIL 173 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 173 (824)
.-+++-|+|++|+||||||.+++...... -..++||+..+.++.. .+++++.+.. ...+.++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~----g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq---- 120 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL----GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQ---- 120 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHH----
Confidence 45788899999999999999988765332 3467899887776653 3444443221 1111222
Q ss_pred HHHHHHHHHc-CCeEEEEEeCCC
Q 048180 174 LENALQTLLE-TGKILLILDNMR 195 (824)
Q Consensus 174 l~~~l~~~l~-~kr~LlVlDdv~ 195 (824)
....+...++ +.--+||+|-|-
T Consensus 121 ~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 121 ALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHHHhccCCCEEEEcchH
Confidence 2222322332 456799999874
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.65 E-value=0.024 Score=54.62 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=43.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.-+.++|..|+|||.||.++.+....+ + + .+.|+. ..+++..+-..- .. .. ...+.+.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~--g-~-~v~f~~------~~~L~~~l~~~~----~~-~~----~~~~~~~l-- 106 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK--G-Y-SVLFIT------ASDLLDELKQSR----SD-GS----YEELLKRL-- 106 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T----EEEEE------HHHHHHHHHCCH----CC-TT----HCHHHHHH--
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC--C-c-ceeEee------cCceeccccccc----cc-cc----hhhhcCcc--
Confidence 568999999999999999999886542 2 2 356664 345555553321 11 11 11223333
Q ss_pred HHcCCeEEEEEeCCCcc
Q 048180 181 LLETGKILLILDNMRKA 197 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~ 197 (824)
.+-=||||||+-..
T Consensus 107 ---~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 107 ---KRVDLLILDDLGYE 120 (178)
T ss_dssp ---HTSSCEEEETCTSS
T ss_pred ---ccccEeccccccee
Confidence 24568889998544
No 245
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.64 E-value=0.061 Score=65.05 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=67.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhh-ccc-cceEEEE-EeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQY-RSH-FNTFIWV-EASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~-F~~~~wv-~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
-+-++|.+|+||||+|+.+........ ... ....+|. .++. ++.. . ......+ ..++..+
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ag----~----~~~g~~e---~~lk~~~ 263 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVAG----A----KYRGEFE---ERLKGVL 263 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhhc----c----chhhhhH---HHHHHHH
Confidence 455999999999999999998763210 000 1223322 2211 1100 0 0001111 2222223
Q ss_pred HHHH-cCCeEEEEEeCCCccc---------ccchhcCCCCCCCc-EEEEEcCChhhhhcc-------ccccccccCCCCh
Q 048180 179 QTLL-ETGKILLILDNMRKAF---------SLEEIGIPTLSNSL-RIIITSPSSSLCRQM-------KCRERFALNLLTD 240 (824)
Q Consensus 179 ~~~l-~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~gs-~IivTTr~~~v~~~~-------~~~~~~~l~~L~~ 240 (824)
.+.- .+++.+|++|+++... +-..+..|...+|- ++|-||........+ ..-..+.+...+.
T Consensus 264 ~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~ 343 (857)
T PRK10865 264 NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV 343 (857)
T ss_pred HHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCH
Confidence 2211 2578999999987552 11223244445565 666665554432111 1112455666688
Q ss_pred HHHHHHHHHHh
Q 048180 241 EEAYLLLINEV 251 (824)
Q Consensus 241 ~~~~~Lf~~~~ 251 (824)
++...++....
T Consensus 344 ~~~~~iL~~l~ 354 (857)
T PRK10865 344 EDTIAILRGLK 354 (857)
T ss_pred HHHHHHHHHHh
Confidence 88888876544
No 246
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.2 Score=52.97 Aligned_cols=164 Identities=8% Similarity=0.013 Sum_probs=86.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccC---CCcchhhhHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLS---SDESVRDNAILLEN 176 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 176 (824)
...+-+.|+.|+||+++|+.+....--. .... ...++.-..-+.+...-..+.. ........++++++
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~--~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~ 94 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQ--TPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVRE 94 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCC--CCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHH
Confidence 3567789999999999999999876431 1000 0112222222222221111000 00011123344443
Q ss_pred ---HHHH-HHcCCeEEEEEeCCCccc--ccchh-c-CCCCCCCcEEEEEcCC-hhhhhcc-ccccccccCCCChHHHHHH
Q 048180 177 ---ALQT-LLETGKILLILDNMRKAF--SLEEI-G-IPTLSNSLRIIITSPS-SSLCRQM-KCRERFALNLLTDEEAYLL 246 (824)
Q Consensus 177 ---~l~~-~l~~kr~LlVlDdv~~~~--~~~~l-~-~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~L 246 (824)
.+.. -..+++=++|+|+++.+. ..+.+ + +--+..+..+|++|.+ ..+.... .....+.+.+++.++..+.
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~ 174 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDW 174 (325)
T ss_pred HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHH
Confidence 2211 113566688899998764 33333 1 2223345555555544 4444332 2235789999999999888
Q ss_pred HHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 247 LINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
+...... .. ..+...+..++|.|..+
T Consensus 175 L~~~~~~-----~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 175 LQAQSSA-----EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHhcc-----Ch---HHHHHHHHHcCCCHHHH
Confidence 7765321 11 12456678899999644
No 247
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.62 E-value=0.066 Score=57.06 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhc-c-ccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYR-S-HFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
.-.++-|+|.+|+|||++|.+++........ . .=..++||+....|++.++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 4578999999999999999999866422100 0 013689999988888877654 444444
No 248
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.62 E-value=0.01 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.672 Sum_probs=20.3
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 249
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.61 E-value=0.013 Score=69.07 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=69.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHhh-hccc-cceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILNQ-YRSH-FNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~~-~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+-++|.+|+|||++|+.+++..... +... .++.+|.. +...+ +. +.. .....+.....+.+.++
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G~~--~~Ge~e~rl~~l~~~l~- 275 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--GTK--YRGDFEKRFKALLKQLE- 275 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--ccc--hhhhHHHHHHHHHHHHH-
Confidence 3589999999999999999875331 0111 24555531 11111 11 000 00111222222333232
Q ss_pred HHcCCeEEEEEeCCCcc--------cc--cchhcCCCCCCCc-EEEEEcCChhhhhcc-------ccccccccCCCChHH
Q 048180 181 LLETGKILLILDNMRKA--------FS--LEEIGIPTLSNSL-RIIITSPSSSLCRQM-------KCRERFALNLLTDEE 242 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~--------~~--~~~l~~~~~~~gs-~IivTTr~~~v~~~~-------~~~~~~~l~~L~~~~ 242 (824)
+.+..+|++|+++.. .+ ...+..|....|. +||-+|...+....+ ..-..+.+++++.++
T Consensus 276 --~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~ 353 (758)
T PRK11034 276 --QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEE 353 (758)
T ss_pred --hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHH
Confidence 356789999999743 11 1112233334555 555555444322111 111468899999999
Q ss_pred HHHHHHHHh
Q 048180 243 AYLLLINEV 251 (824)
Q Consensus 243 ~~~Lf~~~~ 251 (824)
..+++....
T Consensus 354 ~~~IL~~~~ 362 (758)
T PRK11034 354 TVQIINGLK 362 (758)
T ss_pred HHHHHHHHH
Confidence 999987654
No 250
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.76 Score=51.80 Aligned_cols=184 Identities=14% Similarity=0.077 Sum_probs=91.2
Q ss_pred ccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 96 YNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 96 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
+-...+=|-.+|++|.||||+|+++++..... | +.++.+ +++.... .+....++
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n----F-----lsvkgp----EL~sk~v-------------GeSEr~ir 517 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMN----F-----LSVKGP----ELFSKYV-------------GESERAIR 517 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcCC----e-----eeccCH----HHHHHhc-------------CchHHHHH
Confidence 34567888899999999999999999985432 3 333322 1111110 01112233
Q ss_pred HHHHHHHcCCeEEEEEeCCCcccc-------------cchh-c--CCCCCCCcEEEE--EcCChhhh-hccc---ccccc
Q 048180 176 NALQTLLETGKILLILDNMRKAFS-------------LEEI-G--IPTLSNSLRIII--TSPSSSLC-RQMK---CRERF 233 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l-~--~~~~~~gs~Iiv--TTr~~~v~-~~~~---~~~~~ 233 (824)
+.+++.=+--..+|.||.++...- +..+ . .-....+..+|| |.|-..+- ..+. .++.+
T Consensus 518 ~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~ii 597 (693)
T KOG0730|consen 518 EVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRII 597 (693)
T ss_pred HHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeE
Confidence 333322234457888887754311 1111 0 111112233333 44443332 1222 34566
Q ss_pred ccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHH--------HHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 048180 234 ALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLK--------NIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSE 305 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~--------~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~ 305 (824)
.++.-+.+--.++|+.++-+....+.-+++++++ +|+..|.+--+ . .+++...-+.-.|++..+.+
T Consensus 598 yVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~--~----a~~e~i~a~~i~~~hf~~al 671 (693)
T KOG0730|consen 598 YVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAAL--L----ALRESIEATEITWQHFEEAL 671 (693)
T ss_pred eecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHH--H----HHHHhcccccccHHHHHHHH
Confidence 6777777777889998886554333344555433 44444433211 0 11211223455677766665
Q ss_pred HhhccC
Q 048180 306 LDAFSS 311 (824)
Q Consensus 306 ~~~~~~ 311 (824)
.....+
T Consensus 672 ~~~r~s 677 (693)
T KOG0730|consen 672 KAVRPS 677 (693)
T ss_pred Hhhccc
Confidence 544433
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=95.57 E-value=0.061 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
..+.|+|+.|+|||+||..+.+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999987754
No 252
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.51 Score=49.81 Aligned_cols=162 Identities=12% Similarity=0.056 Sum_probs=85.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc---CCC-cchhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL---SSD-ESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~~~-~~~~~~~~~l~ 175 (824)
...+-++|+.|+||+++|+.+....--. +.- ...++.-..-+.+...-..+. ... ......+++++
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~--~~~--------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR 94 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQ--NYQ--------SEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIR 94 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCC--CCC--------CCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHH
Confidence 4578899999999999999998865331 100 001111111122211111000 000 00112233333
Q ss_pred HHHHHHH-----cCCeEEEEEeCCCccc--ccchh-c-CCCCCCCcEEE-EEcCChhhhhcc-ccccccccCCCChHHHH
Q 048180 176 NALQTLL-----ETGKILLILDNMRKAF--SLEEI-G-IPTLSNSLRII-ITSPSSSLCRQM-KCRERFALNLLTDEEAY 244 (824)
Q Consensus 176 ~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l-~-~~~~~~gs~Ii-vTTr~~~v~~~~-~~~~~~~l~~L~~~~~~ 244 (824)
+. .+.+ .+++=++|+|+++... ..+.+ + +--+..++.+| +|++-..+.... ..-..+.+.+++.+++.
T Consensus 95 ~l-~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~ 173 (319)
T PRK06090 95 QC-NRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAM 173 (319)
T ss_pred HH-HHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHH
Confidence 21 1121 2445578899988764 34443 1 22233456444 455544554433 22357889999999998
Q ss_pred HHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 245 LLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 245 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
+.+.... .+ .+..++..++|.|+.+..+
T Consensus 174 ~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 174 QWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 8775431 11 1356788999999876554
No 253
>PTZ00301 uridine kinase; Provisional
Probab=95.53 E-value=0.022 Score=56.34 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+|||.|.+|.||||||+.+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 479999999999999999999887643
No 254
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.023 Score=54.60 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999984
No 255
>PRK09354 recA recombinase A; Provisional
Probab=95.52 E-value=0.042 Score=58.21 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccC-----CCcchhhhHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLS-----SDESVRDNAI 172 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 172 (824)
..-+++=|+|++|.||||||.++....... -..++||..-+.++.. .+++++.+.. .....++...
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~ 128 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALE 128 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 345799999999999999999988765332 3467899888777753 3455543221 1112222222
Q ss_pred HHHHHHHHHH-cCCeEEEEEeCCC
Q 048180 173 LLENALQTLL-ETGKILLILDNMR 195 (824)
Q Consensus 173 ~l~~~l~~~l-~~kr~LlVlDdv~ 195 (824)
.+...+ +++--+||+|-|-
T Consensus 129 ----i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 129 ----IADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ----HHHHHhhcCCCCEEEEeChh
Confidence 222223 2456799999875
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.19 Score=55.63 Aligned_cols=74 Identities=11% Similarity=0.193 Sum_probs=49.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+=|-++|++|.|||.||+++++...+- ++.++.+ +|+.+.. .+....+++.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vP---------f~~isAp--------eivSGvS---------GESEkkiRel 274 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVP---------FLSISAP--------EIVSGVS---------GESEKKIREL 274 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCc---------eEeecch--------hhhcccC---------cccHHHHHHH
Confidence 456778899999999999999999987552 2333322 2222221 1122445555
Q ss_pred HHHHHcCCeEEEEEeCCCcc
Q 048180 178 LQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~ 197 (824)
+.+....-.+++++|+++-.
T Consensus 275 F~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 275 FDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred HHHHhccCCeEEEeeccccc
Confidence 66666678899999998643
No 257
>PRK04132 replication factor C small subunit; Provisional
Probab=95.49 E-value=0.28 Score=58.29 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCChHhHHHHHHHHHHHhhhccccc-eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHHHcCCe
Q 048180 108 ASGVGKTEAGAHVYNRILNQYRSHFN-TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTLLETGK 186 (824)
Q Consensus 108 ~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr 186 (824)
+-++||||+|.+++++.-. +.++ ..+-+..|+..+.. .+++++..+...... . ..+.
T Consensus 574 Ph~lGKTT~A~ala~~l~g---~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~---~~~~ 631 (846)
T PRK04132 574 PTVLHNTTAALALARELFG---ENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------G---GASF 631 (846)
T ss_pred CCcccHHHHHHHHHHhhhc---ccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------C---CCCC
Confidence 7789999999999998522 1121 34555666544443 333333322110000 0 1255
Q ss_pred EEEEEeCCCccc--ccchhcC--CCCCCCcEEEE-EcCChhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCCCch
Q 048180 187 ILLILDNMRKAF--SLEEIGI--PTLSNSLRIII-TSPSSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKVLEG 260 (824)
Q Consensus 187 ~LlVlDdv~~~~--~~~~l~~--~~~~~gs~Iiv-TTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 260 (824)
-++|+|+++... +.+.+.- -......++|. |+....+.... .....+.+.+++.++..+.+.+.+...+-..+
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~- 710 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT- 710 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC-
Confidence 799999998774 4444421 11223445555 44444443222 22358899999999988887766543331112
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 261 EIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 261 ~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
++....|++.++|-+..+..+-.
T Consensus 711 --~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 711 --EEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHH
Confidence 34567899999998855444333
No 258
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.49 E-value=0.014 Score=58.07 Aligned_cols=28 Identities=29% Similarity=0.659 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
+.-.+|+|+|++|.||||||+.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4558999999999999999999988653
No 259
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.48 E-value=0.16 Score=48.04 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...+-++|..|+||+|+|..+.+..-.
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~ 45 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLC 45 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 456789999999999999999886543
No 260
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.47 E-value=0.012 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+|+|.|..|.||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 261
>PRK08233 hypothetical protein; Provisional
Probab=95.47 E-value=0.012 Score=57.02 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|+|.|.+|.||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998865
No 262
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.43 E-value=0.1 Score=48.69 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=60.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEE---eCCcCCHHHHHHHHHHhcc-----ccc--CCCc--chh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVE---ASYEDDLKELQIKIARKID-----FVL--SSDE--SVR 168 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l~-----~~~--~~~~--~~~ 168 (824)
.+|-|++-.|-||||+|....-+...+ + + .+.+|- -........+++.+ ..+. ... .... ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g-~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--G-Y-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--C-C-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHH
Confidence 467788889999999999988776542 1 2 233332 22234444555444 1111 100 0011 111
Q ss_pred hhHHHHHHHHHHHHcCCe-EEEEEeCCCccccc-----chhc--CCCCCCCcEEEEEcCCh
Q 048180 169 DNAILLENALQTLLETGK-ILLILDNMRKAFSL-----EEIG--IPTLSNSLRIIITSPSS 221 (824)
Q Consensus 169 ~~~~~l~~~l~~~l~~kr-~LlVlDdv~~~~~~-----~~l~--~~~~~~gs~IivTTr~~ 221 (824)
.......+..++.+.... =|||||++-..-.+ +.+. +.....+.-||+|.|+.
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333344445554544 59999998544222 2221 11222445899999984
No 263
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.43 E-value=0.02 Score=56.31 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=56.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHH-HHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLK-ELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+|.|+|+.|.||||++..+....... ....+++- .++.... .-...+..|-. .. .+. ....+.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~----~~~~i~t~-e~~~E~~~~~~~~~i~q~~--vg--~~~----~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN----KTHHILTI-EDPIEFVHESKRSLINQRE--VG--LDT----LSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc----CCcEEEEE-cCCccccccCccceeeecc--cC--CCc----cCHHHHHH
Confidence 378999999999999999887765431 23334332 1111100 00001111100 00 011 12334455
Q ss_pred HHHcCCeEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhh
Q 048180 180 TLLETGKILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLC 224 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~ 224 (824)
..++...=.|++|.+.+.+.+..... ....|..++.|+-...++
T Consensus 69 ~aLr~~pd~ii~gEird~e~~~~~l~-~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 69 AALRQDPDVILVGEMRDLETIRLALT-AAETGHLVMSTLHTNSAA 112 (198)
T ss_pred HHhcCCcCEEEEcCCCCHHHHHHHHH-HHHcCCEEEEEecCCcHH
Confidence 55556677999999987765443211 112455677777655444
No 264
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.42 E-value=0.025 Score=56.07 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=37.5
Q ss_pred CCCccEEEcCCCCCcccCCh---hhhcCCCCCcEEEecCCCC----ccccc-------cccCcccccEEecccccccccC
Q 048180 467 FCKLTTLFLQGNPLDLQLDN---DFFNSFPNLKILNLSDTSM----GILPK-------SLSSLKYLTVLLLQNCIYLTCL 532 (824)
Q Consensus 467 ~~~L~~L~l~~~~~~~~~~~---~~~~~l~~Lr~L~L~~~~~----~~lp~-------~i~~l~~L~~L~L~~c~~~~~l 532 (824)
+..+..++++||.+-..... ..+.+-++|++.++++.-. .++|+ .+-+|++|+..+|+.|..-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 44556666666643221111 1123445566666555432 22222 2334555555555554333333
Q ss_pred C-C----cccCCCccEEeccCCCC
Q 048180 533 P-S----LAELVELMVLDVSGSGI 551 (824)
Q Consensus 533 p-~----i~~L~~L~~L~l~~~~l 551 (824)
| . |++-..|.+|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 2 1 34445555555555533
No 265
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.41 E-value=0.02 Score=59.87 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=23.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|+|-||+||||+|..+......
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE 27 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999888754
No 266
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.40 E-value=0.011 Score=56.46 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+|.|.|.+|.||||+|..+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999997653
No 267
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.40 E-value=0.022 Score=59.98 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=26.2
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+++.+||++.|-||+||||+|..+..-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 456799999999999999999998887754
No 268
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.25 Score=52.69 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCccc--ccchhc--CCCCCCCcE-EEEEcCChhhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAF--SLEEIG--IPTLSNSLR-IIITSPSSSLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~-IivTTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++=++|+|+++... .++.+. +--+..++. |++|++-..+.... .....+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~------ 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG------ 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC------
Confidence 455588899998764 344441 223344554 45555545554332 223578899999999988886641
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.++ ...++..++|.|..+..+
T Consensus 205 ~~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 VAD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred CCh-----HHHHHHHcCCCHHHHHHH
Confidence 111 123567889999755443
No 269
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.37 E-value=0.039 Score=56.77 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=40.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+.|.|+|.+|.||||+|+++....... ..+ +.+|+ .. .+. + .. ........+......++..+.+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~---~~~-v~~i~--~~----~~~--~-~~--~~y~~~~~Ek~~R~~l~s~v~r 66 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK---GKE-VVIIS--DD----SLG--I-DR--NDYADSKKEKEARGSLKSAVER 66 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT---T---EEEE---TH----HHH----TT--SSS--GGGHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc---CCE-EEEEc--cc----ccc--c-ch--hhhhchhhhHHHHHHHHHHHHH
Confidence 468899999999999999999987542 122 23332 11 111 1 10 0011122233344556666666
Q ss_pred HHcCCeEEEEEeCCCcc
Q 048180 181 LLETGKILLILDNMRKA 197 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~ 197 (824)
.+ ++..+||+||....
T Consensus 67 ~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 67 AL-SKDTIVILDDNNYI 82 (270)
T ss_dssp HH-TT-SEEEE-S---S
T ss_pred hh-ccCeEEEEeCCchH
Confidence 66 55688899998644
No 270
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.37 E-value=0.092 Score=57.95 Aligned_cols=93 Identities=22% Similarity=0.257 Sum_probs=57.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhccccc------CCCcc--hhhhH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFVL------SSDES--VRDNA 171 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~--~~~~~ 171 (824)
.-++|+|..|+|||||+..+.+.... .+-+.++++-+.+... +.++..++...-.... ..+.+ .....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~---~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK---QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh---hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 57899999999999999999887653 2457778887765543 4566666654321100 00111 11122
Q ss_pred HHHHHHHHHHH---cCCeEEEEEeCCCc
Q 048180 172 ILLENALQTLL---ETGKILLILDNMRK 196 (824)
Q Consensus 172 ~~l~~~l~~~l---~~kr~LlVlDdv~~ 196 (824)
....-.+.+++ ++|++|+++||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 22333344444 38999999999843
No 271
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.36 E-value=0.041 Score=60.19 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhc-----ccccCCCcchh------
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKI-----DFVLSSDESVR------ 168 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~------ 168 (824)
-..++|+|..|.|||||++.+...... ...+++..--...++.++....+... ..-...++...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p-----d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF-----DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-----CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 357999999999999999888654221 22344443323344444444333322 11111111111
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.++++. +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd--~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRD--RGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHH--cCCCEEEeccchHH
Confidence 122334445543 48999999999844
No 272
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.34 E-value=0.067 Score=59.48 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=49.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEE-EeCCcC-CHHHHHHHHHHhccccc-CCCcchhhhHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWV-EASYED-DLKELQIKIARKIDFVL-SSDESVRDNAILLENA 177 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv-~~s~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~ 177 (824)
.-..|+|.+|.|||||++.|.+.... .+=++.++| -|.+.. .+.++.+.+-.++-... +...........+.-.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~---n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT---NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh---cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999997643 222344334 343332 23334333311111111 1111111122222222
Q ss_pred HHHHH--cCCeEEEEEeCCCc
Q 048180 178 LQTLL--ETGKILLILDNMRK 196 (824)
Q Consensus 178 l~~~l--~~kr~LlVlDdv~~ 196 (824)
+.+++ .++.+||++|++-.
T Consensus 494 ~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchH
Confidence 23333 58999999999854
No 273
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.33 E-value=0.05 Score=49.20 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=19.8
Q ss_pred cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEee
Q 048180 535 LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMI 594 (824)
Q Consensus 535 i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~ 594 (824)
+.++.+|+.+.+.. .+..++.. +.++++|+.+.+..+ +..++...+.+. +|+.+.+.
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred eecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 44444444444433 33333322 233445555554432 333433444444 55555443
No 274
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.34 Score=51.82 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc--CCCcchhhhHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL--SSDESVRDNAILLENA 177 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~ 177 (824)
....-++|+.|+||||+|+.+.+..-.. +.... ..++.-...+.+...-..+. ..........+++++.
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~--~~~~~-------~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l 98 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCL--ERNGV-------EPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYL 98 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCC--CCCCC-------CCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHH
Confidence 4567899999999999999998875321 10000 00111111111111000000 0000001112223222
Q ss_pred HHHH----HcCCeEEEEEeCCCcccc--cchhc--CCCCCCCcEEEEEcCC-hhhhhcc-ccccccccCCCChHHHHHHH
Q 048180 178 LQTL----LETGKILLILDNMRKAFS--LEEIG--IPTLSNSLRIIITSPS-SSLCRQM-KCRERFALNLLTDEEAYLLL 247 (824)
Q Consensus 178 l~~~----l~~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf 247 (824)
.... ..+++=++|+|+++.... .+.+. +.-+..++.+|++|.+ ..+.... .....+++.+++.++..+.+
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRL 178 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHH
Confidence 2111 124556789999876642 33331 2223345666656554 3333322 22357899999999987777
Q ss_pred HH
Q 048180 248 IN 249 (824)
Q Consensus 248 ~~ 249 (824)
..
T Consensus 179 ~~ 180 (329)
T PRK08058 179 QE 180 (329)
T ss_pred HH
Confidence 54
No 275
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.22 Score=53.54 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=77.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
|=--++|++|.||||+..+++|... |+..- ...+...+-.+ ++.++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~------ydIyd-LeLt~v~~n~d-Lr~LL~~------------------------ 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN------YDIYD-LELTEVKLDSD-LRHLLLA------------------------ 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC------CceEE-eeeccccCcHH-HHHHHHh------------------------
Confidence 3355899999999999999999752 44321 12222111111 2222211
Q ss_pred HHcCCeEEEEEeCCCccccc-----------c----hhc------C---CCCCCCc-EEEE-EcCChhhhh--ccc---c
Q 048180 181 LLETGKILLILDNMRKAFSL-----------E----EIG------I---PTLSNSL-RIII-TSPSSSLCR--QMK---C 229 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~~~-----------~----~l~------~---~~~~~gs-~Iiv-TTr~~~v~~--~~~---~ 229 (824)
...|-+||+.|++...+. + .+. + .+...|. |||| ||-..+-.. .+. .
T Consensus 284 --t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 284 --TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred --CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcc
Confidence 145677888888644211 1 010 0 1122333 7766 665543321 121 2
Q ss_pred ccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH-HHHh
Q 048180 230 RERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA-KHHL 288 (824)
Q Consensus 230 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g-~~l~ 288 (824)
+..+.+.-=+.+.-..||.++..... .++- ..+|.+.-.|.-+.=..+| .+|.
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~--~h~L----~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEE--DHRL----FDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCC--Ccch----hHHHHHHhhcCccCHHHHHHHHhh
Confidence 23567888888888899998886543 2333 3444444444433333333 3444
No 276
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.29 E-value=0.031 Score=53.18 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=47.0
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTLL 182 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l 182 (824)
+-|.|..|.|||++|.++.... ....+++.-.+.++. ++.+.|.+..... ...-...+....+.+.+.+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-------~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~- 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-------GGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKEL- 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-------CCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhc-
Confidence 6799999999999999987651 234677766666655 3555554422211 11111223334455555321
Q ss_pred cCCeEEEEEeCC
Q 048180 183 ETGKILLILDNM 194 (824)
Q Consensus 183 ~~kr~LlVlDdv 194 (824)
+ +.-.|++|.+
T Consensus 72 ~-~~~~VLIDcl 82 (169)
T cd00544 72 D-PGDVVLIDCL 82 (169)
T ss_pred C-CCCEEEEEcH
Confidence 1 2337999986
No 277
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.088 Score=56.25 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+.++|+++|.+|+||||++..++.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4589999999999999999999887643
No 278
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.26 E-value=0.39 Score=51.55 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=42.5
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC--cCCHHHHHHHHHHhcccccCC
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY--EDDLKELQIKIARKIDFVLSS 163 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~ 163 (824)
.....||-.+|.-|.||||.|-.+++..+.+ ...+-+...+ .+-..+-++.+..|++...-.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~-----~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKK-----GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHc-----CCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 4568999999999999999999999987652 2222222222 334556677778887765443
No 279
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.072 Score=59.21 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.-.+|+|+|.+|+||||++..+......
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999998876543
No 280
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.23 E-value=0.022 Score=59.38 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=23.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|+|-||+||||+|-.+..-...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 58999999999999999999887754
No 281
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.065 Score=58.00 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++.++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998754
No 282
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.20 E-value=0.023 Score=59.23 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=22.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|+|-||+||||+|..+..-...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 58899999999999999999887754
No 283
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.23 Score=53.85 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC--HHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD--LKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
..++|.++|+.|+||||.+..++......-...-..+..|+.. .+. ..+.++..++.++....... ....+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~----~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIE----SFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeC----cHHHHHH
Confidence 4679999999999999999999877643100111234445543 332 33345555665554332111 2233444
Q ss_pred HHHHHHcCCeEEEEEeCCCc
Q 048180 177 ALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~ 196 (824)
.+... .+.-+|++|..-.
T Consensus 248 ~L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHHh--CCCCEEEEcCCCC
Confidence 44432 4556889998743
No 284
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.19 E-value=0.038 Score=58.49 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..|.++.+.++++...... .......+++.++|++|.||||||+.+.+....
T Consensus 53 ~~G~~~~i~~lv~~l~~~a-~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAA-QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccCcHHHHHHHHHHHHHHH-hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4445555555554432211 011345689999999999999999999998754
No 285
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.03 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47999999999999999999999864
No 286
>PRK06762 hypothetical protein; Provisional
Probab=95.19 E-value=0.018 Score=54.90 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
++|.|+|++|.||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998775
No 287
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.17 E-value=0.019 Score=56.83 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCccEEEeccCCCcCC-----CC-ccCCCCccEEEcCCCC---CcccCChh------hhcCCCCCcEEEecCCCC-cccc
Q 048180 446 GDVERVSLMGNNLREL-----RT-CPMFCKLTTLFLQGNP---LDLQLDND------FFNSFPNLKILNLSDTSM-GILP 509 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~-----~~-~~~~~~L~~L~l~~~~---~~~~~~~~------~~~~l~~Lr~L~L~~~~~-~~lp 509 (824)
..+..+.+++|.+..- .. +.+-.+|+..+++.-- ....++.. .+.+|++|+..+||+|.+ ...|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4566777777765321 11 4455566666665431 01112221 245788999999999986 3344
Q ss_pred c----cccCcccccEEecccccccccCC
Q 048180 510 K----SLSSLKYLTVLLLQNCIYLTCLP 533 (824)
Q Consensus 510 ~----~i~~l~~L~~L~L~~c~~~~~lp 533 (824)
+ -|++-..|.+|.+++| .+..+.
T Consensus 110 e~L~d~is~~t~l~HL~l~Nn-GlGp~a 136 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNN-GLGPIA 136 (388)
T ss_pred hHHHHHHhcCCCceeEEeecC-CCCccc
Confidence 3 4567788999999886 344433
No 288
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.17 E-value=0.076 Score=55.63 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-----CcchhhhHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-----DESVRDNAIL 173 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~ 173 (824)
.-+++-|+|..|+||||||..+....... -..++||...+.++... +++++.+... ....++..+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~----g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ----GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT----T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc----cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHH
Confidence 35799999999999999999998875432 34689999988877644 3344433221 1112222222
Q ss_pred HHHHHHHHHc-CCeEEEEEeCCCcc
Q 048180 174 LENALQTLLE-TGKILLILDNMRKA 197 (824)
Q Consensus 174 l~~~l~~~l~-~kr~LlVlDdv~~~ 197 (824)
..+.++ +.--++|+|-|-..
T Consensus 123 ----~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 123 ----AEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp ----HHHHHHTTSESEEEEE-CTT-
T ss_pred ----HHHHhhcccccEEEEecCccc
Confidence 222333 44568999987543
No 289
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.15 E-value=0.1 Score=58.09 Aligned_cols=166 Identities=15% Similarity=0.060 Sum_probs=89.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENALQ 179 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~ 179 (824)
.-.-..|+-|+||||+||-++...-- .-| ....+++.-...+.|...-..+.-. +.-.+..++.+++...
T Consensus 39 hAYlfsG~RGvGKTt~Ari~AkalNC--------~~~-~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e 109 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKALNC--------ENG-PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIE 109 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHhcC--------CCC-CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHH
Confidence 34457899999999999999876532 112 2334455555555555431111100 0111223344444332
Q ss_pred HHH----cCCeEEEEEeCCCc--ccccchhcCCCCCCCc--E-EEEEcCChhhhhc-cccccccccCCCChHHHHHHHHH
Q 048180 180 TLL----ETGKILLILDNMRK--AFSLEEIGIPTLSNSL--R-IIITSPSSSLCRQ-MKCRERFALNLLTDEEAYLLLIN 249 (824)
Q Consensus 180 ~~l----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~gs--~-IivTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~ 249 (824)
+.. ++|-=+.|+|.|+- ...|+.+.-.+..+.+ + |+.||--..+... ....+.|.++.++.++-...+..
T Consensus 110 ~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~ 189 (515)
T COG2812 110 KVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAA 189 (515)
T ss_pred HhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHH
Confidence 221 35555889999874 4567776333333333 3 4455555555433 23346899999999988888777
Q ss_pred HhcCcCCCCchhHHHHHHHHHHHhCCChH
Q 048180 250 EVGLAGKVLEGEIEFGLKNIAKKCGGLPL 278 (824)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 278 (824)
.+-..+-.. ..+....|++..+|...
T Consensus 190 i~~~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 190 ILDKEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred HHHhcCCcc---CHHHHHHHHHHcCCChh
Confidence 765443211 12233445556666443
No 290
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.14 E-value=0.13 Score=56.53 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=55.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHHhccccc------CCCcc--hhhhH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIARKIDFVL------SSDES--VRDNA 171 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~--~~~~~ 171 (824)
.-++|+|..|+|||||+..+......+ +=+.++++-+.+.. .+.+++.++...-.... ..+.. .....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~---~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE---HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc---CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 568999999999999999988776542 11356777665554 35566666665321110 01111 11112
Q ss_pred HHHHHHHHHHH---cCCeEEEEEeCCCc
Q 048180 172 ILLENALQTLL---ETGKILLILDNMRK 196 (824)
Q Consensus 172 ~~l~~~l~~~l---~~kr~LlVlDdv~~ 196 (824)
....-.+.+++ ++|.+|+++||+-.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 22222333333 58999999999854
No 291
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.12 E-value=0.055 Score=58.92 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhccccc------CCCcch--h--
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFVL------SSDESV--R-- 168 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~--~-- 168 (824)
-..++|+|..|.|||||++.+.+.. ..+.++.+-+.+... +.++..+++..-+... ..++.. .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~------~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT------TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC------CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 3679999999999999999998642 134566666665544 3556666554321110 001111 1
Q ss_pred --hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 --DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 --~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.++++. +|+++|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd--~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRD--QGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEEcChHH
Confidence 122234455543 58999999999854
No 292
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.11 E-value=0.13 Score=54.37 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhh--hccccceEEEEEeCCcCCHHHHHHHHHHhccc
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQ--YRSHFNTFIWVEASYEDDLKELQIKIARKIDF 159 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 159 (824)
.-+++-|+|.+|+|||+|+.+++-..... ....=..++||+....|.+.++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45789999999999999998876432110 001123689999998888888754 5666553
No 293
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.026 Score=51.64 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=34.9
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL 161 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 161 (824)
+|.|-|.+|.||||+|+.+.+...-. ..+.-.++++|++..++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~---------------~vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK---------------LVSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc---------------eeeccHHHHHHHHHcCCCH
Confidence 78999999999999999999886431 1134568899998877643
No 294
>PRK03839 putative kinase; Provisional
Probab=95.08 E-value=0.019 Score=55.68 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.|.|+|++|.||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999863
No 295
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.07 E-value=0.026 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=21.7
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHhh
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILNQ 127 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~~ 127 (824)
|-|+|.+|+|||++|+.++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999999999999887653
No 296
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.34 Score=51.78 Aligned_cols=165 Identities=10% Similarity=0.006 Sum_probs=85.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccC---CCc-chhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLS---SDE-SVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~-~~~~~~~~l~ 175 (824)
...+-+.|+.|+||+|+|..+....--. +.-+ ...++.-.--+.+...-..+.. .+. .....+++++
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~--~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR 94 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQ--QPQG-------HKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVR 94 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCC--CCCC-------CCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHH
Confidence 4677799999999999999998876331 0000 0011111111112111100000 000 0112233333
Q ss_pred HHHHH----HHcCCeEEEEEeCCCccc--ccchh-c-CCCCCCCcEEEEEc-CChhhhhcc-ccccccccCCCChHHHHH
Q 048180 176 NALQT----LLETGKILLILDNMRKAF--SLEEI-G-IPTLSNSLRIIITS-PSSSLCRQM-KCRERFALNLLTDEEAYL 245 (824)
Q Consensus 176 ~~l~~----~l~~kr~LlVlDdv~~~~--~~~~l-~-~~~~~~gs~IivTT-r~~~v~~~~-~~~~~~~l~~L~~~~~~~ 245 (824)
+..+. -..+++=++|+|+++.+. .-+.+ + +-.+..++.+|++| +-..+.... .....+.+.+++.+++.+
T Consensus 95 ~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~ 174 (334)
T PRK07993 95 EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALT 174 (334)
T ss_pred HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHH
Confidence 32211 113666789999988764 23333 1 22233455555444 445554332 223578899999999887
Q ss_pred HHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHH
Q 048180 246 LLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAII 281 (824)
Q Consensus 246 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 281 (824)
.+..... .+ .+.+..++..++|.|..+.
T Consensus 175 ~L~~~~~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 175 WLSREVT-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHccC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 7654321 11 1225678899999996543
No 297
>PRK07667 uridine kinase; Provisional
Probab=95.07 E-value=0.035 Score=54.36 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
....+|+|-|.+|.||||+|+.+......
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44589999999999999999999988754
No 298
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.07 E-value=0.094 Score=57.26 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=57.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccc---------eEEEEEeCCcCCHHHHHHHHHHhcc-ccc-------CC
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFN---------TFIWVEASYEDDLKELQIKIARKID-FVL-------SS 163 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-------~~ 163 (824)
.-++|+|-.|+|||||+..+.+.....-..-.| .++++-+.+.....+.+.+.+..-+ ... .+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 568999999999999999998775410000012 5677778877667776776666544 111 11
Q ss_pred C-cchhhhHHHHHHHHHHHHc---CCeEEEEEeCCCc
Q 048180 164 D-ESVRDNAILLENALQTLLE---TGKILLILDNMRK 196 (824)
Q Consensus 164 ~-~~~~~~~~~l~~~l~~~l~---~kr~LlVlDdv~~ 196 (824)
+ ...........-.+.++++ +|++|+++||+-.
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1 1111122222223444443 6999999999843
No 299
>PRK08149 ATP synthase SpaL; Validated
Probab=95.06 E-value=0.07 Score=58.26 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhccc-----ccCC-Ccch-----
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDF-----VLSS-DESV----- 167 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-----~~~~-~~~~----- 167 (824)
-..++|+|..|.|||||++.+++... -+.++...+... .++.++..+....... -... +...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~------~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE------ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC------CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 46789999999999999998876432 233333434333 3455666666553221 1111 1111
Q ss_pred -hhhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 168 -RDNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 168 -~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
....-.+.+++++ ++|++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~--~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRD--QGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEccchHH
Confidence 1123334455543 48999999999854
No 300
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.11 Score=58.94 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
+-++++.||++|+|||+|++.++...... | +-+++..-.|..++-.. ..--.......+.+.+
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~Rk----f---vR~sLGGvrDEAEIRGH----------RRTYIGamPGrIiQ~m 411 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRK----F---VRISLGGVRDEAEIRGH----------RRTYIGAMPGKIIQGM 411 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCC----E---EEEecCccccHHHhccc----------cccccccCChHHHHHH
Confidence 34899999999999999999999987442 3 33445544444332110 0000111112233333
Q ss_pred HHHHcCCeEEEEEeCCCcccc-c--------chhcCCCCC------------CCc-EEEEEcCCh-h-h-hhcccccccc
Q 048180 179 QTLLETGKILLILDNMRKAFS-L--------EEIGIPTLS------------NSL-RIIITSPSS-S-L-CRQMKCRERF 233 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~-~--------~~l~~~~~~------------~gs-~IivTTr~~-~-v-~~~~~~~~~~ 233 (824)
+ ..+.+.-+++||.++.... + -++..|-.+ -=| .+.|||-|. + + +..+....++
T Consensus 412 k-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI 490 (782)
T COG0466 412 K-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVI 490 (782)
T ss_pred H-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeee
Confidence 3 1235778999999976521 1 111111111 124 344566442 1 1 2233445688
Q ss_pred ccCCCChHHHHHHHHHHh
Q 048180 234 ALNLLTDEEAYLLLINEV 251 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~ 251 (824)
++.+-+++|=.++-+++.
T Consensus 491 ~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 491 RLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCCChHHHHHHHHHhc
Confidence 888888888777776665
No 301
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.05 E-value=0.02 Score=55.87 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998764
No 302
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.05 E-value=0.033 Score=55.91 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.5
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
|.|+|++|+||||+|+.+....
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 303
>PRK06547 hypothetical protein; Provisional
Probab=95.05 E-value=0.023 Score=54.32 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.7
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.....+|+|.|++|.||||+|+.+....
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998864
No 304
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.01 E-value=0.18 Score=60.51 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+-|.++|++|.||||||+.+++..
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Confidence 34668899999999999999998875
No 305
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.99 E-value=0.066 Score=48.42 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=61.8
Q ss_pred ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC--CcccCCC
Q 048180 464 CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVE 540 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~ 540 (824)
+.++++|+.+.+... ...++...|..+..|+.+.+.++ +..++. .+.++..|+++.+.+ .+..++ .+..+.+
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 567778888888753 56677777888888999998774 666655 456777888888865 455555 3777888
Q ss_pred ccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCC
Q 048180 541 LMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNL 588 (824)
Q Consensus 541 L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L 588 (824)
|+.+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 999988664 6655543 4555 788887765 3455555556555554
No 306
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.99 E-value=0.057 Score=58.97 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC-cCCHHHHHHHHHHhccccc-------CCCcc-hhh-
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY-EDDLKELQIKIARKIDFVL-------SSDES-VRD- 169 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~-~~~- 169 (824)
-..++|+|..|+|||||++.+...... +..+.+.+.+ ...+.++..+.+..-+... .++.. ...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~------~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA------DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC------CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 367999999999999999888765322 2222222323 3334555555544322110 11111 111
Q ss_pred ---hHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 170 ---NAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 170 ---~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
..-.+.++++. +++++|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd--~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRD--QGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEeccchhH
Confidence 22234444443 48999999999854
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.26 Score=52.62 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=52.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
.+.++|+++|+.|+||||++..++.....+ + ..+.+|+.... ....+-++...+.++....... ....+.+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~--g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~----dp~dL~~ 275 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ--N--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT----SPAELEE 275 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--C--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC----CHHHHHH
Confidence 457899999999999999999998776432 2 24556655322 2234555666665553322111 1233444
Q ss_pred HHHHHHc-CCeEEEEEeCCC
Q 048180 177 ALQTLLE-TGKILLILDNMR 195 (824)
Q Consensus 177 ~l~~~l~-~kr~LlVlDdv~ 195 (824)
.+...-. +..=+|++|-.-
T Consensus 276 al~~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 276 AVQYMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHHHHhcCCCCEEEEECCC
Confidence 4432211 345678888764
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.99 E-value=0.075 Score=58.67 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
-+++.++|++|+||||++..++...... .. -..+..|+....- ...+.++...+.++.......+ ...+...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~----~~~l~~~l 294 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD----PKELAKAL 294 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC----HHhHHHHH
Confidence 4699999999999999999887765411 11 2345556543211 1122333333334332211111 12334444
Q ss_pred HHHHcCCeEEEEEeCC
Q 048180 179 QTLLETGKILLILDNM 194 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv 194 (824)
.+ + ...=+||+|..
T Consensus 295 ~~-~-~~~DlVlIDt~ 308 (424)
T PRK05703 295 EQ-L-RDCDVILIDTA 308 (424)
T ss_pred HH-h-CCCCEEEEeCC
Confidence 32 2 23567888965
No 309
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.12 Score=47.70 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999998887665
No 310
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.98 E-value=0.15 Score=52.12 Aligned_cols=95 Identities=12% Similarity=0.193 Sum_probs=54.3
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhhhccccceE-EEEEeCCcC-CHHHHHHHHHHhccccc------CCCcchhh--
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQYRSHFNTF-IWVEASYED-DLKELQIKIARKIDFVL------SSDESVRD-- 169 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~-- 169 (824)
.-++|+|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. .+.++..++...-.... ..++....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~------~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK------GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc------CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 46899999999999996 5555432 13444 556665553 34566666654211100 01111111
Q ss_pred ----hHHHHHHHHHHHHcCCeEEEEEeCCCcc-cccchh
Q 048180 170 ----NAILLENALQTLLETGKILLILDNMRKA-FSLEEI 203 (824)
Q Consensus 170 ----~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~l 203 (824)
..-.+.++++. ++|.+|||+||+-.. ..+.++
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 23444555554 489999999998654 345554
No 311
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.97 E-value=0.28 Score=58.57 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...++.++|++|+||||+|+.++...
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999865
No 312
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.97 E-value=0.097 Score=62.52 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++-++|+.|+|||+||+.++...
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHh
Confidence 4568899999999999999998865
No 313
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.96 E-value=0.13 Score=54.40 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=40.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhh-cc-ccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQY-RS-HFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
..-.++-|+|.+|+||||||..++....... .. .-..++|++....+...++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3468999999999999999999876322100 01 1135799998888887764 44555544
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.95 E-value=0.087 Score=54.21 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=61.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc----CCCcch---hhh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL----SSDESV---RDN 170 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~---~~~ 170 (824)
.+..-++|+|..|.|||||.+.+...... ....+++.-.. ....+-..++......-. ....+. ...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~-----~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILST-----GISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCC-----CCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccchH
Confidence 34578999999999999999999877543 22233331100 000011122322221100 000000 111
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhh
Q 048180 171 AILLENALQTLLETGKILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLC 224 (824)
Q Consensus 171 ~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~ 224 (824)
...+...++ ....=++|+|.+-..+.+..+.... ..|..||+||-+..+.
T Consensus 183 ~~~~~~~i~---~~~P~villDE~~~~e~~~~l~~~~-~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 183 AEGMMMLIR---SMSPDVIVVDEIGREEDVEALLEAL-HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHH---hCCCCEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEechhHHH
Confidence 222333232 2477899999998776655542222 2577899999876553
No 315
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.92 E-value=0.1 Score=54.91 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeC-CcCCHHHHHHHHHHhccccc------CCCcc--hh--
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEAS-YEDDLKELQIKIARKIDFVL------SSDES--VR-- 168 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~------~~~~~--~~-- 168 (824)
-..++|+|..|.|||||.+.+.+.... +..+..-+. ...+..++....+..-+... ..++. ..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~------~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA------DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC------CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 367899999999999999988865322 233333333 23445555555554322100 01111 11
Q ss_pred --hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 --DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 --~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.+++++ ++|.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~--~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRD--QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHH--cCCCeEEEeccchH
Confidence 122334455543 48999999999754
No 316
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.90 E-value=0.14 Score=55.39 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-cchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD-ESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l 178 (824)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++. .-+..++.....- .......+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~----g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR----GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 4699999999999999999998876442 235677765433 33332 2234444322110 00112233444444
Q ss_pred HHHHcCCeEEEEEeCCCc
Q 048180 179 QTLLETGKILLILDNMRK 196 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~ 196 (824)
. +.+.-+||+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 3 24566888888743
No 317
>PRK04040 adenylate kinase; Provisional
Probab=94.89 E-value=0.024 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|+|++|.||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 318
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.11 Score=58.68 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=49.3
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
+-+-++++.+|++|+|||.+|+.|+...... | +-+++..-.|+.+|-. ...--.......+.+
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk----F---fRfSvGG~tDvAeIkG----------HRRTYVGAMPGkiIq 497 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRK----F---FRFSVGGMTDVAEIKG----------HRRTYVGAMPGKIIQ 497 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCc----e---EEEeccccccHHhhcc----------cceeeeccCChHHHH
Confidence 3456899999999999999999999887432 2 2345555555544321 111011111123334
Q ss_pred HHHHHHcCCeEEEEEeCCCcc
Q 048180 177 ALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~ 197 (824)
.|+. .+...-|+.+|.|+..
T Consensus 498 ~LK~-v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 498 CLKK-VKTENPLILIDEVDKL 517 (906)
T ss_pred HHHh-hCCCCceEEeehhhhh
Confidence 4431 2356678999999754
No 319
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.86 E-value=0.14 Score=56.07 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=56.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhccccc------CCCcc--hhhhH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFVL------SSDES--VRDNA 171 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~--~~~~~ 171 (824)
.-++|+|..|+|||+|+..+...... .+-+.++++-+.+... +.++..++...-.... ..++. .....
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~---~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVG---QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh---cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 56899999999999999999887542 2346788888766544 4556666654311110 01111 11122
Q ss_pred HHHHHHHHHHH---cCCeEEEEEeCCCc
Q 048180 172 ILLENALQTLL---ETGKILLILDNMRK 196 (824)
Q Consensus 172 ~~l~~~l~~~l---~~kr~LlVlDdv~~ 196 (824)
....-.+.+++ +++++|+++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 22223334444 36999999999854
No 320
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.85 E-value=0.15 Score=54.47 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhh-hcc-ccceEEEEEeCCcCCHHHHHHHHHHhccc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQ-YRS-HFNTFIWVEASYEDDLKELQIKIARKIDF 159 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 159 (824)
..-.++-|+|.+|+|||++|..++-..... ... .-..++||+....|.+.++. +|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 345788899999999999999887543210 000 11368999999999888764 55665543
No 321
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.85 E-value=0.054 Score=52.88 Aligned_cols=42 Identities=31% Similarity=0.591 Sum_probs=28.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDL 146 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 146 (824)
.|+|+|-||+||||+|......... ++.|+ +.=|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~--~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS--KGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh--cCCce-EEEEeCCCCCCh
Confidence 6899999999999999997666544 23232 333444445554
No 322
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.85 E-value=0.19 Score=53.62 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=42.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh--hhccccceEEEEEeCCcCCHHHHHHHHHHhccc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN--QYRSHFNTFIWVEASYEDDLKELQIKIARKIDF 159 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 159 (824)
..-+++=|+|.+|+|||+|+.+++-.... .....-..++||+....|.+.++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34578889999999999999988643211 0011124689999999999888655 5555554
No 323
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.84 E-value=0.16 Score=52.09 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=39.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhc--cccceEEEEEeCCcCCHHHHHHHHHHhc
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYR--SHFNTFIWVEASYEDDLKELQIKIARKI 157 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~~F~~~~wv~~s~~~~~~~~~~~i~~~l 157 (824)
-.|.=|+|.+|+|||.||.+++-....... +.=..++|++-...|...++. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 468899999999999999988755321100 112368999999999887775 466544
No 324
>PRK05922 type III secretion system ATPase; Validated
Probab=94.83 E-value=0.11 Score=56.81 Aligned_cols=90 Identities=11% Similarity=0.175 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhccccc-------CCC-cchhh-
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDFVL-------SSD-ESVRD- 169 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~-~~~~~- 169 (824)
-..++|+|..|+|||||.+.+.+... -+..+.+.+.+. ....+.+.+......... .++ .....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~------~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK------STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC------CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 35689999999999999999986532 233333333332 233445544443322111 000 01111
Q ss_pred ---hHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 170 ---NAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 170 ---~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
..-.+.++++. +|+++|+++||+-..
T Consensus 231 a~~~a~tiAEyfrd--~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRD--QGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEeccchhHH
Confidence 22234444442 489999999998543
No 325
>PRK00625 shikimate kinase; Provisional
Probab=94.81 E-value=0.024 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.|.++||+|+||||+|+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988753
No 326
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.79 E-value=0.036 Score=57.63 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+|+|.|-||+||||+|..+......
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK 26 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh
Confidence 5888899999999999998887654
No 327
>PTZ00035 Rad51 protein; Provisional
Probab=94.76 E-value=0.19 Score=53.73 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=40.2
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhh--hccccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQ--YRSHFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
..-.++-|+|..|.|||||+..++-....- ....=..++||+....|...++ .++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 345899999999999999999887543210 0001235679988877877773 44455544
No 328
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.75 E-value=1.6 Score=47.19 Aligned_cols=199 Identities=14% Similarity=0.146 Sum_probs=109.3
Q ss_pred HHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHH-HHHHHHHHhhhccccceEEEEEeCC---cCCHHHHHHHHHH
Q 048180 80 IIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAG-AHVYNRILNQYRSHFNTFIWVEASY---EDDLKELQIKIAR 155 (824)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~ 155 (824)
.+++|-.|+.+ ..=.+|.|.|+-|.||+.|+ .++-.+.+ .+..+.+.+ ..+-..+++.++.
T Consensus 4 ~~~~L~~wL~e-------~~~TFIvV~GPrGSGK~elV~d~~L~~r~--------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 4 AIEQLKSWLNE-------NPNTFIVVQGPRGSGKRELVMDHVLKDRK--------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred HHHHHHHHHhc-------CCCeEEEEECCCCCCccHHHHHHHHhCCC--------CEEEEEChHhhhccChHHHHHHHHH
Confidence 34556666532 33479999999999999999 66655421 134443322 2234455555555
Q ss_pred hccc------------------------ccCCCcchhhhHHHHHHHHHHHHc--------------------------CC
Q 048180 156 KIDF------------------------VLSSDESVRDNAILLENALQTLLE--------------------------TG 185 (824)
Q Consensus 156 ~l~~------------------------~~~~~~~~~~~~~~l~~~l~~~l~--------------------------~k 185 (824)
|+|. +.+-.++.+.....+.+.....|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 5532 111112222222222221111111 12
Q ss_pred eEEEEEeCCCcccc-----cchhc---CCC-CCCCcEEEEEcCChhhhhc----cc--cccccccCCCChHHHHHHHHHH
Q 048180 186 KILLILDNMRKAFS-----LEEIG---IPT-LSNSLRIIITSPSSSLCRQ----MK--CRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 186 r~LlVlDdv~~~~~-----~~~l~---~~~-~~~gs~IivTTr~~~v~~~----~~--~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
|-+||+|+.-.... |+.+. ..+ ..+-..||++|-+...... +. ..+.+.|...+.+.|.+....+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 67899999754321 22221 111 1233478888877555432 22 2246788999999999999888
Q ss_pred hcCcCCC-------------Cc----hhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCCh
Q 048180 251 VGLAGKV-------------LE----GEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDF 295 (824)
Q Consensus 251 ~~~~~~~-------------~~----~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~ 295 (824)
....... .. .....--...++..||==.-+..+++.++ .+.++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik--sGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK--SGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH--cCCCH
Confidence 7543110 00 11222335567788888888888888888 44443
No 329
>PHA00729 NTP-binding motif containing protein
Probab=94.69 E-value=0.034 Score=54.97 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+..-|.|+|.+|+||||||..+.+...
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999998753
No 330
>PRK15453 phosphoribulokinase; Provisional
Probab=94.69 E-value=0.18 Score=51.43 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+..+|+|.|.+|.||||+|+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999987653
No 331
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.63 E-value=0.038 Score=50.83 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=28.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY 142 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 142 (824)
++|.|+|..|.|||||++.+.+....+ .+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~---g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR---GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc---CCceEEEEEccC
Confidence 489999999999999999999998652 344444555444
No 332
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.63 E-value=0.044 Score=57.02 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+||+|.|-||+||||+|..+......
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~ 28 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAK 28 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999887754
No 333
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.61 E-value=0.096 Score=57.51 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc-------CCCc-chh--
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL-------SSDE-SVR-- 168 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~-~~~-- 168 (824)
+-..++|+|..|.|||||++.+...... -..+++..--....+.++...+...-+... .+.. ...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~-----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC-----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 4468999999999999999998765322 112333333333445555565554322110 1110 111
Q ss_pred --hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 --DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 --~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.++++. ++|.+|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd--~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRD--RGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEeccchhH
Confidence 112233444443 48999999999854
No 334
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.58 E-value=0.013 Score=34.48 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=9.7
Q ss_pred ccEEeccCCCCcccCcccc
Q 048180 541 LMVLDVSGSGIAEFPDGMN 559 (824)
Q Consensus 541 L~~L~l~~~~l~~lp~~i~ 559 (824)
|++||+++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 335
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.58 E-value=0.14 Score=50.13 Aligned_cols=51 Identities=12% Similarity=0.263 Sum_probs=32.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhcccc-------ceEEEEEeCCcCCHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHF-------NTFIWVEASYEDDLKELQIKIA 154 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-------~~~~wv~~s~~~~~~~~~~~i~ 154 (824)
.++.|+|.+|+||||++.++....... ...| ..++|+..... ..++.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g-~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATG-RPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT----TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhC-CccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 488899999999999999998876542 1112 25777776655 334444443
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.57 E-value=0.19 Score=53.38 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhh-cc-ccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQY-RS-HFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
.-.|+-|+|.+|+||||+|.+++....... .. .=..++||+....|+..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 358899999999999999999987642100 00 01268999998888887755 4444443
No 337
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.57 E-value=0.066 Score=53.04 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=40.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhhhccCCCccccccccccchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChH
Q 048180 34 RRYLVGKNISRIKERVNELTNEFQRNRGINTVDRQYQQGELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGK 113 (824)
Q Consensus 34 ~r~~~~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGK 113 (824)
.++.+.++|..+++.++++.+.+.+- +. + . ..++...|+|+|.+|+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~---~-~---------~~~~~~~I~iiG~~g~GK 54 (204)
T cd01878 7 DRRLIRERIAKLRRELEKVKKQRELQ-------------------RR---R-R---------KRSGIPTVALVGYTNAGK 54 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-------------------HH---h-h---------hhcCCCeEEEECCCCCCH
Confidence 35667777777777777776653321 00 0 0 024567999999999999
Q ss_pred hHHHHHHHHHH
Q 048180 114 TEAGAHVYNRI 124 (824)
Q Consensus 114 TtLa~~v~~~~ 124 (824)
|||...+.+..
T Consensus 55 StLl~~l~~~~ 65 (204)
T cd01878 55 STLFNALTGAD 65 (204)
T ss_pred HHHHHHHhcch
Confidence 99999998764
No 338
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.57 E-value=0.024 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
||+|.|..|.||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 339
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.56 E-value=0.15 Score=61.67 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++-++|+.|+|||+||+.+.+..
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4566789999999999999998875
No 340
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.56 E-value=0.042 Score=52.11 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...++++|+|..|.|||||++.+......
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 35679999999999999999999988754
No 341
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.54 E-value=0.21 Score=55.21 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=56.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhccccc--------------CCC-
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFVL--------------SSD- 164 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~--------------~~~- 164 (824)
.-++|+|-.|+|||||+..+....... +=+.++++-+.+... +.+++.+++..-.... ..+
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~---~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKA---HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHh---cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 568999999999999999988774331 116788887766643 4666666665211000 000
Q ss_pred cchhhhHHHHHHHHHHHHc--CC-eEEEEEeCCCcc
Q 048180 165 ESVRDNAILLENALQTLLE--TG-KILLILDNMRKA 197 (824)
Q Consensus 165 ~~~~~~~~~l~~~l~~~l~--~k-r~LlVlDdv~~~ 197 (824)
...........-.+.++++ ++ ++||++||+-..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 0111122233333455553 44 899999998543
No 342
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.54 E-value=0.3 Score=49.29 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
-.++.|.|..|.||||+|.++...... ++ ...++++ ...+..++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g--~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ--NG--YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--CC--CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 469999999999999998776665422 11 2356666 333556777766 3343
No 343
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.53 E-value=0.15 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
||+|.|..|.||||+|+.+.+....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887653
No 344
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.53 E-value=0.24 Score=59.35 Aligned_cols=148 Identities=10% Similarity=0.140 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+-|-++|++|.|||++|+++++..... | +.++. .+++ ... ..+....+++.+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~----f-----i~v~~----~~l~----~~~---------vGese~~i~~~f~ 540 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGAN----F-----IAVRG----PEIL----SKW---------VGESEKAIREIFR 540 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCC----E-----EEEeh----HHHh----hcc---------cCcHHHHHHHHHH
Confidence 4557889999999999999999875321 2 22221 1111 110 0011122333333
Q ss_pred HHHcCCeEEEEEeCCCccc--------c------cchh-c--CCCCC-CCcEEEEEcCChhhhhc--c---ccccccccC
Q 048180 180 TLLETGKILLILDNMRKAF--------S------LEEI-G--IPTLS-NSLRIIITSPSSSLCRQ--M---KCRERFALN 236 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~--------~------~~~l-~--~~~~~-~gs~IivTTr~~~v~~~--~---~~~~~~~l~ 236 (824)
..-+....+|++|+++... . ...+ . ..... .+--||.||........ . ..+..+.+.
T Consensus 541 ~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~ 620 (733)
T TIGR01243 541 KARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVP 620 (733)
T ss_pred HHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeC
Confidence 3334667999999986431 0 0111 1 11111 22245556655443221 1 234577888
Q ss_pred CCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 237 LLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
..+.++-.++|..+..+.......++ ..+++.+.|.-
T Consensus 621 ~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 621 PPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 88888888888766543321122223 44666677653
No 345
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.53 E-value=0.19 Score=51.68 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY 142 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 142 (824)
.-+++-|.|.+|.||||+|.++......+ =..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEEecC
Confidence 45799999999999999999986654321 23577887754
No 346
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.0049 Score=58.41 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=43.5
Q ss_pred cccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchh
Q 048180 701 IPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELR 777 (824)
Q Consensus 701 l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 777 (824)
+.+++.++.|.+.+|..+.+.--....+-.|+|+.|+|++|+.+++-.- ..+..|++|+.|.|.+++...
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------HHHHHhhhhHHHHhcCchhhh
Confidence 4556777777777777666553222333467777777777777765431 134467777777777765444
No 347
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.52 E-value=0.12 Score=56.45 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc------CCCcc--hhhh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL------SSDES--VRDN 170 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~--~~~~ 170 (824)
.-..++|+|..|.|||||++.++..... ...++...-.+...+.+++.+.+..-+... ..+.+ ....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA-----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC-----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 3457899999999999999999876432 112332222233566677666655432111 01111 1112
Q ss_pred H----HHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 171 A----ILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 171 ~----~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
. ..+.+++++ ++|.+|||+||+-..
T Consensus 230 a~~~a~~iAEyfr~--~G~~VLlilDslTr~ 258 (432)
T PRK06793 230 AAKLATSIAEYFRD--QGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEecchHHH
Confidence 2 223344442 489999999998544
No 348
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.52 E-value=0.052 Score=57.11 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+.++|+|.|-||+||||.|..+......
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~ 30 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE 30 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 3579999999999999999988877654
No 349
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.51 E-value=0.13 Score=50.39 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+|+|.|..|+||||+|+.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988754
No 350
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.50 E-value=0.25 Score=50.22 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIA 154 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 154 (824)
.-+++-|.|.+|.|||++|.++......+ -..++||+... ++.++.+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~----ge~~lyvs~ee--~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVALEE--HPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEEEeeC--CHHHHHHHHH
Confidence 45899999999999999999876553221 34678888654 4556666543
No 351
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.50 E-value=0.025 Score=58.42 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=42.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHh-cccccCCCcchhhhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARK-IDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
+-+-++|+.|+|||++++........ ..| ...-++.+...+...++ +++++ +.......-...
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~---~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~~gP~----------- 97 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDS---DKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRVYGPP----------- 97 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTT---CCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTEEEEEE-----------
T ss_pred CcEEEECCCCCchhHHHHhhhccCCc---ccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCCCCCC-----------
Confidence 45579999999999999998765322 112 23345555554444443 33332 221111000000
Q ss_pred HHHcCCeEEEEEeCCCc
Q 048180 180 TLLETGKILLILDNMRK 196 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~ 196 (824)
.+|+.++.+||+.-
T Consensus 98 ---~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 98 ---GGKKLVLFIDDLNM 111 (272)
T ss_dssp ---SSSEEEEEEETTT-
T ss_pred ---CCcEEEEEecccCC
Confidence 27899999999853
No 352
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=0.46 Score=50.55 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
...+-++|+.|+||||+|+.+....-
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999988753
No 353
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.48 E-value=0.027 Score=54.38 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
||+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998874
No 354
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.47 E-value=0.027 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
+|||.|..|.||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 355
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.46 E-value=0.035 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...|.|+|++|.||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999875
No 356
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.46 E-value=0.079 Score=53.54 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=26.7
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+..+|+|.|..|.|||||++.+......
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456899999999999999999999988765
No 357
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.028 Score=52.15 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHhHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVY 121 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~ 121 (824)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 358
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.41 E-value=0.028 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998764
No 359
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.40 E-value=0.083 Score=49.10 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQ 127 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 127 (824)
.||-|.|.+|.||||||+++.......
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 588999999999999999999998763
No 360
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.38 E-value=0.16 Score=56.53 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-.|++++|+.|+||||++.+++.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999987643
No 361
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.38 E-value=0.25 Score=57.89 Aligned_cols=127 Identities=9% Similarity=0.112 Sum_probs=67.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+-|.++|++|.||||+|+.+.+..... | +.++.+ ++.. +.. + .....+++.+..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~----f---~~is~~------~~~~-~~~--g----------~~~~~~~~~f~~ 239 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP----F---FTISGS------DFVE-MFV--G----------VGASRVRDMFEQ 239 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC----E---EEEehH------HhHH-hhh--c----------ccHHHHHHHHHH
Confidence 348999999999999999998865331 2 222221 1111 100 0 011223333333
Q ss_pred HHcCCeEEEEEeCCCccc------------cc----chhc--C-CCCC-CCcEEEEEcCChhhhhc--c---cccccccc
Q 048180 181 LLETGKILLILDNMRKAF------------SL----EEIG--I-PTLS-NSLRIIITSPSSSLCRQ--M---KCRERFAL 235 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~------------~~----~~l~--~-~~~~-~gs~IivTTr~~~v~~~--~---~~~~~~~l 235 (824)
.-.....+|++|+++... .+ ..+. . .+.. .+--||.||...+.... . ..++.+.+
T Consensus 240 a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v 319 (644)
T PRK10733 240 AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 319 (644)
T ss_pred HHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEc
Confidence 334567899999986541 01 1110 0 1111 22345556665543221 1 12356778
Q ss_pred CCCChHHHHHHHHHHhcC
Q 048180 236 NLLTDEEAYLLLINEVGL 253 (824)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~ 253 (824)
...+.++-.+++..+...
T Consensus 320 ~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 320 GLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 878878888888777654
No 362
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.37 E-value=0.44 Score=57.81 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++.++|+.|+|||++|+.+++..
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999765
No 363
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.37 E-value=0.16 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.|.++|++|.||||+|+++......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3779999999999999999987653
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.37 E-value=0.19 Score=53.77 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCChHh-HHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhcccc
Q 048180 99 GAVVLGVCGASGVGKT-EAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDFV 160 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 160 (824)
+-+||++||+.|+||| |||+..+..... ..=..+..|+...- ....+-++.-++-++..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~---~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML---KKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh---ccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 3799999999999997 567766665411 11234666665332 23344444444444433
No 365
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.36 E-value=0.13 Score=56.31 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhccc-------ccCCCcc-hh--
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDF-------VLSSDES-VR-- 168 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~-~~-- 168 (824)
-..++|+|..|.|||||++.+.+... -+..+.+.+.+. ..+.++..+....-.. ...++.. ..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~------~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE------ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC------CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 35799999999999999988876432 233444455443 2344555554433111 0011111 11
Q ss_pred --hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 --DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 --~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.++++. +++++|+++||+-.
T Consensus 211 a~~~a~tiAEyfr~--~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRD--QGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEeChHH
Confidence 122333445543 48999999999843
No 366
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.35 E-value=0.13 Score=51.87 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=65.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC-----cCCHHHHHHHHHHhcccccC------CCcc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY-----EDDLKELQIKIARKIDFVLS------SDES 166 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~------~~~~ 166 (824)
.+-.++|+||..|.||||+|+.+..-.... . ..+++.-.+ .....+-..++++.++.... .+-+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt----~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelS 111 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPT----S-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELS 111 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCC----C-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccC
Confidence 445799999999999999999998754431 2 233332111 22233445555665553221 1111
Q ss_pred hhhhHHHHHHHHHHHHcCCeEEEEEeCCCccccc-------chhcCCCCCCCcEEEEEcCChhhhhcc
Q 048180 167 VRDNAILLENALQTLLETGKILLILDNMRKAFSL-------EEIGIPTLSNSLRIIITSPSSSLCRQM 227 (824)
Q Consensus 167 ~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-------~~l~~~~~~~gs~IivTTr~~~v~~~~ 227 (824)
..+.. +-.+.+.|.-+.=|+|.|.--+..+. +.+..-....|-..+..|-+-.|++.+
T Consensus 112 GGQrQ---Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 112 GGQRQ---RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred chhhh---hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 11111 12244555689999999986544321 111111112344566677776676654
No 367
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.11 Score=49.45 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+.|-+.|.+|+||||+|+++....+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 45778999999999999999988765
No 368
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.27 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+-++|+.|+||||+|.++.+....
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 35889999999999999999998753
No 369
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.02 Score=33.66 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=11.8
Q ss_pred CcEEEecCCCCccccccccC
Q 048180 495 LKILNLSDTSMGILPKSLSS 514 (824)
Q Consensus 495 Lr~L~L~~~~~~~lp~~i~~ 514 (824)
|++|+|++|.++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 56666666666666655443
No 370
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.29 E-value=0.048 Score=52.53 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-.+|.|+|++|.||||+|+.+......
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999998753
No 371
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.29 E-value=0.23 Score=50.22 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
.-.++.|.|.+|.||||+|.++......+ -...+|++.... ..++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~e~~--~~~i~~~ 66 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTTEES--RESIIRQ 66 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEccCC--HHHHHHH
Confidence 34799999999999999999876543221 346788876443 3444433
No 372
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.28 E-value=0.074 Score=63.26 Aligned_cols=191 Identities=19% Similarity=0.086 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH-HhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC---cchhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI-LNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD---ESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 175 (824)
-+++.|+|+.|.||||+.+.+.-.. ..+ .+ ++|....... ...+.++...++....-. ..-......+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq-~G-----~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQ-SG-----IPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHH-hC-----CCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 4789999999999999999997662 221 11 1221111100 001111111111000000 00000112222
Q ss_pred HHHHHHHcCCeEEEEEeCCCcccccc---hhc----CCCCCCCcEEEEEcCChhhhhccccccccccCCCChHHHHHHHH
Q 048180 176 NALQTLLETGKILLILDNMRKAFSLE---EIG----IPTLSNSLRIIITSPSSSLCRQMKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv~~~~~~~---~l~----~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
..+.. + +++-|+++|..-.-.+.. .+. --+...|+.+|+||-...+.........+.-..+..++- .+-.
T Consensus 395 ~il~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~p 471 (771)
T TIGR01069 395 AILSK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLSP 471 (771)
T ss_pred HHHHh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCce
Confidence 22221 1 478999999986543211 111 112236789999999987754321111111000000000 0000
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDA 308 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~ 308 (824)
.+-...+. +. ...|-.|++++ |+|-.+.--|..+. .....+...+++.+...
T Consensus 472 ~Ykl~~G~-~g---~S~a~~iA~~~-Glp~~ii~~A~~~~---~~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 472 TYKLLKGI-PG---ESYAFEIAQRY-GIPHFIIEQAKTFY---GEFKEEINVLIEKLSAL 523 (771)
T ss_pred EEEECCCC-CC---CcHHHHHHHHh-CcCHHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 00011111 11 23466777766 89999888888776 23445677777766543
No 373
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.27 E-value=0.063 Score=60.19 Aligned_cols=27 Identities=44% Similarity=0.681 Sum_probs=24.1
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.+++.+|+|.|..|.||||||+.+...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 456789999999999999999999765
No 374
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.26 E-value=0.27 Score=51.12 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
....+|||.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998876553
No 375
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.25 E-value=0.037 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.++.|+|+.|+||||+|+.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998864
No 376
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.069 Score=48.05 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED 144 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~ 144 (824)
.+=|-|.|.+|+||||+|.+++.... .-|+++++-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~---------~~~i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG---------LEYIEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC---------CceEehhhHH
Confidence 34577999999999999999985432 2467766543
No 377
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.24 E-value=0.13 Score=56.27 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHHhcccc------cCCCcch--h
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIARKIDFV------LSSDESV--R 168 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~--~ 168 (824)
..-..++|+|..|.|||||++.+.+.... +..+..-+.+.. .+.++..+.+.+-+.. ...++.. .
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~~------~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r 208 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNAKA------DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMR 208 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHH
Confidence 34478999999999999999988764322 222222333322 3445555544431110 0011111 1
Q ss_pred ----hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ----DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ----~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.+++++ ++|.+|+++||+-.
T Consensus 209 ~~~~~~a~tiAEyfr~--~G~~Vll~~Dsltr 238 (413)
T TIGR03497 209 LKAAFTATAIAEYFRD--QGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEcCcHH
Confidence 122333444443 48999999999854
No 378
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.24 E-value=0.16 Score=55.94 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHh------cccccCCCcc--hh--
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARK------IDFVLSSDES--VR-- 168 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~------l~~~~~~~~~--~~-- 168 (824)
.-.+++|+|..|.|||||++.+...... -...+++.--...+..++..+.+.. +..-...+.. ..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~-----~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSA-----DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC-----CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 4478999999999999999988775422 1123333222333344443332211 1111011111 11
Q ss_pred --hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 --DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 --~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.+++++ +++++|+++||+-.
T Consensus 232 ~~~~a~~iAEyfr~--~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRD--QGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHH--CCCcEEEEEeChHH
Confidence 122334445543 48999999999843
No 379
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.23 E-value=0.14 Score=56.16 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhccccc-------CCCcc-hhh-
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDFVL-------SSDES-VRD- 169 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~-~~~- 169 (824)
-..++|+|..|.|||||++.+..... .+.++...+... ....++...+...-+... .++.. ...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~------~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE------ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC------CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 35799999999999999998875321 234444444333 234555555544322110 11111 111
Q ss_pred ---hHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 170 ---NAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 170 ---~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
..-.+.+++++ +++++|+++||+-..
T Consensus 242 a~~~a~aiAEyfrd--~G~~VLl~~DslTR~ 270 (451)
T PRK05688 242 AAMYCTRIAEYFRD--KGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEecchhHH
Confidence 22334455543 589999999998543
No 380
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.22 E-value=0.16 Score=53.89 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.9
Q ss_pred EEEEcCCCChHhHHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
+.+.|++|.||||+|+.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998875
No 381
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.21 E-value=0.24 Score=50.21 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKI 153 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 153 (824)
..-+++.|+|.+|.||||+|.++......+ =..++|++..+. ..++.+++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCCC--HHHHHHHH
Confidence 345799999999999999999986543221 236788888654 45555554
No 382
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.20 E-value=0.036 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
||.|+|..|.||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.19 E-value=0.039 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+|+|.|..|.||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988653
No 384
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.18 E-value=0.099 Score=54.98 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
.+++.+.|.||+||||+|.+..-..... ...++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~----g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES----GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc----CCcEEEEEeCCCCchHhhhcc
Confidence 4799999999999999999977665542 234677777777776666654
No 385
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.18 E-value=0.089 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-.+++|+|..|.|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999998754
No 386
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.15 E-value=0.27 Score=54.19 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=55.6
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhh---hccccceEEEEEeCCcCCHHHHHHHHHHhccc-cc-------CCCcc-h
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQ---YRSHFNTFIWVEASYEDDLKELQIKIARKIDF-VL-------SSDES-V 167 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~-------~~~~~-~ 167 (824)
.-++|+|-.|+|||||| -.+.|..... -.+.-+.++++-+.+......-+.+.+++-+. +. .++.. .
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46789999999999997 5566654210 01234567888888876654445555554431 10 11111 1
Q ss_pred h----hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 168 R----DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 168 ~----~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
. .....+.+++++ +++.+|+|+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 1 123344455553 48999999999853
No 387
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.14 E-value=0.066 Score=52.83 Aligned_cols=121 Identities=10% Similarity=0.097 Sum_probs=61.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcch---hhhHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESV---RDNAILL 174 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l 174 (824)
...+++.|.|+.|.||||+.+.+.--.-- ...-.+|.... ....+...|...++......... ......+
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~ 99 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSET 99 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHH
Confidence 44589999999999999999998754311 11112221111 11122333333333221111110 1111222
Q ss_pred HHHHHHHHcCCeEEEEEeCCCcc---cc-----cchhcCCCCCCCcEEEEEcCChhhhhccc
Q 048180 175 ENALQTLLETGKILLILDNMRKA---FS-----LEEIGIPTLSNSLRIIITSPSSSLCRQMK 228 (824)
Q Consensus 175 ~~~l~~~l~~kr~LlVlDdv~~~---~~-----~~~l~~~~~~~gs~IivTTr~~~v~~~~~ 228 (824)
...+. +..++-|+++|..-.- .+ +..+ ..+...|..+|+||-+..++....
T Consensus 100 ~~il~--~~~~~~lvllDE~~~gt~~~~~~~l~~~il-~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 100 AYILD--YADGDSLVLIDELGRGTSSADGFAISLAIL-ECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHH--hcCCCcEEEeccccCCCCHHHHHHHHHHHH-HHHHhcCCEEEEECChHHHHHHhh
Confidence 22222 2256789999997332 11 1111 112234789999999988877543
No 388
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.11 E-value=0.63 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-|-|+|..|.||+.+|+.+++.
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHC
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 3449999999999999999884
No 389
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.10 E-value=0.38 Score=52.84 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=55.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHHhccccc------CCCcc--hhhhH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIARKIDFVL------SSDES--VRDNA 171 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~--~~~~~ 171 (824)
.-++|+|..|+|||||+..+....... +=..++++-+.+.. .+.+++.++...-.... ..+.. .....
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~---~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKE---HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhc---CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 568999999999999999998775432 11366777775553 35667666654311110 01111 11122
Q ss_pred HHHHHHHHHHH---cCCeEEEEEeCCCcc
Q 048180 172 ILLENALQTLL---ETGKILLILDNMRKA 197 (824)
Q Consensus 172 ~~l~~~l~~~l---~~kr~LlVlDdv~~~ 197 (824)
....-.+.+++ +++++|+|+||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 22223344444 478999999998543
No 390
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.07 E-value=0.22 Score=54.55 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhccc-------ccCCCcch-h-
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDF-------VLSSDESV-R- 168 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~~-~- 168 (824)
.-..++|+|..|.|||||++.+.+... .+..+++.+.+. ..+.+++.+....-.. ...+.... .
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~------~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD------ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC------CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 346889999999999999998876432 444555555443 3344555554321100 00011110 1
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
...-.+.++++. +||++|+++||+-..
T Consensus 228 ~a~~~a~tiAEyfrd--~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 228 RALFVATTIAEFFRD--NGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHH--CCCcEEEEEeCHHHH
Confidence 112334455543 489999999998543
No 391
>PRK06217 hypothetical protein; Validated
Probab=94.05 E-value=0.041 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.|.|.|++|.||||+|+++.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 392
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.2 Score=54.84 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCH-HHHHHHHHHh-ccc-----ccCCC-cchh---
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDL-KELQIKIARK-IDF-----VLSSD-ESVR--- 168 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~~i~~~-l~~-----~~~~~-~~~~--- 168 (824)
-..++|+|..|+|||||++.+..... -+..+...+.+.... .++....+.. +.. ...++ ....
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~------~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~ 230 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL------APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG 230 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC------CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH
Confidence 35889999999999999999986532 233444444444332 3333332221 100 00001 0011
Q ss_pred -hhHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 169 -DNAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 169 -~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
.....+.+++++ +++++|+++||+-..
T Consensus 231 ~~~a~~iAEyFrd--~G~~Vll~~DslTr~ 258 (434)
T PRK08472 231 AFCAMSVAEYFKN--QGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHHHHHHHHHH--cCCCEEEecccchHH
Confidence 123345555553 489999999998543
No 393
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.03 E-value=0.15 Score=56.30 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhccc-------ccCCCcc-hh--
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDF-------VLSSDES-VR-- 168 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~-~~-- 168 (824)
-..++|+|..|.|||||++.+...... +..+...+... ....++..+.+..-.. ...+... ..
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~~~------~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~ 236 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNTEA------DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLK 236 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC------CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 357899999999999999988765322 22233333332 2344444444332110 0011111 11
Q ss_pred --hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 --DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 --~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.+++++ +|+.+|+++||+-.
T Consensus 237 ~~~~a~t~AE~frd--~G~~Vll~~DslTr 264 (440)
T TIGR01026 237 GAYVATAIAEYFRD--QGKDVLLLMDSVTR 264 (440)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEeChHH
Confidence 112223344442 48999999999854
No 394
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.21 Score=49.16 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=35.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIA 154 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 154 (824)
..|+|=|.-|.||||.++.++.....+ ...++|..-.......+.+++++
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~----g~~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEER----GIKVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCCChHHHHHHHHH
Confidence 579999999999999999999998763 22455554444433444444444
No 395
>PRK13949 shikimate kinase; Provisional
Probab=93.96 E-value=0.045 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-|.|+|+.|.||||+|+.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 396
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.95 E-value=0.32 Score=53.82 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=53.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhc-cccceEEEEEeCCcCC-HHHHHHHHHHhccccc-------CCC-cchhhh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYR-SHFNTFIWVEASYEDD-LKELQIKIARKIDFVL-------SSD-ESVRDN 170 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~-~~~~~~ 170 (824)
.-++|+|-.|+|||||+..+.+.....-. +.| .++++-+.+... +.+++.++...-.... .+. ......
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~-v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEF-AVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCce-EEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 56899999999999999999886532100 111 567777766543 4566666654321110 111 111111
Q ss_pred HHHHHHHHHHHHc---CCeEEEEEeCCCc
Q 048180 171 AILLENALQTLLE---TGKILLILDNMRK 196 (824)
Q Consensus 171 ~~~l~~~l~~~l~---~kr~LlVlDdv~~ 196 (824)
.....-.+.++++ ++++|+++||+-.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 2222223344443 8899999999854
No 397
>PRK13947 shikimate kinase; Provisional
Probab=93.94 E-value=0.046 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
-|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 398
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.93 E-value=0.3 Score=54.20 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=52.9
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhhhccccce-EEEEEeCCcCC-HHHHHHHHHHhccccc-------CCCcc-hh-
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQYRSHFNT-FIWVEASYEDD-LKELQIKIARKIDFVL-------SSDES-VR- 168 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~-~~- 168 (824)
.-++|+|-.|+|||||| ..+.+... -+. ++++-+.+... +.++..++...=.... .++.. ..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~~------~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQKG------RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhcC------CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 56899999999999997 46766521 354 67888877644 4556666554321110 11111 11
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
.....+.++++. +||.+|||+||+-.
T Consensus 237 ~ap~~a~aiAEyfrd--~G~~VLlv~DdlTr 265 (497)
T TIGR03324 237 IAPYAATSIGEHFME--QGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEEcChhH
Confidence 122334445542 58999999999854
No 399
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.15 Score=56.56 Aligned_cols=151 Identities=15% Similarity=0.195 Sum_probs=83.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
...=|-+||++|+|||-||++|+|..... |++|..+ +++..-. .+....+++.+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N---------FisVKGP----ELlNkYV-------------GESErAVR~vF 597 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN---------FISVKGP----ELLNKYV-------------GESERAVRQVF 597 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc---------eEeecCH----HHHHHHh-------------hhHHHHHHHHH
Confidence 34567799999999999999999986543 3455443 2222211 11123344445
Q ss_pred HHHHcCCeEEEEEeCCCccc-------cc------chhc---CCCCC-CCcEEEEEcCChhhhh--ccc---cccccccC
Q 048180 179 QTLLETGKILLILDNMRKAF-------SL------EEIG---IPTLS-NSLRIIITSPSSSLCR--QMK---CRERFALN 236 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~-------~~------~~l~---~~~~~-~gs~IivTTr~~~v~~--~~~---~~~~~~l~ 236 (824)
++.=..-.+.|.||.++..- .| +.+. ..... .|--||-.|-..++.. ... -+...-+.
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 44445678999999986431 12 1111 11111 2334454444444422 111 23456677
Q ss_pred CCChHHHHHHHHHHhcCcCC--CCchhHHHHHHHHHHHhCCCh
Q 048180 237 LLTDEEAYLLLINEVGLAGK--VLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~--~~~~~~~~~~~~i~~~c~GlP 277 (824)
.-+.+|=..+++...-.... ..+-.++++|+. .+|.|.-
T Consensus 678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 77788888888887763221 233456666553 3565543
No 400
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.84 E-value=0.26 Score=50.85 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=27.0
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+..+|.|+|.+|.|||||...+.+....
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 567999999999999999999999988654
No 401
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.83 E-value=0.28 Score=54.13 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=51.0
Q ss_pred eEEEEEcCCCChHhHHHHH-HHHHHHhhhccccceE-EEEEeCCcCC-HHHHHHHHHHhccccc-----C-CCcch--h-
Q 048180 101 VVLGVCGASGVGKTEAGAH-VYNRILNQYRSHFNTF-IWVEASYEDD-LKELQIKIARKIDFVL-----S-SDESV--R- 168 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~-v~~~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~-~~~~~--~- 168 (824)
.-++|+|-.|+||||||.. +.+.. .-+.+ +++-+.+... +.++..++...=.... . .+... .
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~------~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK------GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc------cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 4689999999999999654 44431 13444 7777766543 4556655554321110 0 01111 1
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
.....+.++++. +|+++|+|+||+-.
T Consensus 216 ~ap~~a~aiAEyfr~--~G~~VLlv~DdlTr 244 (485)
T CHL00059 216 LAPYTGAALAEYFMY--RGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHHhhHHHHHHH--cCCCEEEEEcChhH
Confidence 112334555553 48999999999854
No 402
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.81 E-value=0.052 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
++|.+.|++|.||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998764
No 403
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.81 E-value=0.079 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
||+|.|-||+||||+|..+......
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~ 26 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK 26 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999887754
No 404
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.80 E-value=0.059 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHh
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
|.|.|.+|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998854
No 405
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.80 E-value=0.044 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
++|+|+|+.|.||||||+.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999875
No 406
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.79 E-value=0.13 Score=51.96 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIA 154 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 154 (824)
.-.++.|.|.+|.|||++|.++......+ .=..++||+..++ ..++.+.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~---~ge~vlyvs~ee~--~~~l~~~~~ 68 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN---FGEKVLYVSFEEP--PEELIENMK 68 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH---HT--EEEEESSS---HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh---cCCcEEEEEecCC--HHHHHHHHH
Confidence 45799999999999999999866543221 0124678877554 455555543
No 407
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.79 E-value=0.045 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
+|.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4779999999999999999776
No 408
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.79 E-value=0.16 Score=52.37 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=29.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
-|-+.|.+|+|||++|+.+.+.... ..++++.....+..+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVG 65 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhh
Confidence 3458999999999999999874311 245566666655555543
No 409
>PRK14530 adenylate kinase; Provisional
Probab=93.77 E-value=0.053 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.|.|+|++|.||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 410
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.76 E-value=0.14 Score=50.16 Aligned_cols=27 Identities=22% Similarity=0.184 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-+++.|.|.+|.||||+++.+......
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 368889999999999999999887655
No 411
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.76 E-value=0.35 Score=58.48 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....++-++|+.|+|||.+|+.+....
T Consensus 594 ~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 594 KPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345688999999999999999998775
No 412
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.74 E-value=0.96 Score=51.78 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.-|-|+|..|+||||+|+.+++...
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999987643
No 413
>PRK04328 hypothetical protein; Provisional
Probab=93.73 E-value=0.22 Score=50.95 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
.-.++-|.|.+|.|||+||.++......+ -...+||+..+. +.++.+ .+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis~ee~--~~~i~~-~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVALEEH--PVQVRR-NMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEEeeCC--HHHHHH-HHHHcC
Confidence 35789999999999999999976653221 346788887653 444433 334443
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.70 E-value=0.083 Score=52.24 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.+++|+|..|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999843
No 415
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.69 E-value=0.11 Score=54.62 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=31.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQ 150 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 150 (824)
++|.+.|-||+||||+|.+.+-....+ + ..+.-|+.....+..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~--G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR--G--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--T--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC--C--CCeeEeecCCCccHHHHh
Confidence 689999999999999998887766542 2 234555555444444444
No 416
>PRK13975 thymidylate kinase; Provisional
Probab=93.68 E-value=0.061 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998864
No 417
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.66 E-value=0.073 Score=52.42 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
....+|+|+|++|.||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998764
No 418
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.66 E-value=0.081 Score=52.76 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=23.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|.|-||+||||++..+......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57999999999999999999888764
No 419
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.64 E-value=0.058 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998875
No 420
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.63 E-value=0.18 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999988753
No 421
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.63 E-value=0.23 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+-..++|+|..|.|||||++.+....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc
Confidence 44789999999999999999887643
No 422
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.62 E-value=0.2 Score=54.82 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhccccc------CCCcchh---
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFVL------SSDESVR--- 168 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~--- 168 (824)
+-..++|+|..|.|||||.+.+++... -+.++++-+.+... +.++..+.+..-+... ..++...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~------~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE------VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC------CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 346899999999999999999987632 34667776766543 4445544433211100 0011111
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.++++. ++|++|+++||+-.
T Consensus 235 ~a~~~a~tiAEyfrd--~G~~Vll~~DslTR 263 (439)
T PRK06936 235 KAGFVATSIAEYFRD--QGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEeccchhH
Confidence 112334555553 49999999999854
No 423
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.62 E-value=0.081 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.++.|.|+.|+|||||++.++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999999874
No 424
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.61 E-value=0.044 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=17.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHh
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
|-|+|.+|+||||+|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 568999999999999999988644
No 425
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.58 E-value=0.056 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-.+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998863
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.48 E-value=0.1 Score=44.19 Aligned_cols=25 Identities=36% Similarity=0.516 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998764
No 427
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.47 E-value=0.073 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998873
No 428
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.47 E-value=0.073 Score=52.85 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=25.4
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+.++++|+++|..|.|||||..++.+..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999998875
No 429
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.46 E-value=0.28 Score=57.33 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC--HHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD--LKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
-+||+++|+.|+||||.+.+++...... ..-..+..++.. .+. ..+.++...+.++.......+ ...+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~----~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKD----AADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCC----HHHHHHH
Confidence 4799999999999999999998765321 111234444432 232 455566666666543322222 2334444
Q ss_pred HHHHHcCCeEEEEEeCCC
Q 048180 178 LQTLLETGKILLILDNMR 195 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~ 195 (824)
++ .++++ =+|++|-.-
T Consensus 258 l~-~~~~~-D~VLIDTAG 273 (767)
T PRK14723 258 LA-ALGDK-HLVLIDTVG 273 (767)
T ss_pred HH-HhcCC-CEEEEeCCC
Confidence 43 23344 477788664
No 430
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=93.44 E-value=0.34 Score=53.98 Aligned_cols=88 Identities=13% Similarity=0.201 Sum_probs=51.0
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhhhccccceE-EEEEeCCcCC-HHHHHHHHHHhccccc-------CCCcc-hh-
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQYRSHFNTF-IWVEASYEDD-LKELQIKIARKIDFVL-------SSDES-VR- 168 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~-~~- 168 (824)
.-++|+|..|+|||||| ..+.+.. .-+.+ +++-+.+... +.++..++...=.... ..+.. ..
T Consensus 163 QR~~I~g~~g~GKt~Lal~~i~~~~------~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~ 236 (502)
T PRK13343 163 QRELIIGDRQTGKTAIAIDAIINQK------DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQY 236 (502)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhc------CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHH
Confidence 56899999999999996 5555431 14544 7777776644 4555555544311110 11111 11
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
.....+.++++. +||++|||+||+-.
T Consensus 237 ~ap~~a~aiAEyfrd--~G~~VLlv~DdlTr 265 (502)
T PRK13343 237 LAPFAGCAIAEYFRD--QGQDALIVYDDLSK 265 (502)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEecchHH
Confidence 122234455543 48999999999854
No 431
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.44 E-value=0.58 Score=46.25 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|.|+.|.||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999988654
No 432
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.43 E-value=3.6 Score=46.97 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhc-cc---cceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYR-SH---FNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~---F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
-+.+-|.|.+|.|||..+..|.+......+ +. |+ .+.|..-.-..+.++...|..++..... .....+..+.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~---~~~~al~~L~ 497 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERV---TWDAALEALN 497 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcc---cHHHHHHHHH
Confidence 458999999999999999999996652211 11 43 3445544556688999999998864322 2333444454
Q ss_pred HHHHHH-HcCCeEEEEEeCCCc
Q 048180 176 NALQTL-LETGKILLILDNMRK 196 (824)
Q Consensus 176 ~~l~~~-l~~kr~LlVlDdv~~ 196 (824)
.++... -+.+..+|++|+++.
T Consensus 498 ~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 498 FRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred HhhccCCCCCCCEEEEeccHHH
Confidence 444300 013458899998754
No 433
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.42 E-value=0.068 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
||+|+|+.|.||||++.++....+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999998754
No 434
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.41 E-value=0.055 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998763
No 435
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.40 E-value=0.2 Score=51.80 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=41.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
..-+++.|+|.+|.|||++|.++....... ...++||+..+. ..++.+.+.+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 456899999999999999999998876542 778999988764 4555555443 44
No 436
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=93.38 E-value=0.36 Score=54.09 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=52.9
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhhhccccceE-EEEEeCCcCC-HHHHHHHHHHhcccc-------cCCCcc-hh-
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQYRSHFNTF-IWVEASYEDD-LKELQIKIARKIDFV-------LSSDES-VR- 168 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~-~~- 168 (824)
.-++|.|-.|+|||||| ..+.+.. ..+.+ +++-+.+... +.++..++...=... ..++.. ..
T Consensus 162 Qr~~I~g~~g~GKt~Lal~~i~~~~------~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 162 QRELIIGDRQTGKTAVAIDTIINQK------DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred CEEEeecCCCCCccHHHHHHHHhhc------CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 56899999999999996 5555542 14554 7787777544 456666665432111 011111 11
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
.....+.++++. +||.+|||+||+-..
T Consensus 236 ~a~~~a~aiAEyfrd--~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 236 LAPYTGCTMAEYFRD--NGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEecchHHH
Confidence 123334455544 489999999998543
No 437
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.36 E-value=0.067 Score=55.84 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=23.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+.|+|+|-||+||||+|..++.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 47999999999999999999988765
No 438
>PRK05439 pantothenate kinase; Provisional
Probab=93.35 E-value=0.41 Score=50.13 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=25.1
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
....-+|||.|.+|+||||+|+.+.....
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999987653
No 439
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.34 E-value=0.064 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-.++||+|..|.||||||+.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999997643
No 440
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.34 E-value=0.16 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+|.+.|.-|.||||+++.+.....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 441
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.31 E-value=0.54 Score=44.55 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=61.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceE--EEEEeCCcCCHHHHHHHHHHhcc-----cc--cCC--Ccchhh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTF--IWVEASYEDDLKELQIKIARKID-----FV--LSS--DESVRD 169 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~--~wv~~s~~~~~~~~~~~i~~~l~-----~~--~~~--~~~~~~ 169 (824)
..|-|++-.|.||||.|..+.-+...+ + +.+. =|+.-........++... .+. .. ... ......
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~--g-~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH--G-KKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC--C-CeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 578888889999999999988876542 1 2221 133322233444454443 111 10 001 111112
Q ss_pred hHHHHHHHHHHHHcCCe-EEEEEeCCCcccccc-----hhc--CCCCCCCcEEEEEcCCh
Q 048180 170 NAILLENALQTLLETGK-ILLILDNMRKAFSLE-----EIG--IPTLSNSLRIIITSPSS 221 (824)
Q Consensus 170 ~~~~l~~~l~~~l~~kr-~LlVlDdv~~~~~~~-----~l~--~~~~~~gs~IivTTr~~ 221 (824)
.+....+..++.+...+ =|||||.+-..-.+. .+. +.....+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 23334444555555555 599999985443222 221 12223445899999984
No 442
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.29 E-value=0.078 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..|.|+|+.|.||||+|+.+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999998874
No 443
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.25 E-value=0.56 Score=49.46 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=35.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIA 154 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~ 154 (824)
..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~------~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS------NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC------CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 478999999999999999998853 235678887766543 455666643
No 444
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.25 E-value=0.48 Score=51.87 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+-.+|+++|..|+||||++..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887754
No 445
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.21 E-value=0.13 Score=51.63 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=29.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD 145 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 145 (824)
+.|+|+|-|||||+|.+..+.--.... -..+.-|-...+.|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~----G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM----GKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc----cceeeEecccCCCc
Confidence 579999999999999999998877653 23456665444433
No 446
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.32 Score=56.65 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=47.8
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLEN 176 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 176 (824)
+..+.+.-.+|+.|+|||.||++++...-.. . +..+-+.+|.-.... .+.+-+|....-- .-+ .-..|-+
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-e---~aliR~DMSEy~EkH----sVSrLIGaPPGYV-Gye-eGG~LTE 587 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEALFGD-E---QALIRIDMSEYMEKH----SVSRLIGAPPGYV-GYE-EGGQLTE 587 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHHHhcCC-C---ccceeechHHHHHHH----HHHHHhCCCCCCc-eec-cccchhH
Confidence 3456778889999999999999998875211 0 344544444432111 1222222211100 000 0123444
Q ss_pred HHHHHHcCCeE-EEEEeCCCcc
Q 048180 177 ALQTLLETGKI-LLILDNMRKA 197 (824)
Q Consensus 177 ~l~~~l~~kr~-LlVlDdv~~~ 197 (824)
.+ +.|.| +|.||.|...
T Consensus 588 aV----Rr~PySViLlDEIEKA 605 (786)
T COG0542 588 AV----RRKPYSVILLDEIEKA 605 (786)
T ss_pred hh----hcCCCeEEEechhhhc
Confidence 44 48877 8889999765
No 447
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.17 E-value=1.2 Score=46.16 Aligned_cols=148 Identities=22% Similarity=0.151 Sum_probs=80.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCH-HHHHHHHHHhccccc----CCCcchhhhHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDL-KELQIKIARKIDFVL----SSDESVRDNAILLE 175 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~ 175 (824)
.-+.|+|+.|.|||+|.-.+..+... +.++| .-|........ +-.++.|..|+.... ....+-.+....+.
T Consensus 50 nsviiigprgsgkT~li~~~Ls~~q~-~~E~~---l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL 125 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSDIQE-NGENF---LLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLL 125 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhhHHh-cCCeE---EEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHH
Confidence 45678999999999998887777322 23333 33444444333 335566666654322 11222333344444
Q ss_pred HHHHHHHc--CCeEEEEEeCCCcccc-------cchh--cCCCCCCCcEEEEEcCChhh-------hhccccccccccCC
Q 048180 176 NALQTLLE--TGKILLILDNMRKAFS-------LEEI--GIPTLSNSLRIIITSPSSSL-------CRQMKCRERFALNL 237 (824)
Q Consensus 176 ~~l~~~l~--~kr~LlVlDdv~~~~~-------~~~l--~~~~~~~gs~IivTTr~~~v-------~~~~~~~~~~~l~~ 237 (824)
..|+.--+ +-+++.|+|..+-.-. .+.+ ...-..+-+-|-+|||-.-. -+.+.-..+|-++.
T Consensus 126 ~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~ 205 (408)
T KOG2228|consen 126 EALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPS 205 (408)
T ss_pred HHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCC
Confidence 44432111 2357888887754321 1111 11122344577789997432 22332233666788
Q ss_pred CChHHHHHHHHHHhc
Q 048180 238 LTDEEAYLLLINEVG 252 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~ 252 (824)
++.++...++++...
T Consensus 206 ~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 206 LPLGDYVDLYRKLLS 220 (408)
T ss_pred CChHHHHHHHHHHhc
Confidence 888888888887764
No 448
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.81 Score=52.42 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
..=|-.+|++|.|||-+|++|+-... ..|++|..+ +++.--+. ..+ .-+++.+.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcs---------L~FlSVKGP----ELLNMYVG----------qSE---~NVR~VFe 758 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECS---------LNFLSVKGP----ELLNMYVG----------QSE---ENVREVFE 758 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhce---------eeEEeecCH----HHHHHHhc----------chH---HHHHHHHH
Confidence 45677899999999999999988743 245666554 22221111 112 22444444
Q ss_pred HHHcCCeEEEEEeCCCcc
Q 048180 180 TLLETGKILLILDNMRKA 197 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~ 197 (824)
+.=.-+.+.|.||.+++.
T Consensus 759 rAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 759 RARSAAPCVIFFDELDSL 776 (953)
T ss_pred HhhccCCeEEEecccccc
Confidence 333578899999998764
No 449
>PRK13946 shikimate kinase; Provisional
Probab=93.15 E-value=0.071 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+.|.++|+.|.||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999886
No 450
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=93.14 E-value=0.35 Score=53.24 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC-cCCHHHHHHHHHHhccccc-----CC-Ccchh---
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY-EDDLKELQIKIARKIDFVL-----SS-DESVR--- 168 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~-~~~~~--- 168 (824)
.-..++|+|..|.|||||.+.+..... -+..+.+.+.. ...+.++..+......... .. .....
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~~~------~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARGAS------ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCCCC------CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 346789999999999999999987532 23334344433 3344455544443221100 00 01111
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.+++++ +++++|+++|++-.
T Consensus 218 ~~~~~a~~~AE~f~~--~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 218 KAAYTATAIAEYFRD--QGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHHHH--CCCcEEEEEeCchH
Confidence 111223333332 47899999999853
No 451
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.14 E-value=0.076 Score=51.64 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHhHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~ 122 (824)
|+.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 452
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.61 Score=53.26 Aligned_cols=131 Identities=13% Similarity=0.066 Sum_probs=74.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+.+-++|++|.|||.||+++++..... |-.+. .. +++... ..+....+++.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~----fi~v~-----~~----~l~sk~-------------vGesek~ir~~ 327 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSR----FISVK-----GS----ELLSKW-------------VGESEKNIREL 327 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCe----EEEee-----CH----HHhccc-------------cchHHHHHHHH
Confidence 456689999999999999999999964332 32222 11 111110 11122344555
Q ss_pred HHHHHcCCeEEEEEeCCCcccccc---------hh----cCCC--CCCCc--EEEEEcCChhhhhc-----ccccccccc
Q 048180 178 LQTLLETGKILLILDNMRKAFSLE---------EI----GIPT--LSNSL--RIIITSPSSSLCRQ-----MKCRERFAL 235 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~~~~---------~l----~~~~--~~~gs--~IivTTr~~~v~~~-----~~~~~~~~l 235 (824)
+...-+.....|.+|.++....+. .+ .... ....+ .||-||-....... ..-...+.+
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v 407 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYV 407 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeec
Confidence 555556888999999986543221 11 1111 11222 33334433322211 122457888
Q ss_pred CCCChHHHHHHHHHHhcCc
Q 048180 236 NLLTDEEAYLLLINEVGLA 254 (824)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~ 254 (824)
..-+.++..+.|..+....
T Consensus 408 ~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 408 PLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred CCCCHHHHHHHHHHHhccc
Confidence 8889999999999988643
No 453
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=93.12 E-value=0.42 Score=53.58 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=50.8
Q ss_pred eEEEEEcCCCChHhHHHH-HHHHHHHhhhccccceE-EEEEeCCcCC-HHHHHHHHHHhccccc-------CCCcc-hh-
Q 048180 101 VVLGVCGASGVGKTEAGA-HVYNRILNQYRSHFNTF-IWVEASYEDD-LKELQIKIARKIDFVL-------SSDES-VR- 168 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~-~~- 168 (824)
.-++|+|-.|+||||||. .+.+.. .-+.+ +++.+.+... +.++..++...=.... .++.. ..
T Consensus 163 Qr~~Ifg~~g~GKt~lal~~i~~~~------~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~ 236 (502)
T PRK09281 163 QRELIIGDRQTGKTAIAIDTIINQK------GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQY 236 (502)
T ss_pred cEEEeecCCCCCchHHHHHHHHHhc------CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHH
Confidence 568999999999999964 344432 13443 7777777654 3455555544211100 11111 11
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
...-.+.++++.. |+++|+|+||+-..
T Consensus 237 ~a~~~a~tiAEyfrd~--G~~VLli~DdlTr~ 266 (502)
T PRK09281 237 LAPYAGCAMGEYFMDN--GKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEEecCchHH
Confidence 1233344555543 89999999998543
No 454
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=0.014 Score=55.35 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=54.3
Q ss_pred hhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcc-ccCcccCCCccEEEecCCCCcCC
Q 048180 727 WCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFM-YSGEAQCDFVQTIGIWSCCKLER 802 (824)
Q Consensus 727 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~-~~~~~~lpsL~~L~i~~C~~L~~ 802 (824)
+..++.++.|.+.+|..+.+..-+.. .+.+|+|+.|+|++|+.+++- -..+..+++|+.|.|++.+....
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l------~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERL------GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHh------cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 56788889999999998887763321 226799999999999998765 23577899999999998665554
No 455
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.11 E-value=0.12 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHh
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
|+|+|-||+||||+|..+......
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~ 26 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALAR 26 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 889999999999999999888764
No 456
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.10 E-value=0.069 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.+|.|+|+.|.|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999765
No 457
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.08 E-value=0.28 Score=43.43 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=25.1
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+++.-|++.+|..|+|||.+|+.+++..
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5678999999999999999999998873
No 458
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.08 E-value=0.35 Score=53.95 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-cchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD-ESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l 178 (824)
-.++-|.|.+|+|||||+.++......+ -..++|++..+. ..++... ++.++.....- -..+...+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~----g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA----GGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 4699999999999999999998876431 224677775443 3333322 44444321110 00111233333333
Q ss_pred HHHHcCCeEEEEEeCCCc
Q 048180 179 QTLLETGKILLILDNMRK 196 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~ 196 (824)
+ +.+.-+||+|.+..
T Consensus 153 ~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 153 E---EEKPDLVVIDSIQT 167 (446)
T ss_pred H---hhCCCEEEEechhh
Confidence 3 23455778887643
No 459
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.07 E-value=0.78 Score=48.67 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.9
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+..+|+|.|.+|+|||||+..+......
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999998887754
No 460
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.06 E-value=0.16 Score=61.67 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++.++|+.|+|||++|+.+....
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 461
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.06 E-value=0.082 Score=47.01 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 462
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.05 E-value=0.078 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
||.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 463
>PLN02924 thymidylate kinase
Probab=93.04 E-value=0.49 Score=47.22 Aligned_cols=54 Identities=9% Similarity=0.114 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIAR 155 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 155 (824)
.-..|+|-|..|.||||+|+.+++....+ .+....+-.........+.+++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~---g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL---GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCCceeeeCCCCCChHHHHHHHHHh
Confidence 34689999999999999999999988652 2443322222222334445555554
No 464
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.03 E-value=0.2 Score=54.91 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC-cCCHHHHHHHHHHhccc-------ccCCCcc-h--
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY-EDDLKELQIKIARKIDF-------VLSSDES-V-- 167 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~-------~~~~~~~-~-- 167 (824)
.-..++|+|..|.|||||.+.+.+.... +.++...+.. ..+..++..+++..-.. ...++.. .
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~~~------d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~ 247 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQA------DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRM 247 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCCCC------CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHH
Confidence 3467999999999999999988765322 2222222222 22344444444332110 0011111 0
Q ss_pred --hhhHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 168 --RDNAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 168 --~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
....-.+.+++++ ++|.+|+++||+-..
T Consensus 248 ~~~~~a~tiAEyfrd--~G~~Vll~~DslTr~ 277 (455)
T PRK07960 248 QGAAYATRIAEDFRD--RGQHVLLIMDSLTRY 277 (455)
T ss_pred HHHHHHHHHHHHHHH--cCCCeEEEecchhHH
Confidence 1112234455553 489999999998543
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.02 E-value=0.086 Score=45.47 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVY 121 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~ 121 (824)
.-.+++|+|+.|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34789999999999999999975
No 466
>PLN02200 adenylate kinase family protein
Probab=93.00 E-value=0.097 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....+|.|+|++|.||||+|+.+....
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998753
No 467
>PRK06820 type III secretion system ATPase; Validated
Probab=93.00 E-value=0.24 Score=54.33 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=47.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHHhccc------ccCCCcch--hh--
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIARKIDF------VLSSDESV--RD-- 169 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~------~~~~~~~~--~~-- 169 (824)
..++|+|..|+|||||++.+..... -+..+...+.+.. .+.++..+.+..-.. ....+... ..
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~~~------~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a 237 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCADSA------ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKG 237 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhccCC------CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHH
Confidence 5789999999999999998876432 2344444444442 223333332221000 00001111 11
Q ss_pred --hHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 170 --NAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 170 --~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
..-.+.+++++ +|+++|+++||+-.
T Consensus 238 ~~~a~tiAEyfrd--~G~~VLl~~Dsltr 264 (440)
T PRK06820 238 LSTATTIAEYFRD--RGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEccchhH
Confidence 22234445543 48999999999854
No 468
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.97 E-value=0.11 Score=50.33 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeC
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEAS 141 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s 141 (824)
.++|.|+|+.|+|||||++.+...... .|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~----~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD----KFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT----TEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc----ccccceeeccc
Confidence 478999999999999999999987533 37555655543
No 469
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.97 E-value=0.068 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
|.|+|+.|.||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998764
No 470
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.96 E-value=0.092 Score=52.17 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=26.6
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQ 127 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 127 (824)
.++...|-++||+|.||||..|.++.....+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 3456788899999999999999999987764
No 471
>PRK14527 adenylate kinase; Provisional
Probab=92.96 E-value=0.093 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...+|.|+|++|.||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 472
>PLN02348 phosphoribulokinase
Probab=92.89 E-value=0.11 Score=55.72 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.2
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+...+|||.|.+|.||||+|+.+.+....
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999988643
No 473
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.89 E-value=0.16 Score=60.69 Aligned_cols=189 Identities=21% Similarity=0.123 Sum_probs=90.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcc---hhhhHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDES---VRDNAILLE 175 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~ 175 (824)
+.+++.|.|+.+-||||+.+.+.--.-- .++-++|...... ...++..|...++....-... -......+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m-----aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~ 399 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM-----AKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIV 399 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH-----HHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHH
Confidence 4578999999999999999999644211 1122233322110 011111121111111000000 011112222
Q ss_pred HHHHHHHcCCeEEEEEeCCCcccccc---hhc----CCCCCCCcEEEEEcCChhhhhccccccc---cccCCCChHHHHH
Q 048180 176 NALQTLLETGKILLILDNMRKAFSLE---EIG----IPTLSNSLRIIITSPSSSLCRQMKCRER---FALNLLTDEEAYL 245 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv~~~~~~~---~l~----~~~~~~gs~IivTTr~~~v~~~~~~~~~---~~l~~L~~~~~~~ 245 (824)
..++. + +++-|+++|..-.-.+.. .+. ......|+.+|+||....++........ ..+.. +. +.
T Consensus 400 ~Il~~-~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d~-~~-- 473 (782)
T PRK00409 400 RILEK-A-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF-DE-ET-- 473 (782)
T ss_pred HHHHh-C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-ec-Cc--
Confidence 22221 1 477899999986443211 111 1122357899999999887654322211 11111 11 11
Q ss_pred HHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHh
Q 048180 246 LLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELD 307 (824)
Q Consensus 246 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~ 307 (824)
+-..+-...+. + -...|-.|++++ |+|-.+..-|..+. .......+.+++.+..
T Consensus 474 l~~~Ykl~~G~-~---g~S~a~~iA~~~-Glp~~ii~~A~~~~---~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 474 LRPTYRLLIGI-P---GKSNAFEIAKRL-GLPENIIEEAKKLI---GEDKEKLNELIASLEE 527 (782)
T ss_pred CcEEEEEeeCC-C---CCcHHHHHHHHh-CcCHHHHHHHHHHH---hhhhhHHHHHHHHHHH
Confidence 10001111111 1 123466677766 89999988888765 3345567777766654
No 474
>PRK13948 shikimate kinase; Provisional
Probab=92.85 E-value=0.1 Score=50.23 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...+.|.++||.|.||||+++.+.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998875
No 475
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.83 E-value=0.18 Score=56.43 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=25.9
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...-+++.++|++|+||||||+.+.+-.+.
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 345579999999999999999999997654
No 476
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=92.81 E-value=0.42 Score=48.93 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=33.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccc-------eEEEEEeCCc-CCHHHHHHHHHHhccc
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFN-------TFIWVEASYE-DDLKELQIKIARKIDF 159 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-------~~~wv~~s~~-~~~~~~~~~i~~~l~~ 159 (824)
++.|+|.||+|||||+-..+=..... ++.|. .+++|+.-.. .++.+=++.+..+.+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG-~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAG-KNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGL 155 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhh-HHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCC
Confidence 44466999999999998777544332 44454 3455544322 2233344456666553
No 477
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.79 E-value=0.32 Score=48.76 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
.+..+|||.|++|.||+||.-.+...... +++=-.++=|.-|.+++--.++-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~--~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRE--RGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHH--TT--EEEEEE-GGGGCC---SS-
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhh--cCCceEEEEECCCCCCCCCcccc
Confidence 45789999999999999999999888765 22212334444555665544444
No 478
>PRK04182 cytidylate kinase; Provisional
Probab=92.77 E-value=0.095 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+|.|.|+.|.||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998874
No 479
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.21 Score=50.77 Aligned_cols=29 Identities=24% Similarity=0.163 Sum_probs=25.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.....++|||++|-|||-+|+.|+.....
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCC
Confidence 45788999999999999999999988654
No 480
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.69 E-value=0.1 Score=51.69 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.4
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
....++|.|+|++|+|||||++.+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 456789999999999999999999754
No 481
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.67 E-value=0.61 Score=48.46 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=57.6
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCH--HHHHHHHHHhcccccCCCcchhhhHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDL--KELQIKIARKIDFVLSSDESVRDNAILL 174 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l 174 (824)
++++.||-+||..|+||||-..++++.... +.+ .+-+...+.|-. .+-++...+.++..........+.+...
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~---~g~--~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQ---QGK--SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHH---CCC--eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHH
Confidence 456999999999999999887777777654 223 444555555543 4455566666665443322233344455
Q ss_pred HHHHHHHHcCCeEEEEEeCCC
Q 048180 175 ENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 175 ~~~l~~~l~~kr~LlVlDdv~ 195 (824)
.+.++..-..+-=++++|-.-
T Consensus 211 fDAi~~Akar~~DvvliDTAG 231 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred HHHHHHHHHcCCCEEEEeCcc
Confidence 666654444555577777653
No 482
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.67 E-value=0.13 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|+|..|.|||||+..+......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999988754
No 483
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.64 E-value=0.1 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+.|.|+|+.|.||||+|+.+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999875
No 484
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.63 E-value=0.074 Score=29.01 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=6.8
Q ss_pred CccEEeccCCCCcccC
Q 048180 540 ELMVLDVSGSGIAEFP 555 (824)
Q Consensus 540 ~L~~L~l~~~~l~~lp 555 (824)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666665555554
No 485
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.63 E-value=0.5 Score=52.75 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY 142 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 142 (824)
.-.++.|.|.+|+|||||+.++....... =..++||+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~----g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN----QMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECcC
Confidence 34789999999999999999998765431 12467776543
No 486
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.63 E-value=0.097 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.6
Q ss_pred EEEEcCCCChHhHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~ 123 (824)
|+|+|..|.|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 487
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.63 E-value=0.1 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
..+|||+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998755
No 488
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.62 E-value=0.11 Score=50.41 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
+.++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 489
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.62 E-value=6.3 Score=41.67 Aligned_cols=49 Identities=20% Similarity=0.113 Sum_probs=32.5
Q ss_pred ccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 232 RFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
++++.+++.+|+..++..+.-..--.....-+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6789999999999998877643321111223345566777778998543
No 490
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.58 E-value=0.42 Score=56.13 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-----CcchhhhHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-----DESVRDNAIL 173 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~ 173 (824)
.-+++=|+|.+|+||||||.+++...... =..++||...+.++. ..+++++.+... ....++
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~----G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~---- 125 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA----GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQ---- 125 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHH----
Confidence 45788899999999999998866543221 245799988777774 366666654321 112222
Q ss_pred HHHHHHHHHc-CCeEEEEEeCCC
Q 048180 174 LENALQTLLE-TGKILLILDNMR 195 (824)
Q Consensus 174 l~~~l~~~l~-~kr~LlVlDdv~ 195 (824)
....+...++ ++--|||+|-+-
T Consensus 126 ~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 126 ALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHHHHhhcCCCeEEEEcchh
Confidence 2222333333 456789999875
No 491
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.58 E-value=0.12 Score=48.38 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+|++|+|+-|.|||||...+....+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~ 28 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA 28 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHh
Confidence 479999999999999999999998876
No 492
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.58 E-value=0.21 Score=52.01 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=22.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|.|-||+||||+|..+......
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 57888899999999999999888754
No 493
>PRK13973 thymidylate kinase; Provisional
Probab=92.57 E-value=0.55 Score=46.81 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..|+|-|..|.||||+++.++.....
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~ 29 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRA 29 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999998865
No 494
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=92.55 E-value=0.64 Score=51.59 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=55.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhc-cccceEEEEEeCCcCC-HHHHHHHHHHhccccc-------C-CCcchhhh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYR-SHFNTFIWVEASYEDD-LKELQIKIARKIDFVL-------S-SDESVRDN 170 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~-~~~~~~~~ 170 (824)
.-++|.|-.|+|||||+..+.+.....=+ +.| .++++-+.+... +.+++.++...-.... . ........
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 56789999999999999999887532100 011 567777766544 5566666665321110 1 11111112
Q ss_pred HHHHHHHHHHHHc---CCeEEEEEeCCCc
Q 048180 171 AILLENALQTLLE---TGKILLILDNMRK 196 (824)
Q Consensus 171 ~~~l~~~l~~~l~---~kr~LlVlDdv~~ 196 (824)
.-...-.+.++++ ++++|+++||+-.
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 2222333444543 6999999999843
No 495
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.54 E-value=0.32 Score=49.52 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=38.3
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
..+..||||.|.||+||+||.-.+-..+.. ++|==.++=|.-|.+++--.++-+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~--~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRE--RGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHH--CCcEEEEEEECCCCCCCCcccccc
Confidence 466789999999999999999999888765 344233444555666665444443
No 496
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.53 E-value=0.12 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=24.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|+|.+|.|||||+..+......
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~ 27 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSG 27 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999998866
No 497
>PRK13976 thymidylate kinase; Provisional
Probab=92.50 E-value=0.47 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.|+|-|..|.||||+|+.+++....
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~ 26 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSD 26 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998865
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.44 E-value=0.11 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+++|+|..|.||||+++.++...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999865
No 499
>COG4639 Predicted kinase [General function prediction only]
Probab=92.44 E-value=0.26 Score=44.97 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVY 121 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~ 121 (824)
..+|..+|..|.||+|.|+.-+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~ 23 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF 23 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC
Confidence 4688999999999999998743
No 500
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=92.38 E-value=0.91 Score=45.75 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=30.2
Q ss_pred eEEEEEc-CCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHH
Q 048180 101 VVLGVCG-ASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQ 150 (824)
Q Consensus 101 ~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 150 (824)
+||+|.+ -||+||||+|..+......+ + + .++-|.....-+.....
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~--G-~-~VlliD~DpQ~s~~~w~ 48 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASD--G-K-RVALFEADENRPLTRWK 48 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhC--C-C-cEEEEeCCCCCCHHHHH
Confidence 4777776 89999999999998887542 2 2 34445554444444433
Done!