Query 048180
Match_columns 824
No_of_seqs 444 out of 4203
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.6E-48 1.9E-52 442.5 23.4 302 97-426 149-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-39 4.5E-44 375.2 22.1 288 75-420 131-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1E-37 3.4E-42 396.2 26.7 315 73-426 125-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.3E-34 2.2E-38 331.3 24.7 310 73-423 125-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-26 1.2E-30 267.4 26.5 368 429-821 16-483 (606)
6 4fmz_A Internalin; leucine ric 99.9 3.8E-25 1.3E-29 239.6 26.0 301 445-821 43-343 (347)
7 3v47_A TOLL-like receptor 5B a 99.9 3E-25 1E-29 249.8 24.9 373 429-821 15-405 (455)
8 2z63_A TOLL-like receptor 4, v 99.9 2.5E-25 8.4E-30 258.2 24.6 374 430-821 13-480 (570)
9 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.6E-30 266.8 21.6 343 435-821 436-837 (876)
10 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.5E-30 266.9 20.3 311 484-821 440-816 (876)
11 3t6q_A CD180 antigen; protein- 99.9 4.4E-25 1.5E-29 258.0 24.4 377 430-821 18-486 (606)
12 3o6n_A APL1; leucine-rich repe 99.9 4.1E-25 1.4E-29 243.3 21.4 305 465-821 42-349 (390)
13 4eco_A Uncharacterized protein 99.9 1.6E-25 5.3E-30 261.9 18.8 321 484-821 198-597 (636)
14 1o6v_A Internalin A; bacterial 99.9 2.1E-24 7E-29 243.4 25.4 319 445-821 67-385 (466)
15 1o6v_A Internalin A; bacterial 99.9 4.2E-24 1.4E-28 240.9 26.9 143 446-597 90-232 (466)
16 4eco_A Uncharacterized protein 99.9 6.2E-25 2.1E-29 256.8 19.9 359 436-821 195-629 (636)
17 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-24 1.1E-28 245.9 25.1 382 429-821 5-478 (520)
18 3oja_B Anopheles plasmodium-re 99.9 1.1E-24 3.8E-29 253.2 21.5 304 465-821 48-355 (597)
19 3rgz_A Protein brassinosteroid 99.9 1.3E-24 4.6E-29 260.0 22.8 349 446-821 178-548 (768)
20 4fmz_A Internalin; leucine ric 99.9 1.4E-23 4.8E-28 227.1 25.5 292 433-798 53-344 (347)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-23 4.8E-28 245.2 27.0 353 448-821 13-434 (606)
22 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-23 4E-28 242.8 26.1 191 432-635 13-210 (549)
23 3rgz_A Protein brassinosteroid 99.9 2.7E-24 9.2E-29 257.4 20.9 342 446-821 294-714 (768)
24 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-23 3.9E-28 243.0 23.3 170 431-601 33-211 (549)
25 2id5_A Lingo-1, leucine rich r 99.9 5.6E-23 1.9E-27 232.6 28.4 173 449-635 14-190 (477)
26 2z63_A TOLL-like receptor 4, v 99.9 1.7E-23 5.8E-28 242.7 24.4 362 430-821 34-528 (570)
27 3t6q_A CD180 antigen; protein- 99.9 7.5E-23 2.6E-27 239.1 28.4 354 445-821 128-557 (606)
28 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-23 2.8E-27 234.0 27.7 360 449-821 3-454 (520)
29 1ziw_A TOLL-like receptor 3; i 99.9 4.9E-23 1.7E-27 244.0 26.3 171 429-602 9-187 (680)
30 3j0a_A TOLL-like receptor 5; m 99.9 2.9E-23 9.8E-28 251.1 23.6 193 429-634 9-217 (844)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.1E-23 1.7E-27 237.9 24.6 370 429-821 36-507 (562)
32 2id5_A Lingo-1, leucine rich r 99.9 1.5E-22 5.1E-27 229.2 25.3 308 429-774 16-331 (477)
33 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.8E-27 223.8 20.4 299 445-798 44-350 (390)
34 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-22 2.2E-26 234.3 27.8 153 432-585 33-194 (680)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-21 5E-26 225.6 30.0 356 447-821 32-483 (562)
36 3bz5_A Internalin-J, INLJ; leu 99.9 5.4E-22 1.8E-26 221.9 23.1 304 445-804 41-355 (457)
37 3oja_B Anopheles plasmodium-re 99.9 1.9E-22 6.5E-27 234.4 20.1 299 445-798 50-356 (597)
38 3v47_A TOLL-like receptor 5B a 99.9 2.4E-21 8.2E-26 217.9 22.4 337 449-821 13-381 (455)
39 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-20 3.7E-25 211.3 25.0 300 435-778 53-353 (457)
40 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-21 6E-26 209.1 17.8 285 469-822 34-331 (332)
41 1jl5_A Outer protein YOPM; leu 99.9 2.1E-20 7.2E-25 208.8 27.0 191 431-657 78-268 (454)
42 3j0a_A TOLL-like receptor 5; m 99.9 7.4E-21 2.5E-25 230.0 24.9 330 449-804 7-378 (844)
43 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-20 6.5E-25 219.9 27.4 167 431-600 38-215 (635)
44 1xku_A Decorin; proteoglycan, 99.9 1.2E-20 4.1E-25 202.5 23.2 285 469-821 32-329 (330)
45 4fcg_A Uncharacterized protein 99.9 6.4E-21 2.2E-25 203.9 19.6 231 491-821 79-311 (328)
46 1jl5_A Outer protein YOPM; leu 99.8 5.6E-20 1.9E-24 205.3 23.6 300 429-803 96-411 (454)
47 2ft3_A Biglycan; proteoglycan, 99.8 6.7E-20 2.3E-24 196.8 21.7 290 447-799 34-332 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-20 1.3E-24 196.7 16.2 150 447-598 51-209 (313)
49 4fcg_A Uncharacterized protein 99.8 4E-20 1.4E-24 197.7 16.3 149 446-597 81-240 (328)
50 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-20 7.2E-25 198.6 12.8 153 468-634 50-210 (313)
51 1xku_A Decorin; proteoglycan, 99.8 3.9E-19 1.3E-23 190.6 22.7 289 447-797 32-329 (330)
52 3g06_A SSPH2 (leucine-rich rep 99.8 3.2E-19 1.1E-23 205.4 21.8 268 447-811 41-308 (622)
53 3g06_A SSPH2 (leucine-rich rep 99.8 2.4E-19 8.1E-24 206.4 20.6 261 427-782 43-303 (622)
54 4g8a_A TOLL-like receptor 4; l 99.8 7.3E-19 2.5E-23 206.4 25.1 381 428-820 56-576 (635)
55 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 7.8E-24 194.4 16.1 266 451-800 36-314 (353)
56 2z80_A TOLL-like receptor 2, v 99.8 7.5E-19 2.6E-23 190.3 18.5 265 429-774 36-312 (353)
57 3o53_A Protein LRIM1, AGAP0063 99.8 3.6E-20 1.2E-24 197.4 6.4 152 464-634 30-182 (317)
58 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-18 5.7E-23 181.5 16.1 173 449-634 14-190 (285)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-19 5.4E-24 192.4 7.0 267 470-805 12-280 (317)
60 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-19 4.7E-24 203.9 6.5 333 446-801 28-411 (461)
61 3zyj_A Leucine-rich repeat-con 99.8 7.1E-18 2.4E-22 188.4 19.0 147 450-599 47-198 (440)
62 3zyi_A Leucine-rich repeat-con 99.8 1.3E-17 4.6E-22 186.8 20.8 169 450-634 58-231 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 1.1E-17 3.9E-22 186.7 19.6 185 432-632 51-242 (440)
64 1ozn_A Reticulon 4 receptor; N 99.8 5.3E-18 1.8E-22 177.7 15.9 194 431-637 18-217 (285)
65 2z66_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 179.2 15.0 145 450-597 11-161 (306)
66 2z66_A Variable lymphocyte rec 99.7 1.7E-17 6E-22 175.7 17.5 193 430-636 13-214 (306)
67 3zyi_A Leucine-rich repeat-con 99.7 3E-17 1E-21 184.0 19.7 192 429-636 59-257 (452)
68 3oja_A Leucine-rich immune mol 99.7 1.9E-18 6.6E-23 194.9 9.3 150 466-634 32-182 (487)
69 1wwl_A Monocyte differentiatio 99.7 9.1E-19 3.1E-23 186.0 6.2 156 466-635 41-215 (312)
70 1z7x_W Ribonuclease inhibitor; 99.7 6.1E-19 2.1E-23 198.6 3.5 351 446-821 3-408 (461)
71 3ogk_B Coronatine-insensitive 99.7 5E-17 1.7E-21 189.1 17.3 342 445-819 163-546 (592)
72 2o6q_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 164.5 19.4 189 431-633 23-217 (270)
73 1h6u_A Internalin H; cell adhe 99.7 8.3E-17 2.8E-21 170.3 16.2 124 467-598 40-163 (308)
74 3oja_A Leucine-rich immune mol 99.7 3.2E-17 1.1E-21 184.8 13.2 234 493-819 34-270 (487)
75 3ogk_B Coronatine-insensitive 99.7 1.6E-17 5.3E-22 193.4 10.0 347 447-822 139-524 (592)
76 1p9a_G Platelet glycoprotein I 99.7 7.3E-16 2.5E-20 161.4 18.4 178 446-638 10-189 (290)
77 2z62_A TOLL-like receptor 4, v 99.7 1E-15 3.6E-20 159.3 19.1 173 452-634 13-190 (276)
78 2z62_A TOLL-like receptor 4, v 99.7 4.8E-16 1.6E-20 161.9 16.3 189 433-636 16-215 (276)
79 2o6q_A Variable lymphocyte rec 99.7 1.3E-15 4.6E-20 157.9 19.4 177 446-636 16-196 (270)
80 2xwt_C Thyrotropin receptor; s 99.7 2.3E-16 7.8E-21 160.6 13.2 185 436-635 23-219 (239)
81 1h6u_A Internalin H; cell adhe 99.7 9E-16 3.1E-20 162.3 18.2 190 445-658 40-229 (308)
82 2xwt_C Thyrotropin receptor; s 99.7 2.5E-16 8.5E-21 160.2 13.3 127 469-597 32-167 (239)
83 2p1m_B Transport inhibitor res 99.7 1.9E-17 6.7E-22 192.7 4.9 346 446-821 105-516 (594)
84 1wwl_A Monocyte differentiatio 99.6 6.3E-17 2.2E-21 171.8 6.2 241 447-742 44-307 (312)
85 2ast_B S-phase kinase-associat 99.6 2E-16 7E-21 169.9 10.0 247 469-805 48-310 (336)
86 3rfs_A Internalin B, repeat mo 99.6 2.5E-15 8.4E-20 156.0 17.8 175 445-634 40-218 (272)
87 2ast_B S-phase kinase-associat 99.6 2.8E-16 9.4E-21 168.9 10.0 248 447-779 48-308 (336)
88 1p9a_G Platelet glycoprotein I 99.6 2E-15 7E-20 158.0 16.3 187 431-634 17-208 (290)
89 1h6t_A Internalin B; cell adhe 99.6 3.3E-15 1.1E-19 156.5 16.8 171 445-636 45-215 (291)
90 3m19_A Variable lymphocyte rec 99.6 5.7E-15 2E-19 151.3 17.5 175 447-635 15-193 (251)
91 2p1m_B Transport inhibitor res 99.6 3.2E-16 1.1E-20 182.4 8.9 320 446-799 156-518 (594)
92 3m19_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 149.6 17.6 169 429-600 19-193 (251)
93 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 160.9 14.5 233 472-772 13-255 (350)
94 3rfs_A Internalin B, repeat mo 99.6 2.5E-14 8.6E-19 148.4 17.4 164 433-598 50-217 (272)
95 1m9s_A Internalin B; cell inva 99.6 1.3E-14 4.3E-19 166.9 14.9 171 445-636 42-212 (605)
96 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.8E-19 156.2 14.3 157 435-594 20-185 (350)
97 4glp_A Monocyte differentiatio 99.5 3.1E-15 1.1E-19 158.5 6.5 226 467-742 63-305 (310)
98 1h6t_A Internalin B; cell adhe 99.5 3.5E-14 1.2E-18 148.7 14.3 177 456-656 34-210 (291)
99 2ca6_A RAN GTPase-activating p 99.5 7.1E-15 2.4E-19 161.0 8.2 138 490-634 29-200 (386)
100 4ezg_A Putative uncharacterize 99.5 6.4E-14 2.2E-18 137.7 13.6 146 446-597 44-192 (197)
101 2ca6_A RAN GTPase-activating p 99.5 4.1E-15 1.4E-19 162.9 5.4 258 494-804 10-319 (386)
102 3e6j_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 138.4 16.0 150 448-600 21-173 (229)
103 1xeu_A Internalin C; cellular 99.5 3.5E-14 1.2E-18 146.3 11.1 167 448-636 21-187 (263)
104 1m9s_A Internalin B; cell inva 99.5 6.2E-14 2.1E-18 161.1 13.2 182 453-658 28-209 (605)
105 1w5s_A Origin recognition comp 99.5 3E-13 1E-17 149.5 18.3 287 100-415 50-387 (412)
106 2v70_A SLIT-2, SLIT homolog 2 99.5 1.9E-13 6.6E-18 136.6 14.3 149 449-599 14-166 (220)
107 2v9t_B SLIT homolog 2 protein 99.5 2.6E-13 8.9E-18 135.7 14.7 148 449-599 14-165 (220)
108 3goz_A Leucine-rich repeat-con 99.5 4.5E-14 1.6E-18 153.0 9.2 130 469-599 23-180 (362)
109 4glp_A Monocyte differentiatio 99.5 9.7E-14 3.3E-18 147.0 11.5 153 448-600 93-265 (310)
110 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.7E-18 136.0 11.0 151 465-634 41-194 (197)
111 2xot_A Amphoterin-induced prot 99.5 1.7E-13 5.7E-18 148.4 12.7 172 449-634 21-202 (361)
112 1xeu_A Internalin C; cellular 99.5 3.7E-13 1.3E-17 138.6 14.5 149 444-601 39-187 (263)
113 2qen_A Walker-type ATPase; unk 99.5 3.1E-12 1E-16 137.9 22.2 292 74-420 14-349 (350)
114 3goz_A Leucine-rich repeat-con 99.5 1.6E-13 5.5E-18 148.7 11.6 142 487-635 16-181 (362)
115 2xot_A Amphoterin-induced prot 99.4 4.8E-13 1.7E-17 144.8 14.1 170 428-599 22-202 (361)
116 2o6s_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 129.0 16.1 146 449-597 10-159 (208)
117 2v9t_B SLIT homolog 2 protein 99.4 6.7E-13 2.3E-17 132.7 13.4 149 471-634 14-165 (220)
118 2o6s_A Variable lymphocyte rec 99.4 5.8E-13 2E-17 132.0 12.3 158 432-599 15-178 (208)
119 2fna_A Conserved hypothetical 99.4 1.1E-11 3.7E-16 134.0 23.0 287 74-419 15-356 (357)
120 2ell_A Acidic leucine-rich nuc 99.4 7.3E-13 2.5E-17 126.4 11.5 134 493-635 24-161 (168)
121 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 127.2 10.6 134 467-602 23-163 (168)
122 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.4E-17 147.1 16.6 170 432-634 67-243 (571)
123 3cvr_A Invasion plasmid antige 99.4 2.2E-12 7.5E-17 146.6 16.7 183 446-658 59-242 (571)
124 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5.1E-17 130.1 13.4 149 470-634 13-166 (220)
125 3e6j_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 129.7 13.8 149 469-634 20-172 (229)
126 2je0_A Acidic leucine-rich nuc 99.3 1.1E-12 3.9E-17 122.3 8.1 123 469-593 18-147 (149)
127 2je0_A Acidic leucine-rich nuc 99.3 3.7E-12 1.3E-16 118.8 8.1 130 491-629 15-148 (149)
128 4b8c_D Glucose-repressible alc 99.3 6.2E-12 2.1E-16 148.3 11.2 152 446-601 173-331 (727)
129 1a9n_A U2A', U2A'; complex (nu 99.3 3.8E-12 1.3E-16 122.4 7.7 128 465-596 16-150 (176)
130 1a9n_A U2A', U2A'; complex (nu 99.3 7.1E-12 2.4E-16 120.5 9.6 137 489-635 15-154 (176)
131 2wfh_A SLIT homolog 2 protein 99.3 1.8E-11 6.2E-16 119.4 12.5 124 471-599 13-139 (193)
132 1w8a_A SLIT protein; signaling 99.3 1.6E-11 5.4E-16 119.8 11.8 125 471-599 11-139 (192)
133 1w8a_A SLIT protein; signaling 99.2 4.1E-11 1.4E-15 116.8 11.2 125 496-634 11-139 (192)
134 2wfh_A SLIT homolog 2 protein 99.2 6.5E-11 2.2E-15 115.4 12.0 126 495-634 12-139 (193)
135 1dce_A Protein (RAB geranylger 99.2 6E-11 2E-15 135.5 12.0 193 446-651 349-565 (567)
136 2o6r_A Variable lymphocyte rec 99.2 2E-10 6.8E-15 110.4 13.0 124 471-599 10-137 (177)
137 1dce_A Protein (RAB geranylger 99.2 8.8E-11 3E-15 134.1 11.6 123 494-627 442-566 (567)
138 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.5E-17 127.7 -3.4 153 470-627 25-180 (198)
139 4b8c_D Glucose-repressible alc 99.1 6.1E-11 2.1E-15 139.8 9.3 116 464-582 220-336 (727)
140 2o6r_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 107.6 13.4 127 448-577 9-139 (177)
141 2v1u_A Cell division control p 99.1 3.3E-09 1.1E-13 115.8 21.0 292 73-401 20-350 (387)
142 2qby_B CDC6 homolog 3, cell di 99.1 6.9E-09 2.4E-13 113.1 23.2 268 98-401 43-338 (384)
143 2qby_A CDC6 homolog 1, cell di 99.1 2.8E-09 9.5E-14 116.3 19.0 296 72-401 20-347 (386)
144 3sb4_A Hypothetical leucine ri 99.1 2.1E-10 7E-15 122.4 9.7 287 467-818 24-328 (329)
145 1ds9_A Outer arm dynein; leuci 99.1 3.3E-12 1.1E-16 125.4 -4.1 142 447-592 24-180 (198)
146 2r9u_A Variable lymphocyte rec 99.0 8E-10 2.7E-14 105.6 11.3 103 495-600 14-119 (174)
147 1fnn_A CDC6P, cell division co 99.0 4.6E-08 1.6E-12 106.7 26.2 271 100-401 44-350 (389)
148 3g39_A Variable lymphocyte rec 99.0 9.8E-10 3.3E-14 104.6 11.0 103 495-600 11-116 (170)
149 1njg_A DNA polymerase III subu 98.9 1.8E-08 6.3E-13 101.9 16.2 177 100-288 45-232 (250)
150 2r9u_A Variable lymphocyte rec 98.9 6.8E-09 2.3E-13 99.1 10.5 103 471-578 15-121 (174)
151 3sb4_A Hypothetical leucine ri 98.9 8.2E-09 2.8E-13 109.9 11.7 57 467-525 100-157 (329)
152 3g39_A Variable lymphocyte rec 98.8 1.2E-08 4.1E-13 97.1 10.5 103 470-577 11-117 (170)
153 4fdw_A Leucine rich hypothetic 98.8 1.6E-07 5.5E-12 102.3 19.6 123 466-596 111-236 (401)
154 2chg_A Replication factor C sm 98.8 1E-07 3.4E-12 94.9 15.8 163 101-288 39-208 (226)
155 4fdw_A Leucine rich hypothetic 98.7 5E-07 1.7E-11 98.3 18.8 257 446-772 113-379 (401)
156 2ifg_A High affinity nerve gro 98.7 3.8E-08 1.3E-12 105.6 9.5 98 499-598 14-115 (347)
157 1hqc_A RUVB; extended AAA-ATPa 98.7 2.6E-07 8.9E-12 97.9 15.4 251 100-401 38-324 (324)
158 3un9_A NLR family member X1; l 98.6 9.1E-09 3.1E-13 111.0 2.4 89 539-634 155-252 (372)
159 4fs7_A Uncharacterized protein 98.5 1.7E-06 6E-11 94.3 18.4 101 700-816 292-393 (394)
160 3un9_A NLR family member X1; l 98.5 1.7E-08 5.9E-13 108.8 1.7 154 446-600 72-253 (372)
161 2ifg_A High affinity nerve gro 98.5 2.7E-07 9.3E-12 98.9 10.1 91 481-574 21-115 (347)
162 1sxj_B Activator 1 37 kDa subu 98.5 8.7E-07 3E-11 93.8 13.4 161 101-285 43-211 (323)
163 4fs7_A Uncharacterized protein 98.4 6.3E-06 2.2E-10 89.8 17.5 304 464-822 67-377 (394)
164 3te6_A Regulatory protein SIR3 98.3 1.1E-05 3.8E-10 83.6 16.7 150 98-252 43-212 (318)
165 1iqp_A RFCS; clamp loader, ext 98.3 4.9E-06 1.7E-10 88.1 12.7 163 100-288 46-216 (327)
166 2ra8_A Uncharacterized protein 98.2 1.5E-06 5.2E-11 92.8 7.4 110 682-797 192-317 (362)
167 2ra8_A Uncharacterized protein 98.2 1.6E-06 5.6E-11 92.5 7.4 139 487-634 166-320 (362)
168 2z4s_A Chromosomal replication 98.2 7.3E-06 2.5E-10 90.1 11.8 160 100-283 130-305 (440)
169 4gt6_A Cell surface protein; l 98.1 7.9E-05 2.7E-09 81.0 18.9 317 464-819 59-386 (394)
170 2chq_A Replication factor C sm 98.1 3.5E-05 1.2E-09 81.1 14.0 180 74-287 19-207 (319)
171 3bos_A Putative DNA replicatio 98.0 6.4E-06 2.2E-10 82.8 7.8 151 99-285 51-218 (242)
172 1d2n_A N-ethylmaleimide-sensit 98.0 0.00016 5.5E-09 74.1 16.7 174 98-307 62-263 (272)
173 1jr3_A DNA polymerase III subu 97.9 4.1E-05 1.4E-09 82.6 12.1 173 100-285 38-222 (373)
174 2qz4_A Paraplegin; AAA+, SPG7, 97.9 0.00023 7.9E-09 72.4 16.3 157 99-283 38-221 (262)
175 1sxj_A Activator 1 95 kDa subu 97.9 5.9E-05 2E-09 84.9 12.6 170 99-285 76-254 (516)
176 3e4g_A ATP synthase subunit S, 97.9 6.9E-06 2.4E-10 76.9 4.1 36 684-720 62-100 (176)
177 3h4m_A Proteasome-activating n 97.9 0.00011 3.8E-09 75.9 13.6 155 99-283 50-230 (285)
178 3e4g_A ATP synthase subunit S, 97.9 8.6E-06 3E-10 76.2 4.5 93 705-803 61-155 (176)
179 1jbk_A CLPB protein; beta barr 97.8 2.6E-05 9E-10 75.0 7.8 27 100-126 43-69 (195)
180 1l8q_A Chromosomal replication 97.8 0.00014 4.9E-09 76.6 12.5 152 100-280 37-204 (324)
181 4gt6_A Cell surface protein; l 97.6 0.00093 3.2E-08 72.5 16.9 309 447-794 65-385 (394)
182 3pvs_A Replication-associated 97.6 0.00028 9.6E-09 77.4 11.4 157 99-286 49-217 (447)
183 1a5t_A Delta prime, HOLB; zinc 97.6 0.00096 3.3E-08 70.4 15.2 167 100-283 24-204 (334)
184 3u61_B DNA polymerase accessor 97.6 0.00049 1.7E-08 72.5 12.8 172 100-301 48-233 (324)
185 3uk6_A RUVB-like 2; hexameric 97.5 0.00064 2.2E-08 73.0 13.8 49 232-283 253-302 (368)
186 3ec2_A DNA replication protein 97.5 7.8E-05 2.7E-09 71.1 5.4 98 100-220 38-142 (180)
187 1io0_A Tropomodulin; LRR prote 97.5 3.9E-05 1.3E-09 73.5 3.1 38 489-526 32-75 (185)
188 2w58_A DNAI, primosome compone 97.5 0.00017 5.8E-09 70.2 7.6 96 101-220 55-158 (202)
189 3syl_A Protein CBBX; photosynt 97.5 0.00069 2.4E-08 70.7 12.7 132 98-253 65-219 (309)
190 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.0022 7.5E-08 67.2 16.3 156 99-284 44-223 (322)
191 3eie_A Vacuolar protein sortin 97.4 0.0022 7.5E-08 67.3 15.9 155 100-283 51-227 (322)
192 3b9p_A CG5977-PA, isoform A; A 97.4 0.0026 9E-08 65.8 16.3 154 99-283 53-232 (297)
193 4h09_A Hypothetical leucine ri 97.4 0.0054 1.9E-07 65.9 19.0 124 464-596 42-168 (379)
194 3pfi_A Holliday junction ATP-d 97.4 0.0057 1.9E-07 64.6 18.7 150 99-285 54-228 (338)
195 2kjq_A DNAA-related protein; s 97.4 0.00017 5.7E-09 66.2 5.6 27 100-126 36-62 (149)
196 1sxj_E Activator 1 40 kDa subu 97.4 0.00032 1.1E-08 74.9 8.7 102 184-287 133-240 (354)
197 1io0_A Tropomodulin; LRR prote 97.4 9.4E-05 3.2E-09 70.9 4.0 120 509-635 29-165 (185)
198 2qp9_X Vacuolar protein sortin 97.3 0.0018 6.2E-08 68.9 13.8 154 100-284 84-261 (355)
199 1sxj_D Activator 1 41 kDa subu 97.3 0.00048 1.7E-08 73.4 9.4 170 102-285 60-236 (353)
200 3cf0_A Transitional endoplasmi 97.3 0.0023 7.9E-08 66.4 13.9 151 98-278 47-222 (301)
201 3d8b_A Fidgetin-like protein 1 97.3 0.0026 8.8E-08 67.8 14.3 158 99-285 116-296 (357)
202 3rw6_A Nuclear RNA export fact 97.2 0.00019 6.6E-09 72.4 4.7 62 490-552 167-233 (267)
203 1in4_A RUVB, holliday junction 97.2 0.0033 1.1E-07 66.2 13.7 50 232-284 174-223 (334)
204 3rw6_A Nuclear RNA export fact 97.1 0.00053 1.8E-08 69.2 6.6 77 467-545 169-257 (267)
205 4b4t_J 26S protease regulatory 97.1 0.0092 3.2E-07 63.4 16.1 150 98-277 180-354 (405)
206 2zan_A Vacuolar protein sortin 97.1 0.0094 3.2E-07 65.4 16.8 157 99-283 166-344 (444)
207 4b4t_L 26S protease subunit RP 97.0 0.021 7.3E-07 61.6 17.8 150 98-277 213-387 (437)
208 2p65_A Hypothetical protein PF 97.0 0.0011 3.9E-08 63.0 7.1 27 100-126 43-69 (187)
209 3vfd_A Spastin; ATPase, microt 96.9 0.0084 2.9E-07 64.6 14.3 155 100-283 148-325 (389)
210 2gno_A DNA polymerase III, gam 96.9 0.0042 1.4E-07 64.3 11.2 128 100-251 18-152 (305)
211 1sxj_C Activator 1 40 kDa subu 96.9 0.0062 2.1E-07 64.4 12.7 150 100-280 46-208 (340)
212 4b4t_H 26S protease regulatory 96.9 0.016 5.6E-07 62.4 15.7 150 98-277 241-415 (467)
213 4b4t_I 26S protease regulatory 96.8 0.012 4.2E-07 62.7 13.5 149 98-276 214-387 (437)
214 1lv7_A FTSH; alpha/beta domain 96.7 0.015 5E-07 58.6 13.4 24 101-124 46-69 (257)
215 4b4t_M 26S protease regulatory 96.7 0.02 6.9E-07 61.7 14.5 149 98-276 213-386 (434)
216 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0017 5.8E-08 66.6 5.1 23 101-123 124-146 (331)
217 2ce7_A Cell division protein F 96.6 0.013 4.5E-07 64.3 12.6 147 101-277 50-221 (476)
218 3hu3_A Transitional endoplasmi 96.6 0.0089 3.1E-07 66.1 11.3 153 99-281 237-412 (489)
219 4b4t_K 26S protease regulatory 96.4 0.065 2.2E-06 57.7 16.5 73 98-196 204-276 (428)
220 2cvh_A DNA repair and recombin 96.4 0.016 5.5E-07 56.6 10.7 44 100-150 20-63 (220)
221 3pxg_A Negative regulator of g 96.3 0.039 1.3E-06 60.9 14.3 146 75-252 183-339 (468)
222 3lw7_A Adenylate kinase relate 96.2 0.0097 3.3E-07 55.8 7.9 20 101-120 2-21 (179)
223 1vma_A Cell division protein F 96.2 0.018 6.1E-07 59.4 10.4 92 98-194 102-195 (306)
224 2r62_A Cell division protease 96.2 0.0034 1.2E-07 63.9 4.9 24 102-125 46-69 (268)
225 3hr8_A Protein RECA; alpha and 96.2 0.016 5.4E-07 61.0 10.0 89 100-197 61-151 (356)
226 1qvr_A CLPB protein; coiled co 96.2 0.012 4.3E-07 70.2 10.1 134 101-251 192-345 (854)
227 1ofh_A ATP-dependent HSL prote 96.1 0.012 4.1E-07 61.0 8.8 25 100-124 50-74 (310)
228 1r6b_X CLPA protein; AAA+, N-t 96.1 0.037 1.3E-06 65.3 13.8 133 101-251 208-362 (758)
229 3ice_A Transcription terminati 96.1 0.0079 2.7E-07 62.9 6.9 90 101-197 175-273 (422)
230 3t15_A Ribulose bisphosphate c 96.0 0.0047 1.6E-07 63.7 4.9 28 98-125 34-61 (293)
231 2x8a_A Nuclear valosin-contain 96.0 0.057 1.9E-06 54.8 12.8 124 103-252 47-192 (274)
232 1ixz_A ATP-dependent metallopr 96.0 0.03 1E-06 56.2 10.5 22 103-124 52-73 (254)
233 3pxi_A Negative regulator of g 95.9 0.047 1.6E-06 64.4 13.7 148 74-252 182-339 (758)
234 1u94_A RECA protein, recombina 95.9 0.023 7.7E-07 60.0 9.4 88 100-196 63-152 (356)
235 3fwy_A Light-independent proto 95.9 0.0078 2.7E-07 62.4 5.7 29 98-126 46-74 (314)
236 3dm5_A SRP54, signal recogniti 95.9 0.027 9.2E-07 60.8 10.0 28 99-126 99-126 (443)
237 3m6a_A ATP-dependent protease 95.9 0.021 7.3E-07 64.2 9.7 27 99-125 107-133 (543)
238 1n0w_A DNA repair protein RAD5 95.8 0.036 1.2E-06 55.0 10.3 95 100-197 24-131 (243)
239 1xp8_A RECA protein, recombina 95.8 0.031 1.1E-06 59.1 10.0 88 100-196 74-163 (366)
240 4h09_A Hypothetical leucine ri 95.8 0.031 1E-06 59.9 10.3 124 464-593 213-340 (379)
241 2zr9_A Protein RECA, recombina 95.8 0.031 1.1E-06 58.9 9.9 88 100-196 61-150 (349)
242 1zu4_A FTSY; GTPase, signal re 95.7 0.072 2.5E-06 55.3 12.3 30 97-126 102-131 (320)
243 3e70_C DPA, signal recognition 95.7 0.052 1.8E-06 56.5 11.1 57 98-158 127-184 (328)
244 3kl4_A SRP54, signal recogniti 95.7 0.028 9.5E-07 60.7 9.2 28 99-126 96-123 (433)
245 1iy2_A ATP-dependent metallopr 95.6 0.047 1.6E-06 55.6 10.6 22 103-124 76-97 (278)
246 3io5_A Recombination and repai 95.6 0.042 1.4E-06 56.1 9.6 89 102-197 30-123 (333)
247 2yhs_A FTSY, cell division pro 95.6 0.089 3.1E-06 57.3 12.7 30 97-126 290-319 (503)
248 2z43_A DNA repair and recombin 95.6 0.036 1.2E-06 57.9 9.4 56 100-158 107-166 (324)
249 2qgz_A Helicase loader, putati 95.5 0.016 5.4E-07 60.1 6.4 26 100-125 152-177 (308)
250 1ls1_A Signal recognition part 95.5 0.049 1.7E-06 55.9 10.0 28 99-126 97-124 (295)
251 3cf2_A TER ATPase, transitiona 95.5 0.06 2E-06 62.7 11.7 150 98-277 236-407 (806)
252 2xxa_A Signal recognition part 95.5 0.063 2.2E-06 58.2 11.2 29 98-126 98-126 (433)
253 1v5w_A DMC1, meiotic recombina 95.4 0.058 2E-06 56.8 10.4 57 99-158 121-181 (343)
254 2i1q_A DNA repair and recombin 95.4 0.039 1.3E-06 57.7 9.0 58 100-158 98-167 (322)
255 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.12 3.9E-06 50.8 11.9 46 101-152 24-69 (235)
256 2px0_A Flagellar biosynthesis 95.2 0.074 2.5E-06 54.5 10.2 28 99-126 104-131 (296)
257 1sky_E F1-ATPase, F1-ATP synth 95.2 0.075 2.6E-06 57.5 10.5 91 102-196 153-256 (473)
258 3c8u_A Fructokinase; YP_612366 95.1 0.025 8.7E-07 54.8 5.9 28 98-125 20-47 (208)
259 4a74_A DNA repair and recombin 95.1 0.075 2.6E-06 52.2 9.5 47 100-146 25-73 (231)
260 1j8m_F SRP54, signal recogniti 95.0 0.076 2.6E-06 54.5 9.6 27 100-126 98-124 (297)
261 3kb2_A SPBC2 prophage-derived 95.0 0.013 4.6E-07 54.7 3.6 24 101-124 2-25 (173)
262 2dhr_A FTSH; AAA+ protein, hex 95.0 0.073 2.5E-06 58.7 9.8 22 103-124 67-88 (499)
263 2ck3_D ATP synthase subunit be 95.0 0.072 2.5E-06 57.5 9.5 91 101-195 154-263 (482)
264 1rj9_A FTSY, signal recognitio 95.0 0.061 2.1E-06 55.4 8.7 28 99-126 101-128 (304)
265 3vaa_A Shikimate kinase, SK; s 94.9 0.015 5.3E-07 55.9 3.8 26 99-124 24-49 (199)
266 3lda_A DNA repair protein RAD5 94.9 0.1 3.5E-06 55.9 10.5 58 100-158 178-237 (400)
267 1odf_A YGR205W, hypothetical 3 94.9 0.033 1.1E-06 57.0 6.4 30 97-126 28-57 (290)
268 1fx0_B ATP synthase beta chain 94.9 0.089 3E-06 57.0 9.9 53 101-156 166-219 (498)
269 1qhx_A CPT, protein (chloramph 94.8 0.015 5.2E-07 54.7 3.5 24 101-124 4-27 (178)
270 3l0o_A Transcription terminati 94.7 0.013 4.5E-07 61.2 2.8 92 101-196 176-273 (427)
271 4fcw_A Chaperone protein CLPB; 94.7 0.17 6E-06 52.2 11.6 26 100-125 47-72 (311)
272 3trf_A Shikimate kinase, SK; a 94.6 0.019 6.6E-07 54.4 3.7 25 100-124 5-29 (185)
273 3pxi_A Negative regulator of g 94.6 0.054 1.9E-06 63.9 8.3 25 100-124 521-545 (758)
274 1g5t_A COB(I)alamin adenosyltr 94.6 0.062 2.1E-06 50.8 7.0 117 101-221 29-163 (196)
275 1zp6_A Hypothetical protein AT 94.6 0.017 5.9E-07 55.0 3.4 24 100-123 9-32 (191)
276 1rz3_A Hypothetical protein rb 94.6 0.04 1.4E-06 53.1 5.9 29 98-126 20-48 (201)
277 3b9q_A Chloroplast SRP recepto 94.6 0.14 4.9E-06 52.5 10.4 29 98-126 98-126 (302)
278 1kgd_A CASK, peripheral plasma 94.5 0.019 6.4E-07 54.3 3.3 25 100-124 5-29 (180)
279 1kag_A SKI, shikimate kinase I 94.5 0.016 5.6E-07 54.2 2.9 24 101-124 5-28 (173)
280 1ly1_A Polynucleotide kinase; 94.5 0.021 7.1E-07 53.8 3.6 22 101-122 3-24 (181)
281 2j37_W Signal recognition part 94.5 0.14 4.6E-06 56.5 10.5 29 98-126 99-127 (504)
282 2og2_A Putative signal recogni 94.5 0.26 8.9E-06 51.7 12.2 29 98-126 155-183 (359)
283 3uie_A Adenylyl-sulfate kinase 94.5 0.026 8.9E-07 54.3 4.2 28 98-125 23-50 (200)
284 1nks_A Adenylate kinase; therm 94.4 0.025 8.5E-07 53.9 4.0 25 101-125 2-26 (194)
285 2b8t_A Thymidine kinase; deoxy 94.4 0.024 8.1E-07 55.4 3.7 112 100-221 12-126 (223)
286 1pzn_A RAD51, DNA repair and r 94.4 0.15 5.2E-06 53.6 10.3 58 99-157 130-189 (349)
287 1xjc_A MOBB protein homolog; s 94.4 0.028 9.7E-07 52.1 4.0 28 99-126 3-30 (169)
288 3t61_A Gluconokinase; PSI-biol 94.3 0.019 6.7E-07 55.3 3.0 25 100-124 18-42 (202)
289 2ffh_A Protein (FFH); SRP54, s 94.3 0.15 5.2E-06 54.8 10.2 28 99-126 97-124 (425)
290 2rhm_A Putative kinase; P-loop 94.3 0.03 1E-06 53.4 4.2 25 100-124 5-29 (193)
291 1knq_A Gluconate kinase; ALFA/ 94.3 0.028 9.6E-07 52.7 3.9 25 100-124 8-32 (175)
292 3bh0_A DNAB-like replicative h 94.3 0.15 5.1E-06 52.9 9.8 51 100-156 68-118 (315)
293 4eun_A Thermoresistant glucoki 94.2 0.026 8.8E-07 54.4 3.6 26 99-124 28-53 (200)
294 1kht_A Adenylate kinase; phosp 94.2 0.027 9.3E-07 53.6 3.8 25 101-125 4-28 (192)
295 3iij_A Coilin-interacting nucl 94.2 0.023 7.9E-07 53.6 3.1 25 100-124 11-35 (180)
296 2ze6_A Isopentenyl transferase 94.2 0.029 9.8E-07 56.3 3.9 24 101-124 2-25 (253)
297 1ukz_A Uridylate kinase; trans 94.1 0.033 1.1E-06 53.6 4.2 27 97-123 12-38 (203)
298 1zuh_A Shikimate kinase; alpha 94.1 0.03 1E-06 52.1 3.7 26 99-124 6-31 (168)
299 2jaq_A Deoxyguanosine kinase; 94.1 0.029 1E-06 54.0 3.7 23 102-124 2-24 (205)
300 1uf9_A TT1252 protein; P-loop, 94.1 0.031 1.1E-06 53.7 3.9 27 97-123 5-31 (203)
301 2bdt_A BH3686; alpha-beta prot 94.1 0.029 1E-06 53.4 3.6 22 101-122 3-24 (189)
302 1via_A Shikimate kinase; struc 94.1 0.025 8.5E-07 53.1 3.1 24 101-124 5-28 (175)
303 1jr3_D DNA polymerase III, del 94.1 0.65 2.2E-05 48.6 14.5 156 100-285 18-186 (343)
304 2c95_A Adenylate kinase 1; tra 94.0 0.034 1.2E-06 53.2 3.9 25 100-124 9-33 (196)
305 3tr0_A Guanylate kinase, GMP k 94.0 0.028 9.5E-07 54.3 3.3 23 101-123 8-30 (205)
306 1y63_A LMAJ004144AAA protein; 93.9 0.036 1.2E-06 52.5 4.0 25 99-123 9-33 (184)
307 1gvn_B Zeta; postsegregational 93.9 0.065 2.2E-06 54.8 6.1 26 98-123 31-56 (287)
308 1tev_A UMP-CMP kinase; ploop, 93.9 0.036 1.2E-06 52.9 4.0 24 101-124 4-27 (196)
309 3umf_A Adenylate kinase; rossm 93.9 0.038 1.3E-06 53.6 4.1 27 98-124 27-53 (217)
310 4a1f_A DNAB helicase, replicat 93.9 1 3.5E-05 46.7 15.2 51 101-157 47-97 (338)
311 1ypw_A Transitional endoplasmi 93.9 0.14 4.9E-06 60.3 9.8 128 99-252 237-386 (806)
312 2if2_A Dephospho-COA kinase; a 93.9 0.029 1E-06 54.1 3.3 22 101-122 2-23 (204)
313 2yvu_A Probable adenylyl-sulfa 93.9 0.039 1.3E-06 52.3 4.1 28 99-126 12-39 (186)
314 1ex7_A Guanylate kinase; subst 93.9 0.027 9.3E-07 53.2 2.9 24 101-124 2-25 (186)
315 3asz_A Uridine kinase; cytidin 93.9 0.034 1.2E-06 53.9 3.8 27 99-125 5-31 (211)
316 2iyv_A Shikimate kinase, SK; t 93.9 0.027 9.1E-07 53.3 2.9 24 101-124 3-26 (184)
317 3rfe_A Platelet glycoprotein I 93.9 0.087 3E-06 46.5 6.0 54 543-598 12-67 (130)
318 1ye8_A Protein THEP1, hypothet 93.9 0.035 1.2E-06 52.2 3.7 25 102-126 2-26 (178)
319 4gp7_A Metallophosphoesterase; 93.8 0.026 9E-07 52.7 2.7 23 99-121 8-30 (171)
320 1cke_A CK, MSSA, protein (cyti 93.8 0.035 1.2E-06 54.6 3.7 24 101-124 6-29 (227)
321 3tau_A Guanylate kinase, GMP k 93.8 0.036 1.2E-06 53.7 3.6 26 99-124 7-32 (208)
322 3a00_A Guanylate kinase, GMP k 93.8 0.027 9.3E-07 53.5 2.7 25 101-125 2-26 (186)
323 3cm0_A Adenylate kinase; ATP-b 93.8 0.04 1.4E-06 52.2 3.9 24 101-124 5-28 (186)
324 2bwj_A Adenylate kinase 5; pho 93.7 0.037 1.3E-06 53.0 3.6 24 101-124 13-36 (199)
325 2qor_A Guanylate kinase; phosp 93.7 0.029 1E-06 54.2 2.9 26 99-124 11-36 (204)
326 2bbw_A Adenylate kinase 4, AK4 93.7 0.039 1.3E-06 55.1 3.9 25 100-124 27-51 (246)
327 2j41_A Guanylate kinase; GMP, 93.7 0.034 1.2E-06 53.7 3.3 25 100-124 6-30 (207)
328 3vr4_D V-type sodium ATPase su 93.7 0.091 3.1E-06 56.4 6.8 90 102-195 153-258 (465)
329 2ga8_A Hypothetical 39.9 kDa p 93.7 0.071 2.4E-06 55.5 5.8 30 98-127 22-51 (359)
330 1e6c_A Shikimate kinase; phosp 93.6 0.033 1.1E-06 52.0 3.1 24 101-124 3-26 (173)
331 2qt1_A Nicotinamide riboside k 93.6 0.041 1.4E-06 53.2 3.7 26 98-123 19-44 (207)
332 1qf9_A UMP/CMP kinase, protein 93.6 0.052 1.8E-06 51.6 4.4 25 100-124 6-30 (194)
333 2v3c_C SRP54, signal recogniti 93.6 0.062 2.1E-06 58.2 5.5 29 98-126 97-125 (432)
334 2plr_A DTMP kinase, probable t 93.6 0.044 1.5E-06 53.1 3.9 26 101-126 5-30 (213)
335 3lv8_A DTMP kinase, thymidylat 93.5 0.31 1.1E-05 47.9 9.9 37 100-139 27-63 (236)
336 1uj2_A Uridine-cytidine kinase 93.5 0.045 1.5E-06 54.8 4.0 27 98-124 20-46 (252)
337 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.046 1.6E-06 55.1 3.9 26 100-125 4-29 (260)
338 2cdn_A Adenylate kinase; phosp 93.5 0.05 1.7E-06 52.3 4.1 26 99-124 19-44 (201)
339 1aky_A Adenylate kinase; ATP:A 93.4 0.047 1.6E-06 53.4 3.9 25 100-124 4-28 (220)
340 1jjv_A Dephospho-COA kinase; P 93.4 0.042 1.4E-06 53.1 3.4 22 101-122 3-24 (206)
341 2pt5_A Shikimate kinase, SK; a 93.4 0.048 1.6E-06 50.6 3.7 23 102-124 2-24 (168)
342 1lvg_A Guanylate kinase, GMP k 93.4 0.034 1.2E-06 53.4 2.7 24 101-124 5-28 (198)
343 2grj_A Dephospho-COA kinase; T 93.4 0.05 1.7E-06 51.9 3.8 26 98-123 10-35 (192)
344 2vli_A Antibiotic resistance p 93.3 0.037 1.3E-06 52.2 2.8 25 100-124 5-29 (183)
345 3ney_A 55 kDa erythrocyte memb 93.3 0.047 1.6E-06 52.1 3.5 26 99-124 18-43 (197)
346 2pbr_A DTMP kinase, thymidylat 93.3 0.048 1.7E-06 51.9 3.7 24 102-125 2-25 (195)
347 4edh_A DTMP kinase, thymidylat 93.3 0.3 1E-05 47.2 9.4 26 101-126 7-32 (213)
348 2z0h_A DTMP kinase, thymidylat 93.2 0.14 4.7E-06 48.8 6.8 25 102-126 2-26 (197)
349 3n70_A Transport activator; si 93.2 0.047 1.6E-06 49.4 3.2 23 102-124 26-48 (145)
350 3aez_A Pantothenate kinase; tr 93.1 0.053 1.8E-06 56.1 3.9 29 98-126 88-116 (312)
351 1nn5_A Similar to deoxythymidy 93.1 0.062 2.1E-06 52.2 4.2 27 100-126 9-35 (215)
352 2wwf_A Thymidilate kinase, put 93.1 0.056 1.9E-06 52.4 3.8 27 100-126 10-36 (212)
353 3jvv_A Twitching mobility prot 93.1 0.031 1.1E-06 58.9 2.1 111 101-224 124-234 (356)
354 1znw_A Guanylate kinase, GMP k 93.1 0.049 1.7E-06 52.7 3.3 25 100-124 20-44 (207)
355 1htw_A HI0065; nucleotide-bind 93.0 0.058 2E-06 49.5 3.6 26 99-124 32-57 (158)
356 3gqb_B V-type ATP synthase bet 93.0 0.13 4.6E-06 55.0 6.8 94 102-195 149-261 (464)
357 4e22_A Cytidylate kinase; P-lo 93.0 0.053 1.8E-06 54.3 3.6 25 100-124 27-51 (252)
358 1gtv_A TMK, thymidylate kinase 93.0 0.034 1.2E-06 54.1 2.0 26 101-126 1-26 (214)
359 2p5t_B PEZT; postsegregational 93.0 0.097 3.3E-06 52.4 5.5 27 98-124 30-56 (253)
360 2jeo_A Uridine-cytidine kinase 93.0 0.061 2.1E-06 53.6 3.9 27 98-124 23-49 (245)
361 4tmk_A Protein (thymidylate ki 92.9 0.52 1.8E-05 45.5 10.4 52 101-155 4-55 (213)
362 1z6g_A Guanylate kinase; struc 92.9 0.046 1.6E-06 53.4 2.8 25 100-124 23-47 (218)
363 2f1r_A Molybdopterin-guanine d 92.8 0.049 1.7E-06 50.8 2.8 26 101-126 3-28 (171)
364 1zd8_A GTP:AMP phosphotransfer 92.8 0.058 2E-06 53.0 3.5 25 100-124 7-31 (227)
365 1m7g_A Adenylylsulfate kinase; 92.8 0.073 2.5E-06 51.6 4.1 27 99-125 24-50 (211)
366 3qfl_A MLA10; coiled-coil, (CC 92.8 0.011 3.8E-07 51.0 -1.6 19 1-19 64-82 (115)
367 3tqc_A Pantothenate kinase; bi 92.8 0.069 2.4E-06 55.2 4.1 29 97-125 89-117 (321)
368 3fb4_A Adenylate kinase; psych 92.7 0.066 2.2E-06 52.1 3.7 23 102-124 2-24 (216)
369 1zak_A Adenylate kinase; ATP:A 92.7 0.059 2E-06 52.7 3.4 25 100-124 5-29 (222)
370 2i3b_A HCR-ntpase, human cance 92.7 0.059 2E-06 51.2 3.3 25 101-125 2-26 (189)
371 2f6r_A COA synthase, bifunctio 92.7 0.066 2.3E-06 54.6 3.8 24 98-121 73-96 (281)
372 3nwj_A ATSK2; P loop, shikimat 92.6 0.056 1.9E-06 53.8 3.1 24 101-124 49-72 (250)
373 2pez_A Bifunctional 3'-phospho 92.6 0.081 2.8E-06 49.7 4.1 26 100-125 5-30 (179)
374 2r9v_A ATP synthase subunit al 92.6 0.18 6.1E-06 54.8 7.1 87 101-195 176-277 (515)
375 3tlx_A Adenylate kinase 2; str 92.5 0.083 2.8E-06 52.5 4.2 27 98-124 27-53 (243)
376 2c61_A A-type ATP synthase non 92.5 0.17 5.9E-06 54.5 6.9 94 101-195 153-259 (469)
377 2hf9_A Probable hydrogenase ni 92.5 0.081 2.8E-06 51.8 4.0 27 98-124 36-62 (226)
378 1np6_A Molybdopterin-guanine d 92.4 0.085 2.9E-06 49.3 3.8 28 99-126 5-32 (174)
379 1vht_A Dephospho-COA kinase; s 92.4 0.081 2.8E-06 51.6 3.9 23 100-122 4-26 (218)
380 2v54_A DTMP kinase, thymidylat 92.4 0.069 2.4E-06 51.3 3.3 24 101-124 5-28 (204)
381 3d3q_A TRNA delta(2)-isopenten 92.4 0.076 2.6E-06 55.1 3.8 24 101-124 8-31 (340)
382 1s96_A Guanylate kinase, GMP k 92.4 0.069 2.4E-06 52.1 3.3 25 100-124 16-40 (219)
383 3hjn_A DTMP kinase, thymidylat 92.4 0.39 1.3E-05 45.8 8.6 50 102-155 2-51 (197)
384 3be4_A Adenylate kinase; malar 92.3 0.071 2.4E-06 52.0 3.4 24 101-124 6-29 (217)
385 1cr0_A DNA primase/helicase; R 92.3 0.23 7.7E-06 51.0 7.4 52 100-156 35-86 (296)
386 3dl0_A Adenylate kinase; phosp 92.3 0.076 2.6E-06 51.6 3.6 22 102-123 2-23 (216)
387 3ld9_A DTMP kinase, thymidylat 92.2 0.29 1E-05 47.6 7.5 29 98-126 19-47 (223)
388 3ake_A Cytidylate kinase; CMP 92.2 0.085 2.9E-06 50.8 3.7 23 102-124 4-26 (208)
389 3r20_A Cytidylate kinase; stru 92.2 0.087 3E-06 51.7 3.7 25 100-124 9-33 (233)
390 2qe7_A ATP synthase subunit al 92.2 0.33 1.1E-05 52.7 8.5 87 101-195 163-264 (502)
391 2onk_A Molybdate/tungstate ABC 92.1 0.078 2.7E-06 52.5 3.3 26 97-123 22-47 (240)
392 3v9p_A DTMP kinase, thymidylat 92.0 0.26 9E-06 48.1 7.0 27 100-126 25-51 (227)
393 2ehv_A Hypothetical protein PH 92.0 0.074 2.5E-06 53.0 3.2 24 100-123 30-53 (251)
394 1a7j_A Phosphoribulokinase; tr 92.0 0.065 2.2E-06 54.8 2.7 27 99-125 4-30 (290)
395 3sr0_A Adenylate kinase; phosp 91.9 0.099 3.4E-06 50.4 3.7 23 102-124 2-24 (206)
396 1sq5_A Pantothenate kinase; P- 91.9 0.098 3.4E-06 54.1 4.0 28 98-125 78-105 (308)
397 2wsm_A Hydrogenase expression/ 91.9 0.1 3.4E-06 50.9 3.9 27 98-124 28-54 (221)
398 3lnc_A Guanylate kinase, GMP k 91.9 0.057 2E-06 53.2 2.1 25 100-124 27-52 (231)
399 3mfy_A V-type ATP synthase alp 91.8 0.57 1.9E-05 51.3 9.8 87 101-195 228-334 (588)
400 3fdi_A Uncharacterized protein 91.8 0.2 6.9E-06 48.0 5.9 25 101-125 7-31 (201)
401 2xb4_A Adenylate kinase; ATP-b 91.8 0.1 3.4E-06 51.2 3.7 23 102-124 2-24 (223)
402 1e4v_A Adenylate kinase; trans 91.8 0.1 3.5E-06 50.7 3.7 23 102-124 2-24 (214)
403 3bgw_A DNAB-like replicative h 91.7 0.59 2E-05 50.8 10.1 51 100-156 197-247 (444)
404 3b85_A Phosphate starvation-in 91.7 0.079 2.7E-06 51.2 2.8 25 101-126 23-47 (208)
405 1ak2_A Adenylate kinase isoenz 91.7 0.11 3.9E-06 51.1 4.0 26 99-124 15-40 (233)
406 3crm_A TRNA delta(2)-isopenten 91.7 0.1 3.5E-06 53.8 3.7 23 101-123 6-28 (323)
407 3end_A Light-independent proto 91.6 0.22 7.6E-06 51.3 6.4 41 97-141 38-78 (307)
408 2www_A Methylmalonic aciduria 91.6 0.4 1.4E-05 50.4 8.3 29 98-126 72-100 (349)
409 1pgv_A TMD-1, tropomodulin TMD 91.6 0.1 3.5E-06 49.6 3.3 91 539-633 70-169 (197)
410 2r44_A Uncharacterized protein 91.5 0.11 3.9E-06 54.2 4.1 23 102-124 48-70 (331)
411 3p32_A Probable GTPase RV1496/ 91.5 0.22 7.6E-06 52.6 6.2 30 97-126 76-105 (355)
412 1yrb_A ATP(GTP)binding protein 91.4 0.13 4.3E-06 51.8 4.1 28 98-125 12-39 (262)
413 1q57_A DNA primase/helicase; d 91.4 0.66 2.2E-05 51.6 10.4 52 100-156 242-293 (503)
414 1fx0_A ATP synthase alpha chai 91.4 0.2 6.7E-06 54.5 5.8 87 101-195 164-265 (507)
415 2pcj_A ABC transporter, lipopr 91.4 0.083 2.8E-06 51.8 2.6 24 100-123 30-53 (224)
416 3tif_A Uncharacterized ABC tra 91.4 0.094 3.2E-06 51.8 3.1 26 98-123 29-54 (235)
417 2axn_A 6-phosphofructo-2-kinas 91.4 0.61 2.1E-05 51.9 9.9 29 98-126 33-61 (520)
418 1qvr_A CLPB protein; coiled co 91.4 0.48 1.6E-05 56.5 9.7 26 100-125 588-613 (854)
419 2ck3_A ATP synthase subunit al 91.3 0.54 1.8E-05 51.1 9.0 93 101-195 163-272 (510)
420 3cmu_A Protein RECA, recombina 91.2 0.34 1.2E-05 61.7 8.4 84 99-195 1426-1515(2050)
421 3foz_A TRNA delta(2)-isopenten 91.2 0.15 5E-06 52.0 4.2 25 99-123 9-33 (316)
422 3exa_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 52.6 3.6 23 101-123 4-26 (322)
423 4hlc_A DTMP kinase, thymidylat 91.1 0.5 1.7E-05 45.3 7.8 25 101-125 3-27 (205)
424 3vr4_A V-type sodium ATPase ca 91.0 0.41 1.4E-05 52.7 7.7 47 101-153 233-280 (600)
425 2cbz_A Multidrug resistance-as 91.0 0.098 3.4E-06 51.7 2.7 26 99-124 30-55 (237)
426 2d2e_A SUFC protein; ABC-ATPas 91.0 0.11 3.9E-06 51.7 3.2 24 100-123 29-52 (250)
427 1oix_A RAS-related protein RAB 91.0 0.12 4.2E-06 49.0 3.4 25 99-123 28-52 (191)
428 1b0u_A Histidine permease; ABC 90.9 0.099 3.4E-06 52.6 2.7 26 98-123 30-55 (262)
429 3rfe_A Platelet glycoprotein I 90.9 0.35 1.2E-05 42.5 6.0 15 535-549 51-65 (130)
430 3gfo_A Cobalt import ATP-bindi 90.9 0.11 3.8E-06 52.5 3.0 24 99-122 33-56 (275)
431 2dr3_A UPF0273 protein PH0284; 90.8 0.24 8.4E-06 49.0 5.6 47 101-153 24-70 (247)
432 1q3t_A Cytidylate kinase; nucl 90.8 0.16 5.3E-06 50.2 4.0 27 98-124 14-40 (236)
433 2zu0_C Probable ATP-dependent 90.8 0.12 4.2E-06 52.1 3.2 26 98-123 44-69 (267)
434 1ji0_A ABC transporter; ATP bi 90.8 0.11 3.6E-06 51.6 2.7 24 100-123 32-55 (240)
435 2pze_A Cystic fibrosis transme 90.6 0.11 3.7E-06 51.1 2.6 25 100-124 34-58 (229)
436 3a8t_A Adenylate isopentenyltr 90.6 0.15 5.2E-06 52.7 3.8 24 100-123 40-63 (339)
437 2qtf_A Protein HFLX, GTP-bindi 90.6 0.23 8E-06 52.4 5.4 26 98-123 177-202 (364)
438 2olj_A Amino acid ABC transpor 90.6 0.11 3.7E-06 52.2 2.7 26 98-123 48-73 (263)
439 2eyu_A Twitching motility prot 90.6 0.25 8.6E-06 49.5 5.4 27 100-126 25-51 (261)
440 1g6h_A High-affinity branched- 90.6 0.11 3.8E-06 52.0 2.7 24 100-123 33-56 (257)
441 1sgw_A Putative ABC transporte 90.6 0.095 3.2E-06 50.8 2.1 24 100-123 35-58 (214)
442 1mv5_A LMRA, multidrug resista 90.6 0.12 4.1E-06 51.4 2.9 26 98-123 26-51 (243)
443 1tue_A Replication protein E1; 90.5 0.12 4.1E-06 49.1 2.7 27 100-126 58-84 (212)
444 4g1u_C Hemin import ATP-bindin 90.5 0.12 4.3E-06 51.9 3.0 25 99-123 36-60 (266)
445 2ff7_A Alpha-hemolysin translo 90.5 0.12 4E-06 51.5 2.7 24 100-123 35-58 (247)
446 4eaq_A DTMP kinase, thymidylat 90.5 0.17 5.9E-06 49.7 3.9 27 99-125 25-51 (229)
447 2r6a_A DNAB helicase, replicat 90.4 0.82 2.8E-05 50.0 9.8 52 99-155 202-253 (454)
448 1ltq_A Polynucleotide kinase; 90.4 0.15 5.1E-06 52.5 3.6 23 101-123 3-25 (301)
449 1vpl_A ABC transporter, ATP-bi 90.4 0.12 4.1E-06 51.7 2.7 25 99-123 40-64 (256)
450 2q6t_A DNAB replication FORK h 90.3 1.1 3.9E-05 48.7 10.7 52 100-156 200-251 (444)
451 1cp2_A CP2, nitrogenase iron p 90.3 0.18 6.1E-06 50.9 4.1 26 101-126 2-27 (269)
452 3nbx_X ATPase RAVA; AAA+ ATPas 90.3 0.21 7.2E-06 55.1 4.8 23 102-124 43-65 (500)
453 1nlf_A Regulatory protein REPA 90.2 0.14 4.7E-06 52.1 3.1 26 100-125 30-55 (279)
454 2f9l_A RAB11B, member RAS onco 90.2 0.15 5.1E-06 48.8 3.2 24 100-123 5-28 (199)
455 2ghi_A Transport protein; mult 90.2 0.13 4.3E-06 51.7 2.7 25 99-123 45-69 (260)
456 2v9p_A Replication protein E1; 90.2 0.15 5E-06 52.3 3.2 27 98-124 124-150 (305)
457 3llm_A ATP-dependent RNA helic 90.2 1 3.5E-05 44.1 9.5 95 101-197 77-188 (235)
458 2ixe_A Antigen peptide transpo 90.2 0.13 4.3E-06 52.1 2.7 26 98-123 43-68 (271)
459 2dyk_A GTP-binding protein; GT 90.2 0.18 6.2E-06 45.9 3.6 23 101-123 2-24 (161)
460 2ged_A SR-beta, signal recogni 90.2 0.27 9.3E-06 46.4 5.0 26 98-123 46-71 (193)
461 2afh_E Nitrogenase iron protei 90.2 0.39 1.4E-05 48.9 6.5 27 100-126 2-28 (289)
462 2r8r_A Sensor protein; KDPD, P 90.2 0.45 1.5E-05 46.0 6.4 25 102-126 8-32 (228)
463 2qi9_C Vitamin B12 import ATP- 90.1 0.13 4.4E-06 51.2 2.7 24 100-123 26-49 (249)
464 2ocp_A DGK, deoxyguanosine kin 90.1 0.19 6.5E-06 49.8 3.9 25 100-124 2-26 (241)
465 2yz2_A Putative ABC transporte 90.0 0.13 4.6E-06 51.7 2.7 25 99-123 32-56 (266)
466 3eph_A TRNA isopentenyltransfe 89.9 0.19 6.4E-06 53.3 3.8 24 101-124 3-26 (409)
467 2ihy_A ABC transporter, ATP-bi 89.9 0.14 4.6E-06 52.0 2.7 25 99-123 46-70 (279)
468 2nq2_C Hypothetical ABC transp 89.9 0.13 4.6E-06 51.2 2.6 25 100-124 31-55 (253)
469 2wji_A Ferrous iron transport 89.9 0.18 6.3E-06 46.3 3.4 22 101-122 4-25 (165)
470 1svm_A Large T antigen; AAA+ f 89.6 0.19 6.5E-06 53.2 3.6 27 98-124 167-193 (377)
471 3co5_A Putative two-component 89.6 0.093 3.2E-06 47.2 1.1 22 102-123 29-50 (143)
472 3sop_A Neuronal-specific septi 89.5 0.19 6.3E-06 50.8 3.3 24 102-125 4-27 (270)
473 2zej_A Dardarin, leucine-rich 89.4 0.17 5.7E-06 47.6 2.8 21 102-122 4-24 (184)
474 2ce2_X GTPase HRAS; signaling 89.4 0.19 6.6E-06 45.8 3.1 22 102-123 5-26 (166)
475 3fkq_A NTRC-like two-domain pr 89.4 0.49 1.7E-05 50.3 6.7 42 96-141 139-181 (373)
476 4dzz_A Plasmid partitioning pr 89.2 0.44 1.5E-05 45.6 5.7 41 101-145 2-43 (206)
477 3cmu_A Protein RECA, recombina 89.2 0.75 2.6E-05 58.7 9.0 89 99-196 382-472 (2050)
478 3gmt_A Adenylate kinase; ssgci 89.1 0.23 7.7E-06 48.4 3.5 24 101-124 9-32 (230)
479 2vp4_A Deoxynucleoside kinase; 89.1 0.16 5.5E-06 49.9 2.4 26 98-123 18-43 (230)
480 3nh6_A ATP-binding cassette SU 89.0 0.17 5.7E-06 52.0 2.6 25 98-122 78-102 (306)
481 3con_A GTPase NRAS; structural 89.0 0.21 7.2E-06 47.1 3.2 23 101-123 22-44 (190)
482 2pjz_A Hypothetical protein ST 89.0 0.18 6.1E-06 50.6 2.7 24 100-123 30-53 (263)
483 3cmw_A Protein RECA, recombina 89.0 0.78 2.7E-05 57.7 8.9 85 101-194 384-470 (1706)
484 1z2a_A RAS-related protein RAB 88.9 0.27 9.1E-06 45.1 3.8 24 100-123 5-28 (168)
485 3oaa_A ATP synthase subunit al 88.8 1 3.5E-05 48.8 8.5 88 101-196 163-265 (513)
486 3zvl_A Bifunctional polynucleo 88.8 0.16 5.6E-06 54.9 2.5 26 98-123 256-281 (416)
487 2bjv_A PSP operon transcriptio 88.8 0.21 7.1E-06 50.3 3.1 24 101-124 30-53 (265)
488 1nij_A Hypothetical protein YJ 88.7 0.22 7.6E-06 51.6 3.3 25 99-123 3-27 (318)
489 2wjg_A FEOB, ferrous iron tran 88.6 0.24 8.1E-06 46.6 3.2 24 100-123 7-30 (188)
490 3gee_A MNME, tRNA modification 88.6 0.31 1.1E-05 53.5 4.5 25 98-123 232-256 (476)
491 3fvq_A Fe(3+) IONS import ATP- 88.5 0.23 7.8E-06 52.1 3.2 25 99-123 29-53 (359)
492 2qmh_A HPR kinase/phosphorylas 88.5 0.2 6.8E-06 47.4 2.5 24 100-123 34-57 (205)
493 2bbs_A Cystic fibrosis transme 88.5 0.2 6.7E-06 51.1 2.6 27 98-124 62-88 (290)
494 3tui_C Methionine import ATP-b 88.4 0.23 7.9E-06 52.1 3.2 25 98-122 52-76 (366)
495 3gqb_A V-type ATP synthase alp 88.4 0.67 2.3E-05 50.7 6.8 87 101-195 222-328 (578)
496 2orw_A Thymidine kinase; TMTK, 88.3 0.33 1.1E-05 45.8 3.9 26 101-126 4-29 (184)
497 1u8z_A RAS-related protein RAL 88.3 0.25 8.7E-06 45.1 3.2 23 101-123 5-27 (168)
498 3kta_A Chromosome segregation 88.3 0.25 8.7E-06 46.3 3.2 24 101-124 27-50 (182)
499 1r8s_A ADP-ribosylation factor 88.3 0.27 9.4E-06 44.8 3.3 21 103-123 3-23 (164)
500 1nrj_B SR-beta, signal recogni 88.2 0.29 1E-05 47.3 3.7 26 98-123 10-35 (218)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.6e-48 Score=442.52 Aligned_cols=302 Identities=14% Similarity=0.122 Sum_probs=234.6
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC--CHHHHHHHHHHhcccccC--CCcc-hhhhH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED--DLKELQIKIARKIDFVLS--SDES-VRDNA 171 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~--~~~~-~~~~~ 171 (824)
..+++||+|+||||+||||||++||++...+++.+|+.++||++++.. ++..++++|+.+++.... ...+ .....
T Consensus 149 ~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 228 (549)
T 2a5y_B 149 DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 228 (549)
T ss_dssp TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccH
Confidence 346899999999999999999999983111226789999999999985 899999999999975422 1111 12234
Q ss_pred HHHHHHHHHHHcCC-eEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhhhccc-cccccccCCCChHHHHHHHHH
Q 048180 172 ILLENALQTLLETG-KILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLCRQMK-CRERFALNLLTDEEAYLLLIN 249 (824)
Q Consensus 172 ~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~ 249 (824)
..+...+++.|++| ||||||||||+.+++ .+ + ..+||+||||||++.|+..++ ...+|+|++|+.++||+||.+
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~--~-~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 304 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQEETI-RW--A-QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEA 304 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH--H-HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc--c-ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHH
Confidence 56677788888896 999999999998765 21 1 127999999999999998876 346899999999999999999
Q ss_pred HhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhc
Q 048180 250 EVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQ 329 (824)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~ 329 (824)
++|... .++.+++++++|+++|+|+||||+++|+.|+ .+ .|+.+ +.+....... ...++.+++.+||++
T Consensus 305 ~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~--~~----~w~~~-~~l~~~l~~~--~~~~i~~~l~~Sy~~ 373 (549)
T 2a5y_B 305 YGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCE--PK----TFEKM-AQLNNKLESR--GLVGVECITPYSYKS 373 (549)
T ss_dssp TSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCC--SS----SHHHH-HHHHHHHHHH--CSSTTCCCSSSSSSS
T ss_pred HhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhc--cc----hHHHH-HHhHHHhhcc--cHHHHHHHHhccccc
Confidence 998653 3578889999999999999999999999987 33 25443 3333221110 124688999999999
Q ss_pred ccccccCCcchhhhhh-----------hhhccCCCcccchHHHHHHHHHh--ccccccccchHHHHhhHHHHHHHHHhcC
Q 048180 330 LNKYSSYGCNTRECLL-----------YCAMYPRNHAFVAEELMKDWMTE--GLLGEEMEGIDERFGKAKEILEELKDAS 396 (824)
Q Consensus 330 L~~~~~~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~Wiae--g~i~~~~~~~~~~~~~~~~~~~~L~~~s 396 (824)
||++ +|.||+ |||+||+++.|+ +++|+|+ ||+.. .....+.+++++ ||++|+++|
T Consensus 374 L~~~------lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~-~~~~~~~~~~~~-~l~~L~~rs 441 (549)
T 2a5y_B 374 LAMA------LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICS-NEEEQLDDEVAD-RLKRLSKRG 441 (549)
T ss_dssp HHHH------HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--------CCCTHHHHH-HHHHTTTBS
T ss_pred ccHH------HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceecc-CCCCCCHHHHHH-HHHHHHHcC
Confidence 9999 999999 999999999998 8999999 99987 232344567777 999999999
Q ss_pred cccccccC-cCCccccchHHHHHHHhhhccC
Q 048180 397 FLVGIISD-ENEIVKMHPLMFDMASKMEKKT 426 (824)
Q Consensus 397 ll~~~~~~-~~~~~~mhdl~~dl~~~i~~~e 426 (824)
|+ +.... ....|+|||++|++|+.++.++
T Consensus 442 Ll-~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 442 AL-LSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp SC-SEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred Ce-eEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 99 87443 3468999999999999988765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-39 Score=375.23 Aligned_cols=288 Identities=13% Similarity=0.154 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccce-EEEEEeCCcCCHHHHHHHH
Q 048180 75 TRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNT-FIWVEASYEDDLKELQIKI 153 (824)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i 153 (824)
+++++.++.+...+.+ .++.+||+|+||||+||||||+++|++.+. +.+|+. ++||++++.++...++..|
T Consensus 131 VGRe~eLeeL~elL~~------~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV--~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp CCCHHHHHHHHHHHHH------CCSSCEEEECCSTTSSHHHHHHHHHHHCHH--HHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc------cCCCeEEEEEcCCCccHHHHHHHHHHhhHH--HHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 3444444454444432 234799999999999999999999987544 466986 9999999999998988888
Q ss_pred HHhccccc---CCC----cchhhhHHHHHHHHHHHH---cCCeEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhh
Q 048180 154 ARKIDFVL---SSD----ESVRDNAILLENALQTLL---ETGKILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSL 223 (824)
Q Consensus 154 ~~~l~~~~---~~~----~~~~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v 223 (824)
+..++... ... .......+.+.+.+++.+ .+||+||||||||+.++|+.+. +||+||||||++.+
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHH
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHH
Confidence 87654321 111 111223445566666655 6899999999999998888762 78999999999999
Q ss_pred hhccccccccccC------CCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcC-CChH
Q 048180 224 CRQMKCRERFALN------LLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIG-FDFI 296 (824)
Q Consensus 224 ~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~-~~~~ 296 (824)
+..+.....|+++ +|+.+|||+||.++.... ..++..+| |+|+||||+++|+.|+ .+ .+.+
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr--~k~~s~e 345 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIR--DGLATWD 345 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHH--HSCSSHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHh--CCCCCHH
Confidence 8765555577888 999999999999984321 12233333 9999999999999999 44 3678
Q ss_pred HHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccccCCcch-hhhhhhhhccCCCcccchHHHHHHHHHhccccccc
Q 048180 297 SWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNT-RECLLYCAMYPRNHAFVAEELMKDWMTEGLLGEEM 375 (824)
Q Consensus 297 ~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~-k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~ 375 (824)
+|+.. ....+..+|.+||+.||++ . |.||+|||+||+++.|+++.++.+|+++| .
T Consensus 346 eW~~~-------------~~~~I~aaLelSYd~Lp~e------elK~cFL~LAIFPed~~I~~elLa~LW~aeG---e-- 401 (1221)
T 1vt4_I 346 NWKHV-------------NCDKLTTIIESSLNVLEPA------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---K-- 401 (1221)
T ss_dssp HHHHC-------------SCHHHHHHHHHHHHHSCTT------HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---S--
T ss_pred HHhcC-------------ChhHHHHHHHHHHHhCCHH------HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---H--
Confidence 88753 1257899999999999999 8 99999999999999999999999999887 2
Q ss_pred cchHHHHhhHHHHHHHHHhcCcccccccCcCCccccchHHHHHHH
Q 048180 376 EGIDERFGKAKEILEELKDASFLVGIISDENEIVKMHPLMFDMAS 420 (824)
Q Consensus 376 ~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdl~~dl~~ 420 (824)
+.++.+|++|+++||| +. ......|+|||++++++.
T Consensus 402 -------edAe~~L~eLvdRSLL-q~-d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 -------SDVMVVVNKLHKYSLV-EK-QPKESTISIPSIYLELKV 437 (1221)
T ss_dssp -------HHHHHHHHHHHTSSSS-SB-CSSSSEEBCCCHHHHHHH
T ss_pred -------HHHHHHHHHHHhhCCE-EE-eCCCCEEEehHHHHHHhc
Confidence 2478899999999999 76 334578999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-37 Score=396.22 Aligned_cols=315 Identities=17% Similarity=0.190 Sum_probs=248.3
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccc-cceEEEEEeCCcCC--HHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSH-FNTFIWVEASYEDD--LKEL 149 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-F~~~~wv~~s~~~~--~~~~ 149 (824)
.++|+++.++++...+... +++.++|+|+||||+||||||+++|++.+.. ..+ |+.++||++++..+ ....
T Consensus 125 ~~vgR~~~~~~l~~~l~~~-----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL-----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLL-EGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT-----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHH-TTTSTTCEEEEECCSCCHHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhc-----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHH-HhhCCCeEEEEEECCcCchHHHHH
Confidence 3556666666666555332 3568999999999999999999999986543 344 46778999998543 4455
Q ss_pred HHHHHHhcccccCCCcchhhhHHHHHHHHHHHHcCC--eEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhhhc-
Q 048180 150 QIKIARKIDFVLSSDESVRDNAILLENALQTLLETG--KILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLCRQ- 226 (824)
Q Consensus 150 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~~~- 226 (824)
+..++.++................+.+.++..+.+| ||||||||||+..+|+.+ .+||+||||||++.|+..
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhh
Confidence 677777776544333333445677888888888877 999999999999888765 578999999999999854
Q ss_pred cccccccccCC-CChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 048180 227 MKCRERFALNL-LTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSE 305 (824)
Q Consensus 227 ~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~ 305 (824)
++....+++.+ |++++||+||...++. ..+.+++++++|+++|+|+||||+++|++|+ .+. ..|...++.+
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~----~~~~~~~~~~~i~~~~~glPLal~~~~~~l~--~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNM----KKEDLPAEAHSIIKECKGSPLVVSLIGALLR--DFP--NRWAYYLRQL 345 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTS----CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHH--HSS--SCHHHHHHHH
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCC----ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhh--cCh--hHHHHHHHHH
Confidence 45567889986 9999999999999864 3345567799999999999999999999998 333 4799998888
Q ss_pred HhhccC-----chhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhccccccccchHH
Q 048180 306 LDAFSS-----LKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGEEMEGIDE 380 (824)
Q Consensus 306 ~~~~~~-----~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~ 380 (824)
...... .......+..++.+||+.||++ .|.||+|||+||+++.|+++.++++|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~------~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------ 407 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------ 407 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT------THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHH------HHHHHHHhCccCCCCeeCHHHHHHHhCCC------------
Confidence 754422 1122357999999999999999 99999999999999999999999999654
Q ss_pred HHhhHHHHHHHHHhcCcccccccCc-CCccccchHHHHHHHhhhccC
Q 048180 381 RFGKAKEILEELKDASFLVGIISDE-NEIVKMHPLMFDMASKMEKKT 426 (824)
Q Consensus 381 ~~~~~~~~~~~L~~~sll~~~~~~~-~~~~~mhdl~~dl~~~i~~~e 426 (824)
++.++.++++|+++||+ +....+ ...|+||+++|++++..+.++
T Consensus 408 -~~~~~~~l~~L~~~sl~-~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLL-FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSC-EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHhccce-EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 25678999999999999 763222 236999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=331.26 Aligned_cols=310 Identities=17% Similarity=0.216 Sum_probs=227.2
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhcccc-ceEEEEEeCCcCCHHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHF-NTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~ 151 (824)
..+|+++.++.+...+... .++.++|+|+||||+||||||+++|++.... ..+| +.++|+++++. +...++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL-----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLL-EGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS-----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHH-HHHCTTCEEEEEEESC-CHHHHHH
T ss_pred eecccHHHHHHHHHHHhcc-----cCCCceEEEEcCCCCCHHHHHHHHHhchhHH-HhhCCCceEEEECCCC-chHHHHH
Confidence 3556666666665554321 3457999999999999999999999875321 3458 58999999775 3444444
Q ss_pred HH---HHhcccccCCCcchhhhHHHHHHHHHHHHcC--CeEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhhhc
Q 048180 152 KI---ARKIDFVLSSDESVRDNAILLENALQTLLET--GKILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLCRQ 226 (824)
Q Consensus 152 ~i---~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~~~ 226 (824)
.+ +..++...............+...+++.+.+ +++||||||||+...++.+ ..|++||||||+..++..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHh
Confidence 44 3344321111111122334555666666656 7899999999987766543 468899999999998876
Q ss_pred ccccccccc---CCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHH
Q 048180 227 MKCRERFAL---NLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALM 303 (824)
Q Consensus 227 ~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~ 303 (824)
+. ...+++ ++|+.+++++||...++.. .....+.+++|+++|+|+||||+.+|+.++ .. ...|..+++
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~--~~--~~~w~~~l~ 343 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLR--DF--PNRWEYYLK 343 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHH--HS--TTCHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHh--cC--chhHHHHHH
Confidence 53 234444 5899999999999998752 233346789999999999999999999998 33 247999888
Q ss_pred HHHhhccC-----chhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhccccccccch
Q 048180 304 SELDAFSS-----LKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGLLGEEMEGI 378 (824)
Q Consensus 304 ~~~~~~~~-----~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~ 378 (824)
.+...... .......+..++..||+.||++ .|.||+++|+||+++.|+.+.++..|.++
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~------~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------- 407 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKVLCILWDME---------- 407 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT------THHHHHHGGGCCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH------HHHHHHHccccCCCCccCHHHHHHHhccC----------
Confidence 87654321 1112357899999999999999 99999999999999999999999999543
Q ss_pred HHHHhhHHHHHHHHHhcCcccccccC-cCCccccchHHHHHHHhhh
Q 048180 379 DERFGKAKEILEELKDASFLVGIISD-ENEIVKMHPLMFDMASKME 423 (824)
Q Consensus 379 ~~~~~~~~~~~~~L~~~sll~~~~~~-~~~~~~mhdl~~dl~~~i~ 423 (824)
.+.+..++++|+++||+ +.... ....|+||++++++++...
T Consensus 408 ---~~~~~~~l~~L~~~~Ll-~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ---TEEVEDILQEFVNKSLL-FCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ---HHHHHHHHHHHHHTTSS-EEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhCcCe-EEecCCCccEEEEcHHHHHHHHhhh
Confidence 13467899999999999 65222 2357999999999998773
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.4e-26 Score=267.44 Aligned_cols=368 Identities=16% Similarity=0.104 Sum_probs=234.1
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. ..+..+++|++++|.+..++. +.++++|++|++++|. +..+++..|.++++|++|+|++|.+.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCccc
Confidence 4445666777776 456899999999999988875 8899999999999996 55666666799999999999999998
Q ss_pred cc-cccccCcccccEEecccccccccCC--CcccCCCccEEeccCCCCc--ccCcccccCCCCcEEeccCccccccchhh
Q 048180 507 IL-PKSLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGSGIA--EFPDGMNHLTKLLFLNLSRTRVRNFPLHL 581 (824)
Q Consensus 507 ~l-p~~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~ 581 (824)
.+ |..++++.+|++|++++|. ++.+| .++++++|++|++++|.+. .+|..++++++|++|++++|.+..+++..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 77 7789999999999999975 45554 4999999999999999988 58999999999999999999987776655
Q ss_pred hcCCCCCc----EEEeecCccccccccccch-------------hhhhchHh----------------------------
Q 048180 582 VTSLHNLQ----EFSMIGCDLLCLPRSLMQE-------------DYAAFIED---------------------------- 616 (824)
Q Consensus 582 l~~L~~L~----~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~---------------------------- 616 (824)
++.+++|+ +|++++|.+..++...... ........
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 55555443 5666666554433211000 00011122
Q ss_pred ----------------------------hhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccch
Q 048180 617 ----------------------------VRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTL 668 (824)
Q Consensus 617 ----------------------------l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 668 (824)
+..+++|+.|++.++.+..++ ....+.+|+.|.+..+.++
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~--------- 320 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLK--------- 320 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCS---------
T ss_pred HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCc---------
Confidence 333444444444444444433 1123345555555544331
Q ss_pred hhhccCCCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecCCCccccc-cchhhhhccccceeccccccchhhh
Q 048180 669 AFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLF-KYGVWCCLRNLEELVIANCRNLEKV 747 (824)
Q Consensus 669 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~-~~~~l~~l~~L~~L~l~~~~~l~~i 747 (824)
.++.. ..++|++|++.+|.......+..+++|+.|++++| .+.... ....+..+++|+.|++++|. +..+
T Consensus 321 ----~lp~~---~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 391 (606)
T 3vq2_A 321 ----QFPTL---DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM 391 (606)
T ss_dssp ----SCCCC---CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEE
T ss_pred ----ccccC---CCCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccc
Confidence 11211 34555555555554444444445555555555543 222221 01223344444444444442 2212
Q ss_pred hcccC----------------CCCC-CCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCC--CCcccc
Q 048180 748 IEQDD----------------DENS-NPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLER--FPISLW 808 (824)
Q Consensus 748 ~~~~~----------------~~~~-~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~--lp~~~~ 808 (824)
+.... ...+ ..+..+++|++|++++|.-....|..+..+++|++|++++|. +.. +|..+.
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 470 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFA 470 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCT
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhc
Confidence 11000 0001 234567788888888875444456667788888888888864 443 677788
Q ss_pred ccccceeccCCCC
Q 048180 809 VENYAQKLKSPCS 821 (824)
Q Consensus 809 ~l~~L~~L~~~~~ 821 (824)
.+++|+.|++.+|
T Consensus 471 ~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 471 NTTNLTFLDLSKC 483 (606)
T ss_dssp TCTTCCEEECTTS
T ss_pred cCCCCCEEECCCC
Confidence 8888888888877
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.8e-25 Score=239.55 Aligned_cols=301 Identities=14% Similarity=0.152 Sum_probs=226.2
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
...++++++.++.+..++.+..+++|++|++++|. +..++. +..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 45788888888888888778888888888888885 455555 678888888888888887775 58888888888888
Q ss_pred cccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 525 NCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 525 ~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
+| .+..+|.+.++++|++|++++|.....+..+..+++|++|++++|.+..+++ ++.+++|++|++++|.+..+
T Consensus 119 ~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~--- 192 (347)
T 4fmz_A 119 ED-NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--- 192 (347)
T ss_dssp TS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC---
T ss_pred CC-cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc---
Confidence 85 4566666888888888888888444344458888888888888888777655 77888888888888765432
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcC
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWN 684 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 684 (824)
..+..+++|+.|+++.+.+...+. ...+++
T Consensus 193 ----------~~~~~l~~L~~L~l~~n~l~~~~~----------------------------------------~~~~~~ 222 (347)
T 4fmz_A 193 ----------SPLASLTSLHYFTAYVNQITDITP----------------------------------------VANMTR 222 (347)
T ss_dssp ----------GGGGGCTTCCEEECCSSCCCCCGG----------------------------------------GGGCTT
T ss_pred ----------ccccCCCccceeecccCCCCCCch----------------------------------------hhcCCc
Confidence 126677788888887776654332 123467
Q ss_pred cceeeecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccc
Q 048180 685 TSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRS 764 (824)
Q Consensus 685 L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~ 764 (824)
|++|++++|.......+..+++|+.|++++| .+..+ ..+..+++|+.|++++| .++.++ .+..+++
T Consensus 223 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~ 288 (347)
T 4fmz_A 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQ 288 (347)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTT
T ss_pred CCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCC
Confidence 7777777776444445778889999999886 55554 23677899999999988 455443 3457899
Q ss_pred cCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 765 LRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 765 L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
|++|++++|.--...+..+..+++|+.|++++|+ +..+|. +..+++|+.|++.+|
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 9999999995444445667889999999999975 777776 788999999999887
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3e-25 Score=249.81 Aligned_cols=373 Identities=15% Similarity=0.114 Sum_probs=274.7
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. .+..+++|++++|.+..++. +.++++|++|++++|.....+++..|..+++|++|+|++|.+.
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 4445566777776 56889999999999888743 8899999999999997666777777899999999999999987
Q ss_pred cc-cccccCcccccEEecccccccccCC-C--cccCCCccEEeccCCCCccc-Ccc-cccCCCCcEEeccCccccccchh
Q 048180 507 IL-PKSLSSLKYLTVLLLQNCIYLTCLP-S--LAELVELMVLDVSGSGIAEF-PDG-MNHLTKLLFLNLSRTRVRNFPLH 580 (824)
Q Consensus 507 ~l-p~~i~~l~~L~~L~L~~c~~~~~lp-~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~~~ 580 (824)
.+ |..++.+.+|++|++++|.....+| . ++++++|++|++++|.+..+ |.. +.++++|++|++++|.+...++.
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 66 6789999999999999986544344 3 89999999999999999977 554 88999999999999999877766
Q ss_pred hhcCC--CCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccch-hhhh-hhhhcccceeEEEEec
Q 048180 581 LVTSL--HNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF-KEYI-SSQHWLWLQSYKFSVG 656 (824)
Q Consensus 581 ~l~~L--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-~~~~-~~~~~~~L~~L~l~~~ 656 (824)
.+..+ .+|+.|++.+|.+...+..... ......+..+++|+.|++++|.+... +..+ ......+|+.+.++.+
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLG---WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTT---HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred hhhccccccccccccccCcccccchhhcc---ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 67666 6899999999987665432211 11123355678999999999887643 2222 2223367788777644
Q ss_pred cCCCccccccchhhhccCCC--CCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccc
Q 048180 657 ALGKGKLRGNTLAFMKEFPN--DPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRN 732 (824)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~ 732 (824)
........... ...... ......++|++|++++|...... .+..+++|+.|++++| .+..+++ ..+..+++
T Consensus 250 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~ 324 (455)
T 3v47_A 250 YNMGSSFGHTN---FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDD-NAFWGLTH 324 (455)
T ss_dssp TTTSCCTTCCS---SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTT
T ss_pred cccccccchhh---hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccCh-hHhcCccc
Confidence 33211110000 000100 01123468999999988755543 4778999999999985 5555543 34678999
Q ss_pred cceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcc-ccCcccCCCccEEEecCCCCcCCCCcc-cccc
Q 048180 733 LEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFM-YSGEAQCDFVQTIGIWSCCKLERFPIS-LWVE 810 (824)
Q Consensus 733 L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~-~~~~~~lpsL~~L~i~~C~~L~~lp~~-~~~l 810 (824)
|+.|++++| .++.++. ..+..+++|++|+++++ .+..+ |..+..+++|++|++++| +++.+|.. +..+
T Consensus 325 L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 394 (455)
T 3v47_A 325 LLKLNLSQN-FLGSIDS-------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL 394 (455)
T ss_dssp CCEEECCSS-CCCEECG-------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred CCEEECCCC-ccCCcCh-------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccC
Confidence 999999988 4444431 13457899999999999 45555 667889999999999985 78888875 5789
Q ss_pred ccceeccCCCC
Q 048180 811 NYAQKLKSPCS 821 (824)
Q Consensus 811 ~~L~~L~~~~~ 821 (824)
++|+.|++.++
T Consensus 395 ~~L~~L~l~~N 405 (455)
T 3v47_A 395 TSLQKIWLHTN 405 (455)
T ss_dssp TTCCEEECCSS
T ss_pred CcccEEEccCC
Confidence 99999999876
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=258.22 Aligned_cols=374 Identities=17% Similarity=0.130 Sum_probs=256.5
Q ss_pred ecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcc
Q 048180 430 FKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGI 507 (824)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 507 (824)
...+..+..+|. ..+..+++|++++|.+..++. +.++++|++|++++|. +..+++..|.++++|++|+|++|.+..
T Consensus 13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCc
Confidence 334556667776 456789999999999988764 8899999999999996 566777778999999999999999987
Q ss_pred cc-ccccCcccccEEecccccccccCC--CcccCCCccEEeccCCCCcc--cCcccccCCCCcEEeccCccccccchhhh
Q 048180 508 LP-KSLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGSGIAE--FPDGMNHLTKLLFLNLSRTRVRNFPLHLV 582 (824)
Q Consensus 508 lp-~~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~l 582 (824)
+| ..++.+.+|++|++++| .++.+| .++++++|++|++++|.+.. +|..++++++|++|++++|.+..+++..+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred cCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 76 57899999999999996 566666 39999999999999999885 78999999999999999999988877667
Q ss_pred cCCCCC----cEEEeecCccccccccccch--------------------------------------------------
Q 048180 583 TSLHNL----QEFSMIGCDLLCLPRSLMQE-------------------------------------------------- 608 (824)
Q Consensus 583 ~~L~~L----~~L~l~~~~l~~~~~~~~~~-------------------------------------------------- 608 (824)
+.+++| ..|++++|.+...+......
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred cchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 777777 78888887655432211000
Q ss_pred --------------------hhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccch
Q 048180 609 --------------------DYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTL 668 (824)
Q Consensus 609 --------------------~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 668 (824)
........+..+++|+.|+++.+.+..++..+. .. +|+.|.+..+.+..... ...
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~~~~l~~--~~l 324 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCKFGQFPT--LKL 324 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCBCSSCCB--CBC
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCcccccCc--ccc
Confidence 000112334455667777776666665554442 22 56666665554321110 000
Q ss_pred hhhccC--------CCCCccCCcCcceeeeccccccee----eccccCCCCCEEEEecCCCccccccchhhhhcccccee
Q 048180 669 AFMKEF--------PNDPIWLPWNTSELLLVHCNAVTQ----MTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEEL 736 (824)
Q Consensus 669 ~~~~~l--------~~~~~~~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L 736 (824)
..++.+ .......+++|++|++++|.-... ..+.++++|+.|++++| .+..+++. +..+++|+.|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L 401 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHL 401 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEE
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-cccccccc--ccccCCCCEE
Confidence 000000 000113345666666666543322 13455677777777664 34444332 5567777777
Q ss_pred ccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCc-CCCCcccccccccee
Q 048180 737 VIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKL-ERFPISLWVENYAQK 815 (824)
Q Consensus 737 ~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L-~~lp~~~~~l~~L~~ 815 (824)
++++|. +..++. ...+..+++|++|++++|......+..+..+++|++|++++|.-. ..+|..+..+++|+.
T Consensus 402 ~l~~n~-l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 402 DFQHSN-LKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp ECTTSE-EESCTT------SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred EccCCc-cccccc------hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 777663 222211 123457899999999999655556667888999999999998533 368888999999999
Q ss_pred ccCCCC
Q 048180 816 LKSPCS 821 (824)
Q Consensus 816 L~~~~~ 821 (824)
|++.+|
T Consensus 475 L~l~~n 480 (570)
T 2z63_A 475 LDLSQC 480 (570)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 999887
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-25 Score=266.80 Aligned_cols=343 Identities=15% Similarity=0.152 Sum_probs=229.5
Q ss_pred ccceeecc-ccCCCccEEEeccCCCcC------------------CCC-cc--CCCCccEEEcCCCCCcccCChhhhcCC
Q 048180 435 RLRKFVYE-DWSGDVERVSLMGNNLRE------------------LRT-CP--MFCKLTTLFLQGNPLDLQLDNDFFNSF 492 (824)
Q Consensus 435 ~~~~~~~~-~~~~~~~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l 492 (824)
.+..+|.. .....++.|++.+|.+.. +|. +. .+++|++|++++|.....+|.. +.++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCC
Confidence 33446654 345688999999998887 776 44 8999999999999877888855 5889
Q ss_pred CCCcEEEecCCC-Cc--cccccccCcc-------cccEEecccccccccCCC---cccCCCccEEeccCCCCcccCcccc
Q 048180 493 PNLKILNLSDTS-MG--ILPKSLSSLK-------YLTVLLLQNCIYLTCLPS---LAELVELMVLDVSGSGIAEFPDGMN 559 (824)
Q Consensus 493 ~~Lr~L~L~~~~-~~--~lp~~i~~l~-------~L~~L~L~~c~~~~~lp~---i~~L~~L~~L~l~~~~l~~lp~~i~ 559 (824)
++|++|+|++|. +. .+|..++.+. +|++|+|++|. +..+|. ++++++|++|++++|.+..+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 999999999998 76 4888777766 99999999875 447886 889999999999999888888 888
Q ss_pred cCCCCcEEeccCccccccchhhhcCCCC-CcEEEeecCccccccccccchhhhhchHhhhcC--CCccEEEEEecCccch
Q 048180 560 HLTKLLFLNLSRTRVRNFPLHLVTSLHN-LQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKL--RNLNVFDFTFVSLQSF 636 (824)
Q Consensus 560 ~L~~L~~L~l~~~~~~~~~~~~l~~L~~-L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~ 636 (824)
++++|++|++++|.+..+|.. +.++++ |+.|++++|.+..+|.. +..+ ++|+.|+++.|.+...
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~------------~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNI------------FNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSCCCSCCSC------------CCTTCSSCEEEEECCSSCTTTT
T ss_pred CCCcceEEECcCCccccchHH-HhhccccCCEEECcCCCCCcCchh------------hhccccCCCCEEECcCCcCCCc
Confidence 999999999999998877765 788888 99999999887655432 2222 3477777777766432
Q ss_pred hh----hhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceee-c--------ccc
Q 048180 637 KE----YISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM-T--------IPN 703 (824)
Q Consensus 637 ~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-~--------l~~ 703 (824)
.. ........+|+.|.++.+.+. .++......+++|+.|++++|.-...+ . .++
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred cccchhhhccccCCCcCEEEccCCcCC-------------ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 21 111122336666666554442 111111223456777777666433211 1 112
Q ss_pred CCCCCEEEEecCCCccccccchhhh--hccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccC------Ccc
Q 048180 704 LQNLKFLEIFNCEGLKYLFKYGVWC--CLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSN------LPE 775 (824)
Q Consensus 704 l~~L~~L~L~~c~~l~~l~~~~~l~--~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~------~~~ 775 (824)
+++|+.|+|++| .+..+|. .+. .+++|+.|+|++| .+..++ ..+..+++|+.|+|++ +.-
T Consensus 727 l~~L~~L~Ls~N-~L~~lp~--~l~~~~l~~L~~L~Ls~N-~L~~lp--------~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 727 TYLLTTIDLRFN-KLTSLSD--DFRATTLPYLSNMDVSYN-CFSSFP--------TQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp GGGCCEEECCSS-CCCCCCG--GGSTTTCTTCCEEECCSS-CCSSCC--------CGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred cCCccEEECCCC-CCccchH--HhhhccCCCcCEEEeCCC-CCCccc--------hhhhcCCCCCEEECCCCCCcccccc
Confidence 336777777764 4555532 232 6677777777766 333333 2344667777777765 323
Q ss_pred hhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 776 LRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 776 L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
...+|..+..+++|+.|++++| ++..+|..+. ++|+.|++.+|
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSC
T ss_pred cccChHHHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCC
Confidence 3455666667777777777775 4577776644 47777777666
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-25 Score=266.89 Aligned_cols=311 Identities=15% Similarity=0.137 Sum_probs=202.2
Q ss_pred CChhhhcCCCCCcEEEecCCCCcc------------------cccccc--CcccccEEecccccccccCC-CcccCCCcc
Q 048180 484 LDNDFFNSFPNLKILNLSDTSMGI------------------LPKSLS--SLKYLTVLLLQNCIYLTCLP-SLAELVELM 542 (824)
Q Consensus 484 ~~~~~~~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~ 542 (824)
+|.. +.++++|++|+|++|.+.. +|..++ ++.+|++|+|++|.....+| .++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5554 5778888888888888766 788777 88888888888877777777 488888888
Q ss_pred EEeccCCC-Ccc--cCcccccCC-------CCcEEeccCccccccch-hhhcCCCCCcEEEeecCccccccccccchhhh
Q 048180 543 VLDVSGSG-IAE--FPDGMNHLT-------KLLFLNLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYA 611 (824)
Q Consensus 543 ~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~ 611 (824)
+|++++|+ ++. +|..+++++ +|++|++++|.+..+|. ..++++++|++|++++|.+..+|
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--------- 589 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--------- 589 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC---------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch---------
Confidence 88888886 764 777666655 88888888888777765 24778888888888887755432
Q ss_pred hchHhhhcCCCccEEEEEecCccchhhhhhhhhccc-ceeEEEEeccCCCccccccchh--hhc-----------cCCCC
Q 048180 612 AFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLW-LQSYKFSVGALGKGKLRGNTLA--FMK-----------EFPND 677 (824)
Q Consensus 612 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~~-----------~l~~~ 677 (824)
.++.+++|+.|+++.|.+..+|..+ ..+.+ |+.|.++.+.+........... .+. .++..
T Consensus 590 ----~~~~L~~L~~L~Ls~N~l~~lp~~l--~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 590 ----AFGTNVKLTDLKLDYNQIEEIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp ----CCCTTSEESEEECCSSCCSCCCTTS--CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred ----hhcCCCcceEEECcCCccccchHHH--hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 3455555666666555555444332 22334 5555554443321000000000 000 00100
Q ss_pred C----ccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchh------hhhccccceeccccccchh
Q 048180 678 P----IWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGV------WCCLRNLEELVIANCRNLE 745 (824)
Q Consensus 678 ~----~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~------l~~l~~L~~L~l~~~~~l~ 745 (824)
+ ....++|+.|++++|.....+ .+..+++|+.|+|++| .+..+|.... +.++++|+.|+|++| .+.
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~ 741 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT 741 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc
Confidence 0 112347888888877644322 2336788888888875 5556543211 123448888888887 455
Q ss_pred hhhcccCCCCCCCcc--cccccCeEeccCCcchhccccCcccCCCccEEEecC------CCCcCCCCccccccccceecc
Q 048180 746 KVIEQDDDENSNPQV--CWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWS------CCKLERFPISLWVENYAQKLK 817 (824)
Q Consensus 746 ~i~~~~~~~~~~~~~--~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~------C~~L~~lp~~~~~l~~L~~L~ 817 (824)
.++. .+. .+|+|+.|+|+++ .+..+|..+..+++|+.|++++ |.-...+|..+.++++|+.|+
T Consensus 742 ~lp~--------~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 742 SLSD--------DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp CCCG--------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred cchH--------HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 5542 232 6789999999988 5667888888899999999976 444567888888999999999
Q ss_pred CCCC
Q 048180 818 SPCS 821 (824)
Q Consensus 818 ~~~~ 821 (824)
+.+|
T Consensus 813 Ls~N 816 (876)
T 4ecn_A 813 IGSN 816 (876)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9887
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=4.4e-25 Score=258.01 Aligned_cols=377 Identities=17% Similarity=0.072 Sum_probs=249.5
Q ss_pred ecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcc
Q 048180 430 FKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGI 507 (824)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 507 (824)
...+..+..+|. ..+..+++|++++|.+..++. +.++++|++|++++|. +..+++..|.++++|++|+|++|.+..
T Consensus 18 ~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 18 NCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp ECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred ECCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccc
Confidence 344556677776 466789999999999988854 8899999999999997 445555557899999999999999866
Q ss_pred c-cccccCcccccEEecccccccccC-C-CcccCCCccEEeccCCCCcccC-cccccCCCCcEEeccCccccccchhhhc
Q 048180 508 L-PKSLSSLKYLTVLLLQNCIYLTCL-P-SLAELVELMVLDVSGSGIAEFP-DGMNHLTKLLFLNLSRTRVRNFPLHLVT 583 (824)
Q Consensus 508 l-p~~i~~l~~L~~L~L~~c~~~~~l-p-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~l~ 583 (824)
+ |..++.+.+|++|++++|. ++.+ | .++++++|++|++++|.+..++ ..+..+++|++|++++|.+..+++..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred cChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence 6 6689999999999999975 5555 4 5999999999999999998763 3344599999999999999888887799
Q ss_pred CCCCCc--EEEeecCccccccccccchh----------------------------------------------------
Q 048180 584 SLHNLQ--EFSMIGCDLLCLPRSLMQED---------------------------------------------------- 609 (824)
Q Consensus 584 ~L~~L~--~L~l~~~~l~~~~~~~~~~~---------------------------------------------------- 609 (824)
.+++|+ +|++++|.+...+.......
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 999999 88899887665432210000
Q ss_pred -----------h-hhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccc-cchhhhc----
Q 048180 610 -----------Y-AAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRG-NTLAFMK---- 672 (824)
Q Consensus 610 -----------~-~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~---- 672 (824)
. ......++.+++|+.|++++|.+..+|..+ ..+++|+.|.++.+.+....... .....++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL--VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC--CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh--cccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 0 000112556677777777777766665543 34566777766555432110000 0000000
Q ss_pred -------cCCCCCccCCcCcceeeecccccceee----ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccc
Q 048180 673 -------EFPNDPIWLPWNTSELLLVHCNAVTQM----TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANC 741 (824)
Q Consensus 673 -------~l~~~~~~~~~~L~~L~l~~~~~~~~~----~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~ 741 (824)
.++......+++|++|++++|...... .+..+++|+.|++++| .+...++ ..+..+++|+.|++++|
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKT-EAFKECPQLELLDLAFT 410 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECT-TTTTTCTTCSEEECTTC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCH-HHhcCCccCCeEECCCC
Confidence 111112234456666666665543322 3455666666666664 3333322 23556667777777666
Q ss_pred cchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCC----CCccccccccceecc
Q 048180 742 RNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLER----FPISLWVENYAQKLK 817 (824)
Q Consensus 742 ~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~----lp~~~~~l~~L~~L~ 817 (824)
.-....+ ...+..+++|++|++++|.--...+..+..+++|++|++++|+ +.. .+..+..+++|+.|+
T Consensus 411 ~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 411 RLKVKDA-------QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp CEECCTT-------CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEE
T ss_pred cCCCccc-------chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEE
Confidence 3221111 1124567888888888885433445567788888888888874 443 224577888888888
Q ss_pred CCCC
Q 048180 818 SPCS 821 (824)
Q Consensus 818 ~~~~ 821 (824)
+.+|
T Consensus 483 Ls~n 486 (606)
T 3t6q_A 483 LSFC 486 (606)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8877
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=4.1e-25 Score=243.29 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=227.0
Q ss_pred cCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCCC-cccCCCcc
Q 048180 465 PMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLPS-LAELVELM 542 (824)
Q Consensus 465 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~ 542 (824)
..++++++|++.++. +..+|..++..+++|++|+|++|.+..+|. .+..+.+|++|++++|......|. ++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 346778888888875 677888777888888888888888877765 778888888888888653333344 78888888
Q ss_pred EEeccCCCCcccCccc-ccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCC
Q 048180 543 VLDVSGSGIAEFPDGM-NHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLR 621 (824)
Q Consensus 543 ~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~ 621 (824)
+|++++|.++.+|..+ .++++|++|++++|.+..+++..++++++|++|++++|.+..+ .++.++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~l~ 186 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------------DLSLIP 186 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--------------CGGGCT
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--------------cccccc
Confidence 8888888888888764 7888888888888888777776688888888888888875442 245667
Q ss_pred CccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceeecc
Q 048180 622 NLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTI 701 (824)
Q Consensus 622 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l 701 (824)
+|+.|+++.|.+..++ ....|+.|.++.+.+... +...+++|+.|++.+|......++
T Consensus 187 ~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~----------------~~~~~~~L~~L~l~~n~l~~~~~l 244 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLA------IPIAVEELDASHNSINVV----------------RGPVNVELTILKLQHNNLTDTAWL 244 (390)
T ss_dssp TCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCEE----------------ECCCCSSCCEEECCSSCCCCCGGG
T ss_pred ccceeecccccccccC------CCCcceEEECCCCeeeec----------------cccccccccEEECCCCCCcccHHH
Confidence 7888888877665432 224566666654433111 112347899999988876555577
Q ss_pred ccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcccc
Q 048180 702 PNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYS 781 (824)
Q Consensus 702 ~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 781 (824)
..+++|+.|+++++ .+...++ ..+..+++|+.|++++| .++.++. ....+|+|++|+++++ .+..+|.
T Consensus 245 ~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 245 LNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp GGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECCSS-CCCEEEC--------SSSCCTTCCEEECCSS-CCCCCGG
T ss_pred cCCCCccEEECCCC-cCCCcCh-hHccccccCCEEECCCC-cCcccCc--------ccCCCCCCCEEECCCC-cceecCc
Confidence 88999999999985 4555533 45678899999999987 4554442 2346889999999998 6778888
Q ss_pred CcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 782 GEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 782 ~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
.+..+++|+.|++++| .+..+| +..+++|+.|++.++
T Consensus 313 ~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCC
Confidence 8888999999999986 578776 667889999998875
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.6e-25 Score=261.91 Aligned_cols=321 Identities=16% Similarity=0.193 Sum_probs=192.3
Q ss_pred CChhhhcCCCCCcEEEecCCCCcc------------------cccccc--CcccccEEecccccccccCC-CcccCCCcc
Q 048180 484 LDNDFFNSFPNLKILNLSDTSMGI------------------LPKSLS--SLKYLTVLLLQNCIYLTCLP-SLAELVELM 542 (824)
Q Consensus 484 ~~~~~~~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~ 542 (824)
+|.. ++++++|++|+|++|.+.. +|..++ ++.+|++|++++|.....+| .++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 5554 5788889999999888877 888888 88999999998887778888 488888999
Q ss_pred EEeccCCC-Cc--ccCcccccC------CCCcEEeccCccccccch-hhhcCCCCCcEEEeecCccc-ccccccc-----
Q 048180 543 VLDVSGSG-IA--EFPDGMNHL------TKLLFLNLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLL-CLPRSLM----- 606 (824)
Q Consensus 543 ~L~l~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~-~~~~~~~----- 606 (824)
+|++++|+ ++ .+|..++++ ++|++|++++|.+..+|. +.++++++|++|++++|.+. .+| ...
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 99998887 77 488888776 888888888888887776 24888888888888888766 433 110
Q ss_pred ------chhhhhchHhhhcCCC-ccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCcc---cc------------
Q 048180 607 ------QEDYAAFIEDVRKLRN-LNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGK---LR------------ 664 (824)
Q Consensus 607 ------~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~------------ 664 (824)
.......+..+..+++ |+.|+++.|.+..+|..+....+.+|+.|.++.+.+.... +.
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 0011123344566666 7777777776666665544334446666666655442210 00
Q ss_pred -ccc--hhhhccCCCCCccCCcCcceeeecccccceee--cc-------ccCCCCCEEEEecCCCccccccchhhh--hc
Q 048180 665 -GNT--LAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM--TI-------PNLQNLKFLEIFNCEGLKYLFKYGVWC--CL 730 (824)
Q Consensus 665 -~~~--~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l-------~~l~~L~~L~L~~c~~l~~l~~~~~l~--~l 730 (824)
... ...+..++...+..+++|++|++++|.-...+ .+ .++++|+.|+|++| .+..+|. .+. .+
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~l 512 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD--DFRATTL 512 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCG--GGSTTTC
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccCh--hhhhccC
Confidence 000 00001111111122345555555554432111 01 11225666666553 3444432 122 56
Q ss_pred cccceeccccccchhhhhcccCCCCCCCcccccccCeEeccC------CcchhccccCcccCCCccEEEecCCCCcCCCC
Q 048180 731 RNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSN------LPELRFMYSGEAQCDFVQTIGIWSCCKLERFP 804 (824)
Q Consensus 731 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~------~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp 804 (824)
++|+.|+|++|. ++.++ ..+..+++|++|++++ +.-...+|..+..+++|++|++++| ++..+|
T Consensus 513 ~~L~~L~Ls~N~-l~~ip--------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip 582 (636)
T 4eco_A 513 PYLVGIDLSYNS-FSKFP--------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVN 582 (636)
T ss_dssp TTCCEEECCSSC-CSSCC--------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCC
T ss_pred CCcCEEECCCCC-CCCcC--------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccC
Confidence 666666666552 32232 2344566677777643 3234455666666777777777665 456666
Q ss_pred ccccccccceeccCCCC
Q 048180 805 ISLWVENYAQKLKSPCS 821 (824)
Q Consensus 805 ~~~~~l~~L~~L~~~~~ 821 (824)
..+. ++|+.|++.++
T Consensus 583 ~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 583 EKIT--PNISVLDIKDN 597 (636)
T ss_dssp SCCC--TTCCEEECCSC
T ss_pred HhHh--CcCCEEECcCC
Confidence 6544 56777776665
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.1e-24 Score=243.40 Aligned_cols=319 Identities=17% Similarity=0.197 Sum_probs=192.6
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
...+++|++.+|.+..++.+..+++|++|++++|. +..+++ +..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred hcCCCEEECCCCccCCchhhhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 34555555555555554445555555555555553 223332 3455555555555555554443 5555555555555
Q ss_pred cccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 525 NCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 525 ~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
+| .+..+|.++++++|++|+++ +.+..++. +.++++|++|++++|.+..++. +.++++|++|++++|.+...
T Consensus 143 ~n-~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--- 214 (466)
T 1o6v_A 143 SN-TISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI--- 214 (466)
T ss_dssp EE-EECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCC---
T ss_pred CC-ccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccccc---
Confidence 54 23344445555555555553 23333322 5556666666666666555432 55666666666666553322
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcC
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWN 684 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 684 (824)
..++.+++|+.|++++|.+..++.+ ..+++|+.|.++.+.+... + +...+++
T Consensus 215 ----------~~~~~l~~L~~L~l~~n~l~~~~~l---~~l~~L~~L~l~~n~l~~~-------------~--~~~~l~~ 266 (466)
T 1o6v_A 215 ----------TPLGILTNLDELSLNGNQLKDIGTL---ASLTNLTDLDLANNQISNL-------------A--PLSGLTK 266 (466)
T ss_dssp ----------GGGGGCTTCCEEECCSSCCCCCGGG---GGCTTCSEEECCSSCCCCC-------------G--GGTTCTT
T ss_pred ----------ccccccCCCCEEECCCCCcccchhh---hcCCCCCEEECCCCccccc-------------h--hhhcCCC
Confidence 1245566677777766666554322 2445666666654433111 0 1234678
Q ss_pred cceeeecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccc
Q 048180 685 TSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRS 764 (824)
Q Consensus 685 L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~ 764 (824)
|++|++++|.......+..+++|+.|++++| .+..+++ +..+++|+.|++++| .+..++ ....+++
T Consensus 267 L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~---------~~~~l~~ 332 (466)
T 1o6v_A 267 LTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDIS---------PVSSLTK 332 (466)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCG---------GGGGCTT
T ss_pred CCEEECCCCccCccccccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCch---------hhccCcc
Confidence 8888888876554445778888999999885 4555544 567899999999888 344333 2457899
Q ss_pred cCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 765 LRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 765 L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
|++|++++| .+..++ .+..+++|+.|++++| ++..++. +..+++|+.|++.+|
T Consensus 333 L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 333 LQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp CCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE
T ss_pred CCEeECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCC
Confidence 999999998 566663 5778999999999987 4666555 788999999998876
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=4.2e-24 Score=240.87 Aligned_cols=143 Identities=26% Similarity=0.345 Sum_probs=65.3
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEeccc
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 525 (824)
..+++|.+.+|.+..++.+..+++|++|++++|. +..++. +..+++|++|++++|.+..+|. ++.+.+|++|++++
T Consensus 90 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN 165 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE
T ss_pred ccCCEEECCCCccccChhhcCCCCCCEEECCCCC-CCCChH--HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC
Confidence 3444555554444444444444555555554443 223332 3444555555555554444432 44445555555432
Q ss_pred ccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 526 CIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 526 c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
.+..++.++++++|++|++++|.+..++ .+.++++|++|++++|.+...++ ++.+++|++|++++|.
T Consensus 166 --~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 166 --QVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232 (466)
T ss_dssp --SCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred --cccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence 2223333444555555555555444443 24444555555555544444432 3444555555554444
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=6.2e-25 Score=256.83 Aligned_cols=359 Identities=13% Similarity=0.118 Sum_probs=240.6
Q ss_pred cceeecc-ccCCCccEEEeccCCCcC------------------CCC-cc--CCCCccEEEcCCCCCcccCChhhhcCCC
Q 048180 436 LRKFVYE-DWSGDVERVSLMGNNLRE------------------LRT-CP--MFCKLTTLFLQGNPLDLQLDNDFFNSFP 493 (824)
Q Consensus 436 ~~~~~~~-~~~~~~~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 493 (824)
+..+|.. .....++.|++.+|.+.. +|. +. ++++|++|++++|.....+|.. +.+++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~ 273 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALP 273 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCS
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCC
Confidence 3345543 335678888888888877 666 55 7888888888888777777755 57888
Q ss_pred CCcEEEecCCC-Cc--cccccccCc------ccccEEecccccccccCCC---cccCCCccEEeccCCCCc-ccCccccc
Q 048180 494 NLKILNLSDTS-MG--ILPKSLSSL------KYLTVLLLQNCIYLTCLPS---LAELVELMVLDVSGSGIA-EFPDGMNH 560 (824)
Q Consensus 494 ~Lr~L~L~~~~-~~--~lp~~i~~l------~~L~~L~L~~c~~~~~lp~---i~~L~~L~~L~l~~~~l~-~lp~~i~~ 560 (824)
+|++|+|++|. +. .+|..++.+ .+|++|++++|. ++.+|. ++++++|++|++++|.+. .+| .+++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 88888888887 75 478777776 888888888864 447775 788888888888888888 788 7788
Q ss_pred CCCCcEEeccCccccccchhhhcCCCC-CcEEEeecCccccccccccchh--------------hhhchHhhh-------
Q 048180 561 LTKLLFLNLSRTRVRNFPLHLVTSLHN-LQEFSMIGCDLLCLPRSLMQED--------------YAAFIEDVR------- 618 (824)
Q Consensus 561 L~~L~~L~l~~~~~~~~~~~~l~~L~~-L~~L~l~~~~l~~~~~~~~~~~--------------~~~~~~~l~------- 618 (824)
+++|++|++++|.+..+|.. ++++++ |++|++++|.+..+|....... ....+..+.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 88888888888887777655 777887 8888888887665543221000 000112233
Q ss_pred cCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccC-------CcCcceeeec
Q 048180 619 KLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWL-------PWNTSELLLV 691 (824)
Q Consensus 619 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~L~~L~l~ 691 (824)
.+.+|+.|++++|.+..++.... ..+++|+.|.++.+.+. .++...... +++|++|+++
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~-~~l~~L~~L~Ls~N~l~-------------~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELF-STGSPLSSINLMGNMLT-------------EIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHH-HTTCCCSEEECCSSCCS-------------BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHH-ccCCCCCEEECCCCCCC-------------CcCHHHhccccccccccCCccEEECc
Confidence 44566666776666665544331 22456666666554432 122222111 2389999999
Q ss_pred ccccceee-ccc--cCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeE
Q 048180 692 HCNAVTQM-TIP--NLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKL 768 (824)
Q Consensus 692 ~~~~~~~~-~l~--~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L 768 (824)
+|.-...+ .+. .+++|+.|+|++| .+..+|. .+..+++|+.|+|++|..+..- ...+..+..+..+++|++|
T Consensus 497 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N--~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 497 FNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGN--RTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp SSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCC--BCCCCCCTTGGGCSSCCEE
T ss_pred CCcCCccChhhhhccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccC--cccccChHHHhcCCCCCEE
Confidence 98755332 344 8999999999995 5666643 4678999999999765421100 0012234466789999999
Q ss_pred eccCCcchhccccCcccCCCccEEEecCCCCcCCCCc---------cccccccceeccCCCC
Q 048180 769 ILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPI---------SLWVENYAQKLKSPCS 821 (824)
Q Consensus 769 ~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~---------~~~~l~~L~~L~~~~~ 821 (824)
+|+++. +..+|..+. ++|+.|++++|+ +..++. ....+...+..++.+|
T Consensus 572 ~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C 629 (636)
T 4eco_A 572 QIGSND-IRKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629 (636)
T ss_dssp ECCSSC-CCBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESC
T ss_pred ECCCCc-CCccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCC
Confidence 999994 688988755 899999999974 444432 1223344566678888
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=245.87 Aligned_cols=382 Identities=15% Similarity=0.057 Sum_probs=207.2
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|.. ....+++|++++|.+..++. +..+++|++|++++|. +..+++..|..+++|++|+|++|.+.
T Consensus 5 l~ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 5 VDRSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp EECTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred EecCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee
Confidence 44455566666653 34788888888888877763 7788888888888886 44554455688888888888888888
Q ss_pred cccccccCcccccEEecccccccc-cCC-CcccCCCccEEeccCCCCcccCcccccCCCC--cEEeccCccc--cccchh
Q 048180 507 ILPKSLSSLKYLTVLLLQNCIYLT-CLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKL--LFLNLSRTRV--RNFPLH 580 (824)
Q Consensus 507 ~lp~~i~~l~~L~~L~L~~c~~~~-~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~~~ 580 (824)
.+|.. .+.+|++|++++|.... .+| .++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....+.
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccc
Confidence 88776 78888888888865433 355 48888888888888887765 345666666 7777777665 222222
Q ss_pred hhcC--------------------------CCCCcEEEeecCc-------ccccccc----------------ccchhhh
Q 048180 581 LVTS--------------------------LHNLQEFSMIGCD-------LLCLPRS----------------LMQEDYA 611 (824)
Q Consensus 581 ~l~~--------------------------L~~L~~L~l~~~~-------l~~~~~~----------------~~~~~~~ 611 (824)
.+.. +++|+.|++++|. +...... .......
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 2222 3344444444332 0000000 0000000
Q ss_pred hchHhhhcCCCccEEEEEecCcc-chhhhhhh---hhcccceeEEEEeccCCCc-----------cccccchhhhccCCC
Q 048180 612 AFIEDVRKLRNLNVFDFTFVSLQ-SFKEYISS---QHWLWLQSYKFSVGALGKG-----------KLRGNTLAFMKEFPN 676 (824)
Q Consensus 612 ~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~---~~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~~~~l~~ 676 (824)
.... ....++|+.|+++.|.+. .+|..+.. ..++.|+.+.+..+.+... .+........ .+..
T Consensus 239 ~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n-~l~~ 316 (520)
T 2z7x_B 239 RILQ-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-RMVH 316 (520)
T ss_dssp HHHH-HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS-CCCC
T ss_pred HHHH-HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC-cccc
Confidence 0000 011235666666666554 33322200 2233444444443332000 0000000000 0000
Q ss_pred CC-ccCCcCcceeeecccccce--eeccccCCCCCEEEEecCCCcccccc-chhhhhccccceeccccccchhhhhcccC
Q 048180 677 DP-IWLPWNTSELLLVHCNAVT--QMTIPNLQNLKFLEIFNCEGLKYLFK-YGVWCCLRNLEELVIANCRNLEKVIEQDD 752 (824)
Q Consensus 677 ~~-~~~~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~L~~c~~l~~l~~-~~~l~~l~~L~~L~l~~~~~l~~i~~~~~ 752 (824)
.. ...+++|++|++++|.-.. ...+..+++|+.|++++| .+..++. ...+..+++|+.|++++|.-...++....
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 00 1234555555555554322 113444555555555553 2232211 11234455555555554422111331100
Q ss_pred C-------------CC-CCCcccc-cccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCcc-ccccccceec
Q 048180 753 D-------------EN-SNPQVCW-RSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPIS-LWVENYAQKL 816 (824)
Q Consensus 753 ~-------------~~-~~~~~~~-p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~-~~~l~~L~~L 816 (824)
. .. ......+ ++|++|++++| .+..+|..+..+++|++|++++| +++.+|.. +..+++|+.|
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence 0 00 0000122 68888888888 67788887778999999999886 78889886 7788999999
Q ss_pred cCCCC
Q 048180 817 KSPCS 821 (824)
Q Consensus 817 ~~~~~ 821 (824)
++.++
T Consensus 474 ~l~~N 478 (520)
T 2z7x_B 474 WLHTN 478 (520)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 88876
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=253.24 Aligned_cols=304 Identities=16% Similarity=0.168 Sum_probs=233.8
Q ss_pred cCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC-C-cccCCCc
Q 048180 465 PMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP-S-LAELVEL 541 (824)
Q Consensus 465 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L 541 (824)
..+++++.|++.+|. +..+|..++..+++|++|+|++|.+..+|. .++.+.+|++|+|++|. ++.+| . ++++++|
T Consensus 48 l~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCC
Confidence 346788888888875 677888888889999999999998877765 78889999999999875 44444 4 7889999
Q ss_pred cEEeccCCCCcccCccc-ccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcC
Q 048180 542 MVLDVSGSGIAEFPDGM-NHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKL 620 (824)
Q Consensus 542 ~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L 620 (824)
++|++++|.++.+|..+ +++++|++|++++|.+..+++..++++++|++|++++|.+..+ .++.+
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~l 191 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------------DLSLI 191 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--------------CGGGC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--------------Chhhh
Confidence 99999999888888764 7889999999999988888777788899999999988875543 24567
Q ss_pred CCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceeec
Q 048180 621 RNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMT 700 (824)
Q Consensus 621 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~ 700 (824)
++|+.|++++|.+..++ ....|+.|.++.+.+... +...+++|+.|++.+|......+
T Consensus 192 ~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~----------------~~~~~~~L~~L~L~~n~l~~~~~ 249 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVV----------------RGPVNVELTILKLQHNNLTDTAW 249 (597)
T ss_dssp TTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEE----------------ECSCCSCCCEEECCSSCCCCCGG
T ss_pred hhhhhhhcccCcccccc------CCchhheeeccCCccccc----------------ccccCCCCCEEECCCCCCCCChh
Confidence 78888888888766542 224677776665443111 11234689999999887655557
Q ss_pred cccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccc
Q 048180 701 IPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMY 780 (824)
Q Consensus 701 l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 780 (824)
+..+++|+.|+|++| .+...++ ..++.+++|+.|+|++| .+..++. ....+|+|+.|+|++| .+..+|
T Consensus 250 l~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~ 317 (597)
T 3oja_B 250 LLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHN-HLLHVE 317 (597)
T ss_dssp GGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECTTS-CCCEEEC--------SSSCCTTCCEEECCSS-CCCCCG
T ss_pred hccCCCCCEEECCCC-ccCCCCH-HHhcCccCCCEEECCCC-CCCCCCc--------ccccCCCCcEEECCCC-CCCccC
Confidence 888999999999985 4555533 35778999999999987 4554542 3346899999999998 577888
Q ss_pred cCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 781 SGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 781 ~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
..+..+++|+.|++++| ++..+| +..+++|+.|++.++
T Consensus 318 ~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred cccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCC
Confidence 88888999999999986 577776 567889999998775
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.3e-24 Score=260.01 Aligned_cols=349 Identities=15% Similarity=0.155 Sum_probs=212.5
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc-cccccccCcccccEEecc
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG-ILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~ 524 (824)
..++++++.+|.+........+++|++|++++|.....+|. +..+++|++|++++|.+. .+|..++.+++|++|+++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 45677777777666555556677777777777765444444 567777777777777764 556667777777777777
Q ss_pred cccccccCCCcccCCCccEEeccCCCCc-ccCcccccC-CCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc-cc
Q 048180 525 NCIYLTCLPSLAELVELMVLDVSGSGIA-EFPDGMNHL-TKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL-CL 601 (824)
Q Consensus 525 ~c~~~~~lp~i~~L~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~-~~ 601 (824)
+|.....+|.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|.+....+..++++++|++|++++|.+. .+
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 76555555544 6777777777777666 666666654 77777777777765444444677777777777776543 11
Q ss_pred cccccchhhhhchHhhhcCCCccEEEEEecCcc-chhhhhhhhhcc-cceeEEEEeccCCCccccccc---hhhh-----
Q 048180 602 PRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ-SFKEYISSQHWL-WLQSYKFSVGALGKGKLRGNT---LAFM----- 671 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~---~~~~----- 671 (824)
+ ...++.+++|+.|+++.|.+. ..+..+ ..+. +|+.|.++.+.+......... ...+
T Consensus 335 p-----------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 335 P-----------MDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp C-----------HHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred C-----------HHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 1 123666677777777766654 333333 1222 556655544332110000000 0000
Q ss_pred -----c-cCCCCCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccc
Q 048180 672 -----K-EFPNDPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRN 743 (824)
Q Consensus 672 -----~-~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 743 (824)
. .++ .....+++|++|++++|...... .+..+++|+.|++++|.-...+| ..+..+++|+.|++++|.-
T Consensus 402 ~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 402 QNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDL 478 (768)
T ss_dssp CSSEEEEECC-GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCC
T ss_pred CCCccccccC-HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEecCCcc
Confidence 0 001 01223456666666665432221 45566667777776653322332 2355667777777776633
Q ss_pred hhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 744 LEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 744 l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
...+ +..+..+++|++|++++|.-...+|..++.+++|++|++++|.-...+|..+..+++|+.|++.+|
T Consensus 479 ~~~~--------p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 479 TGEI--------PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred cCcC--------CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 2222 224557888999999988655577888888999999999988655578888889999999988876
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.4e-23 Score=227.14 Aligned_cols=292 Identities=18% Similarity=0.219 Sum_probs=232.9
Q ss_pred CcccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccc
Q 048180 433 GRRLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSL 512 (824)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i 512 (824)
+..+..++.-.....++++++.+|.+..++.+..+++|++|++++|. +..++. +..+++|++|++++|.+..+|. +
T Consensus 53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~ 128 (347)
T 4fmz_A 53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNEDNISDISP-L 128 (347)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECTTSCCCCCGG-G
T ss_pred CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCc-ccCchH--HcCCCcCCEEECcCCcccCchh-h
Confidence 33444444334567899999999999998889999999999999996 555653 7899999999999999988887 8
Q ss_pred cCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEE
Q 048180 513 SSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFS 592 (824)
Q Consensus 513 ~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~ 592 (824)
..+++|++|++++|.....++.+.++++|++|++++|.+..++. +..+++|++|++++|.+..+++ +..+++|+.|+
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceee
Confidence 99999999999999888888889999999999999999998876 8899999999999999988865 88999999999
Q ss_pred eecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhc
Q 048180 593 MIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMK 672 (824)
Q Consensus 593 l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 672 (824)
+++|.+... ..+..+++|+.|++++|.+...+. +
T Consensus 206 l~~n~l~~~-------------~~~~~~~~L~~L~l~~n~l~~~~~-~-------------------------------- 239 (347)
T 4fmz_A 206 AYVNQITDI-------------TPVANMTRLNSLKIGNNKITDLSP-L-------------------------------- 239 (347)
T ss_dssp CCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG-G--------------------------------
T ss_pred cccCCCCCC-------------chhhcCCcCCEEEccCCccCCCcc-h--------------------------------
Confidence 999875543 127788999999999988765443 1
Q ss_pred cCCCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccC
Q 048180 673 EFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDD 752 (824)
Q Consensus 673 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~ 752 (824)
..+++|++|++++|.......+..+++|+.|++++| .+..++ .+..+++|+.|++++|.-....+.
T Consensus 240 -------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~--- 305 (347)
T 4fmz_A 240 -------ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQLGNEDME--- 305 (347)
T ss_dssp -------TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCGGGHH---
T ss_pred -------hcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCcCCCcChh---
Confidence 234567777777765433335677889999999886 555553 367789999999998853322221
Q ss_pred CCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCC
Q 048180 753 DENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCC 798 (824)
Q Consensus 753 ~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~ 798 (824)
.+..+|+|++|++++|+ +..++. +..+++|++|++++|+
T Consensus 306 -----~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 306 -----VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -----HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred -----HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 23468899999999995 666655 7789999999999874
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.4e-23 Score=245.24 Aligned_cols=353 Identities=17% Similarity=0.124 Sum_probs=219.3
Q ss_pred ccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEecccc
Q 048180 448 VERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c 526 (824)
-++++..++.+..+|... .+++++|++++|. +..+++..|.++++|++|+|++|.+..+ |..++++.+|++|+|++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 357888888888888722 2789999999997 5666666689999999999999999887 457899999999999997
Q ss_pred cccccCC-CcccCCCccEEeccCCCCcccC-cccccCCCCcEEeccCccccc--cchhhhcCCCCCcEEEeecCcccccc
Q 048180 527 IYLTCLP-SLAELVELMVLDVSGSGIAEFP-DGMNHLTKLLFLNLSRTRVRN--FPLHLVTSLHNLQEFSMIGCDLLCLP 602 (824)
Q Consensus 527 ~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~--~~~~~l~~L~~L~~L~l~~~~l~~~~ 602 (824)
......| .++++++|++|++++|.+..+| ..++++++|++|++++|.+.. +|. .++++++|++|++++|.+...+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEEC
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceecC
Confidence 6444446 4999999999999999999877 679999999999999999864 554 4999999999999999876653
Q ss_pred ccccchhhhhchHhhhcCC------------------------CccEEEEEecCccc--hhhhhhhhhcccceeEEEEec
Q 048180 603 RSLMQEDYAAFIEDVRKLR------------------------NLNVFDFTFVSLQS--FKEYISSQHWLWLQSYKFSVG 656 (824)
Q Consensus 603 ~~~~~~~~~~~~~~l~~L~------------------------~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 656 (824)
... +..+..++ +|+.|++++|.+.. .+..+ ..+..|+.+.+...
T Consensus 170 ~~~--------~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 170 VND--------LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL--QNLAGLHVHRLILG 239 (606)
T ss_dssp TTT--------THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHH--HTTTTCEEEEEEEE
T ss_pred hhh--------hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHh--cccccccccccccc
Confidence 221 22223222 45555555554331 11111 23344444444333
Q ss_pred cCCCcc-ccc---cchh-------------hh----ccCCCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecC
Q 048180 657 ALGKGK-LRG---NTLA-------------FM----KEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNC 715 (824)
Q Consensus 657 ~~~~~~-~~~---~~~~-------------~~----~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c 715 (824)
...... +.. .... .. ...+. ...+++|+.|++.++.......++.+++|+.|++++|
T Consensus 240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317 (606)
T ss_dssp CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESC
T ss_pred ccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhhhccccccCCEEEcccc
Confidence 221100 000 0000 00 00000 2233455555555554333224445555555555554
Q ss_pred CCccccccchhhhhccccceeccccccchhhhhcccC----------------CCCCCCcccccccCeEeccCCcchhcc
Q 048180 716 EGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDD----------------DENSNPQVCWRSLRKLILSNLPELRFM 779 (824)
Q Consensus 716 ~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~----------------~~~~~~~~~~p~L~~L~l~~~~~L~~~ 779 (824)
.- ..+|. + .+++|+.|++++|..+..+..... ...+.....+++|++|+++++. +..+
T Consensus 318 ~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 391 (606)
T 3vq2_A 318 QL-KQFPT---L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM 391 (606)
T ss_dssp CC-SSCCC---C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEE
T ss_pred cC-ccccc---C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccc
Confidence 32 44431 1 344444444444422221100000 0001123456777888887773 6667
Q ss_pred ccCcccCCCccEEEecCCCCcCCCC-ccccccccceeccCCCC
Q 048180 780 YSGEAQCDFVQTIGIWSCCKLERFP-ISLWVENYAQKLKSPCS 821 (824)
Q Consensus 780 ~~~~~~lpsL~~L~i~~C~~L~~lp-~~~~~l~~L~~L~~~~~ 821 (824)
|..+..+++|+.|++++|.-....| ..+..+++|+.|++.+|
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 7777778888888888864333334 35778888888888776
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.2e-23 Score=242.81 Aligned_cols=191 Identities=19% Similarity=0.234 Sum_probs=144.4
Q ss_pred CCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc
Q 048180 432 PGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP 509 (824)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp 509 (824)
.+..+..+|. .....+++|++++|.+..++. +..+++|++|++++|. +..+++..|..+++|++|+|++|.+..+|
T Consensus 13 ~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 13 RSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccC
Confidence 3455666776 345789999999998887643 7889999999999986 45566556788999999999999988777
Q ss_pred cc-ccCcccccEEecccccccc-cCC-CcccCCCccEEeccCCC-CcccC-cccccCCCCcEEeccCccccccchhhhcC
Q 048180 510 KS-LSSLKYLTVLLLQNCIYLT-CLP-SLAELVELMVLDVSGSG-IAEFP-DGMNHLTKLLFLNLSRTRVRNFPLHLVTS 584 (824)
Q Consensus 510 ~~-i~~l~~L~~L~L~~c~~~~-~lp-~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~l~~ 584 (824)
.. ++.+.+|++|++++|.... ..| .++++++|++|++++|. +..+| ..+.++++|++|++++|.+....+..+++
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 65 8899999999999875332 334 48899999999999986 67776 46888999999999998887665566888
Q ss_pred CCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccc
Q 048180 585 LHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS 635 (824)
Q Consensus 585 L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 635 (824)
+++|++|++..|.+...+ ...++.+++|+.|+++.|.+..
T Consensus 171 l~~L~~L~l~~n~~~~~~-----------~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLL-----------EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CSEEEEEEEECSBSTTHH-----------HHHHHSTTTBSEEEEESCBCTT
T ss_pred cccCceEecccCcccccc-----------hhhHhhcccccEEEccCCcccc
Confidence 888888888877633221 1123457777777777776654
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.7e-24 Score=257.37 Aligned_cols=342 Identities=16% Similarity=0.094 Sum_probs=189.3
Q ss_pred CCccEEEeccCCCcC-CCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc-cccccccCcc-cccEE
Q 048180 446 GDVERVSLMGNNLRE-LRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG-ILPKSLSSLK-YLTVL 521 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~-~L~~L 521 (824)
..+++|++.+|.+.. +|. +..+++|++|++++|...+.+|...+..+++|++|++++|.+. .+|..+..+. +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 455666666655542 222 5556666666666665444555554556666666666666653 5555555555 56666
Q ss_pred ecccccccccCC-Cccc--CCCccEEeccCCCCc-ccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 522 LLQNCIYLTCLP-SLAE--LVELMVLDVSGSGIA-EFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 522 ~L~~c~~~~~lp-~i~~--L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
++++|.....+| .+.. +++|++|++++|.+. .+|..++++++|++|++++|.+....+..++++++|+.|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 666654444444 2443 556666666666555 556666666666666666666643333446666666666666665
Q ss_pred cccccccccchhhhhchHhhhcCCCccEEEEEecCcc-chhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCC
Q 048180 598 LLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ-SFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPN 676 (824)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 676 (824)
+... .+..+..+++|+.|+++.|.+. ..+..+ ..+++|+.|.++.+.+... +|.
T Consensus 454 l~~~-----------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~------------~p~ 508 (768)
T 3rgz_A 454 LEGE-----------IPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGE------------IPK 508 (768)
T ss_dssp CCSC-----------CCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSC------------CCG
T ss_pred ccCc-----------CCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCc------------CCh
Confidence 4321 1334556666666666666655 233332 3345566666554433110 011
Q ss_pred CCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccc------------------------------
Q 048180 677 DPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKY------------------------------ 724 (824)
Q Consensus 677 ~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~------------------------------ 724 (824)
....+++|++|++++|...... .+..+++|+.|++++|+-...+|..
T Consensus 509 -~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 509 -WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp -GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred -HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 1123456666666666544332 4556666677766665322222210
Q ss_pred --------------------------------------hhhhhccccceeccccccchhhhhcccCCCCCCCcccccccC
Q 048180 725 --------------------------------------GVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLR 766 (824)
Q Consensus 725 --------------------------------------~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~ 766 (824)
..++.+++|+.|+++++.--..+| ..++.+++|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--------~~l~~l~~L~ 659 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--------KEIGSMPYLF 659 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--------GGGGGCTTCC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC--------HHHhccccCC
Confidence 012224555666666553222222 2445667777
Q ss_pred eEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 767 KLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 767 ~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
.|+|+++.--..+|..++.+++|+.|++++|.--..+|..+.++++|+.|++..+
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 7777777444466777777777777777775433467777777777777777665
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.1e-23 Score=242.96 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=142.4
Q ss_pred cCCcccceeecc--ccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 431 KPGRRLRKFVYE--DWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 431 ~~~~~~~~~~~~--~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
..+..+..++.. .....+++|++.+|.+..++. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCccc
Confidence 344444544332 345689999999999988764 8899999999999996 66777777899999999999999987
Q ss_pred c--ccccccCcccccEEecccccccccCC--CcccCCCccEEeccCCCCc-ccCcccccCCCCcEEeccCccccccchhh
Q 048180 507 I--LPKSLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGSGIA-EFPDGMNHLTKLLFLNLSRTRVRNFPLHL 581 (824)
Q Consensus 507 ~--lp~~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~ 581 (824)
. .|..++++.+|++|++++|..++.+| .++++++|++|++++|.++ ..|..++++++|++|+++++.+..+|...
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 191 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHH
T ss_pred ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhh
Confidence 4 46789999999999999987777777 4999999999999999988 47888999999999999999887777665
Q ss_pred hcCCCCCcEEEeecCccccc
Q 048180 582 VTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 582 l~~L~~L~~L~l~~~~l~~~ 601 (824)
++.+++|++|++++|.+...
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 192 ADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp HHSTTTBSEEEEESCBCTTC
T ss_pred HhhcccccEEEccCCccccc
Confidence 67899999999999887653
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.6e-23 Score=232.64 Aligned_cols=173 Identities=22% Similarity=0.324 Sum_probs=105.0
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEeccccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCI 527 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~ 527 (824)
+.+...++.+..+|.. -.+++++|++++|. +..+++..|..+++|++|+|++|.+..+ |..+.++.+|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 3445555555555541 12466667776664 4444444456677777777777766555 456667777777777664
Q ss_pred ccccCC-C-cccCCCccEEeccCCCCccc-CcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 528 YLTCLP-S-LAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 528 ~~~~lp-~-i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
.++.+| . ++++++|++|++++|.+..+ |..+.++++|++|++++|.+..+++..+.++++|++|++++|.+..++
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-- 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC--
Confidence 345555 2 56677777777777766644 345666777777777777666665555666777777777766654432
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccc
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS 635 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 635 (824)
...+..+++|+.|++..|.+..
T Consensus 169 ---------~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 169 ---------TEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp ---------HHHHTTCTTCCEEEEESCCCCE
T ss_pred ---------hhHhcccCCCcEEeCCCCcCcE
Confidence 2235666667777766665543
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=242.70 Aligned_cols=362 Identities=19% Similarity=0.187 Sum_probs=223.3
Q ss_pred ecCCcccceeecc--ccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCC
Q 048180 430 FKPGRRLRKFVYE--DWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSM 505 (824)
Q Consensus 430 ~~~~~~~~~~~~~--~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 505 (824)
...+..+..++.. .....+++|++.+|.+..++. +.++++|++|++++|. +..+++..|..+++|++|++++|.+
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccccc
Confidence 3344445555433 335689999999999888764 7889999999999996 5666666689999999999999999
Q ss_pred ccccc-cccCcccccEEecccccccc-cCC-CcccCCCccEEeccCCCCcccC-cccccCCCC----cEEeccCcccccc
Q 048180 506 GILPK-SLSSLKYLTVLLLQNCIYLT-CLP-SLAELVELMVLDVSGSGIAEFP-DGMNHLTKL----LFLNLSRTRVRNF 577 (824)
Q Consensus 506 ~~lp~-~i~~l~~L~~L~L~~c~~~~-~lp-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L----~~L~l~~~~~~~~ 577 (824)
..+|. .++.+.+|++|++++|.... .+| .++++++|++|++++|.++.++ ..++.+++| +.|++++|.+..+
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 88876 68999999999999975433 467 4999999999999999988664 456777777 7777777766554
Q ss_pred chhh----------------------------------------------------------------------------
Q 048180 578 PLHL---------------------------------------------------------------------------- 581 (824)
Q Consensus 578 ~~~~---------------------------------------------------------------------------- 581 (824)
+++.
T Consensus 193 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 272 (570)
T 2z63_A 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272 (570)
T ss_dssp CTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred CHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh
Confidence 4332
Q ss_pred -----hcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEec
Q 048180 582 -----VTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVG 656 (824)
Q Consensus 582 -----l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 656 (824)
++.+++|++|++++|.+..++ ..+..+ +|+.|+++.|.+..++. ..+++|+.+.+..+
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~------------~~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n 335 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVK------------DFSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSN 335 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCC------------BCCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEEESC
T ss_pred hchhhhcCcCcccEEEecCccchhhh------------hhhccC-CccEEeeccCcccccCc----ccccccCEEeCcCC
Confidence 233455555555555443332 223445 67777777776664443 23345555555433
Q ss_pred cCCCccccccchhhhccC-------C-----CCCccCCcCcceeeecccccceee-------------------------
Q 048180 657 ALGKGKLRGNTLAFMKEF-------P-----NDPIWLPWNTSELLLVHCNAVTQM------------------------- 699 (824)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l-------~-----~~~~~~~~~L~~L~l~~~~~~~~~------------------------- 699 (824)
........ .....++.+ . .......++|++|++++|......
T Consensus 336 ~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 336 KGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp BSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS
T ss_pred cccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch
Confidence 22110000 000000000 0 000112344555555444322111
Q ss_pred -ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhc
Q 048180 700 -TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRF 778 (824)
Q Consensus 700 -~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 778 (824)
.+.++++|+.|++++|. +...+ ...+..+++|+.|++++|.-... ..+..+..+++|++|++++|. +..
T Consensus 415 ~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-------~~p~~~~~l~~L~~L~l~~n~-l~~ 484 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNSFQEN-------FLPDIFTELRNLTFLDLSQCQ-LEQ 484 (570)
T ss_dssp CTTTTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSC-CCE
T ss_pred hhhhcCCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCCcCccc-------cchhhhhcccCCCEEECCCCc-ccc
Confidence 23445555555555542 22221 12344566666666666632210 112245567888888888874 444
Q ss_pred c-ccCcccCCCccEEEecCCCCcCCCCc-cccccccceeccCCCC
Q 048180 779 M-YSGEAQCDFVQTIGIWSCCKLERFPI-SLWVENYAQKLKSPCS 821 (824)
Q Consensus 779 ~-~~~~~~lpsL~~L~i~~C~~L~~lp~-~~~~l~~L~~L~~~~~ 821 (824)
+ |..+..+++|++|++++| ++..+|. .+.++++|+.|++.++
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 4 667778888888888886 6777665 3678888888888775
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=7.5e-23 Score=239.06 Aligned_cols=354 Identities=17% Similarity=0.132 Sum_probs=216.5
Q ss_pred CCCccEEEeccCCCcCC--CCccCCCCccEEEcCCCCCcccCChhhhcCCCCCc--EEEecCCCCccccccccCcc----
Q 048180 445 SGDVERVSLMGNNLREL--RTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLK--ILNLSDTSMGILPKSLSSLK---- 516 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr--~L~L~~~~~~~lp~~i~~l~---- 516 (824)
...+++|++.+|.+..+ +.+..+++|++|++++|. +..+++..+..+++|+ .|++++|.+..++.......
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence 34677777777777665 445557777777777775 4455555567777777 77777777655544322222
Q ss_pred ------------------------------------------------cccEEecccccccccCC-C-cccCCCccEEec
Q 048180 517 ------------------------------------------------YLTVLLLQNCIYLTCLP-S-LAELVELMVLDV 546 (824)
Q Consensus 517 ------------------------------------------------~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l 546 (824)
+|++|++++| .++.+| . ++++++|++|++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEEC
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEec
Confidence 4556666654 344444 3 788888999999
Q ss_pred cCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccc-ccccccchhhhhchHhhhcCCCccE
Q 048180 547 SGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC-LPRSLMQEDYAAFIEDVRKLRNLNV 625 (824)
Q Consensus 547 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~l~~L~~L~~ 625 (824)
++|.++.+|..+.++++|++|++++|.+..+++..++++++|++|++++|.+.. ++ ...+..+++|+.
T Consensus 286 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------~~~~~~l~~L~~ 354 (606)
T 3t6q_A 286 TATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-----------TGCLENLENLRE 354 (606)
T ss_dssp TTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC-----------SSTTTTCTTCCE
T ss_pred cCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc-----------hhhhhccCcCCE
Confidence 988888888888888899999998888877766668888888888888886442 11 123566777777
Q ss_pred EEEEecCccchhh-hhhhhhcccceeEEEEeccCCCccccc-cchhhhc----------c-CCCCCccCCcCcceeeecc
Q 048180 626 FDFTFVSLQSFKE-YISSQHWLWLQSYKFSVGALGKGKLRG-NTLAFMK----------E-FPNDPIWLPWNTSELLLVH 692 (824)
Q Consensus 626 L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~----------~-l~~~~~~~~~~L~~L~l~~ 692 (824)
|+++.|.+..... ......+++|+.|.++.+.+....... .....++ . .+......+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 7777777665431 111234566777766554331110000 0000000 0 0111133456667777766
Q ss_pred cccceee--ccccCCCCCEEEEecCCCccc-cccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEe
Q 048180 693 CNAVTQM--TIPNLQNLKFLEIFNCEGLKY-LFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLI 769 (824)
Q Consensus 693 ~~~~~~~--~l~~l~~L~~L~L~~c~~l~~-l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~ 769 (824)
|...... .+..+++|+.|++++|.--.. ++....+..+++|+.|++++| .++.++ +..+..+++|++|+
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-------~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID-------QHAFTSLKMMNHVD 506 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC-------TTTTTTCTTCCEEE
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccC-------hhhhccccCCCEEE
Confidence 6533222 355667777777766532221 122234566777777777766 333332 12345677888888
Q ss_pred ccCCcchhccccCcccCCCccEEEecCCCCcCCCCc-cccccccceeccCCCC
Q 048180 770 LSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPI-SLWVENYAQKLKSPCS 821 (824)
Q Consensus 770 l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~-~~~~l~~L~~L~~~~~ 821 (824)
++++.-....|..+..+++| .|++++| ++..+|. .+..+++|+.|++.++
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCC
Confidence 88874334445667777888 8888876 4555544 4677888888888775
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.3e-23 Score=233.97 Aligned_cols=360 Identities=17% Similarity=0.131 Sum_probs=237.4
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEeccccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCI 527 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~ 527 (824)
++++++++.+..+|.... ++|++|++++|. +..+++..|..+++|++|+|++|.+..+ |..++.+.+|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence 678999999999887222 899999999996 5667766789999999999999999877 678999999999999996
Q ss_pred ccccCCCcccCCCccEEeccCCCCcc--cCcccccCCCCcEEeccCccccccchhhhcCCCCC--cEEEeecCcc--ccc
Q 048180 528 YLTCLPSLAELVELMVLDVSGSGIAE--FPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNL--QEFSMIGCDL--LCL 601 (824)
Q Consensus 528 ~~~~lp~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L--~~L~l~~~~l--~~~ 601 (824)
.++.+|.. .+++|++|++++|.++. +|..++++++|++|++++|.+... .++.+++| ++|++++|.+ ...
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccccc
Confidence 56788865 89999999999999985 678999999999999999988653 36778888 9999999876 221
Q ss_pred -cccccc--------------------------------------------hhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 602 -PRSLMQ--------------------------------------------EDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 602 -~~~~~~--------------------------------------------~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
+..... ......+..++.+++|+.|++..+.+...
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 111100 00111223456666777777766655421
Q ss_pred --hhhhhhhhcccceeEEEEeccCCCc-cccc-----cchhhhccC--CCCCccCC----------cCcceeeecccccc
Q 048180 637 --KEYISSQHWLWLQSYKFSVGALGKG-KLRG-----NTLAFMKEF--PNDPIWLP----------WNTSELLLVHCNAV 696 (824)
Q Consensus 637 --~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-----~~~~~~~~l--~~~~~~~~----------~~L~~L~l~~~~~~ 696 (824)
..........+|+.|.++.+.+... .... .....++.+ .......+ .+|+.|.+.+|...
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccc
Confidence 1122222235788888876654211 0000 000000000 00000111 45888888877643
Q ss_pred eeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchh---hhhcccC------------CC----CCC
Q 048180 697 TQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLE---KVIEQDD------------DE----NSN 757 (824)
Q Consensus 697 ~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~---~i~~~~~------------~~----~~~ 757 (824)
.......+++|++|++++|. +....+ ..++.+++|+.|++++|. ++ .++.... .. .+.
T Consensus 316 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 316 HMLCPSKISPFLHLDFSNNL-LTDTVF-ENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCCCCSSCCCCCEEECCSSC-CCTTTT-TTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred cccchhhCCcccEEEeECCc-cChhhh-hhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 32223689999999999964 444322 346789999999999884 44 3322111 00 110
Q ss_pred -CcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 758 -PQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 758 -~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
....+++|++|+++++.--..+|..+. ++|+.|++++| ++..+|..+..+++|+.|++.+|
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 122334555555555532223333221 68888888886 78889998889999999999887
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=4.9e-23 Score=244.01 Aligned_cols=171 Identities=20% Similarity=0.255 Sum_probs=142.6
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. ..+.++++|++.+|.+..++. +.++++|++|++++|. +..+++..+.++++|++|+|++|.+.
T Consensus 9 ~~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 9 ADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred eECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccC
Confidence 3445566777776 456799999999999998876 8899999999999996 55565666799999999999999999
Q ss_pred cccc-cccCcccccEEecccccccccCC--CcccCCCccEEeccCCCCccc-CcccccCCCCcEEeccCccccccchhhh
Q 048180 507 ILPK-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLV 582 (824)
Q Consensus 507 ~lp~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~l 582 (824)
.+|. .++++.+|++|++++|. ++.+| .++++++|++|++++|.+... |..++++++|++|++++|.+..+++..+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 9987 58999999999999975 45555 499999999999999998855 4568899999999999999988877655
Q ss_pred c--CCCCCcEEEeecCcccccc
Q 048180 583 T--SLHNLQEFSMIGCDLLCLP 602 (824)
Q Consensus 583 ~--~L~~L~~L~l~~~~l~~~~ 602 (824)
+ .+++|++|++++|.+...+
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBC
T ss_pred hccccccccEEECCCCcccccC
Confidence 4 5689999999999876543
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.9e-23 Score=251.09 Aligned_cols=193 Identities=24% Similarity=0.265 Sum_probs=156.5
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. .+..+++|++++|.+..+.. +..+++|++|++++|.....+++..|.++++|++|+|++|.+.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 3445667778887 67899999999999988753 8999999999999997777887777899999999999999987
Q ss_pred cc-cccccCcccccEEecccccccccCC-C--cccCCCccEEeccCCCCcccC--cccccCCCCcEEeccCccccccchh
Q 048180 507 IL-PKSLSSLKYLTVLLLQNCIYLTCLP-S--LAELVELMVLDVSGSGIAEFP--DGMNHLTKLLFLNLSRTRVRNFPLH 580 (824)
Q Consensus 507 ~l-p~~i~~l~~L~~L~L~~c~~~~~lp-~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~ 580 (824)
.+ |..++++.+|++|+|++|.....+| . ++++++|++|++++|.+..++ ..++++++|++|++++|.+....+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 76 7789999999999999986555555 3 999999999999999998653 5789999999999999998776666
Q ss_pred hhcCC--CCCcEEEeecCccccccccccchhhhhchHhhhcCC------CccEEEEEecCcc
Q 048180 581 LVTSL--HNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLR------NLNVFDFTFVSLQ 634 (824)
Q Consensus 581 ~l~~L--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~------~L~~L~l~~~~~~ 634 (824)
.++.+ ++|+.|++++|.+..... ..++.+. .|+.|+++.|.+.
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~-----------~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVS-----------VDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCC-----------CCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred HcccccCCccceEECCCCccccccc-----------cchhhcCCccccCceeEEecCCCcCc
Confidence 67777 899999999987654211 1122222 4888998887654
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.1e-23 Score=237.86 Aligned_cols=370 Identities=15% Similarity=0.073 Sum_probs=185.3
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. ..+..+++|++++|.+..++. +..+++|++|++++|. +..+++..|..+++|++|+|++|.+.
T Consensus 36 l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 36 VDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp EECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EEcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 3334445555554 233566666666666666653 6666666777776664 34444444566666777777766666
Q ss_pred cccccccCcccccEEecccccccccC--C-CcccCCCccEEeccCCCCcccCcccccCCCC--cEEeccCccc--cccch
Q 048180 507 ILPKSLSSLKYLTVLLLQNCIYLTCL--P-SLAELVELMVLDVSGSGIAEFPDGMNHLTKL--LFLNLSRTRV--RNFPL 579 (824)
Q Consensus 507 ~lp~~i~~l~~L~~L~L~~c~~~~~l--p-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~~ 579 (824)
.+|.. .+.+|++|++++|. ++.+ | .++++++|++|++++|.+... .+..+++| ++|++++|.+ ....+
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp EECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred ccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCc
Confidence 66655 66666777766654 3332 2 366666677777666665532 33344444 6666666554 22222
Q ss_pred hhhc--------------------------CCCCCcEEEeecCccc--cc----------cc---------cccchhhhh
Q 048180 580 HLVT--------------------------SLHNLQEFSMIGCDLL--CL----------PR---------SLMQEDYAA 612 (824)
Q Consensus 580 ~~l~--------------------------~L~~L~~L~l~~~~l~--~~----------~~---------~~~~~~~~~ 612 (824)
..+. ++++|+.|++++|... .+ +. .........
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 268 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence 2222 2334444444443100 00 00 000000000
Q ss_pred chHhhhcCCCccEEEEEecCcc-chhhhhhh---hhcc--------------------------cceeEEEEeccCCCcc
Q 048180 613 FIEDVRKLRNLNVFDFTFVSLQ-SFKEYISS---QHWL--------------------------WLQSYKFSVGALGKGK 662 (824)
Q Consensus 613 ~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~---~~~~--------------------------~L~~L~l~~~~~~~~~ 662 (824)
........+|+.|+++.|.+. .+|..+.. ..++ +|+.|.++.+.+....
T Consensus 269 -~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 269 -LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp -HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred -HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 011112247888888877665 33332210 1122 2333333332221100
Q ss_pred c-------cccchh--hhccCCCCCccCCcCcceeeecccccceee----ccccCCCCCEEEEecCCCccc-cccchhhh
Q 048180 663 L-------RGNTLA--FMKEFPNDPIWLPWNTSELLLVHCNAVTQM----TIPNLQNLKFLEIFNCEGLKY-LFKYGVWC 728 (824)
Q Consensus 663 ~-------~~~~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~----~l~~l~~L~~L~L~~c~~l~~-l~~~~~l~ 728 (824)
. ...... .............++|++|++++|.-.... .+.++++|+.|+++++ .+.. ++ ...+.
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~ 425 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAY-DRTCA 425 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCS-SCCCC
T ss_pred CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccC-hhhhc
Confidence 0 000000 000000001122344444444443322100 1334445555555443 2222 22 12233
Q ss_pred hccccceeccccccchhhhhcccCCCCCCCcccc-cccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCcc-
Q 048180 729 CLRNLEELVIANCRNLEKVIEQDDDENSNPQVCW-RSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPIS- 806 (824)
Q Consensus 729 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~-p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~- 806 (824)
.+++|+.|++++|.--..++ ..+ ++|++|+++++ .+..+|.++..+++|++|++++| +++.+|..
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~-----------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~ 492 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVF-----------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGV 492 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGG-----------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTS
T ss_pred CcccCCEEECCCCCCCcchh-----------hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 44555555555442111111 123 68999999998 78889888889999999999985 78899987
Q ss_pred ccccccceeccCCCC
Q 048180 807 LWVENYAQKLKSPCS 821 (824)
Q Consensus 807 ~~~l~~L~~L~~~~~ 821 (824)
+..+++|+.|++.++
T Consensus 493 ~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 493 FDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTTCTTCCCEECCSC
T ss_pred HhcCCCCCEEEecCC
Confidence 888999999998875
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=229.15 Aligned_cols=308 Identities=19% Similarity=0.193 Sum_probs=211.9
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. ..+..++.|++.+|.+..++. +..+++|++|++++|. +..+++..|.++++|++|+|++|.+.
T Consensus 16 v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 16 VLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp EECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCC
Confidence 3444556667776 456789999999999988854 8899999999999996 55555556799999999999999999
Q ss_pred ccccc-ccCcccccEEecccccccccCC-CcccCCCccEEeccCCCCccc-CcccccCCCCcEEeccCccccccchhhhc
Q 048180 507 ILPKS-LSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLVT 583 (824)
Q Consensus 507 ~lp~~-i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~l~ 583 (824)
.+|.. +.++.+|++|+|++|......| .+.++++|++|++++|.+..+ |..+..+++|++|++++|.+..+++..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 99874 6899999999999986555556 499999999999999999866 45789999999999999999999988899
Q ss_pred CCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc-chhhhhhhhhcccceeEEEEeccCCCcc
Q 048180 584 SLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ-SFKEYISSQHWLWLQSYKFSVGALGKGK 662 (824)
Q Consensus 584 ~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 662 (824)
++++|+.|++.+|.+..++ ...+..+++|+.|+++.+... .++... ....+|+.|.++.+.+..
T Consensus 174 ~l~~L~~L~l~~n~i~~~~-----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~-- 238 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIR-----------DYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLTA-- 238 (477)
T ss_dssp TCTTCCEEEEESCCCCEEC-----------TTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCCS--
T ss_pred ccCCCcEEeCCCCcCcEeC-----------hhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCcccc--
Confidence 9999999999999866543 234778899999999986543 222211 111256666665443311
Q ss_pred ccccchhhhccCCCCCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceecccc
Q 048180 663 LRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIAN 740 (824)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~ 740 (824)
++...+..+++|+.|++++|...... .+..+++|+.|+|+++ .+..+.+ ..+..+++|+.|+|++
T Consensus 239 -----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 239 -----------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEP-YAFRGLNYLRVLNVSG 305 (477)
T ss_dssp -----------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS-CCSEECT-TTBTTCTTCCEEECCS
T ss_pred -----------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC-ccceECH-HHhcCcccCCEEECCC
Confidence 11111123455666666655432222 2445566666666553 3343322 2344556666666665
Q ss_pred ccchhhhhcccCCCCCCCcccccccCeEeccCCc
Q 048180 741 CRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLP 774 (824)
Q Consensus 741 ~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~ 774 (824)
| .++.++.. .+..+++|++|++++++
T Consensus 306 N-~l~~~~~~-------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 306 N-QLTTLEES-------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp S-CCSCCCGG-------GBSCGGGCCEEECCSSC
T ss_pred C-cCceeCHh-------HcCCCcccCEEEccCCC
Confidence 5 33333311 12245566666665553
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=223.80 Aligned_cols=299 Identities=18% Similarity=0.138 Sum_probs=239.5
Q ss_pred CCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEE
Q 048180 445 SGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVL 521 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L 521 (824)
..+++.+++.++.+..+|. +..+++|++|++++|. +..+++..|..+++|++|+|++|.+..+|. .++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4688999999999999887 7889999999999996 566776668999999999999999988765 57999999999
Q ss_pred ecccccccccCC-C-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcc
Q 048180 522 LLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 522 ~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l 598 (824)
++++| .++.+| . ++++++|++|++++|.+..++. .+.++++|++|++++|.+..++ ++.+++|+.|++++|.+
T Consensus 123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 99996 566777 4 6999999999999999997755 5899999999999999988774 56789999999999864
Q ss_pred ccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCC
Q 048180 599 LCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDP 678 (824)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 678 (824)
.. +....+|+.|+++.|.+...+.. ...+|+.|.++.+.+... ..
T Consensus 199 ~~----------------~~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~---------------~~ 243 (390)
T 3o6n_A 199 ST----------------LAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT---------------AW 243 (390)
T ss_dssp SE----------------EECCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCC---------------GG
T ss_pred cc----------------cCCCCcceEEECCCCeeeecccc----ccccccEEECCCCCCccc---------------HH
Confidence 33 34456899999999888766442 236788888876654221 11
Q ss_pred ccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCC
Q 048180 679 IWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENS 756 (824)
Q Consensus 679 ~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 756 (824)
...+++|++|++++|...... .+..+++|+.|+++++ .+..++. ....+++|+.|++++| .++.++.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~------- 312 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER------- 312 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG-------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCc-------
Confidence 235678999999998754443 5778999999999985 6666644 2457899999999998 5555553
Q ss_pred CCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCC
Q 048180 757 NPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCC 798 (824)
Q Consensus 757 ~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~ 798 (824)
.+..+++|++|++++++ +..++ +..+++|+.|++++++
T Consensus 313 -~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 313 -NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred -cccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 34578999999999984 66664 6789999999999863
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=6.5e-22 Score=234.34 Aligned_cols=153 Identities=21% Similarity=0.210 Sum_probs=104.6
Q ss_pred CCcccceeecc--ccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcc
Q 048180 432 PGRRLRKFVYE--DWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGI 507 (824)
Q Consensus 432 ~~~~~~~~~~~--~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 507 (824)
.+..+..++.. .....+++|++.+|.+..++. +.++++|++|++++|. +..+|...|.++++|++|+|++|.+..
T Consensus 33 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 33 THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQK 111 (680)
T ss_dssp CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCc
Confidence 33344444432 234578888888887777654 6678888888888875 556776667788888888888888777
Q ss_pred cc-ccccCcccccEEecccccccccCCC-cccCCCccEEeccCCCCcccCcc---cccCCCCcEEeccCccccccchhhh
Q 048180 508 LP-KSLSSLKYLTVLLLQNCIYLTCLPS-LAELVELMVLDVSGSGIAEFPDG---MNHLTKLLFLNLSRTRVRNFPLHLV 582 (824)
Q Consensus 508 lp-~~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~---i~~L~~L~~L~l~~~~~~~~~~~~l 582 (824)
+| ..++++.+|++|++++|......|. ++++++|++|++++|.++.++.. ...+++|++|++++|.+..+++..+
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence 76 4678888888888888754444453 77888888888888877766543 2345677777777776665555444
Q ss_pred cCC
Q 048180 583 TSL 585 (824)
Q Consensus 583 ~~L 585 (824)
+.+
T Consensus 192 ~~l 194 (680)
T 1ziw_A 192 HAI 194 (680)
T ss_dssp GGS
T ss_pred hhh
Confidence 433
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.5e-21 Score=225.60 Aligned_cols=356 Identities=17% Similarity=0.098 Sum_probs=239.6
Q ss_pred CccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEeccc
Q 048180 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 525 (824)
..+++++.++.+..+|... .++|++|++++|. +..+++..|..+++|++|+|++|.+..+ |..+..+.+|++|+|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3489999999999988722 2899999999997 6677766789999999999999999887 56799999999999999
Q ss_pred ccccccCCCcccCCCccEEeccCCCCcccC--cccccCCCCcEEeccCccccccchhhhcCCCCC--cEEEeecCcc--c
Q 048180 526 CIYLTCLPSLAELVELMVLDVSGSGIAEFP--DGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNL--QEFSMIGCDL--L 599 (824)
Q Consensus 526 c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L--~~L~l~~~~l--~ 599 (824)
|. ++.+|.. .+++|++|++++|.++.+| ..++++++|++|++++|.+.... +..+++| ++|++++|.+ .
T Consensus 110 N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred Cc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccccc
Confidence 64 6788855 8999999999999999765 78999999999999999886543 4555555 9999999876 3
Q ss_pred cccc-cccc------------------------------------------hhhhhchHhhhcCCCccEEEEEecCccc-
Q 048180 600 CLPR-SLMQ------------------------------------------EDYAAFIEDVRKLRNLNVFDFTFVSLQS- 635 (824)
Q Consensus 600 ~~~~-~~~~------------------------------------------~~~~~~~~~l~~L~~L~~L~l~~~~~~~- 635 (824)
.... .... ......+..+..+++|+.+++..+.+..
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 2211 1100 0001112234444455555554443321
Q ss_pred -hhhhhhhhhcccceeEEEEeccCCCcccccc------chhh--------------------------hc-------cCC
Q 048180 636 -FKEYISSQHWLWLQSYKFSVGALGKGKLRGN------TLAF--------------------------MK-------EFP 675 (824)
Q Consensus 636 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~--------------------------~~-------~l~ 675 (824)
+..........+|+.|.++.+.+...-.... .... ++ .+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 1111111122478888887665421100000 0000 00 000
Q ss_pred CCC-ccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCcccccc-chhhhhccccceeccccccchhh-hhcc
Q 048180 676 NDP-IWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFK-YGVWCCLRNLEELVIANCRNLEK-VIEQ 750 (824)
Q Consensus 676 ~~~-~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~-~~~l~~l~~L~~L~l~~~~~l~~-i~~~ 750 (824)
... ...+++|++|++++|.-.... .+.++++|+.|+++++ .+..++. ...+..+++|+.|++++|. ++. ++.
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~- 421 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYD- 421 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSS-
T ss_pred cccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccCh-
Confidence 001 135577888888777544322 4667888888888874 5555432 1235678888888888874 332 332
Q ss_pred cCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccccceeccCCCC
Q 048180 751 DDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 751 ~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~~~ 821 (824)
.....+++|++|+++++.--...|..+. ++|+.|++++| +++.+|..+..+++|+.|++.++
T Consensus 422 ------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 422 ------RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp ------CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred ------hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence 1244678999999999853344444332 79999999997 89999999889999999999887
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=5.4e-22 Score=221.89 Aligned_cols=304 Identities=16% Similarity=0.141 Sum_probs=219.4
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
...++++++.++.+..+|.+..+++|++|++++|. +..+| +..+++|++|++++|.+..+| ++.+++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 45789999999988888888889999999999986 44555 578899999999999988875 8899999999999
Q ss_pred cccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCcc-ccccchhhhcCCCCCcEEEeecCccccccc
Q 048180 525 NCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTR-VRNFPLHLVTSLHNLQEFSMIGCDLLCLPR 603 (824)
Q Consensus 525 ~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~-~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~ 603 (824)
+| .++.+| ++++++|++|++++|.++.+| ++++++|++|++++|. +..++ ++.+++|++|++++|.+..++
T Consensus 115 ~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 115 TN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp SS-CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC-
T ss_pred CC-cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec-
Confidence 86 455666 888999999999999988875 7788999999999884 34442 678899999999988765431
Q ss_pred cccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCc
Q 048180 604 SLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPW 683 (824)
Q Consensus 604 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 683 (824)
++.+++|+.|+++.|.+...+ ...+++|+.|.++.+.+.. + +...++
T Consensus 187 -------------l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~-------------i---p~~~l~ 233 (457)
T 3bz5_A 187 -------------VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTE-------------I---DVTPLT 233 (457)
T ss_dssp -------------CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC-------------C---CCTTCT
T ss_pred -------------cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccc-------------c---CccccC
Confidence 567788888888888877652 3456778888776654421 1 134567
Q ss_pred CcceeeecccccceeeccccCCCCCE----------EEEecCCCccccccchhhhhccccceeccccccchhhhhcccCC
Q 048180 684 NTSELLLVHCNAVTQMTIPNLQNLKF----------LEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDD 753 (824)
Q Consensus 684 ~L~~L~l~~~~~~~~~~l~~l~~L~~----------L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 753 (824)
+|+.|++++|.-. ..++..+++|+. |++++|.....+| .+.+++|+.|++++|+.++.++.....
T Consensus 234 ~L~~L~l~~N~l~-~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 234 QLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp TCSEEECCSSCCS-CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred CCCEEEeeCCcCC-CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCc
Confidence 8888888877533 233445555554 4444444444443 346788999999988877766632211
Q ss_pred CCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCC
Q 048180 754 ENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFP 804 (824)
Q Consensus 754 ~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp 804 (824)
-....+...|+|++|+++++ .+..++ +..+++|+.|++++ +++..+|
T Consensus 309 L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~-N~l~~l~ 355 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN-AHIQDFS 355 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCS-SCCCBCT
T ss_pred ceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCC-CCCCCcc
Confidence 11113445677888888777 466653 77888999999887 3566543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.9e-22 Score=234.42 Aligned_cols=299 Identities=18% Similarity=0.143 Sum_probs=230.2
Q ss_pred CCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEE
Q 048180 445 SGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVL 521 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L 521 (824)
...++.+++.++.+..+|. +..+++|++|++++|. +..+++..|..+++|++|+|++|.+..+|. .++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3578899999998888887 6789999999999996 556666567899999999999999988776 46999999999
Q ss_pred ecccccccccCC-C-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcc
Q 048180 522 LLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 522 ~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l 598 (824)
+|++| .++.+| . ++++++|++|++++|.+..+|. .++++++|++|++++|.+..++ ++.+++|+.|++++|.+
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 99997 466777 4 6999999999999999987665 6889999999999999988775 56788999999998864
Q ss_pred ccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCC
Q 048180 599 LCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDP 678 (824)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 678 (824)
.. +....+|+.|++++|.+..++... ..+|+.|.++.+.+... ..
T Consensus 205 ~~----------------l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~---------------~~ 249 (597)
T 3oja_B 205 ST----------------LAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT---------------AW 249 (597)
T ss_dssp SE----------------EECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC---------------GG
T ss_pred cc----------------ccCCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC---------------hh
Confidence 33 344567888898888877665433 25788887766554221 11
Q ss_pred ccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCC
Q 048180 679 IWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENS 756 (824)
Q Consensus 679 ~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 756 (824)
...+++|+.|++++|...... .+..+++|+.|+|++| .+..++. ....+++|+.|+|++| .+..++.
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~------- 318 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER------- 318 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG-------
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCc-------
Confidence 234678999999887654443 5778899999999884 5666643 2456889999999988 4444543
Q ss_pred CCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCC
Q 048180 757 NPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCC 798 (824)
Q Consensus 757 ~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~ 798 (824)
.+..+|+|++|+|++|. +..++ +..+++|+.|++++++
T Consensus 319 -~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 -NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred -ccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 34578899999999884 55554 6678899999998864
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.4e-21 Score=217.91 Aligned_cols=337 Identities=16% Similarity=0.207 Sum_probs=247.4
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc-cc-cccccCcccccEEecccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG-IL-PKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~l-p~~i~~l~~L~~L~L~~c 526 (824)
+.+...++.+..+|.+ .++|++|++++|. +..+++..+.++++|++|+|++|.+. .+ |..+..+++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPEL--PAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCCC--CTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCCC--CCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4567777788888873 3789999999997 45555555799999999999999974 55 457899999999999998
Q ss_pred cccccCC-CcccCCCccEEeccCCCCcc-cCcc--cccCCCCcEEeccCccccccchh-hhcCCCCCcEEEeecCccccc
Q 048180 527 IYLTCLP-SLAELVELMVLDVSGSGIAE-FPDG--MNHLTKLLFLNLSRTRVRNFPLH-LVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 527 ~~~~~lp-~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~~~-~l~~L~~L~~L~l~~~~l~~~ 601 (824)
......| .++++++|++|++++|.++. .|.. +.++++|++|++++|.+..+++. .++++++|++|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 6555556 49999999999999999984 4554 88999999999999999877544 489999999999999987654
Q ss_pred cccccchhhhhchHhhhcC--CCccEEEEEecCccchhhhhh-------hhhcccceeEEEEeccCCCccccccchhhhc
Q 048180 602 PRSLMQEDYAAFIEDVRKL--RNLNVFDFTFVSLQSFKEYIS-------SQHWLWLQSYKFSVGALGKGKLRGNTLAFMK 672 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 672 (824)
+. ..+..+ .+|+.|+++.+.+...+.... ....++|+.|.++.+.+.... ...+..
T Consensus 170 ~~-----------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~ 234 (455)
T 3v47_A 170 CE-----------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM----AKRFFD 234 (455)
T ss_dssp CT-----------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH----HHHHHH
T ss_pred Ch-----------hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc----hhhhhc
Confidence 32 223333 578899998888776543321 113357888877655432110 000100
Q ss_pred cCCCCCccCCcCcceeeecccccceee------------ccc--cCCCCCEEEEecCCCccccccchhhhhccccceecc
Q 048180 673 EFPNDPIWLPWNTSELLLVHCNAVTQM------------TIP--NLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVI 738 (824)
Q Consensus 673 ~l~~~~~~~~~~L~~L~l~~~~~~~~~------------~l~--~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l 738 (824)
. ....+|+.|.+.+|...... .+. ..++|+.|++++| .+...++ ..++.+++|+.|++
T Consensus 235 ~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L 306 (455)
T 3v47_A 235 A------IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLK-SVFSHFTDLEQLTL 306 (455)
T ss_dssp H------TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECT-TTTTTCTTCCEEEC
T ss_pred c------ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cccccch-hhcccCCCCCEEEC
Confidence 0 12367888888877533221 112 2378999999986 4555433 45788999999999
Q ss_pred ccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcc-ccCcccCCCccEEEecCCCCcCCC-Cccccccccceec
Q 048180 739 ANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFM-YSGEAQCDFVQTIGIWSCCKLERF-PISLWVENYAQKL 816 (824)
Q Consensus 739 ~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~-~~~~~~lpsL~~L~i~~C~~L~~l-p~~~~~l~~L~~L 816 (824)
++|. ++.++ +..+..+++|++|+++++ .+..+ +..+..+++|++|++++| ++..+ |..+..+++|+.|
T Consensus 307 s~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 307 AQNE-INKID-------DNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCc-ccccC-------hhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEE
Confidence 9884 44332 224557899999999999 45666 566788999999999997 56666 6678999999999
Q ss_pred cCCCC
Q 048180 817 KSPCS 821 (824)
Q Consensus 817 ~~~~~ 821 (824)
++.++
T Consensus 377 ~L~~N 381 (455)
T 3v47_A 377 ALDTN 381 (455)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 99887
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.1e-20 Score=211.30 Aligned_cols=300 Identities=18% Similarity=0.154 Sum_probs=210.6
Q ss_pred ccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccC
Q 048180 435 RLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSS 514 (824)
Q Consensus 435 ~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~ 514 (824)
.+..+|.-.....+++|++.+|.+..++ +..+++|++|++++|. +..++ +..+++|++|++++|.+..+| ++.
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~ 125 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQ 125 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCCcCCeec--CCC
Confidence 3333333234568899999999888876 7888999999999986 44454 578899999999999988875 888
Q ss_pred cccccEEecccccccccCCCcccCCCccEEeccCC-CCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEe
Q 048180 515 LKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGS-GIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSM 593 (824)
Q Consensus 515 l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l 593 (824)
+++|++|++++|. ++.+| ++++++|++|++++| .+..+ .++.+++|++|++++|.+..+| ++.+++|+.|++
T Consensus 126 l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l 198 (457)
T 3bz5_A 126 NPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNC 198 (457)
T ss_dssp CTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEEC
T ss_pred CCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEEC
Confidence 9999999999864 55554 888889999999988 55566 4778889999999999888775 678889999999
Q ss_pred ecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhcc
Q 048180 594 IGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKE 673 (824)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 673 (824)
++|.+..+ .++.+++|+.|+++.|.+..++ ...+++|+.|.++.+.+..... .....++.
T Consensus 199 ~~N~l~~~--------------~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~~ 258 (457)
T 3bz5_A 199 DTNNITKL--------------DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDV--STLSKLTT 258 (457)
T ss_dssp CSSCCSCC--------------CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCC--TTCTTCCE
T ss_pred cCCcCCee--------------ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcCH--HHCCCCCE
Confidence 88875542 2667788889999888888765 3456788888887665533211 00000000
Q ss_pred CCCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCC
Q 048180 674 FPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDD 753 (824)
Q Consensus 674 l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 753 (824)
+. ....+|+.|++++|......+...+++|+.|++++|..+..++. ..++|+.|++++|+.++.+.-....
T Consensus 259 L~----l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 259 LH----CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp EE----CTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred Ee----ccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCEEECCCCc
Confidence 00 01236778888888777666777889999999999987777653 2455555566655555544321110
Q ss_pred CCCCCcccccccCeEeccCCcchhc
Q 048180 754 ENSNPQVCWRSLRKLILSNLPELRF 778 (824)
Q Consensus 754 ~~~~~~~~~p~L~~L~l~~~~~L~~ 778 (824)
-....+..+++|+.|+++++ .+..
T Consensus 330 l~~l~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 330 LTELDVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp CSCCCCTTCTTCSEEECCSS-CCCB
T ss_pred ccccccccCCcCcEEECCCC-CCCC
Confidence 00113667899999999886 3443
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.8e-21 Score=209.14 Aligned_cols=285 Identities=18% Similarity=0.181 Sum_probs=165.6
Q ss_pred CccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC-CcccCCCccEEec
Q 048180 469 KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDV 546 (824)
Q Consensus 469 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l 546 (824)
+++.++++++. ...+|..+ .++|++|++++|.+..++. .+..+.+|++|++++|......| .++++++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 56667766664 44566533 3567777777777766643 56777777777777754333334 3777777777777
Q ss_pred cCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEE
Q 048180 547 SGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVF 626 (824)
Q Consensus 547 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L 626 (824)
++|.++.+|..+. ++|++|++++|.+..+++..++++++|++|++++|.+.... .....+..+ +|+.|
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---------FEPGAFDGL-KLNYL 177 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG---------SCTTSSCSC-CCSCC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC---------CCcccccCC-ccCEE
Confidence 7777777776655 67777777777777776666777777777777776643210 112233444 66666
Q ss_pred EEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceee--ccccC
Q 048180 627 DFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM--TIPNL 704 (824)
Q Consensus 627 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l 704 (824)
+++.|.+..++.. .+++|++|++++|...... .+..+
T Consensus 178 ~l~~n~l~~l~~~-----------------------------------------~~~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 178 RISEAKLTGIPKD-----------------------------------------LPETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp BCCSSBCSSCCSS-----------------------------------------SCSSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred ECcCCCCCccCcc-----------------------------------------ccCCCCEEECCCCcCCccCHHHhcCC
Confidence 6666655432211 1245555555554432222 35556
Q ss_pred CCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccC-c
Q 048180 705 QNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSG-E 783 (824)
Q Consensus 705 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~-~ 783 (824)
++|+.|+++++ .+..+++ ..+..+++|+.|++++| .++.++. .+..+++|++|+++++ .+..++.. +
T Consensus 217 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~--------~l~~l~~L~~L~l~~N-~l~~~~~~~~ 284 (332)
T 2ft3_A 217 SKLYRLGLGHN-QIRMIEN-GSLSFLPTLRELHLDNN-KLSRVPA--------GLPDLKLLQVVYLHTN-NITKVGVNDF 284 (332)
T ss_dssp TTCSCCBCCSS-CCCCCCT-TGGGGCTTCCEEECCSS-CCCBCCT--------TGGGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred CCCCEEECCCC-cCCcCCh-hHhhCCCCCCEEECCCC-cCeecCh--------hhhcCccCCEEECCCC-CCCccChhHc
Confidence 66777777663 4444432 23556777777777766 3443432 3446677777777776 45555432 1
Q ss_pred c------cCCCccEEEecCCCCc--CCCCccccccccceeccCCCCc
Q 048180 784 A------QCDFVQTIGIWSCCKL--ERFPISLWVENYAQKLKSPCSL 822 (824)
Q Consensus 784 ~------~lpsL~~L~i~~C~~L--~~lp~~~~~l~~L~~L~~~~~~ 822 (824)
. .+++|+.|.+.+++-. ...|..+..+++|+.+++.++.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1 1466777777776533 2344556677777777776654
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.1e-20 Score=208.76 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=113.6
Q ss_pred cCCcccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc
Q 048180 431 KPGRRLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK 510 (824)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~ 510 (824)
..+..+..+|. .+..++.+++.+|.+..+|.. .++|++|++++|. +..++. ..++|++|++++|.+..+|
T Consensus 78 l~~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~-l~~l~~----~~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 78 LNNLGLSSLPE--LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp CTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSCCSSCC-
T ss_pred ecCCccccCCC--CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCc-cCcccC----CCCCCCEEECcCCCCCCCc-
Confidence 33444444443 345677777777777666542 3667777777664 333332 1256777777777776666
Q ss_pred cccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcE
Q 048180 511 SLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQE 590 (824)
Q Consensus 511 ~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~ 590 (824)
.++.+.+|++|++++| .++.+|.. ..+|++|++++|.++.+| .++++++|++|++++|.+..+|.. .++|++
T Consensus 148 ~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~ 219 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLES 219 (454)
T ss_dssp CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCE
T ss_pred ccCCCCCCCEEECCCC-cCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccE
Confidence 4677777777777765 34455532 136777777777776666 466777777777777766655432 246677
Q ss_pred EEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEecc
Q 048180 591 FSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGA 657 (824)
Q Consensus 591 L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 657 (824)
|++++|.+..++ .++.+++|+.|++++|.+..++... .+|+.|.++.+.
T Consensus 220 L~l~~n~l~~lp-------------~~~~l~~L~~L~l~~N~l~~l~~~~-----~~L~~L~l~~N~ 268 (454)
T 1jl5_A 220 IVAGNNILEELP-------------ELQNLPFLTTIYADNNLLKTLPDLP-----PSLEALNVRDNY 268 (454)
T ss_dssp EECCSSCCSSCC-------------CCTTCTTCCEEECCSSCCSSCCSCC-----TTCCEEECCSSC
T ss_pred EECcCCcCCccc-------------ccCCCCCCCEEECCCCcCCcccccc-----cccCEEECCCCc
Confidence 777766544322 2456666777777666666544322 456666555443
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=7.4e-21 Score=229.98 Aligned_cols=330 Identities=16% Similarity=0.134 Sum_probs=224.9
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC-Cccc-cccccCcccccEEecccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS-MGIL-PKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~l-p~~i~~l~~L~~L~L~~c 526 (824)
+.++.+++++..+|. -.++|++|++++|. +..+++..|.++++|++|+|++|. +..+ |..++++.+|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456677788888887 56899999999997 455555557999999999999995 5666 678999999999999998
Q ss_pred cccccCC-CcccCCCccEEeccCCCCcc-cCcc--cccCCCCcEEeccCccccccch-hhhcCCCCCcEEEeecCccccc
Q 048180 527 IYLTCLP-SLAELVELMVLDVSGSGIAE-FPDG--MNHLTKLLFLNLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 527 ~~~~~lp-~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~~ 601 (824)
......| .++++++|++|++++|.+.. +|.. ++++++|++|++++|.+..+++ ..++++++|++|++++|.+...
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 6555557 49999999999999999885 5665 8999999999999999976643 4589999999999999986553
Q ss_pred cccccchhhhhchHhhhcC--CCccEEEEEecCccchhh-hhh----hhhcccceeEEEEeccCCCccccccc-------
Q 048180 602 PRSLMQEDYAAFIEDVRKL--RNLNVFDFTFVSLQSFKE-YIS----SQHWLWLQSYKFSVGALGKGKLRGNT------- 667 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~~~-~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~------- 667 (824)
. ...+..+ ++|+.|+++.|.+..... .+. ......|+.|.++.+.+.........
T Consensus 164 ~-----------~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 164 C-----------EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp C-----------SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred C-----------HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 2 2234444 789999999887654211 110 00112477777765533211100000
Q ss_pred h----------------hhhccC--CCCCccCCcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhh
Q 048180 668 L----------------AFMKEF--PNDPIWLPWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVW 727 (824)
Q Consensus 668 ~----------------~~~~~l--~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l 727 (824)
. ...... .......+++|+.|++++|...... .+..+++|+.|+|+++ .+..+++ ..+
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~-~~~ 310 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIAD-EAF 310 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECT-TTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCCh-HHh
Confidence 0 000000 0001112467888888877644332 4677888888888874 4555533 346
Q ss_pred hhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcccc-CcccCCCccEEEecCCCCcCCCC
Q 048180 728 CCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYS-GEAQCDFVQTIGIWSCCKLERFP 804 (824)
Q Consensus 728 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~-~~~~lpsL~~L~i~~C~~L~~lp 804 (824)
..+++|+.|++++|. +..+. +..+..+|+|++|+++++ .+..++. .+..+++|+.|++++| .+..+|
T Consensus 311 ~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~ 378 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNL-LGELY-------SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH 378 (844)
T ss_dssp TTCSSCCEEEEESCC-CSCCC-------SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCS
T ss_pred cCCCCCCEEECCCCC-CCccC-------HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCccc
Confidence 778888888888773 33332 224456778888888877 4555543 3666777777777774 455544
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.9e-20 Score=219.92 Aligned_cols=167 Identities=21% Similarity=0.234 Sum_probs=139.7
Q ss_pred cCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc
Q 048180 431 KPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL 508 (824)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l 508 (824)
..+..+..+|. ..+..+++|++++|.++.++. +.++++|++|++++|. +..+++..|.++++|++|+|++|.+..+
T Consensus 38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 34556777886 567899999999999999875 8999999999999996 6778888889999999999999999999
Q ss_pred cc-cccCcccccEEecccccccccCC--CcccCCCccEEeccCCCCc--ccCcccccCCCCcEEeccCccccccchhhhc
Q 048180 509 PK-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGSGIA--EFPDGMNHLTKLLFLNLSRTRVRNFPLHLVT 583 (824)
Q Consensus 509 p~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~ 583 (824)
|. .+.++.+|++|+|++| .++.+| .++++++|++|++++|.++ .+|..++.+++|++|++++|.+..+++..+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 86 5799999999999997 466676 3999999999999999987 4678899999999999999999888766666
Q ss_pred CCCCCc----EEEeecCcccc
Q 048180 584 SLHNLQ----EFSMIGCDLLC 600 (824)
Q Consensus 584 ~L~~L~----~L~l~~~~l~~ 600 (824)
.+.+++ .++++.|.+..
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCE
T ss_pred chhhhhhhhhhhhcccCcccc
Confidence 554443 56666655433
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.2e-20 Score=202.50 Aligned_cols=285 Identities=17% Similarity=0.148 Sum_probs=197.9
Q ss_pred CccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC-CcccCCCccEEec
Q 048180 469 KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDV 546 (824)
Q Consensus 469 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l 546 (824)
+++.++++++. ...+|..+ .+.|++|+|++|.+..+|. .++++++|++|++++|......| .++++++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 67788887764 55666543 3678888888888877776 67888889999988865444446 4888889999999
Q ss_pred cCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEE
Q 048180 547 SGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVF 626 (824)
Q Consensus 547 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L 626 (824)
++|.++.+|..+. ++|++|++++|.+..+++..++++++|++|++++|.+.... .....+..+++|+.|
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---------IENGAFQGMKKLSYI 176 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------BCTTGGGGCTTCCEE
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC---------cChhhccCCCCcCEE
Confidence 9888888887765 78899999988888888777888999999999888754311 123457778888888
Q ss_pred EEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceee--ccccC
Q 048180 627 DFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM--TIPNL 704 (824)
Q Consensus 627 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l 704 (824)
+++.|.+..++.. .+++|++|++++|...... .+..+
T Consensus 177 ~l~~n~l~~l~~~-----------------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 177 RIADTNITTIPQG-----------------------------------------LPPSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp ECCSSCCCSCCSS-----------------------------------------CCTTCSEEECTTSCCCEECTGGGTTC
T ss_pred ECCCCccccCCcc-----------------------------------------ccccCCEEECCCCcCCccCHHHhcCC
Confidence 8887766543211 1256777777776533322 46677
Q ss_pred CCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccC-c
Q 048180 705 QNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSG-E 783 (824)
Q Consensus 705 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~-~ 783 (824)
++|+.|+++++ .+..+++ ..+..+++|+.|++++| .++.++. .+..+++|++|+++++ .+..++.. +
T Consensus 216 ~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~--------~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 216 NNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNN-KLVKVPG--------GLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp TTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSS-CCSSCCT--------TTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred CCCCEEECCCC-cCceeCh-hhccCCCCCCEEECCCC-cCccCCh--------hhccCCCcCEEECCCC-cCCccChhhc
Confidence 88888888874 4555533 34667888888888887 4444442 3456788888888887 46666542 1
Q ss_pred ------ccCCCccEEEecCCCCcC--CCCccccccccceeccCCCC
Q 048180 784 ------AQCDFVQTIGIWSCCKLE--RFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 784 ------~~lpsL~~L~i~~C~~L~--~lp~~~~~l~~L~~L~~~~~ 821 (824)
...++|+.|++.+.|--. ..|..+..+.+|+.+++.++
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 134778888888865321 33455667788888887654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6.4e-21 Score=203.86 Aligned_cols=231 Identities=22% Similarity=0.272 Sum_probs=150.2
Q ss_pred CCCCCcEEEecCCCCccccccccCcccccEEecccccccccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEec
Q 048180 491 SFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNL 569 (824)
Q Consensus 491 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 569 (824)
...+++.|+|+++.+..+|..++++.+|++|+|++|. ++.+| .++++++|++|++++|.++.+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 4578888999998888888888889999999998864 45788 488899999999999988888888888999999998
Q ss_pred cCccc-cccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccc
Q 048180 570 SRTRV-RNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWL 648 (824)
Q Consensus 570 ~~~~~-~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L 648 (824)
++|.. ..+|.. ++. ..+ ...++.+++|+.|++++|.+..++..
T Consensus 158 ~~n~~~~~~p~~-~~~------~~~--------------------~~~~~~l~~L~~L~L~~n~l~~lp~~--------- 201 (328)
T 4fcg_A 158 RACPELTELPEP-LAS------TDA--------------------SGEHQGLVNLQSLRLEWTGIRSLPAS--------- 201 (328)
T ss_dssp EEETTCCCCCSC-SEE------EC---------------------CCCEEESTTCCEEEEEEECCCCCCGG---------
T ss_pred CCCCCccccChh-Hhh------ccc--------------------hhhhccCCCCCEEECcCCCcCcchHh---------
Confidence 88765 444432 222 100 11244556666666665544322211
Q ss_pred eeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecCCCccccccchhhh
Q 048180 649 QSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWC 728 (824)
Q Consensus 649 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~ 728 (824)
+.++++|+.|++++| .+..+++ .++
T Consensus 202 ----------------------------------------------------l~~l~~L~~L~L~~N-~l~~l~~--~l~ 226 (328)
T 4fcg_A 202 ----------------------------------------------------IANLQNLKSLKIRNS-PLSALGP--AIH 226 (328)
T ss_dssp ----------------------------------------------------GGGCTTCCEEEEESS-CCCCCCG--GGG
T ss_pred ----------------------------------------------------hcCCCCCCEEEccCC-CCCcCch--hhc
Confidence 123344555555543 3333332 244
Q ss_pred hccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCcccc
Q 048180 729 CLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLW 808 (824)
Q Consensus 729 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~ 808 (824)
.+++|+.|++++|.....++. .+..+++|++|+|++|..+..+|..+..+++|+.|++++|+.+..+|..+.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 566666666666544443332 334566677777777666666666666777777777777777777777777
Q ss_pred ccccceeccCCCC
Q 048180 809 VENYAQKLKSPCS 821 (824)
Q Consensus 809 ~l~~L~~L~~~~~ 821 (824)
++++|+.+++...
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 7777777666543
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=5.6e-20 Score=205.33 Aligned_cols=300 Identities=20% Similarity=0.164 Sum_probs=216.5
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL 508 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l 508 (824)
+...+..+..+|. ....++.+++.+|.+..++... ++|++|++++|. +..+|. +..+++|++|++++|.+..+
T Consensus 96 L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 96 LVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQ-LEKLPE--LQNSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred EEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCC-CCCCcc--cCCCCCCCEEECCCCcCccc
Confidence 3334445555553 3478999999999988876543 799999999997 445883 78999999999999999888
Q ss_pred cccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCC
Q 048180 509 PKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNL 588 (824)
Q Consensus 509 p~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L 588 (824)
|..+ .+|++|++++| .++.+|.++++++|++|++++|.++.+|... .+|++|++++|.+..+|. ++.+++|
T Consensus 169 p~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L 239 (454)
T 1jl5_A 169 PDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE--LQNLPFL 239 (454)
T ss_dssp CCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTC
T ss_pred CCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc--cCCCCCC
Confidence 8754 58999999997 5667889999999999999999999888643 589999999999988873 8999999
Q ss_pred cEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccch
Q 048180 589 QEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTL 668 (824)
Q Consensus 589 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 668 (824)
++|++++|.+..++. .+++|+.|+++.|.+..++... .+|+.|.++.+.+..
T Consensus 240 ~~L~l~~N~l~~l~~---------------~~~~L~~L~l~~N~l~~l~~~~-----~~L~~L~ls~N~l~~-------- 291 (454)
T 1jl5_A 240 TTIYADNNLLKTLPD---------------LPPSLEALNVRDNYLTDLPELP-----QSLTFLDVSENIFSG-------- 291 (454)
T ss_dssp CEEECCSSCCSSCCS---------------CCTTCCEEECCSSCCSCCCCCC-----TTCCEEECCSSCCSE--------
T ss_pred CEEECCCCcCCcccc---------------cccccCEEECCCCcccccCccc-----CcCCEEECcCCccCc--------
Confidence 999999998665432 1368999999999888766543 678888877654411
Q ss_pred hhhccCCCCCccCCcCcceeeecccccceeeccccC-CCCCEEEEecCCCccccccchhhhhccccceeccccccchhhh
Q 048180 669 AFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNL-QNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKV 747 (824)
Q Consensus 669 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i 747 (824)
++ ..+++|++|++++|.-.. ++.+ ++|+.|+++++ .+..++. .+++|+.|++++| .++.+
T Consensus 292 -----l~----~~~~~L~~L~l~~N~l~~---i~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 292 -----LS----ELPPNLYYLNASSNEIRS---LCDLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp -----ES----CCCTTCCEEECCSSCCSE---ECCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCC
T ss_pred -----cc----CcCCcCCEEECcCCcCCc---ccCCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccc
Confidence 11 124789999998875433 2334 58999999884 5666643 2689999999988 45544
Q ss_pred hcccCCCCCCCcccccccCeEeccCCcchh--ccccCcccC-------------CCccEEEecCCCCcCCC
Q 048180 748 IEQDDDENSNPQVCWRSLRKLILSNLPELR--FMYSGEAQC-------------DFVQTIGIWSCCKLERF 803 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~--~~~~~~~~l-------------psL~~L~i~~C~~L~~l 803 (824)
+. .+++|++|+++++.-.. .+|.++..+ ++|+.|+++++ .+..+
T Consensus 353 p~-----------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~ 411 (454)
T 1jl5_A 353 PE-----------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREF 411 (454)
T ss_dssp CC-----------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred cc-----------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCcc
Confidence 41 46899999999984333 466666666 88999999985 46543
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=6.7e-20 Score=196.78 Aligned_cols=290 Identities=20% Similarity=0.159 Sum_probs=215.1
Q ss_pred CccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEeccc
Q 048180 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 525 (824)
.++.+.+.++.+..+|... .++|++|++++|. +..+++..+..+++|++|+|++|.+..+ |..++.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4688888888888887622 4789999999996 5566666679999999999999999777 66899999999999998
Q ss_pred ccccccCCC-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccc--cchhhhcCCCCCcEEEeecCccccc
Q 048180 526 CIYLTCLPS-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRN--FPLHLVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 526 c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~~~~~l~~L~~L~~L~l~~~~l~~~ 601 (824)
| .++.+|. +. ++|++|++++|.+..+|.. +.++++|++|++++|.+.. .++..++.+ +|++|++++|.+..+
T Consensus 112 n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 N-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp S-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred C-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 6 5667874 54 8999999999999988875 7899999999999998853 555667777 999999999987765
Q ss_pred cccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccC
Q 048180 602 PRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWL 681 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 681 (824)
+... .++|+.|++++|.+...+. ..+..
T Consensus 188 ~~~~--------------~~~L~~L~l~~n~i~~~~~--------------------------------------~~l~~ 215 (332)
T 2ft3_A 188 PKDL--------------PETLNELHLDHNKIQAIEL--------------------------------------EDLLR 215 (332)
T ss_dssp CSSS--------------CSSCSCCBCCSSCCCCCCT--------------------------------------TSSTT
T ss_pred Cccc--------------cCCCCEEECCCCcCCccCH--------------------------------------HHhcC
Confidence 4321 1578888888876654321 11123
Q ss_pred CcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCc
Q 048180 682 PWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQ 759 (824)
Q Consensus 682 ~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 759 (824)
+++|++|++++|.-.... .+..+++|+.|++++| .+..+|. .+..+++|+.|+++++ .++.++........ ..
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-~~ 290 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTN-NITKVGVNDFCPVG-FG 290 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSS-CCCBCCTTSSSCSS-CC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCC-CCCccChhHccccc-cc
Confidence 567888888887544333 4778999999999985 6677754 3778999999999988 46655532111100 11
Q ss_pred ccccccCeEeccCCcch--hccccCcccCCCccEEEecCCCC
Q 048180 760 VCWRSLRKLILSNLPEL--RFMYSGEAQCDFVQTIGIWSCCK 799 (824)
Q Consensus 760 ~~~p~L~~L~l~~~~~L--~~~~~~~~~lpsL~~L~i~~C~~ 799 (824)
..+++|+.|++.+++.. ...+..+..+++|+.|.+++|.+
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 23688999999999743 23355677899999999998753
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.7e-20 Score=196.72 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=76.5
Q ss_pred CccEEEeccCCCcC---CCC-ccCCCCccEEEcCC-CCCcccCChhhhcCCCCCcEEEecCCCCc-cccccccCcccccE
Q 048180 447 DVERVSLMGNNLRE---LRT-CPMFCKLTTLFLQG-NPLDLQLDNDFFNSFPNLKILNLSDTSMG-ILPKSLSSLKYLTV 520 (824)
Q Consensus 447 ~~~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~ 520 (824)
.++++++.++.+.. +|. +..+++|++|++++ |.....+|.. +..+++|++|+|++|.+. .+|..+..+.+|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45556665555542 332 45555555555553 4333344433 355555555555555553 44555555555555
Q ss_pred EecccccccccCC-CcccCCCccEEeccCCCCc-ccCcccccCC-CCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 521 LLLQNCIYLTCLP-SLAELVELMVLDVSGSGIA-EFPDGMNHLT-KLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 521 L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
|++++|.....+| .++++++|++|++++|.++ .+|..+..++ +|++|++++|.+....+..++.++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 5555544333444 2555555555555555555 5555555554 555555555555422223344444 5555555554
Q ss_pred c
Q 048180 598 L 598 (824)
Q Consensus 598 l 598 (824)
+
T Consensus 209 l 209 (313)
T 1ogq_A 209 L 209 (313)
T ss_dssp E
T ss_pred c
Confidence 3
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4e-20 Score=197.66 Aligned_cols=149 Identities=26% Similarity=0.410 Sum_probs=113.8
Q ss_pred CCccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 446 GDVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
..++.|++.++.+..+|. +..+++|++|++++|... .+|.. +..+++|++|+|++|.+..+|..++.+.+|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 467888888888887776 666888888888888644 67654 477888888888888888888888888888888888
Q ss_pred cccccccCCC-ccc---------CCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEee
Q 048180 525 NCIYLTCLPS-LAE---------LVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMI 594 (824)
Q Consensus 525 ~c~~~~~lp~-i~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~ 594 (824)
+|...+.+|. ++. +++|++|++++|.++.+|..++++++|++|++++|.+..+|+. ++++++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECc
Confidence 8777777773 544 7777777777777777777777777777777777777777654 6777777777777
Q ss_pred cCc
Q 048180 595 GCD 597 (824)
Q Consensus 595 ~~~ 597 (824)
+|.
T Consensus 238 ~n~ 240 (328)
T 4fcg_A 238 GCT 240 (328)
T ss_dssp TCT
T ss_pred CCc
Confidence 765
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.1e-20 Score=198.59 Aligned_cols=153 Identities=19% Similarity=0.323 Sum_probs=116.0
Q ss_pred CCccEEEcCCCCCcc--cCChhhhcCCCCCcEEEecC-CCC-ccccccccCcccccEEecccccccccCC-CcccCCCcc
Q 048180 468 CKLTTLFLQGNPLDL--QLDNDFFNSFPNLKILNLSD-TSM-GILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELM 542 (824)
Q Consensus 468 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~-~~~-~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~ 542 (824)
.+++.|++++|.... .+|.. +..+++|++|+|++ +.+ ..+|..++++++|++|++++|.....+| .++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578889998887655 66665 57888999999985 665 4778888888999999998876555777 488888999
Q ss_pred EEeccCCCCc-ccCcccccCCCCcEEeccCcccc-ccchhhhcCCC-CCcEEEeecCccccccccccchhhhhchHhhhc
Q 048180 543 VLDVSGSGIA-EFPDGMNHLTKLLFLNLSRTRVR-NFPLHLVTSLH-NLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRK 619 (824)
Q Consensus 543 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~-~~~~~~l~~L~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~ 619 (824)
+|++++|.+. .+|..+.++++|++|++++|.+. .+|. .+++++ +|++|++++|.+... .+..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~-----------~~~~~~~ 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGK-----------IPPTFAN 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEE-----------CCGGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeecc-----------CChHHhC
Confidence 9999888887 78888888888999998888886 4544 477887 888888888875431 1233455
Q ss_pred CCCccEEEEEecCcc
Q 048180 620 LRNLNVFDFTFVSLQ 634 (824)
Q Consensus 620 L~~L~~L~l~~~~~~ 634 (824)
++ |+.|+++.|.+.
T Consensus 197 l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLE 210 (313)
T ss_dssp CC-CSEEECCSSEEE
T ss_pred Cc-ccEEECcCCccc
Confidence 55 777777766544
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3.9e-19 Score=190.62 Aligned_cols=289 Identities=16% Similarity=0.122 Sum_probs=207.3
Q ss_pred CccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEeccc
Q 048180 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 525 (824)
.++.+++.++.+..+|... .+++++|++++|. +..++...+..+++|++|+|++|.+..+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4677888888887777521 3688999999886 5666666678899999999999998777 67889999999999998
Q ss_pred ccccccCCC-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccc--cchhhhcCCCCCcEEEeecCccccc
Q 048180 526 CIYLTCLPS-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRN--FPLHLVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 526 c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~~~~l~~L~~L~~L~l~~~~l~~~ 601 (824)
| .++.+|. +. ++|++|++++|.+..++. .+.++++|++|++++|.+.. ..+..++++++|++|++++|.+..+
T Consensus 110 n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 N-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp S-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred C-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 6 4667774 44 789999999998887776 47889999999999988743 4455688899999999999887665
Q ss_pred cccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccC
Q 048180 602 PRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWL 681 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 681 (824)
+... .++|+.|++++|.+...+.. .+..
T Consensus 187 ~~~~--------------~~~L~~L~l~~n~l~~~~~~--------------------------------------~~~~ 214 (330)
T 1xku_A 187 PQGL--------------PPSLTELHLDGNKITKVDAA--------------------------------------SLKG 214 (330)
T ss_dssp CSSC--------------CTTCSEEECTTSCCCEECTG--------------------------------------GGTT
T ss_pred Cccc--------------cccCCEEECCCCcCCccCHH--------------------------------------HhcC
Confidence 4321 16788888888776543110 0123
Q ss_pred CcCcceeeecccccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCc
Q 048180 682 PWNTSELLLVHCNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQ 759 (824)
Q Consensus 682 ~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 759 (824)
+++|++|++++|.-.... .+..+++|+.|++++| .+..+|. .+..+++|+.|++++| .++.++....... ...
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~-~~~ 289 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN-NISAIGSNDFCPP-GYN 289 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-CCCCCCTTSSSCS-SCC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCCh--hhccCCCcCEEECCCC-cCCccChhhcCCc-ccc
Confidence 466778888776544333 4677899999999986 5666643 3678999999999988 4665553221100 011
Q ss_pred ccccccCeEeccCCcchh--ccccCcccCCCccEEEecCC
Q 048180 760 VCWRSLRKLILSNLPELR--FMYSGEAQCDFVQTIGIWSC 797 (824)
Q Consensus 760 ~~~p~L~~L~l~~~~~L~--~~~~~~~~lpsL~~L~i~~C 797 (824)
..+++|+.|++.+++-.. .-|..+..+++|+.++++++
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 236889999999986321 22455677888999998875
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=3.2e-19 Score=205.36 Aligned_cols=268 Identities=20% Similarity=0.132 Sum_probs=202.4
Q ss_pred CccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccc
Q 048180 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c 526 (824)
.++.+++.++.+..+|.... ++|++|++++|. +..+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 57889999999988887222 789999999986 556775 57889999999999988887 7789999999986
Q ss_pred cccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccccc
Q 048180 527 IYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLM 606 (824)
Q Consensus 527 ~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~ 606 (824)
.++.+|. .+.+|++|++++|+++.+|.. +++|++|++++|.+..+|. .+.+|+.|++++|.+..++
T Consensus 112 -~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~---- 177 (622)
T 3g06_A 112 -PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP---- 177 (622)
T ss_dssp -CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----
T ss_pred -cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc----
Confidence 5677776 678899999999999988875 4889999999998887764 3578889999988766542
Q ss_pred chhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcc
Q 048180 607 QEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTS 686 (824)
Q Consensus 607 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 686 (824)
..+++|+.|++++|.+..++. .+++|+
T Consensus 178 -----------~~~~~L~~L~Ls~N~l~~l~~------------------------------------------~~~~L~ 204 (622)
T 3g06_A 178 -----------MLPSGLQELSVSDNQLASLPT------------------------------------------LPSELY 204 (622)
T ss_dssp -----------CCCTTCCEEECCSSCCSCCCC------------------------------------------CCTTCC
T ss_pred -----------ccCCCCcEEECCCCCCCCCCC------------------------------------------ccchhh
Confidence 235778888888776654321 135677
Q ss_pred eeeecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccC
Q 048180 687 ELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLR 766 (824)
Q Consensus 687 ~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~ 766 (824)
.|.+.+|.....+ ..+++|+.|++++| .+..++ ..+++|+.|++++| .++.++. .+++|+
T Consensus 205 ~L~L~~N~l~~l~--~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~ 264 (622)
T 3g06_A 205 KLWAYNNRLTSLP--ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM-----------LPSGLL 264 (622)
T ss_dssp EEECCSSCCSSCC--CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-----------CCTTCC
T ss_pred EEECcCCcccccC--CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc-----------ccccCc
Confidence 7777766433211 23578999999885 666664 35789999999988 5665552 568999
Q ss_pred eEeccCCcchhccccCcccCCCccEEEecCCCCcCCCCccccccc
Q 048180 767 KLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKLERFPISLWVEN 811 (824)
Q Consensus 767 ~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~ 811 (824)
.|++++| .+..+|..+..+++|+.|++++|+--...|..+..++
T Consensus 265 ~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 265 SLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999998 6888998899999999999999764444454444443
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.4e-19 Score=206.43 Aligned_cols=261 Identities=23% Similarity=0.170 Sum_probs=196.4
Q ss_pred CceecCCcccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 427 PWFFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
..+...+..+..+|.. ...+++.|++.+|.+..+|. .+++|++|++++|. +..+|. .+++|++|+|++|.+.
T Consensus 43 ~~L~ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 43 AVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CEEECCSSCCSCCCSC-CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCCCC
T ss_pred cEEEecCCCcCccChh-hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCcCC
Confidence 4455666777777763 44789999999999988887 67899999999996 556775 6789999999999998
Q ss_pred cccccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCC
Q 048180 507 ILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLH 586 (824)
Q Consensus 507 ~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~ 586 (824)
.+|. .+.+|++|++++| .++.+|.. +++|++|++++|+++.+|. .+.+|+.|++++|.+..+| ..++
T Consensus 115 ~l~~---~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~----~~~~ 181 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP----MLPS 181 (622)
T ss_dssp CCCC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred CCCC---CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc----ccCC
Confidence 8887 6788999999986 46777752 4889999999999998886 3567899999999988887 4578
Q ss_pred CCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCcccccc
Q 048180 587 NLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGN 666 (824)
Q Consensus 587 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 666 (824)
+|+.|++++|.+..++. .+++|+.|++++|.+..++.
T Consensus 182 ~L~~L~Ls~N~l~~l~~---------------~~~~L~~L~L~~N~l~~l~~---------------------------- 218 (622)
T 3g06_A 182 GLQELSVSDNQLASLPT---------------LPSELYKLWAYNNRLTSLPA---------------------------- 218 (622)
T ss_dssp TCCEEECCSSCCSCCCC---------------CCTTCCEEECCSSCCSSCCC----------------------------
T ss_pred CCcEEECCCCCCCCCCC---------------ccchhhEEECcCCcccccCC----------------------------
Confidence 89999999988665432 23678888888776654321
Q ss_pred chhhhccCCCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhh
Q 048180 667 TLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEK 746 (824)
Q Consensus 667 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 746 (824)
.+++|++|++++|. ++.++ ..+++|+.|++++| .+..+|. .+++|+.|++++| .++.
T Consensus 219 --------------~~~~L~~L~Ls~N~-L~~lp-~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 219 --------------LPSGLKELIVSGNR-LTSLP-VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp --------------CCTTCCEEECCSSC-CSCCC-CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCS
T ss_pred --------------CCCCCCEEEccCCc-cCcCC-CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCc
Confidence 13567777777664 33233 45688999999885 6777754 4789999999988 5655
Q ss_pred hhcccCCCCCCCcccccccCeEeccCCcchhccccC
Q 048180 747 VIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSG 782 (824)
Q Consensus 747 i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~ 782 (824)
++. .+..+++|+.|+|++++--...+..
T Consensus 276 lp~--------~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 276 LPE--------SLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCG--------GGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCH--------HHhhccccCEEEecCCCCCCcCHHH
Confidence 553 4557899999999998644444443
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=7.3e-19 Score=206.43 Aligned_cols=381 Identities=17% Similarity=0.133 Sum_probs=220.9
Q ss_pred ceecCCcccceeecc--ccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCC
Q 048180 428 WFFKPGRRLRKFVYE--DWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDT 503 (824)
Q Consensus 428 ~~~~~~~~~~~~~~~--~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 503 (824)
.+..++..++.++.. .....++.|++++|.+..++. +.++++|++|++++|. +..+|+..|.++++|++|+|++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTS
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCC
Confidence 344556667777754 335689999999999998876 8899999999999996 77888888999999999999999
Q ss_pred CCccccc-cccCcccccEEecccccccc-cCCC-cccCCCccEEeccCCCCcccCc-ccccCCCCc----EEeccCcccc
Q 048180 504 SMGILPK-SLSSLKYLTVLLLQNCIYLT-CLPS-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLL----FLNLSRTRVR 575 (824)
Q Consensus 504 ~~~~lp~-~i~~l~~L~~L~L~~c~~~~-~lp~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~----~L~l~~~~~~ 575 (824)
.+..+|. .++++.+|++|++++|.... .+|. ++++++|++|++++|+++.++. .+..+.+++ .++++.+.+.
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 9998886 58999999999999975322 3454 8999999999999998886543 333222221 2222222211
Q ss_pred ccchh------------------------h--------------------------------------------------
Q 048180 576 NFPLH------------------------L-------------------------------------------------- 581 (824)
Q Consensus 576 ~~~~~------------------------~-------------------------------------------------- 581 (824)
.++++ .
T Consensus 215 ~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~ 294 (635)
T 4g8a_A 215 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 294 (635)
T ss_dssp EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred ccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 11000 0
Q ss_pred -----------------------------hcCCCCCcEEEeecCccccccccccc--------hhhhhchHhhhcCCCcc
Q 048180 582 -----------------------------VTSLHNLQEFSMIGCDLLCLPRSLMQ--------EDYAAFIEDVRKLRNLN 624 (824)
Q Consensus 582 -----------------------------l~~L~~L~~L~l~~~~l~~~~~~~~~--------~~~~~~~~~l~~L~~L~ 624 (824)
+....+|+.|++.+|.+..++..... ............+++|+
T Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~ 374 (635)
T 4g8a_A 295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 374 (635)
T ss_dssp EEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCC
T ss_pred ccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccc
Confidence 11122333344333332221110000 00000001112344444
Q ss_pred EEEEEecCccchhhh-hhhhhcccceeEEEEeccCCCc--------cccccchh---hhccCCCCCccCCcCcceeeecc
Q 048180 625 VFDFTFVSLQSFKEY-ISSQHWLWLQSYKFSVGALGKG--------KLRGNTLA---FMKEFPNDPIWLPWNTSELLLVH 692 (824)
Q Consensus 625 ~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~~---~~~~l~~~~~~~~~~L~~L~l~~ 692 (824)
.|+++.|.+...... ........|+.+.+........ .+...... .....+...+....+++.++++.
T Consensus 375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred cchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 554444433211000 0011122333333222111000 00000000 00000111223445566666665
Q ss_pred cccceee--ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEec
Q 048180 693 CNAVTQM--TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLIL 770 (824)
Q Consensus 693 ~~~~~~~--~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l 770 (824)
+...... .+..+++|+.|+++++......++ ..+..+++|+.|+|++| .++.++. ..+..+++|++|+|
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N-~L~~l~~-------~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNM 525 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEEC
T ss_pred cccccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCC-ccCCcCh-------HHHcCCCCCCEEEC
Confidence 5433322 345678888888887655554433 34677888888888887 4554432 24557888999999
Q ss_pred cCCcchhcccc-CcccCCCccEEEecCCCCcCCCCc-ccccc-ccceeccCCC
Q 048180 771 SNLPELRFMYS-GEAQCDFVQTIGIWSCCKLERFPI-SLWVE-NYAQKLKSPC 820 (824)
Q Consensus 771 ~~~~~L~~~~~-~~~~lpsL~~L~i~~C~~L~~lp~-~~~~l-~~L~~L~~~~ 820 (824)
+++ ++..++. .+..+++|+.|+++++ ++..+|. .+.++ ++|+.|++.+
T Consensus 526 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 526 SHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 888 5776644 4678889999999885 6666644 56666 6888888864
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=194.40 Aligned_cols=266 Identities=19% Similarity=0.184 Sum_probs=154.6
Q ss_pred EEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc-ccccCcccccEEeccccccc
Q 048180 451 VSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP-KSLSSLKYLTVLLLQNCIYL 529 (824)
Q Consensus 451 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~c~~~ 529 (824)
.+..++.++.+|.. -.++|++|++++|. +..++...+.++++|++|++++|.+..++ ..+..+.+|++|++++| .+
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 112 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cC
Confidence 55556666666541 12466667776664 44455544566666777777666665553 34666666666666664 34
Q ss_pred ccCC-C-cccCCCccEEeccCCCCcccCc--ccccCCCCcEEeccCc-cccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 530 TCLP-S-LAELVELMVLDVSGSGIAEFPD--GMNHLTKLLFLNLSRT-RVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 530 ~~lp-~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~-~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
+.+| . ++++++|++|++++|.++.+|. .+.++++|++|++++| .+..+++..++++++|++|++++|.+....
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 190 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-- 190 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC--
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC--
Confidence 4455 2 6666666666666666666665 4566666666666666 345555545666666666666666543321
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcC
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWN 684 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 684 (824)
+..++.+++|+.|+++.|.+...+...
T Consensus 191 ---------~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------- 217 (353)
T 2z80_A 191 ---------PKSLKSIQNVSHLILHMKQHILLLEIF-------------------------------------------- 217 (353)
T ss_dssp ---------TTTTTTCSEEEEEEEECSCSTTHHHHH--------------------------------------------
T ss_pred ---------HHHHhccccCCeecCCCCccccchhhh--------------------------------------------
Confidence 223555566666666655543332211
Q ss_pred cceeeecccccceeeccccCCCCCEEEEecCCCccccccch--hhhhccccceecccccc----chhhhhcccCCCCCCC
Q 048180 685 TSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYG--VWCCLRNLEELVIANCR----NLEKVIEQDDDENSNP 758 (824)
Q Consensus 685 L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~--~l~~l~~L~~L~l~~~~----~l~~i~~~~~~~~~~~ 758 (824)
+..+++|+.|+++++ .+...+... .....+.++.++++++. .+..++. .
T Consensus 218 ----------------~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~--------~ 272 (353)
T 2z80_A 218 ----------------VDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK--------L 272 (353)
T ss_dssp ----------------HHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH--------H
T ss_pred ----------------hhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHH--------H
Confidence 223466666666664 333332111 12234556666666542 1223332 2
Q ss_pred cccccccCeEeccCCcchhccccCc-ccCCCccEEEecCCCCc
Q 048180 759 QVCWRSLRKLILSNLPELRFMYSGE-AQCDFVQTIGIWSCCKL 800 (824)
Q Consensus 759 ~~~~p~L~~L~l~~~~~L~~~~~~~-~~lpsL~~L~i~~C~~L 800 (824)
+..+++|++|+++++ .+..+|..+ ..+++|++|++++++-.
T Consensus 273 l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 273 LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 346789999999988 677888774 78999999999987533
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=190.32 Aligned_cols=265 Identities=20% Similarity=0.181 Sum_probs=197.2
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. .....+++|++.+|.+..++. +..+++|++|++++|. +..+++..|..+++|++|+|++|.+.
T Consensus 36 c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4445666777776 455689999999999988876 8899999999999996 55566566789999999999999998
Q ss_pred ccccc-ccCcccccEEecccccccccCCC---cccCCCccEEeccCC-CCcccC-cccccCCCCcEEeccCccccccchh
Q 048180 507 ILPKS-LSSLKYLTVLLLQNCIYLTCLPS---LAELVELMVLDVSGS-GIAEFP-DGMNHLTKLLFLNLSRTRVRNFPLH 580 (824)
Q Consensus 507 ~lp~~-i~~l~~L~~L~L~~c~~~~~lp~---i~~L~~L~~L~l~~~-~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~ 580 (824)
.+|.. ++.+++|++|++++| .++.+|. ++++++|++|++++| .+..++ ..+.++++|++|++++|.+..+++.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 88876 789999999999986 4566663 889999999999998 577664 5788999999999999999888666
Q ss_pred hhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCC
Q 048180 581 LVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGK 660 (824)
Q Consensus 581 ~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 660 (824)
.++++++|++|++++|.+..++ ...+..+++|+.|++++|.+...+...
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~-----------~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------- 241 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLL-----------EIFVDVTSSVECLELRDTDLDTFHFSE-------------------- 241 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHH-----------HHHHHHTTTEEEEEEESCBCTTCCCC---------------------
T ss_pred HHhccccCCeecCCCCccccch-----------hhhhhhcccccEEECCCCccccccccc--------------------
Confidence 7899999999999998754332 122455789999999888765321000
Q ss_pred ccccccchhhhccCCCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecCCC----ccccccchhhhhcccccee
Q 048180 661 GKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEG----LKYLFKYGVWCCLRNLEEL 736 (824)
Q Consensus 661 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~----l~~l~~~~~l~~l~~L~~L 736 (824)
+. .....+.++.+++.++.- +..++ ..+..+++|+.|
T Consensus 242 ------------------------l~-------------~~~~~~~l~~l~L~~~~l~~~~l~~l~--~~l~~l~~L~~L 282 (353)
T 2z80_A 242 ------------------------LS-------------TGETNSLIKKFTFRNVKITDESLFQVM--KLLNQISGLLEL 282 (353)
T ss_dssp ------------------------------------------CCCCCCEEEEESCBCCHHHHHHHH--HHHHTCTTCCEE
T ss_pred ------------------------cc-------------cccccchhhccccccccccCcchhhhH--HHHhcccCCCEE
Confidence 00 011234566666665421 11232 346789999999
Q ss_pred ccccccchhhhhcccCCCCCCCcccccccCeEeccCCc
Q 048180 737 VIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLP 774 (824)
Q Consensus 737 ~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~ 774 (824)
++++| .++.++.. .+..+++|++|++++++
T Consensus 283 ~Ls~N-~l~~i~~~-------~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 283 EFSRN-QLKSVPDG-------IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ECCSS-CCCCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred ECCCC-CCCccCHH-------HHhcCCCCCEEEeeCCC
Confidence 99988 55555521 13578999999999985
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=3.6e-20 Score=197.36 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=92.1
Q ss_pred ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccE
Q 048180 464 CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMV 543 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~ 543 (824)
+..+++|++|++++|. +..+++..+..+++|++|+|++|.+...++ +..+.+|++|++++|. ++.+| .+++|++
T Consensus 30 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE---ECTTCCE
T ss_pred hccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc---CCCCcCE
Confidence 3445567777777764 444555556677777777777777655554 6677777777777653 33333 3366777
Q ss_pred EeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhh-hcCCC
Q 048180 544 LDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDV-RKLRN 622 (824)
Q Consensus 544 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l-~~L~~ 622 (824)
|++++|.+..+|.. .+++|++|++++|.+..+++..++.+++|++|++++|.+...+ +..+ ..+++
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~ 170 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-----------FAELAASSDT 170 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-----------GGGGGGGTTT
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-----------HHHHhhccCc
Confidence 77777766665543 3566777777777766665555666677777777766544321 1122 34566
Q ss_pred ccEEEEEecCcc
Q 048180 623 LNVFDFTFVSLQ 634 (824)
Q Consensus 623 L~~L~l~~~~~~ 634 (824)
|+.|++++|.+.
T Consensus 171 L~~L~L~~N~l~ 182 (317)
T 3o53_A 171 LEHLNLQYNFIY 182 (317)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEEECCCCcCc
Confidence 666666655543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.7e-18 Score=181.54 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=122.4
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEeccccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCI 527 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~ 527 (824)
+.++..++.+..+|. .-.++|++|++++|. +..++...|..+++|++|++++|.+..+ |..+..+.+|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 566666666776664 224678888888875 4556655567888888888888887666 5577888888888888876
Q ss_pred ccccC-C-CcccCCCccEEeccCCCCccc-CcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 528 YLTCL-P-SLAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 528 ~~~~l-p-~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
.++.+ | .+.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+++..++++++|++|++++|.+..++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE- 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-
Confidence 56666 3 377888888888888887766 4457778888888888888777776667778888888888776554321
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
..+..+++|+.|++++|.+.
T Consensus 171 ----------~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 171 ----------RAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCC
T ss_pred ----------HHhcCccccCEEECCCCccc
Confidence 12555666777666665443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.6e-19 Score=192.36 Aligned_cols=267 Identities=14% Similarity=0.036 Sum_probs=173.8
Q ss_pred ccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc-ccccCcccccEEecccccccccCCCcccCCCccEEeccC
Q 048180 470 LTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP-KSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSG 548 (824)
Q Consensus 470 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~ 548 (824)
++.+++..+. ....+..++..+++|++|+|++|.+..++ ..+..+.+|++|+|++|. ++..+.++.+++|++|++++
T Consensus 12 l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCS
T ss_pred eeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcC
Confidence 3344444443 33444555677788999999999887765 478888999999998864 44444588888999999998
Q ss_pred CCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEE
Q 048180 549 SGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDF 628 (824)
Q Consensus 549 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 628 (824)
|.++.+|. +++|++|++++|.+..+++. .+++|++|++++|.+...+. ..++.+++|+.|++
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~L 151 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD-----------LDEGCRSRVQYLDL 151 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG-----------BCTGGGSSEEEEEC
T ss_pred CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc-----------hhhhccCCCCEEEC
Confidence 88877663 47889999998888777653 46788999998887665422 23567788888888
Q ss_pred EecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceeeccccCCCCC
Q 048180 629 TFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLK 708 (824)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~ 708 (824)
++|.+...+..... ..+++|++|++++|.-........+++|+
T Consensus 152 s~N~l~~~~~~~~~-------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~l~~L~ 194 (317)
T 3o53_A 152 KLNEIDTVNFAELA-------------------------------------ASSDTLEHLNLQYNFIYDVKGQVVFAKLK 194 (317)
T ss_dssp TTSCCCEEEGGGGG-------------------------------------GGTTTCCEEECTTSCCCEEECCCCCTTCC
T ss_pred CCCCCCcccHHHHh-------------------------------------hccCcCCEEECCCCcCcccccccccccCC
Confidence 88876653211100 11345666666665533333344467777
Q ss_pred EEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcch-hccccCcccCC
Q 048180 709 FLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPEL-RFMYSGEAQCD 787 (824)
Q Consensus 709 ~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L-~~~~~~~~~lp 787 (824)
.|++++| .+..+++. +..+++|+.|++++| .++.++. .+..+++|+.|++++++-. ..++..+..++
T Consensus 195 ~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 195 TLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp EEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred EEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 7777763 45555432 556777777777766 4444432 2345677777777776543 34455566677
Q ss_pred CccEEEecCCCCcCCCCc
Q 048180 788 FVQTIGIWSCCKLERFPI 805 (824)
Q Consensus 788 sL~~L~i~~C~~L~~lp~ 805 (824)
.|+.|.+.+|+.++..+.
T Consensus 263 ~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHHHHSSSS
T ss_pred cceEEECCCchhccCCch
Confidence 777777766655554433
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.4e-19 Score=203.88 Aligned_cols=333 Identities=15% Similarity=0.077 Sum_probs=208.6
Q ss_pred CCccEEEeccCCCcC-----CCC-ccCCCCccEEEcCCCCCcccCChhhhcCCC----CCcEEEecCCCCc-----cccc
Q 048180 446 GDVERVSLMGNNLRE-----LRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFP----NLKILNLSDTSMG-----ILPK 510 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~Lr~L~L~~~~~~-----~lp~ 510 (824)
..++++++.+|.+.. ++. +..+++|++|++++|......+..++..++ +|++|+|++|.+. .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 467888888887663 233 566788999999888644333444445555 6899999988875 4577
Q ss_pred cccCcccccEEecccccccccCC-Cc-----ccCCCccEEeccCCCCcc-----cCcccccCCCCcEEeccCccccccch
Q 048180 511 SLSSLKYLTVLLLQNCIYLTCLP-SL-----AELVELMVLDVSGSGIAE-----FPDGMNHLTKLLFLNLSRTRVRNFPL 579 (824)
Q Consensus 511 ~i~~l~~L~~L~L~~c~~~~~lp-~i-----~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~~~ 579 (824)
.+..+++|++|++++|......+ .+ ..+++|++|++++|.++. ++..+..+++|++|++++|.+.....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 78888899999998875322212 12 235678999998888774 45567778889999998888744322
Q ss_pred hhhc-----CCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhh--hhh--hhhccccee
Q 048180 580 HLVT-----SLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKE--YIS--SQHWLWLQS 650 (824)
Q Consensus 580 ~~l~-----~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~--~~~--~~~~~~L~~ 650 (824)
..+. .+++|++|++++|.+... +.......+..+++|+.|+++.|.+..... ... .....+|+.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSD-------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTT-------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHH-------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 2222 366889999988865432 112335567778889999988887654311 111 113567888
Q ss_pred EEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceee--cc-----ccCCCCCEEEEecCCCcccccc
Q 048180 651 YKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM--TI-----PNLQNLKFLEIFNCEGLKYLFK 723 (824)
Q Consensus 651 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~l-----~~l~~L~~L~L~~c~~l~~l~~ 723 (824)
|.++.+.+...... .++. .....++|++|++++|.-.... .+ ...++|+.|++++|. +.....
T Consensus 261 L~L~~n~l~~~~~~--------~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 330 (461)
T 1z7x_W 261 LWIWECGITAKGCG--------DLCR-VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC 330 (461)
T ss_dssp EECTTSCCCHHHHH--------HHHH-HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred EECcCCCCCHHHHH--------HHHH-HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH
Confidence 87765544221100 0000 0112467888998887532211 11 223689999998874 333210
Q ss_pred ---chhhhhccccceeccccccchhhhhcc-cCCCCCCCcccccccCeEeccCCcchh-----ccccCcccCCCccEEEe
Q 048180 724 ---YGVWCCLRNLEELVIANCRNLEKVIEQ-DDDENSNPQVCWRSLRKLILSNLPELR-----FMYSGEAQCDFVQTIGI 794 (824)
Q Consensus 724 ---~~~l~~l~~L~~L~l~~~~~l~~i~~~-~~~~~~~~~~~~p~L~~L~l~~~~~L~-----~~~~~~~~lpsL~~L~i 794 (824)
...+..+++|+.|++++| .+...... ..... ....++|++|++++| .+. .++..+..+++|++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l---~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGL---GQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHH---TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHH---cCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEEC
Confidence 124566789999999888 45443211 00000 002578999999988 454 56767777899999999
Q ss_pred cCCCCcC
Q 048180 795 WSCCKLE 801 (824)
Q Consensus 795 ~~C~~L~ 801 (824)
++| .+.
T Consensus 406 ~~N-~i~ 411 (461)
T 1z7x_W 406 SNN-CLG 411 (461)
T ss_dssp CSS-SCC
T ss_pred CCC-CCC
Confidence 887 444
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=188.35 Aligned_cols=147 Identities=24% Similarity=0.318 Sum_probs=68.2
Q ss_pred EEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc-ccccCcccccEEecccccc
Q 048180 450 RVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP-KSLSSLKYLTVLLLQNCIY 528 (824)
Q Consensus 450 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~c~~ 528 (824)
.+...+..+..+|... .++++.|++++|. +..++...|.++++|++|+|++|.+..++ ..+..+.+|++|+|++| .
T Consensus 47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-STNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-c
Confidence 3344444444444311 1345555555553 33333333445555555555555554443 23445555555555553 2
Q ss_pred cccCC--CcccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCc-cccccchhhhcCCCCCcEEEeecCccc
Q 048180 529 LTCLP--SLAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRT-RVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 529 ~~~lp--~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~-~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
++.+| .+.++++|++|++++|.++.+|. .+.++++|++|++++| .+..+++..+.++++|++|++++|.+.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 33333 14555555555555555554443 3445555555555542 224444444455555555555555433
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.3e-17 Score=186.82 Aligned_cols=169 Identities=21% Similarity=0.295 Sum_probs=85.4
Q ss_pred EEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc-ccccCcccccEEecccccc
Q 048180 450 RVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP-KSLSSLKYLTVLLLQNCIY 528 (824)
Q Consensus 450 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~c~~ 528 (824)
.+...+..+..+|.. -.+++++|++++|. +..+++..|..+++|++|+|++|.+..++ ..+..+.+|++|+|++|.
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~- 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred EEEECCCCcCccCCC-CCCCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-
Confidence 344444444444431 11355555555554 33333333455555566666555554443 345555555666555542
Q ss_pred cccCC-C-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCc-cccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 529 LTCLP-S-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRT-RVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 529 ~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~-~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
++.+| . ++++++|++|++++|.++.+|. .+.++++|++|++++| .+..++...+.++++|++|++++|.+..++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--
Confidence 33444 2 5555556666665555555544 3455555555555553 334444444555555666655555543321
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
.+..+++|+.|++++|.+.
T Consensus 213 -----------~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 213 -----------NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp -----------CCTTCTTCCEEECTTSCCS
T ss_pred -----------cccccccccEEECcCCcCc
Confidence 2344555555555555444
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=186.71 Aligned_cols=185 Identities=22% Similarity=0.323 Sum_probs=111.4
Q ss_pred CCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc
Q 048180 432 PGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP 509 (824)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp 509 (824)
.+..+..+|. ..+..++.|++.+|.+..++. +.++++|++|++++|. +..++...|.++++|++|+|++|.+..+|
T Consensus 51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeC
Confidence 3444555554 344566667777666666543 6666677777776664 44455555666677777777777666665
Q ss_pred c-cccCcccccEEecccccccccCC--CcccCCCccEEeccCC-CCcccCc-ccccCCCCcEEeccCccccccchhhhcC
Q 048180 510 K-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGS-GIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTS 584 (824)
Q Consensus 510 ~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~ 584 (824)
. .+..+.+|++|+|++|. ++.+| .+.++++|++|+++++ .+..+|. .+.++++|++|++++|.+..+|. +..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~ 205 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTP 205 (440)
T ss_dssp TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTT
T ss_pred HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCC
Confidence 5 46666777777776653 44444 2666777777777664 4555554 35666677777777776666653 566
Q ss_pred CCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecC
Q 048180 585 LHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVS 632 (824)
Q Consensus 585 L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 632 (824)
+++|++|++++|.+..++ ...+..+++|+.|+++.|.
T Consensus 206 l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIR-----------PGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp CSSCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTCC
T ss_pred CcccCEEECCCCccCccC-----------hhhhccCccCCEEECCCCc
Confidence 666777776666544331 2234555555555555443
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=5.3e-18 Score=177.73 Aligned_cols=194 Identities=22% Similarity=0.320 Sum_probs=161.7
Q ss_pred cCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC-Ccc
Q 048180 431 KPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS-MGI 507 (824)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~ 507 (824)
..+..+..+|. ..+..+++|++.++.+..++. +..+++|++|++++|. +..+++..+..+++|++|++++|. +..
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 34455666665 456789999999999988875 8899999999999996 555655567899999999999997 877
Q ss_pred c-cccccCcccccEEecccccccccCCC-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcC
Q 048180 508 L-PKSLSSLKYLTVLLLQNCIYLTCLPS-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTS 584 (824)
Q Consensus 508 l-p~~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~ 584 (824)
+ |..+..+.+|++|++++|......|. ++++++|++|++++|.++.+|.. +.++++|++|++++|.+..+++..+.+
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 7 66889999999999999764444454 99999999999999999988865 789999999999999999998877999
Q ss_pred CCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchh
Q 048180 585 LHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFK 637 (824)
Q Consensus 585 L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 637 (824)
+++|++|++++|.+.... +..+..+++|+.|++++|.+...+
T Consensus 176 l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVH-----------PHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CTTCCEEECCSSCCCEEC-----------TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccCEEECCCCcccccC-----------HhHccCcccccEeeCCCCcCCcCC
Confidence 999999999999865532 345778899999999988776543
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=6.1e-18 Score=179.22 Aligned_cols=145 Identities=21% Similarity=0.246 Sum_probs=83.5
Q ss_pred EEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc---cccccCcccccEEecccc
Q 048180 450 RVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL---PKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 450 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~L~~L~L~~c 526 (824)
.+...++.+..+|.. -.++|++|++++|. +..+|..+|.++++|++|+|++|.+..+ |..+..+.+|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 445555555555541 12456666666664 4455555556666666666666665443 344555666666666664
Q ss_pred cccccCC-CcccCCCccEEeccCCCCcccCc--ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 527 IYLTCLP-SLAELVELMVLDVSGSGIAEFPD--GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 527 ~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
.+..+| .+.++++|++|++++|.++.+|. .+..+++|++|++++|.+...++..++++++|++|++++|.
T Consensus 89 -~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 89 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp -SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred -ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 334445 36666666666666666665543 45566666666666666555544445666666666666654
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.7e-17 Score=175.72 Aligned_cols=193 Identities=23% Similarity=0.267 Sum_probs=156.1
Q ss_pred ecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcc--cCChhhhcCCCCCcEEEecCCCC
Q 048180 430 FKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDL--QLDNDFFNSFPNLKILNLSDTSM 505 (824)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~ 505 (824)
...+..+..+|. ..+..+++|++.+|.+..++. +..+++|++|++++|.... ..+.. +..+++|++|+|++|.+
T Consensus 13 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 13 RCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp ECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSE
T ss_pred EcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcc
Confidence 334555666776 455789999999999999886 7899999999999996431 12444 46799999999999999
Q ss_pred ccccccccCcccccEEecccccccccCC---CcccCCCccEEeccCCCCcc-cCcccccCCCCcEEeccCccccc-cchh
Q 048180 506 GILPKSLSSLKYLTVLLLQNCIYLTCLP---SLAELVELMVLDVSGSGIAE-FPDGMNHLTKLLFLNLSRTRVRN-FPLH 580 (824)
Q Consensus 506 ~~lp~~i~~l~~L~~L~L~~c~~~~~lp---~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~-~~~~ 580 (824)
..+|..+..+.+|++|++++|. ++.+| .+.++++|++|++++|.+.. .|..+..+++|++|++++|.+.. ..+.
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 9999999999999999999975 44444 48999999999999999884 45568899999999999999865 3344
Q ss_pred hhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 581 LVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 581 ~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
.+..+++|++|++++|.+...+ +..+..+++|+.|++++|.+...
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLS-----------PTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTSCCSBC
T ss_pred HHhhCcCCCEEECCCCCcCCcC-----------HHHhcCCCCCCEEECCCCccCcc
Confidence 5899999999999999866542 33577888999999988876543
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=3e-17 Score=183.99 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=160.3
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. ..+..++.|++.+|.+..++. +..+++|+.|++++|. +..+++..|.++++|++|+|++|.+.
T Consensus 59 v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 59 VVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCC
Confidence 3344556666775 456789999999999988754 8899999999999996 55666666899999999999999998
Q ss_pred ccccc-ccCcccccEEecccccccccCC--CcccCCCccEEeccCC-CCcccCc-ccccCCCCcEEeccCccccccchhh
Q 048180 507 ILPKS-LSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGS-GIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHL 581 (824)
Q Consensus 507 ~lp~~-i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~ 581 (824)
.+|.. +..+.+|++|+|++|. ++.+| .+.++++|++|++++| .+..+|. .+..+++|++|++++|.+..+|.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-- 213 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-- 213 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--
T ss_pred ccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--
Confidence 88875 7899999999999975 56666 3999999999999996 7778876 48899999999999999988864
Q ss_pred hcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 582 VTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 582 l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
+..+++|++|++++|.+..++ ...+..+++|+.|++++|.+...
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIR-----------PGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEEC-----------GGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccEEECcCCcCcccC-----------cccccCccCCCEEEeCCCcCceE
Confidence 889999999999999876542 34578899999999998877643
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.9e-18 Score=194.86 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=99.9
Q ss_pred CCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccEEe
Q 048180 466 MFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLD 545 (824)
Q Consensus 466 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~ 545 (824)
.+++|++|++++|. +..+++..|..+++|++|+|++|.+...++ ++.+++|++|+|++| .++.+| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC---CCCCcCEEE
Confidence 34477888888775 444555556777888888888887765554 777778888888776 344443 236777778
Q ss_pred ccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhh-cCCCcc
Q 048180 546 VSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVR-KLRNLN 624 (824)
Q Consensus 546 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~ 624 (824)
+++|.+..+|.. .+++|++|++++|.+..+++..++++++|++|++++|.+...+ +..+. .+++|+
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~L~ 172 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-----------FAELAASSDTLE 172 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-----------GGGGGGGTTTCC
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-----------hHHHhhhCCccc
Confidence 877777766553 4677777777777777666655777777777777777654421 22233 566777
Q ss_pred EEEEEecCcc
Q 048180 625 VFDFTFVSLQ 634 (824)
Q Consensus 625 ~L~l~~~~~~ 634 (824)
.|++++|.+.
T Consensus 173 ~L~Ls~N~l~ 182 (487)
T 3oja_A 173 HLNLQYNFIY 182 (487)
T ss_dssp EEECTTSCCC
T ss_pred EEecCCCccc
Confidence 7777666554
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=9.1e-19 Score=186.00 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=111.2
Q ss_pred CCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc--ccccccc-------CcccccEEecccccccccCCC-c
Q 048180 466 MFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG--ILPKSLS-------SLKYLTVLLLQNCIYLTCLPS-L 535 (824)
Q Consensus 466 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~i~-------~l~~L~~L~L~~c~~~~~lp~-i 535 (824)
..++|+.|++++|.. .+|..+... |+.|+|+++.+. .+|..+. .+.+|++|++++|.....+|. +
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 445677788888764 677765433 788888888774 3555554 688888888888765556773 4
Q ss_pred --ccCCCccEEeccCCCCcccCcccccC-----CCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccch
Q 048180 536 --AELVELMVLDVSGSGIAEFPDGMNHL-----TKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQE 608 (824)
Q Consensus 536 --~~L~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~ 608 (824)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|.+..+++..++++++|++|++++|.+...
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------- 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE------- 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH-------
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc-------
Confidence 88888888888888888778777776 8888888888888888766688888888888888763321
Q ss_pred hhhhchHhh--hcCCCccEEEEEecCccc
Q 048180 609 DYAAFIEDV--RKLRNLNVFDFTFVSLQS 635 (824)
Q Consensus 609 ~~~~~~~~l--~~L~~L~~L~l~~~~~~~ 635 (824)
...+..+ +.+++|+.|++++|.+..
T Consensus 189 --~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 189 --RGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp --HHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred --hHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 0112233 566777777777666553
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=6.1e-19 Score=198.62 Aligned_cols=351 Identities=16% Similarity=0.165 Sum_probs=234.3
Q ss_pred CCccEEEeccCCCcCCCC---ccCCCCccEEEcCCCCCcc----cCChhhhcCCCCCcEEEecCCCCccc-cccc-cCcc
Q 048180 446 GDVERVSLMGNNLRELRT---CPMFCKLTTLFLQGNPLDL----QLDNDFFNSFPNLKILNLSDTSMGIL-PKSL-SSLK 516 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~----~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i-~~l~ 516 (824)
..+++|++.++.+...+. +..+++|++|++++|.... .++ ..+..+++|++|+|++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 467899999888765432 6678899999999997432 223 3467889999999999998542 2222 3344
Q ss_pred ----cccEEecccccccc----cCC-CcccCCCccEEeccCCCCccc-Cccc-----ccCCCCcEEeccCccccccc---
Q 048180 517 ----YLTVLLLQNCIYLT----CLP-SLAELVELMVLDVSGSGIAEF-PDGM-----NHLTKLLFLNLSRTRVRNFP--- 578 (824)
Q Consensus 517 ----~L~~L~L~~c~~~~----~lp-~i~~L~~L~~L~l~~~~l~~l-p~~i-----~~L~~L~~L~l~~~~~~~~~--- 578 (824)
+|++|++++|.... .+| .+.++++|++|++++|.+... +..+ ...++|++|++++|.+....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999985331 446 488999999999999988632 2222 23568999999999885532
Q ss_pred -hhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhh-cCCCccEEEEEecCccch-----hhhhhhhhcccceeE
Q 048180 579 -LHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVR-KLRNLNVFDFTFVSLQSF-----KEYISSQHWLWLQSY 651 (824)
Q Consensus 579 -~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L 651 (824)
+..+..+++|++|++++|.+... +.......+. ..++|+.|++++|.+... +..+ ..+++|+.|
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L 232 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEA-------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKASLREL 232 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHH-------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEE
T ss_pred HHHHHhhCCCCCEEECcCCCcchH-------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEE
Confidence 23467889999999999874331 1111222232 366999999999988753 3332 356789999
Q ss_pred EEEeccCCCccccccchhhhccCCCCCccCCcCcceeeeccccccee----e--ccccCCCCCEEEEecCCCccccccch
Q 048180 652 KFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQ----M--TIPNLQNLKFLEIFNCEGLKYLFKYG 725 (824)
Q Consensus 652 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~----~--~l~~l~~L~~L~L~~c~~l~~l~~~~ 725 (824)
+++.+.++.... ..+........++|++|++++|.-... + .+..+++|+.|++++| .+.......
T Consensus 233 ~Ls~n~l~~~~~--------~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~ 303 (461)
T 1z7x_W 233 ALGSNKLGDVGM--------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARL 303 (461)
T ss_dssp ECCSSBCHHHHH--------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHH
T ss_pred eccCCcCChHHH--------HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHH
Confidence 887665422111 001011112467899999999853321 1 3556899999999986 444332211
Q ss_pred hhh----hccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcc-ccC----cc-cCCCccEEEec
Q 048180 726 VWC----CLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFM-YSG----EA-QCDFVQTIGIW 795 (824)
Q Consensus 726 ~l~----~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~-~~~----~~-~lpsL~~L~i~ 795 (824)
... ..++|+.|++++|. +..... ...+..+..+++|++|+++++ .+... +.. +. ..++|++|+++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~---~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACC---SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGH---HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHH---HHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECC
Confidence 111 23699999999985 332210 000112335699999999998 45443 221 22 27899999999
Q ss_pred CCCCcC-----CCCccccccccceeccCCCC
Q 048180 796 SCCKLE-----RFPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 796 ~C~~L~-----~lp~~~~~l~~L~~L~~~~~ 821 (824)
+| ++. .+|..+..+++|+.|++.+|
T Consensus 379 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 379 DC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp TS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 98 577 68888899999999999987
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=5e-17 Score=189.14 Aligned_cols=342 Identities=11% Similarity=-0.021 Sum_probs=221.9
Q ss_pred CCCccEEEeccCCCcCCCC------ccCCCCccEEEcCCCCCc----ccCChhhhcCCCCCcEEEecCCCCccccccccC
Q 048180 445 SGDVERVSLMGNNLRELRT------CPMFCKLTTLFLQGNPLD----LQLDNDFFNSFPNLKILNLSDTSMGILPKSLSS 514 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~----~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~ 514 (824)
.+.+++|++.+|.+..... ...+++|++|++++|... ..+ ..++.++++|+.|++++|.+..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL-ETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH-HHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH-HHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 3578888888886544321 356788999999888643 122 23356789999999999888888888888
Q ss_pred cccccEEeccccccc---ccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccc-hhhhcCCCCCc
Q 048180 515 LKYLTVLLLQNCIYL---TCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFP-LHLVTSLHNLQ 589 (824)
Q Consensus 515 l~~L~~L~L~~c~~~---~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-~~~l~~L~~L~ 589 (824)
+++|++|+++.+... ...+ .+..+++|+.|+++++....+|..+..+++|++|++++|.+.... ...+.++++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 999999999754332 2223 478889999999988877788888889999999999998863322 23368899999
Q ss_pred EEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEe-----------cCccchhhhhhhhhcccceeEEEEeccC
Q 048180 590 EFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTF-----------VSLQSFKEYISSQHWLWLQSYKFSVGAL 658 (824)
Q Consensus 590 ~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 658 (824)
+|++.++. .......-...+++|+.|++.. +.++..........+++|+.|.+..+.+
T Consensus 322 ~L~L~~~~-----------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 322 VLETRNVI-----------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp EEEEEGGG-----------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred EEeccCcc-----------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 99998432 1112233345678899999983 3333221111134568899998865544
Q ss_pred CCccccccchhhhccCCCCCccCCcCcceeeecc---cccceee--------ccccCCCCCEEEEecCCC-ccccccchh
Q 048180 659 GKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVH---CNAVTQM--------TIPNLQNLKFLEIFNCEG-LKYLFKYGV 726 (824)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~---~~~~~~~--------~l~~l~~L~~L~L~~c~~-l~~l~~~~~ 726 (824)
....+ .. + ...+++|++|.+.+ |+.++.. .+.++++|+.|++++|.+ +........
T Consensus 391 ~~~~~-----~~---l----~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 391 TNESL-----ES---I----GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp CHHHH-----HH---H----HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cHHHH-----HH---H----HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 22111 00 0 11256899999984 4455432 144589999999988764 232222222
Q ss_pred hhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhc--cccCcccCCCccEEEecCCCCcCCCC
Q 048180 727 WCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRF--MYSGEAQCDFVQTIGIWSCCKLERFP 804 (824)
Q Consensus 727 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~--~~~~~~~lpsL~~L~i~~C~~L~~lp 804 (824)
...+++|+.|+|++|. +...... .....+++|++|+|++|+ +.. ++.....+|+|++|++++|. +....
T Consensus 459 ~~~~~~L~~L~L~~n~-l~~~~~~------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVG-ESDEGLM------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp HHSCTTCCEEEECSCC-SSHHHHH------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred HHhCccceEeeccCCC-CCHHHHH------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 3458999999999885 4321100 012357899999999997 432 34445678999999999986 54321
Q ss_pred c--cccccccceeccCC
Q 048180 805 I--SLWVENYAQKLKSP 819 (824)
Q Consensus 805 ~--~~~~l~~L~~L~~~ 819 (824)
. -...++.|....+.
T Consensus 530 ~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 530 QDLMQMARPYWNIELIP 546 (592)
T ss_dssp TTGGGGCCTTEEEEEEC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 1 12244555544443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.8e-16 Score=164.51 Aligned_cols=189 Identities=23% Similarity=0.355 Sum_probs=126.7
Q ss_pred cCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc
Q 048180 431 KPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL 508 (824)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l 508 (824)
..+..+..+|. ..+..+++|++.+|.+..++. +..+++|++|++++|. +..++..+|..+++|++|+|++|.+..+
T Consensus 23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence 34444555554 334567777777777776664 6677777777777775 4566666667777777777777777666
Q ss_pred cc-cccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcC
Q 048180 509 PK-SLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTS 584 (824)
Q Consensus 509 p~-~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~ 584 (824)
|. .+..+.+|++|++++|. ++.+| . ++++++|++|++++|.++.+|.. +..+++|++|++++|.+..+++..+.+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence 65 34677777777777753 44444 3 67777777777777777776654 567777777777777777776666777
Q ss_pred CCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCc
Q 048180 585 LHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSL 633 (824)
Q Consensus 585 L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 633 (824)
+++|++|++++|.+..++.. .+..+++|+.|++++|..
T Consensus 180 l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEG-----------AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTT-----------TTTTCTTCCEEECCSSCB
T ss_pred CCCcCEEECCCCcCCcCCHH-----------HhccccCCCEEEecCCCe
Confidence 77777777777765544321 255667777777776654
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=8.3e-17 Score=170.31 Aligned_cols=124 Identities=25% Similarity=0.311 Sum_probs=64.7
Q ss_pred CCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCCcccCCCccEEec
Q 048180 467 FCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDV 546 (824)
Q Consensus 467 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l 546 (824)
+++|++|++++|. +..++. +..+++|++|+|++|.+..++. +..+++|++|++++|. ++.+|.++++++|++|++
T Consensus 40 l~~L~~L~l~~~~-i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCC-ccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEEC
Confidence 4445555555543 233332 3455555555555555555544 5555555555555542 444445555555555555
Q ss_pred cCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcc
Q 048180 547 SGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 547 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l 598 (824)
++|.++.+|. +..+++|++|++++|.+..+++ ++.+++|++|++++|.+
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 5555555543 5555555555555555554443 45555555555555543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=3.2e-17 Score=184.80 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=165.2
Q ss_pred CCCcEEEecCCCCcccc-ccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccC
Q 048180 493 PNLKILNLSDTSMGILP-KSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSR 571 (824)
Q Consensus 493 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 571 (824)
++|++|+|++|.+..+| ..++.+++|++|+|++|. ++..+.++.+++|++|++++|.++.+|.. ++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 37888888888876664 467788888888888764 33333477788888888888877766632 7778888888
Q ss_pred ccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeE
Q 048180 572 TRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSY 651 (824)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 651 (824)
|.+..+++. .+++|++|++++|.+...+ ...++.+++|+.|++++|.+...+
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 160 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLR-----------DLDEGCRSRVQYLDLKLNEIDTVN-------------- 160 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGG-----------GBCGGGGSSEEEEECTTSCCCEEE--------------
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCC-----------chhhcCCCCCCEEECCCCCCCCcC--------------
Confidence 777666543 4567777777777654432 123455666666666655443210
Q ss_pred EEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceeecc-ccCCCCCEEEEecCCCccccccchhhhhc
Q 048180 652 KFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQMTI-PNLQNLKFLEIFNCEGLKYLFKYGVWCCL 730 (824)
Q Consensus 652 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~l-~~l~~L~~L~L~~c~~l~~l~~~~~l~~l 730 (824)
...+ .++++|+.|+|++| .+..+++ ...+
T Consensus 161 ----------------------------------------------~~~l~~~l~~L~~L~Ls~N-~l~~~~~---~~~l 190 (487)
T 3oja_A 161 ----------------------------------------------FAELAASSDTLEHLNLQYN-FIYDVKG---QVVF 190 (487)
T ss_dssp ----------------------------------------------GGGGGGGTTTCCEEECTTS-CCCEEEC---CCCC
T ss_pred ----------------------------------------------hHHHhhhCCcccEEecCCC-ccccccc---cccC
Confidence 0012 25788999999885 5666644 3359
Q ss_pred cccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhccccCcccCCCccEEEecCCCCc-CCCCccccc
Q 048180 731 RNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGIWSCCKL-ERFPISLWV 809 (824)
Q Consensus 731 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i~~C~~L-~~lp~~~~~ 809 (824)
++|+.|+|++| .++.++. .+..+++|+.|+++++ .+..+|..+..+++|+.|++++|+-. ..+|..+..
T Consensus 191 ~~L~~L~Ls~N-~l~~~~~--------~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 191 AKLKTLDLSSN-KLAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp TTCCEEECCSS-CCCEECG--------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred CCCCEEECCCC-CCCCCCH--------hHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 99999999988 4555543 3457899999999998 68889998999999999999997544 367777888
Q ss_pred cccceeccCC
Q 048180 810 ENYAQKLKSP 819 (824)
Q Consensus 810 l~~L~~L~~~ 819 (824)
++.|+.+++.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 8888877663
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=1.6e-17 Score=193.39 Aligned_cols=347 Identities=14% Similarity=0.070 Sum_probs=229.0
Q ss_pred CccEEEeccCCCc---CCCC-ccCCCCccEEEcCCCCCcccC---ChhhhcCCCCCcEEEecCCCCc-----cccccccC
Q 048180 447 DVERVSLMGNNLR---ELRT-CPMFCKLTTLFLQGNPLDLQL---DNDFFNSFPNLKILNLSDTSMG-----ILPKSLSS 514 (824)
Q Consensus 447 ~~~~L~l~~~~~~---~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~ 514 (824)
.+++|++.++... .++. ...+++|++|++++|.....- ...+...++.|+.|+++++.+. .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 4788888776521 1111 347889999999998643221 1234567899999999999875 44555678
Q ss_pred cccccEEecccccccccCCC-cccCCCccEEeccCCCC----cccCcccccCCCCcEEeccCccccccchhhhcCCCCCc
Q 048180 515 LKYLTVLLLQNCIYLTCLPS-LAELVELMVLDVSGSGI----AEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQ 589 (824)
Q Consensus 515 l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L~l~~~~l----~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 589 (824)
+++|++|++++|. +..+|. ++++++|++|+++.... ...+..+..+++|+.|.+.++....+|. .+..+++|+
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCC
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCc
Confidence 8999999999975 445674 88999999999985421 2455677888999999998876556654 478899999
Q ss_pred EEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEec---cCC---Cccc
Q 048180 590 EFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVG---ALG---KGKL 663 (824)
Q Consensus 590 ~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~---~~~~ 663 (824)
+|++++|.+.. ......+..+++|+.|++. +.+....-......+++|+.|.+..+ ... ...+
T Consensus 297 ~L~Ls~~~l~~----------~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 297 KLDLLYALLET----------EDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp EEEETTCCCCH----------HHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred EEecCCCcCCH----------HHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 99999986322 1223446889999999998 33332111111245678999999831 000 0000
Q ss_pred cccchhhhccCCCCCccCCcCcceeeecccccceee---ccc-cCCCCCEEEEec---CCCccccccc----hhhhhccc
Q 048180 664 RGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM---TIP-NLQNLKFLEIFN---CEGLKYLFKY----GVWCCLRN 732 (824)
Q Consensus 664 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~---~l~-~l~~L~~L~L~~---c~~l~~l~~~----~~l~~l~~ 732 (824)
....... ....+++|++|.+ +|+.+... .+. .+++|+.|++++ |+.++..|.. ..+..+++
T Consensus 366 ~~~~~~~-------l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 366 SQRGLIA-------LAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp CHHHHHH-------HHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred CHHHHHH-------HHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 0000000 0123578999999 55555443 333 389999999985 5566654221 23567999
Q ss_pred cceeccccccc-hhhhhcccCCCCCCCcccccccCeEeccCCcchhc--cccCcccCCCccEEEecCCCCcCC--CCccc
Q 048180 733 LEELVIANCRN-LEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRF--MYSGEAQCDFVQTIGIWSCCKLER--FPISL 807 (824)
Q Consensus 733 L~~L~l~~~~~-l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~--~~~~~~~lpsL~~L~i~~C~~L~~--lp~~~ 807 (824)
|+.|+++.|.+ +....... -...+|+|++|+|++|. +.. ++.....+++|++|+|++|+ +.. ++...
T Consensus 438 L~~L~L~~~~~~l~~~~~~~------~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~ 509 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSY------IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV 509 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHH------HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHH
T ss_pred CCEEEEecCCCCccHHHHHH------HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHH
Confidence 99999987653 22211000 01247899999999985 432 34445678999999999997 542 45556
Q ss_pred cccccceeccCCCCc
Q 048180 808 WVENYAQKLKSPCSL 822 (824)
Q Consensus 808 ~~l~~L~~L~~~~~~ 822 (824)
..+++|+.|++.+|.
T Consensus 510 ~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHCSSCCEEEEESCB
T ss_pred HhcCccCeeECcCCc
Confidence 688999999999883
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=7.3e-16 Score=161.39 Aligned_cols=178 Identities=25% Similarity=0.250 Sum_probs=144.2
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEeccc
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 525 (824)
..++.+++.++.+..+|... .++++.|++++|. +..++...|..+++|++|+|++|.+..+|.. +.+.+|++|++++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred CCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 46788888888888887622 2688999999986 4556556678899999999999998888764 7889999999998
Q ss_pred ccccccCCC-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccc
Q 048180 526 CIYLTCLPS-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPR 603 (824)
Q Consensus 526 c~~~~~lp~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~ 603 (824)
| .++.+|. +..+++|++|++++|+++.+|. .+..+++|++|++++|.+..+|++.+..+++|+.|++++|.+..++.
T Consensus 87 N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 87 N-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp S-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred C-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 6 5677884 8889999999999999998874 57889999999999999988888878889999999999988776543
Q ss_pred cccchhhhhchHhhhcCCCccEEEEEecCccchhh
Q 048180 604 SLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKE 638 (824)
Q Consensus 604 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 638 (824)
. .+..+++|+.|+++.|.+..++.
T Consensus 166 ~-----------~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 166 G-----------LLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp T-----------TTTTCTTCCEEECCSSCCCCCCT
T ss_pred H-----------HhcCcCCCCEEECCCCcCCccCh
Confidence 2 35678889999998887765543
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=1e-15 Score=159.34 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=112.2
Q ss_pred EeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccc
Q 048180 452 SLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLT 530 (824)
Q Consensus 452 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~ 530 (824)
...+..+..+|... .++|++|++++|. +..++...+..+++|++|++++|.+..++. .+..+.+|++|++++|....
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 33444455555411 2467788887775 445555456778888888888888766665 57778888888888764333
Q ss_pred cCC-CcccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccc-hhhhcCCCCCcEEEeecCccccccccccc
Q 048180 531 CLP-SLAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFP-LHLVTSLHNLQEFSMIGCDLLCLPRSLMQ 607 (824)
Q Consensus 531 ~lp-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~-~~~l~~L~~L~~L~l~~~~l~~~~~~~~~ 607 (824)
..| .+.++++|++|++++|.+..++. .++++++|++|++++|.+..++ +..++++++|++|++++|.+..++..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~--- 167 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--- 167 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG---
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH---
Confidence 333 37788888888888887776665 5777888888888888776532 33477788888888888776554321
Q ss_pred hhhhhchHhhhcCCCcc-EEEEEecCcc
Q 048180 608 EDYAAFIEDVRKLRNLN-VFDFTFVSLQ 634 (824)
Q Consensus 608 ~~~~~~~~~l~~L~~L~-~L~l~~~~~~ 634 (824)
.+..+..++.|. .|+++.|.+.
T Consensus 168 -----~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 168 -----DLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp -----GGHHHHTCTTCCEEEECCSSCCC
T ss_pred -----HhhhhhhccccceeeecCCCccc
Confidence 133444455444 5666665544
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=4.8e-16 Score=161.90 Aligned_cols=189 Identities=21% Similarity=0.227 Sum_probs=154.1
Q ss_pred CcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc-
Q 048180 433 GRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP- 509 (824)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp- 509 (824)
+..+..+|. ..+..+++|++.+|.+..++. +..+++|++|++++|. +..++...+..+++|++|+|++|.+..++
T Consensus 16 ~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 444555665 455789999999999988774 8889999999999996 56677666789999999999999998776
Q ss_pred ccccCcccccEEecccccccccCC--CcccCCCccEEeccCCCCcc--cCcccccCCCCcEEeccCccccccchhhhcCC
Q 048180 510 KSLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLDVSGSGIAE--FPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSL 585 (824)
Q Consensus 510 ~~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L 585 (824)
..+..+.+|++|++++|. +..++ .++++++|++|++++|.+.. +|..+.++++|++|++++|.+..+++..+..+
T Consensus 94 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 578999999999999975 45555 49999999999999999986 78899999999999999999988877667777
Q ss_pred CCCc----EEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 586 HNLQ----EFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 586 ~~L~----~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
.+|+ .|++++|.+..++.. .....+|+.|++++|.+..+
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~------------~~~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPG------------AFKEIRLKELALDTNQLKSV 215 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTT------------SSCSCCEEEEECCSSCCSCC
T ss_pred hhccccceeeecCCCcccccCcc------------ccCCCcccEEECCCCceeec
Confidence 7776 899999986654322 22334799999988876644
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.3e-15 Score=157.91 Aligned_cols=177 Identities=24% Similarity=0.381 Sum_probs=147.9
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccc-cCcccccEEecc
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSL-SSLKYLTVLLLQ 524 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i-~~l~~L~~L~L~ 524 (824)
...+.+++.++.+..+|... .++++.|++++|. +..++...|..+++|++|+|++|.+..+|..+ ..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 35678999999998888622 2689999999996 56777766889999999999999999888764 889999999999
Q ss_pred cccccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccc
Q 048180 525 NCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 525 ~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~ 601 (824)
+|. ++.+| . +.++++|++|++++|.++.+|.. +..+++|++|++++|.+..+++..++.+++|++|++++|.+..+
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 964 66666 3 79999999999999999987764 68999999999999999999888789999999999999987665
Q ss_pred cccccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 602 PRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
+. ..+..+++|+.|+++.|.+..+
T Consensus 173 ~~-----------~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 173 PE-----------GAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CT-----------TTTTTCTTCCEEECCSSCCSCC
T ss_pred Ch-----------hHhccCCCcCEEECCCCcCCcC
Confidence 32 2367789999999998876644
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.3e-16 Score=160.55 Aligned_cols=185 Identities=12% Similarity=0.226 Sum_probs=126.6
Q ss_pred cceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecC-CCCccccc-c
Q 048180 436 LRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSD-TSMGILPK-S 511 (824)
Q Consensus 436 ~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp~-~ 511 (824)
+..+|. .+..++.+++.+|.+..++. +..+++|++|++++|..+..++...|..+++|++|++++ +.+..+|. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 445555 45577778887777777665 667777888888777545666665667777788888877 77776664 5
Q ss_pred ccCcccccEEecccccccccCCCcccCCCcc---EEeccCC-CCcccCcc-cccCCCCc-EEeccCccccccchhhhcCC
Q 048180 512 LSSLKYLTVLLLQNCIYLTCLPSLAELVELM---VLDVSGS-GIAEFPDG-MNHLTKLL-FLNLSRTRVRNFPLHLVTSL 585 (824)
Q Consensus 512 i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~~~~~~~~l~~L 585 (824)
+..+++|++|++++|. ++.+|.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|.+..+|...+..
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 6777778888877753 55567666666666 7778777 77777654 66777777 7777777777776654544
Q ss_pred CCCcEEEeecCc-cccccccccchhhhhchHhhhcC-CCccEEEEEecCccc
Q 048180 586 HNLQEFSMIGCD-LLCLPRSLMQEDYAAFIEDVRKL-RNLNVFDFTFVSLQS 635 (824)
Q Consensus 586 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~ 635 (824)
++|++|++++|. +..++. ..+..+ ++|+.|+++.|.+..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDK-----------DAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CEEEEEECTTCTTCCEECT-----------TTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCCEEEcCCCCCcccCCH-----------HHhhccccCCcEEECCCCcccc
Confidence 677777777773 554322 235556 777777777666544
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=9e-16 Score=162.32 Aligned_cols=190 Identities=17% Similarity=0.225 Sum_probs=157.5
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
...+++|++.++.+..++.+..+++|++|++++|. +..++. +..+++|++|+|++|.+..+| .+..+.+|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 35789999999999888888889999999999986 556665 689999999999999998876 68899999999999
Q ss_pred cccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 525 NCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 525 ~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
+| .++.+|.++++++|++|++++|.++.+|. +..+++|++|++++|.+..+++ +..+++|+.|++++|.+..++
T Consensus 116 ~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-- 189 (308)
T 1h6u_A 116 ST-QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS-- 189 (308)
T ss_dssp TS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--
T ss_pred CC-CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh--
Confidence 96 46777789999999999999999998876 8899999999999999888865 889999999999998765432
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccC
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGAL 658 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 658 (824)
.+..+++|+.|++++|.+...+. ...+++|+.|.++.+.+
T Consensus 190 -----------~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 -----------PLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -----------GGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEE
T ss_pred -----------hhcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCee
Confidence 26788999999999998877653 23455666666665543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.5e-16 Score=160.24 Aligned_cols=127 Identities=21% Similarity=0.300 Sum_probs=71.3
Q ss_pred CccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC-Cccccc-cccCcccccEEecccccccccCC--CcccCCCccEE
Q 048180 469 KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS-MGILPK-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVL 544 (824)
Q Consensus 469 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L 544 (824)
+|++|++++|. +..+|...|..+++|++|++++|. ++.+|. .+..+++|++|++++|..++.+| .+.++++|++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666654 444554445566666666666664 555554 45566666666666533444444 25556666666
Q ss_pred eccCCCCcccCcccccCCCCc---EEeccCc-cccccchhhhcCCCCCc-EEEeecCc
Q 048180 545 DVSGSGIAEFPDGMNHLTKLL---FLNLSRT-RVRNFPLHLVTSLHNLQ-EFSMIGCD 597 (824)
Q Consensus 545 ~l~~~~l~~lp~~i~~L~~L~---~L~l~~~-~~~~~~~~~l~~L~~L~-~L~l~~~~ 597 (824)
++++|.++.+|. +..+++|+ +|++++| .+..+++..+.++++|+ +|++++|.
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 666666555554 55555555 6666655 55555554455555555 55555544
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.9e-17 Score=192.67 Aligned_cols=346 Identities=12% Similarity=0.043 Sum_probs=156.4
Q ss_pred CCccEEEeccCCCcCCC--Cc-cCCCCccEEEcCCCCCccc-CChhhhcCCCCCcEEEecCCCCcc-----ccccccCcc
Q 048180 446 GDVERVSLMGNNLRELR--TC-PMFCKLTTLFLQGNPLDLQ-LDNDFFNSFPNLKILNLSDTSMGI-----LPKSLSSLK 516 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~ 516 (824)
..+++|++.++.+.... .+ ..+++|++|++.+|..... ....++..+++|++|+|++|.+.. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 35566666665433211 12 1456666666666632222 112233456666666666665422 222223555
Q ss_pred cccEEeccccc-cc--ccCCC-cccCCCccEEeccCC-CCcccCcccccCCCCcEEeccCcc------------------
Q 048180 517 YLTVLLLQNCI-YL--TCLPS-LAELVELMVLDVSGS-GIAEFPDGMNHLTKLLFLNLSRTR------------------ 573 (824)
Q Consensus 517 ~L~~L~L~~c~-~~--~~lp~-i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~------------------ 573 (824)
+|++|++++|. .+ ..++. +.++++|++|++++| .+..+|..+.++++|++|++..+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 66666666653 11 01111 234566666666666 444555555555555555543321
Q ss_pred -------------ccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhh
Q 048180 574 -------------VRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYI 640 (824)
Q Consensus 574 -------------~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 640 (824)
...++ ..+..+++|++|++++|.+.. .....-+..+++|+.|++..+ +....-..
T Consensus 265 ~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~----------~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYATVQS----------YDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp TTCCEEECCBTCCGGGGG-GGHHHHTTCCEEECTTCCCCH----------HHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred CCcccccCCcccchhhHH-HHHHhhCCCCEEEccCCCCCH----------HHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 11121 113356677777777765221 011223556777777777766 22110001
Q ss_pred hhhhcccceeEEEEeccC----CCccccccchhhhccCCCCCccCCcCcceeeecccccceee---cc-ccCCCCCEEEE
Q 048180 641 SSQHWLWLQSYKFSVGAL----GKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM---TI-PNLQNLKFLEI 712 (824)
Q Consensus 641 ~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~---~l-~~l~~L~~L~L 712 (824)
....+++|+.|.+..+.. +...+....... + ....++|++|.+ +|+.++.. .+ ..+++|+.|++
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~---l----~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS---V----SMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH---H----HHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHH---H----HHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEe
Confidence 112356777777643210 000010000000 0 011356666633 34433332 12 24667777777
Q ss_pred e-----cCCCccccccc----hhhhhccccceeccccccchhhhhcccCCCCCCCcc-cccccCeEeccCCcchhccccC
Q 048180 713 F-----NCEGLKYLFKY----GVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQV-CWRSLRKLILSNLPELRFMYSG 782 (824)
Q Consensus 713 ~-----~c~~l~~l~~~----~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~-~~p~L~~L~l~~~~~L~~~~~~ 782 (824)
+ +|..+...+.. ..+..+++|+.|++++ .+...... .+. .+++|+.|+|++|.--......
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~-------~l~~~~~~L~~L~L~~~~i~~~~~~~ 475 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE-------YIGTYAKKMEMLSVAFAGDSDLGMHH 475 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH-------HHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHH-------HHHHhchhccEeeccCCCCcHHHHHH
Confidence 6 45555533211 1234566666666654 22211100 011 2456666666665311111111
Q ss_pred c-ccCCCccEEEecCCCCcCC--CCccccccccceeccCCCC
Q 048180 783 E-AQCDFVQTIGIWSCCKLER--FPISLWVENYAQKLKSPCS 821 (824)
Q Consensus 783 ~-~~lpsL~~L~i~~C~~L~~--lp~~~~~l~~L~~L~~~~~ 821 (824)
+ ..+|+|++|++++|+. .. ++.....+++|+.|++.+|
T Consensus 476 l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESS
T ss_pred HHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCC
Confidence 1 3456666666666643 21 1112334566666666655
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=6.3e-17 Score=171.76 Aligned_cols=241 Identities=16% Similarity=0.108 Sum_probs=153.2
Q ss_pred CccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCC-cccCChhhh------cCCCCCcEEEecCCCCc-cccccc--cCc
Q 048180 447 DVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPL-DLQLDNDFF------NSFPNLKILNLSDTSMG-ILPKSL--SSL 515 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~~~------~~l~~Lr~L~L~~~~~~-~lp~~i--~~l 515 (824)
.++.+.+.+|.+ .+|. +... |+.|++++|.. ...+|..+. ..+++|++|+|++|.+. .+|..+ ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 455556666666 4443 2222 77777777654 223444321 15788888888888875 567765 788
Q ss_pred ccccEEecccccccccCCC-cccC-----CCccEEeccCCCCcccC-cccccCCCCcEEeccCccccc---cchh-hhcC
Q 048180 516 KYLTVLLLQNCIYLTCLPS-LAEL-----VELMVLDVSGSGIAEFP-DGMNHLTKLLFLNLSRTRVRN---FPLH-LVTS 584 (824)
Q Consensus 516 ~~L~~L~L~~c~~~~~lp~-i~~L-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~---~~~~-~l~~ 584 (824)
++|++|++++|. ++..|. ++.+ ++|++|++++|++..+| ..++++++|++|++++|.+.. +++. .+++
T Consensus 121 ~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 888888888764 444464 6666 78888888888888666 567888888888888887533 2222 1277
Q ss_pred CCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCcccc
Q 048180 585 LHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLR 664 (824)
Q Consensus 585 L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 664 (824)
+++|++|++++|.+..++.. ...-+..+++|+.|+++.|.+......
T Consensus 200 l~~L~~L~L~~N~l~~~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------- 246 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGV--------CSALAAARVQLQGLDLSHNSLRDAAGA------------------------- 246 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHH--------HHHHHHTTCCCSEEECTTSCCCSSCCC-------------------------
T ss_pred CCCCCEEECCCCcCcchHHH--------HHHHHhcCCCCCEEECCCCcCCcccch-------------------------
Confidence 88888888888875532110 012335677888888887766542100
Q ss_pred ccchhhhccCCCCCccCCcCcceeeecccccceee-ccccCCCCCEEEEecCCCccccccchhhhhccccceecccccc
Q 048180 665 GNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM-TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCR 742 (824)
Q Consensus 665 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 742 (824)
.....+++|++|++++|.-...+ .+. ++|+.|+++++ .++.+|. +..+++|+.|++++++
T Consensus 247 ------------~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 ------------PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ------------SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTCT
T ss_pred ------------hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCChh---HhhCCCCCEEeccCCC
Confidence 01112466777777776533211 222 78888888874 6666643 6678999999998874
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2e-16 Score=169.89 Aligned_cols=247 Identities=16% Similarity=0.164 Sum_probs=144.3
Q ss_pred CccEEEcCCCCCcccCChhhhcCC--CCCcEEEecCCCCccccccccCcccccEEeccccccccc-CCC-cccCCCccEE
Q 048180 469 KLTTLFLQGNPLDLQLDNDFFNSF--PNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTC-LPS-LAELVELMVL 544 (824)
Q Consensus 469 ~L~~L~l~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~-lp~-i~~L~~L~~L 544 (824)
.++.++++++... +..+..+ +++++|+++++.+...+..+..+.+|++|++++|..... +|. +.++++|++|
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777766422 3334555 677777777777666555566677777777776642222 443 5666666666
Q ss_pred eccCCCCc-ccCcccccCCCCcEEeccCc-cccc--cchhhhcCCCCCcEEEeecC-ccccccccccchhhhhchHhhhc
Q 048180 545 DVSGSGIA-EFPDGMNHLTKLLFLNLSRT-RVRN--FPLHLVTSLHNLQEFSMIGC-DLLCLPRSLMQEDYAAFIEDVRK 619 (824)
Q Consensus 545 ~l~~~~l~-~lp~~i~~L~~L~~L~l~~~-~~~~--~~~~~l~~L~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~l~~ 619 (824)
++++|.+. ..|..++.+++|++|++++| .+.. ++ ..+.++++|++|++++| .+.. ......+..
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~ 192 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTE----------KHVQVAVAH 192 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCH----------HHHHHHHHH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcCh----------HHHHHHHHh
Confidence 66666655 45555666666666666666 3432 22 23555666666666665 3221 011223444
Q ss_pred CC-CccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeeccccccee
Q 048180 620 LR-NLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQ 698 (824)
Q Consensus 620 L~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 698 (824)
++ +|+.|++++|.. .+..
T Consensus 193 l~~~L~~L~l~~~~~-------------------------------------------------------------~~~~ 211 (336)
T 2ast_B 193 VSETITQLNLSGYRK-------------------------------------------------------------NLQK 211 (336)
T ss_dssp SCTTCCEEECCSCGG-------------------------------------------------------------GSCH
T ss_pred cccCCCEEEeCCCcc-------------------------------------------------------------cCCH
Confidence 44 555555444321 1111
Q ss_pred e----ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCc
Q 048180 699 M----TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLP 774 (824)
Q Consensus 699 ~----~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~ 774 (824)
. .+..+++|+.|++++|..+..... ..+..+++|+.|++++|..+..... ..+..+|+|++|++++|
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS-
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc-
Confidence 0 235678999999999875554322 3467899999999999974332110 13446899999999998
Q ss_pred chhcccc-CcccC-CCccEEEecCCCCcCCCCc
Q 048180 775 ELRFMYS-GEAQC-DFVQTIGIWSCCKLERFPI 805 (824)
Q Consensus 775 ~L~~~~~-~~~~l-psL~~L~i~~C~~L~~lp~ 805 (824)
++. .+..+ .+|+.|+++ |+++.....
T Consensus 283 ----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 283 ----VPDGTLQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp ----SCTTCHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred ----cCHHHHHHHHhhCcceEEe-cccCccccC
Confidence 322 22233 236666675 466776443
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=2.5e-15 Score=156.04 Aligned_cols=175 Identities=20% Similarity=0.347 Sum_probs=148.2
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc-ccCcccccEEec
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS-LSSLKYLTVLLL 523 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L 523 (824)
...++.+.+.++.+..++.+..+++|++|++++|. +..++ .+..+++|++|++++|.+..+|.. ++.+.+|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 46789999999999888888899999999999996 44444 368999999999999999888764 689999999999
Q ss_pred ccccccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccc
Q 048180 524 QNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 524 ~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 600 (824)
++|. ++.+| . ++++++|++|++++|.++.+|.. +.++++|++|++++|.+..+++..++.+++|++|++++|.+..
T Consensus 117 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 117 VENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 9975 55555 4 89999999999999999988775 5889999999999999998888878999999999999998766
Q ss_pred ccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 601 LPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 601 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
++. ..++.+++|+.|++++|.+.
T Consensus 196 ~~~-----------~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 196 VPD-----------GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCT-----------TTTTTCTTCCEEECCSSCBC
T ss_pred cCH-----------HHHhCCcCCCEEEccCCCcc
Confidence 532 24678899999999888654
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.8e-16 Score=168.88 Aligned_cols=248 Identities=18% Similarity=0.154 Sum_probs=172.1
Q ss_pred CccEEEeccCCCcCCCCccCC--CCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcc--ccccccCcccccEEe
Q 048180 447 DVERVSLMGNNLRELRTCPMF--CKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGI--LPKSLSSLKYLTVLL 522 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~ 522 (824)
..+++++.++.+.. ..+..+ ++++.|++.+|......+. +..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 46788888776541 113444 7899999999875444443 3578999999999999753 777889999999999
Q ss_pred cccccccccCC-CcccCCCccEEeccCC-CCc--ccCcccccCCCCcEEeccCc-ccccc-chhhhcCCC-CCcEEEeec
Q 048180 523 LQNCIYLTCLP-SLAELVELMVLDVSGS-GIA--EFPDGMNHLTKLLFLNLSRT-RVRNF-PLHLVTSLH-NLQEFSMIG 595 (824)
Q Consensus 523 L~~c~~~~~lp-~i~~L~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~l~~~-~~~~~-~~~~l~~L~-~L~~L~l~~ 595 (824)
+++|......| .++++++|++|++++| .++ .+|..+.++++|++|++++| .+... .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 99986444556 4889999999999999 787 47878899999999999999 77542 234478899 999999999
Q ss_pred CccccccccccchhhhhchHhhhcCCCccEEEEEecC-ccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccC
Q 048180 596 CDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVS-LQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEF 674 (824)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 674 (824)
|.+. + ........+..+++|+.|++++|. ++..
T Consensus 205 ~~~~-~-------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------------------------------- 238 (336)
T 2ast_B 205 YRKN-L-------QKSDLSTLVRRCPNLVHLDLSDSVMLKND-------------------------------------- 238 (336)
T ss_dssp CGGG-S-------CHHHHHHHHHHCTTCSEEECTTCTTCCGG--------------------------------------
T ss_pred Cccc-C-------CHHHHHHHHhhCCCCCEEeCCCCCcCCHH--------------------------------------
Confidence 8310 0 001234455667777777776654 2110
Q ss_pred CCCCccCCcCcceeeecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCC
Q 048180 675 PNDPIWLPWNTSELLLVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDE 754 (824)
Q Consensus 675 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~ 754 (824)
....+..+++|+.|++++|....... ...+..+++|+.|++++| + +..
T Consensus 239 ----------------------~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~--i---~~~---- 286 (336)
T 2ast_B 239 ----------------------CFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI--V---PDG---- 286 (336)
T ss_dssp ----------------------GGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS--S---CTT----
T ss_pred ----------------------HHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc--c---CHH----
Confidence 00024556889999999886443321 124678999999999988 2 211
Q ss_pred CCCCcccc-cccCeEeccCCcchhcc
Q 048180 755 NSNPQVCW-RSLRKLILSNLPELRFM 779 (824)
Q Consensus 755 ~~~~~~~~-p~L~~L~l~~~~~L~~~ 779 (824)
.+..+ .+|+.|+++++ .+...
T Consensus 287 ---~~~~l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 287 ---TLQLLKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp ---CHHHHHHHSTTSEESCC-CSCCT
T ss_pred ---HHHHHHhhCcceEEecc-cCccc
Confidence 12233 34777778665 45544
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2e-15 Score=157.97 Aligned_cols=187 Identities=26% Similarity=0.264 Sum_probs=158.6
Q ss_pred cCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc
Q 048180 431 KPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL 508 (824)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l 508 (824)
..+..+..+|. ..+..++.|++.+|.+..++. +..+++|++|++++|. +..++. ...+++|++|+|++|.+..+
T Consensus 17 ~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV--DGTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC--CSCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC--CCCCCcCCEEECCCCcCCcC
Confidence 34455666665 345789999999999988754 8899999999999996 555554 27899999999999999999
Q ss_pred cccccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCC
Q 048180 509 PKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSL 585 (824)
Q Consensus 509 p~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L 585 (824)
|..+..+++|++|++++| .++.+| . ++++++|++|++++|+++.+|.+ +..+++|++|++++|.+..+|++.+.++
T Consensus 93 ~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp CCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred chhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 999999999999999996 456666 4 99999999999999999988876 5789999999999999999998888999
Q ss_pred CCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 586 HNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 586 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
++|++|++++|.+..+|. .+..+.+|+.+++++|...
T Consensus 172 ~~L~~L~L~~N~l~~ip~------------~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 172 ENLDTLLLQENSLYTIPK------------GFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCCEEECCSSCCCCCCT------------TTTTTCCCSEEECCSCCBC
T ss_pred CCCCEEECCCCcCCccCh------------hhcccccCCeEEeCCCCcc
Confidence 999999999998776543 3455678999999988764
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=3.3e-15 Score=156.51 Aligned_cols=171 Identities=21% Similarity=0.298 Sum_probs=148.8
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
...++.+++.++.+..++.+..+++|++|++++|. +..+++ +..+++|++|++++|.+..+|. +..+.+|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 45789999999999998888899999999999996 555665 6899999999999999988765 8999999999999
Q ss_pred cccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 525 NCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 525 ~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
+| .++.++.++++++|++|++++|.++.+ ..+..+++|++|++++|.+..+++ +..+++|++|++++|.+..+
T Consensus 121 ~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--- 193 (291)
T 1h6t_A 121 HN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--- 193 (291)
T ss_dssp TS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---
T ss_pred CC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC---
Confidence 96 567778899999999999999999988 578999999999999999988876 89999999999999976543
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
..+..+++|+.|++++|.+...
T Consensus 194 ----------~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 194 ----------RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ----------GGGTTCTTCSEEEEEEEEEECC
T ss_pred ----------hhhccCCCCCEEECcCCcccCC
Confidence 2478899999999999877653
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=5.7e-15 Score=151.30 Aligned_cols=175 Identities=25% Similarity=0.328 Sum_probs=130.6
Q ss_pred CccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEeccc
Q 048180 447 DVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQN 525 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~ 525 (824)
..+++++.++.+..+|... .++++.|++++|. +..+++..+..+++|++|+|++|.+..++. .+..+.+|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4567777777777777622 1578888888886 445555556788888888888888876655 467888888888888
Q ss_pred ccccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccc
Q 048180 526 CIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLP 602 (824)
Q Consensus 526 c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~ 602 (824)
|. ++.+| . ++++++|++|++++|.++.+|.. +..+++|++|++++|.+..+++..++.+++|++|++++|.+..++
T Consensus 93 n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred Cc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 64 45555 3 78888888888888888877765 477888888888888888887766888888888888888766543
Q ss_pred ccccchhhhhchHhhhcCCCccEEEEEecCccc
Q 048180 603 RSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS 635 (824)
Q Consensus 603 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 635 (824)
. ..+..+++|+.|++++|.+..
T Consensus 172 ~-----------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 H-----------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp T-----------TTTTTCTTCCEEECCSCCBCT
T ss_pred H-----------HHHhCCCCCCEEEeeCCceeC
Confidence 2 246677888888888877653
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=3.2e-16 Score=182.37 Aligned_cols=320 Identities=17% Similarity=0.120 Sum_probs=159.5
Q ss_pred CCccEEEeccCCCcC-----CCC-ccCCCCccEEEcCCCCCcccCCh----hhhcCCCCCcEEEecCCC-CccccccccC
Q 048180 446 GDVERVSLMGNNLRE-----LRT-CPMFCKLTTLFLQGNPLDLQLDN----DFFNSFPNLKILNLSDTS-MGILPKSLSS 514 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~ 514 (824)
..+++|++.+|.+.. ++. ...+++|++|++++|. ..+.. .+...+++|++|++++|. +..+|..+..
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 456666666665333 111 2355667777776664 11221 223445677777777663 4445556666
Q ss_pred cccccEEecccccc------cccCC-CcccCCCccEE-eccCCCCcccCcccccCCCCcEEeccCcccccc-chhhhcCC
Q 048180 515 LKYLTVLLLQNCIY------LTCLP-SLAELVELMVL-DVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNF-PLHLVTSL 585 (824)
Q Consensus 515 l~~L~~L~L~~c~~------~~~lp-~i~~L~~L~~L-~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-~~~~l~~L 585 (824)
+++|++|++..|.. +..++ .+.++++|+.| .+.+.....+|..+..+++|++|++++|.+... ....+.++
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 66677776554321 11222 24455555555 333333334555555677777777777765321 12234577
Q ss_pred CCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEe---------cCccchhhhhhhhhcccceeEEEEec
Q 048180 586 HNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTF---------VSLQSFKEYISSQHWLWLQSYKFSVG 656 (824)
Q Consensus 586 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~ 656 (824)
++|++|++.+|. .. .....-...+++|+.|++.. +.++..........+++|+.|.+..+
T Consensus 314 ~~L~~L~l~~~~-~~----------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 314 PKLQRLWVLDYI-ED----------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp TTCCEEEEEGGG-HH----------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred CCcCEEeCcCcc-CH----------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 777777777651 10 01111223466777777733 22221111111123566777655444
Q ss_pred cCCCccccccchhhhccCCCCCccCCcCcceeeec-----ccccceee--------ccccCCCCCEEEEecCCCcccccc
Q 048180 657 ALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLV-----HCNAVTQM--------TIPNLQNLKFLEIFNCEGLKYLFK 723 (824)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~-----~~~~~~~~--------~l~~l~~L~~L~L~~c~~l~~l~~ 723 (824)
.+..... ... ...+++|++|++. +|..++.. .+.++++|+.|++++ .+.....
T Consensus 383 ~l~~~~~-----~~l-------~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~ 448 (594)
T 2p1m_B 383 QMTNAAL-----ITI-------ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF 448 (594)
T ss_dssp CCCHHHH-----HHH-------HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH
T ss_pred CcCHHHH-----HHH-------HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH
Confidence 3311110 000 0123567777777 44444421 134567777777754 3333221
Q ss_pred chhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcc-ccCcccCCCccEEEecCCCC
Q 048180 724 YGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFM-YSGEAQCDFVQTIGIWSCCK 799 (824)
Q Consensus 724 ~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~-~~~~~~lpsL~~L~i~~C~~ 799 (824)
......+++|+.|+|++|. +....... -...+|+|++|+|++|+.-... ......+++|+.|++++|+.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~-i~~~~~~~------l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAG-DSDLGMHH------VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCC-SSHHHHHH------HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCC-CcHHHHHH------HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 1122236777777777764 32211000 0124677777777777542111 12344577777777777754
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=9.6e-15 Score=149.62 Aligned_cols=169 Identities=25% Similarity=0.367 Sum_probs=145.9
Q ss_pred eecCCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCc
Q 048180 429 FFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMG 506 (824)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 506 (824)
+...+..+..+|. ..+..++.|++.+|.+..++. +..+++|++|++++|. +..+++..|..+++|++|+|++|.+.
T Consensus 19 l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 19 VDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp EECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred EecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCccc
Confidence 3445566667776 455789999999999988865 8899999999999996 55677777899999999999999998
Q ss_pred cccc-cccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhh
Q 048180 507 ILPK-SLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLV 582 (824)
Q Consensus 507 ~lp~-~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l 582 (824)
.+|. .+..+.+|++|+|++| .++.+| . ++++++|++|++++|+++.+|. .+..+++|++|++++|.+..+++..+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 8875 5689999999999997 566776 3 7999999999999999998887 58899999999999999999988779
Q ss_pred cCCCCCcEEEeecCcccc
Q 048180 583 TSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 583 ~~L~~L~~L~l~~~~l~~ 600 (824)
.++++|++|++++|.+..
T Consensus 176 ~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCTTCCEEECCSCCBCT
T ss_pred hCCCCCCEEEeeCCceeC
Confidence 999999999999997654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.6e-15 Score=160.89 Aligned_cols=233 Identities=16% Similarity=0.149 Sum_probs=121.7
Q ss_pred EEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCCC--cccCCCccE-Eecc
Q 048180 472 TLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLPS--LAELVELMV-LDVS 547 (824)
Q Consensus 472 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp~--i~~L~~L~~-L~l~ 547 (824)
+++.+++. +..+|..+ .++++.|+|++|.++.+|. .+.++.+|++|+|++|...+.+|. +.++++|++ +.+.
T Consensus 13 ~v~C~~~~-Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESK-VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTT-CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCC-CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34444432 44455432 2456666666666666665 356666666666666655555552 566666554 3444
Q ss_pred CCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecC-ccccccccccchhhhhchHhhhcC-CCcc
Q 048180 548 GSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGC-DLLCLPRSLMQEDYAAFIEDVRKL-RNLN 624 (824)
Q Consensus 548 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~l~~L-~~L~ 624 (824)
+++++.+|. .+..+++|++|++++|.+..+++..+....++..|++.++ .+..++.. .+..+ ..++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-----------~f~~~~~~l~ 157 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-----------SFVGLSFESV 157 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-----------SSTTSBSSCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc-----------chhhcchhhh
Confidence 456665543 4566666666666666666665544444455555655443 22221111 12222 2355
Q ss_pred EEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccceee---cc
Q 048180 625 VFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVTQM---TI 701 (824)
Q Consensus 625 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~---~l 701 (824)
.|+++.|.+..++... + ...+|++|.+.+++.++.+ .+
T Consensus 158 ~L~L~~N~i~~i~~~~--------------------------------------f-~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSA--------------------------------------F-NGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp EEECCSSCCCEECTTS--------------------------------------S-TTEEEEEEECTTCTTCCCCCTTTT
T ss_pred hhccccccccCCChhh--------------------------------------c-cccchhHHhhccCCcccCCCHHHh
Confidence 5555555544332111 0 1123455555544444443 24
Q ss_pred ccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccC
Q 048180 702 PNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSN 772 (824)
Q Consensus 702 ~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~ 772 (824)
..+++|+.|+++++ .++.+|.. .+.+|+.|.+.++..++.+| ++..|++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP---------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLP---------TLEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCC---------CTTTCCSCCEEECSC
T ss_pred ccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCC---------CchhCcChhhCcCCC
Confidence 55667777777663 56666432 24555555555555555555 234567777777654
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=2.5e-14 Score=148.39 Aligned_cols=164 Identities=27% Similarity=0.396 Sum_probs=141.3
Q ss_pred CcccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc-
Q 048180 433 GRRLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS- 511 (824)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~- 511 (824)
+..+..++.-.....++.|++.+|.+..++.+..+++|++|++++|. +..++...+..+++|++|++++|.+..+|..
T Consensus 50 ~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 50 NSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp TSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHH
Confidence 33344444334567899999999999988889999999999999996 5677777789999999999999999888765
Q ss_pred ccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCC
Q 048180 512 LSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNL 588 (824)
Q Consensus 512 i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L 588 (824)
++.+.+|++|++++| .++.+| . ++++++|++|++++|+++.+|.. +..+++|++|++++|.+..+++..++++++|
T Consensus 129 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 689999999999997 466666 3 79999999999999999988775 5889999999999999999988878999999
Q ss_pred cEEEeecCcc
Q 048180 589 QEFSMIGCDL 598 (824)
Q Consensus 589 ~~L~l~~~~l 598 (824)
++|++++|.+
T Consensus 208 ~~L~l~~N~~ 217 (272)
T 3rfs_A 208 QYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCB
T ss_pred CEEEccCCCc
Confidence 9999999864
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=1.3e-14 Score=166.87 Aligned_cols=171 Identities=22% Similarity=0.306 Sum_probs=148.1
Q ss_pred CCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecc
Q 048180 445 SGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 445 ~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 524 (824)
...++.|++.++.+..++.+..+++|+.|++++|. +..+++ +..+++|+.|+|++|.+..+| .+..+.+|++|+|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 45788899999999988889999999999999996 555665 689999999999999998876 68999999999999
Q ss_pred cccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccccccc
Q 048180 525 NCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRS 604 (824)
Q Consensus 525 ~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~ 604 (824)
+| .+..+|.+..+++|+.|+|++|.+..+ ..+..|++|+.|++++|.+..+++ +..+++|+.|++++|.+..+
T Consensus 118 ~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--- 190 (605)
T 1m9s_A 118 HN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--- 190 (605)
T ss_dssp TS-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---
T ss_pred CC-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---
Confidence 96 466778899999999999999999988 578999999999999999988876 88999999999999976543
Q ss_pred ccchhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 605 LMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 605 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
..+..+++|+.|++++|.+...
T Consensus 191 ----------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 ----------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ----------GGGTTCTTCSEEECCSEEEECC
T ss_pred ----------hHHccCCCCCEEEccCCcCcCC
Confidence 3478889999999998877654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.4e-14 Score=156.22 Aligned_cols=157 Identities=16% Similarity=0.247 Sum_probs=70.2
Q ss_pred ccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcE-EEecCCCCcccc-c
Q 048180 435 RLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKI-LNLSDTSMGILP-K 510 (824)
Q Consensus 435 ~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~-L~L~~~~~~~lp-~ 510 (824)
.++.+|. ..+.++++|.+.+|+++.++. +.++++|++|++++|.....+|...|.++++|.. +.+.++.+..+| .
T Consensus 20 ~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 20 KVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 3444443 233445555555555555543 4455555555555554434444444444444432 333344444443 2
Q ss_pred cccCcccccEEecccccccccCCC--cccCCCccEEeccCC-CCcccCcc-cccC-CCCcEEeccCccccccchhhhcCC
Q 048180 511 SLSSLKYLTVLLLQNCIYLTCLPS--LAELVELMVLDVSGS-GIAEFPDG-MNHL-TKLLFLNLSRTRVRNFPLHLVTSL 585 (824)
Q Consensus 511 ~i~~l~~L~~L~L~~c~~~~~lp~--i~~L~~L~~L~l~~~-~l~~lp~~-i~~L-~~L~~L~l~~~~~~~~~~~~l~~L 585 (824)
.+..+++|++|++++| .++.+|. +....++..|++.++ .+..+|.. +..+ ..++.|++++|.+..+++.. ...
T Consensus 99 ~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~ 176 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNG 176 (350)
T ss_dssp SBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STT
T ss_pred hhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-ccc
Confidence 3445555555555543 2333331 333344445555432 44444432 2222 23455555555555444432 233
Q ss_pred CCCcEEEee
Q 048180 586 HNLQEFSMI 594 (824)
Q Consensus 586 ~~L~~L~l~ 594 (824)
.+|++|.+.
T Consensus 177 ~~L~~l~l~ 185 (350)
T 4ay9_X 177 TQLDELNLS 185 (350)
T ss_dssp EEEEEEECT
T ss_pred cchhHHhhc
Confidence 345555544
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=3.1e-15 Score=158.52 Aligned_cols=226 Identities=15% Similarity=0.082 Sum_probs=138.7
Q ss_pred CCCccEEEcCCCCCcccCChhh--hcCCCCCcEEEecCCCCc-cccccc--cCcccccEEecccccccccCCC-----cc
Q 048180 467 FCKLTTLFLQGNPLDLQLDNDF--FNSFPNLKILNLSDTSMG-ILPKSL--SSLKYLTVLLLQNCIYLTCLPS-----LA 536 (824)
Q Consensus 467 ~~~L~~L~l~~~~~~~~~~~~~--~~~l~~Lr~L~L~~~~~~-~lp~~i--~~l~~L~~L~L~~c~~~~~lp~-----i~ 536 (824)
...++.|.+.++......-..+ +..+++|++|++++|.+. ..|..+ ..+.+|++|++++|......|. +.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3446666666654221100000 123466888888888864 455555 7788888888888754444332 35
Q ss_pred cCCCccEEeccCCCCcccC-cccccCCCCcEEeccCccccc---cch-hhhcCCCCCcEEEeecCccccccccccchhhh
Q 048180 537 ELVELMVLDVSGSGIAEFP-DGMNHLTKLLFLNLSRTRVRN---FPL-HLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYA 611 (824)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~---~~~-~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~ 611 (824)
.+++|++|++++|.+..+| ..++.+++|++|++++|.+.. ++. ..++.+++|++|++++|.+..++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------- 214 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-------- 214 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH--------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH--------
Confidence 6888888888888887655 467788888888888887533 322 223678888888888887543211
Q ss_pred hchH-hhhcCCCccEEEEEecCccch-hhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceee
Q 048180 612 AFIE-DVRKLRNLNVFDFTFVSLQSF-KEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELL 689 (824)
Q Consensus 612 ~~~~-~l~~L~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 689 (824)
... -++.+++|+.|++++|.+... |..+. ....+++|++|+
T Consensus 215 -~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~------------------------------------~~~~~~~L~~L~ 257 (310)
T 4glp_A 215 -VCAALAAAGVQPHSLDLSHNSLRATVNPSAP------------------------------------RCMWSSALNSLN 257 (310)
T ss_dssp -HHHHHHHHTCCCSSEECTTSCCCCCCCSCCS------------------------------------SCCCCTTCCCEE
T ss_pred -HHHHHHhcCCCCCEEECCCCCCCccchhhHH------------------------------------hccCcCcCCEEE
Confidence 111 246778888888888776543 11110 001235677777
Q ss_pred ecccccceeeccccCCCCCEEEEecCCCccccccchhhhhccccceecccccc
Q 048180 690 LVHCNAVTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCR 742 (824)
Q Consensus 690 l~~~~~~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 742 (824)
+++|.-. .++-.-+++|+.|+|+++ .+..++. +..+++|+.|++++++
T Consensus 258 Ls~N~l~-~lp~~~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFAGLE-QVPKGLPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSSCCC-SCCSCCCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCCCCC-chhhhhcCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCC
Confidence 7666533 222122378888888874 5665533 4567888888888774
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=3.5e-14 Score=148.65 Aligned_cols=177 Identities=18% Similarity=0.259 Sum_probs=144.4
Q ss_pred CCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCCc
Q 048180 456 NNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPSL 535 (824)
Q Consensus 456 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~i 535 (824)
+.+..+.....+++|+.|++++|. +..++. +..+++|++|++++|.+..++. +..+.+|++|++++| .++.+|.+
T Consensus 34 ~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l 108 (291)
T 1h6t_A 34 KSVTDAVTQNELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSL 108 (291)
T ss_dssp SCTTSEECHHHHHTCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGG
T ss_pred CCcccccchhhcCcccEEEccCCC-cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChhh
Confidence 334444445678899999999986 556654 6889999999999999998887 999999999999996 57778889
Q ss_pred ccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchH
Q 048180 536 AELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIE 615 (824)
Q Consensus 536 ~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 615 (824)
+++++|++|++++|.++.++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.+..++
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~------------- 172 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV------------- 172 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG-------------
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccch-------------
Confidence 99999999999999999884 6889999999999999998873 3899999999999999865531
Q ss_pred hhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEec
Q 048180 616 DVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVG 656 (824)
Q Consensus 616 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 656 (824)
.+..+++|+.|++++|.+..++.+ ..+++|+.|.++.+
T Consensus 173 ~l~~l~~L~~L~L~~N~i~~l~~l---~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKNHISDLRAL---AGLKNLDVLELFSQ 210 (291)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGG---TTCTTCSEEEEEEE
T ss_pred hhcCCCccCEEECCCCcCCCChhh---ccCCCCCEEECcCC
Confidence 278899999999999988776542 33455555555544
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=7.1e-15 Score=161.05 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=75.0
Q ss_pred cCCCCCcEEEecCCCCcc-----ccccccCcccccEEeccccc--cc-ccCC-C-------cccCCCccEEeccCCCCcc
Q 048180 490 NSFPNLKILNLSDTSMGI-----LPKSLSSLKYLTVLLLQNCI--YL-TCLP-S-------LAELVELMVLDVSGSGIAE 553 (824)
Q Consensus 490 ~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~c~--~~-~~lp-~-------i~~L~~L~~L~l~~~~l~~ 553 (824)
..+++|++|+|++|.+.. ++..+..+++|++|+|++|. .+ ..+| . +.++++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 455566666666665432 23335556666666666542 11 1222 1 2566677777777776654
Q ss_pred -----cCcccccCCCCcEEeccCccccccchhh----hcCC---------CCCcEEEeecCccccccccccchhhhhchH
Q 048180 554 -----FPDGMNHLTKLLFLNLSRTRVRNFPLHL----VTSL---------HNLQEFSMIGCDLLCLPRSLMQEDYAAFIE 615 (824)
Q Consensus 554 -----lp~~i~~L~~L~~L~l~~~~~~~~~~~~----l~~L---------~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 615 (824)
+|..+.++++|++|++++|.+....... +..+ ++|++|++++|.+... ....+..
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~l~~ 181 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-------SMKEWAK 181 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-------GHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-------HHHHHHH
Confidence 5666667777777777777663322211 2233 6777777777654311 1112224
Q ss_pred hhhcCCCccEEEEEecCcc
Q 048180 616 DVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 616 ~l~~L~~L~~L~l~~~~~~ 634 (824)
.+..+++|+.|++++|.+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHCTTCCEEECCSSCCC
T ss_pred HHHhCCCcCEEECcCCCCC
Confidence 5556666777776666554
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=6.4e-14 Score=137.66 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=90.6
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcc-ccccccCcccccEEecc
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGI-LPKSLSSLKYLTVLLLQ 524 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L~L~ 524 (824)
..++++++.++.+..++.+..+++|++|++++|. ...++ .+..+++|++|++++|.+.. .|..++.+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3566777777766666666666677777776663 33333 24566677777777766643 45566666667777666
Q ss_pred cccccccCC-CcccCCCccEEeccCCC-CcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 525 NCIYLTCLP-SLAELVELMVLDVSGSG-IAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 525 ~c~~~~~lp-~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
+|......| .++++++|++|++++|. +..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 654333344 36666666666666665 66665 4666666666666666665554 25666666666666654
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=4.1e-15 Score=162.94 Aligned_cols=258 Identities=15% Similarity=0.093 Sum_probs=171.3
Q ss_pred CCcEEEecCCCCccccccccCcccccEEeccccccccc----CC-CcccCCCccEEeccCCCCc----ccCccc------
Q 048180 494 NLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTC----LP-SLAELVELMVLDVSGSGIA----EFPDGM------ 558 (824)
Q Consensus 494 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~----lp-~i~~L~~L~~L~l~~~~l~----~lp~~i------ 558 (824)
.|++..+....+..++..+..+++|++|+|++|..... ++ .+.++++|++|++++|.+. .+|.++
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 34444555555677788888899999999999754332 33 3678999999999997555 345444
Q ss_pred -ccCCCCcEEeccCccccc-----cchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcC---------CCc
Q 048180 559 -NHLTKLLFLNLSRTRVRN-----FPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKL---------RNL 623 (824)
Q Consensus 559 -~~L~~L~~L~l~~~~~~~-----~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L---------~~L 623 (824)
.++++|++|++++|.+.. ++ ..+.++++|++|++++|.+... ....+...+..+ ++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTPLEHLYLHNNGLGPQ-------AGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHH-HHHHHCTTCCEEECCSSCCHHH-------HHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHH-HHHHhCCCCCEEECcCCCCCHH-------HHHHHHHHHHHHhhhhhcccCCCC
Confidence 688999999999998855 43 3478899999999999875321 111223334455 888
Q ss_pred cEEEEEecCcc--chhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccce----
Q 048180 624 NVFDFTFVSLQ--SFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAVT---- 697 (824)
Q Consensus 624 ~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~---- 697 (824)
+.|++++|.+. ..+.+... ....++|++|.+.+|.-..
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~------------------------------------l~~~~~L~~L~L~~n~l~~~g~~ 205 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKT------------------------------------FQSHRLLHTVKMVQNGIRPEGIE 205 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHH------------------------------------HHHCTTCCEEECCSSCCCHHHHH
T ss_pred cEEECCCCCCCcHHHHHHHHH------------------------------------HHhCCCcCEEECcCCCCCHhHHH
Confidence 99999888775 22222100 0123467777777664321
Q ss_pred --ee-ccccCCCCCEEEEecCCCc-----cccccchhhhhccccceeccccccchhhhhcccCCCCCCCc--ccccccCe
Q 048180 698 --QM-TIPNLQNLKFLEIFNCEGL-----KYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQ--VCWRSLRK 767 (824)
Q Consensus 698 --~~-~l~~l~~L~~L~L~~c~~l-----~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~--~~~p~L~~ 767 (824)
.. .+..+++|+.|+|++|. + ..++ ..+..+++|+.|+|++|. +....... .+..+ +.+++|++
T Consensus 206 ~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~--~~l~~~~~L~~L~L~~n~-i~~~~~~~---l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 206 HLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA--IALKSWPNLRELGLNDCL-LSARGAAA---VVDAFSKLENIGLQT 278 (386)
T ss_dssp HHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH--HHGGGCTTCCEEECTTCC-CCHHHHHH---HHHHHHTCSSCCCCE
T ss_pred HHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH--HHHccCCCcCEEECCCCC-CchhhHHH---HHHHHhhccCCCeEE
Confidence 11 46678999999999864 4 3332 246788999999999885 43331000 00011 23789999
Q ss_pred EeccCCcchhc-----cccCc-ccCCCccEEEecCCCCcCCCC
Q 048180 768 LILSNLPELRF-----MYSGE-AQCDFVQTIGIWSCCKLERFP 804 (824)
Q Consensus 768 L~l~~~~~L~~-----~~~~~-~~lpsL~~L~i~~C~~L~~lp 804 (824)
|+|++|. +.. +|..+ .++|+|+.|++++|+ +....
T Consensus 279 L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~ 319 (386)
T 2ca6_A 279 LRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEED 319 (386)
T ss_dssp EECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTS
T ss_pred EECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcch
Confidence 9999984 444 77666 568999999999974 55444
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.5e-13 Score=138.36 Aligned_cols=150 Identities=29% Similarity=0.396 Sum_probs=127.7
Q ss_pred ccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc-ccCcccccEEecccc
Q 048180 448 VERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS-LSSLKYLTVLLLQNC 526 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~c 526 (824)
.+.++..++.+..+|... .++|++|++++|. +..+++..|..+++|++|+|++|.+..+|.. +..+.+|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 356777788888887622 3889999999997 4556555678999999999999999888864 589999999999997
Q ss_pred cccccCC-C-cccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcccc
Q 048180 527 IYLTCLP-S-LAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 527 ~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 600 (824)
.++.+| . +..+++|++|++++|+++.+|..+..+++|++|++++|.+..+++..+..+++|+.|++.+|.+..
T Consensus 99 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 -QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 566666 3 789999999999999999999999999999999999999999988778999999999999987543
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=3.5e-14 Score=146.27 Aligned_cols=167 Identities=18% Similarity=0.226 Sum_probs=127.8
Q ss_pred ccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEeccccc
Q 048180 448 VERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCI 527 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~ 527 (824)
+..+.+.++.+..++.+..+++|++|++++|. +..++. +..+++|++|+|++|.+..+|. +..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N- 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-IQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN- 95 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSC-CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCC-cccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-
Confidence 34445555666666666777888888888885 556662 5788888888888888888877 888888888888885
Q ss_pred ccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccc
Q 048180 528 YLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQ 607 (824)
Q Consensus 528 ~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~ 607 (824)
.++.+|.+.. .+|++|++++|.++.+| .+.++++|++|++++|.+..++ .++.+++|++|++++|.+..+
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~------ 165 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT------ 165 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC------
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch------
Confidence 5666776555 88888888888888875 5888888888888888887775 278888888888888875543
Q ss_pred hhhhhchHhhhcCCCccEEEEEecCccch
Q 048180 608 EDYAAFIEDVRKLRNLNVFDFTFVSLQSF 636 (824)
Q Consensus 608 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 636 (824)
..+..+++|+.|++++|.+...
T Consensus 166 -------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------HHhccCCCCCEEeCCCCcccCC
Confidence 3467788888888888876543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=6.2e-14 Score=161.12 Aligned_cols=182 Identities=18% Similarity=0.251 Sum_probs=149.5
Q ss_pred eccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccC
Q 048180 453 LMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCL 532 (824)
Q Consensus 453 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~l 532 (824)
+..+.+..+.....+++|+.|++++|. +..++. +..+++|+.|+|++|.+..+|. +..+.+|++|+|++| .+..+
T Consensus 28 l~~~~i~~~~~~~~L~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l 102 (605)
T 1m9s_A 28 LKKKSVTDAVTQNELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDL 102 (605)
T ss_dssp TTCSCTTSEECHHHHTTCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCC
T ss_pred ccCCCcccccchhcCCCCCEEECcCCC-CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCC
Confidence 334444444456678899999999986 566664 6899999999999999988887 999999999999997 57778
Q ss_pred CCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhh
Q 048180 533 PSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAA 612 (824)
Q Consensus 533 p~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~ 612 (824)
|.+..+++|++|+|++|.+..+| .+..|++|+.|++++|.+..++ .++.+++|+.|++++|.+...+
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~~~---------- 169 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---------- 169 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGGSCTTCSEEECCSSCCCCCG----------
T ss_pred hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch--hhcccCCCCEEECcCCcCCCch----------
Confidence 89999999999999999999875 6899999999999999998873 3899999999999999865431
Q ss_pred chHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccC
Q 048180 613 FIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGAL 658 (824)
Q Consensus 613 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 658 (824)
.+..+++|+.|+++.|.+..++. ...+++|+.|.++.+.+
T Consensus 170 ---~l~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 170 ---PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ---GGTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECCSEEE
T ss_pred ---hhccCCCCCEEECcCCCCCCChH---HccCCCCCEEEccCCcC
Confidence 27889999999999998887653 23556777777765544
No 105
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=3e-13 Score=149.48 Aligned_cols=287 Identities=16% Similarity=0.119 Sum_probs=161.0
Q ss_pred ceEEEE--EcCCCChHhHHHHHHHHHHHhhhc-cccc-eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 100 AVVLGV--CGASGVGKTEAGAHVYNRILNQYR-SHFN-TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~~-~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
..++.| +|++|+||||||+.+++.....+. ..|+ ..+|+.+....+...++..++.+++....... .....+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~ 126 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRG---APALDIL 126 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTT---CCHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCHHHHH
Confidence 345555 999999999999999988654210 0122 35788776777889999999998865422111 1112333
Q ss_pred HHHHHHHc--CCeEEEEEeCCCcccc--------cchh-cCC--CC--C--CCcEEEEEcCChhhhhccc---------c
Q 048180 176 NALQTLLE--TGKILLILDNMRKAFS--------LEEI-GIP--TL--S--NSLRIIITSPSSSLCRQMK---------C 229 (824)
Q Consensus 176 ~~l~~~l~--~kr~LlVlDdv~~~~~--------~~~l-~~~--~~--~--~gs~IivTTr~~~v~~~~~---------~ 229 (824)
..+.+.+. +++++|||||+|.... +..+ ... .. + .+..||+||+...+...+. .
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~ 206 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI 206 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhc
Confidence 44444443 7899999999987432 2221 111 11 2 2335787887654321111 1
Q ss_pred ccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhC------CChHHHHHHHHHH---hhhcC---CChHH
Q 048180 230 RERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCG------GLPLAIITFAKHH---LKFIG---FDFIS 297 (824)
Q Consensus 230 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------GlPlai~~~g~~l---~~~~~---~~~~~ 297 (824)
...+.+.+++.++++++|...+..... ...--.+....|++.|+ |.|..+..+.... +.... -+.+.
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~ 285 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDL 285 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 123899999999999999765432111 11111346778999999 9997665554322 10011 12233
Q ss_pred HHHHHHHHHhhccCchhhHHHH-HhhhhhhhhcccccccCCcchhhhhhhhhccC--CCcccchHHHHHHHH--H-hccc
Q 048180 298 WKRALMSELDAFSSLKYIEEEV-FRDLKLGYEQLNKYSSYGCNTRECLLYCAMYP--RNHAFVAEELMKDWM--T-EGLL 371 (824)
Q Consensus 298 w~~~~~~~~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp--~~~~i~~~~li~~Wi--a-eg~i 371 (824)
+..++... . ...+.-++..||.+ .+.++..++.+. .+..++..++...|. + +- .
T Consensus 286 v~~~~~~~-------------~~~~~~~~~l~~l~~~------~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 345 (412)
T 1w5s_A 286 VRKAVSEN-------------EAASIQTHELEALSIH------ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTM-Y 345 (412)
T ss_dssp HHHHHHHC-------------------CCSSSSSCHH------HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHH-------------hccchHHHHHHcCCHH------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhh-c
Confidence 33332211 1 23345567889988 899988888654 334555555554442 2 11 1
Q ss_pred cccccchHHHHhhHHHHHHHHHhcCcccccccC---cCCccccchHH
Q 048180 372 GEEMEGIDERFGKAKEILEELKDASFLVGIISD---ENEIVKMHPLM 415 (824)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~---~~~~~~mhdl~ 415 (824)
.. .. ........++++|.+.+++ ..... ..+.|++|.+.
T Consensus 346 ~~--~~--~~~~~~~~~l~~L~~~gli-~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 346 NV--KP--RGYTQYHIYLKHLTSLGLV-DAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CC--CC--CCHHHHHHHHHHHHHTTSE-EEECC-------CCEEEEC
T ss_pred CC--CC--CCHHHHHHHHHHHHhCCCE-EeecccCCCCCceeEEEeC
Confidence 11 00 0113356789999999999 65221 12456666544
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=136.62 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=113.1
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEeccccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCI 527 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~ 527 (824)
+.+++.++.+..+|.. -.+.++.|++++|......+..+|..+++|++|+|++|.+..++. .+..+.+|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4778888888777751 134567888888864333345557788888888888888877765 67888888888888864
Q ss_pred ccccCC-C-cccCCCccEEeccCCCCccc-CcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 528 YLTCLP-S-LAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 528 ~~~~lp-~-i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
++.+| . ++++++|++|++++|.++.+ |..+..+++|++|++++|.+..+++..+..+++|++|++++|.+.
T Consensus 93 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 -LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred -cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 45554 3 88888888888888888866 556788888888888888888886666888888888888887654
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.6e-13 Score=135.68 Aligned_cols=148 Identities=22% Similarity=0.333 Sum_probs=114.5
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEeccccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCI 527 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~ 527 (824)
+.+...++.+..+|... .++|+.|++++|. +..++...|..+++|++|+|++|.+..+ |..+..+.+|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 45677777777777521 2678888888885 5566666678888888888888888766 567888888888888885
Q ss_pred ccccCC-C-cccCCCccEEeccCCCCcccC-cccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 528 YLTCLP-S-LAELVELMVLDVSGSGIAEFP-DGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 528 ~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
.++.+| . +.++++|++|++++|.++.++ ..+..+++|++|++++|.+..+++..+..+++|++|++.+|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 456666 3 688888888888888888664 46778888888888888888887777888888888888887643
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=4.5e-14 Score=153.05 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=62.1
Q ss_pred CccEEEcCCCCCcccCCh----hhhcCCC-CCcEEEecCCCCccc-cccccCc-----ccccEEecccccccccCCC-c-
Q 048180 469 KLTTLFLQGNPLDLQLDN----DFFNSFP-NLKILNLSDTSMGIL-PKSLSSL-----KYLTVLLLQNCIYLTCLPS-L- 535 (824)
Q Consensus 469 ~L~~L~l~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~~~l-p~~i~~l-----~~L~~L~L~~c~~~~~lp~-i- 535 (824)
+|++|++++|. +...+. ..+..++ +|++|+|++|.+... +..+..+ .+|++|+|++|......+. +
T Consensus 23 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 36666666664 333333 3345555 566666666665433 2233332 5566666666532222221 2
Q ss_pred ---ccC-CCccEEeccCCCCcccCcc-----ccc-CCCCcEEeccCccccccch----hhhcCCC-CCcEEEeecCccc
Q 048180 536 ---AEL-VELMVLDVSGSGIAEFPDG-----MNH-LTKLLFLNLSRTRVRNFPL----HLVTSLH-NLQEFSMIGCDLL 599 (824)
Q Consensus 536 ---~~L-~~L~~L~l~~~~l~~lp~~-----i~~-L~~L~~L~l~~~~~~~~~~----~~l~~L~-~L~~L~l~~~~l~ 599 (824)
..+ ++|++|++++|.+...+.. +.. .++|++|++++|.+..... ..+..++ +|++|++++|.+.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 222 5566666666655544331 222 2456666666655532111 1123333 5666666655543
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=9.7e-14 Score=146.98 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=71.2
Q ss_pred ccEEEeccCCCcCCCC--c--cCCCCccEEEcCCCCCcccCC---hhhhcCCCCCcEEEecCCCCcccc-ccccCccccc
Q 048180 448 VERVSLMGNNLRELRT--C--PMFCKLTTLFLQGNPLDLQLD---NDFFNSFPNLKILNLSDTSMGILP-KSLSSLKYLT 519 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~--~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~ 519 (824)
++++++.+|.+..... + ..+++|++|++++|......+ ...+..+++|++|+|++|.+..+| ..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 5555555555443222 2 445555555555554332222 111234555555555555554443 3445555555
Q ss_pred EEeccccccccc--CC---CcccCCCccEEeccCCCCcccCcc----cccCCCCcEEeccCccccccchhhhcCC---CC
Q 048180 520 VLLLQNCIYLTC--LP---SLAELVELMVLDVSGSGIAEFPDG----MNHLTKLLFLNLSRTRVRNFPLHLVTSL---HN 587 (824)
Q Consensus 520 ~L~L~~c~~~~~--lp---~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~~~~~l~~L---~~ 587 (824)
+|+|++|..... ++ .++++++|++|++++|+++.+|.. +.++++|++|++++|.+....+..+..+ ++
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 252 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA 252 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence 555555432221 11 134555555555555555544432 3445555555555555544411113333 35
Q ss_pred CcEEEeecCcccc
Q 048180 588 LQEFSMIGCDLLC 600 (824)
Q Consensus 588 L~~L~l~~~~l~~ 600 (824)
|++|++++|.+..
T Consensus 253 L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 253 LNSLNLSFAGLEQ 265 (310)
T ss_dssp CCCEECCSSCCCS
T ss_pred CCEEECCCCCCCc
Confidence 5555555555443
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.1e-13 Score=135.99 Aligned_cols=151 Identities=18% Similarity=0.154 Sum_probs=112.1
Q ss_pred cCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCC-CcccCCCccE
Q 048180 465 PMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMV 543 (824)
Q Consensus 465 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~ 543 (824)
..+++|++|++++|. +..+|. +..+++|++|++++|.+..++ .+..+++|++|++++|......| .++++++|++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCC-ccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 456778888888875 446663 578888888888888776654 67888888888888865444344 5888888888
Q ss_pred EeccCCCCcc-cCcccccCCCCcEEeccCcc-ccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCC
Q 048180 544 LDVSGSGIAE-FPDGMNHLTKLLFLNLSRTR-VRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLR 621 (824)
Q Consensus 544 L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~-~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~ 621 (824)
|++++|.++. .|..++.+++|++|++++|. +..++. +..+++|++|++++|.+..++ .+..++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~-------------~l~~l~ 181 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR-------------GIEDFP 181 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT-------------TGGGCS
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH-------------HhccCC
Confidence 8888888874 66778888888888888887 677752 788888888888888755431 466778
Q ss_pred CccEEEEEecCcc
Q 048180 622 NLNVFDFTFVSLQ 634 (824)
Q Consensus 622 ~L~~L~l~~~~~~ 634 (824)
+|+.|++++|.+.
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 8888888877654
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.7e-13 Score=148.42 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=113.7
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhc-CCCCCcEEEecCCCCccccc-cccCcccccEEecccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFN-SFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNC 526 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c 526 (824)
+.+++.++.+..+|.. -.+.++.|++++|. +..++...+. .+++|++|+|++|.+..++. .+..+.+|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4566666767666651 12357777777775 4555555555 77777788887777776664 5777777788887775
Q ss_pred cccccCC-C-cccCCCccEEeccCCCCccc-CcccccCCCCcEEeccCccccccchhhh---cCCCCCcEEEeecCcccc
Q 048180 527 IYLTCLP-S-LAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSRTRVRNFPLHLV---TSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 527 ~~~~~lp-~-i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~l---~~L~~L~~L~l~~~~l~~ 600 (824)
. ++.+| . +.++++|++|+|++|.+..+ |..+..+++|++|++++|.+..+|...+ ..+++|+.|++++|.+..
T Consensus 99 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred c-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 4 45554 2 77777788888877777765 4467777778888887777777776655 567777788877777665
Q ss_pred ccccccchhhhhchHhhhcCCC--ccEEEEEecCcc
Q 048180 601 LPRSLMQEDYAAFIEDVRKLRN--LNVFDFTFVSLQ 634 (824)
Q Consensus 601 ~~~~~~~~~~~~~~~~l~~L~~--L~~L~l~~~~~~ 634 (824)
++ ...+..++. |+.|++.+|.+.
T Consensus 178 l~-----------~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LP-----------LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CC-----------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred cC-----------HHHhhhccHhhcceEEecCCCcc
Confidence 43 223444544 356777766654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=3.7e-13 Score=138.58 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=132.0
Q ss_pred cCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEec
Q 048180 444 WSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLL 523 (824)
Q Consensus 444 ~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 523 (824)
....++.|++.+|.+..++.+..+++|++|++++|. +..+++ +..+++|++|+|++|.+..+|.... .+|++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 346899999999999999888999999999999996 566666 7899999999999999998886444 99999999
Q ss_pred ccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccc
Q 048180 524 QNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCL 601 (824)
Q Consensus 524 ~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~ 601 (824)
++| .++.+|.++++++|++|++++|+++.+| .+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+...
T Consensus 114 ~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 997 5777888999999999999999999987 789999999999999999887 3489999999999999876543
No 113
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=3.1e-12 Score=137.95 Aligned_cols=292 Identities=14% Similarity=0.067 Sum_probs=164.2
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC------CHH
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED------DLK 147 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~------~~~ 147 (824)
..++++.++.+...... + +++.|+|++|+|||||++++++.. . .+|+.+.... +..
T Consensus 14 ~~gR~~el~~L~~~l~~--------~-~~v~i~G~~G~GKT~Ll~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 14 IFDREEESRKLEESLEN--------Y-PLTLLLGIRRVGKSSLLRAFLNER--------P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp SCSCHHHHHHHHHHHHH--------C-SEEEEECCTTSSHHHHHHHHHHHS--------S-EEEEEHHHHHHTTTCBCHH
T ss_pred cCChHHHHHHHHHHHhc--------C-CeEEEECCCcCCHHHHHHHHHHHc--------C-cEEEEeecccccccCCCHH
Confidence 34445555555444311 2 699999999999999999998752 2 6777765442 566
Q ss_pred HHHHHHHHhcccc--------------cCCCcchhhhHHHHHHHHHHHHcC-CeEEEEEeCCCcccc---------cchh
Q 048180 148 ELQIKIARKIDFV--------------LSSDESVRDNAILLENALQTLLET-GKILLILDNMRKAFS---------LEEI 203 (824)
Q Consensus 148 ~~~~~i~~~l~~~--------------~~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~~---------~~~l 203 (824)
.++..+...+... .............+.+.+.+..+. ++++|||||++.... +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 6777666655320 000000112334455555554443 489999999987543 1222
Q ss_pred cCCC-CCCCcEEEEEcCChhhhhc----------c-cc-ccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHH
Q 048180 204 GIPT-LSNSLRIIITSPSSSLCRQ----------M-KC-RERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIA 270 (824)
Q Consensus 204 ~~~~-~~~gs~IivTTr~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 270 (824)
.... ...+.++|+|++...+... . +. ...+++.+|+.+|+.+++...+...+.... .+.+..|+
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAV 232 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 1111 1146689999887643211 1 11 236889999999999999875432221112 24578899
Q ss_pred HHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhcc
Q 048180 271 KKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMY 350 (824)
Q Consensus 271 ~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~f 350 (824)
+.|+|.|+++..++..+. ...+...+. ..+..... ......+. .+.+ . ++. .+..+..+|.
T Consensus 233 ~~tgG~P~~l~~~~~~~~--~~~~~~~~~---~~~~~~~~--~~~~~~l~---~l~~-~-~~~------~~~~l~~la~- 293 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYL--RNGDFGRAM---KRTLEVAK--GLIMGELE---ELRR-R-SPR------YVDILRAIAL- 293 (350)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCCHHHHH---HHHHHHHH--HHHHHHHH---HHHH-H-CHH------HHHHHHHHHT-
T ss_pred HHhCCCHHHHHHHHHHHh--ccccHhHHH---HHHHHHHH--HHHHHHHH---HHHh-C-Chh------HHHHHHHHHh-
Confidence 999999999999987654 222222221 11110000 00111111 1111 2 566 8888888887
Q ss_pred CCCcccchHHHHHHHHHhccccccccchHHHHhhHHHHHHHHHhcCcccccccCcCCcccc-chHHHHHHH
Q 048180 351 PRNHAFVAEELMKDWMTEGLLGEEMEGIDERFGKAKEILEELKDASFLVGIISDENEIVKM-HPLMFDMAS 420 (824)
Q Consensus 351 p~~~~i~~~~li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~m-hdl~~dl~~ 420 (824)
. ..+...+....-+. .-.. .......+++.|.+.+++ ... .+.|++ |++++++.+
T Consensus 294 -g--~~~~~~l~~~~~~~-~~~~-------~~~~~~~~l~~L~~~gli-~~~---~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 -G--YNRWSLIRDYLAVK-GTKI-------PEPRLYALLENLKKMNWI-VEE---DNTYKIADPVVATVLR 349 (350)
T ss_dssp -T--CCSHHHHHHHHHHT-TCCC-------CHHHHHHHHHHHHHTTSE-EEE---TTEEEESSHHHHHHHT
T ss_pred -C--CCCHHHHHHHHHHH-hCCC-------CHHHHHHHHHHHHhCCCE-Eec---CCEEEEecHHHHHHHc
Confidence 2 13444444332111 1011 013456889999999999 552 245555 677777653
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.6e-13 Score=148.70 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=80.8
Q ss_pred hhhcCCCCCcEEEecCCCCcccc-----ccccCcc-cccEEecccccccccCC-CcccC-----CCccEEeccCCCCccc
Q 048180 487 DFFNSFPNLKILNLSDTSMGILP-----KSLSSLK-YLTVLLLQNCIYLTCLP-SLAEL-----VELMVLDVSGSGIAEF 554 (824)
Q Consensus 487 ~~~~~l~~Lr~L~L~~~~~~~lp-----~~i~~l~-~L~~L~L~~c~~~~~lp-~i~~L-----~~L~~L~l~~~~l~~l 554 (824)
.++...++|++|+|++|.+...+ ..+..++ +|++|+|++|..-...+ .+..+ ++|++|++++|.+...
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 34445555777777777765554 3455666 67777777763322223 24443 6777777777776644
Q ss_pred Ccc-----cccC-CCCcEEeccCccccccchhhh----cC-CCCCcEEEeecCccccccccccchhhhhchHhhhcCC-C
Q 048180 555 PDG-----MNHL-TKLLFLNLSRTRVRNFPLHLV----TS-LHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLR-N 622 (824)
Q Consensus 555 p~~-----i~~L-~~L~~L~l~~~~~~~~~~~~l----~~-L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~-~ 622 (824)
+.. +..+ ++|++|++++|.+...+...+ .. .++|++|++++|.+... +.......+..++ +
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------SSDELIQILAAIPAN 168 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------HHHHHHHHHhcCCcc
Confidence 332 3344 677777777777655544332 23 24777777777654331 1112334445554 6
Q ss_pred ccEEEEEecCccc
Q 048180 623 LNVFDFTFVSLQS 635 (824)
Q Consensus 623 L~~L~l~~~~~~~ 635 (824)
|+.|++++|.+..
T Consensus 169 L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 169 VNSLNLRGNNLAS 181 (362)
T ss_dssp CCEEECTTSCGGG
T ss_pred ccEeeecCCCCch
Confidence 7777777776654
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=4.8e-13 Score=144.77 Aligned_cols=170 Identities=26% Similarity=0.365 Sum_probs=137.0
Q ss_pred ceecCCcccceeeccccCCCccEEEeccCCCcCCCC--cc-CCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC
Q 048180 428 WFFKPGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CP-MFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS 504 (824)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 504 (824)
.+...+..+..+|. ..+..++.|++++|.+..++. +. .+++|++|++++|. +..+++..|..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc
Confidence 34445566777776 456678999999999888776 54 88999999999986 566776667899999999999999
Q ss_pred Cccccc-cccCcccccEEecccccccccCC-CcccCCCccEEeccCCCCcccCccc----ccCCCCcEEeccCccccccc
Q 048180 505 MGILPK-SLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEFPDGM----NHLTKLLFLNLSRTRVRNFP 578 (824)
Q Consensus 505 ~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~~~~~ 578 (824)
+..+|. .+..+.+|++|+|++|......| .+.++++|++|+|++|.++.+|..+ ..+++|++|++++|.+..+|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 988876 57899999999999875444445 4899999999999999999998875 57899999999999998888
Q ss_pred hhhhcCCCC--CcEEEeecCccc
Q 048180 579 LHLVTSLHN--LQEFSMIGCDLL 599 (824)
Q Consensus 579 ~~~l~~L~~--L~~L~l~~~~l~ 599 (824)
...+..++. |+.|++.+|.+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhhhccHhhcceEEecCCCcc
Confidence 777888887 488999988754
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=1.5e-12 Score=128.98 Aligned_cols=146 Identities=25% Similarity=0.338 Sum_probs=116.1
Q ss_pred cEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc-ccCcccccEEeccccc
Q 048180 449 ERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS-LSSLKYLTVLLLQNCI 527 (824)
Q Consensus 449 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~c~ 527 (824)
+.+...++.+..+|.. -.++|++|++++|. +..++...+..+++|++|++++|.+..+|.. +..+.+|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4556666666666642 24588899999886 5567777778889999999999988888764 5788999999999864
Q ss_pred ccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCc
Q 048180 528 YLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCD 597 (824)
Q Consensus 528 ~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 597 (824)
++.+| . ++++++|++|++++|.++.+|.. +.++++|++|++++|.+..+++..+.++++|++|++++|.
T Consensus 88 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 88 -LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 55666 3 78899999999999988887765 6788999999999998888887778889999999998875
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=6.7e-13 Score=132.68 Aligned_cols=149 Identities=19% Similarity=0.295 Sum_probs=126.4
Q ss_pred cEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC-CcccCCCccEEeccC
Q 048180 471 TTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSG 548 (824)
Q Consensus 471 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~ 548 (824)
+.+++.++. +..+|..+ .+.|+.|+|++|.+..+|. .+..+.+|++|+|++|......| .+.++++|++|+|++
T Consensus 14 ~~v~c~~~~-l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSC-CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCC-cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 578888775 66777653 3789999999999988876 78999999999999975444446 499999999999999
Q ss_pred CCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEE
Q 048180 549 SGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFD 627 (824)
Q Consensus 549 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 627 (824)
|.++.+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.+..++. ..+..+++|+.|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-----------GTFSPLRAIQTMH 158 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-----------HHHhCCCCCCEEE
Confidence 999999986 5789999999999999999988889999999999999998776542 2367789999999
Q ss_pred EEecCcc
Q 048180 628 FTFVSLQ 634 (824)
Q Consensus 628 l~~~~~~ 634 (824)
+++|.+.
T Consensus 159 L~~N~~~ 165 (220)
T 2v9t_B 159 LAQNPFI 165 (220)
T ss_dssp CCSSCEE
T ss_pred eCCCCcC
Confidence 9988764
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=5.8e-13 Score=132.03 Aligned_cols=158 Identities=25% Similarity=0.314 Sum_probs=131.9
Q ss_pred CCcccceeeccccCCCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc
Q 048180 432 PGRRLRKFVYEDWSGDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP 509 (824)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp 509 (824)
.+..+..+|. .....+++|++.+|.+..++. +..+++|++|++++|. +..++...|..+++|++|+|++|.+..+|
T Consensus 15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 15 YSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp CSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 3444555554 345689999999999998876 7789999999999996 56788777889999999999999998888
Q ss_pred cc-ccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCC
Q 048180 510 KS-LSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSL 585 (824)
Q Consensus 510 ~~-i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L 585 (824)
.. +..+.+|++|++++| .++.+| . +.++++|++|++++|.++.+|.. +..+++|++|++++|.+ .+.+
T Consensus 93 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-------~~~~ 164 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-------DCTC 164 (208)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------CCCT
T ss_pred HhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------ecCC
Confidence 75 689999999999997 456666 4 89999999999999999988876 78899999999999854 3456
Q ss_pred CCCcEEEeecCccc
Q 048180 586 HNLQEFSMIGCDLL 599 (824)
Q Consensus 586 ~~L~~L~l~~~~l~ 599 (824)
++|+.|+++.|.+.
T Consensus 165 ~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 165 PGIRYLSEWINKHS 178 (208)
T ss_dssp TTTHHHHHHHHHCT
T ss_pred CCHHHHHHHHHhCC
Confidence 78888888877654
No 119
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=1.1e-11 Score=134.04 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-----CCHHH
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-----DDLKE 148 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-----~~~~~ 148 (824)
..++++.++.+.. . .. +++.|+|++|+|||||++++++.... ..+|+..... .+...
T Consensus 15 ~~gR~~el~~L~~-l--------~~--~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 15 FFDREKEIEKLKG-L--------RA--PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SCCCHHHHHHHHH-T--------CS--SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGGGTTCSCCCHHH
T ss_pred hcChHHHHHHHHH-h--------cC--CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchhhccccCCCHHH
Confidence 4455666666655 4 12 69999999999999999999987521 2578877643 34455
Q ss_pred HHHHHHHhccc------------------ccCC-Ccc------hhhhHHHHHHHHHHHHcCCeEEEEEeCCCccc-----
Q 048180 149 LQIKIARKIDF------------------VLSS-DES------VRDNAILLENALQTLLETGKILLILDNMRKAF----- 198 (824)
Q Consensus 149 ~~~~i~~~l~~------------------~~~~-~~~------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----- 198 (824)
+...+.+.+.. .... ... .......+.+.+.+.-+ ++++|||||++...
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 55554443311 0000 000 11233445555543322 49999999997642
Q ss_pred ccc-hhc-CCCCCCCcEEEEEcCChhhhhc----------c-cc-ccccccCCCChHHHHHHHHHHhcCcCCCCchhHHH
Q 048180 199 SLE-EIG-IPTLSNSLRIIITSPSSSLCRQ----------M-KC-RERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEF 264 (824)
Q Consensus 199 ~~~-~l~-~~~~~~gs~IivTTr~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~ 264 (824)
+|. .+. ......+.++|+|+|....... . +. ...+++.+|+.+++.+++...+...+. ..+..
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~-- 232 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKDY-- 232 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCCH--
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCcH--
Confidence 222 221 1111135689999998653211 1 11 247889999999999999875432221 11111
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHHHHHHHhhccCchhhHHHHHhhhh-hhh--hcccccccCCcchh
Q 048180 265 GLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRALMSELDAFSSLKYIEEEVFRDLK-LGY--EQLNKYSSYGCNTR 341 (824)
Q Consensus 265 ~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~~~~~~k 341 (824)
..|++.|+|.|+++..++..+. ...+...|.. .+... ....+...+. +.+ ..+++. .+
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~~--~~~~~~~~~~---~~~~~------~~~~~~~~l~~~~~~~~~l~~~------~~ 293 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIYL--DNKNLDFAIN---QTLEY------AKKLILKEFENFLHGREIARKR------YL 293 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHHH--HHCCHHHHHH---HHHHH------HHHHHHHHHHHHHTTCGGGHHH------HH
T ss_pred --HHHHHHhCCCHHHHHHHHHHHc--cccchHHHHH---HHHHH------HHHHHHHHHHHHhhccccccHH------HH
Confidence 7899999999999999998765 2233333321 11100 0011111111 111 157777 89
Q ss_pred hhhhhhhccCCCcccchHHHHHHHH-Hhcc-ccccccchHHHHhhHHHHHHHHHhcCcccccccCcCCccc-cchHHHHH
Q 048180 342 ECLLYCAMYPRNHAFVAEELMKDWM-TEGL-LGEEMEGIDERFGKAKEILEELKDASFLVGIISDENEIVK-MHPLMFDM 418 (824)
Q Consensus 342 ~cfl~~s~fp~~~~i~~~~li~~Wi-aeg~-i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~-mhdl~~dl 418 (824)
..+..+|.-+ +...+....- ..|. +. ......+++.|.+.+++ ... ...|+ .|+++++.
T Consensus 294 ~~l~~la~g~-----~~~~l~~~~~~~~g~~~~---------~~~~~~~L~~L~~~gli-~~~---~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 294 NIMRTLSKCG-----KWSDVKRALELEEGIEIS---------DSEIYNYLTQLTKHSWI-IKE---GEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHTTCB-----CHHHHHHHHHHHHCSCCC---------HHHHHHHHHHHHHTTSE-EES---SSCEEESSHHHHHH
T ss_pred HHHHHHHcCC-----CHHHHHHHHHHhcCCCCC---------HHHHHHHHHHHHhCCCE-Eec---CCEEEecCHHHHHh
Confidence 9999888821 3344332110 1121 11 13456789999999999 552 24566 47777765
Q ss_pred H
Q 048180 419 A 419 (824)
Q Consensus 419 ~ 419 (824)
.
T Consensus 356 l 356 (357)
T 2fna_A 356 F 356 (357)
T ss_dssp T
T ss_pred h
Confidence 3
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=7.3e-13 Score=126.40 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=66.9
Q ss_pred CCCcEEEecCCCCc--cccccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcc-cCcccccCCCCcEEec
Q 048180 493 PNLKILNLSDTSMG--ILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAE-FPDGMNHLTKLLFLNL 569 (824)
Q Consensus 493 ~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 569 (824)
++|+.|++++|.+. .+|..+..+++|++|++++|. ++.++.++.+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44555555555554 555555555555555555543 3333445555555555555555554 4444444555555555
Q ss_pred cCccccccch-hhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccc
Q 048180 570 SRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS 635 (824)
Q Consensus 570 ~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 635 (824)
++|.+..++. ..+..+++|++|++++|.+...+.. ....+..+++|+.|++..|....
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~--------~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY--------RESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH--------HHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH--------HHHHHHhCccCcEecCCCCChhh
Confidence 5555544432 2355555555555555544332210 01234455555555555554443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=5.6e-13 Score=127.19 Aligned_cols=134 Identities=20% Similarity=0.207 Sum_probs=109.9
Q ss_pred CCCccEEEcCCCCCc-ccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCC-cccCCCccEE
Q 048180 467 FCKLTTLFLQGNPLD-LQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPS-LAELVELMVL 544 (824)
Q Consensus 467 ~~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L 544 (824)
.++|+.|++++|... ..+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.....+|. ++++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888643 366654 57889999999999998877 7788999999999998764444775 6779999999
Q ss_pred eccCCCCcccC--cccccCCCCcEEeccCccccccch---hhhcCCCCCcEEEeecCcccccc
Q 048180 545 DVSGSGIAEFP--DGMNHLTKLLFLNLSRTRVRNFPL---HLVTSLHNLQEFSMIGCDLLCLP 602 (824)
Q Consensus 545 ~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~---~~l~~L~~L~~L~l~~~~l~~~~ 602 (824)
++++|.++.+| ..+..+++|++|++++|.+..+|+ ..+..+++|++|++.+|.+..++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 99999999877 678899999999999999988876 56889999999999998766554
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=1.9e-12 Score=147.11 Aligned_cols=170 Identities=20% Similarity=0.216 Sum_probs=85.7
Q ss_pred CCcccceeeccccCCCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc
Q 048180 432 PGRRLRKFVYEDWSGDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS 511 (824)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 511 (824)
.+..+..+|.. ....++.|++++|.+..+| ..+++|++|++++|. +..+|. +.. +|++|+|++|.+..+|.
T Consensus 67 s~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~--l~~--~L~~L~Ls~N~l~~lp~- 137 (571)
T 3cvr_A 67 NRLNLSSLPDN-LPPQITVLEITQNALISLP--ELPASLEYLDACDNR-LSTLPE--LPA--SLKHLDVDNNQLTMLPE- 137 (571)
T ss_dssp CSSCCSCCCSC-CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC-CSCCCC--CCT--TCCEEECCSSCCSCCCC-
T ss_pred CCCCCCccCHh-HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCC-CCCcch--hhc--CCCEEECCCCcCCCCCC-
Confidence 33344444432 2345555555555555555 344555555555554 233444 222 55555665555555554
Q ss_pred ccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCC---
Q 048180 512 LSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNL--- 588 (824)
Q Consensus 512 i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L--- 588 (824)
.+.+|++|++++| .++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.+..+|. +.. +|
T Consensus 138 --~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~ 205 (571)
T 3cvr_A 138 --LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--VPV--RNHHS 205 (571)
T ss_dssp --CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--CC--------
T ss_pred --cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--HHH--hhhcc
Confidence 4555555555554 2344554 44555556665555555555 43 555566665555555544 222 44
Q ss_pred ----cEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 589 ----QEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 589 ----~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
+.|++++|.+..+| ..+..+++|+.|++++|.+.
T Consensus 206 ~~~L~~L~Ls~N~l~~lp------------~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 206 EETEIFFRCRENRITHIP------------ENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp --CCEEEECCSSCCCCCC------------GGGGGSCTTEEEECCSSSCC
T ss_pred cccceEEecCCCcceecC------------HHHhcCCCCCEEEeeCCcCC
Confidence 55555555544332 12334555556666555554
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=2.2e-12 Score=146.57 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=146.6
Q ss_pred CCccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEeccc
Q 048180 446 GDVERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQN 525 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 525 (824)
..++.|++.+|.+..+|... .++|++|++++|. +..+| ..+++|++|+|++|.+..+|. +.. +|++|+|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNA-LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCC-Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 36889999999998887622 4889999999996 45777 357899999999999988988 665 999999999
Q ss_pred ccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccc
Q 048180 526 CIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSL 605 (824)
Q Consensus 526 c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~ 605 (824)
| .++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+..+|. +. ++|+.|++++|.+..+|. .
T Consensus 130 N-~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 130 N-QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp S-CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-C
T ss_pred C-cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-H
Confidence 6 4666888 78999999999999999987 67899999999999988876 55 899999999998877654 2
Q ss_pred cchhhhhchHhh-hcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccC
Q 048180 606 MQEDYAAFIEDV-RKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGAL 658 (824)
Q Consensus 606 ~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 658 (824)
...+ .....|+.|++++|.+..+|..+. .+++|+.|+++.+.+
T Consensus 199 --------~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 199 --------PVRNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIILEDNPL 242 (571)
T ss_dssp --------C--------CCEEEECCSSCCCCCCGGGG--GSCTTEEEECCSSSC
T ss_pred --------HHhhhcccccceEEecCCCcceecCHHHh--cCCCCCEEEeeCCcC
Confidence 1111 222345999999999998887664 378899998887765
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.5e-12 Score=130.14 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=125.6
Q ss_pred ccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc--cccCcccccEEecccccccccCC--CcccCCCccEEe
Q 048180 470 LTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK--SLSSLKYLTVLLLQNCIYLTCLP--SLAELVELMVLD 545 (824)
Q Consensus 470 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~--~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~~L~ 545 (824)
-++++++++. +..+|..+ ...+++|+|++|.+..++. .+..+.+|++|+|++|. ++.+| .++++++|++|+
T Consensus 13 ~~~l~~s~n~-l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCC-cccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEE
Confidence 3689999885 66788643 4567999999999988843 47899999999999975 55555 499999999999
Q ss_pred ccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCcc
Q 048180 546 VSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLN 624 (824)
Q Consensus 546 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 624 (824)
+++|.++.+|.. +..+++|++|++++|.+..+++..+.++++|++|++++|.+..++ +..+..+++|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~ 156 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-----------PGAFDTLHSLS 156 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-----------TTTTTTCTTCC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-----------HHHhcCCCCCC
Confidence 999999988775 889999999999999999987777999999999999999876653 23577889999
Q ss_pred EEEEEecCcc
Q 048180 625 VFDFTFVSLQ 634 (824)
Q Consensus 625 ~L~l~~~~~~ 634 (824)
.|++++|.+.
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 9999988765
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=2.3e-12 Score=129.70 Aligned_cols=149 Identities=22% Similarity=0.292 Sum_probs=126.5
Q ss_pred CccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEecccccccccCC-C-cccCCCccEEe
Q 048180 469 KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLD 545 (824)
Q Consensus 469 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~ 545 (824)
..+.++++++. +..+|..+ .++|++|+|++|.+..+ |..+..+.+|++|+|++|. ++.+| . +.++++|++|+
T Consensus 20 s~~~v~c~~~~-l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKR-HASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCC-cCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEE
Confidence 35678888774 67788643 48899999999999877 5678999999999999975 67777 4 79999999999
Q ss_pred ccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCcc
Q 048180 546 VSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLN 624 (824)
Q Consensus 546 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 624 (824)
+++|.++.+|.. +..+++|++|++++|.+..+|.. +..+++|++|++++|.+..++. ..+..+++|+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~ 162 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPH-----------GAFDRLSSLT 162 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCT-----------TTTTTCTTCC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCH-----------HHHhCCCCCC
Confidence 999999988876 58899999999999999999866 7999999999999998776542 2477889999
Q ss_pred EEEEEecCcc
Q 048180 625 VFDFTFVSLQ 634 (824)
Q Consensus 625 ~L~l~~~~~~ 634 (824)
.|++.+|.+.
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 9999988765
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.1e-12 Score=122.28 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=54.2
Q ss_pred CccEEEcCCCCCc-ccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCC-cccCCCccEEec
Q 048180 469 KLTTLFLQGNPLD-LQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPS-LAELVELMVLDV 546 (824)
Q Consensus 469 ~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L~l 546 (824)
+|+.|++++|... ..+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.....+|. ++++++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444322 13333 234444555555555544444 3444444555555544332222332 334445555555
Q ss_pred cCCCCcccC--cccccCCCCcEEeccCccccccch---hhhcCCCCCcEEEe
Q 048180 547 SGSGIAEFP--DGMNHLTKLLFLNLSRTRVRNFPL---HLVTSLHNLQEFSM 593 (824)
Q Consensus 547 ~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~---~~l~~L~~L~~L~l 593 (824)
++|.++.+| ..++.+++|++|++++|.+...++ ..++.+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555444433 344444455555555444444433 23444444444443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.7e-12 Score=118.80 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=108.5
Q ss_pred CCCCCcEEEecCCCCc--cccccccCcccccEEecccccccccCCCcccCCCccEEeccCCCCcc-cCcccccCCCCcEE
Q 048180 491 SFPNLKILNLSDTSMG--ILPKSLSSLKYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAE-FPDGMNHLTKLLFL 567 (824)
Q Consensus 491 ~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L 567 (824)
..++|+.|++++|.+. .+|..++.+++|++|++++| .++.++.++++++|++|++++|.+.. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999997 89998899999999999997 46666779999999999999999997 88778889999999
Q ss_pred eccCccccccc-hhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEE
Q 048180 568 NLSRTRVRNFP-LHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFT 629 (824)
Q Consensus 568 ~l~~~~~~~~~-~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 629 (824)
++++|.+..++ +..++.+++|++|++++|.+...+.. ....+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY--------RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH--------HHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH--------HHHHHHHCCCcccccCC
Confidence 99999998765 25589999999999999987654321 02357778888887654
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=6.2e-12 Score=148.31 Aligned_cols=152 Identities=22% Similarity=0.258 Sum_probs=96.3
Q ss_pred CCccEEEeccCCCcCCCC-ccCCCCccEEEcC-----CCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCccccc
Q 048180 446 GDVERVSLMGNNLRELRT-CPMFCKLTTLFLQ-----GNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLT 519 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~-----~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~ 519 (824)
..++++++.++.+...+. .....+|+.+.+. .|. ..+++..+..++.|+.|+|++|.+..+|..+..+.+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~--~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR--MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc--eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 457778887776665443 2233333333332 222 12455567888999999999999989998888999999
Q ss_pred EEecccccccccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcc
Q 048180 520 VLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 520 ~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l 598 (824)
+|+|++| .++.+| .+++|++|++|+|++|.++.+|..+++|++|++|++++|.+..+|.. |++|++|++|++++|.+
T Consensus 251 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCcc
Confidence 9999986 455888 49999999999999999999999999999999999999998888876 89999999999999987
Q ss_pred ccc
Q 048180 599 LCL 601 (824)
Q Consensus 599 ~~~ 601 (824)
...
T Consensus 329 ~~~ 331 (727)
T 4b8c_D 329 EKQ 331 (727)
T ss_dssp CSH
T ss_pred CCC
Confidence 654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=3.8e-12 Score=122.38 Aligned_cols=128 Identities=18% Similarity=0.241 Sum_probs=59.7
Q ss_pred cCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCC-C-cccCCCcc
Q 048180 465 PMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELM 542 (824)
Q Consensus 465 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~ 542 (824)
..+++|+.|++++|. +..++. +....++|++|++++|.+..+ ..++.+++|++|++++|. ++.+| . ++.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 344455555555553 223332 212222555555555555444 344555555555555532 33333 2 24555555
Q ss_pred EEeccCCCCcccCc--ccccCCCCcEEeccCccccccchh---hhcCCCCCcEEEeecC
Q 048180 543 VLDVSGSGIAEFPD--GMNHLTKLLFLNLSRTRVRNFPLH---LVTSLHNLQEFSMIGC 596 (824)
Q Consensus 543 ~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~---~l~~L~~L~~L~l~~~ 596 (824)
+|++++|.+..+|. .+..+++|++|++++|.+..+|.. .++.+++|+.|+++.|
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 55555555555444 444555555555555554444332 2444444555444444
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=7.1e-12 Score=120.48 Aligned_cols=137 Identities=17% Similarity=0.209 Sum_probs=114.5
Q ss_pred hcCCCCCcEEEecCCCCccccccccCcc-cccEEecccccccccCCCcccCCCccEEeccCCCCcccCccc-ccCCCCcE
Q 048180 489 FNSFPNLKILNLSDTSMGILPKSLSSLK-YLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGM-NHLTKLLF 566 (824)
Q Consensus 489 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~ 566 (824)
+..+.+|+.|++++|.+..+|. +..+. +|++|++++| .++.++.++++++|++|++++|.++.+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4678899999999999998865 55555 9999999997 4666678999999999999999999998776 89999999
Q ss_pred EeccCccccccch-hhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccc
Q 048180 567 LNLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS 635 (824)
Q Consensus 567 L~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 635 (824)
|++++|.+..+|. ..++.+++|++|++++|.+...+.. ....+..+++|+.|+++.+....
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~--------~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY--------RLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH--------HHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH--------HHHHHHHCCccceeCCCcCCHHH
Confidence 9999999988875 3588999999999999987654321 12247788999999999887654
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.8e-11 Score=119.38 Aligned_cols=124 Identities=21% Similarity=0.271 Sum_probs=94.5
Q ss_pred cEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCC-C-cccCCCccEEeccC
Q 048180 471 TTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSG 548 (824)
Q Consensus 471 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~ 548 (824)
++++++++. +..+|..+ .+.|++|+|++|.+..+|..+..+.+|++|+|++|. ++.++ . +.++++|++|++++
T Consensus 13 ~~l~~~~~~-l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSC-CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 456666654 45566543 357888888888888888888888888888888864 45555 3 88888888888888
Q ss_pred CCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 549 SGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 549 ~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
|.++.+|. .+..+++|++|++++|.+..+|+..+..+++|+.|++.+|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88887765 5788888888888888888888777888888888888887643
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.6e-11 Score=119.83 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=85.8
Q ss_pred cEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc--ccCcccccEEecccccccccCC-CcccCCCccEEecc
Q 048180 471 TTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS--LSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVS 547 (824)
Q Consensus 471 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~ 547 (824)
++++++++. +..+|..+ ...|++|++++|.+..++.. ++.+.+|++|+|++|......| .++++++|++|+++
T Consensus 11 ~~l~~s~~~-l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSC-CSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC-cCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 456666654 45555533 23677777777777766653 6777777777777764433335 37777788888888
Q ss_pred CCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 548 GSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 548 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
+|+++.+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8877766554 677788888888888777776666777888888888777644
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=4.1e-11 Score=116.84 Aligned_cols=125 Identities=14% Similarity=0.331 Sum_probs=109.2
Q ss_pred cEEEecCCCCccccccccCcccccEEecccccccccCC-C--cccCCCccEEeccCCCCccc-CcccccCCCCcEEeccC
Q 048180 496 KILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-S--LAELVELMVLDVSGSGIAEF-PDGMNHLTKLLFLNLSR 571 (824)
Q Consensus 496 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~--i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 571 (824)
++++++++.++.+|..+.. +|++|++++| .++.+| . ++++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 7999999999999987755 9999999997 456665 3 89999999999999999977 67899999999999999
Q ss_pred ccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 572 TRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
|.+..+++..++++++|++|++++|.+...+ +..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-----------PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-----------TTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-----------HHHhhcCCCCCEEEeCCCCcc
Confidence 9999998887999999999999999876542 335778899999999988765
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=6.5e-11 Score=115.43 Aligned_cols=126 Identities=25% Similarity=0.420 Sum_probs=109.9
Q ss_pred CcEEEecCCCCccccccccCcccccEEecccccccccCC-CcccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCc
Q 048180 495 LKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRT 572 (824)
Q Consensus 495 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~ 572 (824)
-++++++++.+..+|..+. .+|++|++++| .++.+| .+.++++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3689999999999998664 68999999996 567888 59999999999999999998875 5899999999999999
Q ss_pred cccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCcc
Q 048180 573 RVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 573 ~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
.+..+++..+.++++|++|++++|.+..++.. .+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG-----------AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT-----------TTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChh-----------hhhcCccccEEEeCCCCee
Confidence 99999988899999999999999987765432 3677899999999988764
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=6e-11 Score=135.49 Aligned_cols=193 Identities=20% Similarity=0.174 Sum_probs=109.6
Q ss_pred CCccEEEeccCCCcCCCC-ccCCCCccEEEcCCCCC------------cccCChhhhcCCCCCcEEE-ecCCCCccccc-
Q 048180 446 GDVERVSLMGNNLRELRT-CPMFCKLTTLFLQGNPL------------DLQLDNDFFNSFPNLKILN-LSDTSMGILPK- 510 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~------------~~~~~~~~~~~l~~Lr~L~-L~~~~~~~lp~- 510 (824)
..+++|++++|.+..+|. +..+++|+.|++.+|.. ....++..+..+++|+.|+ ++.+.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 456677788887777776 67777888888765520 1122233345555666665 44333222221
Q ss_pred -----cccCc--ccccEEecccccccccCCCcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhc
Q 048180 511 -----SLSSL--KYLTVLLLQNCIYLTCLPSLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVT 583 (824)
Q Consensus 511 -----~i~~l--~~L~~L~L~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~ 583 (824)
.+..+ ..|++|+|++| .++.+|.++++++|++|++++|.++.+|..++++++|++|++++|.+..+| .++
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGT
T ss_pred hhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccC
Confidence 11111 24666666664 455566666666666666666666666666666666666666666666655 266
Q ss_pred CCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhh--hhhcccceeE
Q 048180 584 SLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYIS--SQHWLWLQSY 651 (824)
Q Consensus 584 ~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L 651 (824)
++++|++|++++|.+..++ .+..++.+++|+.|++++|.+...+.... ...+++|+.|
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TCSSCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 6666666666666554431 02345566666666666666655544321 1224455554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=2e-10 Score=110.39 Aligned_cols=124 Identities=21% Similarity=0.308 Sum_probs=82.4
Q ss_pred cEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc-ccCcccccEEecccccccccCC-C-cccCCCccEEecc
Q 048180 471 TTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS-LSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVS 547 (824)
Q Consensus 471 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~ 547 (824)
+.+++.++. +..+|..+ .++|+.|++++|.+..+|.. ++.+.+|++|++++| .++.+| . ++++++|++|+++
T Consensus 10 ~~l~~~~~~-l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSC-CSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCC-CccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC
Confidence 445555543 44455332 35677777777776666553 466777777777765 345555 3 6777777777777
Q ss_pred CCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 548 GSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 548 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
+|.++.+|.. +..+++|++|++++|.+..+|+..+..+++|++|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 7777776664 467777888888777777777766677777888887777644
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=8.8e-11 Score=134.10 Aligned_cols=123 Identities=24% Similarity=0.283 Sum_probs=90.9
Q ss_pred CCcEEEecCCCCccccccccCcccccEEecccccccccCC-CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCc
Q 048180 494 NLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRT 572 (824)
Q Consensus 494 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 572 (824)
.|++|+|++|.++.+|. ++.+.+|++|+|++| .++.+| .++++++|++|+|++|.++.+| .+++|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 47888888888877776 888888888888875 455777 4888888888888888888887 7888888888888888
Q ss_pred cccccc-hhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEE
Q 048180 573 RVRNFP-LHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFD 627 (824)
Q Consensus 573 ~~~~~~-~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 627 (824)
.+..++ +..++++++|+.|++++|.+...+... ..-+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~--------~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ--------ERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT--------THHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH--------HHHHHHCcccCccC
Confidence 887774 445788888888888888766654322 12234467777665
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.6e-12 Score=127.66 Aligned_cols=153 Identities=24% Similarity=0.259 Sum_probs=112.4
Q ss_pred ccEEEcCCCC-CcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCCC-cccCCCccEEecc
Q 048180 470 LTTLFLQGNP-LDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLPS-LAELVELMVLDVS 547 (824)
Q Consensus 470 L~~L~l~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp~-i~~L~~L~~L~l~ 547 (824)
++...+.++. .+..+|. .+..+++|++|++++|.+..+| .+..+.+|++|++++| .++.+|. ++.+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 4444444431 1334444 4688999999999999988888 8899999999999986 4667886 7778999999999
Q ss_pred CCCCcccCcccccCCCCcEEeccCccccccch-hhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEE
Q 048180 548 GSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPL-HLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVF 626 (824)
Q Consensus 548 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~-~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L 626 (824)
+|.++.+| .+.++++|++|++++|.+..++. ..+..+++|++|++++|.+...+.... .........+..+++|+.|
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-ATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-THHHHHHHHHHHCSSCSEE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc-chHHHHHHHHHhCCCcEEE
Confidence 99999887 68889999999999999887764 458899999999999987544311100 0011113346778888887
Q ss_pred E
Q 048180 627 D 627 (824)
Q Consensus 627 ~ 627 (824)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=6.1e-11 Score=139.82 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=96.6
Q ss_pred ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCC-CcccCCCcc
Q 048180 464 CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLAELVELM 542 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~~L~~L~ 542 (824)
+..+++|+.|++++|. +..+|..++ .+++|++|+|++|.+..+|..++.|.+|++|+|++|. ++.+| .+++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCC-CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence 6778889999999886 457887764 7899999999999988999889999999999999865 55788 499999999
Q ss_pred EEeccCCCCcccCcccccCCCCcEEeccCccccccchhhh
Q 048180 543 VLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLV 582 (824)
Q Consensus 543 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l 582 (824)
+|+|++|.++.+|..+++|++|++|++++|.+...++..+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999999999889999999999999998876555444
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=5e-10 Score=107.58 Aligned_cols=127 Identities=25% Similarity=0.341 Sum_probs=106.9
Q ss_pred ccEEEeccCCCcCCCCccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccccc-ccCcccccEEecccc
Q 048180 448 VERVSLMGNNLRELRTCPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKS-LSSLKYLTVLLLQNC 526 (824)
Q Consensus 448 ~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~c 526 (824)
.+.+++.++.+..+|. .-.++|++|++++|. +..++...+..+++|++|++++|.+..+|.. +..+.+|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3577888888888775 234789999999997 5677777788999999999999999888875 689999999999996
Q ss_pred cccccCC-C-cccCCCccEEeccCCCCcccCccc-ccCCCCcEEeccCcccccc
Q 048180 527 IYLTCLP-S-LAELVELMVLDVSGSGIAEFPDGM-NHLTKLLFLNLSRTRVRNF 577 (824)
Q Consensus 527 ~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~ 577 (824)
.++.+| . ++++++|++|++++|.++.+|..+ ..+++|++|++++|.+...
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 -KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 456666 4 799999999999999999998864 7899999999999987544
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.10 E-value=3.3e-09 Score=115.82 Aligned_cols=292 Identities=12% Similarity=0.027 Sum_probs=166.6
Q ss_pred chhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhc--cccceEEEEEeCCcCCHHHHH
Q 048180 73 ELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYR--SHFNTFIWVEASYEDDLKELQ 150 (824)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~~F~~~~wv~~s~~~~~~~~~ 150 (824)
...+.+..++.+....... ......+.+.|+|++|+||||+|+.+++....... +.-...+|+......+...++
T Consensus 20 ~~~gr~~~~~~l~~~l~~~---~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPA---LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGG---TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 3445555555555544221 01234568899999999999999999987644210 001246788888888889999
Q ss_pred HHHHHhcccccCCCcchhhhHHHHHHHHHHHH--cCCeEEEEEeCCCccccc----chh----cCCCC---CCCcEEEEE
Q 048180 151 IKIARKIDFVLSSDESVRDNAILLENALQTLL--ETGKILLILDNMRKAFSL----EEI----GIPTL---SNSLRIIIT 217 (824)
Q Consensus 151 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~----~~l----~~~~~---~~gs~IivT 217 (824)
..++.+++........ ....+.+.+.+.+ .+++.+|||||++..... +.+ ..... ..+..+|.|
T Consensus 97 ~~l~~~l~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGL---SVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHSCCCCSSCC---CHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHhCCCCCCCCC---CHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999988653322111 1223334444444 356899999999865321 222 11111 334477777
Q ss_pred cCChhh--------hhccccccccccCCCChHHHHHHHHHHhcC--cCCCCchhHHHHHHHHHHHhC---CChHHH-HHH
Q 048180 218 SPSSSL--------CRQMKCRERFALNLLTDEEAYLLLINEVGL--AGKVLEGEIEFGLKNIAKKCG---GLPLAI-ITF 283 (824)
Q Consensus 218 Tr~~~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPlai-~~~ 283 (824)
|+.... .+.+. ...+.+++++.++..+++...+.. .....++ +..+.++++++ |.|..+ ..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 776532 12211 147899999999999999887532 1111222 34567778887 999433 333
Q ss_pred HHHH--hhh---cCCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhh-ccCCCcccc
Q 048180 284 AKHH--LKF---IGFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCA-MYPRNHAFV 357 (824)
Q Consensus 284 g~~l--~~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s-~fp~~~~i~ 357 (824)
.... +.. ..-+.+.+..+++... ...+.-++..|+.+ .+..++.++ ++..+..+.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~------~~~~l~a~~~~~~~~~~~~ 310 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLH------AKLVLLSIMMLEDGGRPAS 310 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHH------HHHHHHHHHHHSSSSCCEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHH------HHHHHHHHHHHhcCCCCCc
Confidence 3222 111 1235566666655432 12234466788887 666665555 443223455
Q ss_pred hHHHHHHHHH----hccccccccchHHHHhhHHHHHHHHHhcCccccc
Q 048180 358 AEELMKDWMT----EGLLGEEMEGIDERFGKAKEILEELKDASFLVGI 401 (824)
Q Consensus 358 ~~~li~~Wia----eg~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 401 (824)
...+.+.... .| +.+ . ....+..++++|...+++ +.
T Consensus 311 ~~~~~~~~~~~~~~~~-~~~--~----~~~~~~~~l~~L~~~gli-~~ 350 (387)
T 2v1u_A 311 TGEIYERYKELTSTLG-LEH--V----TLRRVSGIISELDMLGIV-KS 350 (387)
T ss_dssp HHHHHHHHHHHHHHTT-CCC--C----CHHHHHHHHHHHHHTTSE-EE
T ss_pred HHHHHHHHHHHHHhcC-CCC--C----CHHHHHHHHHHHHhCCCe-EE
Confidence 5544443322 22 112 1 124567889999999999 66
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.10 E-value=6.9e-09 Score=113.12 Aligned_cols=268 Identities=12% Similarity=0.022 Sum_probs=154.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhc--cc--cceEEEEEeCCcC-CHHHHHHHHHHhcccccCCCcchhhhHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYR--SH--FNTFIWVEASYED-DLKELQIKIARKIDFVLSSDESVRDNAI 172 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 172 (824)
...+.+.|+|++|+||||+|+.+++....... .. ....+|+..+... +...++..++.++....... ......
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~ 120 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK--HGINLG 120 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS--SSSCTH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC--CCCCHH
Confidence 34568999999999999999999998644210 00 2356788877766 88888899888873211111 111112
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCcccc---cch-hc--CCCCCCCcEEEEEcCChhhhhcc------ccccccccCCCCh
Q 048180 173 LLENALQTLLETGKILLILDNMRKAFS---LEE-IG--IPTLSNSLRIIITSPSSSLCRQM------KCRERFALNLLTD 240 (824)
Q Consensus 173 ~l~~~l~~~l~~kr~LlVlDdv~~~~~---~~~-l~--~~~~~~gs~IivTTr~~~v~~~~------~~~~~~~l~~L~~ 240 (824)
.+.+.+.+.++.++.+|||||++.... .+. +. .... .+..||+||+.......+ .....+.+++++.
T Consensus 121 ~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 121 EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 344455556667666999999986532 222 21 1111 566888888875321111 1123789999999
Q ss_pred HHHHHHHHHHhc---CcCCCCchhHHHHHHHHHHHhC---CChH-HHHHHHHHH--hh-hcCCChHHHHHHHHHHHhhcc
Q 048180 241 EEAYLLLINEVG---LAGKVLEGEIEFGLKNIAKKCG---GLPL-AIITFAKHH--LK-FIGFDFISWKRALMSELDAFS 310 (824)
Q Consensus 241 ~~~~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~---GlPl-ai~~~g~~l--~~-~~~~~~~~w~~~~~~~~~~~~ 310 (824)
++..+++...+. .... .++ +..+.|++.++ |.|. |+..+-... +. ...-+.+++..+++...
T Consensus 200 ~~~~~il~~~~~~~~~~~~-~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~---- 271 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGT-YDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE---- 271 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTS-CCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhcccCC-cCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----
Confidence 999999998753 2111 222 34566777777 8876 444433332 21 01245667776665432
Q ss_pred CchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCCCcccchHHHHHHHHHhcc-ccccccchHHHHhhHHHHH
Q 048180 311 SLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEELMKDWMTEGL-LGEEMEGIDERFGKAKEIL 389 (824)
Q Consensus 311 ~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~Wiaeg~-i~~~~~~~~~~~~~~~~~~ 389 (824)
...+.-++..|+.+ .+..+..++....+-.+. +. ..-+++.+ +.+ . ......+++
T Consensus 272 ---------~~~~~~~~~~l~~~------~~~~l~al~~~~~~~~~~-~~--~~~~~~~~g~~~--~----~~~~~~~~l 327 (384)
T 2qby_B 272 ---------QERLIEAVKALPFH------YKLALRSLIESEDVMSAH-KM--YTDLCNKFKQKP--L----SYRRFSDII 327 (384)
T ss_dssp ---------HHHHHHHHHSSCHH------HHHHHHHHHTCCBHHHHH-HH--HHHHHHHTTCCC--C----CHHHHHHHH
T ss_pred ---------cchHHHHHHcCCHH------HHHHHHHHHHhcccChHH-HH--HHHHHHHcCCCC--C----CHHHHHHHH
Confidence 12344566778876 666665555511101111 01 11222211 111 1 123467889
Q ss_pred HHHHhcCccccc
Q 048180 390 EELKDASFLVGI 401 (824)
Q Consensus 390 ~~L~~~sll~~~ 401 (824)
+.|..++++ +.
T Consensus 328 ~~L~~~gli-~~ 338 (384)
T 2qby_B 328 SELDMFGIV-KI 338 (384)
T ss_dssp HHHHHTTSE-EE
T ss_pred HHHHhCCCE-EE
Confidence 999999999 65
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=2.8e-09 Score=116.31 Aligned_cols=296 Identities=13% Similarity=0.076 Sum_probs=161.4
Q ss_pred cchhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHH
Q 048180 72 GELTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 151 (824)
....+.++.++.+........ .......+.|+|++|+||||||+.+++.....+.. -...+|+......+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~---~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY---REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG---GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH---cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCCCCCHHHHHH
Confidence 345566666666655442210 12345689999999999999999999987543100 12467887777777888888
Q ss_pred HHHHhcccccCCCcchhhhHHHHHHHHHHHHc--CCeEEEEEeCCCcccc------cchhc-CC--CCCCCcEEEEEcCC
Q 048180 152 KIARKIDFVLSSDESVRDNAILLENALQTLLE--TGKILLILDNMRKAFS------LEEIG-IP--TLSNSLRIIITSPS 220 (824)
Q Consensus 152 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~------~~~l~-~~--~~~~gs~IivTTr~ 220 (824)
.++.+++....... .....+.+.+.+.+. +++.+||||+++.... +..+. .. ....+..+|+||+.
T Consensus 96 ~i~~~l~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 96 DLLESLDVKVPFTG---LSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHTTTTSCCCCSSS---CCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHhCCCCCCCC---CCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88888764322111 112233333433443 4589999999976431 22221 11 12234467778876
Q ss_pred hhhhhccc-------cccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhC---CChHHHHHHHH-H--H
Q 048180 221 SSLCRQMK-------CRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCG---GLPLAIITFAK-H--H 287 (824)
Q Consensus 221 ~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPlai~~~g~-~--l 287 (824)
......+. ....+.+++++.++..+++...+..... ...--.++.+.+++.++ |.|..+..+.. . +
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 54332221 1147899999999999999886532110 11112344566777776 99884433332 2 1
Q ss_pred hhh-c--CCChHHHHHHHHHHHhhccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCC-C-cccchHHHH
Q 048180 288 LKF-I--GFDFISWKRALMSELDAFSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPR-N-HAFVAEELM 362 (824)
Q Consensus 288 ~~~-~--~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~-~-~~i~~~~li 362 (824)
+.. + .-+.+.++.+++... ...+.-++..+|.+ .+..+..++...+ + ..+...++.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~------~~~il~ai~~~~~~g~~~~~~~~l~ 312 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFH------SKLVLMAVVSISSEENVVSTTGAVY 312 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHH------HHHHHHHHHHHC-----CEEHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCHH------HHHHHHHHHHHHhcCCCceeHHHHH
Confidence 110 1 234555555544322 12344456677776 6666655553211 1 223343333
Q ss_pred HHH--HHhcc-ccccccchHHHHhhHHHHHHHHHhcCccccc
Q 048180 363 KDW--MTEGL-LGEEMEGIDERFGKAKEILEELKDASFLVGI 401 (824)
Q Consensus 363 ~~W--iaeg~-i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 401 (824)
+.+ +++.+ +.+ - .......+++.|...+++ +.
T Consensus 313 ~~~~~~~~~~g~~~--~----~~~~~~~~l~~L~~~gli-~~ 347 (386)
T 2qby_A 313 ETYLNICKKLGVEA--V----TQRRVSDIINELDMVGIL-TA 347 (386)
T ss_dssp HHHHHHHHHHTCCC--C----CHHHHHHHHHHHHHHTSE-EE
T ss_pred HHHHHHHHhcCCCC--C----CHHHHHHHHHHHHhCCCE-EE
Confidence 222 12111 111 0 113456789999999999 65
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=2.1e-10 Score=122.36 Aligned_cols=287 Identities=13% Similarity=0.087 Sum_probs=171.4
Q ss_pred CCCccEEEcCCCCCcccCChhhhcC-CCCCcEEEecCCCCccccccccCcccccEEecccccccccCC--Cccc------
Q 048180 467 FCKLTTLFLQGNPLDLQLDNDFFNS-FPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP--SLAE------ 537 (824)
Q Consensus 467 ~~~L~~L~l~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp--~i~~------ 537 (824)
+.+++.|.+.|+- ....-..+.. +++|++|||++|.+......-+.+..++++.+..+ .+| .+.+
T Consensus 24 ~~~l~~L~l~g~i--~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL--NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE--CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEE
T ss_pred hCceeEEEEeccc--cHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccc
Confidence 4567777777641 1111112333 78899999999987622222233344555555543 455 2777
Q ss_pred --CCCccEEeccCCCCcccCcc-cccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhch
Q 048180 538 --LVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFI 614 (824)
Q Consensus 538 --L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 614 (824)
+.+|+.|++.. +++.++.. +..+++|+.|++..+.+..+++..|....++..+.............. ..
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i-------~~ 169 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW-------EH 169 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT-------TT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc-------cc
Confidence 89999999988 88887764 778899999999988888888877877666666654331100000000 00
Q ss_pred HhhhcCCCcc-EEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeeccc
Q 048180 615 EDVRKLRNLN-VFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHC 693 (824)
Q Consensus 615 ~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 693 (824)
..+..+..|+ .+.+. ....++..+... ...+.++..+.+.+.
T Consensus 170 ~~f~~~~~L~~~i~~~--~~~~l~~~~~~~-----------------------------------~~~~~~~~~l~~~~~ 212 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVG--AMGKLEDEIMKA-----------------------------------GLQPRDINFLTIEGK 212 (329)
T ss_dssp SCEEESCCCEEEEEEC--TTCCHHHHHHHT-----------------------------------TCCGGGCSEEEEEEC
T ss_pred cccccccccceeEEec--CCCcHHHHHhhc-----------------------------------ccCccccceEEEeee
Confidence 0122333343 22221 111122111100 012344555555443
Q ss_pred ccceee-cc-ccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccC-eEec
Q 048180 694 NAVTQM-TI-PNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLR-KLIL 770 (824)
Q Consensus 694 ~~~~~~-~l-~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~-~L~l 770 (824)
...... .+ ..+++|+.|+|.++ +++.++. ..+.++++|+.|.+.+. ++.|+. ..+..+++|+ .+.+
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~-------~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQ-------RVFSNCGRLAGTLEL 281 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCEEEEE
T ss_pred ecHHHHHHHHHhcCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehH-------HHhhCChhccEEEEE
Confidence 221111 11 23688889998863 5777754 45778899999999864 665552 2445678888 8988
Q ss_pred cCCcchhccc-cCcccCCCccEEEecCCCCcCCCCc-cccccccceeccC
Q 048180 771 SNLPELRFMY-SGEAQCDFVQTIGIWSCCKLERFPI-SLWVENYAQKLKS 818 (824)
Q Consensus 771 ~~~~~L~~~~-~~~~~lpsL~~L~i~~C~~L~~lp~-~~~~l~~L~~L~~ 818 (824)
.+ +++.++ ..+..|++|+.|.+.+ .+++.++. .+.++++|+.++.
T Consensus 282 ~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred cc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 87 677775 4578899999999976 57888887 4778899988864
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=3.3e-12 Score=125.42 Aligned_cols=142 Identities=23% Similarity=0.271 Sum_probs=117.9
Q ss_pred CccEEEeccC--CCcCCCC-ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccccccCcccccEEec
Q 048180 447 DVERVSLMGN--NLRELRT-CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLL 523 (824)
Q Consensus 447 ~~~~L~l~~~--~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 523 (824)
+++...+.+. .++.++. +..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4455555543 4555554 7789999999999996 55577 468999999999999999999998888999999999
Q ss_pred ccccccccCCCcccCCCccEEeccCCCCcccCc--ccccCCCCcEEeccCccccccch----------hhhcCCCCCcEE
Q 048180 524 QNCIYLTCLPSLAELVELMVLDVSGSGIAEFPD--GMNHLTKLLFLNLSRTRVRNFPL----------HLVTSLHNLQEF 591 (824)
Q Consensus 524 ~~c~~~~~lp~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~----------~~l~~L~~L~~L 591 (824)
++| .++.+|.++++++|++|++++|.++.+|. .+..+++|++|++++|.+...++ ..+..+++|+.|
T Consensus 101 ~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 997 56778889999999999999999998775 78999999999999998855433 247889999999
Q ss_pred E
Q 048180 592 S 592 (824)
Q Consensus 592 ~ 592 (824)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=8e-10 Score=105.62 Aligned_cols=103 Identities=22% Similarity=0.386 Sum_probs=81.7
Q ss_pred CcEEEecCCCCccccccccCcccccEEecccccccccC-C-CcccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccC
Q 048180 495 LKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCL-P-SLAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSR 571 (824)
Q Consensus 495 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~l-p-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~ 571 (824)
-+.++++++.+..+|..+. .+|++|+|++|. ++.+ | .++++++|++|+|++|+++.+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3678888888888887664 788888888864 4444 4 388888888888888888888876 47888888888888
Q ss_pred ccccccchhhhcCCCCCcEEEeecCcccc
Q 048180 572 TRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 600 (824)
|.+..+|+..+.++++|++|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88888887778888888888888887554
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=4.6e-08 Score=106.73 Aligned_cols=271 Identities=13% Similarity=0.083 Sum_probs=154.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+.+.|+|++|+||||+|+.+++..... .. ...+|+..+...+...++..++.+++....... .....+.+.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~l~ 117 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELYKDK--TT-ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG---LSRDEFLALLV 117 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTS--CC-CEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC---CCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhh--cC-eeEEEEeCccCCCHHHHHHHHHHHhCccCCCCC---CCHHHHHHHHH
Confidence 3589999999999999999999886431 11 246777777778888999999988865322111 11223333333
Q ss_pred HHHc--CCeEEEEEeCCCccc--ccchhc-CCC--CC---CCcEEEEEcCChhhhhccc-------cccccccCCCChHH
Q 048180 180 TLLE--TGKILLILDNMRKAF--SLEEIG-IPT--LS---NSLRIIITSPSSSLCRQMK-------CRERFALNLLTDEE 242 (824)
Q Consensus 180 ~~l~--~kr~LlVlDdv~~~~--~~~~l~-~~~--~~---~gs~IivTTr~~~v~~~~~-------~~~~~~l~~L~~~~ 242 (824)
+.+. +++.+||||+++... ....+. ... .. .+..||+||+.......+. ....+.+.+++.++
T Consensus 118 ~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~ 197 (389)
T 1fnn_A 118 EHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQ 197 (389)
T ss_dssp HHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHH
T ss_pred HHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHH
Confidence 3333 668999999998752 222221 111 11 3557888877654433221 11368999999999
Q ss_pred HHHHHHHHhcCcCCCCchhHHHHHHHHHHHh---------CCChHHHHHHHHHHh---hhcCCChHHHHHHHHHHHhhcc
Q 048180 243 AYLLLINEVGLAGKVLEGEIEFGLKNIAKKC---------GGLPLAIITFAKHHL---KFIGFDFISWKRALMSELDAFS 310 (824)
Q Consensus 243 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPlai~~~g~~l~---~~~~~~~~~w~~~~~~~~~~~~ 310 (824)
..+++...+..... ...--.+..+.|++.+ +|.|..+..+..... ...+...-.+..+...+....
T Consensus 198 ~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~- 275 (389)
T 1fnn_A 198 IFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL- 275 (389)
T ss_dssp HHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-
Confidence 99999887643110 0111234567788888 788755444433221 001111112222222111110
Q ss_pred CchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccC---CCcccchHHHHHHHHH----hccccccccchHHHHh
Q 048180 311 SLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYP---RNHAFVAEELMKDWMT----EGLLGEEMEGIDERFG 383 (824)
Q Consensus 311 ~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp---~~~~i~~~~li~~Wia----eg~i~~~~~~~~~~~~ 383 (824)
...+.-.+..|+.+ .+.++..++.+. .+..+....+...+-. .|.... ...
T Consensus 276 ---------~~~~~~~l~~l~~~------~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~ 333 (389)
T 1fnn_A 276 ---------FGISEEVLIGLPLH------EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR-------VHS 333 (389)
T ss_dssp ---------CCCCHHHHHHSCHH------HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC-------CHH
T ss_pred ---------hhhHHHHHHcCCHH------HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC-------CHH
Confidence 12223345677777 777777677554 2224556666554433 121111 113
Q ss_pred hHHHHHHHHHhcCccccc
Q 048180 384 KAKEILEELKDASFLVGI 401 (824)
Q Consensus 384 ~~~~~~~~L~~~sll~~~ 401 (824)
....++++|..++++ ..
T Consensus 334 ~~~~~l~~L~~~gli-~~ 350 (389)
T 1fnn_A 334 QLWSYLNDLREKGIV-ET 350 (389)
T ss_dssp HHHHHHHHHHHTTSS-EE
T ss_pred HHHHHHHHHHhCCCe-EE
Confidence 456889999999999 65
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=9.8e-10 Score=104.63 Aligned_cols=103 Identities=23% Similarity=0.410 Sum_probs=83.7
Q ss_pred CcEEEecCCCCccccccccCcccccEEecccccccccC-CC-cccCCCccEEeccCCCCcccCcc-cccCCCCcEEeccC
Q 048180 495 LKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCL-PS-LAELVELMVLDVSGSGIAEFPDG-MNHLTKLLFLNLSR 571 (824)
Q Consensus 495 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~l-p~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~ 571 (824)
.+.++++++.+..+|..+. .+|++|+|++|. ++.+ |. ++++++|++|+|++|+++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5778888888888887664 788888888864 5555 43 88889999999999988888876 47889999999999
Q ss_pred ccccccchhhhcCCCCCcEEEeecCcccc
Q 048180 572 TRVRNFPLHLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 600 (824)
|.+..+++..+.++++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 98888888778889999999999887544
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.91 E-value=1.8e-08 Score=101.95 Aligned_cols=177 Identities=12% Similarity=0.087 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-CcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-DESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l 178 (824)
.+++.|+|++|+||||+|+.+++..... ..+.. + ...... -...+.......... ..........+...+
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~--~~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE--TGITA--T----PCGVCD-NCREIEQGRFVDLIEIDAASRTKVEDTRDLL 115 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT--TCSCS--S----CCSCSH-HHHHHHTTCCSSEEEEETTCGGGHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC--CCCCC--C----CCcccH-HHHHHhccCCcceEEecCcccccHHHHHHHH
Confidence 3588999999999999999999876542 11100 0 000000 001111100000000 000001112222222
Q ss_pred HHH----HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChhhh-hc-cccccccccCCCChHHHHHHHH
Q 048180 179 QTL----LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSSLC-RQ-MKCRERFALNLLTDEEAYLLLI 248 (824)
Q Consensus 179 ~~~----l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~ 248 (824)
... ..+++.+||+||++... .++.+. +.....+.++|+||+..... .. ......+++.+++.++..+++.
T Consensus 116 ~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 116 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp HSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHH
Confidence 211 12568999999997643 344331 11223456888888764321 11 1123578999999999999999
Q ss_pred HHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 048180 249 NEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHL 288 (824)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~ 288 (824)
..+...+...+ .+..+.|++.|+|.|..+..+...+.
T Consensus 196 ~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 196 HILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88754332122 24567899999999999887765543
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=6.8e-09 Score=99.11 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=76.5
Q ss_pred cEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEecccccccccCC-C-cccCCCccEEecc
Q 048180 471 TTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVS 547 (824)
Q Consensus 471 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~ 547 (824)
+.++++++. +..+|..+ .++|++|+|++|.+..+ |..+..+.+|++|+|++| .++.+| . ++++++|++|+|+
T Consensus 15 ~~l~~~~n~-l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCC-CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 566666664 45666543 36788888888888776 446788888888888885 566666 3 6788888888888
Q ss_pred CCCCcccCcc-cccCCCCcEEeccCccccccc
Q 048180 548 GSGIAEFPDG-MNHLTKLLFLNLSRTRVRNFP 578 (824)
Q Consensus 548 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~ 578 (824)
+|+++.+|.. +..+++|++|++++|.+...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 8888888875 778888888888888775544
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=8.2e-09 Score=109.88 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=40.3
Q ss_pred CCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEeccc
Q 048180 467 FCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQN 525 (824)
Q Consensus 467 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~ 525 (824)
+++|+.|.+..+ +..++...|.+|++|+.|+++++.+..+++ .+..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~~--i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSEK--IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCTT--CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCcc--ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 788888888772 667777778888888888888887766654 456666666665543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1.2e-08 Score=97.05 Aligned_cols=103 Identities=25% Similarity=0.309 Sum_probs=75.3
Q ss_pred ccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccc-cccccCcccccEEecccccccccCC-C-cccCCCccEEec
Q 048180 470 LTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGIL-PKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDV 546 (824)
Q Consensus 470 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l 546 (824)
.++++++++. +..+|..+ .+.|++|+|++|.+..+ |..+..+.+|++|+|++| .++.+| . +.++++|++|+|
T Consensus 11 ~~~l~~s~n~-l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCC-cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 4566666664 45566543 36788888888888777 446788888888888876 455666 3 678888888888
Q ss_pred cCCCCcccCcc-cccCCCCcEEeccCcccccc
Q 048180 547 SGSGIAEFPDG-MNHLTKLLFLNLSRTRVRNF 577 (824)
Q Consensus 547 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~ 577 (824)
++|+++.+|.. +.++++|++|++++|.+...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888888774 77888888888888876443
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=1.6e-07 Score=102.25 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC--CcccCCCcc
Q 048180 466 MFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVELM 542 (824)
Q Consensus 466 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~L~ 542 (824)
.+..++.+.+..+ ...++...|.++ +|+.+.+..+ +..++. .+.+ .+|+.+.+.+ .++.++ .+.++.+|+
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCC
Confidence 3466777777664 666777777775 6888888765 666655 3444 3688888875 566676 388888899
Q ss_pred EEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecC
Q 048180 543 VLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGC 596 (824)
Q Consensus 543 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~ 596 (824)
.+++..++++.+|...-...+|+.+.+..+ +..++...|.++++|+.+.+..+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 999988888888887655788888888744 67777777888888888887653
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.77 E-value=1e-07 Score=94.93 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=94.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccc-eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFN-TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
+.+.|+|++|+||||+|+.+++..... .+. ..+.+..+.......+...+....... .
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------- 97 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE---NWRDNFIEMNASDERGIDVVRHKIKEFARTA-P----------------- 97 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG---GGGGGEEEEETTCTTCHHHHHHHHHHHHTSC-C-----------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc---ccccceEEeccccccChHHHHHHHHHHhccc-C-----------------
Confidence 348999999999999999999876432 121 233344433333222222111111000 0
Q ss_pred HHHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChhhh-hc-cccccccccCCCChHHHHHHHHHHhcC
Q 048180 180 TLLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSSLC-RQ-MKCRERFALNLLTDEEAYLLLINEVGL 253 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 253 (824)
.-.+++.+||+||++... .++.+. +.....+.++|+||+..... .. ......+++.+++.++..+++.+.+..
T Consensus 98 -~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 98 -IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp -STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH
Confidence 002578999999998753 223221 11123456888888764321 11 111237889999999999999887754
Q ss_pred cCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 048180 254 AGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHL 288 (824)
Q Consensus 254 ~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~ 288 (824)
.+...+ .+..+.+++.++|.|..+..+...+.
T Consensus 177 ~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 177 EGVKIT---EDGLEALIYISGGDFRKAINALQGAA 208 (226)
T ss_dssp HTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 332122 24566788999999987655544433
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=5e-07 Score=98.33 Aligned_cols=257 Identities=7% Similarity=0.035 Sum_probs=146.6
Q ss_pred CCccEEEeccCCCcCCCC--ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEe
Q 048180 446 GDVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLL 522 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~ 522 (824)
..+..+.+.+ .+..++. +.++ +|+.+.+..+ +..++...|.++ .|+.+.+.+ .+..++. .+..|.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3455555543 2344433 4454 6778877665 566666666664 577787775 5555553 567778888888
Q ss_pred cccccccccCC-C-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 523 LQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 523 L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
+.++ .++.+| . +. ..+|+.+.+.. +++.++. .+.++++|+.+.+..+ +..++...|.+ .+|+.+.+..+ +.
T Consensus 187 l~~n-~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 187 LSKT-KITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp CTTS-CCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred cCCC-cceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-cc
Confidence 8763 566666 2 44 57788888764 3666654 4667778888887654 46666666666 67888877442 22
Q ss_pred cccccccchhhhhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCc
Q 048180 600 CLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPI 679 (824)
Q Consensus 600 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 679 (824)
.+. ...+..+++|+.+.+..+.....+ + ..++...+
T Consensus 261 ~I~-----------~~aF~~c~~L~~l~l~~~~~~~~~----------~-----------------------~~I~~~aF 296 (401)
T 4fdw_A 261 NIA-----------SRAFYYCPELAEVTTYGSTFNDDP----------E-----------------------AMIHPYCL 296 (401)
T ss_dssp EEC-----------TTTTTTCTTCCEEEEESSCCCCCT----------T-----------------------CEECTTTT
T ss_pred EEC-----------hhHhhCCCCCCEEEeCCccccCCc----------c-----------------------cEECHHHh
Confidence 221 224667777887777655432000 0 00111222
Q ss_pred cCCcCcceeeecccccceee---ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCC
Q 048180 680 WLPWNTSELLLVHCNAVTQM---TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENS 756 (824)
Q Consensus 680 ~~~~~L~~L~l~~~~~~~~~---~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 756 (824)
..+++|+.+.+.+ .++.+ .+.++++|+.|.|.. +++.+.. ..+.++ +|+.+.+.++ .+..+..
T Consensus 297 ~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~-~aF~~~-~L~~l~l~~n-~~~~l~~------- 362 (401)
T 4fdw_A 297 EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINF-SAFNNT-GIKEVKVEGT-TPPQVFE------- 362 (401)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECT-TSSSSS-CCCEEEECCS-SCCBCCC-------
T ss_pred hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcH-HhCCCC-CCCEEEEcCC-CCccccc-------
Confidence 3345566665542 22322 455677778777743 4555532 345566 7888888765 2222221
Q ss_pred CCccccc-ccCeEeccC
Q 048180 757 NPQVCWR-SLRKLILSN 772 (824)
Q Consensus 757 ~~~~~~p-~L~~L~l~~ 772 (824)
..+.++| +++.|++-.
T Consensus 363 ~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SSCCCSCTTCCEEEECG
T ss_pred ccccCCCCCccEEEeCH
Confidence 1222343 567777754
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=3.8e-08 Score=105.61 Aligned_cols=98 Identities=28% Similarity=0.309 Sum_probs=51.1
Q ss_pred EecCC-CCccccccccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccc
Q 048180 499 NLSDT-SMGILPKSLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRV 574 (824)
Q Consensus 499 ~L~~~-~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 574 (824)
+++++ .+..+|. +..+.+|++|+|++++.++.+| . +++|.+|++|+|++|+++.+|. .+.+|++|++|++++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4555555 5555555555555422344444 2 5555555555555555554443 345555555555555555
Q ss_pred cccchhhhcCCCCCcEEEeecCcc
Q 048180 575 RNFPLHLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 575 ~~~~~~~l~~L~~L~~L~l~~~~l 598 (824)
..+|+..+..++ |+.|++.+|.+
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCc
Confidence 555554444444 55555555543
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.66 E-value=2.6e-07 Score=97.95 Aligned_cols=251 Identities=15% Similarity=0.043 Sum_probs=125.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
...|.|+|++|+||||+|+.+++.... ..+++..+......++.. .+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~~~~~~~~~l~~-------------------------~l~ 85 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSGPAIEKPGDLAA-------------------------ILA 85 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECTTTCCSHHHHHH-------------------------HHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeccccCChHHHHH-------------------------HHH
Confidence 456889999999999999999987532 123444333222222211 111
Q ss_pred HHHcCCeEEEEEeCCCcccc--cchh-------c--CCC-----------CCCCcEEEEEcCChh-hhhcc--ccccccc
Q 048180 180 TLLETGKILLILDNMRKAFS--LEEI-------G--IPT-----------LSNSLRIIITSPSSS-LCRQM--KCRERFA 234 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~--~~~l-------~--~~~-----------~~~gs~IivTTr~~~-v~~~~--~~~~~~~ 234 (824)
..+ .+..+|+|||++.... ...+ . ... ...+.++|.||.... +...+ .....+.
T Consensus 86 ~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~ 164 (324)
T 1hqc_A 86 NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEH 164 (324)
T ss_dssp TTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEE
T ss_pred Hhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEe
Confidence 000 3455777888765431 1111 0 000 002345666665432 21111 1124788
Q ss_pred cCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhc------CCChHHHHHHHHHHHhh
Q 048180 235 LNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFI------GFDFISWKRALMSELDA 308 (824)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~------~~~~~~w~~~~~~~~~~ 308 (824)
+.+++.++...++...+...+...+ .+..+.+++.++|.|..+..+...+.... .-+.+....++..+...
T Consensus 165 l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 165 LEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 9999999999998887754332122 34567889999999988877665543111 12334444444332211
Q ss_pred ccCchhhHHHHHhhhhhhhhcccccccCCcchhhhhhhhhccCCCcccchHHH----HHHHHHhccccccccchHHHHhh
Q 048180 309 FSSLKYIEEEVFRDLKLGYEQLNKYSSYGCNTRECLLYCAMYPRNHAFVAEEL----MKDWMTEGLLGEEMEGIDERFGK 384 (824)
Q Consensus 309 ~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~l----i~~Wiaeg~i~~~~~~~~~~~~~ 384 (824)
...+...+..+...+.-.|..=+.. ....--.++ +++..+ -++-+..|++.. ...+....+.
T Consensus 242 ~~~l~~~e~~~i~~~~~~~~g~~~~------~~~~a~~lg-------i~~~tl~~~l~~~~i~~~li~~-~~~g~~~~~~ 307 (324)
T 1hqc_A 242 ELGLEKRDREILEVLILRFGGGPVG------LATLATALS-------EDPGTLEEVHEPYLIRQGLLKR-TPRGRVPTEL 307 (324)
T ss_dssp TTCCCHHHHHHHHHHHHHSCSSCCC------HHHHHHHTT-------SCHHHHHHHTHHHHHHTTSEEE-ETTEEEECHH
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCch------HHHHHHHhC-------CCHHHHHHHHhHHHHHhcchhc-CCccceecHH
Confidence 1112222222222222222211111 222222222 233332 234566788876 3444556678
Q ss_pred HHHHHH-HHHhcCccccc
Q 048180 385 AKEILE-ELKDASFLVGI 401 (824)
Q Consensus 385 ~~~~~~-~L~~~sll~~~ 401 (824)
|.+||+ ++.+|+++ |+
T Consensus 308 ~~~~~~~~~~~~~~~-~~ 324 (324)
T 1hqc_A 308 AYRHLGYPPPVGPLL-EP 324 (324)
T ss_dssp HHHHTTCCCCC-------
T ss_pred HHHHHhcCCCCCCCC-CC
Confidence 999998 89999998 74
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=9.1e-09 Score=111.00 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=40.7
Q ss_pred CCccEEeccCCCCcc-----cCcccccCCCCcEEeccCccccccc----hhhhcCCCCCcEEEeecCccccccccccchh
Q 048180 539 VELMVLDVSGSGIAE-----FPDGMNHLTKLLFLNLSRTRVRNFP----LHLVTSLHNLQEFSMIGCDLLCLPRSLMQED 609 (824)
Q Consensus 539 ~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~~----~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~ 609 (824)
++|++|+|++|.++. ++..+..+++|++|++++|.+.+.. ...+...++|++|++++|.+... +
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~-------g 227 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT-------A 227 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH-------H
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH-------H
Confidence 445555555555432 3333444555555555555542211 12234445555555555543221 1
Q ss_pred hhhchHhhhcCCCccEEEEEecCcc
Q 048180 610 YAAFIEDVRKLRNLNVFDFTFVSLQ 634 (824)
Q Consensus 610 ~~~~~~~l~~L~~L~~L~l~~~~~~ 634 (824)
...+...+...++|+.|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1122333444555555555555544
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=1.7e-06 Score=94.26 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=67.5
Q ss_pred ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhcc
Q 048180 700 TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRFM 779 (824)
Q Consensus 700 ~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~ 779 (824)
.+..+.+|+.+.+.+ +++.+.. ..+.++.+|+.+.|.+ .++.|.. .++..+.+|+.+.|.. +++.+
T Consensus 292 ~F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~-------~aF~~c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIGK-------RSFRGCTSLSNINFPL--SLRKI 357 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECT-------TTTTTCTTCCEECCCT--TCCEE
T ss_pred ccccccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEhH-------HhccCCCCCCEEEECc--cccEe
Confidence 345677888888854 4555533 3466788888888853 3554442 1344567888888864 36666
Q ss_pred cc-CcccCCCccEEEecCCCCcCCCCccccccccceec
Q 048180 780 YS-GEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKL 816 (824)
Q Consensus 780 ~~-~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L 816 (824)
.. .+..|++|+.+.+.. .++.+...+.++++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 44 467788999998864 466666677788888765
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=1.7e-08 Score=108.80 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=111.9
Q ss_pred CCccEEEeccCCCcCCCC------c-cCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCcccc-----ccc-
Q 048180 446 GDVERVSLMGNNLRELRT------C-PMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILP-----KSL- 512 (824)
Q Consensus 446 ~~~~~L~l~~~~~~~~~~------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-----~~i- 512 (824)
..++.+++.+|.+..... + ...++|+.|++++|.........+...+++|+.|+|++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 468899999988764321 2 234799999999997533333334455678999999999985432 222
Q ss_pred cCcccccEEeccccccccc-----CC-CcccCCCccEEeccCCCCcc-----cCcccccCCCCcEEeccCccccccc---
Q 048180 513 SSLKYLTVLLLQNCIYLTC-----LP-SLAELVELMVLDVSGSGIAE-----FPDGMNHLTKLLFLNLSRTRVRNFP--- 578 (824)
Q Consensus 513 ~~l~~L~~L~L~~c~~~~~-----lp-~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~~--- 578 (824)
....+|++|+|++|. ++. ++ .+..+++|++|+|++|.+.. ++..+...++|++|++++|.+....
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999985 433 33 25788999999999999873 4566788899999999999985432
Q ss_pred -hhhhcCCCCCcEEEeecCcccc
Q 048180 579 -LHLVTSLHNLQEFSMIGCDLLC 600 (824)
Q Consensus 579 -~~~l~~L~~L~~L~l~~~~l~~ 600 (824)
...+...++|++|++++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 1235677999999999997543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.7e-07 Score=98.86 Aligned_cols=91 Identities=19% Similarity=0.087 Sum_probs=47.9
Q ss_pred cccCChhhhcCCCCCcEEEecC-CCCccccc-cccCcccccEEecccccccccCC-C-cccCCCccEEeccCCCCcccCc
Q 048180 481 DLQLDNDFFNSFPNLKILNLSD-TSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP-S-LAELVELMVLDVSGSGIAEFPD 556 (824)
Q Consensus 481 ~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp-~-i~~L~~L~~L~l~~~~l~~lp~ 556 (824)
+..+|. +..+++|+.|+|++ |.+..+|. .++.|.+|++|+|++|. ++.+| . +++|++|++|+|++|+++.+|.
T Consensus 21 l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 344554 45555555555554 55555553 45555566666665543 33333 2 5556666666666666655555
Q ss_pred ccccCCCCcEEeccCccc
Q 048180 557 GMNHLTKLLFLNLSRTRV 574 (824)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~ 574 (824)
.+....+|+.|++.+|.+
T Consensus 98 ~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TTTCSCCCCEEECCSSCC
T ss_pred HHcccCCceEEEeeCCCc
Confidence 433333366666655554
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=8.7e-07 Score=93.78 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=91.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+.+.|+|++|+||||+|+.+++..... ..-...+++..+...... .+++++..+.....
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~------------------ 101 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGR--SYADGVLELNASDDRGID-VVRNQIKHFAQKKL------------------ 101 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG--GHHHHEEEECTTSCCSHH-HHHTHHHHHHHBCC------------------
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCC--cccCCEEEecCccccChH-HHHHHHHHHHhccc------------------
Confidence 348899999999999999999986431 111123344333322221 11222221110000
Q ss_pred HH-cCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChhh-hhc-cccccccccCCCChHHHHHHHHHHhcC
Q 048180 181 LL-ETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSSL-CRQ-MKCRERFALNLLTDEEAYLLLINEVGL 253 (824)
Q Consensus 181 ~l-~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 253 (824)
.+ .+++.+||+||++... .++.+. +.....+.++|+||+...- ... ......+++.+++.++..+++...+..
T Consensus 102 ~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 102 HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHH
Confidence 01 2568999999998753 233331 1112345678877765322 111 112247899999999999999887653
Q ss_pred cCCCCchhHHHHHHHHHHHhCCChHH-HHHHHH
Q 048180 254 AGKVLEGEIEFGLKNIAKKCGGLPLA-IITFAK 285 (824)
Q Consensus 254 ~~~~~~~~~~~~~~~i~~~c~GlPla-i~~~g~ 285 (824)
.+...+ .+....|++.++|.|.. +..+..
T Consensus 182 ~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 182 EDVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 321122 24567899999999954 444433
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=6.3e-06 Score=89.78 Aligned_cols=304 Identities=12% Similarity=0.086 Sum_probs=168.3
Q ss_pred ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC--CcccCCC
Q 048180 464 CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVE 540 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~ 540 (824)
+.++.+|+++.+..+ +..++...|.+|.+|+.+++.++ +..++. .+..+.+|+.+.+.. .+..++ .+.++..
T Consensus 67 F~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTCCC
T ss_pred hhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecceeeecccc
Confidence 677888888888754 66777777888888888888654 444443 456677777766653 234443 2444433
Q ss_pred ccEEeccCCCCcccC-cccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchHhhhc
Q 048180 541 LMVLDVSGSGIAEFP-DGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRK 619 (824)
Q Consensus 541 L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~ 619 (824)
+...... .+..++ ..+.++++|+.+.+..+ ...++...+.++.+|+.+.+..+ +..+. ...+..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~-----------~~~F~~ 206 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIR-----------DYCFAE 206 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEEC-----------TTTTTT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeC-----------chhhcc
Confidence 3322221 122222 24566777777777644 34555566777777777766543 11111 112334
Q ss_pred CCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCCCccCCcCcceeeecccccc-ee
Q 048180 620 LRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPNDPIWLPWNTSELLLVHCNAV-TQ 698 (824)
Q Consensus 620 L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~-~~ 698 (824)
+..|+.+.+..+... ..... .....|+.+.+... ...++...+.....|+.+.+...... ..
T Consensus 207 ~~~L~~i~~~~~~~~-i~~~~--~~~~~l~~i~ip~~--------------~~~i~~~~f~~~~~l~~~~~~~~~~~i~~ 269 (394)
T 4fs7_A 207 CILLENMEFPNSLYY-LGDFA--LSKTGVKNIIIPDS--------------FTELGKSVFYGCTDLESISIQNNKLRIGG 269 (394)
T ss_dssp CTTCCBCCCCTTCCE-ECTTT--TTTCCCCEEEECTT--------------CCEECSSTTTTCSSCCEEEECCTTCEECS
T ss_pred ccccceeecCCCceE-eehhh--cccCCCceEEECCC--------------ceecccccccccccceeEEcCCCcceeec
Confidence 444444433221111 00000 11234444433110 11112222334456666666443211 11
Q ss_pred eccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCCcchhc
Q 048180 699 MTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNLPELRF 778 (824)
Q Consensus 699 ~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 778 (824)
..+..+++|+.+..... .+ +...+..+.+|+.+.+.+ .++.|+. ..+..+++|+.+.|.+ +++.
T Consensus 270 ~~F~~~~~l~~~~~~~~----~i-~~~~F~~~~~L~~i~l~~--~i~~I~~-------~aF~~c~~L~~i~lp~--~v~~ 333 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSV----IV-PEKTFYGCSSLTEVKLLD--SVKFIGE-------EAFESCTSLVSIDLPY--LVEE 333 (394)
T ss_dssp CTTTTCTTCCEEEECSS----EE-CTTTTTTCTTCCEEEECT--TCCEECT-------TTTTTCTTCCEECCCT--TCCE
T ss_pred cccccccccceeccCce----ee-cccccccccccccccccc--ccceech-------hhhcCCCCCCEEEeCC--cccE
Confidence 14556677777766542 22 223456788898888864 3554442 2344678899999864 3666
Q ss_pred ccc-CcccCCCccEEEecCCCCcCCCCc-cccccccceeccCCCCc
Q 048180 779 MYS-GEAQCDFVQTIGIWSCCKLERFPI-SLWVENYAQKLKSPCSL 822 (824)
Q Consensus 779 ~~~-~~~~lpsL~~L~i~~C~~L~~lp~-~~~~l~~L~~L~~~~~~ 822 (824)
+.. .+..|++|+.+.+.. +++.++. .+.++++|+.++++...
T Consensus 334 I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 334 IGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp ECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGGG
T ss_pred EhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCCC
Confidence 744 467889999999864 4777776 47788899988876543
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.1e-05 Score=83.62 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhcc----ccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRS----HFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAIL 173 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 173 (824)
.....+-|+|++|.|||++|+.|++........ .| ..+.|......+...++..|++++...... .......
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~I~~~L~g~~~~---~~~~~~~ 118 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEKIWFAISKENLC---GDISLEA 118 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHHHHHHHSCCC-----CCCCHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHHHHHHhcCCCCC---chHHHHH
Confidence 456788999999999999999999988642111 12 356677777778889999999998543211 1222344
Q ss_pred HHHHHHHH--HcCCeEEEEEeCCCcccccchh----cCCCCCCC-cEEEEEcCChh-----h----hhccccccccccCC
Q 048180 174 LENALQTL--LETGKILLILDNMRKAFSLEEI----GIPTLSNS-LRIIITSPSSS-----L----CRQMKCRERFALNL 237 (824)
Q Consensus 174 l~~~l~~~--l~~kr~LlVlDdv~~~~~~~~l----~~~~~~~g-s~IivTTr~~~-----v----~~~~~~~~~~~l~~ 237 (824)
+.+.+... -+++++++|||+++...+-+.+ ..+....+ ..||.++...+ + .+.++ ...+.+.+
T Consensus 119 L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~p 197 (318)
T 3te6_A 119 LNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNK 197 (318)
T ss_dssp HHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCC
T ss_pred HHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCC
Confidence 44444432 2467899999999876422222 11111222 23333343321 1 11221 14688999
Q ss_pred CChHHHHHHHHHHhc
Q 048180 238 LTDEEAYLLLINEVG 252 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~ 252 (824)
.+.+|-.+++.+++.
T Consensus 198 Yt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 198 VDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888763
No 165
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=4.9e-06 Score=88.10 Aligned_cols=163 Identities=20% Similarity=0.208 Sum_probs=92.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+.+-++|++|+||||+|+.+++..... ..-...+.+..+...... .+++. +.+...
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~--------------------~~~~~~ 102 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARELFGE--NWRHNFLELNASDERGIN-VIREK--------------------VKEFAR 102 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHHGG--GHHHHEEEEETTCHHHHH-TTHHH--------------------HHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhcCC--cccCceEEeeccccCchH-HHHHH--------------------HHHHHh
Confidence 3458999999999999999999986431 100112333322211110 00111 111100
Q ss_pred H-HH-cCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChhh-hhcc-ccccccccCCCChHHHHHHHHHHh
Q 048180 180 T-LL-ETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSSL-CRQM-KCRERFALNLLTDEEAYLLLINEV 251 (824)
Q Consensus 180 ~-~l-~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (824)
. .+ .+++.+||+||++... .++.+. ......+.++|+||....- .... .....+++.+++.++...++...+
T Consensus 103 ~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 103 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp SCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHH
Confidence 0 01 1568899999998753 333331 1112345688888866432 1111 112368899999999999998877
Q ss_pred cCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 048180 252 GLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHL 288 (824)
Q Consensus 252 ~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~ 288 (824)
...+...+ .+..+.|++.++|.|..+..+.....
T Consensus 183 ~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 183 ENEGLELT---EEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp HTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 54432112 24567788999999987665554443
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=1.5e-06 Score=92.78 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=61.6
Q ss_pred CcCcceeeecccccceee----ccccCCCCCEEEEecCCC-------ccccccchhhhhccccceeccccccchhhhhcc
Q 048180 682 PWNTSELLLVHCNAVTQM----TIPNLQNLKFLEIFNCEG-------LKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQ 750 (824)
Q Consensus 682 ~~~L~~L~l~~~~~~~~~----~l~~l~~L~~L~L~~c~~-------l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~ 750 (824)
.++|++|.+..|...... ....+|+|+.|+|+.+.+ +..+.+.-....+|+|+.|.+.+|.........
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 467778877755422111 123678888888863211 212211111135788888888877533222110
Q ss_pred cCCCCCCCcccccccCeEeccCCcchhc-----cccCcccCCCccEEEecCC
Q 048180 751 DDDENSNPQVCWRSLRKLILSNLPELRF-----MYSGEAQCDFVQTIGIWSC 797 (824)
Q Consensus 751 ~~~~~~~~~~~~p~L~~L~l~~~~~L~~-----~~~~~~~lpsL~~L~i~~C 797 (824)
.. ....+|+|++|+|+.+ .+.. ++.++.++++|+.|++++|
T Consensus 272 la-----~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 272 FL-----ESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HH-----HCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HH-----hCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 00 1125788888888766 3443 3445567788888888876
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=1.6e-06 Score=92.51 Aligned_cols=139 Identities=15% Similarity=0.175 Sum_probs=76.7
Q ss_pred hhhcCCCCCcEEEecCCCCccccccccCcccccEEecccccccccCC-Ccc--cCCCccEEeccCC--------CCcccC
Q 048180 487 DFFNSFPNLKILNLSDTSMGILPKSLSSLKYLTVLLLQNCIYLTCLP-SLA--ELVELMVLDVSGS--------GIAEFP 555 (824)
Q Consensus 487 ~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~c~~~~~lp-~i~--~L~~L~~L~l~~~--------~l~~lp 555 (824)
.++..+++|+.|+|+++....+|. + .+.+|++|+|..|..-.... .+. ++++|++|+|+.+ .+..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345667777777777764233443 3 26777777777653211111 232 6777777777431 122222
Q ss_pred ccc--ccCCCCcEEeccCcccccc-chhh--hcCCCCCcEEEeecCccccccccccchhhhhchHhhhcCCCccEEEEEe
Q 048180 556 DGM--NHLTKLLFLNLSRTRVRNF-PLHL--VTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTF 630 (824)
Q Consensus 556 ~~i--~~L~~L~~L~l~~~~~~~~-~~~~--l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 630 (824)
..+ ..+++|++|++.+|.+... +... ...+++|++|+++.|.+... +...+...+..+++|+.|+++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~-------G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE-------GARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH-------HHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH-------HHHHHHhhcccCCcceEEECCC
Confidence 222 2467888888877766321 1111 13567788888877653321 1122344456677888888877
Q ss_pred cCcc
Q 048180 631 VSLQ 634 (824)
Q Consensus 631 ~~~~ 634 (824)
|.+.
T Consensus 317 n~i~ 320 (362)
T 2ra8_A 317 NYLS 320 (362)
T ss_dssp BBCC
T ss_pred CcCC
Confidence 7654
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=7.3e-06 Score=90.15 Aligned_cols=160 Identities=12% Similarity=0.081 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
...+.|+|++|+||||||+.+++.....+.+ ...+++.. ..+..++...+... .... +.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~--~~v~~v~~------~~~~~~~~~~~~~~---------~~~~----~~ 188 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD--LRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCS--SCEEEEEH------HHHHHHHHHHHHTT---------CHHH----HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCC--CeEEEeeH------HHHHHHHHHHHHcc---------cHHH----HH
Confidence 5678999999999999999999987543101 12344443 23344444433211 0111 22
Q ss_pred HHHcCCeEEEEEeCCCcccc---c-chhcC---CCCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHHH
Q 048180 180 TLLETGKILLILDNMRKAFS---L-EEIGI---PTLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEEA 243 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~---~-~~l~~---~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~ 243 (824)
..+..+.-+|++||++.... . +.+.. .....|..||+||.+. .+.+.+....++.+++++.++-
T Consensus 189 ~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r 268 (440)
T 2z4s_A 189 EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_dssp HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHH
T ss_pred HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHH
Confidence 22223678999999976532 1 12210 1124567888888762 2233333345789999999999
Q ss_pred HHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 244 YLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 244 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
..++.+.+...+...++ ++...|++.++|.+-.+..+
T Consensus 269 ~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 269 KSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 99998887533221222 34567888889988655443
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=7.9e-05 Score=81.04 Aligned_cols=317 Identities=10% Similarity=0.078 Sum_probs=160.5
Q ss_pred ccCCC-CccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCC---Cccccc-cccCcccccEEecccccccccCC--Ccc
Q 048180 464 CPMFC-KLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTS---MGILPK-SLSSLKYLTVLLLQNCIYLTCLP--SLA 536 (824)
Q Consensus 464 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp--~i~ 536 (824)
+.++. .|+++.+..+ +..+....|.+|.+|+.+.+.++. ++.++. .+..+.+|+.+.+.. .++.++ .+.
T Consensus 59 F~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~ 134 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFH 134 (394)
T ss_dssp TTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTT
T ss_pred ccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhh
Confidence 55564 5888888765 667777778889999999887653 555544 566777888777754 366666 277
Q ss_pred cCCCccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccccccccccchhhhhchH
Q 048180 537 ELVELMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLLCLPRSLMQEDYAAFIE 615 (824)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 615 (824)
.+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+.. .+|+.+.+..+. ..+ ...
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i-----------~~~ 199 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRI-----------GTN 199 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEE-----------CTT
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-ccc-----------ccc
Confidence 8888888888643 444443 4567788888887654 34554444543 567777765432 110 012
Q ss_pred hhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccc-cchhhhccCCCCCccCCcCcceeeecccc
Q 048180 616 DVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRG-NTLAFMKEFPNDPIWLPWNTSELLLVHCN 694 (824)
Q Consensus 616 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 694 (824)
.+..+.+|..................... ............ ...... ........++...+....+|+.+.+....
T Consensus 200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYPAIDNVLYEKS-ANGDYALIRYPS--QREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp TTTTCTTCCEEEECCSSSCBSSSCEEEEC-TTSCEEEEECCT--TCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC
T ss_pred hhhhccccceecccccccccccceeeccc-cccccccccccc--ccccceEEcCCcceEcccceeeecccccEEeccccc
Confidence 23444555554443322221111100000 000000000000 000000 00111112222233344555655553221
Q ss_pred c-ceeeccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCcccccccCeEeccCC
Q 048180 695 A-VTQMTIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQVCWRSLRKLILSNL 773 (824)
Q Consensus 695 ~-~~~~~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~~ 773 (824)
. +....+.++++|+.+.+. ..+..++. ..+.++.+|+.+.|.. .++.|.. ..+..+.+|+.+.|-.
T Consensus 277 ~~I~~~aF~~c~~L~~i~l~--~~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~-------~aF~~C~~L~~i~ip~- 343 (394)
T 4gt6_A 277 VSIGTGAFMNCPALQDIEFS--SRITELPE-SVFAGCISLKSIDIPE--GITQILD-------DAFAGCEQLERIAIPS- 343 (394)
T ss_dssp CEECTTTTTTCTTCCEEECC--TTCCEECT-TTTTTCTTCCEEECCT--TCCEECT-------TTTTTCTTCCEEEECT-
T ss_pred ceecCcccccccccccccCC--CcccccCc-eeecCCCCcCEEEeCC--cccEehH-------hHhhCCCCCCEEEECc-
Confidence 1 111134556777777774 24555532 3456677777777753 2444432 1344567777777743
Q ss_pred cchhcccc-CcccCCCccEEEecCCCCcCCCCccccccccceeccCC
Q 048180 774 PELRFMYS-GEAQCDFVQTIGIWSCCKLERFPISLWVENYAQKLKSP 819 (824)
Q Consensus 774 ~~L~~~~~-~~~~lpsL~~L~i~~C~~L~~lp~~~~~l~~L~~L~~~ 819 (824)
+++.+.. .+..|++|+.+.+.+.. ... ..+..+++|+.+.+.
T Consensus 344 -sv~~I~~~aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 344 -SVTKIPESAFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp -TCCBCCGGGGTTCTTCCEEEESSCH--HHH-HTCBCCCCC------
T ss_pred -ccCEEhHhHhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeC
Confidence 3555543 35677788888776531 111 234455566665554
No 170
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.05 E-value=3.5e-05 Score=81.09 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccc-eEEEEEeCCcCCHHHHHHH
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFN-TFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~ 152 (824)
..+.++.++.+..... ....+.+-++|++|+||||+|+.+++..... .+. ..+.+..+......
T Consensus 19 ~~g~~~~~~~l~~~l~-------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~---~~~~~~~~~~~~~~~~~~----- 83 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVE-------RKNIPHLLFSGPPGTGKTATAIALARDLFGE---NWRDNFIEMNASDERGID----- 83 (319)
T ss_dssp SCSCHHHHHHHHTTTT-------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTT---CHHHHCEEEETTSTTCTT-----
T ss_pred HhCCHHHHHHHHHHHh-------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCC---cccCCeEEEeCccccChH-----
Confidence 3444555555554442 2233348899999999999999999886321 111 12223333211100
Q ss_pred HHHhcccccCCCcchhhhHHHHHHHHHH-HH-cCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChh-hhh
Q 048180 153 IARKIDFVLSSDESVRDNAILLENALQT-LL-ETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSS-LCR 225 (824)
Q Consensus 153 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~l-~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~-v~~ 225 (824)
... ..+...... .+ .+++-++|+|+++... ..+.+. +.....+.++|+||.... +..
T Consensus 84 -------------~~~---~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~ 147 (319)
T 2chq_A 84 -------------VVR---HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIE 147 (319)
T ss_dssp -------------TSS---HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCH
T ss_pred -------------HHH---HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcch
Confidence 000 011111000 01 2568899999997653 233332 112234557777776543 211
Q ss_pred c-cccccccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 048180 226 Q-MKCRERFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHH 287 (824)
Q Consensus 226 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l 287 (824)
. ......+++.+++.++..+++...+...+...+ .+....+++.++|.+..+...-..+
T Consensus 148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQGA 207 (319)
T ss_dssp HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 111247899999999999998887754432122 2345678889999987665544443
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.05 E-value=6.4e-06 Score=82.82 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=89.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+.+.|+|++|+||||+|+.+++..... ....+|+..+...+. +. . ..+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~----~~~~~~~~~~~~~~~----------~~----------~----~~~~~ 102 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL----ERRSFYIPLGIHASI----------ST----------A----LLEGL 102 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEEGGGGGGS----------CG----------G----GGTTG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHH----------HH----------H----HHHhc
Confidence 45678899999999999999999987542 234566665432110 00 0 00001
Q ss_pred HHHHcCCeEEEEEeCCCcccc----cchhcC---CCCCCCc-EEEEEcCChh---------hhhccccccccccCCCChH
Q 048180 179 QTLLETGKILLILDNMRKAFS----LEEIGI---PTLSNSL-RIIITSPSSS---------LCRQMKCRERFALNLLTDE 241 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~----~~~l~~---~~~~~gs-~IivTTr~~~---------v~~~~~~~~~~~l~~L~~~ 241 (824)
.+..+||+||++.... .+.+.. .....+. +||+||+... +.+.+.....+++.+++.+
T Consensus 103 -----~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~ 177 (242)
T 3bos_A 103 -----EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDD 177 (242)
T ss_dssp -----GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGG
T ss_pred -----cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHH
Confidence 3457899999976532 121210 0011232 5777776422 1222222357899999999
Q ss_pred HHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 242 EAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 242 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
+..+++...+...+...+ .+..+.+++.++|.+-.+..+-.
T Consensus 178 ~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp GHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 999999887753322122 34566788899998876655443
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.97 E-value=0.00016 Score=74.07 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=90.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+-+-|+|++|+|||++|+.+++.... . .+.+..+... .+ .........+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~------~-~~~i~~~~~~------------~g------~~~~~~~~~~~~~ 116 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF------P-FIKICSPDKM------------IG------FSETAKCQAMKKI 116 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC------S-EEEEECGGGC------------TT------CCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC------C-EEEEeCHHHh------------cC------CchHHHHHHHHHH
Confidence 44678889999999999999999987422 1 1222222100 00 0111112233444
Q ss_pred HHHHHcCCeEEEEEeCCCccc-----------c-cchhc--CC-CCCCC--cEEEEEcCChhhhhc---ccc-ccccccC
Q 048180 178 LQTLLETGKILLILDNMRKAF-----------S-LEEIG--IP-TLSNS--LRIIITSPSSSLCRQ---MKC-RERFALN 236 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~-----------~-~~~l~--~~-~~~~g--s~IivTTr~~~v~~~---~~~-~~~~~l~ 236 (824)
+......+..+|+|||++... . .+.+. .. ....+ ..||.||........ ... ...+.+.
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p 196 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVP 196 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECC
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCC
Confidence 444445678999999987530 0 11121 11 11123 356677776643222 111 3467888
Q ss_pred CCCh-HHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCC------ChHHHHHHHHHHhhhcCCChHHHHHHHHHHHh
Q 048180 237 LLTD-EEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGG------LPLAIITFAKHHLKFIGFDFISWKRALMSELD 307 (824)
Q Consensus 237 ~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G------lPlai~~~g~~l~~~~~~~~~~w~~~~~~~~~ 307 (824)
+++. ++...++.... . .+ .+....|++.+.| ++-++..+-..-. ......+..+++.+..
T Consensus 197 ~l~~r~~i~~i~~~~~-~----~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~---~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 197 NIATGEQLLEALELLG-N----FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ---MDPEYRVRKFLALLRE 263 (272)
T ss_dssp CEEEHHHHHHHHHHHT-C----SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT---SCGGGHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcC-C----CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhh---hchHHHHHHHHHHHHH
Confidence 8888 66666655431 1 11 2345677888877 3444333333221 2334566666655443
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.93 E-value=4.1e-05 Score=82.60 Aligned_cols=173 Identities=13% Similarity=0.094 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcc-----cccCCCcchhhhHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKID-----FVLSSDESVRDNAILL 174 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l 174 (824)
...+-|+|+.|+||||+|+.+++..... ..+. ...+........+..... ..... ....+....+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 107 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE--TGIT-------ATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDL 107 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCT--TCSC-------SSCCSSSHHHHHHHTSCCSSCEEEETTC-SCCSSCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC--CCCC-------CCCCcccHHHHHHhccCCCceEEecccc-cCCHHHHHHH
Confidence 3578899999999999999999876431 1110 000110111111111100 00000 0011112222
Q ss_pred HHHHHHH-HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChh-hhhc-cccccccccCCCChHHHHHHH
Q 048180 175 ENALQTL-LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSS-LCRQ-MKCRERFALNLLTDEEAYLLL 247 (824)
Q Consensus 175 ~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf 247 (824)
.+.+... ..+++.+||+||++... .++.+. +.....+..+|++|.... +... ......+++.+++.++..+++
T Consensus 108 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l 187 (373)
T 1jr3_A 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 (373)
T ss_dssp HHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred HHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHH
Confidence 2222100 12567899999997653 233331 111223456666665432 2111 112257889999999999998
Q ss_pred HHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 248 INEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
...+...+...+ .+....|++.++|.|..+..+..
T Consensus 188 ~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 188 EHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 877643321112 24467789999999988766554
No 174
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.90 E-value=0.00023 Score=72.38 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=82.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-|-|+|++|+|||++|+.+++.... ..+.+..+.-.+ .. .......+...+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~~~~~~----------~~---------~~~~~~~~~~~~ 91 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAGAEFVE----------VI---------GGLGAARVRSLF 91 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEETTTTSS----------SS---------TTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEechHHHHh----------hc---------cChhHHHHHHHH
Confidence 3456789999999999999999987532 123344332111 00 001112233333
Q ss_pred HHHHcCCeEEEEEeCCCccc-------------cc----chhc---CCC-CCCCcEEEEEcCChhhhh-cc----ccccc
Q 048180 179 QTLLETGKILLILDNMRKAF-------------SL----EEIG---IPT-LSNSLRIIITSPSSSLCR-QM----KCRER 232 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~-------------~~----~~l~---~~~-~~~gs~IivTTr~~~v~~-~~----~~~~~ 232 (824)
.........+|++||++... .. ..+. ... ...+..||.||....... .. .....
T Consensus 92 ~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~ 171 (262)
T 2qz4_A 92 KEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRH 171 (262)
T ss_dssp HHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEE
T ss_pred HHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeE
Confidence 33334567999999997641 11 1110 011 122346666665543211 11 12246
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPL-AIITF 283 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 283 (824)
+.+...+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 172 i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 172 VFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 778899999999998887654331 11112234677888888753 44433
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=5.9e-05 Score=84.93 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+.+-|+|++|+||||+|+.+++... + ..+.+..+...... +....+........ .........+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~------~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~----~~~~~~~~~~~~ 143 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG------Y-DILEQNASDVRSKT-LLNAGVKNALDNMS----VVGYFKHNEEAQ 143 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT------C-EEEEECTTSCCCHH-HHHHTGGGGTTBCC----STTTTTC----C
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC------C-CEEEEeCCCcchHH-HHHHHHHHHhcccc----HHHHHhhhhhhh
Confidence 347899999999999999999998752 2 23444444443332 33333222211100 000000000000
Q ss_pred HHHHcCCeEEEEEeCCCcccc-----cchhcCCCCCCCcEEEEEcCChh---hhhccccccccccCCCChHHHHHHHHHH
Q 048180 179 QTLLETGKILLILDNMRKAFS-----LEEIGIPTLSNSLRIIITSPSSS---LCRQMKCRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~gs~IivTTr~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
...+++.+||+|+++.... +..+..-....+..||+++.... +.........+.+.+++.++..+.+...
T Consensus 144 --~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 144 --NLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp --CSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHH
T ss_pred --hccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHH
Confidence 0126788999999976532 12221001112334555544322 2221122346889999999999998887
Q ss_pred hcCcCCCCchhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 048180 251 VGLAGKVLEGEIEFGLKNIAKKCGG-LPLAIITFAK 285 (824)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~g~ 285 (824)
+...+...++ +....|++.++| ++-|+..+..
T Consensus 222 ~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 222 AIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred HHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 7543321222 245678889999 4555555543
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=6.9e-06 Score=76.89 Aligned_cols=36 Identities=8% Similarity=0.225 Sum_probs=18.9
Q ss_pred Ccceeeecccccceee---ccccCCCCCEEEEecCCCccc
Q 048180 684 NTSELLLVHCNAVTQM---TIPNLQNLKFLEIFNCEGLKY 720 (824)
Q Consensus 684 ~L~~L~l~~~~~~~~~---~l~~l~~L~~L~L~~c~~l~~ 720 (824)
.|++|++++|. +++. .+.++++|+.|+|++|..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 45666666654 3322 234455566666665555544
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.87 E-value=0.00011 Score=75.89 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=85.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-+-|+|++|+||||+|+.+++.... ..+.+..+.-.. . ........+...+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~~~~~~~--------------~-----~~~~~~~~~~~~~ 103 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVVGSELVK--------------K-----FIGEGASLVKDIF 103 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEEGGGGCC--------------C-----STTHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEehHHHHH--------------h-----ccchHHHHHHHHH
Confidence 4566889999999999999999887432 122232221110 0 0011112233333
Q ss_pred HHHHcCCeEEEEEeCCCccc------------cc-chh----c-C-C-CCCCCcEEEEEcCChhhhh-----cccccccc
Q 048180 179 QTLLETGKILLILDNMRKAF------------SL-EEI----G-I-P-TLSNSLRIIITSPSSSLCR-----QMKCRERF 233 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~------------~~-~~l----~-~-~-~~~~gs~IivTTr~~~v~~-----~~~~~~~~ 233 (824)
......+..+|+|||++... .. ..+ . . . ....+..||.||....... .......+
T Consensus 104 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i 183 (285)
T 3h4m_A 104 KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRII 183 (285)
T ss_dssp HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEE
T ss_pred HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEE
Confidence 33334667899999996531 11 111 0 0 1 1123447777886543321 11123478
Q ss_pred ccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCC-ChHHHHHH
Q 048180 234 ALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGG-LPLAIITF 283 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~ 283 (824)
.+...+.++-.+++...+.......... ...+++.+.| .|-.|..+
T Consensus 184 ~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 184 EVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 8999999999999988876543212222 3556777777 45444443
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=8.6e-06 Score=76.25 Aligned_cols=93 Identities=5% Similarity=-0.010 Sum_probs=68.0
Q ss_pred CCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCCCCCCc-ccccccCeEeccCCcchhccc-cC
Q 048180 705 QNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDENSNPQ-VCWRSLRKLILSNLPELRFMY-SG 782 (824)
Q Consensus 705 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-~~~p~L~~L~l~~~~~L~~~~-~~ 782 (824)
.+|+.|++++|. +++.. ...+..+++|+.|+|++|..+++-.-..-. .. ...++|++|+|++|+++++-- ..
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~----~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLS----QLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHH----TCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHH----hcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 469999999986 65542 234578999999999999988764321100 00 023689999999999887531 23
Q ss_pred cccCCCccEEEecCCCCcCCC
Q 048180 783 EAQCDFVQTIGIWSCCKLERF 803 (824)
Q Consensus 783 ~~~lpsL~~L~i~~C~~L~~l 803 (824)
+..+++|++|+|++|++++..
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCH
T ss_pred HhcCCCCCEEECCCCCCCCch
Confidence 567999999999999999863
No 179
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=2.6e-05 Score=75.05 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+.+.|+|++|+||||+|+.+++....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999998643
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.77 E-value=0.00014 Score=76.62 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
...+.|+|++|+||||||+.+++..... .+ ..+++.. .++..++...+... ........+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~-~~~~i~~------~~~~~~~~~~~~~~---------~~~~~~~~~- 96 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GY-RVIYSSA------DDFAQAMVEHLKKG---------TINEFRNMY- 96 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TC-CEEEEEH------HHHHHHHHHHHHHT---------CHHHHHHHH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEH------HHHHHHHHHHHHcC---------cHHHHHHHh-
Confidence 4578899999999999999999987542 11 2344443 33334443333210 111222222
Q ss_pred HHHcCCeEEEEEeCCCcccc---cc-hhcCC---CCCCCcEEEEEcCCh---------hhhhccccccccccCCCChHHH
Q 048180 180 TLLETGKILLILDNMRKAFS---LE-EIGIP---TLSNSLRIIITSPSS---------SLCRQMKCRERFALNLLTDEEA 243 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~---~~-~l~~~---~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~ 243 (824)
.+.-+|++||+..... +. .+... ....|.+||+||... .+.+.+....++++++ +.++-
T Consensus 97 ----~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~ 171 (324)
T 1l8q_A 97 ----KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTR 171 (324)
T ss_dssp ----HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHH
T ss_pred ----cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHH
Confidence 2467999999976542 21 12111 123456788877542 1222233335688999 99999
Q ss_pred HHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 244 YLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 244 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
.+++...+...+...+ .+....|++.+ |..-.+
T Consensus 172 ~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 172 FKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHH
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHH
Confidence 9999888753332122 24456677788 665433
No 181
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.63 E-value=0.00093 Score=72.46 Aligned_cols=309 Identities=11% Similarity=0.115 Sum_probs=169.2
Q ss_pred CccEEEeccCCCcCCCC--ccCCCCccEEEcCCCC--CcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEE
Q 048180 447 DVERVSLMGNNLRELRT--CPMFCKLTTLFLQGNP--LDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVL 521 (824)
Q Consensus 447 ~~~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L 521 (824)
.++.+.+..+ ++.+.. +.+|.+|+.+.+..+. .+..++...|..+..|+.+.+.++ +..++. .+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3677777643 555554 8899999999987652 256677777888999988877654 444443 56788999999
Q ss_pred ecccccccccCC--CcccCCCccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCccc
Q 048180 522 LLQNCIYLTCLP--SLAELVELMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDLL 599 (824)
Q Consensus 522 ~L~~c~~~~~lp--~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l~ 599 (824)
.+.. .+..++ .+..+.+|+.+.+..+ ++.++...-...+|..+.+..+. ..+....+....+|...........
T Consensus 143 ~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcc-cccccchhhhccccceecccccccc
Confidence 9964 356666 3888999999998754 55555543344678888876543 3343445677778877766543321
Q ss_pred cccccccchhh--hhchHhhhcCCCccEEEEEecCccchhhhhhhhhcccceeEEEEeccCCCccccccchhhhccCCCC
Q 048180 600 CLPRSLMQEDY--AAFIEDVRKLRNLNVFDFTFVSLQSFKEYISSQHWLWLQSYKFSVGALGKGKLRGNTLAFMKEFPND 677 (824)
Q Consensus 600 ~~~~~~~~~~~--~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 677 (824)
........... ............+....+. +.+...... .-..+..|+.+.+. .....++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~-aF~~c~~L~~i~lp--------------~~~~~I~~~ 282 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETH-AFDSCAYLASVKMP--------------DSVVSIGTG 282 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTT-TTTTCSSCCEEECC--------------TTCCEECTT
T ss_pred cccceeecccccccccccccccccccceEEcC-CcceEcccc-eeeecccccEEecc--------------cccceecCc
Confidence 11100000000 0000000011111211111 001100000 00122344444321 111122333
Q ss_pred CccCCcCcceeeecccccceee---ccccCCCCCEEEEecCCCccccccchhhhhccccceeccccccchhhhhcccCCC
Q 048180 678 PIWLPWNTSELLLVHCNAVTQM---TIPNLQNLKFLEIFNCEGLKYLFKYGVWCCLRNLEELVIANCRNLEKVIEQDDDE 754 (824)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~~~~~---~l~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~ 754 (824)
.+....+|+.+.+.. .++.. .+.++.+|+.+.|.+ +++.+.. ..+.++.+|+.+.|.. .++.|...
T Consensus 283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~C~~L~~i~ip~--sv~~I~~~---- 351 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-DAFAGCEQLERIAIPS--SVTKIPES---- 351 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEECT--TCCBCCGG----
T ss_pred ccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-hHhhCCCCCCEEEECc--ccCEEhHh----
Confidence 344566777777743 22222 566788999999864 4666643 4567789999998863 35555421
Q ss_pred CCCCcccccccCeEeccCCcchhccccCcccCCCccEEEe
Q 048180 755 NSNPQVCWRSLRKLILSNLPELRFMYSGEAQCDFVQTIGI 794 (824)
Q Consensus 755 ~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~lpsL~~L~i 794 (824)
.+..+++|+.+.+.+.. ..+ ..+..+.+|+.+.+
T Consensus 352 ---aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 352 ---AFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPV 385 (394)
T ss_dssp ---GGTTCTTCCEEEESSCH--HHH-HTCBCCCCC-----
T ss_pred ---HhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEe
Confidence 34467889999888752 222 23445556666554
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.57 E-value=0.00028 Score=77.37 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=85.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCc-CCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYE-DDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
.+..+-|+|++|+||||+|+.+++..... | +.++.. ....+ ++.++.. .
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~----f-----~~l~a~~~~~~~-ir~~~~~--------------------a 98 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANAD----V-----ERISAVTSGVKE-IREAIER--------------------A 98 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTCE----E-----EEEETTTCCHHH-HHHHHHH--------------------H
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCC----e-----EEEEeccCCHHH-HHHHHHH--------------------H
Confidence 45778999999999999999999874321 2 222221 11211 1111111 1
Q ss_pred HHHHHcCCeEEEEEeCCCccc--ccchhcCCCCCCCc-EEEE-EcCChh--hh-hccccccccccCCCChHHHHHHHHHH
Q 048180 178 LQTLLETGKILLILDNMRKAF--SLEEIGIPTLSNSL-RIII-TSPSSS--LC-RQMKCRERFALNLLTDEEAYLLLINE 250 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~gs-~Iiv-TTr~~~--v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (824)
......+++.+|++|+++... +.+.+ ++....|. .+|. ||.+.. +. .......++.+++++.++...++.+.
T Consensus 99 ~~~~~~~~~~iLfIDEI~~l~~~~q~~L-L~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 99 RQNRNAGRRTILFVDEVHRFNKSQQDAF-LPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp HHHHHTTCCEEEEEETTTCC------CC-HHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred HHhhhcCCCcEEEEeChhhhCHHHHHHH-HHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHH
Confidence 111113678999999998653 22322 11111243 4443 555532 11 11122247889999999999999887
Q ss_pred hcCcCC----CCchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 048180 251 VGLAGK----VLEGEIEFGLKNIAKKCGGLPLAIITFAKH 286 (824)
Q Consensus 251 ~~~~~~----~~~~~~~~~~~~i~~~c~GlPlai~~~g~~ 286 (824)
+..... ....--.+..+.|++.++|.+-.+..+-..
T Consensus 178 l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 178 MEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp HHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 654211 011122345677888899988666544443
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.56 E-value=0.00096 Score=70.43 Aligned_cols=167 Identities=10% Similarity=0.005 Sum_probs=86.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccccc---CCC-cchhhhHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVL---SSD-ESVRDNAILLE 175 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~~~-~~~~~~~~~l~ 175 (824)
...+-++|+.|+||||+|+.+.+.........+ ..+......+.+...-..+. ... .......+.++
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~---------~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir 94 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGH---------KSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVR 94 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT---------BCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC---------CCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHH
Confidence 457889999999999999999987643200000 00000001111111000000 000 00011122222
Q ss_pred HHHHHH----HcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChh-hhhcc-ccccccccCCCChHHHHH
Q 048180 176 NALQTL----LETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSS-LCRQM-KCRERFALNLLTDEEAYL 245 (824)
Q Consensus 176 ~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~ 245 (824)
+.+... ..+++-++|+|+++... ..+.+. +..+..+..+|++|.+.. +.... .....+++.+++.++..+
T Consensus 95 ~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~ 174 (334)
T 1a5t_A 95 EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVT 174 (334)
T ss_dssp HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHH
Confidence 221111 12567889999998763 223221 112234556666665532 32221 222478999999999999
Q ss_pred HHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 048180 246 LLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITF 283 (824)
Q Consensus 246 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 283 (824)
.+...+. .+ .+....+++.++|.|..+..+
T Consensus 175 ~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 175 WLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp HHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred HHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 8877651 11 234567889999999766443
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.55 E-value=0.00049 Score=72.46 Aligned_cols=172 Identities=13% Similarity=0.058 Sum_probs=84.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
..++-+.|++|+||||+|+.+++.... ..+.+..+. .. .+.+++++........
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~~~~-~~-~~~i~~~~~~~~~~~~----------------- 101 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVNGSD-CK-IDFVRGPLTNFASAAS----------------- 101 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEETTT-CC-HHHHHTHHHHHHHBCC-----------------
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEcccc-cC-HHHHHHHHHHHHhhcc-----------------
Confidence 467788899999999999999887422 234444333 22 1222221111100000
Q ss_pred HHHcCCeEEEEEeCCCccc---ccchhc--CCCCCCCcEEEEEcCChhh-hhc-cccccccccCCCChHHHHHHH-----
Q 048180 180 TLLETGKILLILDNMRKAF---SLEEIG--IPTLSNSLRIIITSPSSSL-CRQ-MKCRERFALNLLTDEEAYLLL----- 247 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~---~~~~l~--~~~~~~gs~IivTTr~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf----- 247 (824)
..+++-+||+||++... ..+.+. ......+.+||+||....- ... ......+++++++.++-.+++
T Consensus 102 --~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 102 --FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp --CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred --cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 01478899999998764 222221 0111234577777765331 111 011136889999988743332
Q ss_pred --HHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHHhhhcCCChHHHHHH
Q 048180 248 --INEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAKHHLKFIGFDFISWKRA 301 (824)
Q Consensus 248 --~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~l~~~~~~~~~~w~~~ 301 (824)
...+...+...++ .+....|++.++|.+..+...-..+...+.-+.+..+.+
T Consensus 180 ~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~~~~~~i~~~~v~~~ 233 (324)
T 3u61_B 180 RLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSYSSKGVLDAGILSLV 233 (324)
T ss_dssp HHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHHGGGTCBCC------
T ss_pred HHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 2222222211111 245677888898877654433333322222344444444
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.54 E-value=0.00064 Score=72.99 Aligned_cols=49 Identities=6% Similarity=-0.072 Sum_probs=33.1
Q ss_pred ccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhC-CChHHHHHH
Q 048180 232 RFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCG-GLPLAIITF 283 (824)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~-GlPlai~~~ 283 (824)
.+.+.+++.++..+++...+...+...+ .+....|++.+. |.|..+..+
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~~~~~~~---~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEEEDVEMS---EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHHHSCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCCCHHHHHHH
Confidence 4789999999999999887754332122 245567888887 777554433
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.51 E-value=7.8e-05 Score=71.10 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
-..+.|+|+.|.||||||+.+++..... .+ + .+++++ ..++...+......... . .+.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g-~-~~~~~~------~~~~~~~~~~~~~~~~~-----~----~~~~~~- 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEK-KG-I-RGYFFD------TKDLIFRLKHLMDEGKD-----T----KFLKTV- 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHH-SC-C-CCCEEE------HHHHHHHHHHHHHHTCC-----S----HHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH-cC-C-eEEEEE------HHHHHHHHHHHhcCchH-----H----HHHHHh-
Confidence 4689999999999999999999987532 11 1 223333 44455554443321111 0 122223
Q ss_pred HHHcCCeEEEEEeCCCc--ccccch--hc--C-CCCCCCcEEEEEcCC
Q 048180 180 TLLETGKILLILDNMRK--AFSLEE--IG--I-PTLSNSLRIIITSPS 220 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~--~~~~~~--l~--~-~~~~~gs~IivTTr~ 220 (824)
.+.-+|||||++. .+.|.. +. + .....|..||+||..
T Consensus 99 ----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 99 ----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2566899999984 334432 10 1 111256678888864
No 187
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=3.9e-05 Score=73.53 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=19.3
Q ss_pred hcCCCCCcEEEecCC-CCcc-----ccccccCcccccEEecccc
Q 048180 489 FNSFPNLKILNLSDT-SMGI-----LPKSLSSLKYLTVLLLQNC 526 (824)
Q Consensus 489 ~~~l~~Lr~L~L~~~-~~~~-----lp~~i~~l~~L~~L~L~~c 526 (824)
+...+.|+.|+|++| .+.. +...+....+|++|+|++|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 445566666666666 5422 2233344444555555544
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.49 E-value=0.00017 Score=70.17 Aligned_cols=96 Identities=21% Similarity=0.168 Sum_probs=54.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+.+.|+|++|+||||||+.+++..... ...++|+.+ .++...+...... ... ..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~~- 114 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR----NVSSLIVYV------PELFRELKHSLQD-----QTM----NEKLDYIK- 114 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT----TCCEEEEEH------HHHHHHHHHC--------CCC----HHHHHHHH-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEh------HHHHHHHHHHhcc-----chH----HHHHHHhc-
Confidence 678899999999999999999987542 334566654 3444444433211 011 12223332
Q ss_pred HHcCCeEEEEEeCCCcc--cccchhc-C-CC----CCCCcEEEEEcCC
Q 048180 181 LLETGKILLILDNMRKA--FSLEEIG-I-PT----LSNSLRIIITSPS 220 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~--~~~~~l~-~-~~----~~~gs~IivTTr~ 220 (824)
.. -+|||||++.. ..|..-. + .. ...+.++|+||..
T Consensus 115 ---~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 115 ---KV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---HS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---CC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 22 39999999653 3443211 1 01 1245578888864
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.48 E-value=0.00069 Score=70.73 Aligned_cols=132 Identities=12% Similarity=0.101 Sum_probs=72.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
.....+-|+|++|+|||++|+.+++..... ......-++.++.. .+..... ......+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~------------~l~~~~~-----g~~~~~~~~~ 125 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL--GYVRKGHLVSVTRD------------DLVGQYI-----GHTAPKTKEV 125 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHT--TSSSSCCEEEECGG------------GTCCSST-----TCHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCcCCCcEEEEcHH------------Hhhhhcc-----cccHHHHHHH
Confidence 345578899999999999999999887542 22211123333311 1110000 0111222333
Q ss_pred HHHHHcCCeEEEEEeCCCcc-----------cccchhc--CCCCCCCcEEEEEcCChh----------hhhccccccccc
Q 048180 178 LQTLLETGKILLILDNMRKA-----------FSLEEIG--IPTLSNSLRIIITSPSSS----------LCRQMKCRERFA 234 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~-----------~~~~~l~--~~~~~~gs~IivTTr~~~----------v~~~~~~~~~~~ 234 (824)
+... +.-+|++|+++.. .....+. +.....+..||.||.... +.+.+ ...+.
T Consensus 126 ~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~ 200 (309)
T 3syl_A 126 LKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIE 200 (309)
T ss_dssp HHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEE
T ss_pred HHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEE
Confidence 3221 3459999999844 1112221 111223447777775432 22222 25788
Q ss_pred cCCCChHHHHHHHHHHhcC
Q 048180 235 LNLLTDEEAYLLLINEVGL 253 (824)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~ 253 (824)
+.+++.++-.+++...+..
T Consensus 201 ~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 201 FPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECCCCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 9999999999998887654
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.47 E-value=0.0022 Score=67.21 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=83.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-|-++|++|+|||+||+++++.... . ..+.+..+.-.+ ... .... ..+...+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~---~---~~~~i~~~~l~~--------------~~~--g~~~---~~~~~lf 98 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANN---S---TFFSISSSDLVS--------------KWL--GESE---KLVKNLF 98 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTS---C---EEEEEECCSSCC--------------SSC--CSCH---HHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCC---C---cEEEEEhHHHHh--------------hhh--hHHH---HHHHHHH
Confidence 3467889999999999999999987411 1 122233322110 000 0111 2222223
Q ss_pred HHHHcCCeEEEEEeCCCcccc---------c----chh-----cCCCCCCCcEEEEEcCChhh-----hhcccccccccc
Q 048180 179 QTLLETGKILLILDNMRKAFS---------L----EEI-----GIPTLSNSLRIIITSPSSSL-----CRQMKCRERFAL 235 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~---------~----~~l-----~~~~~~~gs~IivTTr~~~v-----~~~~~~~~~~~l 235 (824)
...-..+..+|++|+++.... . ..+ .......+-.||.||..... .+ .....+.+
T Consensus 99 ~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i 176 (322)
T 1xwi_A 99 QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176 (322)
T ss_dssp HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEEC
T ss_pred HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEe
Confidence 222246788999999976510 0 011 01111233355556644321 22 22346778
Q ss_pred CCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC-hHHHHHHH
Q 048180 236 NLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL-PLAIITFA 284 (824)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~g 284 (824)
...+.++-.+++..++........ ......|++.+.|. +-.|..+.
T Consensus 177 ~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 177 PLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888888888887654321111 23456788888886 43444443
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.43 E-value=0.0022 Score=67.27 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=83.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+-|-++|++|+|||++|+++++.... .| +.|.. .++ .... .......+...+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~----~~---~~v~~------~~l----~~~~---------~g~~~~~~~~~f~ 104 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS----TF---FSVSS------SDL----VSKW---------MGESEKLVKQLFA 104 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC----EE---EEEEH------HHH----HTTT---------GGGHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC----CE---EEEch------HHH----hhcc---------cchHHHHHHHHHH
Confidence 467889999999999999999987532 12 22222 111 1110 0111122333333
Q ss_pred HHHcCCeEEEEEeCCCcccc-------------cchh-----cCCCCCCCcEEEEEcCChhhhh-cc--ccccccccCCC
Q 048180 180 TLLETGKILLILDNMRKAFS-------------LEEI-----GIPTLSNSLRIIITSPSSSLCR-QM--KCRERFALNLL 238 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~-------------~~~l-----~~~~~~~gs~IivTTr~~~v~~-~~--~~~~~~~l~~L 238 (824)
..-..+..+|+||+++.... ...+ .......+..||.||....... .+ .....+.+...
T Consensus 105 ~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p 184 (322)
T 3eie_A 105 MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLP 184 (322)
T ss_dssp HHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCC
T ss_pred HHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCC
Confidence 33346778999999975421 1111 0111223345665766532211 00 12345678888
Q ss_pred ChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC-hHHHHHH
Q 048180 239 TDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL-PLAIITF 283 (824)
Q Consensus 239 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 283 (824)
+.++-.+++..++........ ......|++.+.|. +-.|..+
T Consensus 185 ~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 185 DLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 899999999888765432111 22346677888774 4444433
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.0026 Score=65.82 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+.+.|+|++|+||||+|+.+++.... ..+.+..+.-.. .. ..... ..+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~~~l~~--------------~~--~~~~~---~~~~~~~ 106 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNISAASLTS--------------KY--VGDGE---KLVRALF 106 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEESTTTSS--------------SS--CSCHH---HHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEeeHHHHhh--------------cc--cchHH---HHHHHHH
Confidence 3467889999999999999999886422 123333322110 00 00111 1222222
Q ss_pred HHHHcCCeEEEEEeCCCccccc-------------chh-----cCCCCC--CCcEEEEEcCChh-----hhhcccccccc
Q 048180 179 QTLLETGKILLILDNMRKAFSL-------------EEI-----GIPTLS--NSLRIIITSPSSS-----LCRQMKCRERF 233 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~~-------------~~l-----~~~~~~--~gs~IivTTr~~~-----v~~~~~~~~~~ 233 (824)
......+..+|++|+++....- ..+ ..+... .+..||.||.... +.+. ....+
T Consensus 107 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i 184 (297)
T 3b9p_A 107 AVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FTKRV 184 (297)
T ss_dssp HHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CCEEE
T ss_pred HHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CCeEE
Confidence 2223467789999999754210 001 112111 2335666666532 2222 22456
Q ss_pred ccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 048180 234 ALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPL-AIITF 283 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 283 (824)
.+...+.++-..++...+........ .+....+++.+.|.+- ++..+
T Consensus 185 ~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 185 YVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 67777778878888776644321111 2345678888888775 44443
No 193
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.40 E-value=0.0054 Score=65.93 Aligned_cols=124 Identities=10% Similarity=0.096 Sum_probs=65.8
Q ss_pred ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCCC--cccCCC
Q 048180 464 CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLPS--LAELVE 540 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp~--i~~L~~ 540 (824)
+....+|+.+.+... +..++...|.+|.+|+.++|..+ ++.++. .+.++ .|..+.+.. .++.++. +.. .+
T Consensus 42 ~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT-CC
T ss_pred cccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceecc-CC
Confidence 444556777766543 56666666777777777777543 444443 33444 455555542 3455552 333 36
Q ss_pred ccEEeccCCCCcccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecC
Q 048180 541 LMVLDVSGSGIAEFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGC 596 (824)
Q Consensus 541 L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~ 596 (824)
|+.+.+..+ +..+......-.+|..+.+..+ +..+....+....+|+.+.+..+
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred cccccCCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccc
Confidence 777777543 3333332222234555554432 23343444566666776665543
No 194
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.39 E-value=0.0057 Score=64.59 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=81.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
....|-|+|++|+|||++|+.+++.... . .+.+..+..... ..+...+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~----~---~~~~~~~~~~~~-------------------------~~~~~~~ 101 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSA----N---IKTTAAPMIEKS-------------------------GDLAAIL 101 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTC----C---EEEEEGGGCCSH-------------------------HHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC----C---eEEecchhccch-------------------------hHHHHHH
Confidence 3456889999999999999999776422 1 222322211111 1111111
Q ss_pred HHHHcCCeEEEEEeCCCcccc--cchh-------cCC-------------CCCCCcEEEEEcCChhh-hhcc--cccccc
Q 048180 179 QTLLETGKILLILDNMRKAFS--LEEI-------GIP-------------TLSNSLRIIITSPSSSL-CRQM--KCRERF 233 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~--~~~l-------~~~-------------~~~~gs~IivTTr~~~v-~~~~--~~~~~~ 233 (824)
.. ..+..+|+||+++.... ...+ ... ...++.++|.||..... ...+ .....+
T Consensus 102 ~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i 179 (338)
T 3pfi_A 102 TN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQF 179 (338)
T ss_dssp HT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEE
T ss_pred Hh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEe
Confidence 11 14556788888875521 1111 000 00112355555554221 1111 123578
Q ss_pred ccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 234 ALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
.+.+++.++...++...+...+. .--.+..+.|++.+.|.|-.+..+..
T Consensus 180 ~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 180 RLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp ECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999999999887654321 11234566788889999865554443
No 195
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=0.00017 Score=66.24 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-..++|+|..|.|||||++.+++....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999997653
No 196
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.00032 Score=74.88 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=59.7
Q ss_pred CCeEEEEEeCCCcccc--cchhc--CCCCCCCcEEEEEcCCh-hhhhcc-ccccccccCCCChHHHHHHHHHHhcCcCCC
Q 048180 184 TGKILLILDNMRKAFS--LEEIG--IPTLSNSLRIIITSPSS-SLCRQM-KCRERFALNLLTDEEAYLLLINEVGLAGKV 257 (824)
Q Consensus 184 ~kr~LlVlDdv~~~~~--~~~l~--~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (824)
+++-++|+|++...+. .+.+. +.....+..+|++|.+. .+.... .....+++.+++.++..+.+...+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4677999999987432 12221 11112356677666542 222111 122578999999999999988877543321
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 048180 258 LEGEIEFGLKNIAKKCGGLPLAIITFAKHH 287 (824)
Q Consensus 258 ~~~~~~~~~~~i~~~c~GlPlai~~~g~~l 287 (824)
.+ -.+....|++.++|.+..+..+...+
T Consensus 213 ~~--~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 213 LE--TKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp EC--CSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred CC--cHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 02356778899999987665554433
No 197
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=9.4e-05 Score=70.86 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=85.9
Q ss_pred cccccCcccccEEeccccccccc-----CC-CcccCCCccEEeccCCCCcc-----cCcccccCCCCcEEeccCcccccc
Q 048180 509 PKSLSSLKYLTVLLLQNCIYLTC-----LP-SLAELVELMVLDVSGSGIAE-----FPDGMNHLTKLLFLNLSRTRVRNF 577 (824)
Q Consensus 509 p~~i~~l~~L~~L~L~~c~~~~~-----lp-~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~ 577 (824)
...+...++|++|+|++|..+.. +. .+...++|++|+|++|.+.. +...+...++|++|++++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34567788999999998733432 22 26677899999999998862 445566778999999999988432
Q ss_pred ----chhhhcCCCCCcEEEe--ecCccccccccccchhhhhchHhhhcCCCccEEEEEecCccc
Q 048180 578 ----PLHLVTSLHNLQEFSM--IGCDLLCLPRSLMQEDYAAFIEDVRKLRNLNVFDFTFVSLQS 635 (824)
Q Consensus 578 ----~~~~l~~L~~L~~L~l--~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 635 (824)
....+...++|++|++ .+|.+.. ++...+...+...+.|+.|++++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~-------~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGN-------NVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCH-------HHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCH-------HHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 1233677789999999 7776432 1333445667777899999999887653
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.33 E-value=0.0018 Score=68.88 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+-|-++|++|+|||+||+++++..... .+.+.. .++. .... .... ..+...+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~-------~~~v~~------~~l~----~~~~------g~~~---~~~~~~f~ 137 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANST-------FFSVSS------SDLV----SKWM------GESE---KLVKQLFA 137 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCE-------EEEEEH------HHHH----SCC---------CH---HHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC-------EEEeeH------HHHh----hhhc------chHH---HHHHHHHH
Confidence 3457899999999999999999975321 222222 1211 1110 0011 12222232
Q ss_pred HHHcCCeEEEEEeCCCcccc-------------cchh-----cCCCCCCCcEEEEEcCChh-----hhhccccccccccC
Q 048180 180 TLLETGKILLILDNMRKAFS-------------LEEI-----GIPTLSNSLRIIITSPSSS-----LCRQMKCRERFALN 236 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~~-------------~~~l-----~~~~~~~gs~IivTTr~~~-----v~~~~~~~~~~~l~ 236 (824)
..-..+..+|+||+++.... ...+ .......+..||.||.... +.+ .....+.+.
T Consensus 138 ~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~ 215 (355)
T 2qp9_X 138 MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 215 (355)
T ss_dssp HHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECC
T ss_pred HHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeC
Confidence 22246789999999986421 1111 0111123345555665432 222 223466788
Q ss_pred CCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC-hHHHHHHH
Q 048180 237 LLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL-PLAIITFA 284 (824)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~g 284 (824)
..+.++-.+++..++........ ......|++.+.|. +-.|..+.
T Consensus 216 ~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 216 LPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888888998887754321111 23346788888884 44444443
No 199
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00048 Score=73.44 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=88.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccc-eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFN-TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.+.++|++|+||||+|+.+.+..... ..+. ..+.+..+....... +.+.+.......... .... ....
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-------~~~~ 128 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGP--DLMKSRILELNASDERGISI-VREKVKNFARLTVSK-PSKH-------DLEN 128 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHH--HHHTTSEEEECSSSCCCHHH-HTTHHHHHHHSCCCC-CCTT-------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC--cccccceEEEccccccchHH-HHHHHHHHhhhcccc-cchh-------hccc
Confidence 38899999999999999999876421 0111 123333333222222 222222111100000 0000 0000
Q ss_pred HHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChh-hhhcc-ccccccccCCCChHHHHHHHHHHhcCc
Q 048180 181 LLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSS-LCRQM-KCRERFALNLLTDEEAYLLLINEVGLA 254 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 254 (824)
.-.+++-+|++|+++... ..+.+. +.......++|++|.... +.... .....+.+.+++.++....+...+...
T Consensus 129 ~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~ 208 (353)
T 1sxj_D 129 YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQE 208 (353)
T ss_dssp SCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHh
Confidence 011355799999987653 222221 111123456777664432 21111 112368899999999999988876543
Q ss_pred CCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 255 GKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
+...+ .+..+.|++.++|.|..+..+..
T Consensus 209 ~~~i~---~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 209 NVKCD---DGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp TCCCC---HHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 32122 34567899999999987655443
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.30 E-value=0.0023 Score=66.39 Aligned_cols=151 Identities=12% Similarity=0.132 Sum_probs=80.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+.|.|+|++|.||||||+.+++.... . ++.+ +..++........ .. .+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~----~-----~i~v----~~~~l~~~~~g~~----------~~---~~~~~ 100 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQA----N-----FISI----KGPELLTMWFGES----------EA---NVREI 100 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTC----E-----EEEE----CHHHHHHHHHTTC----------TT---HHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCC----C-----EEEE----EhHHHHhhhcCch----------HH---HHHHH
Confidence 34567899999999999999999986422 1 2222 2233333221110 11 12223
Q ss_pred HHHHHcCCeEEEEEeCCCccc------------c----cchh-c--CCCC-CCCcEEEEEcCChhhh-hc-c---ccccc
Q 048180 178 LQTLLETGKILLILDNMRKAF------------S----LEEI-G--IPTL-SNSLRIIITSPSSSLC-RQ-M---KCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~------------~----~~~l-~--~~~~-~~gs~IivTTr~~~v~-~~-~---~~~~~ 232 (824)
+.........+|++|+++... . ...+ . .... ..+..||.||...... .. . .....
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~ 180 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceE
Confidence 333334677999999997421 0 0111 0 0111 2234666677654322 11 1 12346
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChH
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPL 278 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 278 (824)
+.+...+.++-.+++...+..........+ ..+++.+.|.|-
T Consensus 181 i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCH
T ss_pred EecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCH
Confidence 788888988888888777644321112222 345556667653
No 201
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.28 E-value=0.0026 Score=67.80 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=83.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-|-|+|++|+|||++|+.+++.... ..+.+..+.-.. .. .......+...+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~~~~l~~--------------~~-----~g~~~~~~~~~~ 169 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSISASSLTS--------------KW-----VGEGEKMVRALF 169 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEEGGGGCC--------------SS-----TTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEehHHhhc--------------cc-----cchHHHHHHHHH
Confidence 4567889999999999999999886421 123444332111 00 001112222222
Q ss_pred HHHHcCCeEEEEEeCCCcccc-------------cchh-----cCCCC-CCCcEEEEEcCChh-hhhcc--ccccccccC
Q 048180 179 QTLLETGKILLILDNMRKAFS-------------LEEI-----GIPTL-SNSLRIIITSPSSS-LCRQM--KCRERFALN 236 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~-------------~~~l-----~~~~~-~~gs~IivTTr~~~-v~~~~--~~~~~~~l~ 236 (824)
...-..+..+|+||+++.... ...+ ..... ..+-.||.||.... +.... .....+.+.
T Consensus 170 ~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~ 249 (357)
T 3d8b_A 170 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIP 249 (357)
T ss_dssp HHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECC
T ss_pred HHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeC
Confidence 222236778999999964310 1111 11111 12335565665432 11111 122356788
Q ss_pred CCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 048180 237 LLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGG-LPLAIITFAK 285 (824)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~g~ 285 (824)
..+.++-.+++...+........ .+....|++.+.| .+-.|..+..
T Consensus 250 ~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 250 LPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88888888888777643321111 2345678888888 4555555443
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00019 Score=72.42 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=32.1
Q ss_pred cCCCCCcEEEecCCCCcccc---ccccCcccccEEecccccccccCCCcccCC--CccEEeccCCCCc
Q 048180 490 NSFPNLKILNLSDTSMGILP---KSLSSLKYLTVLLLQNCIYLTCLPSLAELV--ELMVLDVSGSGIA 552 (824)
Q Consensus 490 ~~l~~Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~c~~~~~lp~i~~L~--~L~~L~l~~~~l~ 552 (824)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++| .++.+..+..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCc
Confidence 34666777777777664433 33445555555555553 233333333333 5555555555544
No 203
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.18 E-value=0.0033 Score=66.23 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=35.3
Q ss_pred ccccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 048180 232 RFALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFA 284 (824)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 284 (824)
.+.+++.+.++-.+++.+.+...+. ..-.+.+..|++.++|.|-.+..+-
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 5789999999999999887643221 1123457889999999997554433
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.13 E-value=0.00053 Score=69.22 Aligned_cols=77 Identities=29% Similarity=0.350 Sum_probs=46.9
Q ss_pred CCCccEEEcCCCCCcc--cCChhhhcCCCCCcEEEecCCCCccccccccCcc--cccEEecccccccccCCC--------
Q 048180 467 FCKLTTLFLQGNPLDL--QLDNDFFNSFPNLKILNLSDTSMGILPKSLSSLK--YLTVLLLQNCIYLTCLPS-------- 534 (824)
Q Consensus 467 ~~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~--~L~~L~L~~c~~~~~lp~-------- 534 (824)
+++|++|++++|.... .+| ..+..+++|+.|+|++|.+..+ ..+..+. +|++|+|++|.....+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4566666666665322 222 2346788888888888887665 3344444 788888888765544441
Q ss_pred cccCCCccEEe
Q 048180 535 LAELVELMVLD 545 (824)
Q Consensus 535 i~~L~~L~~L~ 545 (824)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34555555554
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0092 Score=63.37 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=83.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+=|-++|++|.|||.||+++++..... .+.|..+.-.+ ....+....+++.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~-------f~~v~~s~l~s-------------------k~vGese~~vr~l 233 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCK-------FIRVSGAELVQ-------------------KYIGEGSRMVREL 233 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCE-------EEEEEGGGGSC-------------------SSTTHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCC-------ceEEEhHHhhc-------------------cccchHHHHHHHH
Confidence 445668899999999999999999986432 23333332111 0111222334444
Q ss_pred HHHHHcCCeEEEEEeCCCccc----------cc------chh-c--CCCCCCCc-EEEEEcCChhhh-----hccccccc
Q 048180 178 LQTLLETGKILLILDNMRKAF----------SL------EEI-G--IPTLSNSL-RIIITSPSSSLC-----RQMKCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~----------~~------~~l-~--~~~~~~gs-~IivTTr~~~v~-----~~~~~~~~ 232 (824)
+...-+....+|++|+++... +. ..+ . ..+...+. .||.||...+.. +.-..+..
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~ 313 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRK 313 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCE
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceE
Confidence 444445778999999987431 00 011 0 11122222 455566543331 11123457
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
+.+...+.++-.++|..+..........++ ..+++.+.|.-
T Consensus 314 I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 314 IEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 888888888888899877654332122233 45677777753
No 206
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.10 E-value=0.0094 Score=65.38 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=81.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-|-++|++|+|||+||+.+++.... .-++.++... +.... .+. .......+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~--------~~~~~v~~~~----l~~~~---~g~-------~~~~~~~~f~~a 223 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANN--------STFFSISSSD----LVSKW---LGE-------SEKLVKNLFQLA 223 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCS--------SEEEEECCC-----------------------CCCTHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC--------CCEEEEeHHH----HHhhh---cch-------HHHHHHHHHHHH
Confidence 4577889999999999999999987411 1233333221 11110 010 011122222222
Q ss_pred HHHHcCCeEEEEEeCCCcccc---------c----chhcCCC-----CCCCcEEEEEcCChhhhh-cc--ccccccccCC
Q 048180 179 QTLLETGKILLILDNMRKAFS---------L----EEIGIPT-----LSNSLRIIITSPSSSLCR-QM--KCRERFALNL 237 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~---------~----~~l~~~~-----~~~gs~IivTTr~~~v~~-~~--~~~~~~~l~~ 237 (824)
-..+..+|+||+++.... . ..+.... ...+..||.||....... .+ .....+.+..
T Consensus 224 ---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~ 300 (444)
T 2zan_A 224 ---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 300 (444)
T ss_dssp ---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCC
T ss_pred ---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCC
Confidence 236778999999975410 1 1111111 123346666665432211 00 1234567777
Q ss_pred CChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC-hHHHHHH
Q 048180 238 LTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL-PLAIITF 283 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 283 (824)
.+.++-..+|..++........ ......|++.+.|. +-.|..+
T Consensus 301 P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 301 PEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 8888888888887754321111 23346788888884 4444443
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.021 Score=61.60 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=82.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+=|-++|++|.|||+||+++++..... .+.|..+.-.+ . ...+....++..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~-------~~~v~~s~l~s--------------k-----~~Gese~~ir~~ 266 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGAN-------FIFSPASGIVD--------------K-----YIGESARIIREM 266 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCE-------EEEEEGGGTCC--------------S-----SSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCC-------EEEEehhhhcc--------------c-----cchHHHHHHHHH
Confidence 456778899999999999999999986431 23333332111 0 011122333444
Q ss_pred HHHHHcCCeEEEEEeCCCccc--------cc--------chh-c--CCCCC-CCcEEEEEcCChhhhhc--c---ccccc
Q 048180 178 LQTLLETGKILLILDNMRKAF--------SL--------EEI-G--IPTLS-NSLRIIITSPSSSLCRQ--M---KCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~--------~~--------~~l-~--~~~~~-~gs~IivTTr~~~v~~~--~---~~~~~ 232 (824)
+...-.....+|++|+++... .. ..+ . ..... .+-.||.||-....... . .-+..
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~ 346 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRK 346 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEE
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCcccee
Confidence 443335788999999997431 00 011 0 11122 23356667755433211 1 12346
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
+.+...+.++-.++|..+..........++ ..+++.+.|.-
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 347 VEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred eecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 788888888888888877654322122233 45666777753
No 208
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.97 E-value=0.0011 Score=62.96 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+.+.|+|++|+||||+|+.+++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456689999999999999999988643
No 209
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.93 E-value=0.0084 Score=64.64 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.+-|-|+|.+|+|||++|+.+++.... ..+.+..+.-.. .. . .... ..+...+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~~~l~~--~~-------~-------g~~~---~~~~~~~~ 201 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISAASLTS--KY-------V-------GEGE---KLVRALFA 201 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECSCCC-----------------------CH---HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeHHHhhc--cc-------c-------chHH---HHHHHHHH
Confidence 467889999999999999999876321 123333222111 00 0 0001 11222222
Q ss_pred HHHcCCeEEEEEeCCCccc--------c-----cchh-----cCCC-CCCCcEEEEEcCChhhhh-cc--ccccccccCC
Q 048180 180 TLLETGKILLILDNMRKAF--------S-----LEEI-----GIPT-LSNSLRIIITSPSSSLCR-QM--KCRERFALNL 237 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~~~--------~-----~~~l-----~~~~-~~~gs~IivTTr~~~v~~-~~--~~~~~~~l~~ 237 (824)
..-..+..+|+||+++... . ...+ .... ....-.||.||....... .+ .....+.+..
T Consensus 202 ~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~ 281 (389)
T 3vfd_A 202 VARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSL 281 (389)
T ss_dssp HHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCC
T ss_pred HHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCC
Confidence 2223566899999997541 0 0011 0011 112235555665422211 11 1223577888
Q ss_pred CChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 048180 238 LTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLPL-AIITF 283 (824)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 283 (824)
.+.++-.+++...+...+.... .+....|++.+.|..- +|..+
T Consensus 282 p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 282 PNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 8999999998887754332122 2345678888888543 44444
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.92 E-value=0.0042 Score=64.26 Aligned_cols=128 Identities=9% Similarity=0.101 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhcc-ccceEEEEEeCC-cCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRS-HFNTFIWVEASY-EDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
.+..-++|+.|.||||+|+.+.+.... ... |.+ ..++..++ .....+ .+++++.+.....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~-~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p~--------------- 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEK-FPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSPE--------------- 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHT-SCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCCS---------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCch-hhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhccc---------------
Confidence 678899999999999999999875321 111 222 34444332 222222 2334333321100
Q ss_pred HHHHHcCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCC-hhhhhccccccccccCCCChHHHHHHHHHHh
Q 048180 178 LQTLLETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPS-SSLCRQMKCRERFALNLLTDEEAYLLLINEV 251 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~-~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (824)
.+++-++|+|+++... ..+.+. +..+...+.+|++|.+ ..+....... .++++++++++..+.+.+.+
T Consensus 80 -----~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 80 -----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred -----cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 1567789999998763 333331 1122345666665543 3444444444 89999999999999887775
No 211
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=0.0062 Score=64.38 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccc-eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFN-TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
++.+.++|+.|+||||+|+.+++..... .+. ...-+..+..... +.+++.+
T Consensus 46 ~~~~ll~Gp~G~GKTtla~~la~~l~~~---~~~~~~~~~~~~~~~~~-------------------------~~ir~~i 97 (340)
T 1sxj_C 46 LPHLLFYGPPGTGKTSTIVALAREIYGK---NYSNMVLELNASDDRGI-------------------------DVVRNQI 97 (340)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHHHHTT---SHHHHEEEECTTSCCSH-------------------------HHHHTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCC---CccceEEEEcCcccccH-------------------------HHHHHHH
Confidence 3338899999999999999999886431 111 1111222221111 1112111
Q ss_pred HHHH------cCCeEEEEEeCCCccc--ccchhc--CCCCCCCcEEEEEcCChh-hhhcc-ccccccccCCCChHHHHHH
Q 048180 179 QTLL------ETGKILLILDNMRKAF--SLEEIG--IPTLSNSLRIIITSPSSS-LCRQM-KCRERFALNLLTDEEAYLL 246 (824)
Q Consensus 179 ~~~l------~~kr~LlVlDdv~~~~--~~~~l~--~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~L 246 (824)
.... .+.+-++|+|+++... ..+.+. +.......++|++|.... +.... .....+++.+++.++..+.
T Consensus 98 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~ 177 (340)
T 1sxj_C 98 KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERR 177 (340)
T ss_dssp HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred HHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHH
Confidence 1111 1346789999987543 222221 111223456666664432 11111 1123678899999998888
Q ss_pred HHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHH
Q 048180 247 LINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAI 280 (824)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 280 (824)
+...+-..+...+ .+..+.|++.++|-+--+
T Consensus 178 l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 178 IANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 8776633221122 234677888999987644
No 212
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.016 Score=62.36 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=83.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+=|-++|++|.|||+||+++++..... .+.|..+.-.+ . ...+....++..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~-------fi~vs~s~L~s--------------k-----~vGesek~ir~l 294 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDAT-------FIRVIGSELVQ--------------K-----YVGEGARMVREL 294 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCE-------EEEEEGGGGCC--------------C-----SSSHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCC-------eEEEEhHHhhc--------------c-----cCCHHHHHHHHH
Confidence 456778899999999999999999986431 23333322110 0 011122334444
Q ss_pred HHHHHcCCeEEEEEeCCCcccc--------c--------ch-hc--CCCCCCCc-EEEEEcCChhhh-----hccccccc
Q 048180 178 LQTLLETGKILLILDNMRKAFS--------L--------EE-IG--IPTLSNSL-RIIITSPSSSLC-----RQMKCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~~--------~--------~~-l~--~~~~~~gs-~IivTTr~~~v~-----~~~~~~~~ 232 (824)
+...-.....+|++|+++.... . .. +. ......+. .||.||-..... +.-..+..
T Consensus 295 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~ 374 (467)
T 4b4t_H 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRK 374 (467)
T ss_dssp HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEE
T ss_pred HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEE
Confidence 4444457789999999874310 0 00 00 11222233 455566443321 11123457
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
+++...+.++-.++|..++........-++ ..|++.+.|.-
T Consensus 375 I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 375 VEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 888888888888899877754332122233 45677787753
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.012 Score=62.69 Aligned_cols=149 Identities=12% Similarity=0.072 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+=|-++|++|.|||.||+++++..... | +.+..+.-. .. ...+....++..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~----f---i~v~~s~l~--------------sk-----~vGesek~ir~l 267 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSAT----F---LRIVGSELI--------------QK-----YLGDGPRLCRQI 267 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCE----E---EEEESGGGC--------------CS-----SSSHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCC----E---EEEEHHHhh--------------hc-----cCchHHHHHHHH
Confidence 445778999999999999999999986432 2 233322211 00 011122333333
Q ss_pred HHHHHcCCeEEEEEeCCCcccc--------c----c----hh-c--CCCCCCCc-EEEEEcCChhhhhc--c---ccccc
Q 048180 178 LQTLLETGKILLILDNMRKAFS--------L----E----EI-G--IPTLSNSL-RIIITSPSSSLCRQ--M---KCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~~--------~----~----~l-~--~~~~~~gs-~IivTTr~~~v~~~--~---~~~~~ 232 (824)
+...-+....+|++|+++.... . . .+ . ......+. .||.||-..+.... . ..+..
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~ 347 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRK 347 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEE
T ss_pred HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEE
Confidence 4333346789999999864310 0 0 01 0 01122222 45556654443211 1 12346
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL 276 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 276 (824)
+.+...+.++-.++|..++.........++ ..|++.+.|.
T Consensus 348 I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 348 ILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 778888888888888877754332122233 4566677765
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.73 E-value=0.015 Score=58.65 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+-|.|+|++|.||||+|+.+++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 347899999999999999999875
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.02 Score=61.70 Aligned_cols=149 Identities=11% Similarity=0.145 Sum_probs=79.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+=|-++|++|.|||.||+++++..... .+.+..+.-.+ . ...+....++..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~-------f~~v~~s~l~~--------------~-----~vGese~~ir~l 266 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNAT-------FLKLAAPQLVQ--------------M-----YIGEGAKLVRDA 266 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCE-------EEEEEGGGGCS--------------S-----CSSHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCC-------EEEEehhhhhh--------------c-----ccchHHHHHHHH
Confidence 456778899999999999999999986431 23333322110 0 011112233333
Q ss_pred HHHHHcCCeEEEEEeCCCccc-------c-----cc----hh-c--CCCCCCCc-EEEEEcCChhhhhc--c---ccccc
Q 048180 178 LQTLLETGKILLILDNMRKAF-------S-----LE----EI-G--IPTLSNSL-RIIITSPSSSLCRQ--M---KCRER 232 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~-------~-----~~----~l-~--~~~~~~gs-~IivTTr~~~v~~~--~---~~~~~ 232 (824)
+...-.....+|++|+++... . .. .+ . ......+. .||.||........ . ..+..
T Consensus 267 F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~ 346 (434)
T 4b4t_M 267 FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRK 346 (434)
T ss_dssp HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEE
T ss_pred HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEE
Confidence 333334678999999986320 0 00 11 0 11122222 45556655433211 1 22346
Q ss_pred cccCCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC
Q 048180 233 FALNLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL 276 (824)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 276 (824)
+++...+.++-.++|..++........-++ ..|++.+.|.
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 347 IEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp EECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 778888888888888766543221122223 4567777775
No 216
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.59 E-value=0.0017 Score=66.59 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
+++-|+|++|+||||||.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 56789999999999999999886
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.59 E-value=0.013 Score=64.26 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=78.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
+-|.|+|++|.||||||+.+++..... | +.++.+.-... . .......++..+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~----f---~~is~~~~~~~----------~---------~g~~~~~~r~lf~~ 103 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVP----F---FHISGSDFVEL----------F---------VGVGAARVRDLFAQ 103 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCC----E---EEEEGGGTTTC----------C---------TTHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC----e---eeCCHHHHHHH----------H---------hcccHHHHHHHHHH
Confidence 347799999999999999999875321 2 23333221110 0 00111233444444
Q ss_pred HHcCCeEEEEEeCCCcccc----------------cchhc---CCCC-CCCcEEEEEcCChhhhh--cc---cccccccc
Q 048180 181 LLETGKILLILDNMRKAFS----------------LEEIG---IPTL-SNSLRIIITSPSSSLCR--QM---KCRERFAL 235 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~~----------------~~~l~---~~~~-~~gs~IivTTr~~~v~~--~~---~~~~~~~l 235 (824)
...+...+|+||+++.... ...+. ..+. ..+-.||.||....... .. .....+.+
T Consensus 104 A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp HHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 4457789999999965310 11110 0011 12346666666654322 11 12236777
Q ss_pred CCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 236 NLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
...+.++-.+++..++.......... ...+++.+.|..
T Consensus 184 ~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 184 DPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp CCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 87787777778877664332111112 234677787876
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.58 E-value=0.0089 Score=66.11 Aligned_cols=153 Identities=11% Similarity=0.153 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
..+-|-|+|.+|.|||++|+.+++.... ..+.+.. .+ +...+. ......+...+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn~------~~----l~~~~~---------g~~~~~~~~~f 290 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING------PE----IMSKLA---------GESESNLRKAF 290 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEEH------HH----HHTSCT---------THHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEEc------hH----hhhhhc---------chhHHHHHHHH
Confidence 3456889999999999999999876421 1223322 11 111110 11122334444
Q ss_pred HHHHcCCeEEEEEeCCCcccc-------------cchh-c--CCCCCC-CcEEEEEcCChh-hhhcc----ccccccccC
Q 048180 179 QTLLETGKILLILDNMRKAFS-------------LEEI-G--IPTLSN-SLRIIITSPSSS-LCRQM----KCRERFALN 236 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~-------------~~~l-~--~~~~~~-gs~IivTTr~~~-v~~~~----~~~~~~~l~ 236 (824)
.....++..+|+||+++.... ...+ . ...... +-+||.||.... +...+ .....+.+.
T Consensus 291 ~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~ 370 (489)
T 3hu3_A 291 EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370 (489)
T ss_dssp HHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECC
T ss_pred HHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeC
Confidence 444457789999999953210 0111 0 111122 335666665442 21111 223367888
Q ss_pred CCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCC-hHHHH
Q 048180 237 LLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGL-PLAII 281 (824)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~ 281 (824)
..+.++-.+++..++..........+ .++++.+.|. +-.+.
T Consensus 371 ~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 371 IPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLA 412 (489)
T ss_dssp CCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHH
Confidence 99999999999887754322122222 4456666664 43343
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.065 Score=57.72 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=45.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+=|-++|++|.|||+||+++++..... .+.|..++-.+ ....+....+++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~-------~~~v~~~~l~~-------------------~~~Ge~e~~ir~l 257 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAA-------FIRVNGSEFVH-------------------KYLGEGPRMVRDV 257 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCE-------EEEEEGGGTCC-------------------SSCSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eEEEecchhhc-------------------cccchhHHHHHHH
Confidence 455678899999999999999999986431 23333332111 0011122334444
Q ss_pred HHHHHcCCeEEEEEeCCCc
Q 048180 178 LQTLLETGKILLILDNMRK 196 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~ 196 (824)
+...-+....+|++|+++.
T Consensus 258 F~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp HHHHHHTCSEEEEEECTHH
T ss_pred HHHHHHcCCCeeechhhhh
Confidence 4444456789999999863
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.36 E-value=0.016 Score=56.64 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQ 150 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 150 (824)
-.++.|+|.+|+||||||+.+.. . . -..++|+.....++..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~-----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S-----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H-----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c-----CCcEEEEECCCCCCHHHHH
Confidence 46999999999999999999988 2 2 2357888877655665544
No 221
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.29 E-value=0.039 Score=60.91 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhhh-cccc-ce-EEEEEeCCcCCHHHHHH
Q 048180 75 TRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQY-RSHF-NT-FIWVEASYEDDLKELQI 151 (824)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~F-~~-~~wv~~s~~~~~~~~~~ 151 (824)
.|.+..+..++..+.. ....-+-++|.+|+|||++|+.+++...... ...+ +. .+.+..+
T Consensus 183 iGr~~~i~~l~~~l~r-------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSR-------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CCCHHHHHHHHHHHHC-------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred cCcHHHHHHHHHHHhc-------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 3445555555544422 1223456999999999999999999863210 0001 11 1122221
Q ss_pred HHHHhcccccCCCcchhhhHHHHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCc-EEEEEcCChhhhh-----
Q 048180 152 KIARKIDFVLSSDESVRDNAILLENALQTLLETGKILLILDNMRKAFSLEEIGIPTLSNSL-RIIITSPSSSLCR----- 225 (824)
Q Consensus 152 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs-~IivTTr~~~v~~----- 225 (824)
... ..........+...+ -+.+..+|++| -..+..+.+ .+....|. ++|.||.......
T Consensus 246 ---~~~------~g~~e~~~~~~~~~~---~~~~~~iLfiD--~~~~a~~~L-~~~L~~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ---TKY------RGEFEDRLKKVMDEI---RQAGNIILFID--AAIDASNIL-KPSLARGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ----------------CTTHHHHHHHH---HTCCCCEEEEC--C---------CCCTTSSSCEEEEECCTTTTHHHHTTC
T ss_pred ---ccc------cchHHHHHHHHHHHH---HhcCCeEEEEe--CchhHHHHH-HHhhcCCCEEEEecCCHHHHHHHhhcC
Confidence 000 000111122222222 23567899999 222222223 33333444 6666655443111
Q ss_pred -c-cccccccccCCCChHHHHHHHHHHhc
Q 048180 226 -Q-MKCRERFALNLLTDEEAYLLLINEVG 252 (824)
Q Consensus 226 -~-~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (824)
. ...-.++.+.+.+.++..+++...+-
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 0 01113688999999999999987653
No 222
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.23 E-value=0.0097 Score=55.81 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHhHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHV 120 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v 120 (824)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.23 E-value=0.018 Score=59.37 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHH--HHHHHHHHhcccccCCCcchhhhHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLK--ELQIKIARKIDFVLSSDESVRDNAILLE 175 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 175 (824)
....+|+|+|.+|+||||++..++...... + ..+.++.. +.+... +-+...++..+..........+....+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g--~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--G--KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAF 176 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHT--T--CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhc--C--CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 456899999999999999999999877542 1 12444443 223222 2233444444332211111112222233
Q ss_pred HHHHHHHcCCeEEEEEeCC
Q 048180 176 NALQTLLETGKILLILDNM 194 (824)
Q Consensus 176 ~~l~~~l~~kr~LlVlDdv 194 (824)
+.+...+..+.-++|+|-.
T Consensus 177 ~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEECC
Confidence 3444444455558888854
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.21 E-value=0.0034 Score=63.88 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
-+-|+|++|+|||++|+.+++...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 367999999999999999998753
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.016 Score=60.95 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-cchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD-ESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l 178 (824)
-+++.|+|.+|+||||||.++....... =..++|++....++.. .++.++...... .........+...+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~----gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM----GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4799999999999999999999876442 1247888877777654 344444322110 00011122233333
Q ss_pred HHHHc-CCeEEEEEeCCCcc
Q 048180 179 QTLLE-TGKILLILDNMRKA 197 (824)
Q Consensus 179 ~~~l~-~kr~LlVlDdv~~~ 197 (824)
...++ .+.-++|+|.+-..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 33333 45568999987543
No 226
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.15 E-value=0.012 Score=70.24 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=62.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhh-hcccc-c-eEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQ-YRSHF-N-TFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~F-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
.-+.++|.+|+||||+|+.+++..... ..... + ..+++..+.-.. +. ...... ...+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~--~~~g~~---~~~l~~~ 254 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GA--KYRGEF---EERLKAV 254 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CH---HHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cC--ccchHH---HHHHHHH
Confidence 346799999999999999999986431 00001 1 223332211100 00 000011 1222222
Q ss_pred HHHHHc-CCeEEEEEeCCCccc-------ccchh--cCCCCCCC-cEEEEEcCChhh-----hhcc-ccccccccCCCCh
Q 048180 178 LQTLLE-TGKILLILDNMRKAF-------SLEEI--GIPTLSNS-LRIIITSPSSSL-----CRQM-KCRERFALNLLTD 240 (824)
Q Consensus 178 l~~~l~-~kr~LlVlDdv~~~~-------~~~~l--~~~~~~~g-s~IivTTr~~~v-----~~~~-~~~~~~~l~~L~~ 240 (824)
+...-. +++.+|++|+++... .++.. ..+....| -.+|.||..... ...+ ..-..+.+.+++.
T Consensus 255 ~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~ 334 (854)
T 1qvr_A 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTV 334 (854)
T ss_dssp HHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCH
T ss_pred HHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCH
Confidence 322222 367999999997653 12211 01111123 355655543322 1111 1113588999999
Q ss_pred HHHHHHHHHHh
Q 048180 241 EEAYLLLINEV 251 (824)
Q Consensus 241 ~~~~~Lf~~~~ 251 (824)
++..+++....
T Consensus 335 ~e~~~iL~~~~ 345 (854)
T 1qvr_A 335 EETISILRGLK 345 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999886543
No 227
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.14 E-value=0.012 Score=61.05 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..-+-++|.+|+|||++|+.+++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999875
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.10 E-value=0.037 Score=65.33 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=69.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhh-cc-ccceEEEEE-eCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQY-RS-HFNTFIWVE-ASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~-~F~~~~wv~-~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
.-+-++|.+|+||||+|+.+++...... .. ...+.+|.. .+.- .. +. ...... ...+...
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------~~--~~--~~~g~~---e~~l~~~ 270 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------LA--GT--KYRGDF---EKRFKAL 270 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------C--CC--CCSSCH---HHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------hc--cc--cccchH---HHHHHHH
Confidence 4467999999999999999998764310 00 123333321 1100 00 00 001111 1223333
Q ss_pred HHHHHcCCeEEEEEeCCCccc--------c---cchhcCCCCCCC-cEEEEEcCChhhhhcc-------ccccccccCCC
Q 048180 178 LQTLLETGKILLILDNMRKAF--------S---LEEIGIPTLSNS-LRIIITSPSSSLCRQM-------KCRERFALNLL 238 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~--------~---~~~l~~~~~~~g-s~IivTTr~~~v~~~~-------~~~~~~~l~~L 238 (824)
+...-+.+..+|++||++... . .+.+ .+....| -++|.||......... ..-..+.+...
T Consensus 271 ~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L-~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p 349 (758)
T 1r6b_X 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLI-KPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEP 349 (758)
T ss_dssp HHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHH-SSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCC
T ss_pred HHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHH-HHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCC
Confidence 333323467999999997551 1 1122 2333333 4666666544322111 11125788999
Q ss_pred ChHHHHHHHHHHh
Q 048180 239 TDEEAYLLLINEV 251 (824)
Q Consensus 239 ~~~~~~~Lf~~~~ 251 (824)
+.++..+++...+
T Consensus 350 ~~~e~~~il~~l~ 362 (758)
T 1r6b_X 350 SIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999888886644
No 229
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.10 E-value=0.0079 Score=62.94 Aligned_cols=90 Identities=11% Similarity=0.074 Sum_probs=49.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhccc----ccCCCcchh-h----hH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDF----VLSSDESVR-D----NA 171 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~----~~~~~~~~~-~----~~ 171 (824)
..++|+|..|.|||||++.+.+..... ...+++ +++-+.+...... ++.+.+.. ...++.... . ..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~-~~~v~~-I~~lIGER~~Ev~---~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYN-HPDCVL-MVLLIDERPEEVT---EMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHH-CTTSEE-EEEEESSCHHHHH---HHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhc-CCCeeE-EEEEecCChHHHH---HHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 588999999999999999998876432 112433 3566665533221 22233210 111111111 1 11
Q ss_pred HHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 172 ILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 172 ~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
-.+.+++++ +++.+||++||+-..
T Consensus 250 lt~AEyfrd--~G~dVLil~DslTR~ 273 (422)
T 3ice_A 250 IEKAKRLVE--HKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHH--TSCEEEEEEECHHHH
T ss_pred HHHHHHHHh--cCCCEEEEEeCchHH
Confidence 122344443 489999999998543
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.04 E-value=0.0047 Score=63.71 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
...+.+.++|++|+|||+||+.+++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4457888999999999999999999863
No 231
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.01 E-value=0.057 Score=54.83 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=65.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQTLL 182 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l 182 (824)
+.++|++|.||||||+.++..... ..+++..+.-.+. ...+....+...++..-
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-------~~i~i~g~~l~~~-------------------~~~~~~~~i~~vf~~a~ 100 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-------NFISVKGPELLNM-------------------YVGESERAVRQVFQRAK 100 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-------EEEEEETTTTCSS-------------------TTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-------CEEEEEcHHHHhh-------------------hhhHHHHHHHHHHHHHH
Confidence 999999999999999999886422 2344432221100 00011112222222222
Q ss_pred cCCeEEEEEeCCCcccc---------cch----h-c-CCC--CCCCcEEEEEcCChhhhhcc-----ccccccccCCCCh
Q 048180 183 ETGKILLILDNMRKAFS---------LEE----I-G-IPT--LSNSLRIIITSPSSSLCRQM-----KCRERFALNLLTD 240 (824)
Q Consensus 183 ~~kr~LlVlDdv~~~~~---------~~~----l-~-~~~--~~~gs~IivTTr~~~v~~~~-----~~~~~~~l~~L~~ 240 (824)
.....++++|+++.... ... + . +.. .....-++.+|....+.... .-+..+.+...+.
T Consensus 101 ~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~ 180 (274)
T 2x8a_A 101 NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180 (274)
T ss_dssp HTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCH
T ss_pred hcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCH
Confidence 35678999999865310 000 0 0 000 11223455666665553211 2234667888888
Q ss_pred HHHHHHHHHHhc
Q 048180 241 EEAYLLLINEVG 252 (824)
Q Consensus 241 ~~~~~Lf~~~~~ 252 (824)
++-.++|..+..
T Consensus 181 ~~r~~il~~~~~ 192 (274)
T 2x8a_A 181 ADRLAILKTITK 192 (274)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888877653
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.96 E-value=0.03 Score=56.23 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+.|+|+.|.||||||+.+++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.95 E-value=0.047 Score=64.37 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCceEEEEEcCCCChHhHHHHHHHHHHHhh-hccc-cceEEEEEeCCcCCHHHHHH
Q 048180 74 LTRICRIIQQIISNAVDNDIRYYNQGAVVLGVCGASGVGKTEAGAHVYNRILNQ-YRSH-FNTFIWVEASYEDDLKELQI 151 (824)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~-F~~~~wv~~s~~~~~~~~~~ 151 (824)
.+|.+..++.++..+.. ....-+-++|.+|+|||++|+.+++..... .... .++.+ +.+.-
T Consensus 182 iiG~~~~i~~l~~~l~~-------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~--------- 244 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSR-------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM--------- 244 (758)
T ss_dssp CCCCHHHHHHHHHHHHC-------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC-----------
T ss_pred ccCchHHHHHHHHHHhC-------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc---------
Confidence 34455555555554422 122336799999999999999999986321 0000 11111 11111
Q ss_pred HHHHhcccccCCCcchhhhHHHHHHHHHHHHcCCeEEEEEeCCCcccccchhcCCCCCCCc-EEEEEcCChhhhh-----
Q 048180 152 KIARKIDFVLSSDESVRDNAILLENALQTLLETGKILLILDNMRKAFSLEEIGIPTLSNSL-RIIITSPSSSLCR----- 225 (824)
Q Consensus 152 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs-~IivTTr~~~v~~----- 225 (824)
+... ..........+ +......++.+|++| ...+..+.+ .+.-..|. ++|.||.......
T Consensus 245 ------g~~~--~G~~e~~l~~~---~~~~~~~~~~iLfiD--~~~~~~~~L-~~~l~~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ------GTKY--RGEFEDRLKKV---MDEIRQAGNIILFID--AAIDASNIL-KPSLARGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ----------------CTTHHHH---HHHHHTCCCCEEEEC--C---------CCCTTSSSCEEEEECCTTTTHHHHTTC
T ss_pred ------cccc--cchHHHHHHHH---HHHHHhcCCEEEEEc--CchhHHHHH-HHHHhcCCEEEEeCCChHHHHHHhhcc
Confidence 0000 00111122222 322334677899999 222222222 33333444 6666665444111
Q ss_pred -cc-ccccccccCCCChHHHHHHHHHHhc
Q 048180 226 -QM-KCRERFALNLLTDEEAYLLLINEVG 252 (824)
Q Consensus 226 -~~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (824)
.+ ..-..+.+...+.++..+++.....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 00 0113688999999999999986543
No 234
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.88 E-value=0.023 Score=60.01 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCc-chhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDE-SVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l 178 (824)
-+++.|.|.+|+||||||.++....... =..++|++....++... +..++.....-. ........+.+.+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4689999999999999999998875432 23688999887776542 344443211100 0001122333333
Q ss_pred HHHHc-CCeEEEEEeCCCc
Q 048180 179 QTLLE-TGKILLILDNMRK 196 (824)
Q Consensus 179 ~~~l~-~kr~LlVlDdv~~ 196 (824)
+...+ .+--+||+|.+-.
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 33322 4445899998743
No 235
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.86 E-value=0.0078 Score=62.41 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++.+||+|.|-|||||||.|..+.--...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 57799999999999999999998887654
No 236
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.86 E-value=0.027 Score=60.79 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...||.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999887654
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.86 E-value=0.021 Score=64.19 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
...++.++|++|+||||||+.++....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999998763
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.80 E-value=0.036 Score=55.01 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhc---cccceEEEEEeCCcCCHHHHHHHHHHhcccccC---------CCcch
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYR---SHFNTFIWVEASYEDDLKELQIKIARKIDFVLS---------SDESV 167 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 167 (824)
-.++.|+|.+|.||||||+.+....... . ..-..++|+.....+...++. ++++.++.... ...+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLP-IDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSC-GGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCc-hhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 3699999999999999999998753110 0 012467888877765555443 33444432210 00111
Q ss_pred hhhHHHHHHHHHHHHc-CCeEEEEEeCCCcc
Q 048180 168 RDNAILLENALQTLLE-TGKILLILDNMRKA 197 (824)
Q Consensus 168 ~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~ 197 (824)
.+. ..+...+.+.+. .+.-+||+|.+...
T Consensus 102 ~~~-~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQ-TQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHH-HHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHH-HHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 111 112223333333 46778999987543
No 239
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.78 E-value=0.031 Score=59.10 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-cchhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD-ESVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l 178 (824)
-+++-|+|.+|+||||||.++....... -..++|++....++... ++.++.+...- -........+.+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3588889999999999999998775432 23689999888776542 34444321100 00001223344444
Q ss_pred HHHHc-CCeEEEEEeCCCc
Q 048180 179 QTLLE-TGKILLILDNMRK 196 (824)
Q Consensus 179 ~~~l~-~kr~LlVlDdv~~ 196 (824)
....+ ++--+||+|.+-.
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 44443 3345899998743
No 240
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.78 E-value=0.031 Score=59.94 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=64.7
Q ss_pred ccCCCCccEEEcCCCCCcccCChhhhcCCCCCcEEEecCCCCccccc-cccCcccccEEecccccccccCC--CcccCCC
Q 048180 464 CPMFCKLTTLFLQGNPLDLQLDNDFFNSFPNLKILNLSDTSMGILPK-SLSSLKYLTVLLLQNCIYLTCLP--SLAELVE 540 (824)
Q Consensus 464 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~c~~~~~lp--~i~~L~~ 540 (824)
+..+.+|+.+.+..+ ...++...|..+..|+.+.+..+ +..+.. .+.++.+|+.+.+.. .++.++ .+.++.+
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccc
Confidence 344455555555443 33444444556666666666543 333332 344555666665543 244444 2556666
Q ss_pred ccEEeccCCCCcccCc-ccccCCCCcEEeccCccccccchhhhcCCCCCcEEEe
Q 048180 541 LMVLDVSGSGIAEFPD-GMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSM 593 (824)
Q Consensus 541 L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l 593 (824)
|+.+.+.++.++.++. .+.++.+|+.+.+..+ +..+....|.++++|+.+.+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 6666666555555543 3455566666665432 34444444555555555544
No 241
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.77 E-value=0.031 Score=58.86 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCc-chhhhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDE-SVRDNAILLENAL 178 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l 178 (824)
-+++.|+|.+|+||||||.++....... =..++|++....++.. .++.++.....-. .......++.+.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4689999999999999999998765432 2357899888777653 2444443221100 0001122233333
Q ss_pred HHHHc-CCeEEEEEeCCCc
Q 048180 179 QTLLE-TGKILLILDNMRK 196 (824)
Q Consensus 179 ~~~l~-~kr~LlVlDdv~~ 196 (824)
....+ .+.-+||+|.+-.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 33332 3456899998754
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.71 E-value=0.072 Score=55.26 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.2
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
....++|+|+|.+|+||||++..++.....
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999987754
No 243
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.69 E-value=0.052 Score=56.51 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeC-CcCCHHHHHHHHHHhcc
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEAS-YEDDLKELQIKIARKID 158 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~ 158 (824)
....+|+|+|+.|+||||+++.+....... + . .+.++... ......+.++...+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~-g-~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--G-F-SVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--T-C-CEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--C-C-EEEEEeecccccchHHHHHHHHHHcC
Confidence 457899999999999999999999876542 1 1 23333322 12234444555555555
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.67 E-value=0.028 Score=60.66 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+||.++|.+|+||||++..+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999987754
No 245
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.65 E-value=0.047 Score=55.59 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+.|+|+.|.||||||+.++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999999864
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.60 E-value=0.042 Score=56.05 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=53.2
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-----CcchhhhHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-----DESVRDNAILLEN 176 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 176 (824)
++-|+|.+|+||||||.++......+ ..=..++||+....++... +++++.+... ..+.++..-.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~--g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ--YPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH--CTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 68999999999999999988765431 0113679999888877642 5666644321 1111111011222
Q ss_pred HHHHHHcCCeEEEEEeCCCcc
Q 048180 177 ALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 177 ~l~~~l~~kr~LlVlDdv~~~ 197 (824)
.+...-+++.-+||+|-|-..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 221112356789999988654
No 247
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.58 E-value=0.089 Score=57.32 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=26.0
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-..-.||+|+|..|+|||||++.+......
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 345689999999999999999999987654
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.55 E-value=0.036 Score=57.91 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccc----cceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSH----FNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
-.++.|+|.+|+||||||.+++..... ... -..++|++....++..++.. +++.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~--~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQL--PPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS--CGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhc--ccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 468999999999999999999876321 100 23679999888877776654 345554
No 249
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.52 E-value=0.016 Score=60.11 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
...+.|+|..|+|||+||+.+++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999876
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.49 E-value=0.049 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...+|+|+|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999999987754
No 251
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.48 E-value=0.06 Score=62.71 Aligned_cols=150 Identities=12% Similarity=0.143 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENA 177 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 177 (824)
...+-|-++|++|.|||+||+++++.... + .+.|..+ + +... ...+....+++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~----~---~~~v~~~------~----l~sk---------~~gese~~lr~l 289 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGA----F---FFLINGP------E----IMSK---------LAGESESNLRKA 289 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTC----E---EEEEEHH------H----HHSS---------CTTHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCC----e---EEEEEhH------H----hhcc---------cchHHHHHHHHH
Confidence 45677899999999999999999987532 1 2333321 1 1111 111223445555
Q ss_pred HHHHHcCCeEEEEEeCCCccc--------ccc-----hhc---CCCCCCCc-EEEEEcCChhhh-hcc----cccccccc
Q 048180 178 LQTLLETGKILLILDNMRKAF--------SLE-----EIG---IPTLSNSL-RIIITSPSSSLC-RQM----KCRERFAL 235 (824)
Q Consensus 178 l~~~l~~kr~LlVlDdv~~~~--------~~~-----~l~---~~~~~~gs-~IivTTr~~~v~-~~~----~~~~~~~l 235 (824)
+....+....+|++|+++... +.. .+. ......+. .||.||...+.. ..+ .-...+++
T Consensus 290 F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i 369 (806)
T 3cf2_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (806)
T ss_dssp HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEEC
T ss_pred HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEec
Confidence 555556778999999987531 110 110 01111222 455565543321 111 12346778
Q ss_pred CCCChHHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHhCCCh
Q 048180 236 NLLTDEEAYLLLINEVGLAGKVLEGEIEFGLKNIAKKCGGLP 277 (824)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 277 (824)
...+.++=.++|..+..........++ ..|++++.|.-
T Consensus 370 ~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 370 GIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred CCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 888888888888766543221122222 45777787764
No 252
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.47 E-value=0.063 Score=58.18 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...++|.|+|.||+||||+|..+......
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999988754
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.39 E-value=0.058 Score=56.78 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhcc----ccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRS----HFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
.-.++.|+|.+|+||||||.+++..... .. .-..++|++....++..++.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~--~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQL--PGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTS--CBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc--ccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4479999999999999999999876311 11 124688999888777776554 344443
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.39 E-value=0.039 Score=57.66 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhh----------cccc--ceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQY----------RSHF--NTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
-.++-|+|.+|+||||||.+++......- .+.. ..++|++....++..++... ++.++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g 167 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAG 167 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 47999999999999999999987531100 0101 46889998888877766643 44444
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.31 E-value=0.12 Score=50.84 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=31.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIK 152 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 152 (824)
.+++|+|..|.|||||++.+....... =..++|+.... ...++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~----~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD----GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH----TCCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC----CCeEEEEEccc--CHHHHHHH
Confidence 689999999999999999999765432 12456665433 34444443
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.21 E-value=0.074 Score=54.54 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...+|+|+|.+|+||||++..+......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987653
No 257
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.20 E-value=0.075 Score=57.50 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=52.9
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhccc-------ccCCCcc-hhh---
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDF-------VLSSDES-VRD--- 169 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~-~~~--- 169 (824)
.++|+|..|+||||||..+......+ +-+.++++-+.+... ..+++.++...-.. ....+.. ...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~---~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE---HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH---TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc---cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 58899999999999999999876543 123456676666543 44555555432100 0011111 111
Q ss_pred -hHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 170 -NAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 170 -~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
..-.+.+++++ .+++++||++||+..
T Consensus 230 ~~~ltiAEyFrd-~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRD-EQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHH-HSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHH-hcCCcEEEEeccHHH
Confidence 11233444442 148999999999843
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.06 E-value=0.025 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
..-.+|+|+|..|.|||||++.+.....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999988765
No 259
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.06 E-value=0.075 Score=52.17 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhh-cc-ccceEEEEEeCCcCCH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQY-RS-HFNTFIWVEASYEDDL 146 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~-~F~~~~wv~~s~~~~~ 146 (824)
-.+++|+|+.|.|||||++.++......- .. .-...+|+.-...+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 37999999999999999999987532210 00 1234778876554443
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.03 E-value=0.076 Score=54.46 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+|+++|.+|+||||++..++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999987754
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.01 E-value=0.013 Score=54.69 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 262
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.96 E-value=0.073 Score=58.71 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~~ 124 (824)
|.|+|++|.||||||+.++...
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 263
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.95 E-value=0.072 Score=57.49 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=56.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHhcccc------c-----C-CCcch
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARKIDFV------L-----S-SDESV 167 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~------~-----~-~~~~~ 167 (824)
.-++|+|..|+|||+|++.+.+.... .+-+.++++-+.+... +.++.+++...-... . . .++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~---~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK---AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT---TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh---hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 46899999999999999999887532 2345677887777644 456777776542111 0 0 01111
Q ss_pred --h----hhHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 168 --R----DNAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 168 --~----~~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
. ...-.+.++++. -+++.+||++||+-
T Consensus 231 ~~r~~~~~~a~tiAEyfrd-~~G~dVLll~Dsit 263 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRD-QEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCcEEEEeccHH
Confidence 1 122333444542 13799999999984
No 264
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.95 E-value=0.061 Score=55.37 Aligned_cols=28 Identities=36% Similarity=0.338 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+..+|+|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999987654
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.91 E-value=0.015 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++|.|+|+.|.||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998875
No 266
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.89 E-value=0.1 Score=55.86 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhh--hccccceEEEEEeCCcCCHHHHHHHHHHhcc
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQ--YRSHFNTFIWVEASYEDDLKELQIKIARKID 158 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 158 (824)
-.++.|+|.+|+|||||+..++-..... ....-..++|++....+....+. .+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 4699999999999999999876432110 00012358888877766655543 3555554
No 267
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.88 E-value=0.033 Score=56.97 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=25.9
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.....+|+|+|..|.||||||+.+......
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999999887654
No 268
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.85 E-value=0.089 Score=57.03 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=40.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC-HHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD-LKELQIKIARK 156 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~ 156 (824)
.-++|+|..|+|||+|++.+.+.... .+-+.++++-+.+... +.++..++...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~---~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK---AHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT---TCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh---hCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 46899999999999999999887432 3457788888877654 55677777653
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.83 E-value=0.015 Score=54.71 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|.|+|++|.||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998764
No 270
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.72 E-value=0.013 Score=61.20 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=48.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHH-HHHHHHHHhcccccCCCcch-h----hhHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLK-ELQIKIARKIDFVLSSDESV-R----DNAILL 174 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~-~----~~~~~l 174 (824)
.-++|+|..|+|||+|++.+.+..... ...+.+ +++-+.+..... ++.+++...+-....+.... . ...-.+
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~-V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~alti 253 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIR-IILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEM 253 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEE-EEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEE-EEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999876432 112333 456665543211 11111110010011111111 1 112233
Q ss_pred HHHHHHHHcCCeEEEEEeCCCc
Q 048180 175 ENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 175 ~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
.+++++ +++.+||++||+-.
T Consensus 254 AEyfrd--~G~dVLil~DslTR 273 (427)
T 3l0o_A 254 AKRLVE--FNYDVVILLDSLTR 273 (427)
T ss_dssp HHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHH--cCCCEEEecccchH
Confidence 445553 58999999999843
No 271
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.68 E-value=0.17 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
...+.++|++|+||||+|+.+++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999999999764
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.63 E-value=0.019 Score=54.40 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 273
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.62 E-value=0.054 Score=63.87 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...+-++|++|+|||++|+.+++..
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999886
No 274
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.62 E-value=0.062 Score=50.83 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=58.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCC---cCCHHHHHHHHHH---hcccccCCCc-c---hhhh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASY---EDDLKELQIKIAR---KIDFVLSSDE-S---VRDN 170 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~---~l~~~~~~~~-~---~~~~ 170 (824)
..|-|++-.|.||||.|-...-+...+ + + .+.++.... ......++..+.- +.+....... . ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--G-~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--G-K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--T-C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--C-C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 455666666699999999998876542 1 2 344443322 2333444444310 0000000010 1 1122
Q ss_pred HHHHHHHHHHHHcCCeE-EEEEeCCCcccc-----cchhc--CCCCCCCcEEEEEcCCh
Q 048180 171 AILLENALQTLLETGKI-LLILDNMRKAFS-----LEEIG--IPTLSNSLRIIITSPSS 221 (824)
Q Consensus 171 ~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~-----~~~l~--~~~~~~gs~IivTTr~~ 221 (824)
.....+..++.+.+.+| |||||++-.... .+.+. +.......-||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 33334445555655554 999999844322 12220 11122345899999984
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.62 E-value=0.017 Score=55.01 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+|+|+|+.|.||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999764
No 276
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.60 E-value=0.04 Score=53.06 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
....+|+|+|..|.||||+++.+......
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44689999999999999999999887643
No 277
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.59 E-value=0.14 Score=52.51 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..-.+++|+|..|+||||+++.++.....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999987654
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.019 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.53 E-value=0.016 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|+|+.|.||||+|+.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998763
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.51 E-value=0.021 Score=53.80 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 281
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.50 E-value=0.14 Score=56.54 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+.++|+|+|.+|+||||++..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999887654
No 282
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.49 E-value=0.26 Score=51.75 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
....+|+|+|..|+||||+++.++.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 45689999999999999999999987754
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.47 E-value=0.026 Score=54.32 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
..-.+|+|+|+.|.||||+|+.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998764
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.44 E-value=0.025 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 285
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.39 E-value=0.024 Score=55.38 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
-.++.|+|..|.||||++..+.++...+ -..++.+..... .. ....|+..++...... .. .....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~----g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~-~~-~~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA----DVKYLVFKPKID--TR-SIRNIQSRTGTSLPSV-EV-ESAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT----TCCEEEEEECCC--GG-GCSSCCCCCCCSSCCE-EE-SSTHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc----CCEEEEEEeccC--ch-HHHHHHHhcCCCcccc-cc-CCHHHHHHHHH
Confidence 4689999999999999999998887542 112333332221 11 1223444444322111 11 12234555555
Q ss_pred HHHcCCeE-EEEEeCCCcc--cccchhcCCCCCCCcEEEEEcCCh
Q 048180 180 TLLETGKI-LLILDNMRKA--FSLEEIGIPTLSNSLRIIITSPSS 221 (824)
Q Consensus 180 ~~l~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~gs~IivTTr~~ 221 (824)
+.+.+.++ +||+|.+... ++.+.+.. ..+.|-.||+|-+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LAENGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HHHTTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HHhCCCeEEEEeccc
Confidence 44444444 9999998643 23233311 111366788888753
No 286
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.38 E-value=0.15 Score=53.60 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhh-cccc-ceEEEEEeCCcCCHHHHHHHHHHhc
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQY-RSHF-NTFIWVEASYEDDLKELQIKIARKI 157 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 157 (824)
.-.++.|+|..|.|||||++.++....... .+.. ..++|++....+...++ ..+++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 348999999999999999999987641100 0001 24588887665544433 3344433
No 287
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.37 E-value=0.028 Score=52.06 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..++++|+|..|.|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4679999999999999999999988754
No 288
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.34 E-value=0.019 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|.|.|+.|.||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 289
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.31 E-value=0.15 Score=54.79 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
...+|+|+|.+|+||||++..++.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999988754
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.30 E-value=0.03 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|.|.|+.|.||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.28 E-value=0.028 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999998764
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.27 E-value=0.15 Score=52.90 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARK 156 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 156 (824)
-.++-|.|.+|+||||+|.+++.....+ + ..++|++.- .+..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~--g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN--D--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT--T--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--C--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3688999999999999999998776442 2 467777655 5677777777654
No 293
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.25 E-value=0.026 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-.+|+|+|+.|.||||+|+.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999998764
No 294
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.24 E-value=0.027 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998765
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.19 E-value=0.023 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.++|.|+|++|.||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998764
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.17 E-value=0.029 Score=56.32 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
++|.|+|+.|.||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 579999999999999999998764
No 297
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.10 E-value=0.033 Score=53.63 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=23.7
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.....+|+|.|+.|.||||+|+.+.+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999999999999875
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.09 E-value=0.03 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...+|+|.|+.|.||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998865
No 299
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.08 E-value=0.029 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998865
No 300
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.07 E-value=0.031 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
+.+..+|+|+|+.|.||||+|+.+...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345689999999999999999999764
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.07 E-value=0.029 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
.+++|+|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 302
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.06 E-value=0.025 Score=53.07 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
++|.|+|++|.||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998764
No 303
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.06 E-value=0.65 Score=48.64 Aligned_cols=156 Identities=10% Similarity=0.004 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQ 179 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 179 (824)
.++.-++|..|.||++.|+.+.+.... ..|+....+.+....+..++...+..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------ 70 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAA---QGFEEHHTFSIDPNTDWNAIFSLCQA------------------------ 70 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHH---HTCCEEEEEECCTTCCHHHHHHHHHH------------------------
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHh---CCCCeeEEEEecCCCCHHHHHHHhcC------------------------
Confidence 468889999999999999999887643 12433222233333333333222110
Q ss_pred HHHcCCeEEEEEeCCCc-c--cccchhc--CCCCCCCcEEEEEcCC-------hhhhhcc-ccccccccCCCChHHHHHH
Q 048180 180 TLLETGKILLILDNMRK-A--FSLEEIG--IPTLSNSLRIIITSPS-------SSLCRQM-KCRERFALNLLTDEEAYLL 246 (824)
Q Consensus 180 ~~l~~kr~LlVlDdv~~-~--~~~~~l~--~~~~~~gs~IivTTr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~L 246 (824)
.-+-+++-++|+|+++. . ..++.+. +..+..++.+|++|.. ..+.... .....++..+++.++....
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 11226677888999866 3 3445442 2223346666655432 2233322 2335788899999988887
Q ss_pred HHHHhcCcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 048180 247 LINEVGLAGKVLEGEIEFGLKNIAKKCGGLPLAIITFAK 285 (824)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~ 285 (824)
..+.+-..+...+ .+....+++.++|-+.++...-.
T Consensus 151 l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 151 VAARAKQLNLELD---DAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp HHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHHHH
Confidence 7776643331111 24567788899998877665433
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.00 E-value=0.034 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|.|.|+.|.||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.98 E-value=0.028 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.+++|+|+.|.|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999875
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.94 E-value=0.036 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
...+|+|+|+.|.||||+|+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999775
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.94 E-value=0.065 Score=54.80 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
....+|.|.|++|.||||+|+.+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999775
No 308
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.93 E-value=0.036 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|.|.|+.|.||||+|+.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998764
No 309
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.93 E-value=0.038 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+.+||.|.|++|.||||.|+.+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998864
No 310
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.92 E-value=1 Score=46.74 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=37.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhc
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKI 157 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 157 (824)
.++.|.|.+|+||||+|..++...... =..++|++. ..+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~----g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND----DRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT----TCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 688899999999999999998876541 125666655 456777877776553
No 311
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.90 E-value=0.14 Score=60.32 Aligned_cols=128 Identities=11% Similarity=0.142 Sum_probs=67.2
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENAL 178 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 178 (824)
....|.|+|.+|+||||||+.+++.... .| +.+..+ + +.. . ...+....+...+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~----~~---i~v~~~------~----l~~----~-----~~g~~~~~l~~vf 290 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGA----FF---FLINGP------E----IMS----K-----LAGESESNLRKAF 290 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTC----EE---EEEEHH------H----HSS----S-----STTHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCC----cE---EEEEch------H----hhh----h-----hhhhHHHHHHHHH
Confidence 4467999999999999999999876422 12 333221 1 100 0 0111123334444
Q ss_pred HHHHcCCeEEEEEeCCCcccc-------------cchh---cCCCCCCC-cEEEEEcCChhhh-hcc----ccccccccC
Q 048180 179 QTLLETGKILLILDNMRKAFS-------------LEEI---GIPTLSNS-LRIIITSPSSSLC-RQM----KCRERFALN 236 (824)
Q Consensus 179 ~~~l~~kr~LlVlDdv~~~~~-------------~~~l---~~~~~~~g-s~IivTTr~~~v~-~~~----~~~~~~~l~ 236 (824)
+........++++|+++.... ...+ .-...... -.||.||....-. ..+ .....+.+.
T Consensus 291 ~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~ 370 (806)
T 1ypw_A 291 EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370 (806)
T ss_dssp HHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCC
T ss_pred HHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccC
Confidence 444456778999999853311 0111 01111122 3555555543221 111 112356777
Q ss_pred CCChHHHHHHHHHHhc
Q 048180 237 LLTDEEAYLLLINEVG 252 (824)
Q Consensus 237 ~L~~~~~~~Lf~~~~~ 252 (824)
..+.++-.+++...+.
T Consensus 371 ~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 371 IPDATGRLEILQIHTK 386 (806)
T ss_dssp CCCHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7888888888876654
No 312
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.89 E-value=0.029 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
.+|+|+|+.|.||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.88 E-value=0.039 Score=52.32 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.-.+|.|+|++|.||||+|+.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999988754
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.88 E-value=0.027 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
|.|.|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999997763
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.88 E-value=0.034 Score=53.92 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
...+|+|+|..|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999988654
No 316
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.87 E-value=0.027 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|.|+|++|.||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998864
No 317
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.86 E-value=0.087 Score=46.55 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=41.2
Q ss_pred EEeccCCCCc--ccCcccccCCCCcEEeccCccccccchhhhcCCCCCcEEEeecCcc
Q 048180 543 VLDVSGSGIA--EFPDGMNHLTKLLFLNLSRTRVRNFPLHLVTSLHNLQEFSMIGCDL 598 (824)
Q Consensus 543 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~L~~L~~L~l~~~~l 598 (824)
+++-++.+++ .+|..+- .+|++|++++|.+..++.+.|..+++|++|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666777777 7776432 4688888888888888888788888888888888764
No 318
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.86 E-value=0.035 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.++|+|+.|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988754
No 319
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.82 E-value=0.026 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVY 121 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~ 121 (824)
.-.+++|+|+.|.|||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 44799999999999999999643
No 320
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.82 E-value=0.035 Score=54.56 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|+|+.|.||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998764
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.77 E-value=0.036 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-.+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998754
No 322
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.76 E-value=0.027 Score=53.47 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
++++|+|+.|.|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999987653
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.76 E-value=0.04 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|.|+.|.||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 324
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.73 E-value=0.037 Score=53.04 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|.|+.|.||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998864
No 325
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.72 E-value=0.029 Score=54.15 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..++|.|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.69 E-value=0.039 Score=55.06 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|+|+|+.|.||||+++.+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999998765
No 327
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.69 E-value=0.034 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+|+|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999997653
No 328
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.68 E-value=0.091 Score=56.36 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=51.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccc----eEEEEEeCCcC-CHHHHHHHHHHhccc-------ccCCCc-chh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFN----TFIWVEASYED-DLKELQIKIARKIDF-------VLSSDE-SVR 168 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~-~~~ 168 (824)
-++|+|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++..++...=.. ...+.. ...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~----~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV----LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC----SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh----ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 3679999999999999998886422 123 56667666553 345666665442101 111111 111
Q ss_pred hhHHHHHHHHHHHHc---CCeEEEEEeCCC
Q 048180 169 DNAILLENALQTLLE---TGKILLILDNMR 195 (824)
Q Consensus 169 ~~~~~l~~~l~~~l~---~kr~LlVlDdv~ 195 (824)
.......-.+.++++ ++.+||++||+-
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 112222223344443 789999999984
No 329
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.67 E-value=0.071 Score=55.47 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHhh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILNQ 127 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 127 (824)
.....|.|+|+.|.||||+|+.++......
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456679999999999999999999877543
No 330
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.65 E-value=0.033 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
++|.|.|+.|.||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998864
No 331
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.62 E-value=0.041 Score=53.23 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
....+|+|+|+.|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44579999999999999999998654
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.60 E-value=0.052 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|+|.|+.|.||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 333
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.58 E-value=0.062 Score=58.21 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+.++|+|+|.+|+||||+|..+......
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34679999999999999999999887654
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.56 E-value=0.044 Score=53.07 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+|.|.|+.|.||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999987643
No 335
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.51 E-value=0.31 Score=47.90 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEE
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVE 139 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~ 139 (824)
-.+|.|.|+.|.||||+++.+.+.... .++...+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~---~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ---NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH---TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---cCCCeeeeec
Confidence 368999999999999999999998754 2355344443
No 336
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.50 E-value=0.045 Score=54.83 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....+|+|.|+.|.||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998864
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.46 E-value=0.046 Score=55.06 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
..+|.|+|++|.||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.45 E-value=0.05 Score=52.29 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...+|.|+|+.|.||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998764
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.41 E-value=0.047 Score=53.36 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...|.|.|+.|.||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.40 E-value=0.042 Score=53.08 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.40 E-value=0.048 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.|.|.|+.|.||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998864
No 342
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.39 E-value=0.034 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
++++|+|+.|.|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998764
No 343
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.37 E-value=0.05 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.+|+|+|+.|.||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999999775
No 344
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.34 E-value=0.037 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|.|.|+.|.||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999997764
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.33 E-value=0.047 Score=52.05 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998764
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.33 E-value=0.048 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
+|+|.|+.|.||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 347
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.31 E-value=0.3 Score=47.18 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+|.|.|+.|.||||+++.+.+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999988754
No 348
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.22 E-value=0.14 Score=48.80 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 349
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.17 E-value=0.047 Score=49.37 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-|-|+|..|+|||++|+.+++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 35699999999999999998753
No 350
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.14 E-value=0.053 Score=56.05 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
....+|+|+|..|.|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45689999999999999999999887653
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.12 E-value=0.062 Score=52.17 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+|+|.|+.|.||||+|+.+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988654
No 352
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.11 E-value=0.056 Score=52.38 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+|+|.|+.|.||||+|+.+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 353
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.11 E-value=0.031 Score=58.93 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=60.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCCcchhhhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSDESVRDNAILLENALQT 180 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 180 (824)
.+|+|+|+.|.||||+.+.+....... -..++ +++.++.... ..... ....+...........+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~----~~~~i-~t~ed~~e~~------~~~~~-~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT----KYHHI-LTIEDPIEFV------HESKK-CLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH----CCCEE-EEEESSCCSC------CCCSS-SEEEEEEBTTTBSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC----CCcEE-EEccCcHHhh------hhccc-cceeeeeeccccCCHHHHHHH
Confidence 499999999999999999998876442 11222 2222221100 00000 000000000000123345666
Q ss_pred HHcCCeEEEEEeCCCcccccchhcCCCCCCCcEEEEEcCChhhh
Q 048180 181 LLETGKILLILDNMRKAFSLEEIGIPTLSNSLRIIITSPSSSLC 224 (824)
Q Consensus 181 ~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~gs~IivTTr~~~v~ 224 (824)
.|..+.=+|++|.+.+.+.++.+.. ....|.-|++||-....+
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~-~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALT-AAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHH-HHHTTCEEEEEESCSSHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHH-HHhcCCEEEEEEccChHH
Confidence 7778899999999987665554311 122465688888776554
No 354
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.09 E-value=0.049 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+++|+|+.|.|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3699999999999999999998754
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.05 E-value=0.058 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34699999999999999999999875
No 356
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.02 E-value=0.13 Score=55.05 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=50.5
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhh--hc----cccc-eEEEEEeCCcC-CHHHHHHHHHHhccc-------ccCCCcc
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQ--YR----SHFN-TFIWVEASYED-DLKELQIKIARKIDF-------VLSSDES 166 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~--~~----~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~ 166 (824)
-++|+|..|+|||+|+.++.+..... .. ++=+ .++++-+.+.. .+.++..++...=.. ...+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 46799999999999999998764220 00 0111 56666666553 345566655442100 1111111
Q ss_pred -hhhhHHHHHHHHHHHHc---CCeEEEEEeCCC
Q 048180 167 -VRDNAILLENALQTLLE---TGKILLILDNMR 195 (824)
Q Consensus 167 -~~~~~~~l~~~l~~~l~---~kr~LlVlDdv~ 195 (824)
.........-.+.++++ ++.+||++||+-
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11112222223344443 789999999984
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.00 E-value=0.053 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+|+|+|+.|.||||+++.+....
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4699999999999999999998764
No 358
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.99 E-value=0.034 Score=54.05 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+|+|.|..|.||||+|+.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999887643
No 359
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.98 E-value=0.097 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....+|.|+|++|.||||+|+.+....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998764
No 360
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.96 E-value=0.061 Score=53.58 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..-.+|+|.|..|.|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998865
No 361
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.93 E-value=0.52 Score=45.48 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=34.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIAR 155 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 155 (824)
.+|.|-|..|.||||+++.+.+..... .+..+++..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~---~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL---GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 589999999999999999999987652 3433343333232223445555554
No 362
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.86 E-value=0.046 Score=53.40 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 363
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.85 E-value=0.049 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++++|+|..|.|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999887654
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.84 E-value=0.058 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998753
No 365
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.78 E-value=0.073 Score=51.61 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.-.+|.|+|+.|.||||+|+.+.....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999988765
No 366
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=92.77 E-value=0.011 Score=50.99 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=16.2
Q ss_pred ChhhhchhhhHHhhhccCC
Q 048180 1 MQDAYKTLDMIRDCCNVET 19 (824)
Q Consensus 1 ~k~~~~~~ddi~d~~~~~~ 19 (824)
+||++||+||++|.|.++.
T Consensus 64 vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 64 VRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5899999999999996544
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.77 E-value=0.069 Score=55.21 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=24.6
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.....+|||.|..|.||||+|+.+..-..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34577999999999999999999877653
No 368
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.75 E-value=0.066 Score=52.09 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.74 E-value=0.059 Score=52.73 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...|.|.|+.|.||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998864
No 370
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.74 E-value=0.059 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+++|+|..|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 371
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.67 E-value=0.066 Score=54.56 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVY 121 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~ 121 (824)
....+|+|.|+.|.||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999997
No 372
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.63 E-value=0.056 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|+|+.|.||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998865
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.63 E-value=0.081 Score=49.67 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
-.+|+|+|+.|.||||+|+.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988753
No 374
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.60 E-value=0.18 Score=54.81 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=51.0
Q ss_pred eEEEEEcCCCChHhHHHH-HHHHHHHhhhccccce-EEEEEeCCcCC-HHHHHHHHHHhccc-------ccCCCcc-hhh
Q 048180 101 VVLGVCGASGVGKTEAGA-HVYNRILNQYRSHFNT-FIWVEASYEDD-LKELQIKIARKIDF-------VLSSDES-VRD 169 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~-~~~ 169 (824)
.-++|+|..|+|||+||. .+.+.. .-+. ++++-+.+... +.++.+++...=.. ...++.. ...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~------~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK------GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT------TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh------cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 457899999999999964 666642 1443 46777776544 45666666542111 1111111 111
Q ss_pred ----hHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 170 ----NAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 170 ----~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
..-.+.++++. +||.+||++||+-
T Consensus 250 ~a~~~a~tiAEyfrd--~G~dVLli~DslT 277 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAY--SGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHT--TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEeccHH
Confidence 12234445543 4899999999984
No 375
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.54 E-value=0.083 Score=52.53 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....+|.|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998764
No 376
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.52 E-value=0.17 Score=54.55 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=52.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHHhccc-------ccCCCc-chhh--
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIARKIDF-------VLSSDE-SVRD-- 169 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~-~~~~-- 169 (824)
.-++|+|..|+|||+|+.++++......++.=+.++++-+.+.. .+.++..++...=.. ...+.. ....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 34678999999999999999887532101111356666666554 355666666543111 011111 1111
Q ss_pred --hHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 170 --NAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 170 --~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
..-.+.++++. -+++.+|+++||+-
T Consensus 233 ~~~a~tiAEyfrd-d~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAY-EHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHH-HHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHH-hcCCeEEEEEeCHH
Confidence 12223333431 13799999999973
No 377
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.49 E-value=0.081 Score=51.80 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....+|.|+|.+|+|||||+..+....
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998774
No 378
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.43 E-value=0.085 Score=49.26 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..++++|+|..|+|||||+..+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3679999999999999999999987643
No 379
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.41 E-value=0.081 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999965
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.38 E-value=0.069 Score=51.32 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|.|+.|.||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999997754
No 381
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.38 E-value=0.076 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998763
No 382
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.38 E-value=0.069 Score=52.07 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4699999999999999999998764
No 383
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.37 E-value=0.39 Score=45.75 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=32.7
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIAR 155 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 155 (824)
.|+|=|.-|+||||.++.+++....+ -..+++..-.......+.+++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~----g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR----GKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----CCcEEEEECCCCCcHHHHHHHHhh
Confidence 47788999999999999999988653 223444443333334445555443
No 384
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.35 E-value=0.071 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..|.|.|+.|.||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998865
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.35 E-value=0.23 Score=50.98 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=34.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARK 156 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 156 (824)
-.+++|+|.+|+|||||++.++...... .+ ..++|+.... ...++...+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G--~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA-MG--KKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT-SC--CCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-cC--CeEEEEeCcC--CHHHHHHHHHHH
Confidence 3699999999999999999999876542 11 1455665432 445555555443
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.32 E-value=0.076 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 387
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.23 E-value=0.29 Score=47.56 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..-.+|.|.|+.|.||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999998754
No 388
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.22 E-value=0.085 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+|+|.|+.|.||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998764
No 389
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.19 E-value=0.087 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+|+|.|+.|.||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 390
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.16 E-value=0.33 Score=52.66 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=50.8
Q ss_pred eEEEEEcCCCChHhHHHH-HHHHHHHhhhccccc-eEEEEEeCCcCC-HHHHHHHHHHhcccc-------cCCCcc-hhh
Q 048180 101 VVLGVCGASGVGKTEAGA-HVYNRILNQYRSHFN-TFIWVEASYEDD-LKELQIKIARKIDFV-------LSSDES-VRD 169 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~-~~~ 169 (824)
.-++|+|..|+|||+||. .+.+.. .-+ .++++-+.+... +.++.+++...=... ..++.. ...
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~------~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK------GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG------SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh------cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 457899999999999964 666642 144 346777776544 456666665421111 111111 111
Q ss_pred ----hHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 170 ----NAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 170 ----~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
..-.+.++++. +||.+||++||+-
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLl~~Dslt 264 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMY--KGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHT--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 12234455543 4899999999984
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.09 E-value=0.078 Score=52.49 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.. .+++|+|+.|.|||||.+.++.-
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 356 89999999999999999999754
No 392
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.04 E-value=0.26 Score=48.08 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-.+|.|-|+.|.||||+++.+.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999998764
No 393
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.02 E-value=0.074 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|+.|.|||||++.+...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 379999999999999999999853
No 394
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.95 E-value=0.065 Score=54.81 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
+..+|+|.|..|.||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988653
No 395
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.93 E-value=0.099 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+|.|.|++|.||||.|+.+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998864
No 396
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.92 E-value=0.098 Score=54.09 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
....+|+|+|..|.|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999999987653
No 397
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.91 E-value=0.1 Score=50.92 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+.++|+|+|.+|+|||||+..+....
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998775
No 398
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.88 E-value=0.057 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHH-HHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVY-NRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 124 (824)
-.+++|+|+.|.|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 653
No 399
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.85 E-value=0.57 Score=51.33 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=53.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCH-HHHHHHHHH----hcccc--------cC-CCcc
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDL-KELQIKIAR----KIDFV--------LS-SDES 166 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~~i~~----~l~~~--------~~-~~~~ 166 (824)
.-++|+|..|+|||+|++++.+.. +-+.++++-+.+.... .+++.++-+ ..+.. .. .+..
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~------~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p 301 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS------DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMP 301 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS------SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSC
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc------CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCC
Confidence 468999999999999999986642 2457888888877664 455555432 11100 00 0111
Q ss_pred hh------hhHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 167 VR------DNAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 167 ~~------~~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
.. ...-.+.+++++ +++.+||++||+-
T Consensus 302 ~~~r~~~~~~a~tiAEyfrd--~G~dVLl~~Dslt 334 (588)
T 3mfy_A 302 VAAREASIYTGITIAEYFRD--MGYDVALMADSTS 334 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCEEEeecchH
Confidence 11 112334455553 4899999999985
No 400
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.85 E-value=0.2 Score=47.98 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=22.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.+|+|.|+.|.||||+|+.+.....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998753
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.79 E-value=0.1 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.75 E-value=0.1 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.|.|.|+.|.||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 403
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.73 E-value=0.59 Score=50.80 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARK 156 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 156 (824)
-.++-|.|.+|+||||+|.+++.....+ =..++|++.- .+..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEECC--CCHHHHHHHHHHH
Confidence 4689999999999999999999886542 1256666544 3445566665543
No 404
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.71 E-value=0.079 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+++|+|+.|.|||||++.++.- ..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 48999999999999999999876 44
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.67 E-value=0.11 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....|.|.|+.|.||||+|+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998875
No 406
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.67 E-value=0.1 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
++|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 407
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.65 E-value=0.22 Score=51.33 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=29.8
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeC
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEAS 141 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s 141 (824)
....++|+|+|-||+||||+|..++.....+ + . .++-|...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G-~-~VlliD~D 78 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--G-K-RVLQIGCD 78 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--T-C-CEEEEEES
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--C-C-eEEEEeCC
Confidence 3467899999999999999999999887652 1 1 34555544
No 408
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.57 E-value=0.4 Score=50.40 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.+..+|+|+|.+|+|||||...+......
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 34789999999999999999999876543
No 409
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.56 E-value=0.1 Score=49.57 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCccEEeccCCCCc-----ccCcccccCCCCcEEeccCcccccc----chhhhcCCCCCcEEEeecCccccccccccchh
Q 048180 539 VELMVLDVSGSGIA-----EFPDGMNHLTKLLFLNLSRTRVRNF----PLHLVTSLHNLQEFSMIGCDLLCLPRSLMQED 609 (824)
Q Consensus 539 ~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~----~~~~l~~L~~L~~L~l~~~~l~~~~~~~~~~~ 609 (824)
..|+.|+|++|.+. .+-..+..=+.|++|+++.|.+..- ....+..-+.|++|++++|.... ....+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~----ig~~g 145 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV----LGNQV 145 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC----CCHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcC----cCHHH
Confidence 34556666666554 2233344446677777777776221 01224455668888887542101 11112
Q ss_pred hhhchHhhhcCCCccEEEEEecCc
Q 048180 610 YAAFIEDVRKLRNLNVFDFTFVSL 633 (824)
Q Consensus 610 ~~~~~~~l~~L~~L~~L~l~~~~~ 633 (824)
...+.+.+..-+.|..|+++.+..
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 223445666667788888776543
No 410
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.53 E-value=0.11 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-+-++|.+|+|||+||+.+.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 57799999999999999998864
No 411
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.46 E-value=0.22 Score=52.56 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.6
Q ss_pred cCCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 97 NQGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 97 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
..+..+|+|+|.+|+|||||+..+......
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999877643
No 412
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.45 E-value=0.13 Score=51.76 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
....++.+.|.||+||||++..+.....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3468899999999999999999987654
No 413
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.44 E-value=0.66 Score=51.57 Aligned_cols=52 Identities=10% Similarity=-0.112 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARK 156 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 156 (824)
-.++-|.|.+|+||||+|.+++.....+ +=..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 4688999999999999999998876431 112567776544 567777777654
No 414
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.43 E-value=0.2 Score=54.50 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=51.1
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhhhccccc-eEEEEEeCCcCC-HHHHHHHHHHhccc-------ccCCC-cch--
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQYRSHFN-TFIWVEASYEDD-LKELQIKIARKIDF-------VLSSD-ESV-- 167 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~-~~~-- 167 (824)
.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+... +.++.+++...=.. ...++ ...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~------~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ------GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC------TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh------cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 45689999999999996 4666642 134 356777776544 44555555442111 01111 111
Q ss_pred --hhhHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 168 --RDNAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 168 --~~~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
....-.+.++++. +||.+||++||+-
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1123444556654 4899999999974
No 415
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.43 E-value=0.083 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998754
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.42 E-value=0.094 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.+++|+|+.|.|||||.+.+..-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34469999999999999999998654
No 417
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.38 E-value=0.61 Score=51.86 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
....+|.++|++|.||||+|+.+......
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999887643
No 418
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.35 E-value=0.48 Score=56.48 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
...+.|+|+.|+|||++|+.+.+...
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 419
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.32 E-value=0.54 Score=51.14 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=52.4
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhh--hccccc-eEEEEEeCCcCC-HHHHHHHHHHhccc-------ccCCCcc-h
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQ--YRSHFN-TFIWVEASYEDD-LKELQIKIARKIDF-------VLSSDES-V 167 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~--~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~-~ 167 (824)
.-++|+|..|+|||+|| ..+.+..... -.++-+ .++++-+.+... +.++.+++...=.. ...++.. .
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 35789999999999995 5666664310 001234 367777776644 45666666542111 0111111 1
Q ss_pred hh----hHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 168 RD----NAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 168 ~~----~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
.. ..-.+.++++. ++|.+||++||+-
T Consensus 243 r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 272 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRD--NGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHT--TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHH--cCCcEEEEEcCHH
Confidence 11 12234445543 4899999999984
No 420
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.21 E-value=0.34 Score=61.68 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCC-----CcchhhhHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSS-----DESVRDNAIL 173 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~ 173 (824)
.-++|-|+|++|+||||||.++......+ =..++|+++.+.++... ++.++.+... ....+ .
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~----G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E----~ 1492 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGE----Q 1492 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHH----H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHH----H
Confidence 45799999999999999999998875431 23578888888877666 3444422111 11111 2
Q ss_pred HHHHHHHHH-cCCeEEEEEeCCC
Q 048180 174 LENALQTLL-ETGKILLILDNMR 195 (824)
Q Consensus 174 l~~~l~~~l-~~kr~LlVlDdv~ 195 (824)
..+.+++.. +.+--+||+|.+.
T Consensus 1493 ~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1493 ALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHHHHhcCCCCEEEEcChh
Confidence 223333332 2556799999985
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.17 E-value=0.15 Score=52.02 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..++|.|+|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999876
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.10 E-value=0.12 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
++|.|+|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999875
No 423
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.08 E-value=0.5 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
+.|+|-|..|+||||+++.+++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999874
No 424
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.01 E-value=0.41 Score=52.66 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=34.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKI 153 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 153 (824)
.-++|+|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~~------~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKWS------DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS------SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CEEeeecCCCccHHHHHHHHHhcc------CCCEEEEEEecccHHHHHHHHHHH
Confidence 478999999999999999987752 24567888777653 345555554
No 425
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.99 E-value=0.098 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997643
No 426
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.99 E-value=0.11 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|..|.|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 427
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.98 E-value=0.12 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567999999999999999998875
No 428
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.92 E-value=0.099 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.+++|+|+.|.|||||.+.+..-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34479999999999999999998754
No 429
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.89 E-value=0.35 Score=42.54 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=6.3
Q ss_pred cccCCCccEEeccCC
Q 048180 535 LAELVELMVLDVSGS 549 (824)
Q Consensus 535 i~~L~~L~~L~l~~~ 549 (824)
+..+++|++|+|++|
T Consensus 51 f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 51 LDALPALRTAHLGAN 65 (130)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhhccccCEEEecCC
Confidence 334444444444443
No 430
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.87 E-value=0.11 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
.-.+++|+|+.|.|||||++.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999865
No 431
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.84 E-value=0.24 Score=48.95 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=32.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKI 153 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 153 (824)
.++.|+|.+|+||||||.+++...... =..++|++... ...++...+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSS--CHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccC--CHHHHHHHH
Confidence 689999999999999999887765431 12567776544 344444433
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.82 E-value=0.16 Score=50.23 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
....+|+|+|+.|.||||+++.+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
No 433
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.77 E-value=0.12 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.+++|+|..|.|||||.+.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34469999999999999999999774
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.76 E-value=0.11 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|+.|.|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998754
No 435
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.65 E-value=0.11 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997653
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.64 E-value=0.15 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999875
No 437
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.63 E-value=0.23 Score=52.45 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
+++++|+|+|.+|+|||||...+...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 46788999999999999999998764
No 438
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.63 E-value=0.11 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
+.-.+++|+|+.|.|||||.+.++.-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 34479999999999999999998754
No 439
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.62 E-value=0.25 Score=49.51 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-.+++|+|+.|.|||||++.+......
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 369999999999999999999886543
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.59 E-value=0.11 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|+.|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999998754
No 441
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.59 E-value=0.095 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|+.|.|||||.+.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998754
No 442
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.59 E-value=0.12 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.+++|+|..|.|||||.+.++.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34479999999999999999999753
No 443
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.54 E-value=0.12 Score=49.11 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
-..+.|+|++|.||||+|..+++....
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999987643
No 444
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.53 E-value=0.12 Score=51.92 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.-.+++|+|+.|.|||||++.+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3469999999999999999999754
No 445
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.48 E-value=0.12 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|..|.|||||.+.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998654
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.46 E-value=0.17 Score=49.66 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.-.+|.|.|+.|.||||+++.+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998763
No 447
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.44 E-value=0.82 Score=49.96 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIAR 155 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 155 (824)
.-.++.|.|.+|+||||||..++...... . =..++|++... +..++...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~--g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-T--NENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-S--SCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-C--CCcEEEEECCC--CHHHHHHHHHH
Confidence 34689999999999999999999876542 1 12577776543 45666666643
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.39 E-value=0.15 Score=52.48 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.+|.|.|++|.||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 449
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.35 E-value=0.12 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4469999999999999999999753
No 450
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.33 E-value=1.1 Score=48.70 Aligned_cols=52 Identities=8% Similarity=-0.019 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARK 156 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 156 (824)
-.++.|.|.+|+||||+|.+++...... .=..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4689999999999999999999876431 11256776654 4566777777644
No 451
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.31 E-value=0.18 Score=50.85 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=23.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
++|+|.|-||+||||+|..+......
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 68888999999999999999988754
No 452
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.30 E-value=0.21 Score=55.09 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-|-++|++|+|||+||+.+++..
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGB
T ss_pred eeEeecCchHHHHHHHHHHHHHH
Confidence 57799999999999999998754
No 453
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.23 E-value=0.14 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
-.++.|+|.+|.||||||..+.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 37999999999999999999987543
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.22 E-value=0.15 Score=48.75 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 455
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.22 E-value=0.13 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.-.+++|+|+.|.|||||.+.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3469999999999999999999753
No 456
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.21 E-value=0.15 Score=52.30 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
+.-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344799999999999999999998765
No 457
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.21 E-value=1 Score=44.12 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=48.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhcccc-ceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-------------cc
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHF-NTFIWVEASYEDDLKELQIKIARKIDFVLSSD-------------ES 166 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------------~~ 166 (824)
+.+.|+|..|.||||+...+.-+.... .... ...+.+......-...+.+.+...++...... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQ-NDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPH 155 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHH-TTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhh-cCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCC
Confidence 578999999999998766554332221 1112 23444444444344455555554443221100 00
Q ss_pred ---hhhhHHHHHHHHHHHHcCCeEEEEEeCCCcc
Q 048180 167 ---VRDNAILLENALQTLLETGKILLILDNMRKA 197 (824)
Q Consensus 167 ---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 197 (824)
.-.....+.+.+...+++- -+||+|.++..
T Consensus 156 ~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 156 ASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp SEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred CeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 0012234444444333333 47899999874
No 458
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.19 E-value=0.13 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.+++|+|..|.|||||.+.++.-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34469999999999999999999753
No 459
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.19 E-value=0.18 Score=45.90 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
+-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 460
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.18 E-value=0.27 Score=46.42 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 461
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.16 E-value=0.39 Score=48.92 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.++|+|.|-||+||||+|..+......
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 378999999999999999999988754
No 462
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.15 E-value=0.45 Score=46.03 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.|.+.|.||+||||+|..+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4778899999999999999988754
No 463
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.10 E-value=0.13 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|+.|.|||||.+.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999998754
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.06 E-value=0.19 Score=49.75 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
...|.|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998864
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.00 E-value=0.13 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.-.+++|+|..|.|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4469999999999999999998753
No 466
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.94 E-value=0.19 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
++|.|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998864
No 467
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.92 E-value=0.14 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998764
No 468
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.91 E-value=0.13 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997643
No 469
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.88 E-value=0.18 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.9
Q ss_pred eEEEEEcCCCChHhHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.64 E-value=0.19 Score=53.24 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..-.+++|+|+.|.|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999999753
No 471
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.64 E-value=0.093 Score=47.23 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-|-|+|..|+|||++|+.+++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3669999999999999998764
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.51 E-value=0.19 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHhHHHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNRIL 125 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~~~ 125 (824)
.++|+|..|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998653
No 473
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.42 E-value=0.17 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHhHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~ 122 (824)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.39 E-value=0.19 Score=45.80 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHhHHHHHHHHH
Q 048180 102 VLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 102 vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 475
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.37 E-value=0.49 Score=50.30 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=31.7
Q ss_pred ccCCceEEEEEc-CCCChHhHHHHHHHHHHHhhhccccceEEEEEeC
Q 048180 96 YNQGAVVLGVCG-ASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEAS 141 (824)
Q Consensus 96 ~~~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s 141 (824)
...+.++|+|+| -||+||||+|..++.....+ =..++-|...
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~----g~rVlliD~D 181 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM----GKKVFYLNIE 181 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH----TCCEEEEECC
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhC----CCCEEEEECC
Confidence 345689999996 99999999999998877542 1246666655
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.23 E-value=0.44 Score=45.56 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.2
Q ss_pred eEEEEE-cCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCC
Q 048180 101 VVLGVC-GASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDD 145 (824)
Q Consensus 101 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 145 (824)
++|+|+ +-||+||||+|..+......+ + ..++-|......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g--~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--G--YNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--T--CCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--C--CeEEEEECCCCCC
Confidence 688898 689999999999999887642 1 2355566544433
No 477
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.21 E-value=0.75 Score=58.68 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-cchhhhHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD-ESVRDNAILLENA 177 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~ 177 (824)
.-+++-|+|.+|+||||||.++....... =..++|++....++... ++.++.+...- -.......++.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~----G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~ 452 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHH
Confidence 34799999999999999999999876432 23678888887777542 44555432210 0001122334444
Q ss_pred HHHHH-cCCeEEEEEeCCCc
Q 048180 178 LQTLL-ETGKILLILDNMRK 196 (824)
Q Consensus 178 l~~~l-~~kr~LlVlDdv~~ 196 (824)
++... +.+--+||+|-+..
T Consensus 453 ~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 453 CDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGG
T ss_pred HHHHHHhcCCcEEEECCHHH
Confidence 44333 24556999998753
No 478
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.11 E-value=0.23 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..+||.|++|.||||+|+.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 479
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.08 E-value=0.16 Score=49.94 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
..-.+|+|.|..|.||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44579999999999999999998664
No 480
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.04 E-value=0.17 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
..-.+++|+|+.|.|||||++.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4457999999999999999999865
No 481
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.98 E-value=0.21 Score=47.08 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 482
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.97 E-value=0.18 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-.+++|+|..|.|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998654
No 483
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.96 E-value=0.78 Score=57.73 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcCCHHHHHHHHHHhcccccCCC-cchhhhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYEDDLKELQIKIARKIDFVLSSD-ESVRDNAILLENALQ 179 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 179 (824)
+++-|+|.+|+||||||.++....... =..++|++....++... ++.++.+...- ........++.+.++
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~----G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Q ss_pred HHH-cCCeEEEEEeCC
Q 048180 180 TLL-ETGKILLILDNM 194 (824)
Q Consensus 180 ~~l-~~kr~LlVlDdv 194 (824)
... +.+--+||+|-+
T Consensus 455 ~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHhcCCCEEEECCH
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.95 E-value=0.27 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 485
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.81 E-value=1 Score=48.79 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=51.2
Q ss_pred eEEEEEcCCCChHhHHH-HHHHHHHHhhhccccc-eEEEEEeCCcCC-HHHHHHHHHHhcccc-------cCCCcc-hh-
Q 048180 101 VVLGVCGASGVGKTEAG-AHVYNRILNQYRSHFN-TFIWVEASYEDD-LKELQIKIARKIDFV-------LSSDES-VR- 168 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~-~~- 168 (824)
.-++|+|..|+|||+|| ..+.|. ++-+ .++++-+.+... +.++..++...=... ..++.. ..
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~------~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ------RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT------SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh------ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 35789999999999997 456553 1233 357787877644 455666654421110 011111 11
Q ss_pred ---hhHHHHHHHHHHHHcCCeEEEEEeCCCc
Q 048180 169 ---DNAILLENALQTLLETGKILLILDNMRK 196 (824)
Q Consensus 169 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 196 (824)
...-.+.+++++ +|+.+|||+||+-.
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 122334455553 48999999999843
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.80 E-value=0.16 Score=54.85 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
....+|.|+|++|.||||+|+.+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999998764
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.78 E-value=0.21 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.-|-|+|..|+|||++|+.+++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 356699999999999999998864
No 488
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.69 E-value=0.22 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.+++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998764
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.63 E-value=0.24 Score=46.58 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999763
No 490
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=88.62 E-value=0.31 Score=53.49 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=19.8
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
++++ |+|+|.+|+|||||...+...
T Consensus 232 ~~~k-V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVS-TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEE-EEEECCTTSSHHHHHHHCC--
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCC
Confidence 3444 899999999999999988765
No 491
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.51 E-value=0.23 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHhHHHHHHHHH
Q 048180 99 GAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 99 ~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4469999999999999999999764
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.50 E-value=0.2 Score=47.37 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHhHHHHHHHHH
Q 048180 100 AVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 100 ~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
-+.|.|.|..|+||||||..+..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999765
No 493
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.46 E-value=0.2 Score=51.12 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
..-.+++|+|..|.|||||.+.+..-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344799999999999999999997643
No 494
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.43 E-value=0.23 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYN 122 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~ 122 (824)
..-.+++|+|+.|.|||||.+.+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3447999999999999999999975
No 495
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=88.39 E-value=0.67 Score=50.74 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=51.7
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHhhhccccceEEEEEeCCcC-CHHHHHHHHHH----hcccccC---------CCcc
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILNQYRSHFNTFIWVEASYED-DLKELQIKIAR----KIDFVLS---------SDES 166 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~----~l~~~~~---------~~~~ 166 (824)
.-++|+|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++-+ ..+.... .++.
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~~------~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p 295 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKWS------NADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMP 295 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHS------SCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSC
T ss_pred CEEeeeCCCCccHHHHHHHHHhcc------CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCC
Confidence 468999999999999999987752 24567778777653 34444444322 1110000 0111
Q ss_pred hh------hhHHHHHHHHHHHHcCCeEEEEEeCCC
Q 048180 167 VR------DNAILLENALQTLLETGKILLILDNMR 195 (824)
Q Consensus 167 ~~------~~~~~l~~~l~~~l~~kr~LlVlDdv~ 195 (824)
.. ...-.+.+++++ +++.+||++|++-
T Consensus 296 ~~~R~~~~~~altiAEyfrd--~G~dVLl~~Ds~t 328 (578)
T 3gqb_A 296 VAAREASIYVGVTIAEYFRD--QGFSVALMADSTS 328 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCEEEECCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCEEEEecChH
Confidence 11 122334455554 4899999999984
No 496
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.32 E-value=0.33 Score=45.76 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHHHh
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRILN 126 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 126 (824)
.++.|+|+.|.||||++..+..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999777766543
No 497
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.31 E-value=0.25 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHhHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
No 498
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.28 E-value=0.25 Score=46.27 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHhHHHHHHHHHH
Q 048180 101 VVLGVCGASGVGKTEAGAHVYNRI 124 (824)
Q Consensus 101 ~vi~I~G~gGiGKTtLa~~v~~~~ 124 (824)
.+.+|+|..|.|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999997643
No 499
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.26 E-value=0.27 Score=44.84 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=19.1
Q ss_pred EEEEcCCCChHhHHHHHHHHH
Q 048180 103 LGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 103 i~I~G~gGiGKTtLa~~v~~~ 123 (824)
|+|+|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998765
No 500
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.23 E-value=0.29 Score=47.34 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHhHHHHHHHHH
Q 048180 98 QGAVVLGVCGASGVGKTEAGAHVYNR 123 (824)
Q Consensus 98 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 123 (824)
.....|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45567899999999999999998765
Done!