BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048181
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 167/297 (56%), Gaps = 5/297 (1%)
Query: 17 MVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPT 75
+ S P +IL ++ S F+ FYT V DGR++KY+ P+ GF DFA+ +P
Sbjct: 2 LALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY 61
Query: 76 RSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAE 135
+KA C+ +T+ + P+C RT+ ++ + QLYI D Y L VVG G ATQLAT +
Sbjct: 62 WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 136 GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195
G F +L + VDQ TG+VYFTD S +YD R + ++ T+D TGRL+ Y+P + + T+LL
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181
Query: 196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLL 255
+ L P G +S DSSF+LV+EF ++ +KYWL GP+ + +++ P NIKRN
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD-- 239
Query: 256 QTFW--EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
FW + + G P G + FG +L+ I ++ ++Q G L
Sbjct: 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 296
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 164/288 (56%), Gaps = 5/288 (1%)
Query: 26 KILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGT 84
+IL ++ S F+ FYT V DGR++KY+ P+ GF DFA+ +P +KA C+ +
Sbjct: 2 EILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENS 61
Query: 85 TNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDG 144
T+ + P+C RT+ ++ + QLYI D Y L VVG G ATQLAT +G F +L
Sbjct: 62 TDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYA 121
Query: 145 LDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGV 204
+ VDQ TG+VYFTD S +YD R + ++ T+D TGRL+ Y+P + + T+LL+ L P G
Sbjct: 122 VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGA 181
Query: 205 AISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFW--EAA 262
+S DSSF+LV+EF ++ +KYWL GP+ + +++ P NIKRN FW +
Sbjct: 182 EVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD--GHFWVSSSE 239
Query: 263 IITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
+ G P G + FG +L+ I ++ ++Q G L
Sbjct: 240 ELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 287
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 163/297 (54%), Gaps = 5/297 (1%)
Query: 17 MVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPT 75
+ S P +IL ++ S F+ FYT V DGR+ KY+ P+ GF DFA+ +P
Sbjct: 2 LALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPY 61
Query: 76 RSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAE 135
+KA C+ +T+ + P+C RT+ ++ + Q YI D Y L VVG G ATQLAT +
Sbjct: 62 WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 136 GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195
G F +L + VDQ TG+VYFTD S +YD R + ++ T+D TGRL Y+P + + T+L
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLX 181
Query: 196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLL 255
+ L P G +S DSSF+LV+EF ++ +KYWL GP+ + +++ P NIKRN
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD-- 239
Query: 256 QTFW--EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
FW + + G P G + FG +L+ I ++ ++Q G L
Sbjct: 240 GHFWVSSSEELDGNXHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 296
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS 211
G YFTD G + + G + +P VT +++N++ G+A+S D
Sbjct: 146 GGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194
Query: 212 FLLVSEFTGNRTLKYWLR 229
L V+E T NR + L
Sbjct: 195 VLWVTETTANRLHRIALE 212
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS 211
G YFTD G + + G + +P VT +++N++ G+A+S D
Sbjct: 146 GGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194
Query: 212 FLLVSEFTGNRTLKYWLR 229
L V+E T NR + L
Sbjct: 195 VLWVTETTANRLHRIALE 212
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS 211
G YFTD G + + G + +P VT +++N++ G+A+S D
Sbjct: 146 GGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194
Query: 212 FLLVSEFTGNRTLKYWLR 229
L V+E T NR + L
Sbjct: 195 VLWVTETTANRLHRIALE 212
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 74 PTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL 118
P +A DG+ L P R GL + YA R+LY D + L+
Sbjct: 144 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI 188
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 74 PTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL 118
P +A DG+ L P R GL + YA R+LY D + L+
Sbjct: 146 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI 190
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 74 PTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL 118
P +A DG+ L P R GL + YA R+LY D + L+
Sbjct: 151 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,530,335
Number of Sequences: 62578
Number of extensions: 416428
Number of successful extensions: 855
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 19
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)